BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038763
(690 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255566048|ref|XP_002524012.1| DNA-binding protein smubp-2, putative [Ricinus communis]
gi|223536739|gb|EEF38380.1| DNA-binding protein smubp-2, putative [Ricinus communis]
Length = 989
Score = 1203 bits (3113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/710 (84%), Positives = 643/710 (90%), Gaps = 20/710 (2%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
M+L++ K IQSR+DEFT+ MSELL+IERD+ELEFTQEELNAVPTPDENSD SKPIEFLVS
Sbjct: 280 MNLDKAKAIQSRIDEFTKTMSELLQIERDSELEFTQEELNAVPTPDENSDPSKPIEFLVS 339
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG+A QELCDTICNL VSTSTGLGGMHLVLFRVEGNHRLPPT LSPGDMVCVR+CDSRG
Sbjct: 340 HGQAQQELCDTICNLNAVSTSTGLGGMHLVLFRVEGNHRLPPTNLSPGDMVCVRICDSRG 399
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A ATSC+QGFV+NLGEDGC+ISVALESRHGDPTFSKLFGK VRIDRI GLAD LTYERNC
Sbjct: 400 AGATSCMQGFVNNLGEDGCSISVALESRHGDPTFSKLFGKGVRIDRIHGLADALTYERNC 459
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMG-KTFDDSQ 239
EALMLLQKNGL K+NPSIA V TLFGD ED+ WLEE DLA+W+E +DG G + FDDSQ
Sbjct: 460 EALMLLQKNGLQKKNPSIAIVATLFGDSEDLAWLEEKDLAEWNEADMDGCFGSERFDDSQ 519
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++A+ALGLN+KRPLLIIQGPPGTGK+GLLKE+I RAV QGERVLVTAPTNAAVDNMVEKL
Sbjct: 520 RRAMALGLNQKRPLLIIQGPPGTGKSGLLKELIVRAVHQGERVLVTAPTNAAVDNMVEKL 579
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
S++GL+IVRVGNPARIS AVASKSL EIV SKLA+F EFERKKSDLRKDLR CL+DDSL
Sbjct: 580 SNIGLDIVRVGNPARISSAVASKSLSEIVNSKLATFRMEFERKKSDLRKDLRHCLEDDSL 639
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------ 413
AAGIRQLLKQLGKT+KKKEKE+VKEVLSSAQVVLATNTGAADPLIRRLDTFDLV
Sbjct: 640 AAGIRQLLKQLGKTMKKKEKESVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAG 699
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
GKRCILAGDQCQLAPVILSRKALEGG+GVSLLERAATLH+GVLA +L
Sbjct: 700 QAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGVSLLERAATLHDGVLALQL 759
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
TTQYRMNDAIASWASKEMYGG L SSS VASHLLV +PFVKPTWITQCPLLLLDTR+PYG
Sbjct: 760 TTQYRMNDAIASWASKEMYGGLLKSSSKVASHLLVHSPFVKPTWITQCPLLLLDTRMPYG 819
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
SL +GCEEHLD AGTGSFYNEGEAEIVV HV SLI AGV P+ IAVQSPYVAQVQ LR+R
Sbjct: 820 SLFIGCEEHLDPAGTGSFYNEGEAEIVVQHVISLIYAGVRPTTIAVQSPYVAQVQLLRDR 879
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
LD+LPEA GVEVATIDSFQGREADAVIISMVRSN LGAVGFLGDSRRMNVAITRA +HVA
Sbjct: 880 LDELPEADGVEVATIDSFQGREADAVIISMVRSNNLGAVGFLGDSRRMNVAITRARRHVA 939
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS 690
VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS
Sbjct: 940 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS 989
>gi|224124044|ref|XP_002319231.1| predicted protein [Populus trichocarpa]
gi|222857607|gb|EEE95154.1| predicted protein [Populus trichocarpa]
Length = 788
Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/709 (85%), Positives = 640/709 (90%), Gaps = 19/709 (2%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
M+LE+ K IQ R++EFT +MSELLRIERDAELEFTQEELNAVPT DE+SDSSKPIEFLVS
Sbjct: 80 MNLEKAKAIQGRINEFTNQMSELLRIERDAELEFTQEELNAVPTLDESSDSSKPIEFLVS 139
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG+ QELCDTICNL+ VSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVR+CDSRG
Sbjct: 140 HGQGQQELCDTICNLYAVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRICDSRG 199
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A ATS +QGFV+NLGEDGC+ISVALESRHGDPTFSKL GKSVRIDRI GLAD +TYERNC
Sbjct: 200 AGATSSLQGFVNNLGEDGCSISVALESRHGDPTFSKLSGKSVRIDRIHGLADAVTYERNC 259
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQK 240
EALMLLQK GLHK+NPSIA V TLFGDKEDV WLEENDLA W E D +GK FDDSQ+
Sbjct: 260 EALMLLQKKGLHKKNPSIAVVATLFGDKEDVAWLEENDLASWDEADFDEHLGKPFDDSQR 319
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300
+AI LGLNKKRP LIIQGPPGTGK+GLLKE+IA AV +GERVLVTAPTNAAVDNMVEKLS
Sbjct: 320 RAITLGLNKKRPFLIIQGPPGTGKSGLLKELIALAVGKGERVLVTAPTNAAVDNMVEKLS 379
Query: 301 DVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLA 360
++GLNIVRVGNPARIS AVASKSLG+IV SKLA+F EFERKKSDLRKDL CLKDDSLA
Sbjct: 380 NIGLNIVRVGNPARISSAVASKSLGDIVNSKLAAFRTEFERKKSDLRKDLSHCLKDDSLA 439
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------- 413
AGIRQLLKQLGKTLKKKEKETV+EVLSSAQVVLATNTGAADPLIRRLD FDLV
Sbjct: 440 AGIRQLLKQLGKTLKKKEKETVREVLSSAQVVLATNTGAADPLIRRLDAFDLVVMDEAGQ 499
Query: 414 ------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLT 461
GKRCILAGDQCQLAPVILSRKALEGG+GVSLLERA+TLHEGVLATKLT
Sbjct: 500 AIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGVSLLERASTLHEGVLATKLT 559
Query: 462 TQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGS 521
TQYRMNDAIASWASKEMY G L SSSTVASHLLVDTPFVKPTWITQCPLLLLDTR+PYGS
Sbjct: 560 TQYRMNDAIASWASKEMYSGLLKSSSTVASHLLVDTPFVKPTWITQCPLLLLDTRMPYGS 619
Query: 522 LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL 581
LS+GCEEHLD AGTGSFYNEGEA+IVV HV SLI +GV P+AIAVQSPYVAQVQ LRERL
Sbjct: 620 LSVGCEEHLDPAGTGSFYNEGEADIVVQHVSSLIFSGVRPTAIAVQSPYVAQVQLLRERL 679
Query: 582 DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAV 641
D+LPEA GVE+ATIDSFQGREADAVIISMVRSNTLGAVGFLGDS+R NVAITRA KHVAV
Sbjct: 680 DELPEADGVEIATIDSFQGREADAVIISMVRSNTLGAVGFLGDSKRTNVAITRARKHVAV 739
Query: 642 VCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS 690
VCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSG M+PMLPSIS
Sbjct: 740 VCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGFDMNPMLPSIS 788
>gi|297737213|emb|CBI26414.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 1194 bits (3088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/710 (85%), Positives = 647/710 (91%), Gaps = 20/710 (2%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
M+L++ K IQSR+DEFT+RMSELL+IERD+ELEFTQEELNAVPTPDE+SDSSKPIEFLVS
Sbjct: 80 MELDKAKAIQSRIDEFTKRMSELLQIERDSELEFTQEELNAVPTPDESSDSSKPIEFLVS 139
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG+A QELCDTICNL VST GLGGMHLVLF+VEGNHRLPPTTLSPGDMVCVR+CDSRG
Sbjct: 140 HGQAQQELCDTICNLNAVSTFIGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRICDSRG 199
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A ATSC+QGFV +LG+DGC+ISVALESRHGDPTFSKLFGKSVRIDRI GLAD LTYERNC
Sbjct: 200 AGATSCMQGFVDSLGKDGCSISVALESRHGDPTFSKLFGKSVRIDRIHGLADALTYERNC 259
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIM-GKTFDDSQ 239
EALMLLQKNGL K+NPSIA V TLFGDKEDV WLEENDL DW+EV LD ++ +DDSQ
Sbjct: 260 EALMLLQKNGLQKKNPSIAVVATLFGDKEDVAWLEENDLVDWAEVGLDELLESGAYDDSQ 319
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++AIALGLNKKRP+LIIQGPPGTGKT LLKE+IA AVQQGERVLVTAPTNAAVDNMVEKL
Sbjct: 320 RRAIALGLNKKRPILIIQGPPGTGKTVLLKELIALAVQQGERVLVTAPTNAAVDNMVEKL 379
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
S++G+NIVRVGNPARIS AVASKSLGEIV SKL +F+ EFERKKSDLRKDLR CLKDDSL
Sbjct: 380 SNIGVNIVRVGNPARISSAVASKSLGEIVNSKLENFLTEFERKKSDLRKDLRHCLKDDSL 439
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------ 413
AAGIRQLLKQLGK LKKKEKETVKEVLSSAQVVLATNTGAADP+IRRLD FDLV
Sbjct: 440 AAGIRQLLKQLGKALKKKEKETVKEVLSSAQVVLATNTGAADPVIRRLDAFDLVIIDEAG 499
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
GKRCI+AGDQCQLAPVILSRKALEGG+GVSLLERAATLHE VLATKL
Sbjct: 500 QAIEPSCWIPILQGKRCIIAGDQCQLAPVILSRKALEGGLGVSLLERAATLHEEVLATKL 559
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
TTQYRMNDAIASWASKEMYGGSL SSS+V SHLLVD+PFVKP WITQCPLLLLDTR+PYG
Sbjct: 560 TTQYRMNDAIASWASKEMYGGSLKSSSSVFSHLLVDSPFVKPAWITQCPLLLLDTRMPYG 619
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
SLS+GCEEHLD AGTGSFYNEGEA+IVV HV SLI AGVSP+AIAVQSPYVAQVQ LR+R
Sbjct: 620 SLSVGCEEHLDPAGTGSFYNEGEADIVVQHVLSLISAGVSPTAIAVQSPYVAQVQLLRDR 679
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
LD++PEA GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA KHVA
Sbjct: 680 LDEIPEAVGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRARKHVA 739
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS 690
VVCDSSTICHNTFLARLLRHIRY GRVKHAEPG+FGGSGLGM+PMLP IS
Sbjct: 740 VVCDSSTICHNTFLARLLRHIRYIGRVKHAEPGTFGGSGLGMNPMLPFIS 789
>gi|225454589|ref|XP_002264216.1| PREDICTED: DNA-binding protein SMUBP-2 [Vitis vinifera]
Length = 953
Score = 1192 bits (3083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/710 (85%), Positives = 647/710 (91%), Gaps = 20/710 (2%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
M+L++ K IQSR+DEFT+RMSELL+IERD+ELEFTQEELNAVPTPDE+SDSSKPIEFLVS
Sbjct: 244 MELDKAKAIQSRIDEFTKRMSELLQIERDSELEFTQEELNAVPTPDESSDSSKPIEFLVS 303
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG+A QELCDTICNL VST GLGGMHLVLF+VEGNHRLPPTTLSPGDMVCVR+CDSRG
Sbjct: 304 HGQAQQELCDTICNLNAVSTFIGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRICDSRG 363
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A ATSC+QGFV +LG+DGC+ISVALESRHGDPTFSKLFGKSVRIDRI GLAD LTYERNC
Sbjct: 364 AGATSCMQGFVDSLGKDGCSISVALESRHGDPTFSKLFGKSVRIDRIHGLADALTYERNC 423
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIM-GKTFDDSQ 239
EALMLLQKNGL K+NPSIA V TLFGDKEDV WLEENDL DW+EV LD ++ +DDSQ
Sbjct: 424 EALMLLQKNGLQKKNPSIAVVATLFGDKEDVAWLEENDLVDWAEVGLDELLESGAYDDSQ 483
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++AIALGLNKKRP+LIIQGPPGTGKT LLKE+IA AVQQGERVLVTAPTNAAVDNMVEKL
Sbjct: 484 RRAIALGLNKKRPILIIQGPPGTGKTVLLKELIALAVQQGERVLVTAPTNAAVDNMVEKL 543
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
S++G+NIVRVGNPARIS AVASKSLGEIV SKL +F+ EFERKKSDLRKDLR CLKDDSL
Sbjct: 544 SNIGVNIVRVGNPARISSAVASKSLGEIVNSKLENFLTEFERKKSDLRKDLRHCLKDDSL 603
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------ 413
AAGIRQLLKQLGK LKKKEKETVKEVLSSAQVVLATNTGAADP+IRRLD FDLV
Sbjct: 604 AAGIRQLLKQLGKALKKKEKETVKEVLSSAQVVLATNTGAADPVIRRLDAFDLVIIDEAG 663
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
GKRCI+AGDQCQLAPVILSRKALEGG+GVSLLERAATLHE VLATKL
Sbjct: 664 QAIEPSCWIPILQGKRCIIAGDQCQLAPVILSRKALEGGLGVSLLERAATLHEEVLATKL 723
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
TTQYRMNDAIASWASKEMYGGSL SSS+V SHLLVD+PFVKP WITQCPLLLLDTR+PYG
Sbjct: 724 TTQYRMNDAIASWASKEMYGGSLKSSSSVFSHLLVDSPFVKPAWITQCPLLLLDTRMPYG 783
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
SLS+GCEEHLD AGTGSFYNEGEA+IVV HV SLI AGVSP+AIAVQSPYVAQVQ LR+R
Sbjct: 784 SLSVGCEEHLDPAGTGSFYNEGEADIVVQHVLSLISAGVSPTAIAVQSPYVAQVQLLRDR 843
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
LD++PEA GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA KHVA
Sbjct: 844 LDEIPEAVGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRARKHVA 903
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS 690
VVCDSSTICHNTFLARLLRHIRY GRVKHAEPG+FGGSGLGM+PMLP IS
Sbjct: 904 VVCDSSTICHNTFLARLLRHIRYIGRVKHAEPGTFGGSGLGMNPMLPFIS 953
>gi|356501783|ref|XP_003519703.1| PREDICTED: DNA-binding protein SMUBP-2-like [Glycine max]
Length = 928
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/710 (81%), Positives = 634/710 (89%), Gaps = 20/710 (2%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
MD E+VKTIQ R+DEFT MSELLRIERDAELEFTQEEL+AVP PD+ SDSSKPI+FLVS
Sbjct: 219 MDFEKVKTIQHRIDEFTSHMSELLRIERDAELEFTQEELDAVPKPDDTSDSSKPIDFLVS 278
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
H + QELCDTICNL +STS GLGGMHLVLF+VEGNHRLPPT LSPGDMVCVR DS G
Sbjct: 279 HSQPQQELCDTICNLNAISTSRGLGGMHLVLFKVEGNHRLPPTALSPGDMVCVRTYDSTG 338
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A TSCIQGFV++ G+DG +I+VALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC
Sbjct: 339 AITTSCIQGFVNSFGDDGYSITVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 398
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMG-KTFDDSQ 239
EALMLLQKNGL K+NPSI+ V TLFGD EDV WLE+N L DW+E LD +G +TFDDSQ
Sbjct: 399 EALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNQLVDWAEENLDARLGNETFDDSQ 458
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++AIA+GLNKKRP+L+IQGPPGTGKTGLLK++I AVQQGERVLVTAPTNAAVDNMVEKL
Sbjct: 459 QRAIAMGLNKKRPVLVIQGPPGTGKTGLLKQLIVCAVQQGERVLVTAPTNAAVDNMVEKL 518
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
S+VGLNIVRVGNPARIS V SKSL EIV +KLASF E+ERKKSDLRKDLR CLKDDSL
Sbjct: 519 SNVGLNIVRVGNPARISKTVGSKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLKDDSL 578
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------ 413
A+GIRQLLKQLG++LKKKEK+TV EVLSSAQVVLATNTGAADPLIRRLDTFDLV
Sbjct: 579 ASGIRQLLKQLGRSLKKKEKQTVVEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAG 638
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
GKRCILAGDQCQLAPVILSRKALEGG+G+SLLERAATLHEG+L T+L
Sbjct: 639 QAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERAATLHEGILTTRL 698
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
TTQYRMNDAIASWASKEMYGG L SS TV SHLLV++PFVKPTWITQCPLLLLDTR+PYG
Sbjct: 699 TTQYRMNDAIASWASKEMYGGLLKSSETVFSHLLVNSPFVKPTWITQCPLLLLDTRMPYG 758
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
SLS+GCEEHLD AGTGS YNEGEAEIV+ HVFSLI AGVSP+AIAVQSPYVAQVQ LR++
Sbjct: 759 SLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYAGVSPTAIAVQSPYVAQVQLLRDK 818
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
LD+ PEAAG EVATIDSFQGREADAVI+SMVRSNTLGAVGFLGDSRR+NVAITRA KH+A
Sbjct: 819 LDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLA 878
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS 690
+VCDSSTICHNTFLARLLRHIR+FGRVKHAEPGSFGG GLGM+P+LPSI+
Sbjct: 879 LVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN 928
>gi|356536591|ref|XP_003536820.1| PREDICTED: DNA-binding protein SMUBP-2-like [Glycine max]
Length = 949
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/710 (81%), Positives = 636/710 (89%), Gaps = 20/710 (2%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
MD E+VK +Q R+DEFT MSELLRIERDAELEFTQEEL+AVP PD+ SDSSK I+FLVS
Sbjct: 240 MDFEKVKALQHRIDEFTTHMSELLRIERDAELEFTQEELDAVPKPDDTSDSSKTIDFLVS 299
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
H + QELCDTICNL +STSTGLGGMHLVLF+VEGNHRLPPTTLSPGDMVCVR DS G
Sbjct: 300 HSQPQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTYDSMG 359
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A TSCIQGFV++ G+DG +I+VALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC
Sbjct: 360 AITTSCIQGFVNSFGDDGYSITVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 419
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMG-KTFDDSQ 239
EALMLLQKNGL K+NPSI+ V TLFGD EDV WLE+N LADW+E KLDG +G +TFDDSQ
Sbjct: 420 EALMLLQKNGLRKKNPSISVVATLFGDGEDVAWLEKNHLADWAEEKLDGRLGNETFDDSQ 479
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
+AIA+GLNKKRP+L+IQGPPGTGKTGLLK++IA AVQQGERVLVTAPTNAAVDNMVEKL
Sbjct: 480 WRAIAMGLNKKRPVLVIQGPPGTGKTGLLKQLIACAVQQGERVLVTAPTNAAVDNMVEKL 539
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
S+VGLNIVRVGNPARIS V SKSL EIV +KLASF E+ERKKSDLRKDLR CL+DDSL
Sbjct: 540 SNVGLNIVRVGNPARISKTVGSKSLEEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSL 599
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------ 413
A+GIRQLLKQLG++LKKKEK+TV EVLSSAQVV+ATNTGAADPL+RRLDTFDLV
Sbjct: 600 ASGIRQLLKQLGRSLKKKEKQTVIEVLSSAQVVVATNTGAADPLVRRLDTFDLVVIDEAG 659
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
GKRCILAGDQCQLAPVILSRKALE G+G+SLLERAATLHEG+L T+L
Sbjct: 660 QAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEVGLGISLLERAATLHEGILTTRL 719
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
TTQYRMNDAIASWASKEMYGG L SS TV SHLLVD+PFVKPTWITQCPLLLLDTR+PYG
Sbjct: 720 TTQYRMNDAIASWASKEMYGGLLKSSETVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYG 779
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
SLS+GCEEHLD AGTGS YNEGEAEIV+ HVFSLI AGVSP+AIAVQSPYVAQVQ LR++
Sbjct: 780 SLSVGCEEHLDPAGTGSLYNEGEAEIVLQHVFSLIYAGVSPTAIAVQSPYVAQVQLLRDK 839
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
LD+ PEAAG EVATIDSFQGREADAVI+SMVRSNTLGAVGFLGDSRR+NVAITRA KH+A
Sbjct: 840 LDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLA 899
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS 690
+VCDSSTICHNTFLARLLRHIR+FGRVKHAEPGSFGG GLGM+P+LPSI+
Sbjct: 900 LVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN 949
>gi|449451781|ref|XP_004143639.1| PREDICTED: DNA-binding protein SMUBP-2-like [Cucumis sativus]
gi|449527761|ref|XP_004170878.1| PREDICTED: DNA-binding protein SMUBP-2-like [Cucumis sativus]
Length = 957
Score = 1177 bits (3045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/710 (82%), Positives = 640/710 (90%), Gaps = 20/710 (2%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
MDL++ K IQ+R+DEF RMSELLRIERD+ELEFTQEELNAVPTPDE+SD+SKPIEFLVS
Sbjct: 248 MDLKKAKAIQNRIDEFANRMSELLRIERDSELEFTQEELNAVPTPDESSDNSKPIEFLVS 307
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG+A QELCDTICNL VSTSTGLGGMHLVLFRVEG+HRLPPTTLSPGDMVCVRVCDSRG
Sbjct: 308 HGQAQQELCDTICNLNAVSTSTGLGGMHLVLFRVEGSHRLPPTTLSPGDMVCVRVCDSRG 367
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A ATSC+QGFV+NLG+DGC+I+VALESRHGDPTFSKLFGK+VRIDRI GLADTLTYERNC
Sbjct: 368 AGATSCMQGFVNNLGDDGCSITVALESRHGDPTFSKLFGKTVRIDRIPGLADTLTYERNC 427
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIM-GKTFDDSQ 239
EALMLLQKNGLHK+NPSIA V TLFGDKED+ W+E+N+L ++ LDGI+ FDDSQ
Sbjct: 428 EALMLLQKNGLHKKNPSIAVVATLFGDKEDIKWMEDNNLIGLADTNLDGIVFNGDFDDSQ 487
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
K AI+ LNKKRP+LIIQGPPGTGKTGLLKE+IA AVQQGERVLVTAPTNAAVDNMVEKL
Sbjct: 488 KSAISRALNKKRPILIIQGPPGTGKTGLLKELIALAVQQGERVLVTAPTNAAVDNMVEKL 547
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
S++G+NIVRVGNPARIS +VASKSL EIV S+L+SF + ERKK+DLRKDLRQCLKDDSL
Sbjct: 548 SNIGINIVRVGNPARISSSVASKSLAEIVNSELSSFRTDIERKKADLRKDLRQCLKDDSL 607
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------ 413
AAGIRQLLKQLGK+LKKKEKETVKEVLS+AQVVLATNTGAADPLIR+L+ FDLV
Sbjct: 608 AAGIRQLLKQLGKSLKKKEKETVKEVLSNAQVVLATNTGAADPLIRKLEKFDLVVIDEAG 667
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
G+RCILAGDQCQLAPVILSRKALEGG+GVSLLERAATLHEG L T L
Sbjct: 668 QAIEPACWIPILQGRRCILAGDQCQLAPVILSRKALEGGLGVSLLERAATLHEGALTTML 727
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRMNDAIASWASKEMY G L SS TV+SHLLV++PFVKPTWITQCPLLLLDTR+PYG
Sbjct: 728 TIQYRMNDAIASWASKEMYDGILESSPTVSSHLLVNSPFVKPTWITQCPLLLLDTRMPYG 787
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
SLS+GCEEHLD AGTGS YNEGEA+IVV HV SLI +GVSP AIAVQSPYVAQVQ LR R
Sbjct: 788 SLSVGCEEHLDPAGTGSLYNEGEADIVVQHVCSLIYSGVSPRAIAVQSPYVAQVQLLRNR 847
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
LD++PE+AG+EVATIDSFQGREADAVIISMVRSN LGAVGFLGDSRRMNVAITRA KHVA
Sbjct: 848 LDEIPESAGIEVATIDSFQGREADAVIISMVRSNNLGAVGFLGDSRRMNVAITRARKHVA 907
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS 690
+VCDSSTIC NTFLARLLRHIRYFGRVKHAEPGSFGGSGLGM+PMLPSI+
Sbjct: 908 LVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMNPMLPSIN 957
>gi|297805152|ref|XP_002870460.1| hypothetical protein ARALYDRAFT_493645 [Arabidopsis lyrata subsp.
lyrata]
gi|297316296|gb|EFH46719.1| hypothetical protein ARALYDRAFT_493645 [Arabidopsis lyrata subsp.
lyrata]
Length = 979
Score = 1135 bits (2936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/709 (81%), Positives = 629/709 (88%), Gaps = 20/709 (2%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
M E+VK IQ+R+DEFT MS+LL++ERD ELE TQEEL+ +PTPDE+SDSSKPIEFLV
Sbjct: 270 MSSEKVKAIQARIDEFTSHMSQLLQVERDTELEVTQEELDVIPTPDESSDSSKPIEFLVR 329
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG APQELCDTICNL+ VSTSTGLGGMHLVLF+V GNHRLPPTTLSPGDMVC+RVCDSRG
Sbjct: 330 HGDAPQELCDTICNLYAVSTSTGLGGMHLVLFKVGGNHRLPPTTLSPGDMVCIRVCDSRG 389
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A AT+C QGFVHNLGEDGC+I VALESRHGDPTFSKLFGKSVRIDRI GLAD LTYERNC
Sbjct: 390 AGATACTQGFVHNLGEDGCSIGVALESRHGDPTFSKLFGKSVRIDRIHGLADALTYERNC 449
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL-DGIMGKTFDDSQ 239
EALMLLQKNGL K+NPSI+ V TLFGD+ED+TWLE+ND DWSE +L D + K FD SQ
Sbjct: 450 EALMLLQKNGLQKKNPSISVVATLFGDEEDITWLEQNDYVDWSEAELSDEPVSKLFDSSQ 509
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++AIALG+NKKRP++I+QGPPGTGKTG+LKE+I AVQQGERVLVTAPTNAAVDNMVEKL
Sbjct: 510 RRAIALGVNKKRPVMIVQGPPGTGKTGMLKEVITLAVQQGERVLVTAPTNAAVDNMVEKL 569
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
+GLNIVRVGNPARIS AVASKSLGEIV SKLASF AE ERKKSDLRKDLRQCL+DD L
Sbjct: 570 LHLGLNIVRVGNPARISSAVASKSLGEIVNSKLASFRAELERKKSDLRKDLRQCLRDDVL 629
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------ 413
AAGIRQLLKQLGKTLKKKEKETVKE+LS+A VV ATN GAADPLIRRL+TFDLV
Sbjct: 630 AAGIRQLLKQLGKTLKKKEKETVKEILSNAHVVFATNIGAADPLIRRLETFDLVVIDEAG 689
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
GKRCIL+GD CQLAPV+LSRKALEGG+GVSLLERAA+LH+GVLATKL
Sbjct: 690 QSIEPSCWIPILQGKRCILSGDPCQLAPVVLSRKALEGGLGVSLLERAASLHDGVLATKL 749
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
TTQYRMND IA WASKEMYGG L S+ +VASHLL+D+PFVKPTWITQCPL+LLDTR+PYG
Sbjct: 750 TTQYRMNDVIAGWASKEMYGGWLKSAPSVASHLLIDSPFVKPTWITQCPLVLLDTRMPYG 809
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
SLS+GCEE LD AGTGS YNEGEA+IVV+HV SLI AGVSP AIAVQSPYVAQVQ LRER
Sbjct: 810 SLSMGCEERLDPAGTGSLYNEGEADIVVNHVISLIYAGVSPMAIAVQSPYVAQVQLLRER 869
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
LDD P A GVEVATIDSFQGREADAVIISMVRSN LGAVGFLGDSRRMNVAITRA KHVA
Sbjct: 870 LDDFPVADGVEVATIDSFQGREADAVIISMVRSNNLGAVGFLGDSRRMNVAITRARKHVA 929
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSI 689
VVCDSSTICHNTFLARLLRHIRYFGRVKHA+PGS GGSGLG+DPMLP +
Sbjct: 930 VVCDSSTICHNTFLARLLRHIRYFGRVKHADPGSLGGSGLGLDPMLPYL 978
>gi|30692868|ref|NP_198446.3| putative DNA-binding protein [Arabidopsis thaliana]
gi|332006651|gb|AED94034.1| putative DNA-binding protein [Arabidopsis thaliana]
Length = 961
Score = 1134 bits (2934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/709 (81%), Positives = 629/709 (88%), Gaps = 20/709 (2%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
MD E+VK IQ R+DEFT +MS+LL++ERD ELE TQEEL+ VPTPDE+SDSSKPIEFLV
Sbjct: 252 MDSEKVKAIQERIDEFTSQMSQLLQVERDTELEVTQEELDVVPTPDESSDSSKPIEFLVR 311
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG APQELCDTICNL+ VSTSTGLGGMHLVLF+V GNHRLPPTTLSPGDMVC+RVCDSRG
Sbjct: 312 HGDAPQELCDTICNLYAVSTSTGLGGMHLVLFKVGGNHRLPPTTLSPGDMVCIRVCDSRG 371
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A AT+C QGFVHNLGEDGC+I VALESRHGDPTFSKLFGKSVRIDRI GLAD LTYERNC
Sbjct: 372 AGATACTQGFVHNLGEDGCSIGVALESRHGDPTFSKLFGKSVRIDRIHGLADALTYERNC 431
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL-DGIMGKTFDDSQ 239
EALMLLQKNGL K+NPSI+ V TLFGD ED+TWLE+ND DWSE +L D + K FD SQ
Sbjct: 432 EALMLLQKNGLQKKNPSISVVATLFGDGEDITWLEQNDYVDWSEAELSDEPVSKLFDSSQ 491
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++AIALG+NKKRP++I+QGPPGTGKTG+LKE+I AVQQGERVLVTAPTNAAVDNMVEKL
Sbjct: 492 RRAIALGVNKKRPVMIVQGPPGTGKTGMLKEVITLAVQQGERVLVTAPTNAAVDNMVEKL 551
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
+GLNIVRVGNPARIS AVASKSLGEIV SKLASF AE ERKKSDLRKDLRQCL+DD L
Sbjct: 552 LHLGLNIVRVGNPARISSAVASKSLGEIVNSKLASFRAELERKKSDLRKDLRQCLRDDVL 611
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------ 413
AAGIRQLLKQLGKTLKKKEKETVKE+LS+AQVV ATN GAADPLIRRL+TFDLV
Sbjct: 612 AAGIRQLLKQLGKTLKKKEKETVKEILSNAQVVFATNIGAADPLIRRLETFDLVVIDEAG 671
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
GKRCIL+GD CQLAPV+LSRKALEGG+GVSLLERAA+LH+GVLATKL
Sbjct: 672 QSIEPSCWIPILQGKRCILSGDPCQLAPVVLSRKALEGGLGVSLLERAASLHDGVLATKL 731
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
TTQYRMND IA WASKEMYGG L S+ +VASHLL+D+PFVK TWITQCPL+LLDTR+PYG
Sbjct: 732 TTQYRMNDVIAGWASKEMYGGWLKSAPSVASHLLIDSPFVKATWITQCPLVLLDTRMPYG 791
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
SLS+GCEE LD AGTGS YNEGEA+IVV+HV SLI AGVSP AIAVQSPYVAQVQ LRER
Sbjct: 792 SLSVGCEERLDPAGTGSLYNEGEADIVVNHVISLIYAGVSPMAIAVQSPYVAQVQLLRER 851
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
LDD P A GVEVATIDSFQGREADAVIISMVRSN LGAVGFLGDSRRMNVAITRA KHVA
Sbjct: 852 LDDFPVADGVEVATIDSFQGREADAVIISMVRSNNLGAVGFLGDSRRMNVAITRARKHVA 911
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSI 689
VVCDSSTICHNTFLARLLRHIRYFGRVKHA+PGS GGSGLG+DPMLP +
Sbjct: 912 VVCDSSTICHNTFLARLLRHIRYFGRVKHADPGSLGGSGLGLDPMLPYL 960
>gi|9758800|dbj|BAB09253.1| DNA helicase-like [Arabidopsis thaliana]
Length = 750
Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/709 (81%), Positives = 629/709 (88%), Gaps = 20/709 (2%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
MD E+VK IQ R+DEFT +MS+LL++ERD ELE TQEEL+ VPTPDE+SDSSKPIEFLV
Sbjct: 41 MDSEKVKAIQERIDEFTSQMSQLLQVERDTELEVTQEELDVVPTPDESSDSSKPIEFLVR 100
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG APQELCDTICNL+ VSTSTGLGGMHLVLF+V GNHRLPPTTLSPGDMVC+RVCDSRG
Sbjct: 101 HGDAPQELCDTICNLYAVSTSTGLGGMHLVLFKVGGNHRLPPTTLSPGDMVCIRVCDSRG 160
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A AT+C QGFVHNLGEDGC+I VALESRHGDPTFSKLFGKSVRIDRI GLAD LTYERNC
Sbjct: 161 AGATACTQGFVHNLGEDGCSIGVALESRHGDPTFSKLFGKSVRIDRIHGLADALTYERNC 220
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL-DGIMGKTFDDSQ 239
EALMLLQKNGL K+NPSI+ V TLFGD ED+TWLE+ND DWSE +L D + K FD SQ
Sbjct: 221 EALMLLQKNGLQKKNPSISVVATLFGDGEDITWLEQNDYVDWSEAELSDEPVSKLFDSSQ 280
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++AIALG+NKKRP++I+QGPPGTGKTG+LKE+I AVQQGERVLVTAPTNAAVDNMVEKL
Sbjct: 281 RRAIALGVNKKRPVMIVQGPPGTGKTGMLKEVITLAVQQGERVLVTAPTNAAVDNMVEKL 340
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
+GLNIVRVGNPARIS AVASKSLGEIV SKLASF AE ERKKSDLRKDLRQCL+DD L
Sbjct: 341 LHLGLNIVRVGNPARISSAVASKSLGEIVNSKLASFRAELERKKSDLRKDLRQCLRDDVL 400
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------ 413
AAGIRQLLKQLGKTLKKKEKETVKE+LS+AQVV ATN GAADPLIRRL+TFDLV
Sbjct: 401 AAGIRQLLKQLGKTLKKKEKETVKEILSNAQVVFATNIGAADPLIRRLETFDLVVIDEAG 460
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
GKRCIL+GD CQLAPV+LSRKALEGG+GVSLLERAA+LH+GVLATKL
Sbjct: 461 QSIEPSCWIPILQGKRCILSGDPCQLAPVVLSRKALEGGLGVSLLERAASLHDGVLATKL 520
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
TTQYRMND IA WASKEMYGG L S+ +VASHLL+D+PFVK TWITQCPL+LLDTR+PYG
Sbjct: 521 TTQYRMNDVIAGWASKEMYGGWLKSAPSVASHLLIDSPFVKATWITQCPLVLLDTRMPYG 580
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
SLS+GCEE LD AGTGS YNEGEA+IVV+HV SLI AGVSP AIAVQSPYVAQVQ LRER
Sbjct: 581 SLSVGCEERLDPAGTGSLYNEGEADIVVNHVISLIYAGVSPMAIAVQSPYVAQVQLLRER 640
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
LDD P A GVEVATIDSFQGREADAVIISMVRSN LGAVGFLGDSRRMNVAITRA KHVA
Sbjct: 641 LDDFPVADGVEVATIDSFQGREADAVIISMVRSNNLGAVGFLGDSRRMNVAITRARKHVA 700
Query: 641 VVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPMLPSI 689
VVCDSSTICHNTFLARLLRHIRYFGRVKHA+PGS GGSGLG+DPMLP +
Sbjct: 701 VVCDSSTICHNTFLARLLRHIRYFGRVKHADPGSLGGSGLGLDPMLPYL 749
>gi|115478052|ref|NP_001062621.1| Os09g0130800 [Oryza sativa Japonica Group]
gi|113630854|dbj|BAF24535.1| Os09g0130800 [Oryza sativa Japonica Group]
gi|215694894|dbj|BAG90085.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641090|gb|EEE69222.1| hypothetical protein OsJ_28445 [Oryza sativa Japonica Group]
Length = 981
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/717 (69%), Positives = 594/717 (82%), Gaps = 27/717 (3%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSS-KPIEFLV 59
+ L++ + +Q+++++F ++MS+LL IERDAELEFTQEELNA P D NS KP+E+LV
Sbjct: 265 ISLDKTRLMQTKIEDFVKKMSDLLHIERDAELEFTQEELNATPVMDGNSKKPLKPVEYLV 324
Query: 60 SHGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSR 119
+HG++ QE CDTICNL V+S+STGL G HLVLFRV+ NHRLPPTTLSPGDMVC+R CD+R
Sbjct: 325 THGQSQQEQCDTICNLNVISSSTGLDGQHLVLFRVKDNHRLPPTTLSPGDMVCIRTCDNR 384
Query: 120 GACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERN 179
G TSC+QGF++NLGEDGC+I+V L+SR GDPTFSKLFGK+VRIDRIQ LAD LTYERN
Sbjct: 385 GEITTSCMQGFIYNLGEDGCSITVTLKSRRGDPTFSKLFGKNVRIDRIQALADALTYERN 444
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL--DGIMGKT--- 234
CEALMLLQ+ GL K+N SI V TLFGDKED+ +E+N+LADW E + D ++ K
Sbjct: 445 CEALMLLQRKGLQKKNSSIGVVATLFGDKEDMMMMEQNNLADWGESTIHDDELLKKNKYD 504
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
FD SQ KAI LGLN KRP+LIIQGPPGTGKTGLL +IA AV++GERVLVTAP+NAAVDN
Sbjct: 505 FDASQLKAITLGLNNKRPVLIIQGPPGTGKTGLLSYLIACAVRKGERVLVTAPSNAAVDN 564
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
MVEKLSD GL+ VRVGNPARISP+VAS+SLGE+V +L F EFERKKSDLRKDL+ C+
Sbjct: 565 MVEKLSDTGLDTVRVGNPARISPSVASRSLGELVNRRLQKFTEEFERKKSDLRKDLKHCI 624
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
+DD+LAAGIRQLLKQLGK KKKEKE ++EVLS+A VVL+TN GAADPL+RR+ FDLV
Sbjct: 625 QDDTLAAGIRQLLKQLGKNFKKKEKEIIREVLSNADVVLSTNIGAADPLVRRIGCFDLVI 684
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
GKRCILAGDQ QLAPV+LSR+A++GG+ +SLLERA++LH +
Sbjct: 685 IDEAGQAIEPSCWIPILQGKRCILAGDQRQLAPVVLSREAMQGGLAMSLLERASSLHNEL 744
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
L TKLTTQYRM+D+IASWAS EMY G L SS +VASHLL D PF+K TWIT+C LLLDT
Sbjct: 745 LTTKLTTQYRMHDSIASWASNEMYDGFLKSSPSVASHLLADYPFIKETWITRCAFLLLDT 804
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
R+PYGSL++ CEEHLD AGTGSFYN GEA++V HV +L+ GVSP+AIAVQSPY+AQVQ
Sbjct: 805 RMPYGSLNIDCEEHLDPAGTGSFYNNGEADVVSQHVLNLVQCGVSPTAIAVQSPYIAQVQ 864
Query: 576 HLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+RL+D PEA+GVEV+TIDSFQGREADAV+ISMVRSNTLGAVGFLGD+RRMNVAITRA
Sbjct: 865 LLRDRLEDYPEASGVEVSTIDSFQGREADAVVISMVRSNTLGAVGFLGDNRRMNVAITRA 924
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGG-SGLGMD-PMLPSIS 690
+HVA+VCDSSTIC+N FLARLLRHIR G+V+H EPGSFGG SGLG P LPSIS
Sbjct: 925 RRHVALVCDSSTICNNAFLARLLRHIRQHGQVRHVEPGSFGGDSGLGYTPPALPSIS 981
>gi|218201695|gb|EEC84122.1| hypothetical protein OsI_30457 [Oryza sativa Indica Group]
Length = 981
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/717 (69%), Positives = 593/717 (82%), Gaps = 27/717 (3%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSS-KPIEFLV 59
+ L++ + +Q+++++F ++MS+LL IERDAELEFTQEELNA P D NS KP+E+LV
Sbjct: 265 ISLDKTRLMQTKIEDFVKKMSDLLHIERDAELEFTQEELNATPVMDGNSKKPLKPVEYLV 324
Query: 60 SHGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSR 119
+HG++ QE CDTICNL V+S+STGL G HLVLFRV+ NHRLPPTTLSPGDMVC+R CD+R
Sbjct: 325 THGQSQQEQCDTICNLNVISSSTGLDGQHLVLFRVKDNHRLPPTTLSPGDMVCIRTCDNR 384
Query: 120 GACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERN 179
G TSC+QGF++NLGEDGC+I+V L+SR GDPTFSKLFGK+VRIDRIQ LAD LTYERN
Sbjct: 385 GEITTSCMQGFIYNLGEDGCSITVTLKSRRGDPTFSKLFGKNVRIDRIQALADALTYERN 444
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL--DGIMGKT--- 234
CEALMLLQ+ GL K+N SI V TLFGDKED+ +E+N+LADW E + D ++ K
Sbjct: 445 CEALMLLQRKGLQKKNSSIGVVATLFGDKEDMMMMEQNNLADWGESTIHDDELLKKNKYD 504
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
FD SQ KAI LGLN KRP+LIIQGPPGTGKTGLL +IA AV++GERVLVTAP+NAAVDN
Sbjct: 505 FDASQLKAITLGLNNKRPVLIIQGPPGTGKTGLLSYLIACAVRKGERVLVTAPSNAAVDN 564
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
MVEKLSD GL+ VRVGNPARISP+VAS+SLGE+V +L F EFERKKSDLRKDL+ C+
Sbjct: 565 MVEKLSDTGLDTVRVGNPARISPSVASRSLGELVNRRLQKFTEEFERKKSDLRKDLKHCI 624
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
+DD+LAAGIRQLLKQLGK KKKEKE ++EVLS+A VVL+TN GAADPL+RR+ FDLV
Sbjct: 625 QDDTLAAGIRQLLKQLGKNFKKKEKEIIREVLSNADVVLSTNIGAADPLVRRIGCFDLVI 684
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
GKRCILAGDQ QLAPV+LSR+A++GG+ +SLLERA++LH +
Sbjct: 685 IDEAGQAIEPSCWIPILQGKRCILAGDQRQLAPVVLSREAMQGGLAMSLLERASSLHNEL 744
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
L TKLTTQYRM+D+IASWAS EMY G L SS +V SHLL D PF+K TWIT+C LLLDT
Sbjct: 745 LTTKLTTQYRMHDSIASWASNEMYDGFLKSSPSVVSHLLADYPFIKETWITRCAFLLLDT 804
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
R+PYGSL++ CEEHLD AGTGSFYN GEA++V HV +L+ GVSP+AIAVQSPY+AQVQ
Sbjct: 805 RMPYGSLNIDCEEHLDPAGTGSFYNNGEADVVSQHVLNLVQCGVSPTAIAVQSPYIAQVQ 864
Query: 576 HLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+RL+D PEA+GVEV+TIDSFQGREADAV+ISMVRSNTLGAVGFLGD+RRMNVAITRA
Sbjct: 865 LLRDRLEDYPEASGVEVSTIDSFQGREADAVVISMVRSNTLGAVGFLGDNRRMNVAITRA 924
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGG-SGLGMD-PMLPSIS 690
+HVA+VCDSSTIC+N FLARLLRHIR G+V+H EPGSFGG SGLG P LPSIS
Sbjct: 925 RRHVALVCDSSTICNNAFLARLLRHIRQHGQVRHVEPGSFGGDSGLGYTPPALPSIS 981
>gi|41053136|dbj|BAD08079.1| putative DNA helicase [Oryza sativa Japonica Group]
Length = 794
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/714 (70%), Positives = 587/714 (82%), Gaps = 24/714 (3%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
+ L +VK +Q R++++ MS+LL IERD ELEFTQEELNA P D++S+ KP+E+LVS
Sbjct: 81 VSLNKVKLMQRRIEQYVTHMSDLLCIERDVELEFTQEELNAAPMLDDDSEPPKPVEYLVS 140
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG++ QE CDTICNL V+S+STGLGG+HLVLFR+EG H+LPPTTLSPGDMVCVR C+SRG
Sbjct: 141 HGQSQQEQCDTICNLNVISSSTGLGGLHLVLFRIEGGHKLPPTTLSPGDMVCVRTCNSRG 200
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
ATSC+QGFV+NLGEDGC+I++ALESRHGDPTFS+LFGKSVRIDRIQGLAD LTYERN
Sbjct: 201 EGATSCMQGFVYNLGEDGCSITLALESRHGDPTFSRLFGKSVRIDRIQGLADALTYERNL 260
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL-DGIMGKTF--DD 237
EAL++LQ+NGL K N SI V TLFGD +DV +E+N L DW E D + + + D
Sbjct: 261 EALIILQRNGLQKSNASIGVVATLFGDNKDVMKMEQNHLTDWGESSAPDPRISERYALDA 320
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ KA++LGLNKKRP+LIIQGPPGTGKT LL E+I RAVQQGE VLVTAP+NAAVDNMVE
Sbjct: 321 SQLKALSLGLNKKRPVLIIQGPPGTGKTVLLTELIVRAVQQGENVLVTAPSNAAVDNMVE 380
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
+LS+ GLNIVRVGNPARISP+VASKSL EIV +L F E ERK+SDLRKDL C++DD
Sbjct: 381 RLSNTGLNIVRVGNPARISPSVASKSLAEIVNGRLEQFRKELERKRSDLRKDLSYCIEDD 440
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
SLAAGIRQLLKQLG+ L+KKEKE ++E LS AQVVL+TNTGAADPLIRR FDLV
Sbjct: 441 SLAAGIRQLLKQLGRDLEKKEKEMIREALSEAQVVLSTNTGAADPLIRRTCCFDLVIIDE 500
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
GKRCILAGD CQLAPVILSRKAL+GG+G SLLERA++LH G+L T
Sbjct: 501 AGQAIEPSCWIPILQGKRCILAGDHCQLAPVILSRKALDGGLGKSLLERASSLHNGLLTT 560
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
+LT Q+RMND+IASWASKEMY G L SS +VAS L D+P VK TWIT+CPLLLLDTR+P
Sbjct: 561 RLTVQHRMNDSIASWASKEMYHGLLKSSHSVASQTLADSPVVKATWITRCPLLLLDTRMP 620
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
YG+L GC E +DL+GTGSFYN+GEA+IV HV +L+ GVSP+AIAVQSPY+AQVQ LR
Sbjct: 621 YGALDTGCGEQIDLSGTGSFYNDGEADIVTQHVLNLVHCGVSPTAIAVQSPYIAQVQLLR 680
Query: 579 ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
ERL++ P +GVEV+TIDSFQGREADAV+ISMVRSN LGAVGFLGDSRRMNVAITRAC+H
Sbjct: 681 ERLEEYPGLSGVEVSTIDSFQGREADAVVISMVRSNPLGAVGFLGDSRRMNVAITRACRH 740
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGG-SGLGM-DPMLPSIS 690
V VVCD+STICH+TFLARLLRHIR +G+VKH PGS G SGLG P LPSIS
Sbjct: 741 VTVVCDTSTICHSTFLARLLRHIRRYGQVKHVVPGSLDGVSGLGFSQPTLPSIS 794
>gi|218191424|gb|EEC73851.1| hypothetical protein OsI_08612 [Oryza sativa Indica Group]
Length = 979
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/714 (70%), Positives = 586/714 (82%), Gaps = 24/714 (3%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
+ L +VK +Q R++++ MS+LL IERD ELEFTQEELNA P D +S+ KP+E+LVS
Sbjct: 266 VSLNKVKLMQRRIEQYVTHMSDLLCIERDVELEFTQEELNASPMLDNDSEPPKPVEYLVS 325
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG++ QE CDTICNL V+S+STGLGG+HLVLFR+EG H+LPPTTLSPGDMVCVR C+SRG
Sbjct: 326 HGQSQQEQCDTICNLNVISSSTGLGGLHLVLFRIEGGHKLPPTTLSPGDMVCVRTCNSRG 385
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
ATSC+QGFV+NLGEDGC+I++ALESRHGDPTFS+LFGKSVRIDRIQGLAD LTYERN
Sbjct: 386 EGATSCMQGFVYNLGEDGCSITLALESRHGDPTFSRLFGKSVRIDRIQGLADALTYERNL 445
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL-DGIMGKTF--DD 237
EAL++LQ+NGL K N SI V TLFGD +DV +E+N L DW E D + + + D
Sbjct: 446 EALIILQRNGLQKSNASIGVVATLFGDNKDVMKMEQNHLTDWGESSAPDPRISERYALDA 505
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ KA++LGLNKKRP+LIIQGPPGTGKT LL E+I RAVQQGE VLVTAP+NAAVDNMVE
Sbjct: 506 SQLKALSLGLNKKRPVLIIQGPPGTGKTVLLTELIVRAVQQGENVLVTAPSNAAVDNMVE 565
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
+LS+ GLNIVRVGNPARISP+VASKSL EIV +L F E ERK+SDLRKDL C++DD
Sbjct: 566 RLSNTGLNIVRVGNPARISPSVASKSLAEIVNRRLEQFRKELERKRSDLRKDLSYCIEDD 625
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
SLAAGIRQLLKQLG+ L+KKEKE ++EVLS AQVVL+TNTGAADPLIRR FDLV
Sbjct: 626 SLAAGIRQLLKQLGRDLEKKEKEMIREVLSEAQVVLSTNTGAADPLIRRTCCFDLVIIDE 685
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
GKRCILAGD CQLAPVILSRK L+GG+G SLLERA++LH G+L T
Sbjct: 686 AGQAIEPSCWIPILQGKRCILAGDHCQLAPVILSRKVLDGGLGKSLLERASSLHNGLLTT 745
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
+LT Q+RMND+IASWASKEMY G L SS +VAS L D+P VK TWIT+CPLLLLDTR+P
Sbjct: 746 RLTVQHRMNDSIASWASKEMYHGLLKSSHSVASQTLADSPVVKATWITRCPLLLLDTRMP 805
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
YG+L GC E +DLAGTGSFYN+GEA+IV HV +L+ GVSP+AIAVQSPY+AQVQ LR
Sbjct: 806 YGALDTGCGEQIDLAGTGSFYNDGEADIVTQHVLNLVHCGVSPTAIAVQSPYIAQVQLLR 865
Query: 579 ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
ERL++ P +GVEV+TIDSFQGREADAV+ISMVRSN LGAVGFLGDSRRMNVAITRAC+H
Sbjct: 866 ERLEEYPGLSGVEVSTIDSFQGREADAVVISMVRSNPLGAVGFLGDSRRMNVAITRACRH 925
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGG-SGLGM-DPMLPSIS 690
V VVCD+STICH+TFLARLLRHIR +G+VKH PGS G SGLG P LPSIS
Sbjct: 926 VTVVCDTSTICHSTFLARLLRHIRRYGQVKHVVPGSLDGVSGLGFSQPTLPSIS 979
>gi|222623514|gb|EEE57646.1| hypothetical protein OsJ_08074 [Oryza sativa Japonica Group]
Length = 980
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/714 (70%), Positives = 587/714 (82%), Gaps = 24/714 (3%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
+ L +VK +Q R++++ MS+LL IERD ELEFTQEELNA P D++S+ KP+E+LVS
Sbjct: 267 VSLNKVKLMQRRIEQYVTHMSDLLCIERDVELEFTQEELNAAPMLDDDSEPPKPVEYLVS 326
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG++ QE CDTICNL V+S+STGLGG+HLVLFR+EG H+LPPTTLSPGDMVCVR C+SRG
Sbjct: 327 HGQSQQEQCDTICNLNVISSSTGLGGLHLVLFRIEGGHKLPPTTLSPGDMVCVRTCNSRG 386
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
ATSC+QGFV+NLGEDGC+I++ALESRHGDPTFS+LFGKSVRIDRIQGLAD LTYERN
Sbjct: 387 EGATSCMQGFVYNLGEDGCSITLALESRHGDPTFSRLFGKSVRIDRIQGLADALTYERNL 446
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL-DGIMGKTF--DD 237
EAL++LQ+NGL K N SI V TLFGD +DV +E+N L DW E D + + + D
Sbjct: 447 EALIILQRNGLQKSNASIGVVATLFGDNKDVMKMEQNHLTDWGESSAPDPRISERYALDA 506
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ KA++LGLNKKRP+LIIQGPPGTGKT LL E+I RAVQQGE VLVTAP+NAAVDNMVE
Sbjct: 507 SQLKALSLGLNKKRPVLIIQGPPGTGKTVLLTELIVRAVQQGENVLVTAPSNAAVDNMVE 566
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
+LS+ GLNIVRVGNPARISP+VASKSL EIV +L F E ERK+SDLRKDL C++DD
Sbjct: 567 RLSNTGLNIVRVGNPARISPSVASKSLAEIVNGRLEQFRKELERKRSDLRKDLSYCIEDD 626
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
SLAAGIRQLLKQLG+ L+KKEKE ++E LS AQVVL+TNTGAADPLIRR FDLV
Sbjct: 627 SLAAGIRQLLKQLGRDLEKKEKEMIREALSEAQVVLSTNTGAADPLIRRTCCFDLVIIDE 686
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
GKRCILAGD CQLAPVILSRKAL+GG+G SLLERA++LH G+L T
Sbjct: 687 AGQAIEPSCWIPILQGKRCILAGDHCQLAPVILSRKALDGGLGKSLLERASSLHNGLLTT 746
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
+LT Q+RMND+IASWASKEMY G L SS +VAS L D+P VK TWIT+CPLLLLDTR+P
Sbjct: 747 RLTVQHRMNDSIASWASKEMYHGLLKSSHSVASQTLADSPVVKATWITRCPLLLLDTRMP 806
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
YG+L GC E +DL+GTGSFYN+GEA+IV HV +L+ GVSP+AIAVQSPY+AQVQ LR
Sbjct: 807 YGALDTGCGEQIDLSGTGSFYNDGEADIVTQHVLNLVHCGVSPTAIAVQSPYIAQVQLLR 866
Query: 579 ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
ERL++ P +GVEV+TIDSFQGREADAV+ISMVRSN LGAVGFLGDSRRMNVAITRAC+H
Sbjct: 867 ERLEEYPGLSGVEVSTIDSFQGREADAVVISMVRSNPLGAVGFLGDSRRMNVAITRACRH 926
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGG-SGLGM-DPMLPSIS 690
V VVCD+STICH+TFLARLLRHIR +G+VKH PGS G SGLG P LPSIS
Sbjct: 927 VTVVCDTSTICHSTFLARLLRHIRRYGQVKHVVPGSLDGVSGLGFSQPTLPSIS 980
>gi|242062790|ref|XP_002452684.1| hypothetical protein SORBIDRAFT_04g030630 [Sorghum bicolor]
gi|241932515|gb|EES05660.1| hypothetical protein SORBIDRAFT_04g030630 [Sorghum bicolor]
Length = 981
Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/714 (70%), Positives = 582/714 (81%), Gaps = 24/714 (3%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
+ L++V+ +Q+ ++EF + MS+LLRIERD ELEFTQ ELNAVP D++S KP+E+LVS
Sbjct: 268 ISLKKVRLMQTSIEEFVRHMSDLLRIERDVELEFTQLELNAVPMLDDDSKPPKPVEYLVS 327
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG+A QE CDTICNL V+S+STGLGG+HLVLFRVEG H+LPPTTLSPGDMVCVR C+SRG
Sbjct: 328 HGQAQQEQCDTICNLNVISSSTGLGGLHLVLFRVEGGHKLPPTTLSPGDMVCVRTCNSRG 387
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
ATSC QGFV+NLGEDGC+I+VALESRHGD TFS+LFGKSVRIDRIQGLAD+L Y+RN
Sbjct: 388 EGATSCKQGFVYNLGEDGCSITVALESRHGDATFSRLFGKSVRIDRIQGLADSLRYKRNL 447
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVK---LDGIMGKTFDD 237
EALMLL++NGL + N SIA V TLFGD +DV + +N+L DW E L+ +D
Sbjct: 448 EALMLLERNGLQEDNVSIAVVATLFGDSKDVVKMAKNNLTDWDESSGPDLNLSERYAYDA 507
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ +A+ LGLNKKRP+LIIQGPPGTGKT LL E+I RAV+QGERVLVTAP+NAAVD MVE
Sbjct: 508 SQLRALKLGLNKKRPVLIIQGPPGTGKTVLLTELIVRAVKQGERVLVTAPSNAAVDKMVE 567
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
LS GLNIVRVGNP R+SP VASKSLGEIV +L F E ERK++DLRKDLRQC++DD
Sbjct: 568 SLSRTGLNIVRVGNPVRLSPFVASKSLGEIVNCRLRQFRKELERKRTDLRKDLRQCIEDD 627
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
SLAAGIRQLLKQLGK L+ KEKET++EVLS AQVVL+TNTGAADPL+RR +FDLV
Sbjct: 628 SLAAGIRQLLKQLGKDLENKEKETIREVLSDAQVVLSTNTGAADPLVRRTGSFDLVIIDE 687
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
GKRCILAGD CQLAPV+LSRKAL+GG+G SLLE A++LH+G+L T
Sbjct: 688 AGQAIEPACWIPILQGKRCILAGDHCQLAPVVLSRKALDGGLGKSLLETASSLHDGLLTT 747
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
+LT QYRM+D+IA WASKEMY G L SS VASHLL D+P VK TWIT+CPLLLLDTR+P
Sbjct: 748 RLTVQYRMHDSIAMWASKEMYHGLLKSSDLVASHLLADSPVVKATWITRCPLLLLDTRMP 807
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
G+L++GC+EHLD AGTGSFYNEGEA+IV V +L+ GVSPS I VQSPY+AQVQ LR
Sbjct: 808 NGALNIGCKEHLDPAGTGSFYNEGEADIVTQQVLNLVHCGVSPSTIVVQSPYIAQVQLLR 867
Query: 579 ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
E+L + P VEV+TIDSFQGREADAVIISMVRSN LGAVGFLGDSRR+NVAITRA KH
Sbjct: 868 EKLQEYPGLCPVEVSTIDSFQGREADAVIISMVRSNPLGAVGFLGDSRRINVAITRARKH 927
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSF-GGSGLGM-DPMLPSIS 690
V VVCD+STICH+TFLARLLRHIR +G+VKH PGS G SGLG P LPSIS
Sbjct: 928 VTVVCDTSTICHSTFLARLLRHIRRYGQVKHVAPGSLDGASGLGFSQPTLPSIS 981
>gi|326507228|dbj|BAJ95691.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 980
Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/717 (68%), Positives = 594/717 (82%), Gaps = 27/717 (3%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSS-KPIEFLV 59
+ L++ + +Q+++++F ++MS+LL IERDAELEFTQEELNA+PT D + KP+E+LV
Sbjct: 264 ISLDKTRLMQTKIEDFVKKMSDLLNIERDAELEFTQEELNAIPTTDGAAKQPLKPVEYLV 323
Query: 60 SHGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSR 119
SHG+A QE CDT+CNL V+STSTGLGG+ LVLFRVEG H+LPP+TLSPGDMVCVR C+++
Sbjct: 324 SHGQAEQEQCDTVCNLNVISTSTGLGGLRLVLFRVEGTHKLPPSTLSPGDMVCVRTCNNQ 383
Query: 120 GACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERN 179
G TSC+QGF+HNLGEDGC+I+V+L+SR GDPTFSK GKSVRIDRIQ LAD LTYERN
Sbjct: 384 GEVGTSCVQGFIHNLGEDGCSITVSLKSRPGDPTFSKFSGKSVRIDRIQALADGLTYERN 443
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLD--GIMGK---T 234
CEAL+LLQ+ GL K N SI V TLFGDKED+T LE+N+L DW E + G++ K
Sbjct: 444 CEALILLQRKGLQKTNASIGVVATLFGDKEDMTMLEQNNLTDWGESAIQDAGLLRKHKYD 503
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
FD SQ +AI+LGLNKKRP+L+IQGPPGTGKTGLL +I AVQQGERVLVTAP+NAAVDN
Sbjct: 504 FDASQSQAISLGLNKKRPVLVIQGPPGTGKTGLLSYLIDCAVQQGERVLVTAPSNAAVDN 563
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
MVEKLS GLNIVRVGNPARISP+V+S+SLGE+VK +L F EF+RKKS+LRKDL+QCL
Sbjct: 564 MVEKLSGTGLNIVRVGNPARISPSVSSRSLGELVKRRLEKFTQEFQRKKSNLRKDLKQCL 623
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
+DDSLA+GIRQLLK+LGK +KKE E +KEVLS+A VVL+TN GAADPLI+ + FDLV
Sbjct: 624 QDDSLASGIRQLLKKLGKNFRKKENEIIKEVLSNADVVLSTNIGAADPLIKEIGFFDLVI 683
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
GKRCILAGDQ QLAPVILSR+A++GG+G+SLLERA++LH+ +
Sbjct: 684 IDEAGQAIEPSCWIPILRGKRCILAGDQHQLAPVILSREAMQGGLGMSLLERASSLHDEL 743
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
L TKLT QYRM+++IA+WAS EMY G L SS +VAS LLVD P ++ TWIT+C LLLLDT
Sbjct: 744 LTTKLTMQYRMHESIANWASNEMYFGLLKSSPSVASRLLVDYPSIQETWITRCALLLLDT 803
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
R+PYGSL++ CEE+LDLAGTGSFYN GEA+IV HV +L+ GVSP++IAVQSPY+AQVQ
Sbjct: 804 RMPYGSLNIDCEENLDLAGTGSFYNSGEADIVAQHVVNLVLCGVSPTSIAVQSPYIAQVQ 863
Query: 576 HLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+RL++ PEA GVEV+TIDSFQGREADAV+ISMVRSN+LGAVGFLGD+RRMNVAITRA
Sbjct: 864 LLRDRLEEYPEALGVEVSTIDSFQGREADAVVISMVRSNSLGAVGFLGDNRRMNVAITRA 923
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGS-GLGMD-PMLPSIS 690
+HVA+VCDS TIC+N FLARLLRHIR G+V+H EPGS+GG GLG P LPSIS
Sbjct: 924 RRHVALVCDSFTICNNEFLARLLRHIRQHGQVRHVEPGSYGGDYGLGFSPPALPSIS 980
>gi|357155053|ref|XP_003576992.1| PREDICTED: DNA-binding protein SMUBP-2-like [Brachypodium
distachyon]
Length = 980
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/717 (68%), Positives = 586/717 (81%), Gaps = 27/717 (3%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDEN-SDSSKPIEFLV 59
+ L++ + +Q+++D+F ++MS+LL IERDAELEFTQEELNA P D KP+E+LV
Sbjct: 264 VSLDKTRLMQTKIDDFVKKMSDLLHIERDAELEFTQEELNATPKTDSRLKQPLKPVEYLV 323
Query: 60 SHGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSR 119
+HG+A QE CDT+CNL V+S+S GLGG+ LVLFRVEG H+LPP+TLSPG+MVCVR C++R
Sbjct: 324 NHGQAEQEQCDTVCNLNVISSSNGLGGLRLVLFRVEGTHKLPPSTLSPGNMVCVRTCNNR 383
Query: 120 GACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERN 179
G SC+QGFVHNLGEDG +I+VA +SR GDPTFSK GKSVRIDRIQ LAD LTYERN
Sbjct: 384 GEVGASCMQGFVHNLGEDGFSITVAFKSRGGDPTFSKFSGKSVRIDRIQALADGLTYERN 443
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSE--VKLDGIMGKT--- 234
CEALMLLQ+ GL K N SI AV TLFGDKED+ LE N++ADW E + +DG++ K
Sbjct: 444 CEALMLLQRKGLQKTNASIGAVATLFGDKEDMKMLENNNMADWGESAMPVDGLLEKYNYD 503
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
FD SQ AIALGLNKKRP+++IQGPPGTGKTGLL +I AVQQ ERVLVTAP+NAAVDN
Sbjct: 504 FDASQSHAIALGLNKKRPIVVIQGPPGTGKTGLLSNLIRCAVQQRERVLVTAPSNAAVDN 563
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
MVEKLS GLNIVRVGNP+RISP+V+SKSLGEIVK L F EF+ KKS+LRKDL C+
Sbjct: 564 MVEKLSGTGLNIVRVGNPSRISPSVSSKSLGEIVKRSLEKFTQEFQMKKSNLRKDLNHCI 623
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
+DDSLAAGIRQ LK+LGK +KKE ET+KE+LS+A+VVL+TN GAADPLI+ + FDLV
Sbjct: 624 QDDSLAAGIRQRLKKLGKNFRKKENETIKEILSNAEVVLSTNIGAADPLIKGIGFFDLVI 683
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
GKRCILAGDQ QLAPVILSR+A+EGG+G+SLL+RA++LH+G+
Sbjct: 684 IDEAGQAIEPSCWIPILQGKRCILAGDQHQLAPVILSREAMEGGLGISLLQRASSLHDGL 743
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
L T+LT QYRM+++IASWAS EMY G L SS +VAS LLVD PF++ TWIT+C LLLLDT
Sbjct: 744 LTTQLTMQYRMHESIASWASNEMYSGLLKSSPSVASRLLVDYPFIQETWITRCALLLLDT 803
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
R+PYGSL++ CEEHLD AGTGSFYN GEA+IVV HV +L+ GVSP+AIAVQSPY+AQVQ
Sbjct: 804 RMPYGSLNIDCEEHLDFAGTGSFYNNGEADIVVQHVLNLVLCGVSPTAIAVQSPYIAQVQ 863
Query: 576 HLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+ L++ PEA GVEV+TIDSFQGREADAV+ISMVRSN+LGAVGFLGDSRRMNVAITRA
Sbjct: 864 LLRDTLEEYPEAYGVEVSTIDSFQGREADAVVISMVRSNSLGAVGFLGDSRRMNVAITRA 923
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGG-SGLGMD-PMLPSIS 690
+HV +VCDSSTIC+N FLARLLRHIR G+V+H EPGS+GG SGLG P LPSIS
Sbjct: 924 RRHVVLVCDSSTICNNAFLARLLRHIRLNGQVRHVEPGSYGGDSGLGFSPPALPSIS 980
>gi|148906976|gb|ABR16632.1| unknown [Picea sitchensis]
Length = 691
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/691 (72%), Positives = 577/691 (83%), Gaps = 20/691 (2%)
Query: 20 MSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVS 79
MSELL IERDAELE TQEEL+A P PD +S S + IE+LV+HG+ QE CDTICNL VS
Sbjct: 1 MSELLCIERDAELEATQEELDAAPMPDTSSVSPRSIEYLVNHGQPQQEQCDTICNLHAVS 60
Query: 80 TSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGC 139
+STGLGGMHLV F VEG HRLPPTT+SPGDMVCVR+CDSRGA ATSC QGFVH+L ED
Sbjct: 61 SSTGLGGMHLVSFSVEGGHRLPPTTISPGDMVCVRICDSRGAGATSCTQGFVHSLCEDEG 120
Query: 140 TISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIA 199
I+VALESR+GDPTFSKL KS+RIDRI GLAD +TYERNCEALM+LQK GL K+NP+ A
Sbjct: 121 RITVALESRYGDPTFSKLSCKSLRIDRIHGLADAITYERNCEALMVLQKEGLKKKNPAAA 180
Query: 200 AVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTF-DDSQKKAIALGLNKKRPLLIIQG 258
V TLF +D+ W EN+L + +E L I K F DSQK+AI+LGLN++RP+L+IQG
Sbjct: 181 VVATLFEAGQDIYWPAENNLQNDAEEDLGEIQLKDFFGDSQKRAISLGLNRQRPVLVIQG 240
Query: 259 PPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPA 318
PPGTGKT +L E+I A ++GER+LVTAP+NAAVDNMVE+L+D+GLNIVRVGNP R+SPA
Sbjct: 241 PPGTGKTSVLTELICIASRKGERMLVTAPSNAAVDNMVERLADMGLNIVRVGNPVRMSPA 300
Query: 319 VASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKE 378
VASKSLG IV+++LASF E RK+ DL+ DLR CLKDDSLAAGIRQLLKQL KTLK+KE
Sbjct: 301 VASKSLGSIVENRLASFRRELARKRDDLKNDLRHCLKDDSLAAGIRQLLKQLKKTLKRKE 360
Query: 379 KETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCIL 419
+ETV E+LS+AQVVL TNTGAADPL+R+L +FDLV GKR IL
Sbjct: 361 EETVNEILSNAQVVLCTNTGAADPLVRKLASFDLVIIDEAGQAIEPSCWIPILQGKRTIL 420
Query: 420 AGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMY 479
AGD CQLAPVILSR+A+EGG+G+SLLERAA L+ G L+ L+ QYRMNDAIASWASKEMY
Sbjct: 421 AGDNCQLAPVILSRRAMEGGLGLSLLERAARLYAGGLSHMLSVQYRMNDAIASWASKEMY 480
Query: 480 GGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFY 539
GGSL SS VASHLLVD+PF+K TWITQCPLLLLDTR+PYGSLSLGCEEHLDLAGTGSFY
Sbjct: 481 GGSLQSSPAVASHLLVDSPFIKATWITQCPLLLLDTRMPYGSLSLGCEEHLDLAGTGSFY 540
Query: 540 NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQ 599
NEGEA+I+V HV SLI AGV P IAVQSPY+AQVQ LRERLD +PEAAG+ VA++DSFQ
Sbjct: 541 NEGEADILVQHVRSLIFAGVMPMDIAVQSPYIAQVQLLRERLDQIPEAAGIRVASVDSFQ 600
Query: 600 GREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
GREADAV+ISMVRSNTLGAVGFLGDSRR+NVAITRA KHVAVVCDSSTICHNTFLARLL+
Sbjct: 601 GREADAVVISMVRSNTLGAVGFLGDSRRINVAITRARKHVAVVCDSSTICHNTFLARLLK 660
Query: 660 HIRYFGRVKHAEPGSFGGSGLGMDPMLPSIS 690
HIR FGRV+HAEPG GSGL + P+LP I+
Sbjct: 661 HIRLFGRVRHAEPGGMDGSGLDITPLLPLIN 691
>gi|357137188|ref|XP_003570183.1| PREDICTED: DNA-binding protein SMUBP-2-like [Brachypodium
distachyon]
Length = 975
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/713 (68%), Positives = 585/713 (82%), Gaps = 24/713 (3%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
+ L++V+ +Q R+++F + MS+LLRIERD ELEFTQEELNA + NS+ KP+E+LVS
Sbjct: 262 ISLKKVRLMQDRIEDFVRHMSDLLRIERDVELEFTQEELNATTMLENNSEPPKPVEYLVS 321
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG+A QE CDTICNL V+S+STGLGG+HLV+FR+EG H+LPPTTLSPGDMVCVR C+SRG
Sbjct: 322 HGQAQQEQCDTICNLNVISSSTGLGGLHLVIFRIEGGHKLPPTTLSPGDMVCVRTCNSRG 381
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
ATSC+QGF++NLGEDGC+I+VALESRHGDPTFS+LFGKSVRIDRIQGLAD LTYERN
Sbjct: 382 EGATSCMQGFLYNLGEDGCSITVALESRHGDPTFSRLFGKSVRIDRIQGLADALTYERNL 441
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIM---GKTFDD 237
EALMLLQ+NGL K N SI+ V TLFGD +D+ +E+N L DW E+ L + FD
Sbjct: 442 EALMLLQRNGLQKSNASISVVATLFGDSKDMMKMEQNCLTDWGELSLPDLRLSERYAFDA 501
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ +AI+LGLNKKRP+L+IQGPPGTGKT LL E+I RAV+QGE VLVTAP+NAAVDNMVE
Sbjct: 502 SQLRAISLGLNKKRPVLVIQGPPGTGKTVLLAELIVRAVRQGENVLVTAPSNAAVDNMVE 561
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
+LS GLNIVRVGNPARISP+VASKSL EIV +L F+ E ERK+++LR+DLR C++DD
Sbjct: 562 RLSSTGLNIVRVGNPARISPSVASKSLAEIVNGRLGQFMKELERKRTNLREDLRDCIEDD 621
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
SLAAGIRQLLKQLG+ ++KKEKET+ EVLS AQVVL+TNTGAADP IR+ FDLV
Sbjct: 622 SLAAGIRQLLKQLGRDMEKKEKETIMEVLSDAQVVLSTNTGAADPHIRKAGCFDLVIIDE 681
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
GKRCILAGD CQLAP ILSRKALEGG+G S++ERA++LH+G+L +
Sbjct: 682 AGQAIEPSCWIPILQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASSLHDGLLNS 741
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
+L Q+RM+D+IASWASKEMY G L SS +V+SHLL D+P VK TWIT+CPLLLLDTR+P
Sbjct: 742 RLMVQHRMHDSIASWASKEMYHGLLKSSHSVSSHLLADSPVVKATWITRCPLLLLDTRMP 801
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
YG L++ C EHLD AGTGSFYN+GEA+IV HV +L+ GVSPSAIAVQSPY+AQVQ LR
Sbjct: 802 YGILNIDCVEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSAIAVQSPYIAQVQLLR 861
Query: 579 ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
E+ ++ P +GVE +TIDSFQGREADAV+ISMVRSN LGAVGF+GDSR MNVAITRA +H
Sbjct: 862 EKFEEYPGLSGVEASTIDSFQGREADAVVISMVRSNPLGAVGFMGDSRLMNVAITRARRH 921
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGG-SGLGMDPM-LPSI 689
V VVCD+STICH+TFLARLLRHIR G+VKH PGS G SGLG + LPSI
Sbjct: 922 VTVVCDTSTICHSTFLARLLRHIRRHGQVKHVAPGSLDGVSGLGFNQTSLPSI 974
>gi|242048802|ref|XP_002462147.1| hypothetical protein SORBIDRAFT_02g020475 [Sorghum bicolor]
gi|241925524|gb|EER98668.1| hypothetical protein SORBIDRAFT_02g020475 [Sorghum bicolor]
Length = 862
Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/716 (65%), Positives = 562/716 (78%), Gaps = 33/716 (4%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSD--SSKPIEFL 58
+ L+R + +Q+++DEF Q+M+ LL++ERDAEL+ TQ + + + D S KP+E+L
Sbjct: 151 ISLDRTRLMQAKIDEFVQKMTGLLQLERDAELDVTQTTQDELMSASSMMDGKSKKPVEYL 210
Query: 59 VSHGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDS 118
V+HG+A QE CDTICNL V+S+STGL G HLVLFRVEG+ +LPPT LSPGDMVCVR C+S
Sbjct: 211 VTHGQA-QEECDTICNLKVISSSTGLTGQHLVLFRVEGSQKLPPTRLSPGDMVCVRTCNS 269
Query: 119 RGACAT-SCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYE 177
+G AT SC++ FVHNLGEDGC+I+VAL+SR DPTFSK GK RIDRIQ LAD +TYE
Sbjct: 270 QGEVATTSCMEAFVHNLGEDGCSITVALKSRRSDPTFSKFLGKIARIDRIQALADAVTYE 329
Query: 178 RNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADW--SEVKLDGIMGK-- 233
RNCEALM+LQK GL KRN SI V TLFGDKEDV LE N+L D SEV DG++ +
Sbjct: 330 RNCEALMILQKRGLQKRNASIGVVATLFGDKEDVMKLEGNNLMDCGGSEVPDDGLLERHS 389
Query: 234 -TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+FD SQ +A+AL L+K+RP+L+IQGPPGTGKT LL +I ++GERVLVTAP+NAA+
Sbjct: 390 YSFDTSQSRALALALDKERPVLVIQGPPGTGKTRLLSYLITCVARRGERVLVTAPSNAAI 449
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN+VE LS GL IVRVGNP+RISP+V S SLGEIV +L F EFERKK LRKDL++
Sbjct: 450 DNIVESLSRSGLKIVRVGNPSRISPSVTSMSLGEIVTKRLEKFTQEFERKKYALRKDLKR 509
Query: 353 CLKDD-SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
C++DD SLA+GIRQ LK+LGK KK+EKE ++EVLS+A+VVL+TNTGAADPLIR + FD
Sbjct: 510 CIQDDDSLASGIRQRLKKLGKDYKKEEKEAIREVLSNAEVVLSTNTGAADPLIRGMGCFD 569
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
LV GKRCILAGD QLAPVILSR+A+EGG+G+SLLERA++LH
Sbjct: 570 LVIIDEAGQATEPSCWIPILQGKRCILAGDHRQLAPVILSREAMEGGLGISLLERASSLH 629
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
+G+L T LTTQYRM+++IASWASKEMY G L S VAS LLVD PFVK TW+TQC LLL
Sbjct: 630 DGLLTTTLTTQYRMHESIASWASKEMYDGLLQSFPPVASRLLVDYPFVKATWMTQCALLL 689
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
LDTR YGSL++ CEE LDLAGTGSFYN GEA+IV HVF+LI GV P++I VQSPY+A
Sbjct: 690 LDTRKEYGSLNIDCEESLDLAGTGSFYNNGEADIVAQHVFNLIQCGVPPTSIVVQSPYIA 749
Query: 573 QVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
QVQ LR RL++ P A+ VEV+TIDSFQGREADAV+ISMVRSN+LGAVGFLGD RRMNVAI
Sbjct: 750 QVQLLRGRLEEYPVASNVEVSTIDSFQGREADAVVISMVRSNSLGAVGFLGDIRRMNVAI 809
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMD-PMLP 687
TRA HVAVVCD+STIC+N FLARLLRHIR G+V+H EP SF G G D P LP
Sbjct: 810 TRARSHVAVVCDTSTICNNAFLARLLRHIRQHGQVRHVEPSSFDG---GFDLPALP 862
>gi|414884936|tpg|DAA60950.1| TPA: hypothetical protein ZEAMMB73_755312 [Zea mays]
Length = 737
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/707 (60%), Positives = 530/707 (74%), Gaps = 35/707 (4%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQE-ELNAVPTPDENSDSSKPIEFLV 59
+ LE+ + +Q+R+D F Q+M+ LLR+ERDAELE Q+ E++A T + P + +V
Sbjct: 25 VSLEKTRLMQARIDGFVQQMTGLLRLERDAELELAQDHEVSAAGTVMDG----MPKKPVV 80
Query: 60 SHGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSR 119
+HG+A QE DTICNL V+S+STGL G HLVLFR EG+HRLP T LSPGD VCVR CDS+
Sbjct: 81 AHGQA-QEDGDTICNLRVISSSTGLTGQHLVLFRAEGSHRLPATRLSPGDTVCVRACDSQ 139
Query: 120 G--ACATSCIQGFVHNLGEDGCTISVALESRHG-DPTFSKLFGKSVRIDRIQGLADTLTY 176
G A +T C+Q VHNLGEDG +I+VA SR G +P FS+ GK RIDRIQ LAD +TY
Sbjct: 140 GEVAASTPCLQASVHNLGEDGRSITVAFRSRRGGEPAFSRFPGKFARIDRIQALADAVTY 199
Query: 177 ERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL-DG----IM 231
ERNCEALM LQK GL KRN SI V TLFGDKED T E N L D + DG
Sbjct: 200 ERNCEALMALQKRGLQKRNASIGVVATLFGDKEDATKPERNSLTDRRGPEAPDGGSLETH 259
Query: 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAA 291
+FD SQ +A+AL L+K+RP+L+IQGPPGTGKT LL ++AR V++GERVLVTAP+NAA
Sbjct: 260 SHSFDTSQSRALALALDKERPVLVIQGPPGTGKTRLLSYLVARVVRRGERVLVTAPSNAA 319
Query: 292 VDNMVEKLSDVGL-NIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL 350
VDNM E LS GL NIVRVGNP+RISP+VA SLG+IV ++L EFE ++S LRKDL
Sbjct: 320 VDNMAESLSASGLKNIVRVGNPSRISPSVAPMSLGQIVATRLEKLTREFETRRSALRKDL 379
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-T 409
++ ++D + +RQ LK+LGK +K++KE V+EVL++A+VVL+TNTGAADPL+R
Sbjct: 380 KRRVQDGGDGSSVRQQLKRLGKDYRKEKKEAVREVLANAEVVLSTNTGAADPLVRGTGGC 439
Query: 410 FDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
FDLV GKRCILAGD QLAPV+LSR+A+EGG+G+SLLERA++
Sbjct: 440 FDLVIIDEAGQAIEPSCWIPMLQGKRCILAGDHRQLAPVVLSREAMEGGLGMSLLERASS 499
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
LH+G+LAT LTTQYRM+++IASWASKEMY G L S +VAS LLV+ P VK TW+TQC L
Sbjct: 500 LHDGLLATTLTTQYRMHESIASWASKEMYDGLLRSFPSVASRLLVNYPSVKVTWMTQCAL 559
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
LLLDTR YGSL++ CEE LD AGTGSFYN GEA+IV HHV +L+ GV P++I VQSPY
Sbjct: 560 LLLDTRRAYGSLNIDCEESLDPAGTGSFYNNGEADIVAHHVLNLVQCGVPPTSIVVQSPY 619
Query: 571 VAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
+AQVQ L++RL + P A VEV+TIDSFQGREADAV+ISMVRSN++G VGFL D RRMNV
Sbjct: 620 IAQVQLLQDRLQEYPMAFDVEVSTIDSFQGREADAVVISMVRSNSMGEVGFLADRRRMNV 679
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGG 677
AITRA HVAVVCD+STIC+N FLARLL HIR G+V+H +P S G
Sbjct: 680 AITRAKSHVAVVCDTSTICNNAFLARLLLHIRQHGQVQHVDPSSLDG 726
>gi|168051009|ref|XP_001777949.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670709|gb|EDQ57273.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 791
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/685 (58%), Positives = 514/685 (75%), Gaps = 21/685 (3%)
Query: 4 ERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGR 63
ERV IQS +D F R ELL+IERDAELE T + L + ++ +S I
Sbjct: 83 ERVAEIQSNVDSFVTRGLELLQIERDAELEATHQSLEGAASAIGSAPTSSGIAPRDKRDE 142
Query: 64 APQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSR-GAC 122
E CD+I NL ++TGLGGMHLV VEG LPPTT+SPGDMVCVR+ D R G
Sbjct: 143 QALESCDSITNLIATGSTTGLGGMHLVTLSVEGKGHLPPTTISPGDMVCVRISDRRRGGS 202
Query: 123 ATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEA 182
C++G V++L ED +I++A+E+R+GDPTFS+LFGKS+R+DRI LAD TY+R+CEA
Sbjct: 203 TMECMRGSVYSLAEDNNSIAIAIEARYGDPTFSRLFGKSLRLDRISALADATTYQRDCEA 262
Query: 183 LMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEEND-LADWSEVKLDGIMGKTFDDSQKK 241
L LQKNGL ++NP+ A V TLFG+ D+ WL +N L S V+ + D+SQK+
Sbjct: 263 LERLQKNGLKRQNPAAAVVATLFGEGPDICWLAQNGPLRPASPVQQSSLKEVRLDESQKR 322
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301
AI +GL++KRP+++IQGPPGTGKT ++ E+I +AV +GERVL TAPTNAAVDN+VE+L++
Sbjct: 323 AIEMGLDRKRPVVVIQGPPGTGKTSVVTELIEKAVMRGERVLATAPTNAAVDNIVERLAN 382
Query: 302 VGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAA 361
GLN+VRVGNPAR++PAV S+SL IV L +F + R++++LR DLR+CL +DS+AA
Sbjct: 383 AGLNVVRVGNPARVAPAVCSRSLSFIVDKSLTTFRGDLVRRRANLRSDLRECLDNDSVAA 442
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------- 413
GIRQ+LKQLGK+LK+KEKE + + LSSAQV+L TNTGA DPLIR+ + FDLV
Sbjct: 443 GIRQVLKQLGKSLKQKEKEAINDALSSAQVILCTNTGAGDPLIRKQEAFDLVVVDEAAQA 502
Query: 414 -----------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
G+RC+LAGD QLAP I+SR AL+GG+GVSL+ERA LH G+L+T L+T
Sbjct: 503 IEPSCWIPLLQGRRCVLAGDASQLAPTIMSRTALDGGLGVSLMERAGNLHSGLLSTMLST 562
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ AIA WAS EMYGGSL S+ VASHLL DTP VK T +T+ P+LLLDTRLP+GSL
Sbjct: 563 QYRMHSAIADWASHEMYGGSLRSAPAVASHLLRDTPGVKDTPVTKVPMLLLDTRLPFGSL 622
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD 582
GCEE LD AGTGSFYNEGEA+IVV H+ +L+ GV PS+IAVQSPY+AQVQ L +R++
Sbjct: 623 IPGCEERLDPAGTGSFYNEGEADIVVDHIRALLATGVEPSSIAVQSPYMAQVQLLCDRIE 682
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
++P A GV+VA++DSFQGREADAV++SMVRSN +G VGFLGD+RRMNVA+TRA KHV +V
Sbjct: 683 EIPGAEGVQVASVDSFQGREADAVVVSMVRSNNIGVVGFLGDNRRMNVAVTRARKHVTIV 742
Query: 643 CDSSTICHNTFLARLLRHIRYFGRV 667
CDS+T+ N+FL RLL+HIR FG V
Sbjct: 743 CDSTTVSRNSFLQRLLQHIRRFGEV 767
>gi|147867288|emb|CAN81193.1| hypothetical protein VITISV_022848 [Vitis vinifera]
Length = 806
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/582 (74%), Positives = 469/582 (80%), Gaps = 81/582 (13%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
M+L++ K IQSR+DEFT+RMSELL+IERD+ELEFTQEELNAVPTPDE+SDSSKPIEFLVS
Sbjct: 224 MELDKAKAIQSRIDEFTKRMSELLQIERDSELEFTQEELNAVPTPDESSDSSKPIEFLVS 283
Query: 61 HGRAPQELCDTICNLFVVSTS-------------------------------TGLGGMHL 89
HG+A QELCDTICNL VST TGLGGMHL
Sbjct: 284 HGQAQQELCDTICNLNAVSTFIGDLIDFVLQSYCNNRVHFLVNDLMFTRAVFTGLGGMHL 343
Query: 90 VLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRH 149
VLF+VEGNHRLPPTTLSPGDMVCVR+CDSRGA ATSC+QGFV +LG+DGC+ISVALESRH
Sbjct: 344 VLFKVEGNHRLPPTTLSPGDMVCVRICDSRGAGATSCMQGFVDSLGKDGCSISVALESRH 403
Query: 150 GDPTFSKLFGKSVRIDRIQGLADTLTYE------------------------------RN 179
GDPTFSKLFGKSVRIDRI GLAD LTYE RN
Sbjct: 404 GDPTFSKLFGKSVRIDRIHGLADALTYEISTFSGLLPYKRQKYRITSSLFRGMDMLRQRN 463
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIM-GKTFDDS 238
CEALMLLQKNGL K+NPSIA V TLFGDKEDV WLEENDL DW+EV LD ++ +DDS
Sbjct: 464 CEALMLLQKNGLQKKNPSIAVVATLFGDKEDVAWLEENDLVDWAEVGLDELLESGAYDDS 523
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
Q++AIALGLNKKRP+LIIQGPPGTGKT LLKE+IA AVQQGERVLVTAPTNAAVDNMVEK
Sbjct: 524 QRRAIALGLNKKRPILIIQGPPGTGKTVLLKELIALAVQQGERVLVTAPTNAAVDNMVEK 583
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
LS++G+NIVRVGNPARIS AVASKSLGEIV SKL +F+ EFERKKSDLRKDLR CLKDDS
Sbjct: 584 LSNIGVNIVRVGNPARISSAVASKSLGEIVNSKLENFLTEFERKKSDLRKDLRHCLKDDS 643
Query: 359 LAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----- 413
LAAGIRQLLKQLGK LKKKEKETVKEVLSSAQVVLATNTGAADP+IRRLD FDLV
Sbjct: 644 LAAGIRQLLKQLGKALKKKEKETVKEVLSSAQVVLATNTGAADPVIRRLDAFDLVIIDEA 703
Query: 414 --------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459
GKRCI+AGDQCQLAPVILSRKALEGG+GVSLLERAATLHE VLATK
Sbjct: 704 GQAIEPSCWIPILQGKRCIIAGDQCQLAPVILSRKALEGGLGVSLLERAATLHEEVLATK 763
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
LTTQYRMNDAIASWASKEMYGGSL SSS+V SHLLVD+PFVK
Sbjct: 764 LTTQYRMNDAIASWASKEMYGGSLKSSSSVFSHLLVDSPFVK 805
>gi|326490191|dbj|BAJ94169.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 786
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/523 (69%), Positives = 428/523 (81%), Gaps = 22/523 (4%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
+ L++V+ +Q R+++F + MS+LLRIERDAELEFTQEELNA D NS SKP+E+LV+
Sbjct: 263 ISLKKVRLMQDRIEDFVRHMSDLLRIERDAELEFTQEELNATTMLDNNSKPSKPVEYLVT 322
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG+A QE CDTICNL V+S+STGLGG+HLVLFR+EG H+LPPTTLSPGDMVCVR C+SRG
Sbjct: 323 HGQAQQEQCDTICNLSVISSSTGLGGLHLVLFRIEGEHKLPPTTLSPGDMVCVRTCNSRG 382
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
ATSC+QGF++NLGEDGC+I+VALESRHGDPTFS+LFGKSVRIDRIQGLAD LTYERN
Sbjct: 383 EGATSCMQGFLYNLGEDGCSITVALESRHGDPTFSRLFGKSVRIDRIQGLADALTYERNL 442
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL-DGIMGK--TFDD 237
EALMLLQ+NGL K N SI V TLFGD +DV +E+N L DW E L D + + FDD
Sbjct: 443 EALMLLQRNGLLKSNASIDVVATLFGDGKDVMKMEQNCLIDWGESSLPDPRLSERYAFDD 502
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ +A++LGLNKKRP+L+IQGPPGTGKT LL E+I RAV+QGE VLVTAP+NAAVDNMVE
Sbjct: 503 SQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVE 562
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KLS GLNIVRVGNPARISP+V SKSL EIV +L+ F E ERK++DLRKDLR C++DD
Sbjct: 563 KLSSTGLNIVRVGNPARISPSVTSKSLAEIVNGRLSQFRKELERKRTDLRKDLRDCIEDD 622
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
SLAAGIRQLLKQLG+ L+ KEKET+ EVLS AQVVL+TNTGAADPLIR++ FDLV
Sbjct: 623 SLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDE 682
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
GKRCILAGD CQLAP ILSRKALEGG+G S++ERA+ LH+G+L T
Sbjct: 683 AGQGIEPSCWIPILQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLTT 742
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
+LT Q+RM+D+IASWASKEMY G L SS +VASHLL D+P VK
Sbjct: 743 RLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVK 785
>gi|222422959|dbj|BAH19464.1| AT5G35970 [Arabidopsis thaliana]
Length = 626
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/375 (82%), Positives = 337/375 (89%), Gaps = 1/375 (0%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
MD E+VK IQ R+DEFT +MS+LL++ERD ELE TQEEL+ VPTPDE+SDSSKPIEFLV
Sbjct: 252 MDSEKVKAIQERIDEFTSQMSQLLQVERDTELEVTQEELDVVPTPDESSDSSKPIEFLVR 311
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
HG APQELCDTICNL+ VSTSTGLGGMHLVLF+V GNHRLPPTTLSPGDMVC+RVCDSRG
Sbjct: 312 HGDAPQELCDTICNLYAVSTSTGLGGMHLVLFKVGGNHRLPPTTLSPGDMVCIRVCDSRG 371
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A AT+C QGFVHNLGEDGC+I VALESRHGDPTFSKLFGKSVRIDRI GLAD LTYERNC
Sbjct: 372 AGATACTQGFVHNLGEDGCSIGVALESRHGDPTFSKLFGKSVRIDRIHGLADALTYERNC 431
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL-DGIMGKTFDDSQ 239
EALMLLQKNGL K+NPSI+ V TLFGD ED+TWLE+ND DWSE +L D + K FD SQ
Sbjct: 432 EALMLLQKNGLQKKNPSISVVATLFGDGEDITWLEQNDYVDWSEAELSDEPVSKLFDSSQ 491
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++AIALG+NKKRP++I+QGPPGTGKTG+LKE+I AVQQGERVLVTAPTNAAVDNMVEKL
Sbjct: 492 RRAIALGVNKKRPVMIVQGPPGTGKTGMLKEVITLAVQQGERVLVTAPTNAAVDNMVEKL 551
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
+GLNIVRVGNPARIS AVASKSLGEIV SKLASF AE ERKKSDLRKDLRQCL+DD L
Sbjct: 552 LHLGLNIVRVGNPARISSAVASKSLGEIVNSKLASFRAELERKKSDLRKDLRQCLRDDVL 611
Query: 360 AAGIRQLLKQLGKTL 374
AAGIRQLLKQLGKTL
Sbjct: 612 AAGIRQLLKQLGKTL 626
>gi|302771055|ref|XP_002968946.1| hypothetical protein SELMODRAFT_90782 [Selaginella moellendorffii]
gi|300163451|gb|EFJ30062.1| hypothetical protein SELMODRAFT_90782 [Selaginella moellendorffii]
Length = 827
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 348/696 (50%), Positives = 455/696 (65%), Gaps = 35/696 (5%)
Query: 4 ERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGR 63
E V IQS++D F R ELL +ER AEL TQ+ L+ +S +
Sbjct: 119 EVVAGIQSKVDAFVDRYLELLSVERQAELAATQQALDGSSKKKLSSGCGDEEDHDEEEKS 178
Query: 64 AP--------QELCDTICNLFVVSTSTGLGGMHLVLFRVEGN-HRLPPTTLSPGDMVCVR 114
+ E C +C+L VS+ GLGG +V FR + + +RLPPT+LSPGDMVCVR
Sbjct: 179 SSSSSSPSILHEECGALCDLVAVSSFKGLGGTEVVSFRSKNSQNRLPPTSLSPGDMVCVR 238
Query: 115 VCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTL 174
V + +G AT C++G V+ L EDG I VAL G KL G+S+RID+I LA+
Sbjct: 239 VSNRQGIPATECLRGSVYKLCEDGQFIEVALPG--GGRALMKLSGRSIRIDKIFDLANAT 296
Query: 175 TYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLE--ENDLADWSEVKLDGIMG 232
TYERNCEAL L+K + K NP+ A LFG E++ L ++ L D + + G
Sbjct: 297 TYERNCEALKQLKKVAVSKDNPAAAIAAVLFGQGEEIEKLARGKDQLEDTHSLLASTLSG 356
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+FD SQ++AI LGL+K RP+ +IQGPPGTGKT ++ EII +AV +G++VL TAPTNAAV
Sbjct: 357 ASFDKSQRRAIQLGLDKSRPVAVIQGPPGTGKTNVVTEIIIQAVARGDKVLATAPTNAAV 416
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN+V++LSD L +VRVGNP R+SP+V SKSL IV S+L F K+ LR+ +
Sbjct: 417 DNLVDRLSDTSLRVVRVGNPVRMSPSVVSKSLTHIVSSELVDFKRSIASDKAALRRASMR 476
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
C +D + A I + L++L K++KKKE+E VL++AQVVL T+ GA DPL+R+ FDL
Sbjct: 477 C-QDGKIKAEIDKNLRRLDKSVKKKEEEIPVGVLAAAQVVLCTSIGAGDPLLRKTGLFDL 535
Query: 413 V-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL-- 451
R +LAGD CQLAP + S +A++GG+ SL+ERA+T
Sbjct: 536 AVVDEAGQAMEPSCWIGILRSSRVVLAGDACQLAPTVFSAEAVDGGLATSLMERASTSLG 595
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
H V+ T L QYRMN+AIASWAS EMYGG + ++ +VA +L D+P VK TW T+ +L
Sbjct: 596 HSAVMNTMLQVQYRMNEAIASWASSEMYGGLVKTAPSVAKQVLSDSPQVKETWRTRAAML 655
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
LLDTR +GSL++GCEE +D GTGSFYN+GEA+IVV HV +LI +GV S+IAVQSPY+
Sbjct: 656 LLDTRKAFGSLAMGCEECMDYLGTGSFYNDGEADIVVEHVKALIHSGVPASSIAVQSPYL 715
Query: 572 AQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
AQV LR RLD+ V+ +IDSFQGREADAV+ISMVRSN LG VGFL D RR+NVA
Sbjct: 716 AQVHLLRARLDEESLGDIVQTESIDSFQGREADAVVISMVRSNELGVVGFLADKRRINVA 775
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
+TR+ KHVA+VCDSST+ N FL RLL+HIR G V
Sbjct: 776 VTRSRKHVAIVCDSSTVGSNPFLRRLLQHIRAHGIV 811
>gi|302816629|ref|XP_002989993.1| hypothetical protein SELMODRAFT_130836 [Selaginella moellendorffii]
gi|300142304|gb|EFJ09006.1| hypothetical protein SELMODRAFT_130836 [Selaginella moellendorffii]
Length = 826
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 346/696 (49%), Positives = 457/696 (65%), Gaps = 35/696 (5%)
Query: 4 ERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENS--------DSSKPI 55
E V IQS++D F R ELL +ER AEL TQ+ L+ +S + +
Sbjct: 119 EVVAGIQSKVDAFVDRYLELLSVERQAELAATQQALDGSSKKKLSSGCGDEEDHEEEEKS 178
Query: 56 EFLVSHGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGN-HRLPPTTLSPGDMVCVR 114
S E C +C+L VS+ GLGG +V FR + + +RLPPT+LSPGDMVCVR
Sbjct: 179 SSSSSSSSILHEECGALCDLVAVSSFKGLGGTEVVSFRSKNSQNRLPPTSLSPGDMVCVR 238
Query: 115 VCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTL 174
V + +G AT C++G V+ L EDG I VAL G KL G+S+RID+I LA+
Sbjct: 239 VSNRQGIPATECLRGSVYKLCEDGQFIEVALPG--GGRALMKLSGRSIRIDKIFDLANAT 296
Query: 175 TYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLE--ENDLADWSEVKLDGIMG 232
TYERNCEAL L+K + K NP+ A V LFG E++ L ++ L D + + G
Sbjct: 297 TYERNCEALKQLKKVAVSKDNPAAAIVAVLFGQGEEIEKLARGKDQLEDTHSLLASTLSG 356
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+FD+SQ++AI LGL+K RP+ +IQGPPGTGKT ++ EII +AV +G++VL TAPTNAAV
Sbjct: 357 ASFDESQRRAIQLGLDKSRPVAVIQGPPGTGKTNVVTEIIIQAVARGDKVLATAPTNAAV 416
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN+V++LSD L +VRVGNP R+SP+V SKSL IV S+L F K+ LR+ +
Sbjct: 417 DNLVDRLSDTSLRVVRVGNPVRMSPSVVSKSLTHIVSSELVDFKRSIASDKAALRRTSMR 476
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
+D + A + + L++L K+++KKE+E VL++AQVVL T+ GA DP +R+ FDL
Sbjct: 477 S-QDGKIKAEVDKNLRRLDKSMRKKEEEIPAAVLAAAQVVLCTSIGAGDPSLRKTGLFDL 535
Query: 413 V-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL-- 451
R +LAGD CQLAP + S +A++GG+ SL+ERA+T
Sbjct: 536 AVVDEAGQAMEPSCWIGILRSSRVVLAGDACQLAPTVFSAEAVDGGLATSLMERASTSLG 595
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
H V+ T L QYRMN+AIASWAS EMYGG + ++ VA +L D+P VK TW T+ +L
Sbjct: 596 HSAVMTTMLQVQYRMNEAIASWASSEMYGGLVKTAPLVAKQVLSDSPQVKETWRTRAAML 655
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
LLDTR +GSL++GCEE +D GTGSFYN+GEA+IVV HV +LI +GV S+IAVQSPY+
Sbjct: 656 LLDTRKAFGSLAMGCEECMDYLGTGSFYNDGEADIVVEHVKALIHSGVPASSIAVQSPYL 715
Query: 572 AQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
AQV LR RLD+ V+ +IDSFQGREADAV+ISMVRSN LG VGFL D RR+NVA
Sbjct: 716 AQVHLLRARLDEESLGNIVQTESIDSFQGREADAVVISMVRSNELGVVGFLADKRRINVA 775
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
+TR+ KHVA+VCDSST+ N+FL RLL+HIR +G V
Sbjct: 776 VTRSRKHVAIVCDSSTVGSNSFLRRLLQHIRAYGIV 811
>gi|115448159|ref|NP_001047859.1| Os02g0704300 [Oryza sativa Japonica Group]
gi|113537390|dbj|BAF09773.1| Os02g0704300 [Oryza sativa Japonica Group]
Length = 331
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/330 (70%), Positives = 267/330 (80%), Gaps = 21/330 (6%)
Query: 382 VKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGD 422
++E LS AQVVL+TNTGAADPLIRR FDLV GKRCILAGD
Sbjct: 2 IREALSEAQVVLSTNTGAADPLIRRTCCFDLVIIDEAGQAIEPSCWIPILQGKRCILAGD 61
Query: 423 QCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
CQLAPVILSRKAL+GG+G SLLERA++LH G+L T+LT Q+RMND+IASWASKEMY G
Sbjct: 62 HCQLAPVILSRKALDGGLGKSLLERASSLHNGLLTTRLTVQHRMNDSIASWASKEMYHGL 121
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG 542
L SS +VAS L D+P VK TWIT+CPLLLLDTR+PYG+L GC E +DL+GTGSFYN+G
Sbjct: 122 LKSSHSVASQTLADSPVVKATWITRCPLLLLDTRMPYGALDTGCGEQIDLSGTGSFYNDG 181
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGRE 602
EA+IV HV +L+ GVSP+AIAVQSPY+AQVQ LRERL++ P +GVEV+TIDSFQGRE
Sbjct: 182 EADIVTQHVLNLVHCGVSPTAIAVQSPYIAQVQLLRERLEEYPGLSGVEVSTIDSFQGRE 241
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
ADAV+ISMVRSN LGAVGFLGDSRRMNVAITRAC+HV VVCD+STICH+TFLARLLRHIR
Sbjct: 242 ADAVVISMVRSNPLGAVGFLGDSRRMNVAITRACRHVTVVCDTSTICHSTFLARLLRHIR 301
Query: 663 YFGRVKHAEPGSFGG-SGLGM-DPMLPSIS 690
+G+VKH PGS G SGLG P LPSIS
Sbjct: 302 RYGQVKHVVPGSLDGVSGLGFSQPTLPSIS 331
>gi|50252651|dbj|BAD28821.1| DNA helicase-like [Oryza sativa Japonica Group]
gi|50252969|dbj|BAD29221.1| DNA helicase-like [Oryza sativa Japonica Group]
Length = 257
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/257 (74%), Positives = 223/257 (86%), Gaps = 2/257 (0%)
Query: 436 LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV 495
++GG+ +SLLERA++LH +L TKLTTQYRM+D+IASWAS EMY G L SS +VASHLL
Sbjct: 1 MQGGLAMSLLERASSLHNELLTTKLTTQYRMHDSIASWASNEMYDGFLKSSPSVASHLLA 60
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI 555
D PF+K TWIT+C LLLDTR+PYGSL++ CEEHLD AGTGSFYN GEA++V HV +L+
Sbjct: 61 DYPFIKETWITRCAFLLLDTRMPYGSLNIDCEEHLDPAGTGSFYNNGEADVVSQHVLNLV 120
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
GVSP+AIAVQSPY+AQVQ LR+RL+D PEA+GVEV+TIDSFQGREADAV+ISMVRSNT
Sbjct: 121 QCGVSPTAIAVQSPYIAQVQLLRDRLEDYPEASGVEVSTIDSFQGREADAVVISMVRSNT 180
Query: 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSF 675
LGAVGFLGD+RRMNVAITRA +HVA+VCDSSTIC+N FLARLLRHIR G+V+H EPGSF
Sbjct: 181 LGAVGFLGDNRRMNVAITRARRHVALVCDSSTICNNAFLARLLRHIRQHGQVRHVEPGSF 240
Query: 676 GG-SGLGMD-PMLPSIS 690
GG SGLG P LPSIS
Sbjct: 241 GGDSGLGYTPPALPSIS 257
>gi|255086899|ref|XP_002509416.1| predicted protein [Micromonas sp. RCC299]
gi|226524694|gb|ACO70674.1| predicted protein [Micromonas sp. RCC299]
Length = 592
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 227/506 (44%), Positives = 288/506 (56%), Gaps = 66/506 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
FD +Q+ A+ + L K P++ IQGPPGTGKTG++ EII RAV G+RVL AP+NAAVDN
Sbjct: 82 FDPAQQLAVRVALTKTAPVVWIQGPPGTGKTGVVIEIIRRAVASGQRVLACAPSNAAVDN 141
Query: 295 MVEKLS--------DVGLNI--VRVGNPARISPAVASKSLGEIVKSKLASFV-AEFERKK 343
+VE+L+ + G NI VR+G P RIS A SL + + F A RKK
Sbjct: 142 LVERLAKLNTANEQNAGNNIDFVRIGAPERISSAALESSLDARIDRETGVFFDASRGRKK 201
Query: 344 S-------------DLRKDLRQCLKDDSLAAGI-------RQLLKQLGKTLKKKEKETVK 383
DL+K + L D+ A I R+ + L K+ KK +
Sbjct: 202 EIDLAKRQGWKKQEDLQKGKVKGLGDNISAKNIEAKLGDLRREQRTLAKSGKKVRANAER 261
Query: 384 EVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQC 424
E+L+ AQVVLAT GA I+RL FD+V KR +L GD C
Sbjct: 262 EILAEAQVVLATAVGAGAENIQRLPAFDIVILDEAAQATEPAAWIPLVRSKRAVLVGDPC 321
Query: 425 QLAPVILSRKALEGGIGVSLLERAAT--------LHEGVLATKLTTQYRMNDAIASWASK 476
QLAP++ S KA +GG+ L+ R A L GVL LTTQYR N I+ WAS+
Sbjct: 322 QLAPLVRSTKASDGGLATPLMARKAPALGAANAYLSSGVLGCVLTTQYRSNRLISDWASQ 381
Query: 477 EMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG 536
EMYGG L +S VAS LL P V T T PLLLLDTR G L GC E +++ +
Sbjct: 382 EMYGGRLAASERVASRLLSQMPGVASTPATNAPLLLLDTRTRAGMLLTGCSEVSEMSSSS 441
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL------PEAAGV 590
S NEGEA V+ HV L+ AGV+PS +AVQSPY AQV+ +R +L D+ P A V
Sbjct: 442 SLVNEGEAYAVMMHVAGLLGAGVAPSDVAVQSPYAAQVRLIRTKLADVAARGAAPGADLV 501
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
EVA++DSFQGREA+AV+IS VRSN +VGFL D RR NVA+TRA +HV +V DS T+
Sbjct: 502 EVASVDSFQGREAEAVVISTVRSNDRQSVGFLADVRRANVAVTRARRHVCIVGDSVTVGG 561
Query: 651 NTFLARLLRHIRYFGRVKHAEPGSFG 676
+ FL RL+ H+R G V A FG
Sbjct: 562 DPFLNRLMSHMRTNGLVATAN--EFG 585
>gi|18395518|ref|NP_565299.1| putative DNA-binding protein [Arabidopsis thaliana]
gi|15027927|gb|AAK76494.1| putative helicase [Arabidopsis thaliana]
gi|20197343|gb|AAM15033.1| putative helicase [Arabidopsis thaliana]
gi|20197741|gb|AAD17447.2| putative helicase [Arabidopsis thaliana]
gi|20259169|gb|AAM14300.1| putative helicase [Arabidopsis thaliana]
gi|330250587|gb|AEC05681.1| putative DNA-binding protein [Arabidopsis thaliana]
Length = 639
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 234/681 (34%), Positives = 357/681 (52%), Gaps = 86/681 (12%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L+ F M+ L+ +E++AE+ + S +S+ IE Q+ TI
Sbjct: 7 LEAFVSTMAPLIDMEKEAEISMSL-----------TSGASRNIE-------TAQKKGTTI 48
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL V TGL G L+ F+ LP D+V +++ S ++ QG V+
Sbjct: 49 LNLKCVDVQTGLMGKSLIEFQSNKGDVLPAHKFGNHDVVVLKLNKS-DLGSSPLAQGVVY 107
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
L + T+ D + S+R+++ LA+ +TY R + L+ L K L
Sbjct: 108 RLKDSSITVVF-------DEVPEEGLNTSLRLEK---LANEVTYRRMKDTLIQLSKGVL- 156
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
R P+ V LFG+++ + + D+ ++ K D SQK AI L+ K
Sbjct: 157 -RGPASDLVPVLFGERQ--PSVSKKDVKSFTP------FNKNLDQSQKDAITKALSSK-D 206
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ ++ GPPGTGKT + EI+ + V++G ++L A +N AVDN+VE+L + +VRVG+P
Sbjct: 207 VFLLHGPPGTGKTTTVVEIVLQEVKRGSKILACAASNIAVDNIVERLVPHKVKLVRVGHP 266
Query: 313 ARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLG 371
AR+ P V +L +++K + + ++ L L + KD + I++ L+ LG
Sbjct: 267 ARLLPQVLDSALDAQVLKGDNSGLANDIRKEMKALNGKLLKA-KDKNTRRLIQKELRTLG 325
Query: 372 KTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFDLV---------------- 413
K +K+++ V +V+ +A V+L T TGA L R+LD TFDLV
Sbjct: 326 KEERKRQQLAVSDVIKNADVILTTLTGA---LTRKLDNRTFDLVIIDEGAQALEVACWIA 382
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
G RCILAGD QL P I S +A G+G +L ER A L+ + + LT QYRM++ I
Sbjct: 383 LLKGSRCILAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYGDEIKSMLTVQYRMHELI 442
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+W+SKE+Y + + S+VASH+L D V + T+ LLL+DT GC+
Sbjct: 443 MNWSSKELYDNKITAHSSVASHMLFDLENVTKSSSTEATLLLVDT--------AGCDMEE 494
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR------ERLDDL 584
S YNEGEAE+ + H L+ +GV PS I + +PY AQV LR E+L D+
Sbjct: 495 KKDEEESTYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLKDM 554
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
E++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TR+ + +VCD
Sbjct: 555 ------EISTVDGFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCD 608
Query: 645 SSTICHNTFLARLLRHIRYFG 665
+ T+ + FL R++ + G
Sbjct: 609 TETVSSDAFLKRMIEYFEEHG 629
>gi|11191231|emb|CAC16347.1| putative helicase [Arabidopsis thaliana]
Length = 635
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 234/681 (34%), Positives = 357/681 (52%), Gaps = 86/681 (12%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L+ F M+ L+ +E++AE+ + S +S+ IE Q+ TI
Sbjct: 3 LEAFVSTMAPLIDMEKEAEISMSL-----------TSGASRNIE-------TAQKKGTTI 44
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL V TGL G L+ F+ LP D+V +++ S ++ QG V+
Sbjct: 45 LNLKCVDVQTGLMGKSLIEFQSNKGDALPAHKFGNHDVVVLKLNKS-DLGSSPLAQGVVY 103
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
L + T+ D + S+R+++ LA+ +TY R + L+ L K L
Sbjct: 104 RLKDSSITVVF-------DEVPEEGLNTSLRLEK---LANEVTYRRMKDTLIQLSKGVL- 152
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
R P+ V LFG+++ + + D+ ++ K D SQK AI L+ K
Sbjct: 153 -RGPASDLVPVLFGERQ--PSVSKKDVKSFTP------FNKNLDQSQKDAITKALSSK-D 202
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ ++ GPPGTGKT + EI+ + V++G ++L A +N AVDN+VE+L + +VRVG+P
Sbjct: 203 VFLLHGPPGTGKTTTVVEIVLQEVKRGSKILACAASNIAVDNIVERLVPHKVKLVRVGHP 262
Query: 313 ARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLG 371
AR+ P V +L +++K + + ++ L L + KD + I++ L+ LG
Sbjct: 263 ARLLPQVLDSALDAQVLKGDNSGLANDIRKEMKALNGKLLKA-KDKNTRRLIQKELRTLG 321
Query: 372 KTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFDLV---------------- 413
K +K+++ V +V+ +A V+L T TGA L R+LD TFDLV
Sbjct: 322 KEERKRQQLAVSDVIKNADVILTTLTGA---LTRKLDNRTFDLVIIDEGAQALEVACWIA 378
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
G RCILAGD QL P I S +A G+G +L ER A L+ + + LT QYRM++ I
Sbjct: 379 LLKGSRCILAGDHLQLPPTIQSAEAERKGLGRTLFERLADLYGDEIKSMLTVQYRMHELI 438
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+W+SKE+Y + + S+VASH+L D V + T+ LLL+DT GC+
Sbjct: 439 MNWSSKELYDNKITAHSSVASHMLFDLENVTKSSSTEATLLLVDT--------AGCDMEE 490
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR------ERLDDL 584
S YNEGEAE+ + H L+ +GV PS I + +PY AQV LR E+L D+
Sbjct: 491 KKDEEESTYNEGEAEVAMAHAKRLMESGVQPSDIGIITPYAAQVMLLRILRGKEEKLKDM 550
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
E++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TR+ + +VCD
Sbjct: 551 ------EISTVDGFQGREKEAIIISMVRSNSKKEVGFLKDQRRMNVAVTRSRRQCCIVCD 604
Query: 645 SSTICHNTFLARLLRHIRYFG 665
+ T+ + FL R++ + G
Sbjct: 605 TETVSSDAFLKRMIEYFEEHG 625
>gi|348505663|ref|XP_003440380.1| PREDICTED: DNA-binding protein SMUBP-2 [Oreochromis niloticus]
Length = 995
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 234/628 (37%), Positives = 341/628 (54%), Gaps = 65/628 (10%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE---GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L + S STGL G +V+ G LP + PGD+V + D+ G A S I
Sbjct: 44 LLKLQIGSQSTGLYGRTVVILEPRKHLGFSSLPSNSFGPGDIVGLY--DTTGCAAASQIS 101
Query: 129 -GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
G V +G+ +ISVA + +F S + + LA+ +TY+R AL L
Sbjct: 102 TGIVTRVGQ--ASISVAFDDLKDGHSFD-----SDALYNLLKLANDVTYKRMKRALNTL- 153
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
NG + P+ + LFGD + + + N + DDSQ++A++ L
Sbjct: 154 -NG-YNNGPASNLISVLFGDTKPTSQSQPNKVE---------FFNSNLDDSQREAVSFAL 202
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
++ R L +I GPPGTGKT + EII +AV+ G++VL AP+N AVDN+VE+L+ ++
Sbjct: 203 SQ-RELAVIHGPPGTGKTTTVVEIILQAVKHGQKVLCCAPSNVAVDNLVERLAQCKAKVL 261
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
R+G+PAR+ ++ SL I+ +S A+ +AE + D+ K K+ +++
Sbjct: 262 RLGHPARLLESIQKHSLDAILAQSDNANIIAEIRK---DIDKAFTGMKKEKGERGNLKRE 318
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PL-IRRLDTFDLV---------- 413
+ +L K LK +E + ++L SA VVL+TNTGA D PL + FD V
Sbjct: 319 IGELRKELKNRETAAIAQILKSADVVLSTNTGACDDGPLKFLPAEHFDWVVIDECAQALE 378
Query: 414 ---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
++CILAGD QL P I S+ A G+ +SL+ER ++ + LT QY
Sbjct: 379 SSCWIALLRARKCILAGDYKQLPPTIKSQMAASKGLSLSLMERLIQMYGDSVVRMLTVQY 438
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RMN AI WASKEMY G L + S+V HLL D V T PLLL+DT
Sbjct: 439 RMNSAIMQWASKEMYQGRLTAHSSVEGHLLKDLAGVACVEETSTPLLLIDT--------A 490
Query: 525 GCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD- 582
GC +++A S N GE +IV H+ +L AGV IAV +PY QV LR++L
Sbjct: 491 GCGLSEMEVADEQSKGNTGEVDIVDLHIKALTEAGVKAKDIAVIAPYNLQVDLLRQKLSA 550
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
PE +E+ ++D FQGRE +AV++S+VRSN G VGFL + RR+NVA+TRA +H+AVV
Sbjct: 551 KHPE---LEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTRARRHIAVV 607
Query: 643 CDSSTICHNTFLARLLRHIRYFGRVKHA 670
CD+ T+ ++ FL L+ H+ FG V+ A
Sbjct: 608 CDTQTVQNHGFLKSLIDHMTEFGEVRTA 635
>gi|405955090|gb|EKC22334.1| DNA-binding protein SMUBP-2 [Crassostrea gigas]
Length = 997
Score = 335 bits (859), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 259/703 (36%), Positives = 365/703 (51%), Gaps = 121/703 (17%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDT- 71
L++F + +LL ER+AE+E T+ +P P+EL
Sbjct: 3 LEKFVNQHIQLLDKEREAEIEETRHVNETLP---------------------PKELQRRG 41
Query: 72 IC--NLFVVSTSTGLGGMHLVLFRVEGN-HRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+C L + S TG G +V F G LP ++PGD+V + A+S Q
Sbjct: 42 VCLLKLHIRSRRTGFYGRTVVTFEPGGALQELPAHNITPGDIVSL--------TASSAHQ 93
Query: 129 G-------FVHNLGEDGCTISVALESRHG--DPTFSKLFGKSVRIDRIQGLADTLTYERN 179
G V + G+ ISVA + + D L+ ++ LA+ +TY+R
Sbjct: 94 GDEGFGSGIVTHAGKSA--ISVAFDDKEDLYDLQEEDLY-------KLTKLANDVTYKRL 144
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQ 239
AL L+K S V LFG E DL+ +K ++ D+SQ
Sbjct: 145 KNALNNLKKGDF---GGSSRLVDVLFG---------ETDLSSPYNLKDIHLVNSGLDESQ 192
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
+ A+ L + + I+ GPPGTGKT + EII +A++QG ++L AP+N AVDN+VE+L
Sbjct: 193 EDAVRFALAQPE-VAIVHGPPGTGKTTTVIEIIIQAIKQGNKILACAPSNIAVDNLVERL 251
Query: 300 SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL----- 354
+ +VR+G+PAR+ P + SL I+ S + + E D+RKDL + L
Sbjct: 252 AQHKQKVVRLGHPARVLPHIQKYSLDAILSSSEETRLVE------DVRKDLDKNLSAIRK 305
Query: 355 -KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPL--IRRLDT-- 409
+D IR+ +K L K L+++E+ KEVL A VVLAT +ADP IR LD
Sbjct: 306 TRDHGEKQKIREDVKYLRKELRQREEAASKEVLKRADVVLAT-LSSADPRGPIRYLDNEH 364
Query: 410 FDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
FDLV RC+LAGD QL P ILS++A G+ +L+ER
Sbjct: 365 FDLVVIDECSQAVEAACWIPLLRAPRCVLAGDHLQLPPTILSKEAASAGLETTLMERLLD 424
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L+ G + LTTQYRM+ I W+S ++Y G L + S+VA+HLL D V+ T T PL
Sbjct: 425 LYGGKVMRMLTTQYRMHQLIMQWSSDQLYEGKLTAHSSVATHLLRDIEKVEETEETSEPL 484
Query: 511 LLLDTRLPYGSLSLGCEEH-LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
LL+DT GC+ + LD+ S NEGEA+IV HV LI G++ IAV+
Sbjct: 485 LLIDT--------AGCQLYELDVPEEISKGNEGEADIVSSHVEKLIKLGLNQEEIAVEL- 535
Query: 570 YVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
LR RL +D P+ VE+ ++D FQGRE +AVIISMVRSN G VGFL + RR+
Sbjct: 536 -------LRLRLSNDYPK---VEIKSVDGFQGREKEAVIISMVRSNMKGEVGFLAEKRRI 585
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
NVAITRA +H+AVVCDS T+ H+ FL L+ ++ G VK A+
Sbjct: 586 NVAITRARRHLAVVCDSETVGHDAFLKSLVDYMSANGVVKTAQ 628
>gi|390356226|ref|XP_003728733.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2-like
[Strongylocentrotus purpuratus]
Length = 1100
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 244/711 (34%), Positives = 374/711 (52%), Gaps = 105/711 (14%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S + EF ++ +LL +ER AE+E T + L + + L G +C
Sbjct: 2 SSIGEFVRKHLDLLDVERQAEIEQTSDLLGKLS-----------VRELERRG-----VC- 44
Query: 71 TICNLFVVSTSTGLGGMHLVLF---RVEGNH-RLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L S +TGL G ++ F R +G +LP PGD+ V +S ++
Sbjct: 45 -LLKLRCASQATGLYGRTVLTFEPLRSQGQEGKLPAHNFGPGDIAGVSHSNSDTTSSSLL 103
Query: 127 IQGFVHNLGEDGCTISVALE------SRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
G V + G +I+VA E +R D T+ ++ LA+ +TY+R
Sbjct: 104 ASGIVSKV--TGSSIAVAFEENVEGIARGHDDTY-----------KLTKLANDVTYKRLK 150
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKE--DVTWLEENDLADWSEVKLDGIMGKTFDDS 238
+AL L++ ++ P++ + LFG+ + L N V+ ++S
Sbjct: 151 KALHELEE---YRTGPAVRLIEVLFGESDLGSPVSLPANKNPGSESVEF---FNANLNES 204
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
Q+ A+ L + R + +I GPPGTGKT + E+I +AV+Q ++L A +N AVDN++E+
Sbjct: 205 QRDAVTFALCQ-REVAVIHGPPGTGKTTTVVEVIQQAVKQNMKILACAASNVAVDNLLER 263
Query: 299 LS-DVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL--- 354
LS + ++VR+G+PAR+ P++ +L I+ S + + D+R+DL L
Sbjct: 264 LSANASCSMVRLGHPARLLPSIQRFALDAILASSDGASIVR------DIRRDLDTTLSQI 317
Query: 355 ---KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRLDT- 409
KD ++ +K L K LK +E++ ++++L +A VVLATNT A+ + +R L
Sbjct: 318 RKTKDKDEKHRLKDEMKYLRKDLKSREQKAIQDILMAADVVLATNTSASTNGPLRALQQG 377
Query: 410 -FDLV-------------------GKRCILAGDQCQLAPVILSRK---------ALEGGI 440
FDLV ++C+LAGD QL I+S++ A + G+
Sbjct: 378 HFDLVVIDECAQSLEAACWIPLLNARKCLLAGDHHQLPATIMSKQXKXKETCFTAAKEGL 437
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
S++ER L+ + LTTQYRMND I W+S ++Y G L S +VA+HLL D P +
Sbjct: 438 ATSMMERIIDLYGNRVVQMLTTQYRMNDEIMRWSSDQLYDGKLQSHQSVATHLLKDMPCI 497
Query: 501 KPTWITQCPLLLLDTRLPYGSLSLGCEE-HLDLAGTGSFYNEGEAEIVVHHVFSLICAGV 559
T PLLL+DT GC+ L+L S NEGEA+IV HHV +LI +G+
Sbjct: 498 MENENTTLPLLLIDT--------AGCDVLELELEDEVSKGNEGEADIVSHHVSNLISSGL 549
Query: 560 SPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAV 619
SP+ IAV +PY QV LR RL + G+E+ ++D FQGRE +AV+IS+VRSN G V
Sbjct: 550 SPAKIAVIAPYNLQVDLLRLRLSS--KYPGLEIKSVDGFQGREKEAVVISLVRSNDRGEV 607
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
GFL + RR+NVAITRA +H+AVVCDS T+ + FL L+ + G V+ A
Sbjct: 608 GFLKEDRRINVAITRARRHLAVVCDSQTVGKHPFLKSLVDYFNDHGEVRTA 658
>gi|410908195|ref|XP_003967576.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2-like
[Takifugu rubripes]
Length = 998
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 225/633 (35%), Positives = 340/633 (53%), Gaps = 73/633 (11%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE---GNHRLPPTTLSPGDMVCVRVCDSRGACATSCI- 127
+ L + S STGL G +++ G LP + PGD+V + D+ G A S +
Sbjct: 44 LLKLHIGSQSTGLYGRTVLILEPRKHLGFSSLPSNSFGPGDIVGL--YDTGGCSADSQVG 101
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
G V + + ++SVA + +F + + + LA+ +TY+R +AL L
Sbjct: 102 TGIVTRVSQ--ASVSVAFDDTKDGISFD-----TDALYNLLKLANDVTYKRMKKALNELN 154
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
+ P+ + LFG+ + + + N+ K DDSQ++A+ L
Sbjct: 155 S---YSNGPAGNLINVLFGETKPSCFSQSNETE---------FFNKNLDDSQREAVTFAL 202
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+ R L +I GPPGTGKT + EII +AV+QG++VL AP+N AVDN+VE+L+ + ++
Sbjct: 203 TQ-RDLAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCAPSNVAVDNLVERLAQCKIKVL 261
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQC------LKDDSLA 360
R+G+PAR+ ++ SL I+ +S A + SD+RKD+ + + +
Sbjct: 262 RLGHPARLLESIQKHSLDAIIAQSSNADII-------SDIRKDIDKAFVGLKKMHNKGER 314
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PL-IRRLDTFDLV---- 413
A ++ + +L K LK +E + ++L SA VVL+TNTGA D PL + FD V
Sbjct: 315 ASFKREITELRKELKSRETTAITQILKSADVVLSTNTGACDDGPLKFLPAEHFDWVVIDE 374
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
++C+LAGD QL P I S+KA G+ VSL+ER ++ +
Sbjct: 375 CAQALESSCWIALLRARKCVLAGDYKQLPPTIKSQKAAVKGLSVSLMERLIQMYGDTVVR 434
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRMN AI WAS +MY G L + S+V SHLL D P V T +LL+DT
Sbjct: 435 MLTVQYRMNGAIMEWASDQMYQGKLTAHSSVESHLLKDLPGVACVEETSTSMLLIDT--- 491
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC +++A S NEGE +IV H+ +L AG+ IAV +PY QV L
Sbjct: 492 -----AGCGLNEMEVADEQSKGNEGEVDIVALHIKALTEAGLKAKDIAVIAPYNLQVDLL 546
Query: 578 RERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
R+RL +E+ ++D FQGRE +AV++S+VRSN G VGFL + RR+NVA+TRA +
Sbjct: 547 RQRLS--VRHPALEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTRARR 604
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
H+A+VCD+ T+ ++ FL L+ H+ G V+ A
Sbjct: 605 HIAIVCDTRTVQNHAFLKSLIDHVTRRGEVRTA 637
>gi|308809071|ref|XP_003081845.1| DNA-binding protein, putative (ISS) [Ostreococcus tauri]
gi|116060312|emb|CAL55648.1| DNA-binding protein, putative (ISS) [Ostreococcus tauri]
Length = 781
Score = 331 bits (848), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 260/760 (34%), Positives = 374/760 (49%), Gaps = 125/760 (16%)
Query: 5 RVKTIQSRLDEFTQRMSELLRIERDAEL--EFTQEELNAVPTP-DENSDSSKPIEFLVSH 61
R +++R+ ELL IER EL + +E N + DE S + + +
Sbjct: 27 RNAALRARVARHVDVGQELLDIERACELASSSSMDEFNGEASDFDEESLAEREMR----- 81
Query: 62 GRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCV-------- 113
L +V + G G L++ R +P L+ GD V +
Sbjct: 82 ----------ASGLRLVGATRGGDGRALLVLRATDGKDIPVNALTVGDRVTISAVGFVSG 131
Query: 114 ----------RVCDSRGACATSCIQGFVHNLGED-----GCTISVALESRHGDPTF-SKL 157
R+ D A AT G LG+D G S+ LE + + L
Sbjct: 132 SYDADEATQERLGDIAPAQATVRFMG--DALGKDAIGRYGDAGSITLEYEGDERALATSL 189
Query: 158 FGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN-PSIAAVV-TLFGDKEDVTW-- 213
G V + R D TYER AL +L KR+ P+ A +V T+F + W
Sbjct: 190 SGLEVCLSRA---PDETTYERQRRALNILASIPAVKRSKPACARIVRTIFHENRPTLWRD 246
Query: 214 -----------LEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGT 262
+E S V+ + G TFD+SQ A+ KK P++ +QGPPGT
Sbjct: 247 ARGFDGGDGVHVEAVAAESLSRVERRSVTGVTFDNSQILALRAASTKKYPVVCVQGPPGT 306
Query: 263 GKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV-GLNIVRVGNPARISPAVAS 321
GKT ++ E+IA+A +GERVL AP+N AVDN+VE+L + + VR G P RIS A S
Sbjct: 307 GKTAVVIEMIAQACARGERVLACAPSNLAVDNLVERLDGIDAVRAVRFGAPERISAAALS 366
Query: 322 KSLGEIVKSKLASFVAEFERKKSD-------LRKDLRQCLKDDSLAAGIRQLLKQLGKTL 374
S+ V ++ F++++ D LR+ + + K ++ + +++ L+ +
Sbjct: 367 CSIDAKVAEATEAY---FQKQRVDSSETSATLRELMERYQKATNVPSAVKEKLQGEIEAT 423
Query: 375 KKKEKETV-----------KEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------- 413
K+K K V +++ A VVL TN GA ++ L FDLV
Sbjct: 424 KRKLKSIVGGGTKHRKAAQTKIVREANVVLTTNAGAGLDALQTLPPFDLVVIDEAAQASE 483
Query: 414 ---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLER---------------AA 449
GKR IL GD CQLAPVILSR+A+E G+ SL+ R +A
Sbjct: 484 PLSWIPLVRGKRAILIGDPCQLAPVILSREAIEAGLARSLMSRLMPSAETLPLRDDESSA 543
Query: 450 TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCP 509
+ +G+L L+TQYR ++AI+SW+SKE Y G L ++ +V LL D P V+ T +T+ P
Sbjct: 544 RVSDGILTLTLSTQYRSHEAISSWSSKEAYAGRLRAADSVRGALLRDLPGVQDTVLTRTP 603
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
+L++ TR P G + E+ + GS+ NEGEA+ + HV L+ AGV I V SP
Sbjct: 604 MLMITTRSPQGRIP---SEYSERRVGGSYINEGEAKTAMAHVKMLLKAGVRAKDIVVISP 660
Query: 570 YVAQVQHLRE----RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Y AQV+ LR L+D + V+V+++DSFQGREA+ VIIS VRSN G VGFL DS
Sbjct: 661 YAAQVRLLRSMIAVTLEDFADDRVVDVSSVDSFQGREAECVIISTVRSNGAGRVGFLSDS 720
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RRMNVA+TR + VA++ D TI + FL RL+ HI G
Sbjct: 721 RRMNVAVTRGKRQVAIIGDDQTIKSDDFLRRLVHHIESAG 760
>gi|431910166|gb|ELK13239.1| DNA-binding protein SMUBP-2 [Pteropus alecto]
Length = 984
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 255/695 (36%), Positives = 369/695 (53%), Gaps = 104/695 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + V ++ L S G +C +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQETVS-----------LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV F R LP + + GD+V + D G AT +
Sbjct: 48 LKLQVSSQRTGLYGRLLVTFEPRRCVSAGALPSNSFASGDIVGL--YDEGGQLATGVLTR 105
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
+++VA + H D S KS R+ + LA+ +TY+R AL+ L+K
Sbjct: 106 VTQK------SVTVAFDESH-DFQLSLDQEKSYRLLK---LANDVTYKRLKRALITLKK- 154
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + LFG + + SE+ ++ + D SQK+A++ L++
Sbjct: 155 --YHSGPASSLIEVLFGGRAP---------SPASEIPPPVLINASLDASQKEAVSFALSQ 203
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN++E+L+ GL ++R+
Sbjct: 204 KE-LAIIHGPPGTGKTTTVVEIIVQAVKQGCKVLCCAPSNTAVDNLLERLARCGLRVLRL 262
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ +V L E++ + A +A D+R+D+ Q L +D +
Sbjct: 263 GHPARLLGSVQQHCLDEVLARGDSAPIIA-------DIRRDIYQALVKNKKTQDKRERSD 315
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRLDT-FDLV------ 413
+R +K L K L+++E+ + + L++A VLATNTGA+D PL D+ FD+V
Sbjct: 316 LRNEVKLLRKELREREEAAMLQSLTAADAVLATNTGASDDGPLKLLPDSYFDMVVIDECS 375
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P +S KA G+ +SL+ER A + L
Sbjct: 376 QALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEAYGAGTVRTL 435
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AI WAS+ +Y G L + +VA HLL D P V T T PLLL+DT
Sbjct: 436 TVQYRMHQAIMQWASEALYHGQLTAHPSVAGHLLRDLPGVAATEETGIPLLLVDT----- 490
Query: 521 SLSLGC---EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC E+ D G S N GE +V HV +L+ AGV S IAV SPY QV L
Sbjct: 491 ---AGCGLLEQEGD--GDQSKGNPGEVRLVGLHVQALVDAGVRASDIAVISPYNLQVDLL 545
Query: 578 RERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L PE +E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA
Sbjct: 546 RQSLSHKHPE---LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTRAR 602
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
+HVA+VCDS T+ ++ FL L + YF +HAE
Sbjct: 603 RHVALVCDSRTVSNHAFLQTL---VAYF--TEHAE 632
>gi|440894224|gb|ELR46730.1| DNA-binding protein SMUBP-2 [Bos grunniens mutus]
Length = 981
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 256/691 (37%), Positives = 360/691 (52%), Gaps = 93/691 (13%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + ELL +ERDAE+E + V ++ L S G +C +
Sbjct: 6 VESFVTKQLELLELERDAEVEERRSWQENVS-----------LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G L+ R LP + + GD+V + D G AT +
Sbjct: 48 LKLQVSSQRTGLYGRLLITLEPRRCVSAAVLPSNSFTSGDIVGL--YDESGQLATGILTR 105
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
++VA + H S+L R+ LA+ +TY+R +AL+ L+K
Sbjct: 106 ITQK------AVTVAFDESHD----SQLSLDQEHSYRLLKLANDVTYKRLKKALISLKK- 154
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
H P+ + + LFG +D + SE D SQ++A+ L++
Sbjct: 155 --HHAGPASSLIEVLFG---------ASDPSPPSETPPLTFCNPALDASQQEAVLFALSQ 203
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV++G +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 204 KE-LAIIHGPPGTGKTTTVVEIILQAVKRGSKVLCCAPSNVAVDNLVERLAQWKQRILRL 262
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL ++ +S A VA D+R+D+ Q +D +
Sbjct: 263 GHPARLLDSIQQHSLDAVLARSDSARIVA-------DIRRDIDQAWAKNRKTQDKREKSN 315
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA--DPLIRRLDT-FDLV------ 413
R +K L K LK +E+ + E L++A VVLATNTGA+ PL D+ FD+V
Sbjct: 316 FRDEIKLLRKELKDREEAAMLESLAAANVVLATNTGASADGPLKLLPDSHFDMVVIDECA 375
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P I+S KA G+ +SL+ER A H L
Sbjct: 376 QALEASCWIPLLKARKCILAGDHKQLPPTIVSHKAALAGLSLSLMERLAERHGAGALRML 435
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AIA WAS+ +Y G L + +VA HLL D P V T T PLLL+DT G
Sbjct: 436 TVQYRMHQAIARWASEALYHGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT---AG 492
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
L EE D G N GE +V HV +L+ AGV + IAV +PY QV LR+
Sbjct: 493 CGLLELEED-DEQSKG---NPGEVRLVSLHVQALVDAGVRAADIAVITPYNLQVDLLRQS 548
Query: 581 L-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
L LPE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA +HV
Sbjct: 549 LAHRLPE---LEIRSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHV 605
Query: 640 AVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
AVVCDS T+ ++ FL L+ ++ G V+ A
Sbjct: 606 AVVCDSRTVSNHAFLKTLVGYLTEHGEVRTA 636
>gi|358419774|ref|XP_003584325.1| PREDICTED: DNA-binding protein SMUBP-2 [Bos taurus]
gi|359081357|ref|XP_003588118.1| PREDICTED: DNA-binding protein SMUBP-2 [Bos taurus]
Length = 981
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 256/691 (37%), Positives = 361/691 (52%), Gaps = 93/691 (13%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + ELL +ERDAE+E + V ++ L S G +C +
Sbjct: 6 VESFVTKQLELLELERDAEVEERRSWQENVS-----------LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G L+ R LP + + GD+V + D G AT +
Sbjct: 48 LKLQVSSQRTGLYGRLLITLEPRRCVSAAVLPSNSFTSGDIVGL--YDESGQLATGILTR 105
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
++VA + H S+L R+ LA+ +TY+R +AL+ L+K
Sbjct: 106 ITQK------AVTVAFDESHD----SQLSLDQEHSYRLLKLANDVTYKRLKKALISLKK- 154
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
H P+ + + LFG +D + SE+ D SQ++A+ L++
Sbjct: 155 --HHAGPASSLIEVLFG---------ASDPSPPSEMPPLTFCNPALDASQQEAVLFALSQ 203
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV++G +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 204 KE-LAIIHGPPGTGKTTTVVEIILQAVKRGSKVLCCAPSNVAVDNLVERLAQWKQRILRL 262
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL ++ +S A VA D+R+D+ Q +D +
Sbjct: 263 GHPARLLDSIQQHSLDAVLARSDSARIVA-------DIRRDIDQAWAKNRKTQDKREKSN 315
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA--DPLIRRLDT-FDLV------ 413
R +K L K LK +E+ + E L++A VVLATNTGA+ PL D+ FD+V
Sbjct: 316 FRDEIKLLRKELKDREEAAMLESLAAASVVLATNTGASADGPLKLLPDSHFDMVVIDECA 375
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P I+S KA G+ +SL+ER A H L
Sbjct: 376 QALEASCWIPLLKARKCILAGDHKQLPPTIVSHKAALAGLSLSLMERLAERHGAGALRML 435
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AIA WAS+ +Y G L + +VA HLL D P V T T PLLL+DT G
Sbjct: 436 TVQYRMHQAIARWASEALYHGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT---AG 492
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
L EE D G N GE +V HV +L+ AGV + IAV +PY QV LR+
Sbjct: 493 CGLLELEED-DEQSKG---NPGEVRLVGLHVQALVDAGVRAADIAVITPYNLQVDLLRQS 548
Query: 581 L-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
L LPE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA +HV
Sbjct: 549 LAHRLPE---LEIRSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHV 605
Query: 640 AVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
AVVCDS T+ ++ FL L+ ++ G V+ A
Sbjct: 606 AVVCDSRTVSNHAFLKTLVDYLTEHGEVRTA 636
>gi|432861602|ref|XP_004069646.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2-like
[Oryzias latipes]
Length = 987
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 235/633 (37%), Positives = 343/633 (54%), Gaps = 75/633 (11%)
Query: 72 IC--NLFVVSTSTGLGGMHLVLFRVE---GNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
IC L + S TGL G +++ G LP PGD+V + D+ G ATS
Sbjct: 42 ICLLKLQIGSQFTGLYGRTVLVLEPRKHLGFSSLPSNCFGPGDIVGLY--DAAGCSATSQ 99
Query: 127 I-QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALML 185
I G V + + ++SVA++ D + + + LA+ +TY+R AL +
Sbjct: 100 ICTGIVTRVSQ--ASVSVAIDILKDDAVLD-----TNSLYNLLKLANDVTYKRMKRALNV 152
Query: 186 LQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIAL 245
L NG + P+ + LFG+ + S + DDSQ++A+
Sbjct: 153 L--NG-YSNGPAGNIINVLFGNAQPS-----------SHSQPIQFFNSNLDDSQREAVMF 198
Query: 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN 305
L++ R L +I GPPGTGKT + EII +AV+QG++VL AP+N AVDN+VE+L+
Sbjct: 199 ALSQ-RELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCAPSNVAVDNLVERLAQCKAK 257
Query: 306 IVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL----KDDSLA 360
++R+G+PAR+ ++ SL I+ +S A+ +A D+RKD+ + L K+
Sbjct: 258 VLRLGHPARLLESIQKHSLDAILAQSDNANIIA-------DIRKDIDKVLMGMKKEKGER 310
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PL-IRRLDTFDLV---- 413
++ + +L K LK +E + ++L A VVL+TNTGA D PL + + FD V
Sbjct: 311 GNYKREIGELKKELKSREATAITQILKGADVVLSTNTGACDDGPLKLLPAEHFDWVVIDE 370
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
++CILAGD QL P I S+ A G+ +SL+ER ++ V+
Sbjct: 371 CAQALESSCWIALLKARKCILAGDYKQLPPTIKSQAAASKGLSLSLMERVIQIYGDVVVR 430
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRMN AI WASKEMY G L + +V SHLL D V T PLLL+DT
Sbjct: 431 MLTVQYRMNSAIMEWASKEMYQGKLTAHCSVESHLLKDLTGVASVAETSTPLLLIDT--- 487
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
GS G E +++ S N+GE +IV H+ +L AGV IAV +PY QV LR
Sbjct: 488 AGS---GLTE-MEVTDEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPYNLQVDLLR 543
Query: 579 ERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
+RL PE +E+ ++D FQGRE +AV++S+VRSN G VGFL + RR+NVA+TRA +
Sbjct: 544 QRLSARHPE---LEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLSEDRRINVAVTRARR 600
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
H+AVVCD+ T+ ++ FL L+ H+ G V+ A
Sbjct: 601 HIAVVCDTQTVQNHAFLKSLVDHMTEMGEVRTA 633
>gi|348565147|ref|XP_003468365.1| PREDICTED: DNA-binding protein SMUBP-2-like [Cavia porcellus]
Length = 988
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 252/695 (36%), Positives = 365/695 (52%), Gaps = 98/695 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VETFVAKHLYLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRG-ACATS 125
+ L V S TGL G LV F R LP + + GD+V + + G AT
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRCGPVAVLPSNSFTSGDIVGLYDTANEGRQLATG 104
Query: 126 CIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALML 185
+ ++SVA + H F + R+ LA+ +TY+R +AL+
Sbjct: 105 ILTRITQK------SVSVAFDESH---DFQLTLDRE-NFYRLLKLANDVTYKRLKKALVT 154
Query: 186 LQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIAL 245
L+K + P+ + + LFG +D + E+ D SQK+A++
Sbjct: 155 LKK---YHSGPASSLIEVLFGG---------SDPSPAQEIPPLKFYNTALDASQKEAVSF 202
Query: 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN 305
L++K L II GPPGTGKT + E+I +AV+QG +VL AP+N AVDN+VE+L+ L
Sbjct: 203 ALSQKE-LAIIHGPPGTGKTTTVVEVILQAVKQGLKVLCCAPSNVAVDNLVERLALRKLR 261
Query: 306 IVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDS 358
I+R+G+PAR+ + SL ++ +S A VA D+RKD+ Q ++
Sbjct: 262 ILRLGHPARLLEPIQQHSLDAVLARSDSAQIVA-------DIRKDIDQIFVKNKKTQEKK 314
Query: 359 LAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV-- 413
+ R +KQL K LK++E+ + E L++A VVLATNTGA+ D ++ L FD+V
Sbjct: 315 DKSNFRSEIKQLRKELKEREEAAMVESLTAASVVLATNTGASPDGPLKLLPESYFDVVVI 374
Query: 414 -----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
++CILAGD QL P +S +A + G+ +SL+ER A H +
Sbjct: 375 DECGQALEASCWIPLLKARKCILAGDHKQLPPTTVSHQAAQEGLSLSLMERLAEEHGDKV 434
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR 516
LT QYRM+ AI WAS+ MYGG L + S+VA LL D P V T T PLLL+DT
Sbjct: 435 VRTLTVQYRMHQAIMHWASEAMYGGQLTAHSSVAGQLLRDLPGVTATEETGIPLLLVDT- 493
Query: 517 LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
S L E D G N GE +V H+ +L+ AGV S IAV +PY QV
Sbjct: 494 ---ASCGLFELEEEDDQSKG---NPGEVRLVSLHIQALVDAGVQASDIAVITPYNLQVDL 547
Query: 577 LRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+ L+ PE +E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 LRQSLEHKHPE---LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTRA 604
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVA+VCDS T+ ++ FL L+ ++ G V+ A
Sbjct: 605 RRHVALVCDSRTVNNHPFLKTLVDYVTQHGEVRTA 639
>gi|326919828|ref|XP_003206179.1| PREDICTED: DNA-binding protein SMUBP-2-like [Meleagris gallopavo]
Length = 980
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 237/633 (37%), Positives = 334/633 (52%), Gaps = 74/633 (11%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L + TGL G LV F + + + LP + PGD+V + +G ++
Sbjct: 43 LLKLQAANQRTGLYGRLLVTFQPRKYDSDAELPYNSFGPGDIVGLYDSVGQGDLLST--- 99
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V + TI+ ESR G S S R+ + LA+ +TY R +AL L++
Sbjct: 100 GIVTRVTSKAVTIAFE-ESRDG--MLSVGHESSYRLLK---LANDITYNRIKKALNALKQ 153
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
+ P+ + LF D + SE K + + D SQ++A++ L
Sbjct: 154 ---YHSGPASDLIDVLFFSL---------DPSPSSETKPLKLYNDSLDASQREAVSFSLA 201
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+K + I+ GPPGTGKT + EII +AVQQG +VL AP+N AVDN+VE+L+ I+R
Sbjct: 202 QKE-VAIVHGPPGTGKTTTIVEIILQAVQQGLKVLCCAPSNVAVDNLVERLAGYKARILR 260
Query: 309 VGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAA 361
+G+PAR+ + SL ++ +S A VA D+RKD+ Q +D
Sbjct: 261 LGHPARLLEPIQQHSLDAVLARSDSAQIVA-------DVRKDIDQAFAKSKKAQDKGERG 313
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV----- 413
+K L K LK++E+ + L+ A +VLATNTGA+ D ++ L + FDLV
Sbjct: 314 HFLSEIKALRKELKEREETAMTAALTHASIVLATNTGASSDGPLKLLPENYFDLVVIDEC 373
Query: 414 --------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459
+CILAGD QL P I+S KA G+ +SL+ER + +
Sbjct: 374 AQALEASCWIPLLKAPKCILAGDHKQLPPTIISHKAAAKGLSLSLMERVIERYGEKVVKM 433
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPY 519
LT QYRM++AI WAS EMYGG L + +VA HLL D P V T T PLLL+DT
Sbjct: 434 LTVQYRMHEAIMQWASSEMYGGRLTAHPSVAQHLLKDLPGVTCTEETTIPLLLIDT---- 489
Query: 520 GSLSLGCEE-HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
GC L++ S N GE ++ H+ +L+ AGV IAV +PY QV LR
Sbjct: 490 ----AGCGLLELEVEDEQSKGNPGEVQLAGLHIQALVDAGVKARDIAVVAPYNLQVDMLR 545
Query: 579 ERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
E L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA +
Sbjct: 546 EHLCHRYPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARR 602
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
HVA++CDS T+ FL RLL H R G+V+ A
Sbjct: 603 HVAIICDSHTVGSQAFLGRLLEHFRQHGQVRTA 635
>gi|62089469|gb|AAH00290.1| IGHMBP2 protein, partial [Homo sapiens]
Length = 868
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 256/698 (36%), Positives = 362/698 (51%), Gaps = 104/698 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQ-----KSVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A++
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVSFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV IAV SPY Q
Sbjct: 494 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 544
Query: 574 VQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 545 VDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 601
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 602 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|118600271|gb|AAH25299.1| IGHMBP2 protein [Homo sapiens]
Length = 868
Score = 325 bits (832), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 256/698 (36%), Positives = 361/698 (51%), Gaps = 104/698 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQ-----KSVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A+
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVLFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV IAV SPY Q
Sbjct: 494 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 544
Query: 574 VQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 545 VDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 601
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 602 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|85397213|gb|AAI05091.1| Immunoglobulin mu binding protein 2 [Homo sapiens]
gi|85397939|gb|AAI05089.1| Immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 993
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 256/698 (36%), Positives = 362/698 (51%), Gaps = 104/698 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A++
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVSFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV IAV SPY Q
Sbjct: 494 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 544
Query: 574 VQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 545 VDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 601
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 602 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|380791299|gb|AFE67525.1| DNA-binding protein SMUBP-2, partial [Macaca mulatta]
Length = 784
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 255/695 (36%), Positives = 361/695 (51%), Gaps = 98/695 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + + EN ++ L S G +C +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERR-------SWQENIS----LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV F R LP + + GD+V + + G+ + I
Sbjct: 48 LKLQVSSQRTGLYGRLLVTFEPRRCGSVAALPSNSFTSGDIVGLYDAANEGSQLATGILT 107
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V +++VA + H D S S R+ + LA+ +TY R +AL+ L+K
Sbjct: 108 RVTQ-----KSVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIALKK- 157
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + LFG + + SE+ + D SQK+A++ L++
Sbjct: 158 --YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTSLDASQKEAVSFALSQ 206
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 207 KE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 265
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL +V +S A VA D+RKD+ Q +D +
Sbjct: 266 GHPARLLESIQQHSLDAVVARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKREKSN 318
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV------ 413
R +K L K LK +E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 319 FRNEVKLLRKELKGREEAAILESLTSANVVLATNTGASADGPLKLLPESHFDVVVIDECA 378
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P ++S KA G+ +SL+ER A + L
Sbjct: 379 QALEASCWIPLLKARKCILAGDHKQLPPTVVSHKAALAGLSLSLMERLAEEYGARAVRTL 438
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AI WAS MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 439 TVQYRMHQAIMRWASDTMYHGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT----- 493
Query: 521 SLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC E D G N GE +V H+ +L+ AGV +AV SPY QV
Sbjct: 494 ---AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDVAVVSPYNLQVDL 547
Query: 577 LRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 LRQSLAHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA 604
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|387542852|gb|AFJ72053.1| DNA-binding protein SMUBP-2 [Macaca mulatta]
Length = 991
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 254/695 (36%), Positives = 361/695 (51%), Gaps = 98/695 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRCGSVAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ + D SQK+A++
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTSLDASQKEAVSFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL +V +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVVARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK +E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEVKLLRKELKGREEAAILESLTSANVVLATNTGASADGPLKLLPESHFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P ++S KA G+ +SL+ER A +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTVVSHKAALAGLSLSLMERLAEEYGARAV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYHGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC L+ S N GE +V H+ +L+ AGV +AV SPY QV
Sbjct: 494 ------AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDVAVVSPYNLQVDL 547
Query: 577 LRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 LRQSLAHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA 604
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|119595135|gb|EAW74729.1| immunoglobulin mu binding protein 2 [Homo sapiens]
Length = 993
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 256/698 (36%), Positives = 362/698 (51%), Gaps = 104/698 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A++
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVSFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV IAV SPY Q
Sbjct: 494 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 544
Query: 574 VQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 545 VDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 601
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 602 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|383418089|gb|AFH32258.1| DNA-binding protein SMUBP-2 [Macaca mulatta]
Length = 991
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 255/698 (36%), Positives = 361/698 (51%), Gaps = 104/698 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRCGSVAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ + D SQK+A++
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTSLDASQKEAVSFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL +V +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVVARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK +E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEVKLLRKELKGREEAAILESLTSANVVLATNTGASADGPLKLLPESHFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P ++S KA G+ +SL+ER A +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTVVSHKAALAGLSLSLMERLAEEYGARAV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYHGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV +AV SPY Q
Sbjct: 494 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDVAVVSPYNLQ 544
Query: 574 VQHLRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 545 VDLLRQSLAHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 601
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 602 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|189069122|dbj|BAG35460.1| unnamed protein product [Homo sapiens]
Length = 993
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 256/698 (36%), Positives = 362/698 (51%), Gaps = 104/698 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A++
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVSFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV IAV SPY Q
Sbjct: 494 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 544
Query: 574 VQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 545 VDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 601
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 602 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|301787841|ref|XP_002929345.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2-like
[Ailuropoda melanoleuca]
Length = 995
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 254/691 (36%), Positives = 361/691 (52%), Gaps = 93/691 (13%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + + +P E L S G +C +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENI-SPKE----------LQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L S TGL G LV F R LP + + GD+V + D AT +
Sbjct: 48 LKLQASSQRTGLYGRLLVTFEPRRCTSAPVLPSNSFTSGDIVGL--YDEGSQLATGILTR 105
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
+++VA + H D S +S R+ + LA+ +TY+R +AL+ L+K
Sbjct: 106 ITQR------SVTVAFDESH-DFQLSLDREQSYRLLK---LANDVTYKRLKKALVTLKK- 154
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + LFG + SE++ + D SQK+A++ L++
Sbjct: 155 --YHSGPASSLIEVLFGGSAP---------SPASEIQPPLFCNASLDASQKEAVSFALSQ 203
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 204 KE-LAIIHGPPGTGKTTTVVEIILQAVRQGLKVLCCAPSNIAVDNLVERLARCKQRILRL 262
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D +
Sbjct: 263 GHPARLLESIQQHSLDAVLARSDNAQIVA-------DIRKDIDQAFAKNRQTQDKREKSS 315
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRLDT-FDLV------ 413
+ +K L K LK++E+ + E L+SA VVLATNTGA+ PL D+ FD+V
Sbjct: 316 VWSEIKLLRKELKEREEAAMLESLTSAAVVLATNTGASSDGPLKLLPDSHFDVVVIDECA 375
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P +S KA G+ +SL+ER A H + L
Sbjct: 376 QALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEHGARVVRTL 435
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AI WAS +Y G L + +VA HLL D P V T T PLLL+DT G
Sbjct: 436 TVQYRMHRAIMQWASDALYHGQLTAHPSVAGHLLRDLPGVAATEETGIPLLLVDT---AG 492
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
EE D S N GE +V H+ +L+ AGV S IAV +PY QV LR+
Sbjct: 493 CGLFELEEEDD----QSKGNPGEVRLVSLHIQALVDAGVQASDIAVITPYNLQVDLLRQS 548
Query: 581 L-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
L PE +E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA +HV
Sbjct: 549 LAHRHPE---LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTRARRHV 605
Query: 640 AVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
AVVCDS T+ ++ FL L+ H G V+ A
Sbjct: 606 AVVCDSRTVNNHAFLKTLVDHFTEHGEVRTA 636
>gi|449437623|ref|XP_004136591.1| PREDICTED: DNA-binding protein SMUBP-2-like [Cucumis sativus]
gi|449501878|ref|XP_004161482.1| PREDICTED: DNA-binding protein SMUBP-2-like [Cucumis sativus]
Length = 647
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 231/675 (34%), Positives = 359/675 (53%), Gaps = 80/675 (11%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L++F + LL +E+DAE+ + +S +++ +E Q+ TI
Sbjct: 15 LEQFVSITAPLLDMEKDAEIAASI-----------SSGATRNLE-------TAQKKGSTI 56
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI-QGFV 131
NL + S+GL G L+ F+ LPP S D+V ++ +R + + QG V
Sbjct: 57 LNLKCIDASSGLMGKTLLEFQSNKGDVLPPHKFSTHDVVVLK--PNRADLGSPSLGQGVV 114
Query: 132 HNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGL 191
+ L + +I+VA + + S L R++ +A+ +TY R +AL+ L K G+
Sbjct: 115 YRLKD--SSITVAFDDIPEEGLASPL--------RLEKVANEVTYRRMKDALIQLSK-GV 163
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
H R P+ + LFG+++ ++VK D SQK AI+ L+ K
Sbjct: 164 H-RGPAADLIPVLFGERQPSM--------SKTDVKFKP-FNSNLDHSQKDAISKALSGKN 213
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+ ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+L + +VRVG+
Sbjct: 214 -VFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGH 272
Query: 312 PARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQL 370
PAR+ P V +L ++++ +S + ++ L L + KD + I++ L+ L
Sbjct: 273 PARLLPQVLESALDAQVLRGDNSSLANDIRKEMKALNGKLLKA-KDRNTRREIQKELRTL 331
Query: 371 GKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFDLV--------------- 413
K + +++ V +V+ ++ VVL T TGA R+L+ +FDLV
Sbjct: 332 SKEERNRQQLAVTDVIKNSDVVLTTLTGA---FSRKLNNISFDLVIIDEAAQALEIACWI 388
Query: 414 ----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
RCILAGD QL P I S +A + G+G +L ER A ++ + + LT QYRM++
Sbjct: 389 ALLKASRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGNEVTSMLTVQYRMHEL 448
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
I W+SKE+Y + + S+VA+H+L D VK T T+ LLL+D GCE
Sbjct: 449 IMDWSSKELYDSKIKAHSSVAAHMLYDLEDVKKTSSTEPTLLLIDI--------AGCEME 500
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
S NEGEAE+ + H LI +GV PS I + +PY AQV L+ + +
Sbjct: 501 ERKDEEESTLNEGEAEVAMAHAKRLIQSGVQPSDIGIITPYAAQVVLLKTLRSNDDKLKD 560
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
+E++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TRA + +VCD+ T+
Sbjct: 561 IEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTDTVT 620
Query: 650 HNTFLARLLRHIRYF 664
++ FL RL I YF
Sbjct: 621 YDAFLKRL---IEYF 632
>gi|109105146|ref|XP_001117732.1| PREDICTED: DNA-binding protein SMUBP-2-like [Macaca mulatta]
Length = 920
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 254/694 (36%), Positives = 360/694 (51%), Gaps = 96/694 (13%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRCGSVAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R + L+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKTLIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ + D SQK+A++
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSSASEIHPLTFFNTSLDASQKEAVSFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL +V +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVVARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK +E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEVKLLRKELKGREEAAILESLTSANVVLATNTGASADGPLKLLPESHFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P ++S KA G+ +SL+ER A +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTVVSHKAALAGLSLSLMERLAEEYGARAV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYHGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
S L E D G N GE +V H+ +L+ AGV +AV SPY QV L
Sbjct: 494 --ASCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDVAVVSPYNLQVDLL 548
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 549 RQSLAHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRAR 605
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 606 RHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|406855655|pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
gi|406855656|pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 255/698 (36%), Positives = 362/698 (51%), Gaps = 104/698 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + + EN ++ L S G +C +
Sbjct: 4 VESFVTKQLDLLELERDAEVEERR-------SWQENIS----LKELQSRG-----VC--L 45
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV F R LP + + GD+V + + G+ + I
Sbjct: 46 LKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILT 105
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRID---RIQGLADTLTYERNCEALMLL 186
V +++VA + H F +S+ + R+ LA+ +TY R +AL+ L
Sbjct: 106 RVTQ-----KSVTVAFDESHD-------FQQSLDRENSYRLLKLANDVTYRRLKKALIAL 153
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A+
Sbjct: 154 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVLFA 201
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 202 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 260
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D
Sbjct: 261 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 313
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 314 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVID 373
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 374 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 433
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 434 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-- 491
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV IAV SPY Q
Sbjct: 492 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 542
Query: 574 VQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 543 VDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 599
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 600 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 637
>gi|115453945|ref|NP_001050573.1| Os03g0586900 [Oryza sativa Japonica Group]
gi|50399951|gb|AAT76339.1| putative DNA helicase [Oryza sativa Japonica Group]
gi|108709563|gb|ABF97358.1| DNA helicase family protein, expressed [Oryza sativa Japonica
Group]
gi|113549044|dbj|BAF12487.1| Os03g0586900 [Oryza sativa Japonica Group]
gi|215704640|dbj|BAG94268.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218193224|gb|EEC75651.1| hypothetical protein OsI_12407 [Oryza sativa Indica Group]
gi|222625290|gb|EEE59422.1| hypothetical protein OsJ_11580 [Oryza sativa Japonica Group]
Length = 651
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 229/675 (33%), Positives = 356/675 (52%), Gaps = 79/675 (11%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L EF M+ L+ +E+ AE+ E++ SSK +E + C +
Sbjct: 24 LQEFVSSMAPLIDLEKAAEISA------------ESATSSKTLE---------RRGC-VM 61
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL TGL G L+ F+ LPP D+V ++ + A + + QG V+
Sbjct: 62 ANLKCTDAQTGLMGKTLLEFQPNKGDVLPPHKFGTHDVVALK-PNKADAGSAALGQGVVY 120
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
L + +I+VA + D S L R++ LA+ +TY R +AL+ L K G+
Sbjct: 121 RLKD--SSITVAFDDIPEDGLNSPL--------RLEKLANEVTYRRMKDALVQLSK-GIQ 169
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
PS + LFG+ ++ D+A +S K D+SQK AI+ L + R
Sbjct: 170 T-GPSANLIPVLFGENPPMS---SKDVAKFSP------FNKNLDESQKDAISKAL-RSRD 218
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+LS +VR+G+P
Sbjct: 219 VFLLHGPPGTGKTTTIIEIILQEVKRGSKILACAASNIAVDNIVERLSRYRTKLVRLGHP 278
Query: 313 ARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLG 371
AR+ P V +L +++++ +S + ++ L L + KD + IR+ L+ L
Sbjct: 279 ARLLPQVLDSALDAQVLRADNSSLAGDIRKEMKVLNSKLLKA-KDKNTKRDIRKELRTLA 337
Query: 372 KTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFDLV---------------- 413
K +K+++ V +V+ +A VVL+T TGA+ ++LD TFDLV
Sbjct: 338 KEERKRQQLAVADVIKNADVVLSTLTGASS---KKLDGITFDLVIIDEAAQALEMACWIA 394
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
G RC+LAGD QL P I S +A + G+G +L ER + + + LT QYRM++ I
Sbjct: 395 LLKGPRCVLAGDHLQLPPTIQSAEAEKKGMGKTLFERLTEAYGDQITSMLTIQYRMHELI 454
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+W+SKE+Y + + S+VA H+L D VK + T+ ++L+DT GC+
Sbjct: 455 MNWSSKELYNNKIKAHSSVADHMLYDIEEVKRSSSTEPTIILIDT--------TGCDMEE 506
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGV 590
S NEGEA + + H L+ +GV S I + +PY AQV L+ + + +
Sbjct: 507 VKDEEESTMNEGEAAVSIAHAKLLVESGVRASDIGIITPYAAQVTCLKMMRNKDTKLKDL 566
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
E++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TRA + +VCD T+ +
Sbjct: 567 EISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCLVCDVETVSN 626
Query: 651 NTFLARLLRHIRYFG 665
+ FL RL+ + G
Sbjct: 627 DKFLKRLVEYFEENG 641
>gi|332837111|ref|XP_508608.3| PREDICTED: DNA-binding protein SMUBP-2 [Pan troglodytes]
gi|410247290|gb|JAA11612.1| immunoglobulin mu binding protein 2 [Pan troglodytes]
gi|410295562|gb|JAA26381.1| immunoglobulin mu binding protein 2 [Pan troglodytes]
gi|410335665|gb|JAA36779.1| immunoglobulin mu binding protein 2 [Pan troglodytes]
Length = 1001
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 255/695 (36%), Positives = 362/695 (52%), Gaps = 98/695 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 10 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 50
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 51 --LLKLQVSSQRTGLYGRLLVTFEPRRCGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 108
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 109 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 159
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A++
Sbjct: 160 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVSFA 207
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 208 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 266
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D
Sbjct: 267 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 319
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 320 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESHFDVVVID 379
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 380 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 439
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 440 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVAGHLLRDLPGVAATEETGVPLLLVDT-- 497
Query: 518 PYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC L+ S N GE +V H+ +L+ AGV IAV SPY QV
Sbjct: 498 ------AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDL 551
Query: 577 LRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 552 LRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA 608
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 609 RRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 643
>gi|410220680|gb|JAA07559.1| immunoglobulin mu binding protein 2 [Pan troglodytes]
Length = 997
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 255/695 (36%), Positives = 362/695 (52%), Gaps = 98/695 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRCGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A++
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVSFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESHFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVAGHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC L+ S N GE +V H+ +L+ AGV IAV SPY QV
Sbjct: 494 ------AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDL 547
Query: 577 LRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 LRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA 604
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|119392094|ref|NP_002171.2| DNA-binding protein SMUBP-2 [Homo sapiens]
gi|317373494|sp|P38935.3|SMBP2_HUMAN RecName: Full=DNA-binding protein SMUBP-2; AltName:
Full=ATP-dependent helicase IGHMBP2; AltName: Full=Glial
factor 1; Short=GF-1; AltName: Full=Immunoglobulin
mu-binding protein 2
gi|908917|gb|AAA70430.1| DNA helicase [Homo sapiens]
Length = 993
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 256/698 (36%), Positives = 361/698 (51%), Gaps = 104/698 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A+
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVLFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV IAV SPY Q
Sbjct: 494 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 544
Query: 574 VQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 545 VDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 601
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 602 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|406855654|pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 256/695 (36%), Positives = 361/695 (51%), Gaps = 98/695 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + + EN ++ L S G +C +
Sbjct: 4 VESFVTKQLDLLELERDAEVEERR-------SWQENIS----LKELQSRG-----VC--L 45
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV F R LP + + GD+V + + G+ + I
Sbjct: 46 LKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILT 105
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V +++VA + H D S S R+ + LA+ +TY R +AL+ L+K
Sbjct: 106 RVTQ-----KSVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIALKK- 155
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + LFG + + SE+ D SQK+A+ L++
Sbjct: 156 --YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVLFALSQ 204
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 205 KE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 263
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D +
Sbjct: 264 GHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKREKSN 316
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV------ 413
R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 317 FRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECA 376
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P +S KA G+ +SL+ER A + + L
Sbjct: 377 QALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTL 436
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 437 TVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT----- 491
Query: 521 SLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC E D G N GE +V H+ +L+ AGV IAV SPY QV
Sbjct: 492 ---AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDL 545
Query: 577 LRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 546 LRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA 602
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 603 RRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 637
>gi|401776|gb|AAA53082.1| DNA-binding protein [Homo sapiens]
Length = 993
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 256/698 (36%), Positives = 362/698 (51%), Gaps = 104/698 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A++
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVSFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ +V SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESVQQHSLDAVLARSDSAQNVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G + + S+VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYLGQVTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV IAV SPY Q
Sbjct: 494 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 544
Query: 574 VQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 545 VDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 601
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 602 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|355566218|gb|EHH22597.1| DNA-binding protein SMUBP-2 [Macaca mulatta]
Length = 921
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 255/695 (36%), Positives = 360/695 (51%), Gaps = 98/695 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + + EN ++ L S G +C +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERR-------SWQENIS----LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV F R LP + + GD+V + + G+ + I
Sbjct: 48 LKLQVSSQRTGLYGRLLVTFEPRRCGSVAALPSNSFTSGDIVGLYDAANEGSQLATGILT 107
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V +++VA + H D S S R+ + LA+ +TY R +AL+ L+K
Sbjct: 108 RVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIALKK- 157
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + LFG + + SE+ + D SQK+A++ L++
Sbjct: 158 --YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTSLDASQKEAVSFALSQ 206
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 207 KE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 265
Query: 310 GNPARISPAVASKSLGEIVK-SKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL +V S A VA D+RKD+ Q +D +
Sbjct: 266 GHPARLLESIQQHSLDAVVAWSDSAQIVA-------DIRKDIDQVFVKNKKTQDKREKSN 318
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV------ 413
R +K L K LK +E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 319 FRNEVKLLRKELKGREEAAILESLTSANVVLATNTGASADGPLKLLPESHFDVVVIDECA 378
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P ++S KA G+ +SL+ER A + L
Sbjct: 379 QALEASCWIPLLKARKCILAGDHKQLPPTVVSHKAALAGLSLSLMERLAEEYGARAVRTL 438
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AI WAS MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 439 TVQYRMHQAIMRWASDTMYHGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT----- 493
Query: 521 SLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC E D G N GE +V H+ +L+ AGV +AV SPY QV
Sbjct: 494 ---AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDVAVVSPYNLQVDL 547
Query: 577 LRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 LRQSLAHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA 604
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|397517199|ref|XP_003828806.1| PREDICTED: DNA-binding protein SMUBP-2 [Pan paniscus]
Length = 1001
Score = 322 bits (825), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 254/695 (36%), Positives = 362/695 (52%), Gaps = 98/695 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 10 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 50
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 51 --LLKLQVSSQRTGLYGRLLVTFEPRRCGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 108
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 109 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 159
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A++
Sbjct: 160 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVSFA 207
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 208 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 266
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q ++
Sbjct: 267 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQNKRE 319
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 320 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESHFDVVVID 379
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 380 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 439
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 440 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVAGHLLRDLPGVAATEETGVPLLLVDT-- 497
Query: 518 PYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC L+ S N GE +V H+ +L+ AGV IAV SPY QV
Sbjct: 498 ------AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDL 551
Query: 577 LRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 552 LRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA 608
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 609 RRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 643
>gi|73983575|ref|XP_540807.2| PREDICTED: DNA-binding protein SMUBP-2 [Canis lupus familiaris]
Length = 1010
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 256/693 (36%), Positives = 361/693 (52%), Gaps = 95/693 (13%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQE-ELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDT 71
++ F + +LL +ERDAE+E + + N P + L S G +C
Sbjct: 6 VESFVTKHLDLLELERDAEVEERRSWQENISP------------KVLQSRG-----VC-- 46
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L V S TGL G LV R LP + + GD+V + D AT +
Sbjct: 47 LLKLQVSSQRTGLYGRLLVTLEPRRCTSAAVLPSNSFTSGDIVGL--YDEGNQLATGILT 104
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
+++VA ++ H D S L R R+ LA+ +TY+R +AL+ L+K
Sbjct: 105 RITQR------SVTVAFDASH-DFQLS-LDRDRERAYRLLKLANDITYKRLKKALITLKK 156
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
+ P+ + + LFG A +E L + D SQK+A++ L+
Sbjct: 157 ---YHSGPASSLIEVLFGGSAPSP-------ASNTEPPL--FCNTSLDASQKEAVSFALS 204
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R
Sbjct: 205 QKE-LAIIHGPPGTGKTTTVVEIILQAVRQGLKVLCCAPSNIAVDNLVERLARCKQKILR 263
Query: 309 VGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAA 361
+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D +
Sbjct: 264 LGHPARLLESIQQHSLDAVLARSDNAQIVA-------DIRKDIDQAFVNNRQTQDRREKS 316
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRLDT-FDLV----- 413
+ +K L K LK++E+ + E L+SA VVLATNTGA+ PL DT FD+V
Sbjct: 317 SVWNEVKLLRKELKEREEAAMLESLTSAAVVLATNTGASSDGPLKLLPDTHFDVVVIDEC 376
Query: 414 --------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459
++CILAGD QL P +S KA G+ +SL+ER A H +
Sbjct: 377 AQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEHGARVVRT 436
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPY 519
LT QYRM+ AI WAS+ +Y G L + +VA HLL D P V T T PLLL+DT
Sbjct: 437 LTVQYRMHQAIMRWASEALYHGQLTAHPSVAGHLLRDLPGVAATEETGIPLLLVDT---- 492
Query: 520 GSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
GC L+ S N GE +V H+ +L+ AGV S IAV +PY QV LR
Sbjct: 493 ----AGCGLFELEDDDDQSKGNPGEVRLVSLHIQALVDAGVQASDIAVITPYNLQVDLLR 548
Query: 579 ERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
+ L PE +E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA +
Sbjct: 549 QSLAHRHPE---LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTRARR 605
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
HVAVVCDS T+ ++ FL L+ H G V+ A
Sbjct: 606 HVAVVCDSRTVSNHAFLKTLVDHFTEHGEVRTA 638
>gi|74210936|dbj|BAE25072.1| unnamed protein product [Mus musculus]
Length = 860
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 248/694 (35%), Positives = 361/694 (52%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + +LL +ERDAE+E + + E+S + L S G +C
Sbjct: 4 STVESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LRELQSRG-----VC- 46
Query: 71 TICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V S TGL G LV F + LP + + GD+V + + AT +
Sbjct: 47 -LLKLQVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVL 105
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+++VA + H +L R+ LA+ +TY+R +ALM L+
Sbjct: 106 TRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G +E L+ ++ T D SQK+A++ L
Sbjct: 156 K---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYN---------TTLDLSQKEAVSFAL 203
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 204 AQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRIL 262
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D
Sbjct: 263 RLGHPARLLESVQHHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREK 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV---- 413
R +K L K LK++E+ + + L++A VVLATNTGA+ D ++ L D FD+V
Sbjct: 316 GNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDE 375
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S +A G+ SL+ER A H +
Sbjct: 376 CAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVR 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ MY G L S +VA HLL D P V T T+ PLLL+DT
Sbjct: 436 MLTVQYRMHQAIMCWASEAMYHGQLTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDT--- 492
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV L
Sbjct: 493 -----AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLL 547
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AV+++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 RQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRAR 604
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 638
>gi|355751887|gb|EHH56007.1| DNA-binding protein SMUBP-2 [Macaca fascicularis]
Length = 921
Score = 322 bits (824), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 255/698 (36%), Positives = 362/698 (51%), Gaps = 98/698 (14%)
Query: 10 QSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ ++ F + +LL +ERDAE E + + EN ++ L S G +C
Sbjct: 3 ETAVESFVTKQLDLLELERDAEGEERR-------SWQENIS----LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRCGSVAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ + D SQK+A++
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTSLDASQKEAVSFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL +V +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVVARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK +E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEVKLLRKELKGREEAAILESLTSANVVLATNTGASADGPLKLLPESHFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P ++S KA G+ +SL+ER A +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTVVSHKAALAGLSLSLMERLAEEYGARAV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYHGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV +AV SPY Q
Sbjct: 494 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDVAVVSPYNLQ 544
Query: 574 VQHLRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 545 VDLLRQSLAHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 601
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 602 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|296218993|ref|XP_002755681.1| PREDICTED: DNA-binding protein SMUBP-2 [Callithrix jacchus]
Length = 1008
Score = 322 bits (824), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 254/692 (36%), Positives = 359/692 (51%), Gaps = 92/692 (13%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + ELL +ERDAE+E + + S ++ L S G +C +
Sbjct: 6 VESFVTKQLELLELERDAEVEERR-----------SWQESISLKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV R LP + + GD+V + G+ + I
Sbjct: 48 LKLQVSSQRTGLYGRLLVTLEPRRCGSAAALPSNSFTSGDIVGLYDAAHEGSQLATGILT 107
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V +++VA + H D S S R+ + LA+ +TY+R +AL+ L+K
Sbjct: 108 RV-----TPRSVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYKRLKKALIALKK- 157
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + LFG + + SE+ D SQK+A++ L++
Sbjct: 158 --YHSGPASSLIEVLFG---------RSAPSPASEIGPLTFFNTCLDTSQKEAVSFALSQ 206
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 207 KE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 265
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D +
Sbjct: 266 GHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVRNKKTQDKREKSN 318
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRLDT--FDLV------ 413
R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 319 FRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPEGHFDMVVIDECA 378
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
RCILAGD QL P +S +A G+ +SL+ER A + + L
Sbjct: 379 QALEASCWIPLLQAGRCILAGDHKQLPPTTVSHRAALAGLSLSLMERLANEYGVSVVRTL 438
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AI WAS+ MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 439 TVQYRMHQAIMRWASEAMYLGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT----- 493
Query: 521 SLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
GC L+ S N GE +V H+ +L+ AGV IAV SPY QV LR+
Sbjct: 494 ---AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQ 550
Query: 580 RLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA +H
Sbjct: 551 SLAHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRH 607
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
VAV+CDS T+ H+ FL L+ + G V+ A
Sbjct: 608 VAVICDSHTVNHHAFLKTLVEYFTQHGEVRTA 639
>gi|153945808|ref|NP_033238.2| DNA-binding protein SMUBP-2 [Mus musculus]
gi|74149012|dbj|BAE32174.1| unnamed protein product [Mus musculus]
gi|148700981|gb|EDL32928.1| immunoglobulin mu binding protein 2 [Mus musculus]
gi|189442115|gb|AAI67242.1| Immunoglobulin mu binding protein 2 [synthetic construct]
Length = 993
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 248/694 (35%), Positives = 361/694 (52%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + +LL +ERDAE+E + + E+S + L S G +C
Sbjct: 4 STVESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LRELQSRG-----VC- 46
Query: 71 TICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V S TGL G LV F + LP + + GD+V + + AT +
Sbjct: 47 -LLKLQVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVL 105
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+++VA + H +L R+ LA+ +TY+R +ALM L+
Sbjct: 106 TRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G +E L+ ++ T D SQK+A++ L
Sbjct: 156 K---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYN---------TTLDLSQKEAVSFAL 203
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 204 AQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRIL 262
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D
Sbjct: 263 RLGHPARLLESVQHHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREK 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV---- 413
R +K L K LK++E+ + + L++A VVLATNTGA+ D ++ L D FD+V
Sbjct: 316 GNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDE 375
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S +A G+ SL+ER A H +
Sbjct: 376 CAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVR 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ MY G L S +VA HLL D P V T T+ PLLL+DT
Sbjct: 436 MLTVQYRMHQAIMCWASEAMYHGQLTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDT--- 492
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV L
Sbjct: 493 -----AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLL 547
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AV+++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 RQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRAR 604
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 638
>gi|114145750|ref|NP_001041463.1| zinc finger protein 2 [Ciona intestinalis]
gi|93003124|tpd|FAA00145.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 1048
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 235/635 (37%), Positives = 333/635 (52%), Gaps = 69/635 (10%)
Query: 68 LCDTICNLFVVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
LC I L V TGL G + F ++ + LP GD+V + S + +
Sbjct: 42 LC--IPKLEVTGVKTGLYGRTVAKFGLKSADKSLPFNVFKTGDIVGIDQVQSETSGS--- 96
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
G V + + ISVA E T L + I+ LA+ +TY+R AL L
Sbjct: 97 --GIVSHTSDKH--ISVAFEGSEMRDTLDSLAHNRNSVALIK-LANEVTYKRLKRALEDL 151
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + PS + LFGD T ++ +L + + + + ++ Q A+
Sbjct: 152 KK---YSDGPSQHLIEVLFGD----TKPQQFNLQELT------FVNQNLNECQHNAVKFA 198
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVG--- 303
L++ L II GPPGTGKT + E+IA+ V+ G +VL AP+N AVDN+VEKLS +
Sbjct: 199 LSQSE-LAIIHGPPGTGKTTTVVEVIAQLVKAGRKVLACAPSNVAVDNLVEKLSSISVDK 257
Query: 304 -----LNIVRVGNPAR-ISPAVASKSLGEIVKSK-LASFVAEFERKKSDLRKDLRQCLKD 356
++IVR+G+PAR + V SL +V S A+ V + ++K L +C D
Sbjct: 258 VSGGKMSIVRLGHPARMLEKEVKQLSLDALVSSSDAAAIVRDVRSDIEAVQKSLSRC-PD 316
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFD-- 411
+RQ K L LK++E + + E+LSSA V+LATN GA A ++ L D FD
Sbjct: 317 KGKRFSLRQERKLLFSELKQRENKALNEILSSADVILATNVGAHAKGPLQHLPHDYFDDV 376
Query: 412 -----------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
L +RCILAGD QL P I+S KA G+ +LLER L
Sbjct: 377 IIDECGQSLEAACWISLLRARRCILAGDHLQLPPTIISHKAAANGLATTLLERMINLQGD 436
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+ + LT QYRM+ I WASK+MY G L ++ V HLL D P V T T+ PLLL+D
Sbjct: 437 SVVSMLTEQYRMHRDIMHWASKKMYDGKLTANCKVQCHLLSDMPGVDNTEDTRLPLLLVD 496
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
T GCE + + N GEA IV HV +L+ AGV S IA+ SPY Q
Sbjct: 497 T--------AGCEMYESESEESISKANTGEAMIVCSHVQTLVKAGVKESDIAIISPYNLQ 548
Query: 574 VQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAIT 633
V LR+ L + + +E+ ++D FQGRE +AVI+++VRSN +GFL D RR+NVA+T
Sbjct: 549 VDLLRQSLKE--KHPNIEIKSVDGFQGREKEAVILTLVRSNLDREIGFLSDKRRLNVAVT 606
Query: 634 RACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVK 668
RA +H+AVVCDS+T+C + F+ L+ HI G ++
Sbjct: 607 RARRHLAVVCDSTTVCSDNFIKSLIDHITEHGDIR 641
>gi|427781487|gb|JAA56195.1| Putative dna replication helicase [Rhipicephalus pulchellus]
Length = 773
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 252/687 (36%), Positives = 355/687 (51%), Gaps = 81/687 (11%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
LD F ++ LL +ER E+E QE+ + ++ L S G LC
Sbjct: 25 LDGFVEKHLSLLELERQEEVEQNAKLQEKYS--------------VKELQSKG-----LC 65
Query: 70 DTICNLFVVSTSTGLGGMHLVLFR-VEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
I L + TGL G + FR LP S GD+V V V S A C
Sbjct: 66 --ITKLVLDCAHTGLYGRTVCKFRSCHHGAPLPSHGFSNGDIVGV-VVASDAAREVIC-S 121
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V ++ T++ D L R+ + LA+ +TY R L L+K
Sbjct: 122 GVVSSVAPANITLAF-------DEGRDTLDADDGRVFNLLKLANDVTYRRLKRTLEKLRK 174
Query: 189 NGLHKRNPSIAAVV-TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
R + ++ LFG V+ E A ++ K D+SQ++A+A L
Sbjct: 175 T----REIRYSNLIEILFGT---VSPTEAPISASQKPIEFSN---KALDESQQEAVAFSL 224
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K L II GPPGTGKT L E+I + +QG +VLV AP+N AVDN+VE+L L +V
Sbjct: 225 RQKE-LAIIHGPPGTGKTTTLVEVILQCSKQGSKVLVCAPSNVAVDNLVERLLCTSLKVV 283
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
R+G+PAR+ PA+A SL I+ +S + + + RK+ D K +R
Sbjct: 284 RLGHPARLLPAIARHSLDAILARSDDFAIIGDI-RKEIDELMSSSSKSKAKDKGYQMRGK 342
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIR------RLDTFD------- 411
L +L K LK +E+ + +L+SA VVL+T T A+D PL ++ D
Sbjct: 343 LSELRKELKDRERRAIGRILASADVVLSTLTTASDDGPLKNLPEGHFQVAVIDECSQALE 402
Query: 412 -------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
L +CILAGD QL P I+S A +GG+ V+L+ERA LH + L TQY
Sbjct: 403 VACWMALLRAPKCILAGDHLQLPPTIVSEAAAKGGLEVTLMERALRLHGEAVVRMLVTQY 462
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM++ I W+S +YGG L++ ++VA+HLL D P V+ T PLLL+DT
Sbjct: 463 RMHELIMRWSSDRLYGGRLLAHASVAAHLLRDLPGVEDNDDTALPLLLIDT--------A 514
Query: 525 GCEE-HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD 583
GC LD S NEGEA++V HV L+ +GV S IAV SPY QV+ +R RL
Sbjct: 515 GCGMVELDTPDDESKGNEGEADLVAIHVERLVSSGVPASEIAVISPYNLQVELIRLRLS- 573
Query: 584 LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVC 643
+ G+E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA +H+AVVC
Sbjct: 574 -AQHPGLEIRSVDGFQGREKEAVVMSFVRSNDTGTVGFLAEDRRINVAVTRARRHLAVVC 632
Query: 644 DSSTICHNTFLARLLRHIRYFGRVKHA 670
DS+T+ + FL L+ +I G V+ A
Sbjct: 633 DSTTMSRHDFLKSLVDYIGNEGEVRSA 659
>gi|426369511|ref|XP_004051731.1| PREDICTED: DNA-binding protein SMUBP-2 [Gorilla gorilla gorilla]
Length = 997
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 253/692 (36%), Positives = 359/692 (51%), Gaps = 92/692 (13%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + V ++ L S G +C +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENVS-----------LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV F R LP + + GD+V + + G+ + I
Sbjct: 48 LKLQVSSQRTGLYGRLLVTFEPRRCGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILT 107
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V ++ VA + H D S S R+ + LA+ +TY R +AL+ L+K
Sbjct: 108 RVTQK-----SVMVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIALKK- 157
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + LFG + + SE+ D SQK+A++ L++
Sbjct: 158 --YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVSFALSQ 206
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 207 KE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 265
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D +
Sbjct: 266 GHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKREKSN 318
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV------ 413
R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 319 FRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPKSHFDVVVIDECA 378
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P +S KA G+ +SL+ER A + + L
Sbjct: 379 QALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTL 438
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 439 TVQYRMHQAIMRWASDTMYLGQLTAHSSVAGHLLRDLPGVAATEETGVPLLLVDT----- 493
Query: 521 SLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
GC L+ S N GE +V H+ +L+ AGV IAV SPY QV LR+
Sbjct: 494 ---AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVLARDIAVISPYNLQVDLLRQ 550
Query: 580 RL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA +H
Sbjct: 551 SLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRH 607
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
VA++CDS T+ ++ FL L+ + G V+ A
Sbjct: 608 VAIICDSHTVNNHAFLKTLVEYFIQHGEVRTA 639
>gi|42490896|gb|AAH66215.1| Ighmbp2 protein, partial [Mus musculus]
Length = 866
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 247/694 (35%), Positives = 360/694 (51%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + +LL +ERDAE+E + + E+S + L S G +C
Sbjct: 4 STVESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LRELQSRG-----VC- 46
Query: 71 TICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V S TGL G LV F + LP + + GD+V + + AT +
Sbjct: 47 -LLKLQVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVL 105
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+++VA + H +L R+ LA+ +TY+R +ALM L+
Sbjct: 106 TRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G +E L+ ++ T D SQK+A++ L
Sbjct: 156 K---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYN---------TTLDLSQKEAVSFAL 203
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 204 AQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRIL 262
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D
Sbjct: 263 RLGHPARLLESVQHHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREK 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV---- 413
R +K L + LK++E+ + + L++A VVLATNTGA+ D ++ L D FD+V
Sbjct: 316 GNFRSEIKLLRRELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDE 375
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P S +A G+ SL+ER A H +
Sbjct: 376 CAQALEASCWIPLLKAPKCILAGDHRQLPPTTASHRAALAGLSRSLMERLAEKHGAGVVR 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ MY G L S +VA HLL D P V T T+ PLLL+DT
Sbjct: 436 MLTVQYRMHQAIMCWASEAMYHGQLTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDT--- 492
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV L
Sbjct: 493 -----AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLL 547
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AV+++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 RQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRAR 604
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 638
>gi|427779915|gb|JAA55409.1| Putative dna replication helicase [Rhipicephalus pulchellus]
Length = 733
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 250/684 (36%), Positives = 352/684 (51%), Gaps = 75/684 (10%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
LD F ++ LL +ER E+E + ++ L S G LC I
Sbjct: 25 LDGFVEKHLSLLELERQEEVE-----------QNAKLQEKYSVKELQSKG-----LC--I 66
Query: 73 CNLFVVSTSTGLGGMHLVLFR-VEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFV 131
L + TGL G + FR LP S GD+V V V S A C G V
Sbjct: 67 TKLVLDCAHTGLYGRTVCKFRSCHHGAPLPSHGFSNGDIVGV-VVASDAAREVIC-SGVV 124
Query: 132 HNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGL 191
++ T++ D L R+ + LA+ +TY R L L+K
Sbjct: 125 SSVAPANITLAF-------DEGRDTLDADDGRVFNLLKLANDVTYRRLKRTLEKLRKT-- 175
Query: 192 HKRNPSIAAVV-TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKK 250
R + ++ LFG V+ E A ++ K D+SQ++A+A L +K
Sbjct: 176 --REIRYSNLIEILFGT---VSPTEAPISASQKPIEFSN---KALDESQQEAVAFSLRQK 227
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
L II GPPGTGKT L E+I + +QG +VLV AP+N AVDN+VE+L L +VR+G
Sbjct: 228 E-LAIIHGPPGTGKTTTLVEVILQCSKQGSKVLVCAPSNVAVDNLVERLLCTSLKVVRLG 286
Query: 311 NPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+PAR+ PA+A SL I+ +S + + + RK+ D K +R L +
Sbjct: 287 HPARLLPAIARHSLDAILARSDDFAIIGDI-RKEIDELMSSSSKSKAKDKGYQMRGKLSE 345
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIR------RLDTFD---------- 411
L K LK +E+ + +L+SA VVL+T T A+D PL ++ D
Sbjct: 346 LRKELKDRERRAIGRILASADVVLSTLTTASDDGPLKNLPEGHFQVAVIDECSQALEVAC 405
Query: 412 ----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L +CILAGD QL P I+S A +GG+ V+L+ERA LH + L TQYRM+
Sbjct: 406 WMALLRAPKCILAGDHLQLPPTIVSEAAAKGGLEVTLMERALRLHGEAVVRMLVTQYRMH 465
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
+ I W+S +YGG L++ ++VA+HLL D P V+ T PLLL+DT GC
Sbjct: 466 ELIMRWSSDRLYGGRLLAHASVAAHLLRDLPGVEDNDDTALPLLLIDT--------AGCG 517
Query: 528 E-HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPE 586
LD S NEGEA++V HV L+ +GV S IAV SPY QV+ +R RL +
Sbjct: 518 MVELDTPDDESKGNEGEADLVAIHVERLVSSGVPASEIAVISPYNLQVELIRLRLS--AQ 575
Query: 587 AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
G+E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA +H+AVVCDS+
Sbjct: 576 HPGLEIRSVDGFQGREKEAVVMSFVRSNDTGTVGFLAEDRRINVAVTRARRHLAVVCDST 635
Query: 647 TICHNTFLARLLRHIRYFGRVKHA 670
T+ + FL L+ +I G V+ A
Sbjct: 636 TMSRHDFLKSLVDYIGNEGEVRSA 659
>gi|730752|sp|P40694.1|SMBP2_MOUSE RecName: Full=DNA-binding protein SMUBP-2; AltName:
Full=ATP-dependent helicase IGHMBP2; AltName:
Full=Cardiac transcription factor 1; Short=CATF1;
AltName: Full=Immunoglobulin mu-binding protein 2
gi|293806|gb|AAA40143.1| DNA-binding protein [Mus musculus]
Length = 993
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 247/694 (35%), Positives = 360/694 (51%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + +LL +ERDAE+E + + E+S + L S G +C
Sbjct: 4 STVESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LRELQSRG-----VC- 46
Query: 71 TICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V S TGL G LV F + LP + + GD+V + + AT +
Sbjct: 47 -LLKLQVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVL 105
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+++VA + H +L R+ LA+ +TY+R +ALM L+
Sbjct: 106 TRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G +E L+ ++ T D SQK+A++ L
Sbjct: 156 K---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYN---------TTLDLSQKEAVSFAL 203
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 204 AQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRIL 262
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D
Sbjct: 263 RLGHPARLLESVQHHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREK 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV---- 413
R +K L K LK++E+ + + L++A VVLATNTGA+ D ++ L D FD+V
Sbjct: 316 GNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDE 375
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S +A G+ SL+ER A H +
Sbjct: 376 CAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVR 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ MY G S +VA HLL D P V T T+ PLLL+DT
Sbjct: 436 MLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDT--- 492
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV L
Sbjct: 493 -----AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLL 547
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AV+++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 RQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRAR 604
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RHVAVICDSHTVNNHAFLETLVDYFTEHGEVRTA 638
>gi|356504807|ref|XP_003521186.1| PREDICTED: DNA-binding protein SMUBP-2-like [Glycine max]
Length = 648
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 222/628 (35%), Positives = 337/628 (53%), Gaps = 69/628 (10%)
Query: 66 QELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSR-GACAT 124
Q+ TI NL V TGL G L+ F+ LP D+V +++ + G+ A
Sbjct: 51 QKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPAL 110
Query: 125 SCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALM 184
QG V+ L + +I++A + D S L R++ +A+ +TY R +AL+
Sbjct: 111 G--QGVVYRLKD--SSITIAFDDIPEDGLNSPL--------RLEKVANEVTYRRMKDALI 158
Query: 185 LLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIA 244
L K G+HK P+ + LFG++ + + D++ K D SQK+A++
Sbjct: 159 QLSK-GVHK-GPASDLIPVLFGERPPT--VSKKDVSSTP-------FNKNLDHSQKEAVS 207
Query: 245 LGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGL 304
L+ K + ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+L +
Sbjct: 208 KALSSKN-VFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRV 266
Query: 305 NIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC------LKDDS 358
+VRVG+PAR+ P V +L V S +A +D+RK+++ KD +
Sbjct: 267 KLVRVGHPARLLPQVLDSALDAQVLRGDNSGLA------NDIRKEMKALNGKLLKTKDRN 320
Query: 359 LAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT--FDLV--- 413
I++ L+ L K +K+++ V +VL SA V+L T GA ++LD+ FDLV
Sbjct: 321 TRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGA---FSKKLDSTSFDLVIID 377
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
G RCILAGD QL P I S +A + G+G +L ER A ++ +
Sbjct: 378 EAAQALEIACWIPILKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEIT 437
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
+ LT QYRM++ I W+SKE+Y + + +V +H+L D VK T T+ LLL+DT
Sbjct: 438 SMLTIQYRMHELIMDWSSKELYNSKIKAHPSVTAHMLYDLEGVKRTNSTEPTLLLIDT-- 495
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC+ S +NEGEAE+ V H L+ +GV PS I + +PY AQV L
Sbjct: 496 ------AGCDMEEKKDEEDSTFNEGEAEVTVTHAKRLVQSGVLPSDIGIITPYAAQVVLL 549
Query: 578 RERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
+ + + VE++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TR+ +
Sbjct: 550 KMLKNKEDQLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRR 609
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFG 665
+VCD+ T+ + FL RL+ + G
Sbjct: 610 QCCLVCDTETVSGDGFLKRLIEYFEEHG 637
>gi|354502665|ref|XP_003513404.1| PREDICTED: DNA-binding protein SMUBP-2-like [Cricetulus griseus]
gi|344257739|gb|EGW13843.1| DNA-binding protein SMUBP-2 [Cricetulus griseus]
Length = 987
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 249/694 (35%), Positives = 357/694 (51%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + +LL +ERDAE+E + + E+S ++ L S G +C
Sbjct: 4 STVESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LKELQSRG-----VC- 46
Query: 71 TICNLFVVSTSTGLGGMHLVLFRVEGNHR---LPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V S TGL G LV F LP + + GD+V + + AT +
Sbjct: 47 -LLKLQVSSQCTGLYGQRLVTFEPRKFGPVVVLPSNSFTSGDIVGLYDANESSQLATGVL 105
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+++VA + H +L R+ LA+ +TY+R +ALM L+
Sbjct: 106 TRITQK------SVTVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G E L ++ D SQK+A++ L
Sbjct: 156 K---YHCGPASSLIDVLLGGSTPSPTTEIPSLTFYN---------TALDPSQKEAVSFAL 203
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K + II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 204 AQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAMCKKRIL 262
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ +V SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 RLGHPARLLESVQQHSLDAVLARSDNAQIVA-------DIRKDIDQVFGKNKKTQDKREK 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV---- 413
+ R +K L K LK++E+ + L++A VVLATNTGA +D ++ L + FD+V
Sbjct: 316 SNFRNEIKLLRKELKEREEAATVQSLTAADVVLATNTGASSDGPLKLLPENHFDVVVVDE 375
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S KA G+ SL+ER A H +
Sbjct: 376 CAQALEASCWIPLLKAPKCILAGDHKQLPPTTISHKAALAGLSRSLMERLAEKHGAGVVR 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 436 MLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT--- 492
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC LD + S N GE +V H+ +L+ AGV IAV +PY QV L
Sbjct: 493 -----AGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLL 547
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L PE +E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 RQSLSSKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRAR 604
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++TFL L+ + G V+ A
Sbjct: 605 RHVAVICDSRTVNNHTFLKTLVDYFTEHGEVRTA 638
>gi|357121239|ref|XP_003562328.1| PREDICTED: DNA-binding protein SMUBP-2-like [Brachypodium
distachyon]
Length = 652
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 219/614 (35%), Positives = 328/614 (53%), Gaps = 57/614 (9%)
Query: 74 NLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHN 133
NL TGL G L+ F+ LPP D+V ++ + A + S QG V+
Sbjct: 63 NLKCTDAQTGLMGKTLLEFQPNKGDVLPPHKFGTHDVVALKP-NKADAGSASLGQGVVYR 121
Query: 134 LGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHK 193
L + +I+VA + D S L R++ LA+ +TY R +AL+ L K +
Sbjct: 122 LKD--SSITVAFDDIPEDGLNSPL--------RLEKLANEVTYRRMKDALIQLSK--AIQ 169
Query: 194 RNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPL 253
PS V LFG E + L VK K DDSQK AI+ L + R +
Sbjct: 170 TGPSANLVPVLFG--------ENSPLCSKDAVKFSPF-NKNLDDSQKDAISKAL-RSRDV 219
Query: 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPA 313
++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+LS +VR+G+PA
Sbjct: 220 FLLHGPPGTGKTTTIIEIILQEVKRGSKILACAASNIAVDNIVERLSQYRTKLVRLGHPA 279
Query: 314 RISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGK 372
R+ P V +L +++++ +S + ++ L L + KD + IR+ LK L K
Sbjct: 280 RLLPQVLDSALDAQVLRADNSSLAGDIRKEMKVLNSKLLKA-KDRNTKRDIRKELKTLAK 338
Query: 373 TLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFDLV----------------- 413
+K+++ V +V+ +A VVL+T TGA+ ++LD TFDLV
Sbjct: 339 EERKRQQLAVADVIKNADVVLSTLTGASS---KKLDGITFDLVIIDEAAQALEVACWIAL 395
Query: 414 --GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
G RC+LAGD QL P I S +A + G+G +L ER + + + LT QYRM++ I
Sbjct: 396 LKGPRCVLAGDHLQLPPTIQSVEAEKKGMGKTLFERLTEGYGDKITSMLTIQYRMHELIM 455
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
+W+SKE+Y + + S+VA H+L D V + T+ ++L+DT GC+
Sbjct: 456 NWSSKELYNNKIKAHSSVAGHMLYDLENVNRSSSTEPTIILIDT--------TGCDMEEV 507
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
S NEGEA + V H L+ +GV S I + +PY AQV L+ + + +E
Sbjct: 508 KDEEESTMNEGEAAVSVAHAKLLVESGVLASDIGIITPYSAQVTCLKMMRNKDAKLKDLE 567
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TRA + +VCD+ T+ ++
Sbjct: 568 ISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCIVCDAETVSND 627
Query: 652 TFLARLLRHIRYFG 665
FL RL+ + G
Sbjct: 628 KFLKRLVEYFEENG 641
>gi|74214996|dbj|BAE33491.1| unnamed protein product [Mus musculus]
Length = 993
Score = 318 bits (815), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 249/694 (35%), Positives = 361/694 (52%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + +LL +ERDAE+E + + E+S + L S G +C
Sbjct: 4 STVESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LRELQSRG-----VC- 46
Query: 71 TICNLFVVSTSTGLGGMHLVLF--RVEGNHR-LPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V S TGL G LV F R G LP + + GD+V + + AT +
Sbjct: 47 -LLKLQVSSQRTGLYGQRLVTFEPREFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVL 105
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+++VA + H +L R+ LA+ +TY+R +ALM L+
Sbjct: 106 TRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G +E L+ ++ T D SQK+A++ L
Sbjct: 156 K---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYN---------TTLDLSQKEAVSFAL 203
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 204 AQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRIL 262
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D
Sbjct: 263 RLGHPARLLESVQHHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREK 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV---- 413
R +K L K LK++E+ + + L++A VVLATNTGA+ D ++ L D FD+V
Sbjct: 316 GNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDE 375
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S +A G+ SL+ER A H +
Sbjct: 376 CAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVR 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ MY G L S +VA HLL D P V T T+ PLLL+DT
Sbjct: 436 MLTVQYRMHQAIMCWASEAMYHGQLTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDT--- 492
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L+ + S N E +V H+ +L+ AGV IAV +PY QV L
Sbjct: 493 -----AGCGLLELEEEDSQSKGNPSEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLL 547
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AV+++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 RQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRAR 604
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 638
>gi|74191771|dbj|BAE32841.1| unnamed protein product [Mus musculus]
Length = 1066
Score = 318 bits (814), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 249/694 (35%), Positives = 361/694 (52%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + +LL +ERDAE+E + + E+S + L S G +C
Sbjct: 77 STVESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LRELQSRG-----VC- 119
Query: 71 TICNLFVVSTSTGLGGMHLVLF--RVEGNHR-LPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V S TGL G LV F R G LP + + GD+V + + AT +
Sbjct: 120 -LLKLQVSSQRTGLYGQRLVTFEPREFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVL 178
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+++VA + H +L R+ LA+ +TY+R +ALM L+
Sbjct: 179 TRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 228
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G +E L+ ++ T D SQK+A++ L
Sbjct: 229 K---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYN---------TTLDLSQKEAVSFAL 276
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 277 AQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRIL 335
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D
Sbjct: 336 RLGHPARLLESVQHHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREK 388
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV---- 413
R +K L K LK++E+ + + L++A VVLATNTGA+ D ++ L D FD+V
Sbjct: 389 GNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDE 448
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S +A G+ SL+ER A H +
Sbjct: 449 CAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVR 508
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ MY G L S +VA HLL D P V T T+ PLLL+DT
Sbjct: 509 MLTVQYRMHQAIMCWASEAMYHGQLTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDT--- 565
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L+ + S N E +V H+ +L+ AGV IAV +PY QV L
Sbjct: 566 -----AGCGLLELEEEDSQSKGNPSEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLL 620
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AV+++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 621 RQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRAR 677
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 678 RHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 711
>gi|2498040|sp|Q60560.1|SMBP2_MESAU RecName: Full=DNA-binding protein SMUBP-2; AltName:
Full=ATP-dependent helicase IGHMBP2; AltName:
Full=Immunoglobulin mu-binding protein 2; AltName:
Full=Insulin II gene enhancer-binding protein; AltName:
Full=RIPE3B-binding complex 3B2 p110 subunit;
Short=RIP-1
gi|290919|gb|AAB00104.1| insulin II gene enhancer-binding protein [Mesocricetus auratus]
Length = 989
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 245/694 (35%), Positives = 358/694 (51%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + ELL +ERDAE+E + + E+S ++ L S G +C
Sbjct: 4 STVESFVAQQLELLELERDAEVEERR-------SWQEHSS----LKELQSRG-----VC- 46
Query: 71 TICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V S TGL G LV F ++ LP + + GD+V + + AT +
Sbjct: 47 -LLKLQVSSQCTGLYGQRLVTFEPRKLGPVVVLPSNSFTSGDIVGLYDANESSQLATGVL 105
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+++VA + H +L R+ LA+ +TY+R +ALM L+
Sbjct: 106 TRITQK------SVTVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G + + +E+ D SQK+A++ L
Sbjct: 156 K---YHSGPASSLIDVLLGG---------SSPSPTTEIPPFTFYNTALDPSQKEAVSFAL 203
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K + II GPPGTGKT + EII +AV+QG ++L AP+N AVDN+VE+L+ I+
Sbjct: 204 AQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERLALCKKRIL 262
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ + SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 RLGHPARLLESAQQHSLDAVLARSDNAQIVA-------DIRKDIDQVFGKNKKTQDKREK 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV---- 413
+ R +K L K LK++E+ + + L++A VVLATNTGA +D ++ L + FD+V
Sbjct: 316 SNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPENHFDVVVVDE 375
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S KA G+ SL+ER H
Sbjct: 376 CAQALEASCWIPLLKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVR 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 436 MLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT--- 492
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC LD + S N GE +V H+ +L+ AGV IAV +PY QV L
Sbjct: 493 -----AGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLL 547
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 RQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRAR 604
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RHVAVICDSRTVNNHAFLKTLVDYFTEHGEVRTA 638
>gi|194218569|ref|XP_001917022.1| PREDICTED: DNA-binding protein SMUBP-2 [Equus caballus]
Length = 1004
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 237/634 (37%), Positives = 338/634 (53%), Gaps = 76/634 (11%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGA-CATSCI 127
+ L V S TGL G LV F R + LP + + GD+V + + G+ AT +
Sbjct: 67 LLKLQVSSQRTGLYGRLLVTFEPRRCVSSAVLPSNSFTSGDIVGLYDAANEGSQLATGIL 126
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
++SVA + H D S S R+ + LA+ +TY+R +AL+ L+
Sbjct: 127 TRITQK------SVSVAFDESH-DCQLSLDRESSYRLLK---LANDVTYKRQKKALITLR 176
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + LFG + + SE+ + D SQK+A+ L
Sbjct: 177 K---YHSGPASSLIEVLFG---------ASAPSPASEIGPLTFCNASLDASQKEAVKFAL 224
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
++K L +I GPPGTGKT + E+I + V+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 225 SQKE-LAVIHGPPGTGKTTTVVEVILQVVKQGLKVLCCAPSNIAVDNLVERLAQCKQRIL 283
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQC------LKDDSLA 360
R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +++
Sbjct: 284 RLGHPARLLESIQQHSLDAVLARSDNAQIVA-------DIRKDIDQVFVKNKKIQEKQEK 336
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRLD-TFDLV---- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA+ PL D FD+V
Sbjct: 337 SNFRSEIKLLRKELKEREEAAMLESLTSADVVLATNTGASPDGPLKLLPDGYFDVVVIDE 396
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
++C+LAGD QL P I+S KA G+ +SL+ER + +
Sbjct: 397 CAQALEASCWIPLLKARKCVLAGDHKQLPPTIVSHKAALAGLSLSLMERLDQEYGARVVR 456
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ +Y G L + +VA HLL D P V T T PLLL+DT
Sbjct: 457 TLTVQYRMHQAIMQWASEALYAGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT--- 513
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L+ S N GE +V HV +L+ AGV S IAV +PY QV L
Sbjct: 514 -----AGCGLFELEEEDEQSKGNPGEVRLVALHVQALVDAGVCASDIAVITPYNLQVDLL 568
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 569 RQSLAHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRAR 625
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAVVCDS T+ ++ FL LL + G V+ A
Sbjct: 626 RHVAVVCDSRTVNNHAFLKTLLDYCTVHGEVRTA 659
>gi|351709407|gb|EHB12326.1| DNA-binding protein SMUBP-2 [Heterocephalus glaber]
Length = 982
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 250/723 (34%), Positives = 361/723 (49%), Gaps = 105/723 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + LL +ERDAE++ + + + S Q +C +
Sbjct: 6 VETFVSKQLYLLELERDAEVQERRSWQENISLKELQS----------------QGVC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVR-VCDSRGACATSCIQ 128
L V S TGL G LV F R LP + + GD+V + + G AT +
Sbjct: 48 LKLQVSSQRTGLYGRLLVTFEPRRCGSVAVLPSNSFTSGDIVGLYDSANEGGQLATGILT 107
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
++SVA + H F + + R+ LA+ +TY+R +AL+ L+K
Sbjct: 108 RITQR------SVSVAFDESH---DFHLTLDRE-NLYRLLKLANDVTYKRLKKALVALKK 157
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
+ P+ + LFG + + L ++ T D SQK+A++ L+
Sbjct: 158 ---YHSGPASPLIEVLFGGSAPSPAQKISPLTFYN---------TTLDPSQKEAVSFALS 205
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+K L II GPPGTGKT + E+I + V+QG +VL AP+N AVDN+VE+L+ I+R
Sbjct: 206 QKE-LAIIHGPPGTGKTTTVVEVILQTVKQGLKVLCCAPSNIAVDNLVERLARCKQRILR 264
Query: 309 VGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAA 361
+G+PAR+ ++ L ++ +S A VA D+RKD+ Q +D +
Sbjct: 265 LGHPARLLESIQQHCLDAVLSRSDSAQIVA-------DIRKDIDQVFVKNKKTQDKKDKS 317
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV----- 413
R +K L K LK++E+ + E L+ A VVLATNTGA AD ++ L FD+V
Sbjct: 318 NFRNEIKLLRKELKEREEAAMVESLTEASVVLATNTGASADGPLKLLPESYFDVVVIDEC 377
Query: 414 --------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459
++CILAGD QL P +S KA + G+ +SL+ER A H +
Sbjct: 378 GQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAAQEGLSLSLMERLAEEHGDRVVRT 437
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPY 519
LT QYRM+ AI WAS+ MY G L + +V HLL D P V T T PLLL+DT
Sbjct: 438 LTVQYRMHQAIMRWASEAMYRGQLTAHPSVVGHLLRDLPGVAATEETGIPLLLVDT---- 493
Query: 520 GSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
S L E D G N GE +V H+ +L+ AGV IAV +PY QV LR+
Sbjct: 494 ASCGLFELEEEDEQSRG---NPGEVRLVSMHIQALVDAGVQAGDIAVITPYNLQVDLLRQ 550
Query: 580 RL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L PE +E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA +H
Sbjct: 551 SLGHKHPE---LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEERRINVAVTRARRH 607
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVK-------------HAEPGSFGGSGLGMDPM 685
VAV+CDS T+ + FL L+ + G V+ +A GS G S + P
Sbjct: 608 VAVICDSRTVNTHPFLKTLVDYFTKHGEVRTAFEYLDDIVPANYAHEGSQGHSQAAVKPQ 667
Query: 686 LPS 688
P+
Sbjct: 668 GPT 670
>gi|225441756|ref|XP_002277619.1| PREDICTED: DNA-binding protein SMUBP-2-like [Vitis vinifera]
Length = 647
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 221/628 (35%), Positives = 333/628 (53%), Gaps = 74/628 (11%)
Query: 66 QELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATS 125
Q+ TI NL V TGL G L+ F+ LP D+V ++ ++ +
Sbjct: 50 QKRGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVLPAHKFGTHDVVVLK--PNKADLGSP 107
Query: 126 CI-QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALM 184
+ QG V+ L + +I+VA + + S L R++ +A+ +TY R +AL+
Sbjct: 108 ALGQGVVYRLKD--SSITVAFDDIPEEGLNSPL--------RLEKVANEVTYRRMKDALV 157
Query: 185 LLQKNGLHKRNPSIAAVVTLFGD------KEDVTWLEENDLADWSEVKLDGIMGKTFDDS 238
L K G+HK P+ + LFG+ K+DVT+ N D S
Sbjct: 158 QLSK-GVHK-GPTADLIPVLFGERPPTVSKKDVTFTPFNS---------------NLDRS 200
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
QK AI+ L+ K + ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+
Sbjct: 201 QKDAISKALSSKN-VFLLHGPPGTGKTTTVVEIILQEVKRGAKILACAASNIAVDNIVER 259
Query: 299 LSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
L + +VR+G+PAR+ P V +L ++++ + ++ L L + KD
Sbjct: 260 LVPYRVKLVRLGHPARLLPQVLESALDAQVLRGDNTGLANDIRKEMKALNGKLLKT-KDK 318
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFDLV-- 413
+ IR+ LK L K +K+++ V +V+ +A VVL T TGA R+L+ +FDLV
Sbjct: 319 NTRRDIRKELKTLSKEERKRQQLAVTDVIKNANVVLTTLTGAVS---RKLENISFDLVII 375
Query: 414 -----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
G RCILAGD QL P I S +A + G+G +L ER A L+ +
Sbjct: 376 DEAAQALEIACWIALLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADLYGDEV 435
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR 516
+ LT QYRM++ I +W+SKE+Y + + +VA+H+L D VK + T+ LLL+DT
Sbjct: 436 MSMLTVQYRMHELIMNWSSKELYNSKITAHPSVAAHMLSDLEDVKKSSSTESTLLLIDT- 494
Query: 517 LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC+ S NEGEAE+ + H L+ +GV S I + +PY AQV
Sbjct: 495 -------AGCDMEEKKDEEDSTMNEGEAEVAISHAKRLVDSGVQASDIGIITPYAAQVVL 547
Query: 577 LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
L+ ++ + +E++T+D FQGRE +A+IISM RSN VGFL D RRMNVA+TRA
Sbjct: 548 LKMMKNNDDKLKDMEISTVDGFQGREKEAIIISMARSNPKKEVGFLSDRRRMNVAVTRAR 607
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYF 664
+ +VCD+ T+ + FL RL I YF
Sbjct: 608 RQCCLVCDTETVTSDKFLKRL---IEYF 632
>gi|301614127|ref|XP_002936547.1| PREDICTED: DNA-binding protein SMUBP-2-like, partial [Xenopus
(Silurana) tropicalis]
Length = 912
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 209/538 (38%), Positives = 301/538 (55%), Gaps = 66/538 (12%)
Query: 166 RIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV 225
R+ LA+ +TY+R AL L G ++ + + + LF E +++ +
Sbjct: 62 RLLKLANDVTYKRIKRALTAL---GQYRSGQASSLIDVLFCSSEPSHSVQKRQVE----- 113
Query: 226 KLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285
+ DDSQK+A++ LN+ R + +I GPPGTGKT + EII +AV++G +VL
Sbjct: 114 ----FFNLSLDDSQKEAVSFSLNQ-REVAVIHGPPGTGKTTTVVEIILQAVKEGLKVLCC 168
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKS 344
AP+N AVDN+VE+LS I+R+G+PAR+ ++ SL ++ +S A VA
Sbjct: 169 APSNVAVDNLVERLSVFKEKILRLGHPARLLESLQHHSLDAVLARSDNAQIVA------- 221
Query: 345 DLRKDLRQC------LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
D+R+D+ Q L +G R +K L K LK++E+ + E L A V+LATNTG
Sbjct: 222 DIRRDIDQTFAKMKKLHGKQEKSGYRTEIKALRKELKEREEAAMVETLKRANVILATNTG 281
Query: 399 AA-DPLIRRL--DTFDLV-------------------GKRCILAGDQCQLAPVILSRKAL 436
A+ D ++ L D FDLV K+CILAGD QL P I+S KA
Sbjct: 282 ASLDGPLKLLPEDYFDLVVIDECAQALEASCWISLLQAKKCILAGDHKQLPPTIISHKAA 341
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
G+ +SL+ER + + LT QYRM+ +I WAS+ +YGG L + S+V+ HLL D
Sbjct: 342 ANGLSLSLMERVTEKYGEKVVKMLTVQYRMHQSIMQWASEALYGGRLTAHSSVSQHLLKD 401
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
P V T T PLLL+DT G E +++ S N GE ++V H+ +L
Sbjct: 402 LPGVSVTEETSIPLLLIDT------AHCGLFE-MEVEDEQSKGNPGEVQLVDLHIQALTK 454
Query: 557 AGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVR 612
AGV P IAV +PY QV Q LR+R DL E+ ++D FQGRE +AV++S VR
Sbjct: 455 AGVKPQDIAVIAPYNLQVDMLRQCLRQRYPDL------EIKSVDGFQGREKEAVVLSFVR 508
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
SN+ G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 509 SNSKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVGNHQFLKDLITYFSEHGEVRTA 566
>gi|297739693|emb|CBI29875.3| unnamed protein product [Vitis vinifera]
Length = 647
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 221/628 (35%), Positives = 333/628 (53%), Gaps = 74/628 (11%)
Query: 66 QELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATS 125
Q+ TI NL V TGL G L+ F+ LP D+V ++ ++ +
Sbjct: 50 QKRGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVLPAHKFGTHDVVVLK--PNKADLGSP 107
Query: 126 CI-QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALM 184
+ QG V+ L + +I+VA + + S L R++ +A+ +TY R +AL+
Sbjct: 108 ALGQGVVYRLKD--SSITVAFDDIPEEGLNSPL--------RLEKVANEVTYRRMKDALV 157
Query: 185 LLQKNGLHKRNPSIAAVVTLFGD------KEDVTWLEENDLADWSEVKLDGIMGKTFDDS 238
L K G+HK P+ + LFG+ K+DVT+ N D S
Sbjct: 158 QLSK-GVHK-GPTADLIPVLFGERPPTVSKKDVTFTPFNS---------------NLDRS 200
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
QK AI+ L+ K + ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+
Sbjct: 201 QKDAISKALSSKN-VFLLHGPPGTGKTTTVVEIILQEVKRGAKILACAASNIAVDNIVER 259
Query: 299 LSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
L + +VR+G+PAR+ P V +L ++++ + ++ L L + KD
Sbjct: 260 LVPYRVKLVRLGHPARLLPQVLESALDAQVLRGDNTGLANDIRKEMKALNGKLLKT-KDK 318
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFDLV-- 413
+ IR+ LK L K +K+++ V +V+ +A VVL T TGA R+L+ +FDLV
Sbjct: 319 NTRRDIRKELKTLSKEERKRQQLAVTDVIKNANVVLTTLTGAVS---RKLENISFDLVII 375
Query: 414 -----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
G RCILAGD QL P I S +A + G+G +L ER A L+ +
Sbjct: 376 DEAAQALEIACWIALLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADLYGDEV 435
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR 516
+ LT QYRM++ I +W+SKE+Y + + +VA+H+L D VK + T+ LLL+DT
Sbjct: 436 MSMLTVQYRMHELIMNWSSKELYNSKITAHPSVAAHMLSDLEDVKKSSSTESTLLLIDT- 494
Query: 517 LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC+ S NEGEAE+ + H L+ +GV S I + +PY AQV
Sbjct: 495 -------AGCDMEEKKDEEDSTMNEGEAEVAISHAKRLVDSGVQASDIGIITPYAAQVVL 547
Query: 577 LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
L+ ++ + +E++T+D FQGRE +A+IISM RSN VGFL D RRMNVA+TRA
Sbjct: 548 LKMMKNNDDKLKDMEISTVDGFQGREKEAIIISMARSNPKKEVGFLSDRRRMNVAVTRAR 607
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYF 664
+ +VCD+ T+ + FL RL I YF
Sbjct: 608 RQCCLVCDTETVTSDKFLKRL---IEYF 632
>gi|356570496|ref|XP_003553421.1| PREDICTED: DNA-binding protein SMUBP-2-like [Glycine max]
Length = 648
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 225/637 (35%), Positives = 340/637 (53%), Gaps = 87/637 (13%)
Query: 66 QELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSR-GACAT 124
Q+ TI NL V TGL G L+ F+ LP D+V +++ + G+ A
Sbjct: 51 QKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPAL 110
Query: 125 SCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALM 184
QG V+ L + +I+VA + D S L R++ +A+ +TY R +AL+
Sbjct: 111 G--QGVVYRLKD--SSITVAFDDIPEDGLNSPL--------RLEKVANEVTYRRMKDALI 158
Query: 185 LLQKNGLHKRNPSIAAVVTLFGD------KEDVTWLEENDLADWSEVKLDGIMGKTFDDS 238
L K G+HK P+ + LFG+ K+DV++ N K D S
Sbjct: 159 QLSK-GVHK-GPASDLIPVLFGERPPAVSKKDVSFTPFN---------------KNLDHS 201
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
QK+A++ L+ K + ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+
Sbjct: 202 QKEAVSKALSSKN-VFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVER 260
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC----- 353
L + +VR+G+PAR+ P V +L V S +A +D+RK+++
Sbjct: 261 LVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSGLA------NDIRKEMKALNGKLL 314
Query: 354 -LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT--F 410
KD + I++ L+ L K +K+++ V +VL SA V+L T GA ++LD+ F
Sbjct: 315 KTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGA---FSKKLDSTSF 371
Query: 411 DLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
DLV G RC+LAGD QL P I S +A + G+G +L ER A +
Sbjct: 372 DLVIIDEAAQALEIACWIPLLKGSRCVLAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEV 431
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
+ + + LT QYRM++ I W+SKE+Y + + +V +H+L D VK T T+ LL
Sbjct: 432 YGDEITSMLTVQYRMHELIMDWSSKELYNSKIKAHPSVTAHMLYDLEGVKRTTSTEPTLL 491
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
L+DT GC+ S +NEGEAE+ V H L+ +GV PS I + +PY
Sbjct: 492 LIDT--------AGCDMEEKKDEEDSTFNEGEAEVTVAHAKRLVQSGVIPSDIGIITPYA 543
Query: 572 AQV---QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
AQV + L+ + D L + VE++T+D FQGRE +A+IISMVRSN+ VGFL D RRM
Sbjct: 544 AQVVLLKMLKNKEDRLKD---VEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRM 600
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NVA+TR+ + +V D+ T+ + FL RL+ + G
Sbjct: 601 NVAVTRSRRQCCLVSDTETVSGDGFLKRLIEYFEEHG 637
>gi|215539488|gb|AAI71648.1| Ighmbp2l protein [Danio rerio]
Length = 993
Score = 315 bits (806), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 221/633 (34%), Positives = 341/633 (53%), Gaps = 73/633 (11%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L + S TG+ G LV+F + G LP T PGD++ + + + A T
Sbjct: 44 LMKLQIGSQHTGMYGRLLVIFEPRKCIGLSVLPSNTFGPGDIIGLYQAEGQ-ALPTQLGS 102
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSK--LFGKSVRIDRIQGLADTLTYERNCEALMLL 186
G V + +++VA + + L+ + LA+ +TY R AL L
Sbjct: 103 GVVTRATQ--ASLTVAFDDTQDGTNLDRDGLYN-------LMKLANDVTYRRLSSALKSL 153
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
NG + P+ + LFG E + L +++ KLD DSQK+A++
Sbjct: 154 --NG-YSNGPASHLISVLFGYSEPGILSHQYAL-EFNNTKLD--------DSQKEAVSFA 201
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
+++K + II GPPGTGKT + E+I +AV+Q ++VL AP+N AVDN+VE+L+ + +
Sbjct: 202 ISQK-DVAIIHGPPGTGKTTTVVEVILQAVKQQQKVLCCAPSNVAVDNLVERLAKNKVKV 260
Query: 307 VRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
+R+G+PAR+ ++ SL ++ + + SD+RKD+ + +D
Sbjct: 261 LRLGHPARLLESIQKHSLDAVLAHSDNTNII------SDIRKDMDKAFNEIKKARDKGQR 314
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRL--DTFDLV--- 413
+ +R+ + +L + L+ +E+ ++ ++L A V+LATNTGA+D PL + L D FDLV
Sbjct: 315 SNLRREIGELRRELRTREETSISQILKRADVILATNTGASDDGPL-KHLPNDHFDLVVID 373
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P I S+ A G+ VSL+ER + +
Sbjct: 374 ECAQALESSCWIALLKARKCILAGDYKQLPPTIKSQSAASKGLSVSLMERLIKKYGDSVV 433
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LTTQYRMN AI WAS++MY G LI+ +V HLL D V T+ PLLL+DT
Sbjct: 434 RMLTTQYRMNSAIMQWASEQMYQGKLIAHPSVEKHLLRDLAGVADVEETRIPLLLVDT-- 491
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
L E+ D G N+GE +IV H+ +L AGV IA+ +PY QV L
Sbjct: 492 --AGCGLNEMENTDEQSKG---NQGEVDIVALHIKALTEAGVQVKDIAIIAPYNLQVDLL 546
Query: 578 RERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
R++L + A +E+ ++D FQGRE +AV++S+VRSN G VGFL + RR+NVA+TRA +
Sbjct: 547 RQKLSH--KYAELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTRARR 604
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+ VVCDS T+ ++ FL L+ ++ G ++ A
Sbjct: 605 QLVVVCDSQTVRNHDFLKSLVDYMSKHGELRTA 637
>gi|326505658|dbj|BAJ95500.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 650
Score = 315 bits (806), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 227/673 (33%), Positives = 343/673 (50%), Gaps = 75/673 (11%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L EF M+ L+ +E+ AE+ E A E S P
Sbjct: 22 LQEFVSSMAPLIDLEKAAEISAESE---ASSKRKERRGSVMP------------------ 60
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL TGL G L+ F+ LPP D+V ++ + A + + QG V+
Sbjct: 61 -NLKCTDAQTGLMGKTLLEFQPNKGDVLPPHKFGTHDVVALK-PNKADAGSPALGQGVVY 118
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
L + +I+V + D S L R++ LA+ +TY R +AL+ L K G+
Sbjct: 119 RLKD--SSITVVFDDIPEDGLNSPL--------RLEKLANEVTYRRMKDALIQLSK-GIQ 167
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
PS V LFG+ + + D +S K DDSQK AI+ L + R
Sbjct: 168 A-GPSANLVPVLFGEN---SPMRSKDAVKFSP------FNKNLDDSQKDAISKAL-RSRD 216
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+LS +VR+G+P
Sbjct: 217 VFLLHGPPGTGKTTTIIEIILQEVKRGAKILACAASNIAVDNIVERLSQYRTKLVRLGHP 276
Query: 313 ARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLG 371
AR+ P V +L +++++ +S + ++ L L + KD + IR+ LK L
Sbjct: 277 ARLLPQVLDSALDAQVLRADNSSLAGDIRKEMKVLNSKLLKA-KDRNTKRDIRKELKTLA 335
Query: 372 KTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------------ 413
K +K+++ V +V+ +A VVL+T TGA+ I + +FDLV
Sbjct: 336 KEERKRQQLAVADVIKNADVVLSTLTGASSKKIAGI-SFDLVIIDEAAQALEVACWIALL 394
Query: 414 -GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
G RC+LAGD QL P I S +A + G+G +L ER + + + LT QYRM++ I +
Sbjct: 395 KGARCVLAGDHLQLPPTIQSVEAEKKGMGKTLFERLTEGYGDEITSMLTVQYRMHELIMN 454
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL 532
W+SKE+Y + + S+VA H+L D V + T+ ++L+DT GC+
Sbjct: 455 WSSKELYSNKIKAHSSVAGHMLYDLEGVNKSSSTEPTIILVDT--------TGCDMEEVK 506
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEV 592
S NEGEA + + H L+ +GV S I + +PY AQV L+ + + +E+
Sbjct: 507 DEEESTMNEGEAAVSIAHAKLLVESGVRASDIGIITPYSAQVTCLKMMRNKDAKLKDLEI 566
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+T+D FQGRE +A+IISMVRSN VGFL D RRMNVA+TRA + VVCD+ T+ +
Sbjct: 567 STVDGFQGREKEAIIISMVRSNQKKEVGFLSDHRRMNVAVTRARRQCCVVCDAETVSSDR 626
Query: 653 FLARLLRHIRYFG 665
FL RL+ + G
Sbjct: 627 FLKRLVEYFEENG 639
>gi|242038955|ref|XP_002466872.1| hypothetical protein SORBIDRAFT_01g015520 [Sorghum bicolor]
gi|241920726|gb|EER93870.1| hypothetical protein SORBIDRAFT_01g015520 [Sorghum bicolor]
Length = 650
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 228/673 (33%), Positives = 347/673 (51%), Gaps = 75/673 (11%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L EF M+ L+ +E+ AE+ E+ S+K +E + C I
Sbjct: 22 LQEFVSSMAPLIDLEKAAEI------------TAESETSAKSLE---------RRGC-VI 59
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL TGL G L+ F+ LP D+V ++ + A + S QG V+
Sbjct: 60 ANLKCTDAQTGLMGKTLLEFQPNKGDVLPAHKFGTHDVVALKP-NKADAGSASLGQGVVY 118
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
L + +I+VA + D S L R++ LA+ +TY R +AL+ L K
Sbjct: 119 RLKD--SSITVAFDDIPEDGLNSPL--------RLEKLANEVTYRRMKDALIELSKAV-- 166
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
+ P V LFG+K + D +S K DDSQK+AI+ L R
Sbjct: 167 QTGPCANLVPVLFGEK---APMRSKDTMKFSP------FNKNLDDSQKEAISKALGS-RD 216
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+L+ +VR+G+P
Sbjct: 217 VFLLHGPPGTGKTTTIIEIILQEVKRGSKILACAASNIAVDNIVERLARYRTKLVRLGHP 276
Query: 313 ARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLG 371
AR+ P V +L +++++ +S + ++ L L + KD + IR+ L+ L
Sbjct: 277 ARLLPQVLDSALDAQVLRADNSSLAGDIRKEMKVLNSKLLKA-KDRNTKRDIRKELRALA 335
Query: 372 KTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------------ 413
K +K+++ V +VL +A VVL T TGA+ + + TFDLV
Sbjct: 336 KEERKRQQLAVTDVLKNADVVLTTLTGASSKKLNGI-TFDLVVIDEAAQALEVACWIALL 394
Query: 414 -GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
G RCILAGD QL P I S +A + G+G +L ER + + + LT QYRM++ I S
Sbjct: 395 KGPRCILAGDHLQLPPTIQSVEAEKKGMGKTLFERLTEAYGEEITSMLTVQYRMHEHIMS 454
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL 532
W+SKE+Y + + S+VA H+L D V + T+ ++L+DT GC+
Sbjct: 455 WSSKELYNNKIKAHSSVAGHMLYDLEEVTRSSSTEPTIILIDT--------TGCDMEEVK 506
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEV 592
S NEGEA + + H L+ +GV+ S I + +PY AQV L+ + + +E+
Sbjct: 507 DEEESTMNEGEAAVSIAHAKLLVESGVNASDIGIITPYSAQVTCLKMMRNKDAKLKDLEI 566
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TRA + +VCD T+ ++
Sbjct: 567 STVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCLVCDVETVSNDR 626
Query: 653 FLARLLRHIRYFG 665
FL RL+ + G
Sbjct: 627 FLKRLVEYFEENG 639
>gi|357509763|ref|XP_003625170.1| DNA-binding protein SMUBP-2 [Medicago truncatula]
gi|355500185|gb|AES81388.1| DNA-binding protein SMUBP-2 [Medicago truncatula]
Length = 645
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 230/685 (33%), Positives = 357/685 (52%), Gaps = 85/685 (12%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPT-PDENSDSSKPIEFLVSHGRAPQELCDT 71
LD+F + LL +E+DAE+ +++ T N D++ Q+ T
Sbjct: 13 LDQFISITTPLLDLEKDAEIS------SSIATGASRNLDTA-------------QKRGST 53
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSR-GACATSCIQGF 130
I NL V TGL G L+ + LP D+V +++ + G+ A QG
Sbjct: 54 ILNLKCVDVQTGLMGKSLIELQSTKADVLPAHKFGTHDVVVLKLNKADLGSPALG--QGV 111
Query: 131 VHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNG 190
V+ L + +I+VA + D S L R++ +A+ +TY R +AL+ L K G
Sbjct: 112 VYRLKD--SSITVAFDDIPEDGLNSPL--------RLEKVANEVTYHRMKDALIQLSK-G 160
Query: 191 LHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKK 250
+HK P+ + LFG+++ + + D+ S + K D SQK AI+ L+ K
Sbjct: 161 VHK-GPASDLIPVLFGERQPT--VSKKDVVFTS-------INKNLDYSQKDAISKALSSK 210
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
+ ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+L + +VR+G
Sbjct: 211 N-VFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRIG 269
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC------LKDDSLAAGIR 364
+PAR+ P V +L V S +A +D+RK+++ K+ + I+
Sbjct: 270 HPARLLPQVVDSALDAQVLRGDNSGLA------NDIRKEMKVLNGKLLKTKEKNTRREIQ 323
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ L+ L + +K+++ V +V+ ++ V+L T GA+ + +FDLV
Sbjct: 324 KELRTLSREERKRQQLAVTDVIKTSDVILTTLIGASSKKLGNT-SFDLVIIDEAAQALEV 382
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
G RCILAGD QL P I S +A + G+G +L ER A L+ + + LT QYR
Sbjct: 383 ACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYR 442
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ I W+SKE+Y + + + VASH+L D VK T T+ LLL+DT G
Sbjct: 443 MHQLIMDWSSKELYNSKVKAHACVASHMLYDLEGVKKTSSTEPTLLLIDT--------AG 494
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
C+ S NEGE+E+ + H L+ +GV PS I + +PY AQV L+ +
Sbjct: 495 CDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEN 554
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
+E++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TRA + +VCD+
Sbjct: 555 SLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDT 614
Query: 646 STICHNTFLARLLRHIRYFGRVKHA 670
T+ + FL RL+ + G + A
Sbjct: 615 ETVSSDGFLKRLIEYFEEHGEYQSA 639
>gi|449503996|ref|XP_004174557.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2
[Taeniopygia guttata]
Length = 1002
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 241/634 (38%), Positives = 332/634 (52%), Gaps = 76/634 (11%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L V S TGL G LV F + + + LP + PGD+V + +S G C
Sbjct: 55 LFKLQVSSQRTGLYGRLLVTFQPRKCDSDTELPSNSFGPGDIVGL--YESAGQGDPLCT- 111
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V + ++VALE +P +L R+ LA+ +TY R AL L++
Sbjct: 112 GVVTRVTPK--AVTVALE----EPRDGELAVDHEHSFRLLKLANDVTYNRLKRALTALKQ 165
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
++ P+ + LF + E L + D+SQ++A++ L
Sbjct: 166 ---YRGGPASDLIDVLFFASAPRAFPETKPLE---------FFNASLDESQREAVSFSL- 212
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+R L II GPPGTGKT L EII +AVQQG +VL AP+N AVDN+VE+L+ ++R
Sbjct: 213 AQRELAIIHGPPGTGKTTTLVEIILQAVQQGLKVLCCAPSNVAVDNLVERLAGCRARLLR 272
Query: 309 VGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAA 361
+G+PAR+ + SL ++ + A VA D+R+D+ Q +D +
Sbjct: 273 LGHPARLLQPIQQHSLDAVLARGDCARLVA-------DIRRDIDQAWVRGPAPQDKGERS 325
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRLDT-FDLV----- 413
+K L K LK++E+ + LS A VVLATNTGA+ PL +T FDLV
Sbjct: 326 HFLGEIKTLRKELKEREEAAMTAALSQASVVLATNTGASSDGPLKLLPETHFDLVVIDEC 385
Query: 414 --------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459
+CILAGD QL P I+S +A G+ +SL+ER A H G A +
Sbjct: 386 AQALEASCWIPLLKAPKCILAGDHKQLPPTIISHRAAAEGLSLSLMERLAG-HYGERAVR 444
Query: 460 -LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ I WAS E+YGG L + +VA HLL D P V T T PLLL+DT
Sbjct: 445 MLTVQYRMHRHIMEWASSELYGGRLSAHPSVAQHLLRDLPGVSDTEETSIPLLLIDT--- 501
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L++ S N GE ++V H+ +L+ AGV IAV +PY QV L
Sbjct: 502 -----AGCGLFELEVEDEQSKGNPGEVQLVGMHIQALVDAGVKAKDIAVVAPYNLQVDML 556
Query: 578 RERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 557 RQHLCHRHPE---LEIRSVDGFQGREKEAVILSFVRSNRKGEVGFLAEERRINVAVTRAR 613
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+ VAVVCDS T+ FL RLL H+ G V+ A
Sbjct: 614 RQVAVVCDSHTVGSRPFLRRLLDHLAQHGLVRSA 647
>gi|426252598|ref|XP_004019993.1| PREDICTED: DNA-binding protein SMUBP-2 [Ovis aries]
Length = 874
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 238/632 (37%), Positives = 335/632 (53%), Gaps = 75/632 (11%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L V S TGL G L+ R LP + + GD+V + D G AT +
Sbjct: 36 LLKLQVSSQRTGLYGRLLITLEPRRCVSAAVLPSNSFTSGDIVGL--YDESGQLATGILT 93
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
++VA + H S+L R+ LA+ +TY+R +AL+ L+K
Sbjct: 94 RITQK------AVTVAFDESHD----SQLSLDQEHSYRLLKLANDVTYKRLKKALISLKK 143
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
+ P+ + + LFG D + SE+ D SQ++A+ L+
Sbjct: 144 ---YHSGPASSLIEVLFGTA---------DPSPPSEMPPLTFCNPALDASQQEAVLFALS 191
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+K L II GPPGTGKT + EII +AV++G +VL AP+N AVDN+VE+L+ I+R
Sbjct: 192 QKE-LAIIHGPPGTGKTTTVVEIILQAVKRGSKVLCCAPSNVAVDNLVERLAQWKQRILR 250
Query: 309 VGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAA 361
+G+PAR+ ++ SL ++ +S A VA D+R+D+ Q +D +
Sbjct: 251 LGHPARLLDSIQQHSLDAVLARSDGARIVA-------DIRRDIDQAWAKNRKTQDKREKS 303
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRLDT--FDLV----- 413
R +K L K LK +E+ + E L++A V+LATNTGA AD ++ L FD+V
Sbjct: 304 NFRDEIKLLRKELKDREEAAMLESLAAASVILATNTGASADGPLKLLPDGHFDVVVIDEC 363
Query: 414 --------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459
++CILAGD QL P I+S KA G+ +SL+ER A H
Sbjct: 364 AQALEASCWIPLLKARKCILAGDHKQLPPTIVSHKAALAGLSLSLMERLAERHGAGAVRM 423
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPY 519
LT QYRM+ AIA WAS+ +Y G L + +VA HLL D P V T T PLLL+DT
Sbjct: 424 LTVQYRMHQAIARWASEALYHGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT---A 480
Query: 520 GSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
G L EE D G N GE +V HV +L+ AGV + IAV +PY QV LR+
Sbjct: 481 GCGLLELEED-DEQSKG---NPGEVRLVGLHVQALVDAGVRAADIAVITPYNLQVDLLRQ 536
Query: 580 RLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA +H
Sbjct: 537 NLAHRHPE---LEIRSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRH 593
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
VAVVCDS T+ ++ FL L+ ++ G V+ A
Sbjct: 594 VAVVCDSRTVSNHAFLKTLVDYLTEHGEVRTA 625
>gi|147846685|emb|CAN80641.1| hypothetical protein VITISV_016912 [Vitis vinifera]
Length = 649
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 220/628 (35%), Positives = 332/628 (52%), Gaps = 74/628 (11%)
Query: 66 QELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATS 125
Q+ TI NL V TGL G L+ F+ LP D+V ++ ++ +
Sbjct: 52 QKRGSTILNLKCVDAQTGLMGKTLLEFQSTKGDVLPAHKFGTHDVVVLK--PNKADLGSP 109
Query: 126 CI-QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALM 184
+ QG V+ L + +I+VA + + S L R++ +A+ +TY R +AL+
Sbjct: 110 ALGQGVVYRLKD--SSITVAFDDIPEEGLNSPL--------RLEKVANEVTYRRMKDALV 159
Query: 185 LLQKNGLHKRNPSIAAVVTLFGD------KEDVTWLEENDLADWSEVKLDGIMGKTFDDS 238
L K G+HK P+ + LFG+ K+DVT+ N D S
Sbjct: 160 QLSK-GVHK-GPAADLIPVLFGERPPTVSKKDVTFTPFNS---------------NLDRS 202
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
QK I+ L+ K + ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+
Sbjct: 203 QKDXISKALSSKN-VFLLHGPPGTGKTTTVVEIILQEVKRGAKILACAASNIAVDNIVER 261
Query: 299 LSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
L + +VR+G+PAR+ P V +L ++++ + ++ L L + KD
Sbjct: 262 LVPYRVKLVRLGHPARLLPQVLESALDAQVLRGDNTGLANDIRKEMKALNGKLLKT-KDK 320
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFDLV-- 413
+ IR+ LK L K +K+++ V +V+ +A VVL T TGA R+L+ +FDLV
Sbjct: 321 NTRRDIRKELKTLSKEERKRQQLAVTDVIKNANVVLTTLTGAVS---RKLENISFDLVII 377
Query: 414 -----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
G RCILAGD QL P I S +A + G+G +L ER A L+ +
Sbjct: 378 DEAAQALEIACWIALLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADLYGDEV 437
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR 516
+ LT QYRM++ I +W+SKE+Y + + +VA+H+L D VK + T+ LLL+DT
Sbjct: 438 MSMLTVQYRMHELIMNWSSKELYNSKITAHPSVAAHMLSDLEDVKKSSSTESTLLLIDT- 496
Query: 517 LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC+ S NEGEAE+ + H L+ +GV S I + +PY AQV
Sbjct: 497 -------AGCDMEEKKDEEDSTMNEGEAEVAISHAKRLVDSGVQASDIGIITPYAAQVVL 549
Query: 577 LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
L+ ++ + +E++T+D FQGRE +A+IISM RSN VGFL D RRMNVA+TRA
Sbjct: 550 LKMMKNNDDKLKDMEISTVDGFQGREKEAIIISMARSNPKKEVGFLSDRRRMNVAVTRAR 609
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYF 664
+ +VCD+ T+ + FL RL I YF
Sbjct: 610 RQCCLVCDTETVTSDKFLKRL---IEYF 634
>gi|224029893|gb|ACN34022.1| unknown [Zea mays]
gi|414871609|tpg|DAA50166.1| TPA: hypothetical protein ZEAMMB73_963119 [Zea mays]
Length = 646
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 229/673 (34%), Positives = 345/673 (51%), Gaps = 75/673 (11%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L EF M L+ +E+ AE+ E+ S+K +E + C I
Sbjct: 18 LQEFVSCMQPLIDLEKAAEISA------------ESETSAKSLE---------RRGC-VI 55
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL TGL G L+ F+ LP D+V ++ + A + S QG V+
Sbjct: 56 ANLKCTDAQTGLMGKTLLEFQPNKGDVLPSHKFGTHDVVALKP-NKADAGSASLGQGVVY 114
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
L + +I+VA + D S L R++ LA+ +TY R +AL+ L K
Sbjct: 115 RLKD--SSITVAFDDIPEDGLNSPL--------RLEKLANEVTYRRMKDALIELSKAV-- 162
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
+ P V LFG+K + D +S K DDSQK+AI+ L R
Sbjct: 163 QTGPCANLVPVLFGEK---APMRSKDAMKFSP------FNKNLDDSQKEAISKALGS-RD 212
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ ++ GPPGTGKT + EII + V++G ++L A +N AVDN+VE+L+ +VR+G+P
Sbjct: 213 VFLLHGPPGTGKTTTIIEIILQEVKRGSKILACAASNIAVDNIVERLARYRTKLVRLGHP 272
Query: 313 ARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLG 371
AR+ P V +L +++++ +S + ++ L L + KD + IR+ LK L
Sbjct: 273 ARLLPQVLDSALDAQVLRADNSSLAGDIRKEMKVLNSKLLKA-KDRNTKRDIRKELKTLA 331
Query: 372 KTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------------ 413
K +K+++ V +VL +A VVL T TGA+ + + TFDLV
Sbjct: 332 KEERKRQQLAVTDVLKNADVVLTTLTGASSKKLNGI-TFDLVVIDEAAQALEVACWIALL 390
Query: 414 -GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
G RCILAGD QL P I S +A + G+G +L ER + + + LT QYRM++ I S
Sbjct: 391 KGPRCILAGDHLQLPPTIQSVEAEKKGMGKTLFERLTEAYGEEITSMLTVQYRMHEHIMS 450
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL 532
W+SKE+Y + + S+VA H+L D V + T+ ++L+DT GC+
Sbjct: 451 WSSKELYNNKIKAHSSVAGHMLYDLEEVTRSSSTEPTIVLIDT--------TGCDMEEVK 502
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEV 592
S NEGEA + + H L+ +GV+ S I + +PY AQV L+ + + +E+
Sbjct: 503 DEEESTMNEGEAAVSIAHAKLLVESGVNASDIGIITPYAAQVTCLKMMRNKDAKLKDLEI 562
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TRA + +VCD T+ +
Sbjct: 563 STVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCLVCDVETVSSDR 622
Query: 653 FLARLLRHIRYFG 665
FL RL+ + G
Sbjct: 623 FLKRLVEYFEENG 635
>gi|255571556|ref|XP_002526724.1| DNA-binding protein smubp-2, putative [Ricinus communis]
gi|223533913|gb|EEF35638.1| DNA-binding protein smubp-2, putative [Ricinus communis]
Length = 644
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 238/696 (34%), Positives = 360/696 (51%), Gaps = 96/696 (13%)
Query: 3 LERVKTIQS-RLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSH 61
+E+ KT + L EF S LL +E++AE+ + +S +S+ ++
Sbjct: 1 MEKDKTKKKLSLQEFVSITSPLLDLEKEAEI-----------SASISSGTSRNLDNAQKR 49
Query: 62 GRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGA 121
G TI NL V TGL G L+ F+ LP S D+V ++ ++
Sbjct: 50 G-------STILNLKCVDAQTGLMGKTLLEFQSNKGDVLPSHRFSTHDVVVLK--PNKAD 100
Query: 122 CATSCI-QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
+ + QG V+ L + +I+VA + + S L R++ +A+ +TY R
Sbjct: 101 LGSPALGQGVVYRLKD--SSITVAFDDIPEEGLNSPL--------RLEKVANEVTYRRMR 150
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGD------KEDVTWLEENDLADWSEVKLDGIMGKT 234
EAL+ L K +R P+ V LFG+ K+ VT+ N
Sbjct: 151 EALIQLSKGV--QRGPAADLVPVLFGERQPTMSKKGVTFTPFNS---------------N 193
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
D SQK AI+ L+ K + ++ GPPGTGKT + EII + V++G ++L A +N AVDN
Sbjct: 194 LDHSQKDAISKALSSK-DVFLLHGPPGTGKTTTVVEIILQEVKRGAKILACAASNIAVDN 252
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+VE+L + +VR+G+PAR+ P V +L +++K +S + ++ L L +
Sbjct: 253 IVERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLKGDNSSLANDIRKEMKALNGKLLKT 312
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFD 411
KD S I++ L+ L K +K+++ V +V+ +A VVL T TGA L +LD +FD
Sbjct: 313 -KDKSTRRDIQKELRTLSKEERKRQQLAVTDVIKNADVVLTTLTGA---LSHKLDNTSFD 368
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
LV G RCILAGD QL P I S +A + G+G +L ER A L+
Sbjct: 369 LVIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLADLY 428
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
+ + LT QYRM++ I +W+SKE+Y + + ++A+H+L D VK + T+ LLL
Sbjct: 429 GDEVTSMLTVQYRMHELIMTWSSKELYNSKIKAHPSIAAHMLSDLEGVKRSSATEPTLLL 488
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
+D GC+ S NEGEA++ V H L+ GV S I + +PY A
Sbjct: 489 IDI--------AGCDMEEKKDEEESTLNEGEADVAVAHAKRLVENGVQASDIGIITPYAA 540
Query: 573 QV---QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
QV + LR D L + VE++T+D FQGRE +A+IISMVRSN+ VGFL D RRMN
Sbjct: 541 QVVLLKILRSNEDKLKD---VEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMN 597
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
VA+TRA + +VCD+ T+ + FL RL+ + G
Sbjct: 598 VAVTRARRQCCLVCDTETVTSDGFLKRLIEYFEEHG 633
>gi|224090282|ref|XP_002308965.1| predicted protein [Populus trichocarpa]
gi|222854941|gb|EEE92488.1| predicted protein [Populus trichocarpa]
Length = 647
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 220/631 (34%), Positives = 335/631 (53%), Gaps = 71/631 (11%)
Query: 64 APQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACA 123
+ Q+ TI NL V TGL G L+ F+ LP D+V ++ ++
Sbjct: 48 SAQKKGSTILNLKCVDAQTGLMGKTLLEFQSNKGDVLPAHKFGTHDVVVLK--PNKADLG 105
Query: 124 TSCI-QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEA 182
+ + QG V+ L + +I+VA + + S L R++ +A+ +TY R +A
Sbjct: 106 SPALGQGVVYRLKD--SSITVAFDDIPDEGLNSPL--------RLEKVANEVTYRRMKDA 155
Query: 183 LMLLQKNGLHKRNPSIAAVVTLFGD------KEDVTWLEENDLADWSEVKLDGIMGKTFD 236
L+ L K G+H R P+ + LFG+ K+DVT+ N D
Sbjct: 156 LIQLSK-GVH-RGPAADLIPVLFGERQPTMSKKDVTFTPINS---------------HLD 198
Query: 237 DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMV 296
SQK AI+ L+ K + ++ GPPGTGKT + EII + V++G ++L A +N AVDN+V
Sbjct: 199 HSQKDAISKALSSKN-VFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIV 257
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
E+L + +VR+G+PAR+ P V +L ++++ ++ + ++ L L + K
Sbjct: 258 ERLVPHRVKLVRLGHPARLLPQVLDSALDAQVLRGDNSALANDIRKEMKALNGKLLKT-K 316
Query: 356 DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT--FDLV 413
D S I++ L+ L K +K+++ V +V+ +A VVL T TGA +L+T FDLV
Sbjct: 317 DKSTRRDIQKELRTLSKEERKRQQLAVIDVIKNADVVLTTLTGA---FSHKLNTTSFDLV 373
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
G RCILAGD QL P I S +A + G+G +L ER L+
Sbjct: 374 IIDEAAQALEITCWLALLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLTDLYGD 433
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+ + LT QYRM++ I +W+SKE+Y + + +VA+H+L D VK + T+ LLL+D
Sbjct: 434 EVTSMLTVQYRMHELIMNWSSKELYNSKIKAHPSVAAHMLFDLEGVKRSSSTEPTLLLVD 493
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
GC+ S NEGEAE+ V H L+ +GV S I + +PY AQV
Sbjct: 494 I--------AGCDMEEKKDEEDSTMNEGEAEVAVAHAKRLVQSGVQASDIGIITPYAAQV 545
Query: 575 QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
LR ++ + +E++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TR
Sbjct: 546 VLLRILKNNDDKLKDMEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTR 605
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
A + +VCD+ T+ + FL RL+ H G
Sbjct: 606 ARRQCCLVCDTETVSGDGFLKRLIEHFEEHG 636
>gi|302800219|ref|XP_002981867.1| hypothetical protein SELMODRAFT_179218 [Selaginella moellendorffii]
gi|300150309|gb|EFJ16960.1| hypothetical protein SELMODRAFT_179218 [Selaginella moellendorffii]
Length = 643
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 230/673 (34%), Positives = 352/673 (52%), Gaps = 71/673 (10%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L+ F +M LL +E++AE+ + E + + PD L G A +
Sbjct: 13 LESFVSKMLPLLELEKEAEIAASTETI-GMTNPD----------VLQQRGSA-------L 54
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
L V GL G L+L + LP LS D+V ++ + G+ A S QG V+
Sbjct: 55 KGLKCVGVEAGLLGKSLLLLQPNSGELLPSHKLSTHDVVLLKP-NKGGSAAESLGQGVVY 113
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
+ + +I+VA++ + S L R++ +A+ +TY+R L+ L K
Sbjct: 114 RIKDK--SITVAMDDVPDEGVNSLL--------RLEKVANEVTYQRLKSTLLDLGKGV-- 161
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
R P+ V LFG+K ++ D+SQ KA+ + L+ +
Sbjct: 162 SRGPATDLVPVLFGEKPPSFSKTHATYEPYN---------TELDESQVKAVKMALSAQ-D 211
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
++++ GPPGTGKT + EII + V++G +VL A +N AVDNMVE+L+ + +VR+G+P
Sbjct: 212 VMLLHGPPGTGKTTAVVEIILQEVKRGLKVLACASSNIAVDNMVERLACHKVKVVRLGHP 271
Query: 313 ARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLG 371
AR+ P V +L +++K+ +S + ++ S L + + KD +R+ L+QL
Sbjct: 272 ARLLPQVLDCALDAQVLKTDNSSLAKDIRKEISVLNAKILKA-KDRKSRDELRRELRQLS 330
Query: 372 KTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------------ 413
K ++++++ V +V+ A VVL T TGA ++++D FD+V
Sbjct: 331 KEERQRQQKAVTDVIQGASVVLTTLTGAMSAQLQKVD-FDVVVLDEAAQALETACWIAIL 389
Query: 414 -GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
G+RC+LAGD QLAP +LS++A + G G +L ER A L+ T LT QYRM++ I
Sbjct: 390 KGRRCLLAGDHLQLAPTVLSKEAEKQGFGTTLFERLAGLYASQAMTMLTVQYRMHEHIMD 449
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL 532
W+S E+YGG + + VAS L + VK T T+ L+L+D GC+
Sbjct: 450 WSSHELYGGKIQAHELVASRKLFELDGVKKTPATEHTLVLIDI--------CGCDMEESK 501
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEV 592
T S +NEGEA I + H L+ +GV I + +PY AQV LR ++ VE+
Sbjct: 502 DETESSFNEGEARIAITHAQKLVESGVKAIDIGIVTPYAAQVNVLRRMRNEEQRLLEVEI 561
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+TID FQGRE +A+IISMVRSN VGFL D RRMNVA+TRA + V+CDS T+ +
Sbjct: 562 STIDGFQGREKEAMIISMVRSNDKKEVGFLSDKRRMNVAVTRAKRQCCVICDSDTVGKDP 621
Query: 653 FLARLLRHIRYFG 665
FL RLL + G
Sbjct: 622 FLKRLLDYFEKHG 634
>gi|120952590|ref|NP_001038365.1| DNA-binding protein SMUBP-2 [Danio rerio]
Length = 997
Score = 311 bits (798), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 218/633 (34%), Positives = 339/633 (53%), Gaps = 73/633 (11%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L + S TG+ G LV+F + G LP T PGD++ + + + A T
Sbjct: 44 LMKLQIGSQHTGMYGRLLVIFEPRKCIGLSVLPSNTFGPGDIIGLYQAEGQ-ALPTQLGS 102
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSK--LFGKSVRIDRIQGLADTLTYERNCEALMLL 186
G V + +++VA + + L+ + LA+ +TY R AL L
Sbjct: 103 GVVTRATQ--ASLTVAFDDTQDGTNLDRDGLYN-------LMKLANDVTYRRLSSALKSL 153
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
NG + P+ + LFG + + L+ ++ + DDSQK+A++
Sbjct: 154 --NG-YSNGPASHLISVLFG------YSQPGILSHLYALEFNNT---KLDDSQKEAVSFA 201
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
+++K + II GPPGTGKT + E+I +AV+Q ++VL AP+N AVDN+VE+L+ + +
Sbjct: 202 ISQK-DVAIIHGPPGTGKTTTVVEVILQAVKQQQKVLCCAPSNVAVDNLVERLAKNKVKV 260
Query: 307 VRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
+R+G+PAR+ ++ SL ++ + + SD+RKD+ + +D
Sbjct: 261 LRLGHPARLLESIQKHSLDAVLAHSDNTNII------SDIRKDMDKAFNEIKKARDKGQR 314
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRL--DTFDLV--- 413
+ +R+ + +L + L+ +E+ + ++L A V+LATNTGA+D PL + L D FDLV
Sbjct: 315 SNLRREIGELRRELRTREETAISQILKRADVILATNTGASDDGPL-KHLPNDHFDLVVID 373
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P I S+ A G+ VSL+ER + +
Sbjct: 374 ECAQALESSCWIALLKARKCILAGDYKQLPPTIKSQSAASKGLSVSLMERLIKKYGDSVV 433
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LTTQYRMN AI WAS++MY G LI+ +V HLL D V T+ PLLL+DT
Sbjct: 434 RMLTTQYRMNSAIMQWASEQMYQGKLIAHPSVEKHLLRDLAGVADVEETRIPLLLVDT-- 491
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
L E+ D G N+GE +IV H+ +L AGV IA+ +PY QV L
Sbjct: 492 --AGCGLNEMENTDEQSKG---NQGEVDIVALHIKALTEAGVQVKDIAIIAPYNLQVDLL 546
Query: 578 RERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
R++L + A +E+ ++D FQGRE +AV++S+VRSN G VGFL + RR+NVA+TRA +
Sbjct: 547 RQKLSH--KYAELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVTRARR 604
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+ VVCDS T+ ++ FL L+ ++ G ++ A
Sbjct: 605 QLVVVCDSQTVRNHDFLKSLVDYMSKHGELRTA 637
>gi|335281378|ref|XP_003122472.2| PREDICTED: DNA-binding protein SMUBP-2 [Sus scrofa]
Length = 987
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 256/692 (36%), Positives = 364/692 (52%), Gaps = 95/692 (13%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ER AE+E + + EN ++ L S G +C +
Sbjct: 6 VESFVIKQLDLLELERSAEVEERR-------SWQENVS----LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV F R LP + + GD+V + DS+ AT +
Sbjct: 48 LKLQVSSQRTGLYGRLLVTFEPRRCASAAVLPSNSFTSGDIVGLYDEDSQ--LATGVLTR 105
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
L ++VAL++ H D S +S R+ + LA+ +TY+R +AL LQK
Sbjct: 106 ITQKL------VTVALDASH-DFQLSLDRERSYRLLK---LANDVTYKRLKKALTTLQK- 154
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ A + LFG + + S++ D SQK+A+ L++
Sbjct: 155 --YHSGPASALIEVLFG---------ASAPSPASDIPPLTFYNTALDASQKEAVLFALSQ 203
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ IVR+
Sbjct: 204 KE-LAIIHGPPGTGKTTTVVEIILQAVKQGSKVLCCAPSNVAVDNLVERLARWKQRIVRL 262
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL ++ +S A VA D+R+D+ Q L +D +
Sbjct: 263 GHPARLLESIQQHSLDAVLARSDGARVVA-------DIRRDIDQVLGKTKKTQDKREKSH 315
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRLD-TFDLV------ 413
R +K L K LK++E+ + E L++A+VVLATN GA+ PL D FD+V
Sbjct: 316 FRDEIKLLRKELKEREEAAMLESLTAARVVLATNAGASSDGPLKLLPDGHFDVVVIDECA 375
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P I+S KA G+ +SL+ER + L
Sbjct: 376 QALEASCWVPLLKARKCILAGDHKQLPPTIISHKAALAGLALSLMERLVEERGAGVLRML 435
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AIA WAS+ +Y G L + ++VA HLL D P V T T PLLL+DT
Sbjct: 436 TVQYRMHQAIAQWASEALYHGRLTAHASVAGHLLRDLPGVAATEETGIPLLLVDT----- 490
Query: 521 SLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
GC L+ S N GE +V HV +L+ AGV +AV +PY QV LR+
Sbjct: 491 ---AGCGLFELEEEDEQSKGNPGEVRLVRLHVQALVDAGVPAGDVAVITPYNLQVDLLRQ 547
Query: 580 RLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA +H
Sbjct: 548 SLAQRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRH 604
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
VAVVCDS T+ ++ FL L+ + G V+ A
Sbjct: 605 VAVVCDSRTVSNHAFLKTLVAYFAEHGEVRTA 636
>gi|417405556|gb|JAA49487.1| Putative dna replication helicase [Desmodus rotundus]
Length = 1000
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 234/633 (36%), Positives = 338/633 (53%), Gaps = 77/633 (12%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L + S TGL G LV R LP ++LS GD+V + G AT +
Sbjct: 47 LLKLQLSSQRTGLYGQLLVTLEPRRCASAGVLPSSSLSSGDIVGL--YGEGGQLATGVLT 104
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
+++VA + + D S S R+ + LA+ +TY+R AL+ L+K
Sbjct: 105 RITQK------SVTVAFD-QSCDFQLSLDHENSYRLLK---LANDVTYKRLKTALIDLRK 154
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
H+ +P+ + + LFGD + S+++ + D SQ++A+ L+
Sbjct: 155 ---HRASPASSLIEVLFGDAAP---------SPASDIQAPAFYNPSLDASQQEAVLFALS 202
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+ R L II GPPGTGKT + EII +AV++G +VL AP+N AVDN+VE L+ G ++R
Sbjct: 203 Q-RELAIIHGPPGTGKTTTVVEIILQAVERGLKVLCCAPSNVAVDNLVEALARCGRRVLR 261
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
+G+PAR+ ++ L + ++ + +D+R+D+ Q L +D +
Sbjct: 262 LGHPARLLESIQQHCLDAALSRGDSTQIV------ADIRRDIDQVLVKLKKTQDKREKSN 315
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV------ 413
R +K L K LK++E+ E L SA V+LATNTGA+ D +R L D FD+V
Sbjct: 316 FRNEVKLLRKELKEREEAATLESLRSADVILATNTGASSDGPLRLLPDDFFDMVVVDECA 375
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLER-AATLHEGVLATK 459
+CILAGD QL P ++S KA + G+ +SL+ER A GVL T
Sbjct: 376 QALEASCWVPLLKASKCILAGDHKQLPPTVVSPKAAQEGLSLSLMERLAGQCGAGVLRT- 434
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPY 519
LT QYRM+ AI WAS+ +Y G L + +VA LL D P V T T PLLL+DT
Sbjct: 435 LTVQYRMHRAIMQWASEALYEGQLTAHPSVAERLLRDLPGVAATEETGLPLLLVDT---- 490
Query: 520 GSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
GC L+ S N GE +V HV +L+ AGV S IAV +PY QV LR
Sbjct: 491 ----AGCGLSELEQEDDQSRGNPGEVRLVSLHVQALVDAGVRASDIAVITPYNLQVDLLR 546
Query: 579 ERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
+ L PE +E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA +
Sbjct: 547 QSLTHRHPE---LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTRARR 603
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 604 HVAVICDSRTVSNHPFLKTLVDYFTEHGEVRTA 636
>gi|145351793|ref|XP_001420247.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580481|gb|ABO98540.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 464
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 195/465 (41%), Positives = 256/465 (55%), Gaps = 59/465 (12%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV-GLNIVRVGN 311
++ IQGPPGTGKT ++ EIIA+A +GERVL AP+N AVDN+VE+L V + VR G
Sbjct: 1 VVCIQGPPGTGKTSVVVEIIAQAAARGERVLACAPSNLAVDNLVERLDGVTDVRAVRFGA 60
Query: 312 PARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGI----RQLL 367
P RIS A S SL V F + S+ LR + A + R+ L
Sbjct: 61 PERISAAALSCSLDAKVSEATELFFQTQRVESSETSTKLRALMDRYQKATNVPKKQREKL 120
Query: 368 KQLGKTLKKKEKETVK-----------EVLSSAQVVLATNTGAADPLIRRLDTFDLV--- 413
+ + LKKK K TV ++L A VVLATN GA +++L FDLV
Sbjct: 121 QSEIEALKKKLKTTVSAGTKHRKASQAKILREANVVLATNAGAGMDTVQQLPPFDLVVVD 180
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLER---------- 447
G+R +L GD CQLAPV+ S +A+E G+ SL+ R
Sbjct: 181 EAAQASEPLSWIPLVRGRRAVLIGDPCQLAPVVRSLEAVEAGLARSLMSRLMPAPENLDD 240
Query: 448 -------AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
A GVL L+TQYR ++ I+SW+S+E YGG L ++ +V LL D P V
Sbjct: 241 EDDGWNARAYASSGVLTLTLSTQYRSHETISSWSSREAYGGRLRAAESVRGALLRDLPGV 300
Query: 501 KPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS 560
+ T IT+ P+L++ R PYG + C E GS+ NEGEA HV ++ AGV
Sbjct: 301 QDTQITRIPMLMITARSPYGRIPAECNER---RVGGSYINEGEATTAAAHVLMMLKAGVR 357
Query: 561 PSAIAVQSPYVAQVQHLRE----RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
S IAV SPY AQV+ LR L+D+ A VE+++IDSFQGREA+ VIIS VRSN
Sbjct: 358 ASDIAVISPYAAQVRLLRSVLAVALEDVEGADAVEISSIDSFQGREAECVIISTVRSNAR 417
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
VGFL D+RRMNVA+TR +HV ++ D TI + FL RL+ HI
Sbjct: 418 RGVGFLSDNRRMNVAVTRGKRHVTIIGDDKTIMGDAFLRRLVEHI 462
>gi|332249730|ref|XP_003274011.1| PREDICTED: DNA-binding protein SMUBP-2 [Nomascus leucogenys]
Length = 1002
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 245/695 (35%), Positives = 353/695 (50%), Gaps = 98/695 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + + ++ L S G +C +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIC-----------LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV F R LP + + GD+V + S ++ G
Sbjct: 48 LKLQVSSQRTGLYGRLLVTFEPRRCGSAAALPSNSFTSGDIVGLYDAASE---SSQLATG 104
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
+ + + +++VA + H D S S R+ + LA+ +TY R +AL+ L+K
Sbjct: 105 ILTRVTQK--SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIALKK- 157
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + LFG + + SE+ D SQK+A++ L++
Sbjct: 158 --YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVSFALSQ 206
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGK E+ + + G +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 207 KE-LAIIHGPPGTGKPWFDYEVNDQILTCGSQVLCCAPSNIAVDNLVERLALCKQRILRL 265
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D +
Sbjct: 266 GHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKREKSN 318
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL---DTFDLV------ 413
R +K L K LK++E+ + E L+SA VVLATNTGA+D +L FD+V
Sbjct: 319 FRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASDDGPLKLLPESHFDVVVIDECA 378
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P +S KA G+ +SL+ER A + + L
Sbjct: 379 QALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTL 438
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ AI WAS MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 439 TVQYRMHQAIMRWASDTMYLGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT----- 493
Query: 521 SLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
GC E D G N GE +V H+ +L+ AGV IAV SPY QV
Sbjct: 494 ---AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDL 547
Query: 577 LRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 LRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRA 604
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>gi|71122324|gb|AAH99790.1| Ighmbp2 protein [Rattus norvegicus]
Length = 869
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 245/694 (35%), Positives = 358/694 (51%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + +LL +ERDAE+E + + E+S ++ L S G +C
Sbjct: 4 STVESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LKELQSRG-----VC- 46
Query: 71 TICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V TGL G LV F + LP + + GD+V + + AT +
Sbjct: 47 -LLKLQVSGQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNESSQLATGVL 105
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
++ VA + H +L R+ LA+ +TY+R +AL+ L+
Sbjct: 106 TRITQK------SVIVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALLTLK 155
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G + + +E+ T D SQK+A++ L
Sbjct: 156 K---YHSGPASSLIDVLLGG---------STPSPATEIPPLTFYNTTLDPSQKEAVSFAL 203
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K + II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 204 AQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKQIL 262
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D
Sbjct: 263 RLGHPARLLESVQQHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREK 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV---- 413
+ R +K L K LK++E+ + + LS+A VVLATNTGA+ D ++ L D FD+V
Sbjct: 316 SNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYFDVVVVDE 375
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S KA G+ SL+ER A H +
Sbjct: 376 CAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVR 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRM+ AI WAS+ MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 436 MLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT--- 492
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV L
Sbjct: 493 -----AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLL 547
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 RQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRAR 604
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 638
>gi|149061856|gb|EDM12279.1| immunoglobulin mu binding protein 2, isoform CRA_a [Rattus
norvegicus]
Length = 1003
Score = 305 bits (781), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 241/694 (34%), Positives = 351/694 (50%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + +LL +ERDAE+E + + E+S ++ L S G +C
Sbjct: 19 STVESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LKELQSRG-----VC- 61
Query: 71 TICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V TGL G LV F + LP + + GD+V + + AT +
Sbjct: 62 -LLKLQVSGQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNESSQLATGVL 120
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
++ VA + H +L R+ LA+ +TY+ L
Sbjct: 121 TRITQK------SVIVAFDESHD----FQLNLDRENTYRLLKLANDVTYK---RLKKALL 167
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
+ P+ + + L G + + +E+ T D SQK+A++ L
Sbjct: 168 TLKKYHSGPASSLIDVLLGG---------STPSPATEIPPLTFYNTTLDPSQKEAVSFAL 218
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K + II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 219 AQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKQIL 277
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D
Sbjct: 278 RLGHPARLLESVQQHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREK 330
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV---- 413
+ R +K L K LK++E+ + + LS+A VVLATNTGA+ D ++ L D FD+V
Sbjct: 331 SNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYFDVVVVDE 390
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S KA G+ SL+ER A H +
Sbjct: 391 CAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVR 450
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRM+ AI WAS+ MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 451 MLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT--- 507
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV L
Sbjct: 508 -----AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLL 562
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 563 RQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRAR 619
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 620 RHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 653
>gi|13928794|ref|NP_113774.1| DNA-binding protein SMUBP-2 [Rattus norvegicus]
gi|81917357|sp|Q9EQN5.1|SMBP2_RAT RecName: Full=DNA-binding protein SMUBP-2; AltName:
Full=ATP-dependent helicase IGHMBP2; AltName:
Full=Antifreeze enhancer-binding protein ortholog;
Short=AEP
gi|11066349|gb|AAG28561.1|AF199411_1 antifreeze-enhancer binding protein AEP [Rattus norvegicus]
Length = 988
Score = 305 bits (780), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 240/692 (34%), Positives = 350/692 (50%), Gaps = 93/692 (13%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + + E+S ++ L S G +C +
Sbjct: 6 VESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V TGL G LV F + LP + + GD+V + + AT +
Sbjct: 48 LKLQVSGQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNESSQLATGVLTR 107
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
++ VA + H +L R+ LA+ +TY+ L
Sbjct: 108 ITQK------SVIVAFDESHD----FQLNLDRENTYRLLKLANDVTYK---RLKKALLTL 154
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + L G + + +E+ T D SQK+A++ L +
Sbjct: 155 KKYHSGPASSLIDVLLGG---------STPSPATEIPPLTFYNTTLDPSQKEAVSFALAQ 205
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K + II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 206 KE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKQILRL 264
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D +
Sbjct: 265 GHPARLLESVQQHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREKSN 317
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV------ 413
R +K L K LK++E+ + + LS+A VVLATNTGA+ D ++ L D FD+V
Sbjct: 318 FRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYFDVVVVDECA 377
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
+CILAGD QL P +S KA G+ SL+ER A H + L
Sbjct: 378 QALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVRML 437
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ AI WAS+ MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 438 AVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT----- 492
Query: 521 SLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV LR+
Sbjct: 493 ---AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQ 549
Query: 580 RLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L + PE +E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA +H
Sbjct: 550 SLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRH 606
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
VAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 607 VAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 638
>gi|66824331|ref|XP_645520.1| AN1-type zinc finger-containing protein [Dictyostelium discoideum
AX4]
gi|60473615|gb|EAL71556.1| AN1-type zinc finger-containing protein [Dictyostelium discoideum
AX4]
Length = 1024
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 209/618 (33%), Positives = 322/618 (52%), Gaps = 71/618 (11%)
Query: 100 LPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGD------PT 153
LPP +S GD+V +R S+ +G V+ + D I +A + + D P
Sbjct: 99 LPPHKISNGDIVGIRPSKSKPG-TNHYFKGVVYKV--DSRKIVIAFDDNYEDSDPNNRPM 155
Query: 154 FSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKR--NPSIAAVVTLFGDKEDV 211
+ F ID+ LA+ +TY++ E+L L+ N ++KR N + + L D
Sbjct: 156 LDEYFQTLYSIDK---LANDVTYKKIRESLDKLKLN-VNKRTGNSENSLINLLLND---- 207
Query: 212 TWLEENDLADWSEVKLDG----IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGL 267
+ N+ + + ++ + ++ K + SQK+AI L+ + I GPPGTGKT
Sbjct: 208 GYQPSNNNSYFQQINKEKFEQQLINKGLNQSQKEAILFSLSS-NDVACIHGPPGTGKTTT 266
Query: 268 LKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVG---------LNIVRVGNPARISPA 318
+ E I + ++ G++VL P+N +VDNM+EKL + +N R+G+P RI P
Sbjct: 267 VVEFIVQLIKSGKKVLACGPSNLSVDNMLEKLLEYSNSSSCNGFLINATRIGHPTRILPQ 326
Query: 319 VASKSLGEIVK-SKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKK 377
+ +L K S+ + + + L K L + +K S I+ +K+L LK +
Sbjct: 327 LLKHTLDHKTKNSEGGQIIKGIKDEIKSLSKQLLK-VKQHSERRVIQSSIKELRIDLKNR 385
Query: 378 EKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCI 418
EK +++V++ + V+L+TNTGA+D ++ +D FD V G + +
Sbjct: 386 EKSLIQQVINDSNVILSTNTGASDSSLKGIDNFDWVVIDECAQALEASCWIPIQKGNKLL 445
Query: 419 LAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEM 478
LAGD QL P I S +A + G+ ++L ER + ++ L QYRMN I W+S E
Sbjct: 446 LAGDHQQLPPTIHSMEAAKMGLSITLFERIIKQYGDQVSRLLNVQYRMNHKIMDWSSMEF 505
Query: 479 YGGSLISSSTVASHLLV--DTPFVKPTWITQCPLLLLDTRLPYGSLSLGC--EEHLDLAG 534
Y +I+ +V++HLLV D+P ++ T T CPLL++DT GC EE D G
Sbjct: 506 YNSKMIADKSVSNHLLVTGDSPKIRNTLTTTCPLLMIDTS--------GCDMEESQDDEG 557
Query: 535 TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVAT 594
F N GE +V H+ LI GV P+ I V +PY QV+ L+ L + + +E+ T
Sbjct: 558 ESKF-NNGEVIVVKRHIEKLIECGVKPNDIGVITPYNGQVKLLKSYLS--KKYSSMEIGT 614
Query: 595 IDSFQGREADAVIISMVRSNTLG--AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+D FQGRE D +IISMVRSNT VGFL + RR NVAITRA KHV VVCD+ TI +
Sbjct: 615 VDGFQGREKDVIIISMVRSNTDAPHKVGFLTEDRRTNVAITRARKHVVVVCDTDTISSHE 674
Query: 653 FLARLLRHIRYFGRVKHA 670
L R++ + + G + A
Sbjct: 675 PLKRMVDYFKLNGLFRSA 692
>gi|410974756|ref|XP_003993808.1| PREDICTED: DNA-binding protein SMUBP-2 [Felis catus]
Length = 957
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 236/632 (37%), Positives = 331/632 (52%), Gaps = 75/632 (11%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L V S TGL G LV F R LP + + GD+V + D G AT +
Sbjct: 38 LLKLQVSSQRTGLYGRLLVTFEPRRCASATALPSNSFTSGDIVGL--YDEGGQLATGILT 95
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
+ +++VA + H +L R R+ LA+ +TY+R +AL+ L+K
Sbjct: 96 RIMQR------SVTVAFDESHD----FQLSLDRERAYRLLKLANDVTYKRLKKALITLKK 145
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
+ P+ + + +FG + + SE + + D SQK+A++ L+
Sbjct: 146 ---YHSGPASSLIEVVFGG---------SPPSPASETQPPPFCNTSLDASQKEAVSFALS 193
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+K L II GPPGTGKT + EII +AV++G +VL AP+N AVDN+ E+L+ ++R
Sbjct: 194 QKE-LAIIHGPPGTGKTTTVVEIILQAVRRGLKVLCCAPSNVAVDNLAERLARCQQKVLR 252
Query: 309 VGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAA 361
+G+PAR+ + SL ++ +S A VA D+RKD+ Q +D +
Sbjct: 253 LGHPARLLECIQQHSLDAVLARSDSAQIVA-------DIRKDIDQAFLKNRQTQDKREKS 305
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRLD-TFDLV----- 413
+K L K LK++E+ + E L SA VVLATNTGA+ PL D FD+V
Sbjct: 306 SFWNEIKLLRKELKEREEAAMLESLRSAAVVLATNTGASPDGPLKLLPDGHFDVVVIDEC 365
Query: 414 --------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459
+CILAGD QL P I+S KA G+ +SL+ER +
Sbjct: 366 AQALEASCWIPLLKAGKCILAGDHKQLPPTIVSPKAAAAGLALSLMERLVAEQGASVVRT 425
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPY 519
LT QYRM+ AI WAS+ +Y G L + +VA HLL D P V T T PLLL+DT
Sbjct: 426 LTVQYRMHRAIMQWASEALYHGRLTAHPSVAGHLLRDLPGVAATEETGIPLLLVDT---A 482
Query: 520 GSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
G EE D S N GE +V HV +L+ AGV S IAV +PY QV LR+
Sbjct: 483 GCGLFELEEEDD----QSKGNPGEVRLVSLHVQALVEAGVRASDIAVITPYNLQVDLLRQ 538
Query: 580 RLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L PE +E+ ++D FQGRE +AV++S VRSN G VGFL + RR+NVA+TRA +H
Sbjct: 539 SLAHRHPE---LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTRARRH 595
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
VAVVCDS T+ ++ FL L+ H G V+ A
Sbjct: 596 VAVVCDSRTVNNHAFLKTLVDHFTEHGEVRTA 627
>gi|281203712|gb|EFA77908.1| AN1-type zinc finger-containing protein [Polysphondylium pallidum
PN500]
Length = 988
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 210/626 (33%), Positives = 328/626 (52%), Gaps = 62/626 (9%)
Query: 72 ICNLFVVSTSTGLGG---MHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
I L + S STGLGG + LV N LPP +PGD+V +R ++ S +
Sbjct: 65 IRKLVIESFSTGLGGRCLVRLVPVNAAPNQDLPPHKFTPGDVVGLRALKTQPG--QSLVT 122
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V+ + D I+VA + + T +L G + I LA+ +TY + +A+ L+
Sbjct: 123 GIVYRV--DRSRITVAYDDL-AESTIEQLQG----VFAIDKLANDITYRKMRDAIERLKT 175
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
N I + LF ++E +++ VK+ + K + Q +AI L+
Sbjct: 176 T-----NSPITDI--LFSNQEPTHTIKK--------VKISAV-SKKLNQPQIEAIEFALS 219
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVG--LNI 306
+ +I GPPGTGKT + E I + + G RVL P+N +VDN++E+L + +N
Sbjct: 220 SNE-IALIHGPPGTGKTTTVVEFIVQVCKGGGRVLACGPSNLSVDNILERLLEFKDIVNP 278
Query: 307 VRVGNPARISPAVASKSLGEIVKS-KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQ 365
R+G+PARI + +L K+ + A + E + + + L K L+ + +
Sbjct: 279 TRIGHPARILSGLTKHTLDHKTKNGQDAQILKEIKIEIATLMKQLKDGQVEKGARRSVYN 338
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------ 413
++ L K LK +E V +V+ ++ V+L+TNTGAAD ++ R + FD V
Sbjct: 339 TIRDLRKDLKNREFSLVDQVIRNSNVILSTNTGAADYVLSRCEPFDWVIIDEAAQALEAS 398
Query: 414 -------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
GK+ +LAGD QL P I S +A G+ ++ ER L++ ++ L+ QYRM
Sbjct: 399 CWIPISRGKKLLLAGDHQQLPPTIHSEQAKSDGLETTMFERLIQLYQENISRLLSVQYRM 458
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVD-TPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
N I W+S E Y G +++ ++VA+HLL++ + + T CPL+L+DT L
Sbjct: 459 NQEIMRWSSDEFYHGRMLADNSVANHLLLERSTKNRVATTTTCPLMLIDTS------GLD 512
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
EE D F N GEA+IVV ++ L+ GV S+I V +PY QV+ L+ L +
Sbjct: 513 MEESADDESQSKF-NVGEADIVVKYIEKLLRYGVEQSSIGVITPYNGQVKQLKMVLSN-- 569
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTL-GAVGFLGDSRRMNVAITRACKHVAVVCD 644
+ +E+ T+D FQGRE + VIIS VRSN VGFL + RRMNVAITRA + V +V D
Sbjct: 570 RFSDIEIGTVDGFQGREKEVVIISTVRSNAAPHNVGFLAEERRMNVAITRAKRQVTLVSD 629
Query: 645 SSTICHNTFLARLLRHIRYFGRVKHA 670
+ T+ N FLAR++ + + G ++ A
Sbjct: 630 TDTLSSNPFLARMVEYFKLNGELRSA 655
>gi|395851782|ref|XP_003798431.1| PREDICTED: DNA-binding protein SMUBP-2 [Otolemur garnettii]
Length = 991
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 243/668 (36%), Positives = 342/668 (51%), Gaps = 82/668 (12%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + + EN ++ L S G +C +
Sbjct: 38 VESFVTKQLDLLELERDAEVEERR-------SWQENIS----LKELQSRG-----VC--L 79
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV F R LP + + GD+V + S G + G
Sbjct: 80 LKLQVSSQCTGLYGRLLVTFEPRRCGSEAVLPSNSFTSGDIVGLYDTASEG---SQLATG 136
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
+ + + T++ ES+ D S S R+ + LA+ +TY+R +AL+ L+K
Sbjct: 137 ILTRITQKSATVAFD-ESQ--DFQLSLDRENSYRLLK---LANDVTYKRLKKALIALKK- 189
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + LF + + SE+ L + D SQK+A++ L++
Sbjct: 190 --YHSGPASLLIEVLFS---------ASAPSPASEIGLVTFCNASLDSSQKEAVSFALSQ 238
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 239 KE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAQCKQRILRL 297
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQC----LKDDSLAAGIR 364
G+P+RI + SL ++ +S A VAE +RKD+ Q L LA G
Sbjct: 298 GHPSRILEPIQQYSLDAVLARSDGAQIVAE-------IRKDIDQVFVCVLVTGPLACGAS 350
Query: 365 Q--LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGKRCILAGD 422
LK L E+ +V+ + A PL++ ++CILAGD
Sbjct: 351 SDGPLKLL--------PESYFDVVVIDECAQALEASCWIPLLK--------ARKCILAGD 394
Query: 423 QCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
QL P I+S KA G+ SL+ER A H LT QYRM+ AI WAS+ MY G
Sbjct: 395 HQQLPPTIISHKAALAGLSRSLMERLAEEHGASAVRTLTVQYRMHQAIMRWASEAMYHGQ 454
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG 542
L + +VA HLL D P V T T PLLL+DT G EE D S N G
Sbjct: 455 LTAHPSVAGHLLRDLPGVAATEETSIPLLLVDT---AGCGLFELEEEDD----QSRGNPG 507
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGRE 602
E +V HV +L+ AGV S IAV +PY QV LR+ L + +E+ ++D FQGRE
Sbjct: 508 EVRLVTLHVQALVDAGVQASDIAVITPYNLQVDLLRQSL--VRRHPQLEIKSVDGFQGRE 565
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+AVI+S VRSN G VGFL + RR+NVA+TRA +HVAV+CDS TI ++TFL L+ +
Sbjct: 566 KEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTISNHTFLKTLVEYFS 625
Query: 663 YFGRVKHA 670
G V+ A
Sbjct: 626 QHGEVRTA 633
>gi|340380524|ref|XP_003388772.1| PREDICTED: DNA-binding protein SMUBP-2-like [Amphimedon
queenslandica]
Length = 1025
Score = 294 bits (753), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 249/702 (35%), Positives = 359/702 (51%), Gaps = 90/702 (12%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+++F ++ EL+ ER E+ + L+ + T +N I+ L + G +C +
Sbjct: 1 MEDFVEKHLELIEQERQEEV---AQGLSLLSTDLKN------IKELETKG-----VC--L 44
Query: 73 CNLFVVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFV 131
L + S GL G H+V F G H+LP +++ GD+V + + + G V
Sbjct: 45 SKLGIESERIGLFGRHIVTFSHRLGRHKLPTHSITCGDIVGI-FSKGQSLLPGQLVSGVV 103
Query: 132 HNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGL 191
+ + VA E + + L G +++ + LA+ +TY+R AL N L
Sbjct: 104 --VKSSDVHLGVAFEELPEEVSLGGL-GDCLQVVK---LANDITYKRMKRAL-----NDL 152
Query: 192 HKRNPSIAA--VVTLFG----DKEDVTWLEENDLA----DWSEVKLDGIMGKTFDDSQKK 241
+P +++ V LF W + D D S+ K ++ D SQK+
Sbjct: 153 KSMDPILSSHLVDVLFQATPPGPSHSKWTYQLDQLQTQFDSSDFKF---FNQSLDSSQKR 209
Query: 242 AIALGLNKKRP-LLIIQGPPGTGKTG-LLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
A+ L+ RP + II GPPGTGKT +++ I+ + +VL AP+N AVDN+VE+L
Sbjct: 210 AVFFALS--RPDVAIIHGPPGTGKTTTVIEYILQETLTLNNKVLAVAPSNIAVDNLVERL 267
Query: 300 --SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKD- 356
S L I+R+G+PAR+ +V SL I+ S S + D+RK++
Sbjct: 268 AASSPKLKIIRLGHPARLVQSVLQYSLDSILASTDGSDIV------LDVRKEMSSAWSKA 321
Query: 357 -DSLAAGIRQLLKQLGKTLKK----KEKETVKEVLSSAQVVLATNTGAAD--PLIR-RLD 408
++ ++ R+ KTLKK +E++ V+++LS A V+LATNTGA PL +D
Sbjct: 322 GNAKSSSERRKWHTEAKTLKKELIEREEKLVQQILSGANVILATNTGATPTGPLKHLPID 381
Query: 409 TFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAA 449
FD+V +CILAGD QL P ILS KA G+ V+L+ER
Sbjct: 382 HFDVVVIDECAQSLEASCWIPLSRAPKCILAGDHKQLPPTILSDKAARDGLAVTLMERLV 441
Query: 450 TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCP 509
+++ + T LTTQYRMN I W S+ +Y SL + +V+ HLL D P V T T P
Sbjct: 442 SVYRDQVTTLLTTQYRMNHNIMKWPSQYLYEDSLTAHESVSHHLLKDLPTVTITTATTIP 501
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
LL +DT S G E LD S NEGEAEIV+ HV LI AGV IA+ +P
Sbjct: 502 LLFIDT------ASCGLYE-LDTPSEESKGNEGEAEIVLAHVKELIGAGVREGDIAIIAP 554
Query: 570 YVAQVQHLRERLDDLPEAAG-VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
Y QV +RERL+ + G VEV T+D FQGRE +AVIIS RSN G GFL + RR
Sbjct: 555 YHLQVGMIRERLEANGISTGKVEVHTVDGFQGREKEAVIISFTRSNKKGEFGFLKEQRRT 614
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
NVA+TRA +H+A+V DS TI F+ LL + G V A
Sbjct: 615 NVAVTRARRHLAMVGDSETISREPFIKGLLEYCTNNGEVYSA 656
>gi|320164041|gb|EFW40940.1| immunoglobulin mu binding protein 2 [Capsaspora owczarzaki ATCC
30864]
Length = 679
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 241/720 (33%), Positives = 353/720 (49%), Gaps = 117/720 (16%)
Query: 15 EFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICN 74
+F L+ +ER AE+E T + T + LV G LC +
Sbjct: 10 KFVATQQLLIDLERKAEVERTDNLRQTLTTAE-----------LVQRG-----LC--LVK 51
Query: 75 LFVVSTSTGLGGM-HLVLFRVEG-----NHRLPPTTLSPGDMVCVR--VCDSRGA--CAT 124
L V S+ TG GG H+ L V G ++ LP PGD+V + + S G AT
Sbjct: 52 LTVASSYTGFGGKCHVDLELVGGGKNAADNLLPANKFRPGDIVTIEQNIKGSSGVNMSAT 111
Query: 125 SCIQ--------------------GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRI 164
S ++ G V+ + T+S++ +P L +R+
Sbjct: 112 SSMKQASAPAGSSDDGQQQQQRVSGVVYKTSDARVTVSLS------EPLPDYLLDCVLRL 165
Query: 165 DRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLA-DWS 223
D G DT TY+R C + L G + P V LFG + + E A W
Sbjct: 166 D--MGANDT-TYKRCCNVISKLGL-GAYSSLPCSHLVDVLFGQSKPLFTTEIAPSAISW- 220
Query: 224 EVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE--- 280
+ +D Q+ A++ L + +I GPPGTGKT + E+I + V +
Sbjct: 221 -------LNPGLNDVQRSAVSFCL-AASDVALIHGPPGTGKTTTIVELINQIVMRHGPEV 272
Query: 281 RVLVTAPTNAAVDNMVEKL-SDVGLNIVRVGNPARISPAVASKSLGEIVK-SKLASFVAE 338
++L P+N +VDN+VE+L + ++VR+G+PAR+ P+V + SL ++ S VA+
Sbjct: 273 KILACGPSNVSVDNIVERLVASNKTSVVRLGHPARMLPSVLAHSLESVMAASDAGKLVAD 332
Query: 339 FERKKSDLRKDL-----RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+R+ K L RQ K+ + LK L K LKK+E+++V++VL S QV
Sbjct: 333 IKREMDAATKKLARPIPRQERKE------LYNELKNLRKELKKRERDSVQQVLQSTQVTC 386
Query: 394 ATNTGAADPLIRRLD-TFDLV-------------------GKRCILAGDQCQLAPVILSR 433
T TGA +I +D V GKR +LAGD QL P ILS
Sbjct: 387 CTLTGAMSKMIASSPINYDWVIIDEAPQSMEVHCWMAILKGKRLVLAGDHKQLPPTILSD 446
Query: 434 KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
A + G+ ++L +R + + LT QYRMN I W+S EMYGG L S+ +V +HL
Sbjct: 447 AAEKKGLSLTLFDRLIKAYGDQVTRMLTVQYRMNAKIMQWSSNEMYGGKLTSAPSVQAHL 506
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH-LDLAGTGSFYNEGEAEIVVHHVF 552
L + P VK T T+ L +DT GC + + A S NEGEA++VV HV
Sbjct: 507 LCELPRVKKTEETESALFFIDT--------TGCSLYETEAADDESKSNEGEADVVVQHVK 558
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMV 611
L+ AGV+ +AV +PY AQV LR +L P+ +E+ ++D FQGRE +AV+IS+V
Sbjct: 559 RLLDAGVTERDMAVITPYNAQVGRLRSKLSVQYPQ---LEIGSVDGFQGREKEAVVISLV 615
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
RSN VGFL + RR+NVAITRA +HV V+ DS T+ ++ FL RL+ + G ++ AE
Sbjct: 616 RSNDKREVGFLAEHRRLNVAITRARRHVCVIGDSDTVSNDKFLGRLVDWLCEHGELRSAE 675
>gi|406836754|ref|ZP_11096348.1| AAA ATPase [Schlesneria paludicola DSM 18645]
Length = 628
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 228/644 (35%), Positives = 329/644 (51%), Gaps = 86/644 (13%)
Query: 59 VSHGRAPQELCD----TICNLFVVSTSTGLGGMHLV-LFRVEGNHRLPPTTLSPGDMVCV 113
++ RAP E + T+ L + + G GG +V L + + LP T L G V +
Sbjct: 24 IASRRAPSEQAELTGSTLVGLAIRDETPGFGGRTVVTLGKRDRRLELPWTRLRSGMPVVL 83
Query: 114 RV--CDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLA 171
V D+R +G V D +I+V L L+ R+ A
Sbjct: 84 SVQQADNRTGW-----RGIV--TWRDRDSIAVVLSDSPETEVDRPLY-------RLDMAA 129
Query: 172 DTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIM 231
D + ER AL ++ G R ++ + G + E + + DWS +
Sbjct: 130 DDVARERQRSAL---RRIGEIDRGRALRLKQAVLGKEPP----EFDAVPDWSPLA----- 177
Query: 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAA 291
D+SQ+ A++ L+ + L +I GPPGTGKT + E+I +AV++GE+VL A +N A
Sbjct: 178 --QLDESQQAAVSHALSAQH-LAVIHGPPGTGKTTTVVELIRQAVRRGEKVLACAASNLA 234
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKS----KLASFVAEFERKKSDLR 347
VDN++E+L ++R+G+PAR+ P + +L +V+S KLA E+ ++ LR
Sbjct: 235 VDNLLERLVIARERVIRIGHPARVLPELREHTLDVMVESHPDLKLAR---EWTKEAWSLR 291
Query: 348 KDLRQCLKDDSLAA------GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
RQ K A R K+L + ++ E V+ +L SAQVV AT TG D
Sbjct: 292 ---RQAGKFTRTAPPPGARRDARDEAKRLLRDARELESRLVEYLLDSAQVVCATLTGLND 348
Query: 402 PLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGV 442
++ FDLV KR +LAGD CQL P I+S A G V
Sbjct: 349 EILGE-RQFDLVVIDEAAQSTEPPCWIPLLRSKRLVLAGDHCQLPPTIISHDARREGFQV 407
Query: 443 SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
S++ER + ++A +L TQYRM+D I ++S E Y SLIS+++V +H L D P V
Sbjct: 408 SMMERLVSRWGDLIARRLDTQYRMHDRIMQFSSDEFYDSSLISANSVRAHRLADLPHVTD 467
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPS 562
+TQ + DT GS C E ++ G S N GEAE VV V L+ AGV P+
Sbjct: 468 GELTQSSIRFFDT---AGS---DCVEQAEVEGE-SRTNPGEAEFVVIKVNELLAAGVRPT 520
Query: 563 AIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
IAV +PY AQ + LR L AGVE+ T+D FQGRE +AV+IS+VRSN G +GFL
Sbjct: 521 EIAVITPYSAQARLLRT----LIAEAGVEIDTVDGFQGREKEAVVISLVRSNAKGELGFL 576
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGR 666
D+RRMNVA+TRA +H+ V DS+T+ ++ F R+L YF R
Sbjct: 577 TDTRRMNVALTRARRHLMVFGDSATLANHEFYLRML---NYFER 617
>gi|328875613|gb|EGG23977.1| AN1-type zinc finger-containing protein [Dictyostelium
fasciculatum]
Length = 1035
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 227/655 (34%), Positives = 332/655 (50%), Gaps = 81/655 (12%)
Query: 72 ICNLFVVSTSTGLGGMHLV-LFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGF 130
I L + S STGLGG LV L + LPP +PGD+V +R S+ + S G
Sbjct: 68 IRKLKLNSISTGLGGRCLVKLVSAVQDEYLPPHRFTPGDIVGIRTTKSKPGQSLSS--GV 125
Query: 131 VHNLGEDGCTISV----------------ALESRHGDPTFSKLFG--KSVRIDRI---QG 169
V+ + TIS A++ D T+ K+ +S+R DRI G
Sbjct: 126 VYRVDRFRITISFDEYDEELMADWESFVFAIDKLSNDVTYRKMREALESLRSDRIASGSG 185
Query: 170 LADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDG 229
T+T + + L ++ + P +A T + + + L
Sbjct: 186 GGTTITNQVSSRILDVV----FNGAEPHQSATYTSSSENNNNN----------NNTTLKP 231
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
I K + +Q KA+ L + +I GPPGTGKT + E I + V++G+RVL AP+N
Sbjct: 232 ITSK-LNQTQIKAVEFALGSS-DIALIHGPPGTGKTTTVVEFIVQCVRRGQRVLACAPSN 289
Query: 290 AAVDNMVEKLSDV-GLNIVRVGNPARISPAVASKSLGEIVK-SKLASFVAEFERKKSDLR 347
AVDNM+EKL V G+N RVG+PARI ++ +L K S+ A V ++ +DL
Sbjct: 290 LAVDNMLEKLIAVNGINPTRVGHPARIMEGLSKYTLDHKTKNSEEAEVVRGLRKEIADLL 349
Query: 348 KDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL 407
K+ + D I +K L K L+ +E V++V+ +++VVL+T TGAAD +R
Sbjct: 350 KETKSKGTDRDRRRVIGSTIKDLRKDLRSREVVLVEQVIKNSKVVLSTCTGAADYSLRHH 409
Query: 408 DTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERA 448
D FD+V G+R +LAGD QL P I S A + G+ V+L ER
Sbjct: 410 D-FDIVVIDEAGQALEASCWIAIRKGRRLVLAGDHQQLPPTIHSDDAAKDGLSVTLFERL 468
Query: 449 ATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWIT 506
++ ++ L+ QYRMN +I +W+SKE Y + + +VASHLL ++ +K T T
Sbjct: 469 IRIYGDKISRLLSIQYRMNQSIMNWSSKEFYNSEMHADESVASHLLQGLNPEKIKTTPTT 528
Query: 507 QCPLLLLDTRLPYGSLSLGC--EEHL--DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPS 562
CP++L+DT GC EE + ++ S N GEA +V +V L+ GV S
Sbjct: 529 TCPIVLIDTS--------GCDMEESMEDEIGVDQSKSNIGEARVVATYVKKLLQHGVLES 580
Query: 563 AIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN-TLGAVGF 621
I + SPY QV+ L+ + E+ +E+ T+D FQGRE + +IISMVRSN VGF
Sbjct: 581 NIGIISPYNGQVKCLKAVI----ESKQIEIGTVDGFQGREKEVIIISMVRSNPPPHNVGF 636
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFG 676
L + RR NVAITRA + V +V D TI FL R++ + R G V+ A S G
Sbjct: 637 LKEDRRTNVAITRARRQVVIVADCLTISSYPFLKRMVDYCRETGLVRSALEYSAG 691
>gi|403301188|ref|XP_003941279.1| PREDICTED: DNA-binding protein SMUBP-2 [Saimiri boliviensis
boliviensis]
Length = 969
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 232/664 (34%), Positives = 336/664 (50%), Gaps = 75/664 (11%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + ELL +ERDAE+E + + EN ++ L S G +C +
Sbjct: 6 VESFVAKQLELLELERDAEVEERR-------SWQENIS----LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV R LP + + GD+V + + G+ + I
Sbjct: 48 LKLQVSSQRTGLYGRLLVTLEPRRCGSAAALPSNSFTSGDIVGLYDAANEGSQLATGILT 107
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V +++VA + H D S S R+ + LA+ +TY+R +AL L+K
Sbjct: 108 RVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYKRLRKALTALKK- 157
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + LFG + + SE+ D SQK+A++ L++
Sbjct: 158 --YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDASQKEAVSFALSQ 206
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 207 KE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNVAVDNLVERLALCKQRILRL 265
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
G+PAR+ ++ SL ++ +S A VA D+RKD+ Q + A +
Sbjct: 266 GHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFV--GVVASVHVGCA 316
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLAP 428
LK + V+ + A PL++ +CILAGD QL P
Sbjct: 317 SGDGPLKLLPEGHFGMVVID-ECAQALEASCWIPLLQ--------AGKCILAGDHKQLPP 367
Query: 429 VILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSST 488
++S +A G+ +SL+ER A + + LT QYRM+ AI WAS+ MY L + +
Sbjct: 368 TVISHRAALAGLSLSLMERLADEYGERVVRTLTVQYRMHQAIMRWASEAMYLRQLTAHPS 427
Query: 489 VASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFYNEGEAEIV 547
VA HLL D P V T T PLLL+DT GC L+ S N GE +V
Sbjct: 428 VAGHLLRDLPGVAATEETGVPLLLVDT--------AGCGLFELEEEDEQSKGNPGEVRLV 479
Query: 548 VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAV 606
H+ +L+ AGV IAV SPY QV LR+ L PE +E+ ++D FQGRE +AV
Sbjct: 480 SLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLAHRYPE---LEIKSVDGFQGREKEAV 536
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGR 666
I+S VRSN G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G
Sbjct: 537 ILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGE 596
Query: 667 VKHA 670
V+ A
Sbjct: 597 VRTA 600
>gi|159464225|ref|XP_001690342.1| hypothetical protein CHLREDRAFT_127992 [Chlamydomonas reinhardtii]
gi|158279842|gb|EDP05601.1| predicted protein [Chlamydomonas reinhardtii]
Length = 640
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 207/599 (34%), Positives = 309/599 (51%), Gaps = 57/599 (9%)
Query: 100 LPPTTLSPGDMVCVRVCDSRG-ACATSCIQGFVHNLGEDGCTISV--ALESRHGDPTFSK 156
LPP P D+V +R SRG A + + G ++ + E+ T++V A E P +
Sbjct: 64 LPPHKFGPHDVVALR--PSRGPADGPAVVSGVIYRIRENSITVAVDEAPEEGLDQPLRLE 121
Query: 157 LFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEE 216
V R++G D+L R+ A +G + P A + ++G +E E
Sbjct: 122 KLANEVTYQRLRGTLDSLLKARSGTAAT---PDG--RLLPGGALLDVVWGRREPQFAAEA 176
Query: 217 NDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV 276
+W + DDSQ++A+ L L+ K L ++ GPPGTGKT + EII + V
Sbjct: 177 ---PEWKP------LNTGLDDSQRQAVTLALSAK-DLALVHGPPGTGKTTAVVEIILQEV 226
Query: 277 QQGERVLVTAPTNAAVDNMVEKL--SDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLA 333
+G RVL + +N AVDN+VE+L ++ L +VR+G+PAR+ PAV SL +++S +
Sbjct: 227 ARGSRVLAASASNIAVDNLVERLVRANPKLKLVRMGHPARLLPAVLDSSLEAHVLRSDNS 286
Query: 334 SFVAEFERK-KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVV 392
+ + + KS + L+ +D + +R L++LGK +++++ V EV+ AQVV
Sbjct: 287 ALARDCRAEIKSINARLLKLGPRDRAERRELRGDLRRLGKEERQRQEAAVAEVIKGAQVV 346
Query: 393 LATNTGAADPLIRRLDT--FD-------------------LVGKRCILAGDQCQLAPVIL 431
T TG + R+LD FD L +R +LAGD QL P ++
Sbjct: 347 CCTLTGVSH---RQLDKELFDVAVVDEAAQALEAATWGALLRARRAVLAGDHLQLPPTVV 403
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
S +A G+ +L ER T + LT QYRMN AI W+S E+Y G L + +VA
Sbjct: 404 SDEAARLGLARTLFERLQT-SVPTASAMLTVQYRMNKAIMQWSSDELYHGKLTAHPSVAE 462
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV 551
H L D P +DT G EE + G+ S+ N GEA+ V+ HV
Sbjct: 463 HTLRDMPPDAAAGAPGAGCKGMDT------AGCGFEEQQEAEGS-SYANPGEAKAVMAHV 515
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
L+ G+ P I + +PY AQV L+E L +E++++D FQGRE +A+++SMV
Sbjct: 516 ARLVRIGIPPQHIGIITPYNAQVALLKE-LRAQSVGGALEISSVDGFQGREKEAILVSMV 574
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
RSN G VGFL D RRMNVA+TRA +H AV CDS T+ + FL RL+ + G A
Sbjct: 575 RSNDGGGVGFLSDRRRMNVAVTRARRHCAVFCDSETVSQDGFLKRLVEYFSTHGEYTSA 633
>gi|402892584|ref|XP_003909490.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2 [Papio
anubis]
Length = 1010
Score = 275 bits (703), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 242/711 (34%), Positives = 346/711 (48%), Gaps = 111/711 (15%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + V ++ L S G +C +
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENVS-----------LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V S TGL G LV F R LP + + GD+V + + G+ + I
Sbjct: 48 LKLQVSSQRTGLYGRLLVTFEPRRCGSVAALPSNSFTSGDIVGLYDAANEGSQLATGILT 107
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V +++VA + H D S S R+ + LA+ +TY R +AL+ L+K
Sbjct: 108 RVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIALKK- 157
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + LFG + + SE+ + D SQK+A++ L++
Sbjct: 158 --YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTSLDASQKEAVSFALSQ 206
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 207 KE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRL 265
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ ++ SL +V +S A VA D+RKD+ Q +D +
Sbjct: 266 GHPARLLESIQQHSLDAVVARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKREKSN 318
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV------ 413
R +K L K LK +E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 319 FRNEVKLLRKELKGREEAAILESLTSANVVLATNTGASADGPLKLLPESHFDVVVIDECA 378
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
++CILAGD QL P ++S KA G+ +SL+ER A + L
Sbjct: 379 QALEASCWIPLLKARKCILAGDHKQLPPTVVSHKAALAGLSLSLMERLAEEYGARAVRTL 438
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
T QYRM+ I WAS MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 439 TVQYRMHQTIMRWASDTMYHGQLTAHPSVAGHLLRDLPGVAATEETGVPLLLVDT----- 493
Query: 521 SLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
GC L+ S N GE +V H+ +L+ AGV +AV SPY QV LR+
Sbjct: 494 ---AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDVAVVSPYNLQVDLLRQ 550
Query: 580 RLDDL-PEAAGVEVATIDSFQGREADA-------------------VIISMVRSNTLGAV 619
L PE +E+ + R A V+ N L V
Sbjct: 551 SLAHRHPE---LEIKSPLCTAPRGVVAVAVGSVPLWVVGFPLGTRVVVPEAGLVNGLCEV 607
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
GFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 608 GFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 658
>gi|440797031|gb|ELR18126.1| putative DNA helicase [Acanthamoeba castellanii str. Neff]
Length = 1108
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 246/780 (31%), Positives = 351/780 (45%), Gaps = 186/780 (23%)
Query: 12 RLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQEL--- 68
++ +F ++ ELL ERDAE+E T+ + G +P+EL
Sbjct: 8 KVSKFVEKQLELLNDERDAEIEQTR---------------------ALQEGYSPKELQRY 46
Query: 69 CDTICNLFVVSTSTGLGGMHLVLFRVEGNHR---LPPTTLSPGDMV-----CVRVCDSRG 120
+ + L VV TG+GG+ LV LP PGD+V V +
Sbjct: 47 GECVLRLHVVGRKTGVGGLLLVKLARAATAATTPLPSHRFQPGDIVGLVPSNVPISSFMV 106
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDR-------IQGLADT 173
G ++ E T+S FSK+ + + +D + LA+
Sbjct: 107 ESMQKGKGGVIYRAAEHSITVS-----------FSKMDEEGLALDTDGNTTYTLIRLAND 155
Query: 174 LTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGK 233
+TY+R +AL L++ + + GD + + + L E + G
Sbjct: 156 VTYKRYRKALEALRQQ--------VTSRTAGGGDNDHLKQV----LFGLGEPRFVGHFRN 203
Query: 234 TFD---------DSQKKAI--ALGLNKKRPL--LIIQGPPG------TGKTGLLKEIIAR 274
F+ DSQK+AI ALG P+ + PG TGKT + E I +
Sbjct: 204 RFELTPFNPNLNDSQKEAITFALGTIDFHPVSSRVPGTDPGLVNCGATGKTTTVVEFILQ 263
Query: 275 AVQQGERVLVTAPTNAAVDNMVEKLS----DVGLNIVRVGNPARISPAVASKSLGEIVK- 329
V++GERVL TAP+N AVDN+ E+L+ G IVRVG+PAR+ P+V SL VK
Sbjct: 264 CVKRGERVLATAPSNIAVDNIAERLAVYAKQSGAKIVRVGHPARLLPSVVGLSLDARVKQ 323
Query: 330 -SKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSS 388
S + ++ + L+ L + + G+ L+QL K L ++E + V E+LS
Sbjct: 324 HSHQTELADDVRKEMAKLQSSLGKATPGER--RGVYAQLRQLRKELWEREGKAVDEILSQ 381
Query: 389 AQVVLATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPV 429
A ++LATNTGAAD +++L FD L K+ ILAGD CQL P
Sbjct: 382 ANIILATNTGAADKKLQKLPMFDVAVIDEAAQAVEASCWIPILKAKKLILAGDHCQLPPT 441
Query: 430 ILSRKALEGGIGVSLLERA-----------------ATLHEGVLATKLTTQYRMNDAIAS 472
I+S A + G+ +L +RA ++ + L QYRM+D I
Sbjct: 442 IISEGAAKAGLSHTLFDRAWPCSVSFTTSSTVTFRMVKMYGDTVRHMLLIQYRMHDKINQ 501
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKP-TWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
W+SKE Y G L + ++VASHLL D P V+ T T+ PL+++DT GC H +
Sbjct: 502 WSSKEFYEGRLQAHASVASHLLRDLPHVQSDTTETKSPLIIVDT--------TGCGFHEE 553
Query: 532 LA------------------------------GTGSFYNEGEAEIVVHHVFSLIC----- 556
+ G GS N+ S+ C
Sbjct: 554 MVEIKNAADRGQNKKGADAAEETKGKRKPMMLGEGSKANQARPTWCT--TTSIHCSNKVP 611
Query: 557 ---AGVSPSAIAVQSPYVAQVQHLRERLDD--LP-----EAAGVEVATIDSFQGREADAV 606
AG+ P I + SPY AQV LR L + +P E +EV+T+D FQGRE + +
Sbjct: 612 PCLAGLRPEDIGIISPYNAQVDRLRHALRERGIPGMEKREMEKIEVSTVDGFQGREKEVI 671
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH--NTFLARLLRHIRYF 664
IIS VRSN G +GFL +SRRMNVAITRA + V VVCD TI H N FL R+ I YF
Sbjct: 672 IISFVRSNQKGEIGFLAESRRMNVAITRAKRSVVVVCDEETINHAKNEFLKRM---IEYF 728
>gi|417303798|ref|ZP_12090840.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica WH47]
gi|327539896|gb|EGF26498.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica WH47]
Length = 735
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 173/458 (37%), Positives = 256/458 (55%), Gaps = 51/458 (11%)
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
Q+ A+A + + II GPPGTGKT + EIIA++V++GERVL A +N AVDN++E+
Sbjct: 287 QRDAVAFAMMAD-DVAIIHGPPGTGKTTTIAEIIAQSVERGERVLACAASNTAVDNLLER 345
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
L + N++RVG+PAR+ ++ +L +V+S S V + DLR++L Q L++ +
Sbjct: 346 LVRLMPNVIRVGHPARVFESLQEHTLDALVESDPTSTVIK------DLRRELDQILREAN 399
Query: 359 LA---AGIR------QLLKQLGK---TLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR 406
G R +L + G+ ++ +E+ V+ V+ A V+ T T D +
Sbjct: 400 RPIREGGGRERKQRAELFNEAGRLRGMIRSQERSIVRAVIDRADVICTTTT--IDEELLS 457
Query: 407 LDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+FDLV R ILAGD CQL P +LS A G+ SL++R
Sbjct: 458 DQSFDLVVVDESCQCTEPGMWQAILRADRLILAGDHCQLPPTVLSDDAARIGMRDSLMQR 517
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
+ + +LT QYRMN++I ++S Y G+LI+ ++V HLL D P V+ T
Sbjct: 518 LVHRYGEKIYRRLTVQYRMNESIMRFSSDHFYDGTLIADASVKRHLLCDLPNVEENDFTS 577
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
PLLL+DT G EE L+ G S N GEA++++ V L GV+ IAV
Sbjct: 578 EPLLLIDT------AGAGYEEELEPDGQ-SKLNHGEAKVILQLVKQLADMGVTGDQIAVI 630
Query: 568 SPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
+PY AQV++LR RLD G+E+ T+D FQGRE + V+I+M RSN G +GFL D RR
Sbjct: 631 APYAAQVRNLRMRLD----LDGIEIDTVDGFQGREKEVVLITMTRSNPDGEIGFLSDQRR 686
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NVA+TRA + + VV DS+T+C++ F + L + G
Sbjct: 687 SNVALTRAKRKLIVVGDSATLCNHEFYSELFSYFEDAG 724
>gi|32471647|ref|NP_864640.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica SH 1]
gi|32397018|emb|CAD72321.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica SH 1]
Length = 763
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 174/458 (37%), Positives = 256/458 (55%), Gaps = 51/458 (11%)
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
Q+ A+A + + II GPPGTGKT + EIIA++V++GERVL A +N AVDN++E+
Sbjct: 315 QRDAVAFAMMAD-DVAIIHGPPGTGKTTTIAEIIAQSVERGERVLACAASNTAVDNLLER 373
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
L + N+VRVG+PAR+ ++ +L +V+S S V + DLR++L Q L++ +
Sbjct: 374 LVRLMPNVVRVGHPARVFESLQEHTLDALVESDPTSTVIK------DLRRELDQILREAN 427
Query: 359 LA---AGIR------QLLKQLGK---TLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR 406
G R +L + G+ ++ +E+ V+ V+ A V+ T T D +
Sbjct: 428 RPIREGGGRERKQRAELFNEAGRLRGMIRSQERSIVRAVIDRADVICTTTT--IDEELLS 485
Query: 407 LDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+FDLV R ILAGD CQL P +LS A G+ SL++R
Sbjct: 486 DQSFDLVVVDESCQCTEPGMWQAILRADRLILAGDHCQLPPTVLSDDAARIGMRDSLMQR 545
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
+ + +LT QYRMN++I ++S Y G+LI+ ++V HLL D P V+ T
Sbjct: 546 LVHRYGEKIYRRLTVQYRMNESIMRFSSDHFYDGTLIADASVKRHLLCDLPNVEENDFTS 605
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
PLLL+DT G EE L+ G S N GEA++++ V L GV+ IAV
Sbjct: 606 EPLLLIDT------AGAGYEEELEPDGQ-SKLNHGEAKVILQLVKQLADLGVTGDQIAVI 658
Query: 568 SPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
+PY AQV++LR RLD G+E+ T+D FQGRE + V+I+M RSN G +GFL D RR
Sbjct: 659 APYAAQVRNLRMRLD----LDGIEIDTVDGFQGREKEVVLITMTRSNPDGEIGFLSDQRR 714
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NVA+TRA + + VV DS+T+C++ F + L + G
Sbjct: 715 SNVALTRAKRKLIVVGDSATLCNHEFYSELFGYFEDAG 752
>gi|440713093|ref|ZP_20893698.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica SWK14]
gi|436442112|gb|ELP35280.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica SWK14]
Length = 735
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 173/458 (37%), Positives = 256/458 (55%), Gaps = 51/458 (11%)
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
Q+ A+A + + II GPPGTGKT + EIIA++V++GERVL A +N AVDN++E+
Sbjct: 287 QRDAVAFAMMAD-DVAIIHGPPGTGKTTTIAEIIAQSVERGERVLACAASNTAVDNLLER 345
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
L + N+VRVG+PAR+ ++ +L +V+S S V + DLR++L Q L++ +
Sbjct: 346 LVCLMPNVVRVGHPARVFESLQEHTLDALVESDPTSTVIK------DLRRELDQILREAN 399
Query: 359 LA---AGIR------QLLKQLGK---TLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR 406
G R +L + G+ ++ +E+ V+ V+ A V+ T T D +
Sbjct: 400 RPIREGGGRERKQRAELFNEAGRLRGMIRSQERSIVRAVIDRADVICTTTT--IDEELLS 457
Query: 407 LDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+FD+V R ILAGD CQL P +LS A G+ SL++R
Sbjct: 458 DQSFDVVVVDESCQCTEPGMWQAILRADRLILAGDHCQLPPTVLSDDAARIGMRDSLMQR 517
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
+ + +LT QYRMN++I ++S Y G+LI+ ++V HLL D P V+ T
Sbjct: 518 LVHRYGEKIYRRLTVQYRMNESIMRFSSDHFYDGTLIADASVKRHLLCDLPNVEENDFTS 577
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
PLLL+DT G EE L+ G S N GEA++++ V L GV+ IAV
Sbjct: 578 EPLLLIDT------AGAGYEEELEPDGQ-SKLNHGEAKVILQLVKQLADMGVTGDQIAVI 630
Query: 568 SPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
+PY AQV++LR RLD G+E+ T+D FQGRE + V+I+M RSN G +GFL D RR
Sbjct: 631 APYAAQVRNLRMRLD----LDGIEIDTVDGFQGREKEVVLITMTRSNPDGEIGFLSDQRR 686
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NVA+TRA + + VV DS+T+C++ F + L + G
Sbjct: 687 SNVALTRAKRKLIVVGDSATLCNHEFYSELFGYFEDAG 724
>gi|344295466|ref|XP_003419433.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2-like
[Loxodonta africana]
Length = 931
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 175/421 (41%), Positives = 240/421 (57%), Gaps = 49/421 (11%)
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEF 339
+VL AP+N AVDN+VE+L+ ++R+G+PAR+ ++ SL ++ +S A VA
Sbjct: 164 KVLCCAPSNIAVDNLVERLAHCEQRVLRLGHPARLLESIQQHSLDAVLARSDSAQIVA-- 221
Query: 340 ERKKSDLRKDLRQCL------KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
D+RK++ Q +D R LKQL K LK++E+ + + L+SA VVL
Sbjct: 222 -----DIRKEIDQVFVKNKKTQDKREKGNFRNELKQLRKELKEREEAAMLQSLTSAHVVL 276
Query: 394 ATNTGAA-DPLIRRL--DTFDLV-------------------GKRCILAGDQCQLAPVIL 431
ATNTGA+ D ++ L FD+V ++CILAGD QL P ++
Sbjct: 277 ATNTGASSDGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTVI 336
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
S KA G+ +SL+ER A H LT QYRM+DAI+ WAS+ +YGG L + +VA
Sbjct: 337 SHKAGLAGLSLSLMERLAEQHGERAVRLLTVQYRMHDAISQWASEALYGGQLTAHPSVAQ 396
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHH 550
HLL D P V PT T PLLL+DT GC LD S N GE +V H
Sbjct: 397 HLLRDLPGVAPTEETAVPLLLIDT--------AGCGLFELDEEEEQSRGNPGEVRLVSLH 448
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIIS 609
V +L+ AGV IAV +PY QV LR+ L PE +E+ ++D FQGRE +AVI+S
Sbjct: 449 VQALVDAGVPARDIAVITPYNLQVDLLRQSLAHRYPE---LEMKSVDGFQGREKEAVILS 505
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKH 669
VRSN G VGFL + RR+NVA+TRA +HVA+VCDS T+ ++ FL L+ + G V+
Sbjct: 506 FVRSNRKGEVGFLAEDRRINVAVTRARRHVAIVCDSRTVTNHAFLKTLVGYFTEHGEVRT 565
Query: 670 A 670
A
Sbjct: 566 A 566
>gi|327260153|ref|XP_003214900.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2-like
[Anolis carolinensis]
Length = 997
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 218/646 (33%), Positives = 316/646 (48%), Gaps = 98/646 (15%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG---NHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L + S TGL G LV + LP + PGD+V + +G ++
Sbjct: 46 LLKLEIASQRTGLYGRFLVTLQPRKCGLQAELPSNSFGPGDIVGLYETAGQGDQLST--- 102
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V + T+++ +P S L R+ LA+ +TY+R AL L +
Sbjct: 103 GIVTRITAKSVTVAI------DEPQSSLLSLDQGNTYRLLKLANDVTYKRLKRALNTLSQ 156
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL- 247
++ P+ + LF E +D + + ++ T S+K AL
Sbjct: 157 ---YRSGPASGLIDVLFCASEP---------SDANNTMVYPLIFLTRCCSRKTIQALLFC 204
Query: 248 ------------NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
+ +PL I T K L K VL AP+N AVDN+
Sbjct: 205 CLXLHADFVSVYSXSKPLEISSNCRETLKMFLFK------------VLCCAPSNIAVDNL 252
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL 354
VE+L+ I+R+G+PAR+ ++ SL I+ A VA D+RKD+ Q
Sbjct: 253 VERLASHKARILRLGHPARLLESIQQHSLDAILAHGDNAQIVA-------DIRKDIDQAF 305
Query: 355 ------KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL 407
+D + +K L K LK++E+ + E+L+ A V+LATNTGA+ D ++ L
Sbjct: 306 VKNRKTQDKGERSHFLNEIKTLRKELKEREEMAMTEILTHADVILATNTGASSDGPLKLL 365
Query: 408 --DTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLE 446
+ FD+V K+C+LAGD QL P I+S KA G+ +SL+E
Sbjct: 366 PENHFDMVVIDECSQALEASCWIPLLKAKKCVLAGDHKQLPPTIISHKAASKGLSLSLME 425
Query: 447 RAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWIT 506
R + + LT QYRM+ I WAS EMY G L++ +VA HLL D P V T T
Sbjct: 426 RLIEKYGDRVVKMLTVQYRMHQDIMQWASTEMYDGRLLAHHSVAQHLLKDLPGVASTEET 485
Query: 507 QCPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIA 565
PLLL+DT GC LD+ S N+GE +V H+ +L+ AGV IA
Sbjct: 486 SIPLLLIDT--------AGCGLFELDVEDEQSKGNQGEVRLVGLHIQALVDAGVKARDIA 537
Query: 566 VQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
V +PY QV LRE L + PE +E+ ++D FQGRE +AV++S VRSN G VGFL +
Sbjct: 538 VITPYNLQVDMLRELLCQNYPE---LEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAE 594
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
RR+NVAITRA +HVAV+CDS T +++FL RL+ ++ G V+ A
Sbjct: 595 DRRINVAITRARRHVAVICDSRTTGNHSFLKRLVDYMNEHGEVRTA 640
>gi|449131912|ref|ZP_21768086.1| DNA-binding protein SMUBP-2 [Rhodopirellula europaea 6C]
gi|448888721|gb|EMB19023.1| DNA-binding protein SMUBP-2 [Rhodopirellula europaea 6C]
Length = 734
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 173/458 (37%), Positives = 255/458 (55%), Gaps = 51/458 (11%)
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
Q+ A+A + + II GPPGTGKT + EIIA++V++GERVL A +N AVDN++E+
Sbjct: 286 QRDAVAFAMMAD-DVAIIHGPPGTGKTTTIAEIIAQSVERGERVLACAASNTAVDNLLER 344
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
L + N+VRVG+PAR+ ++ +L +V+S S V + DLR++L Q L++ +
Sbjct: 345 LVRLMPNVVRVGHPARVFESLQEHTLDALVESDPTSTVIK------DLRRELDQILREAN 398
Query: 359 ---LAAGIR------QLLKQLGK---TLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR 406
A G R +L + G+ ++ +E+ V+ V+ A V+ T T D +
Sbjct: 399 RPIRAGGGRERKQRSELFNEAGRLRGMIRSQERGIVRSVIDRADVICTTTT--IDEELLS 456
Query: 407 LDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+FDLV R ILAGD CQL P +LS A + G+ SL++R
Sbjct: 457 DQSFDLVVVDESCQCTEPGMWQAILRADRLILAGDHCQLPPTVLSDDAAKIGMRDSLMQR 516
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
+ + +LT QYRMN++I ++S Y +LI+ ++V H L D P V+ T
Sbjct: 517 LVHRYGERIYRRLTVQYRMNESIMRFSSDHFYDSTLIADASVKRHRLCDLPNVEENDFTT 576
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
PLLL+DT G EE L+ G S N GEA++++ V L GV+ IAV
Sbjct: 577 EPLLLIDT------AGAGYEEELEPDGQ-SKLNHGEAKVILQLVKQLADMGVTGDQIAVI 629
Query: 568 SPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
+PY AQV++LR RLD G+E+ T+D FQGRE + V+I+M RSN G +GFL D RR
Sbjct: 630 APYAAQVRNLRMRLD----LDGIEIDTVDGFQGREKEVVLITMTRSNPDGEIGFLSDQRR 685
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NVA+TRA + + VV DS+T+C + F + L + G
Sbjct: 686 SNVALTRAKRKLIVVGDSATLCSHDFYSDLYGYFEDAG 723
>gi|421612070|ref|ZP_16053189.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica SH28]
gi|408497130|gb|EKK01670.1| DNA-binding protein SMUBP-2 [Rhodopirellula baltica SH28]
Length = 734
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 173/458 (37%), Positives = 255/458 (55%), Gaps = 51/458 (11%)
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
Q+ A+A + + II GPPGTGKT + EIIA++V++GERVL A +N AVDN++E+
Sbjct: 286 QRDAVAFAMMAD-DVAIIHGPPGTGKTTTIAEIIAQSVERGERVLACAASNTAVDNLLER 344
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
L + N+VRVG+PAR+ ++ +L +V+S S V + DLR++L Q L++ +
Sbjct: 345 LVRLMPNVVRVGHPARVFESLQEHTLDALVESDPTSTVIK------DLRRELDQILREAN 398
Query: 359 ---LAAGIR------QLLKQLGK---TLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR 406
A G R +L + G+ ++ +E+ V+ V+ A V+ T T D +
Sbjct: 399 RPIRAGGGRERKQRSELFNEAGRLRGMIRSQERGIVRSVIDRADVICTTTT--IDEELLS 456
Query: 407 LDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+FDLV R ILAGD CQL P +LS A + G+ SL++R
Sbjct: 457 DQSFDLVVVDESCQCTEPGMWQAILRADRLILAGDHCQLPPTVLSDDAAKIGMRDSLMQR 516
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
+ + +LT QYRMN++I ++S Y +LI+ ++V H L D P V+ T
Sbjct: 517 LVHRYGERIYRRLTVQYRMNESIMRFSSDHFYDSTLIADASVKRHRLCDLPNVEENDFTT 576
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
PLLL+DT G EE L+ G S N GEA++++ V L GV+ IAV
Sbjct: 577 EPLLLIDT------AGAGYEEELEPDGQ-SKLNYGEAKVILQLVKQLADMGVTGDQIAVI 629
Query: 568 SPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
+PY AQV++LR RLD G+E+ T+D FQGRE + V+I+M RSN G +GFL D RR
Sbjct: 630 APYAAQVRNLRMRLD----LDGIEIDTVDGFQGREKEVVLITMTRSNPDGEIGFLSDQRR 685
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NVA+TRA + + VV DS+T+C + F + L + G
Sbjct: 686 SNVALTRAKRKLIVVGDSATLCSHDFYSDLFGYFEDAG 723
>gi|301116633|ref|XP_002906045.1| DNA polymerase alpha-associated DNA helicase A, putative
[Phytophthora infestans T30-4]
gi|262109345|gb|EEY67397.1| DNA polymerase alpha-associated DNA helicase A, putative
[Phytophthora infestans T30-4]
Length = 988
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 211/642 (32%), Positives = 319/642 (49%), Gaps = 68/642 (10%)
Query: 70 DTICNLFVVSTSTGLGGMHLVLFRVEGN--HRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ + +L + STGL G L+ F + P + GD+V +R
Sbjct: 58 NVLTHLTLARYSTGLFGRTLLQFSFPSLSLRQAKPHQFTVGDLVQIR-AQKNTLTGAKLP 116
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKS--VRIDRIQGLADTLTYERNCEALML 185
G V + E G ISVA+ S D +L + V +DR L + T+ + AL
Sbjct: 117 TGIVSRVEERG--ISVAVNSDQEDVDEVELLTATAGVTLDR---LVNNATFLKLTSALDQ 171
Query: 186 LQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIAL 245
+ K + V +F ++E +W L D + ++SQ +A+
Sbjct: 172 MTKFEF---GAAQTVVDVVFSEREP-SW--NTPLPDITP------FNTGLNESQVEAVRF 219
Query: 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDV-- 302
L K L +I GPPGTGKT + E I +AV + + +VLV AP+N AVDN+++KL+
Sbjct: 220 ALASK-DLALIHGPPGTGKTTTVVEFILQAVTRFDLKVLVCAPSNIAVDNVLDKLASTCS 278
Query: 303 ----GLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
L + R+G+PAR+ P + + L +I ++ V + ++ S ++K L Q +D
Sbjct: 279 TLRKKLKLTRIGHPARVLPQILNYCLDAKIESAEGTEIVNDIRQEMSSMQKKL-QKTRDK 337
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
S +R+ +K K ++ +E++ V +++ + VV ATN GAA L++ + TFDLV
Sbjct: 338 SERYRLRREMKANRKEIRTREQKVVGDIIRHSDVVFATNVGAASKLLKDV-TFDLVIIDE 396
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL-HEGVLA 457
KRC+LAGD QL P I SR A G+ V+L +R + + +
Sbjct: 397 AAQALEASCWIPMLKAKRCVLAGDHLQLPPTIKSRAAAAKGLEVTLFDRVTSYTNTQSIV 456
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
L TQYRM+ I+ W+S+ MY G L S VA L + P V + + L
Sbjct: 457 KMLDTQYRMHQDISEWSSQAMYKGELKSFEGVARRKLHELPHVSISKEDELLDATL---- 512
Query: 518 PYGSLSLGCEEHLDLAGTG--------SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
+ GCE D S NEGEA +V HV +L+ AG+ +AV +P
Sbjct: 513 -LLLDTAGCELEEDAKDEEKASSTLQLSKSNEGEAHVVARHVSALLKAGLKEEEVAVITP 571
Query: 570 YVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
Y QVQ L+ L L +E+ ++D FQG E +AV++S+VRSN VGFL D RRMN
Sbjct: 572 YNKQVQTLKALL--LESYPKLEIRSVDGFQGCEKEAVVMSLVRSNASRQVGFLADDRRMN 629
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
VAITRA +HVAVVCD+ TI + FL+ L++H +G + A+
Sbjct: 630 VAITRAKRHVAVVCDTDTISSHKFLSGLVKHFEKYGEYRSAQ 671
>gi|407927432|gb|EKG20325.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 686
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 210/662 (31%), Positives = 337/662 (50%), Gaps = 79/662 (11%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE-----GNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
I NL + S TGLGG +V ++ LP + GD+V V+ + A
Sbjct: 48 ILNLQIASQRTGLGGKTVVELELDPAVKGAGAELPEHGIRTGDIVGVQ--EQPAGSARKK 105
Query: 127 IQGFVHNLGEDGCT-------ISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERN 179
+ + G DG +SVAL+ D KL+ + LA+ +TY+R
Sbjct: 106 EKSELKKNGVDGVVLKVNATAVSVALDKEDVDVPQGKLW--------LVKLANDVTYKRM 157
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGI--MGKTFDD 237
+ + LQ + P I A LFG ++ L N +SEV LD + + + +D
Sbjct: 158 TQTMTRLQNFSESEYTPFIRA---LFG-LSSLSPLPSN----YSEVGLDKLQWIDPSLND 209
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQK AI + R + +I GPPGTGKT L E+I + ++Q R+LV P+N +VDN+VE
Sbjct: 210 SQKDAIRFAM-ASREVALIHGPPGTGKTHTLIELILQLLKQDLRLLVCGPSNISVDNIVE 268
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
+L+ + I+R+G+PAR+ P+V + SL + ++ A+ + + RK+ D ++ + ++
Sbjct: 269 RLAPHKVPIIRLGHPARLLPSVINHSLDVLTRTSDAAAIVQDIRKEMDAKQASIKKTRNG 328
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
I +++L K +++E+ V +++ ++VVLAT GA ++ FD+V
Sbjct: 329 RERKAIYSEMRELRKDYRERERRCVDQLVKGSKVVLATLHGAGGYHLKD-QQFDVVIIDE 387
Query: 414 ---------------GKRCILAGDQCQLAPVI------------LSRKALEGGIGVS--- 443
K+ +LAGD QL P I S KA + G S
Sbjct: 388 ASQALEAQCWVPLLSAKKVVLAGDHLQLPPTIKSLNSKTQKESETSDKAAQKERGKSVTL 447
Query: 444 ---LLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF- 499
L +R LH + LTTQYRM++ I ++ S+E+Y L+++ +V + LL D P+
Sbjct: 448 EQTLFDRLLALHGPSIKRMLTTQYRMHEKIMAFPSQELYESKLVAAESVKARLLADLPYE 507
Query: 500 VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
V+ T T+ P++ DT+ P S + L G S NE EA +V HV L+
Sbjct: 508 VQETEDTREPVVFWDTQGGDFPEKSEDEDTGKKSSLLGD-SKSNEMEAALVRLHVGKLVE 566
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
AGV IAV +PY AQ+ L + L + + AG+E+ ++D FQGRE +AV++S+VRSN
Sbjct: 567 AGVRAEDIAVVTPYNAQLAVLSQLLKE--QFAGIELGSVDGFQGREKEAVVVSLVRSNAE 624
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
VGFLG+ RR+NVA+TR +H+ V+ DS T+ + FL R + ++ +++ +
Sbjct: 625 HEVGFLGEKRRLNVAMTRPKRHLCVIGDSETVGRGSRFLKRWMDFLQEQADLRYPDGAEL 684
Query: 676 GG 677
G
Sbjct: 685 YG 686
>gi|168705200|ref|ZP_02737477.1| DNA-binding protein SMUBP-2 [Gemmata obscuriglobus UQM 2246]
Length = 766
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 201/656 (30%), Positives = 317/656 (48%), Gaps = 80/656 (12%)
Query: 71 TICNLFVVSTSTGLGGMHLVLF-RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
T+ L + + GLGG L+ F R N LPP+ L PG V + + + +G
Sbjct: 120 TLTKLVLRDSEFGLGGRLLLTFGRKTLNEPLPPSRLGPGAPVLLSQTNVNRRVPS--YRG 177
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLF--------------------GKSVRIDRIQG 169
+++ D TI VA++ D ++ S DR+
Sbjct: 178 VIYD--RDTATIGVAIDPPDDDLPDEAVWRLDLSPDEVSRLRQQDALRRAASATGDRLAQ 235
Query: 170 LADTLTYERNCEALMLLQKNGLH--------KRNPSIAAVVTLFGDKEDVTWLEENDLAD 221
L + L ER L + G + NP + + G +++ +
Sbjct: 236 LREVLLGERPTPPAPLPKGKGEEGGPLPEGSEDNPPPSPLPEGMGSEDEPPTTSDTPSVS 295
Query: 222 W--SEVKLDGIMG----KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA 275
S L G G T ++ Q+ A+A L II GPPGTGKT + E I +
Sbjct: 296 GASSPPSLQGGAGGRSPSTLNEPQRDAVAFALAAPD-FAIIHGPPGTGKTTTVVEFIRKL 354
Query: 276 VQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKS----- 330
V +G++VL AP+N AVDN++EKL VG VR+G+PAR+ P + ++++ + +
Sbjct: 355 VARGDKVLACAPSNHAVDNLLEKLLGVGELPVRLGHPARVMPELRARAIDILAEKHPDAR 414
Query: 331 ---KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLS 387
K+A R+ ++ Q + +L R++L ++ ++ E + VL
Sbjct: 415 QARKVAREAFALFRQADKWTREKPQPGEKAALRKEAREMLTEV----RRLEASATERVLD 470
Query: 388 SAQVVLATNTGAADPLI--RRLDTFD----------------LVGKRCILAGDQCQLAPV 429
A+VV AT TG L+ RR D L + +LAGD CQL P
Sbjct: 471 EARVVCATLTGLDSQLLGQRRFDVVVIDEACQSTEPAAWVPLLRANKVVLAGDHCQLPPT 530
Query: 430 ILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTV 489
+LS +A E G+ VSL+ER + LT Q+RM+ A+ +++ E Y L++ +V
Sbjct: 531 VLSPEAAERGLSVSLMERLVRQFGPGASRLLTVQHRMHAAVMGFSNGEFYDSQLVAHESV 590
Query: 490 ASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVH 549
A+HLL P V +T+ P+ +DT +E L+ TGS +N EA + V
Sbjct: 591 AAHLLCHLPGVARDPLTETPVQFIDT------AGASYDEELE-EDTGSRFNAQEATLAVK 643
Query: 550 HVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIIS 609
V +L+ G++PS I + +PY AQV+ LRE+L D+P G+E+ ++D FQGRE +A+++S
Sbjct: 644 KVRALLALGIAPSQIGLITPYRAQVRLLREKLADVP---GLEIDSVDGFQGREKEAIVVS 700
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+VRSN G +GFL D+RR NVA TRA + + V+ DS+T+ + F R+L + G
Sbjct: 701 LVRSNNEGEIGFLSDTRRTNVAFTRARRKLLVIGDSATLASDPFYQRMLTYFEQIG 756
>gi|432091028|gb|ELK24240.1| DNA-binding protein SMUBP-2 [Myotis davidii]
Length = 948
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 214/605 (35%), Positives = 299/605 (49%), Gaps = 75/605 (12%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L V S TGL G LV F R LP + S GD+V + D G AT +
Sbjct: 286 LLKLQVSSQRTGLYGQLLVTFEPPRCASAGVLPSNSFSSGDVVGLN--DEGGQLATGVLT 343
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
+++VA + S+L R+ LA+ +TY+R +AL+ L+K
Sbjct: 344 RITQK------SVTVAFDQS----CDSQLSFDQQNSYRLLKLANDVTYKRLKKALIALKK 393
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
+ P+ + + LFGD + + + D SQ++A++ L
Sbjct: 394 ---YHTGPAFSLIEVLFGDAAP---------SPAGDTRAPTFYNAALDASQQEAVSFALA 441
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+K L II GPPGTGKT + E I +AV+QG +VL AP+N AVDN+V
Sbjct: 442 QKE-LAIIHGPPGTGKTTTVVEFILQAVKQGCKVLCCAPSNIAVDNLVXX------XXXX 494
Query: 309 VGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
+PAR+ AV SL ++ +S A VA D+R+D+ Q S+ A L
Sbjct: 495 XXHPARLLEAVQQHSLDAVLARSDGAQIVA-------DIRRDIDQV----SVRASPDGPL 543
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLA 427
K L + +V+ + A PL++ ++C+LAGD QL
Sbjct: 544 KLL--------PDGYFDVVVIDECAQALEASCWVPLLK--------ARKCVLAGDHKQLP 587
Query: 428 PVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSS 487
P I+S KA G+ +SL+ER A LT QYRM+ AI WAS+ +Y G L +
Sbjct: 588 PTIVSPKAALAGLSLSLMERLAQGCCAGAVRTLTVQYRMHRAIMQWASEALYRGQLTAHP 647
Query: 488 TVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFYNEGEAEI 546
+VA HLL D P V T T PLLL+DT GC L+ S N GE +
Sbjct: 648 SVAEHLLRDLPGVAATEETGLPLLLVDT--------AGCGLSELEEEEDQSKGNPGEVRL 699
Query: 547 VVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-PEAAGVEVATIDSFQGREADA 605
V HV +L+ AGV S IAV +PY QV LR+ L PE +E+ ++D FQGRE +A
Sbjct: 700 VSLHVQALVDAGVPASDIAVITPYNLQVDLLRQSLAHRHPE---LEIKSVDGFQGREKEA 756
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
V++S VRSN G VGFL + RR+NVAITRA +HVA+VCDS T+ + FL L+ + G
Sbjct: 757 VVLSFVRSNRRGEVGFLAEDRRINVAITRARRHVAIVCDSRTVSSHAFLKTLVDYFAEHG 816
Query: 666 RVKHA 670
V+ A
Sbjct: 817 EVRTA 821
>gi|223994041|ref|XP_002286704.1| hypothetical protein THAPSDRAFT_31575 [Thalassiosira pseudonana
CCMP1335]
gi|220978019|gb|EED96345.1| hypothetical protein THAPSDRAFT_31575 [Thalassiosira pseudonana
CCMP1335]
Length = 497
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 182/489 (37%), Positives = 264/489 (53%), Gaps = 72/489 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
D SQK+A+ + L+ P+ +I GPPGTGKT + E+I AV +G +VLVTAP+N AVD
Sbjct: 15 LDYSQKEAVVMALSGS-PINLIHGPPGTGKTTTVAELIRCAVNNKGWKVLVTAPSNVAVD 73
Query: 294 NMVEKL---SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL 350
N++ +L + VR+G+PARI + SL +V+S + + R S+L L
Sbjct: 74 NVLGRLIINKQRKIKAVRLGHPARIQNGIQKYSLESLVQSSEGTEIVRDCR--SELNAHL 131
Query: 351 RQCLKDDSLAAGIR---QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL 407
R S + R + +K L K ++ +E++ V E+L+ A VVLATN GAA + RR+
Sbjct: 132 RTLASAKSRPSEKRIAYREMKSLRKEIRTREEKVVGEILTLANVVLATNVGAAGSVFRRM 191
Query: 408 -DT------FDLV-------------------GKRCILAGDQCQLAPVILSR-KALEGGI 440
D+ FDLV GKR ILAGD QL P I S + ++ +
Sbjct: 192 VDSKGGAIEFDLVIIDEAAQALEASCWISLLRGKRAILAGDHNQLPPTIKSSVREVQYNL 251
Query: 441 GVSLLERAATLHEG-------VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
G +L ER ++ + L QYRM++ +++WAS MY G L+S +V
Sbjct: 252 GRTLFERLMNAYDSDKTGQPKSCSKMLEVQYRMHEDVSNWASNAMYDGKLVSHESVRHRK 311
Query: 494 LVDTPFVKP-------------TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540
L P V+ T + LLL+DT GC+ H GS YN
Sbjct: 312 LASLPQVEEQLKATNKDIAEDGTGLQNVTLLLVDT--------TGCDMHEMTTDAGSRYN 363
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER-LDDLPEAAGVEVATIDSFQ 599
EGEA+IVV HV SLI G+ IAV +PY QV+ LR+R L D+P+ +E+ ++D FQ
Sbjct: 364 EGEADIVVSHVHSLISLGLRAEDIAVITPYNGQVELLRKRLLTDIPK---LEIRSVDGFQ 420
Query: 600 GREADAVIISMVRSNTLG---AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLAR 656
G E +AV++S+VRS+ G +GFL D RR+NVA+TRA +H AV+CD T+ ++F+
Sbjct: 421 GGEREAVVLSLVRSSEKGGKDGIGFLRDERRLNVAVTRAKRHCAVICDCETVSQSSFIKG 480
Query: 657 LLRHIRYFG 665
L+ + G
Sbjct: 481 LIEWMEAKG 489
>gi|440634913|gb|ELR04832.1| DNA helicase [Geomyces destructans 20631-21]
Length = 674
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 218/640 (34%), Positives = 329/640 (51%), Gaps = 85/640 (13%)
Query: 72 ICNLFVVSTSTGLGG---MHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
I NL + S TGLGG + L L G LP + GD+V V G A S +
Sbjct: 47 ITNLVIASQRTGLGGKTVLELSLDSAIGEGDLPEHGVRVGDIVMVA-----GQPAGSAKK 101
Query: 129 GFVHNLGEDG----------CTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYER 178
V L E+G + VA+E + G + I + LA+ +TY+R
Sbjct: 102 REVKELEENGGRGVVTKVGRAVVGVAME------REEEEVGGRLWIVK---LANDVTYKR 152
Query: 179 NCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLE---ENDLADWSEVKLDGIMGKTF 235
+ + LQK +++ + S A + LFG E E + +W + L+
Sbjct: 153 MNQTMEKLQK--INEASYS-AFLRVLFGLSSPSPVHESPKEAEKIEWIDTSLN------- 202
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
DSQK AI L R + +I GPPGTGKT L E+I + V+ RVLV P+N +VDN+
Sbjct: 203 -DSQKDAIKFAL-ASREVALIHGPPGTGKTHTLIELILQLVKLKLRVLVCGPSNISVDNI 260
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
VE+LS L I+R+G+PAR+ P+V + SL + ++ A+ + RK+ D ++ + K
Sbjct: 261 VERLSPHKLPILRLGHPARLLPSVLNHSLDILTQTSDAAAIVRDVRKEMDSKQASLRKTK 320
Query: 356 DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-- 413
GI L++L K +++EK+ V ++ ++VVLAT GA +R + FD+V
Sbjct: 321 SGRERRGIYGELRELRKEFREREKKCVANLVMGSKVVLATLHGAGGFQLRG-EQFDVVLI 379
Query: 414 -----------------GKRCILAGDQCQLAPVI-------LSRKALEGGIGV--SLLER 447
+ +LAGD QL P I S++ + G+ + +L +R
Sbjct: 380 DEASQALEAQCWVPLLQADKVVLAGDHLQLPPTIKSLNSKVKSKEVIIKGMTLETTLFDR 439
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWIT 506
+H + LTTQYRM++ I + S E+Y G LI++ V + LL D P+ V+ T T
Sbjct: 440 LLAMHGEGIKRMLTTQYRMHETIMRFPSDELYEGKLIAAEAVKARLLTDLPYEVQDTEDT 499
Query: 507 QCPLLLLDTR---LPYGSLSLGCEEHLDLAGTG----SFYNEGEAEIVVHHVFSLICAGV 559
+ PL+ DT+ P S G + AG G S NE EA +V HV +L+ AGV
Sbjct: 500 REPLVFWDTQGGDFPEASEEEGVSKK---AGKGLMGESKSNEMEAVLVKLHVKNLVKAGV 556
Query: 560 SPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAV 619
P IAV +PY AQ+ + L + E G+E+ ++D FQGRE +A+I+S+VRSN G V
Sbjct: 557 KPEDIAVVTPYNAQLALMSGPLKE--EFPGIELGSVDGFQGREKEAIIVSLVRSNGDGEV 614
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLL 658
GFLG+ RR+NVA+TR +H+ V+ D+ T+ + FL R +
Sbjct: 615 GFLGEKRRLNVAMTRPRRHLCVIGDAETVAKGSGFLKRWM 654
>gi|384498945|gb|EIE89436.1| hypothetical protein RO3G_14147 [Rhizopus delemar RA 99-880]
Length = 608
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 169/460 (36%), Positives = 255/460 (55%), Gaps = 57/460 (12%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAA 291
+T +DSQK+A+ L + +I GPPGTGKT L EII A+ Q ++VLV P+N +
Sbjct: 130 ETLNDSQKEAVRFALGSPE-IALIHGPPGTGKTYTLVEIIRHLAINQKQKVLVCGPSNIS 188
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
VDN+VE+L+ L +VRVG+PAR+ P V +L I ++ + R SD+RK++
Sbjct: 189 VDNLVERLAQHRLQVVRVGHPARVLPTVVDHTLDIITRT------CDSGRIVSDIRKEMD 242
Query: 352 QCL------KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD-PLI 404
L K+ + + L+K L K + +E+ ++EVL++AQV ++T GAA ++
Sbjct: 243 DTLAKIGKSKNRTERRAMYGLMKDLRKDFRVRERRVIEEVLTNAQVTISTLNGAASRNMM 302
Query: 405 RRLDTFDLV-------------------GKRCILAGDQCQLAP-----------VILSRK 434
R FD+V K+ ILAGD QL P +IL RK
Sbjct: 303 NR--EFDVVIIDEATQALEAECWIALLKAKKAILAGDHLQLPPTVKSPVKIGKKMILKRK 360
Query: 435 AL--EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH 492
L + + +L +R +++ + L QYRM+ I ++SKE+Y LI+ ++VA H
Sbjct: 361 GLPTDTDLTTTLFDRLLSMYNNKIKRMLMVQYRMHQKIMEFSSKELYENKLIADASVAEH 420
Query: 493 LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVF 552
+L D P V+ T T PL+++DT L E D S NE E E+ V H+
Sbjct: 421 VLADLPDVESTENTDMPLVIIDT----SDTGLSHEVTDDAQEEQSKANELEVELAVRHIK 476
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMV 611
+L+ G+ I V +PY QV LR + ++ P G+EV T+D FQGRE +A+++S+V
Sbjct: 477 TLLNDGLQQDQIGVITPYAFQVSKLRREIRENWP---GIEVGTVDGFQGREKEAILLSLV 533
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
RSN +G VGFL + RR+NVA+TRA +H+ V+CDS T+ N
Sbjct: 534 RSNDIGEVGFLAEKRRLNVAMTRAKRHLCVICDSETLLGN 573
>gi|153007203|ref|YP_001381528.1| superfamily I DNA/RNA helicase [Anaeromyxobacter sp. Fw109-5]
gi|152030776|gb|ABS28544.1| superfamily I DNA and RNA helicase [Anaeromyxobacter sp. Fw109-5]
Length = 651
Score = 258 bits (659), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 179/446 (40%), Positives = 236/446 (52%), Gaps = 51/446 (11%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
L ++ GPPGTGKT +L E+I RAV +GE+VL TAP+N AVDN+VE+L+ G+ VRVG+P
Sbjct: 221 LALVHGPPGTGKTTVLVEVIRRAVARGEKVLATAPSNLAVDNLVERLAAAGVRCVRVGHP 280
Query: 313 ARISPAVASKSLGEIVKSKLASFVA----EFERKKSDLRKDLRQCLKDDSLAAGIRQL-- 366
AR+ PAV S +L + +S A+ +A E RQ +A Q
Sbjct: 281 ARVLPAVLSHTLEALTESHEAARIARGLVEEAIALRRSAARRRQKRGPGRFSASREQERD 340
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRLDTFD-------------- 411
+ L + E EVL A+VVL+T TG A PL RR T
Sbjct: 341 ARALFAEARTLEARAEGEVLDRAEVVLSTLTGLDAPPLARRRFTLAVADEATQAVEPALY 400
Query: 412 ---LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
L +R +LAGD QL P +LS A GG+GVSL ER LH + L Q+RMN
Sbjct: 401 LALLRAERAVLAGDHLQLPPTVLSGAAQAGGLGVSLFERLVALHGDAIKVTLAEQHRMNA 460
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
I ++ S+ +YGG+L + VA I PL ++DT G EE
Sbjct: 461 RIMAFPSEALYGGALRAHPAVAERA-----------IDGAPLEVVDT------AGRGFEE 503
Query: 529 HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE----RLDDL 584
G+ S N GEA +V V +L+ G+ P+ +AV SPY AQVQ LR+ LD
Sbjct: 504 ETP-EGSDSKQNAGEAALVAGEVEALLAQGLDPAEVAVISPYDAQVQRLRQLLAAHLDR- 561
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
G+EV T+D FQGRE DAV++S+VR+N G VGFL D RRMNVA+TRA + VV D
Sbjct: 562 ----GLEVDTVDGFQGREKDAVVVSLVRANETGEVGFLADVRRMNVALTRARMKLVVVGD 617
Query: 645 SSTICHNTFLARLLRHIRYFGRVKHA 670
+T+ + F AR L H G + A
Sbjct: 618 GATVARHPFYARFLSHAEASGAWRSA 643
>gi|197124729|ref|YP_002136680.1| superfamily I DNA and RNA helicase [Anaeromyxobacter sp. K]
gi|196174578|gb|ACG75551.1| superfamily I DNA and RNA helicase [Anaeromyxobacter sp. K]
Length = 622
Score = 258 bits (658), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 179/465 (38%), Positives = 245/465 (52%), Gaps = 44/465 (9%)
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
++ + Q+ A+ L ++ L ++ GPPGTGKT +L E+I RA +GE VL AP+N
Sbjct: 175 VLEARLNPEQQAALDLA-DRAEDLALVHGPPGTGKTTVLVEVIRRAAARGESVLAAAPSN 233
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE-FERKKSDLRK 348
AVDN+VE+L+ GL VRVG+PAR+ P + +L V++ A+ +A+ + LR+
Sbjct: 234 LAVDNLVERLAAAGLACVRVGHPARVLPGLLEHTLEARVEAHEAARIAQGLVDQALALRR 293
Query: 349 DLRQCLKDD-----SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPL 403
D R+ + S + + + L ++ E EVL AQVVLAT T P
Sbjct: 294 DARKRRQKRGPGRFSASREQEREARALLAEARRLEARAEAEVLERAQVVLATLTSLDGPA 353
Query: 404 I--RR--LDTFD--------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
+ RR L D L R +LAGD QL P +LS A EGG+GVSL
Sbjct: 354 LAGRRFALAVLDEATQAVEPAAYLALLRADRAVLAGDHLQLPPTVLSAAAQEGGLGVSLF 413
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI 505
ER H L Q+RMN I ++ S+ +YGG+L + A + D PF
Sbjct: 414 ERLVEAHGDRARVMLAEQHRMNARIMAFPSEALYGGALRAHPAAAGRAIDDAPFE----- 468
Query: 506 TQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIA 565
L+DT G EE G+ S N GEAE+ V L+ AG++P +A
Sbjct: 469 ------LVDTS------GRGFEEETP-EGSDSKQNTGEAELAAAEVRRLLAAGLAPGDVA 515
Query: 566 VQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
V SPY AQVQ LR+ L + E AG+EV T+D FQGRE +AV++S+VRSN G VGFL D
Sbjct: 516 VISPYDAQVQRLRQLLAEEVE-AGLEVDTVDGFQGREKEAVVVSLVRSNEAGEVGFLADV 574
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
RRMNVA+TRA + VV D ST+ + F L H G + A
Sbjct: 575 RRMNVALTRARAKLVVVGDGSTVSRHPFYRSFLEHAERAGAWRSA 619
>gi|297687967|ref|XP_002821469.1| PREDICTED: DNA-binding protein SMUBP-2, partial [Pongo abelii]
Length = 780
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 173/423 (40%), Positives = 235/423 (55%), Gaps = 49/423 (11%)
Query: 279 GERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVA 337
G +VL AP+N AVDN+VE+L+ I+R+G+PAR+ ++ SL ++ +S A VA
Sbjct: 18 GSQVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVA 77
Query: 338 EFERKKSDLRKDLRQCLKDDSLAAG------IRQLLKQLGKTLKKKEKETVKEVLSSAQV 391
D+RKD+ Q + G R +K L K LK++E+ + E L+SA V
Sbjct: 78 -------DIRKDIDQVFVKNKKTQGKREKSNFRNEIKLLRKELKEREEAAMLESLTSANV 130
Query: 392 VLATNTGA-ADPLIRRL--DTFDLV-------------------GKRCILAGDQCQLAPV 429
VLATNTGA AD ++ L FD+V ++CILAGD QL P
Sbjct: 131 VLATNTGASADGPLKLLPESHFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPT 190
Query: 430 ILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTV 489
+S KA G+ +SL+ER A + + LT QYRM+ AI WAS MY G L + +V
Sbjct: 191 TVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHPSV 250
Query: 490 ASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVV 548
A HLL D P V T T PLLL+DT GC L+ S N GE +V
Sbjct: 251 AGHLLRDLPGVAATEETGVPLLLVDT--------AGCGLFELEEEDEQSKGNPGEVRLVS 302
Query: 549 HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVI 607
H+ +L+ AGV +AV SPY QV LR+ L PE +E+ ++D FQGRE +AVI
Sbjct: 303 LHIQALVDAGVPARDMAVVSPYNLQVDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVI 359
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
+S VRSN G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V
Sbjct: 360 LSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEV 419
Query: 668 KHA 670
+ A
Sbjct: 420 RTA 422
>gi|115372685|ref|ZP_01459992.1| superfamily I DNA/RNA helicase [Stigmatella aurantiaca DW4/3-1]
gi|310823878|ref|YP_003956236.1| DNA helicase [Stigmatella aurantiaca DW4/3-1]
gi|115370406|gb|EAU69334.1| superfamily I DNA/RNA helicase [Stigmatella aurantiaca DW4/3-1]
gi|309396950|gb|ADO74409.1| DNA helicase [Stigmatella aurantiaca DW4/3-1]
Length = 640
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 221/681 (32%), Positives = 324/681 (47%), Gaps = 107/681 (15%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
F ++ LL +ER+AE + S+ E L RA Q L ++ +L
Sbjct: 7 FFDQLGRLLSLEREAE----------------RARSAALSESLTLRERAEQGL--SVLDL 48
Query: 76 FVVSTSTGLGGMHLV-LFRVEGNHRLP-PTTLSPGDMVCVRVCDSRGACATSCIQGFVHN 133
V GLGG LV L R + R P PT + GD V V R A Q V
Sbjct: 49 ESVEEEVGLGGRILVTLARAD---RAPFPTRIHNGDSVAVM---PRRAEVKEPAQALVSR 102
Query: 134 LGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ--KNGL 191
+ L P F L +R+D + + +TYER L ++ G+
Sbjct: 103 ----ATRTRLQLAFDRSPPPF--LHEGLLRLDVV---PNDVTYERMRAGLARVKALDKGV 153
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
+R + L G++ E D + + Q A++ L +
Sbjct: 154 ERRRREV-----LLGNE-----------PPRFEKPSDAPPSRPLNPEQADAVSRALAAE- 196
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
++ GPPGTGK+ +L E+ +AV +GER+L TA +NAAVD+++E + GL +RVG+
Sbjct: 197 DFFLVHGPPGTGKSTVLAEVAVQAVARGERLLCTAASNAAVDHLLELCLEQGLRAIRVGH 256
Query: 312 PARISPAVASKSLGEIVKS------------KLASFVAEFERKKSDLRKDLRQCLKDDSL 359
PAR++P +L +V+ + S R+++ R R S
Sbjct: 257 PARVAPRFQEHTLDIVVEEHPDRVLSRELFDEAFSLFGYARRQRTQGRSRERFSNARSST 316
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT---------------------NTG 398
A K L + E++ V+ VL AQV+ T T
Sbjct: 317 AEA-----KGLMDDARALERKAVRAVLERAQVICVTLASLGSGVLAHEEFDRALIDEATQ 371
Query: 399 AADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
A +PL L F L + +LAGD QL P +LS++A + G+GVSL ER H +
Sbjct: 372 ATEPLT--LLGF-LRAPKLVLAGDPQQLPPTVLSQEAAKAGLGVSLFERLLQDHGEGVKR 428
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP-TWITQCPLLLLDTRL 517
L QYRMN I + S+EMYGG+L + +VA L P + P + P+L LDT
Sbjct: 429 MLREQYRMNARIMDFPSREMYGGALRAHPSVAERTL--APVLSPGAELDAPPVLFLDT-- 484
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
G EE + T S +N GEA++++ V +L+ AG+SP +AV +PY AQ HL
Sbjct: 485 ----AGKGFEEQEE-ESTHSLFNPGEADLILARVKALLAAGLSPRELAVIAPYSAQAFHL 539
Query: 578 RERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
RER++ L + VEV T+D+FQGRE DA+++S+ RSN G +GFL D RRMNVA+TRA +
Sbjct: 540 RERVEIL--SPDVEVDTVDAFQGREKDAILVSLTRSNADGNLGFLTDLRRMNVAMTRARR 597
Query: 638 HVAVVCDSSTICHNTFLARLL 658
H+ VV DS+T+ + F AR +
Sbjct: 598 HLFVVGDSATLSGHPFYARFI 618
>gi|220919450|ref|YP_002494754.1| superfamily I DNA and RNA helicase [Anaeromyxobacter dehalogenans
2CP-1]
gi|219957304|gb|ACL67688.1| superfamily I DNA and RNA helicase [Anaeromyxobacter dehalogenans
2CP-1]
Length = 622
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 178/465 (38%), Positives = 244/465 (52%), Gaps = 44/465 (9%)
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
++ + Q+ A+ L ++ L ++ GPPGTGKT +L E+I RA +GE VL AP+N
Sbjct: 175 VLEARLNPEQQAALDLA-DRAEDLALVHGPPGTGKTTVLVEVIRRAAARGESVLAAAPSN 233
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE-FERKKSDLRK 348
AVDN+VE+L+ GL VRVG+PAR+ P + +L V++ A+ +A+ + LR+
Sbjct: 234 LAVDNLVERLAAAGLACVRVGHPARVLPGLLEHTLEARVEAHEAARIAQGLVDQALALRR 293
Query: 349 DLRQCLKDD-----SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPL 403
D R+ + S + + + L ++ E EVL AQVVLAT T P
Sbjct: 294 DARKRRQKRGPGRFSASREQEREARALLAEARRLEARAEAEVLERAQVVLATLTSLDAPA 353
Query: 404 I--RR--LDTFD--------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
+ RR L D L R +LAGD QL P +LS A GG+GVSL
Sbjct: 354 LAGRRFALAVVDEATQAVEPAAYLALLRADRAVLAGDHLQLPPTVLSAAAQAGGLGVSLF 413
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI 505
ER H L Q+RMN I ++ S+ +YGG+L + A + D
Sbjct: 414 ERLVEAHGDRARVMLAEQHRMNARIMAFPSEALYGGALRAHPAAAGRAIDD--------- 464
Query: 506 TQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIA 565
PL L+DT G EE G+ S N GEAE+ V L+ AG++P+ +A
Sbjct: 465 --APLELVDTS------GRGFEEETP-EGSDSKQNTGEAELAAAEVRRLLAAGLAPADVA 515
Query: 566 VQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
V SPY QVQ LR+ L D E AG+EV T+D FQGRE +AV++S+VRSN G VGFL D
Sbjct: 516 VISPYDGQVQRLRQLLADEVE-AGLEVDTVDGFQGREKEAVVVSLVRSNEAGEVGFLADV 574
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
RRMNVA+TRA + VV D ST+ + F L H G + A
Sbjct: 575 RRMNVALTRARAKLVVVGDGSTVSRHPFYRSFLEHAERAGAWRSA 619
>gi|325189317|emb|CCA23837.1| DNA polymerase alphaassociated DNA helicase A putati [Albugo
laibachii Nc14]
Length = 931
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 187/542 (34%), Positives = 275/542 (50%), Gaps = 91/542 (16%)
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
GD ++ L EN L WSE + + SQ ++I L L K + II GPPGTGKT
Sbjct: 160 GDHPLISILFENQLPQWSESRSIDPFNPHLNTSQLESIKLALASK-DIAIIHGPPGTGKT 218
Query: 266 GLLKEIIARAV-QQGERVLVTAPTNAAVDNMVEKLSD------VGLNIVRVGNPARISPA 318
+ E+I +AV ++VLV AP+N AVD ++EKLS + ++R+G+PAR++
Sbjct: 219 TTIVELILQAVIHNKQKVLVCAPSNIAVDTVLEKLSQCPAISQYKVRLLRIGHPARVTAN 278
Query: 319 V--------ASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS-LAAGIRQLLKQ 369
V S + + + + + ER +++R+ R+ + + + +L++
Sbjct: 279 VLQHCFDAQVSNAENTAIVDDIRMEIQQMERTITNIREKARKQKRTQTGQTCDLYKLIRS 338
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
K + K+E+ ++ +L + V+ ATN GA+ L++ + FD+
Sbjct: 339 NRKEIHKRERNVIQNLLQQSHVIFATNMGASTKLLKDI-KFDIAIIDEAAQALEVSCWIP 397
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSL----LERAATL-HEGVLATKLTTQYR 465
KR +LAGD CQL P I SRKA E G+ V+L +ERA EG++ L QYR
Sbjct: 398 IMKAKRVVLAGDHCQLPPTIKSRKAAEDGLQVTLFDRLMERAKMRGFEGIVKM-LDIQYR 456
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDT-PFVK---------PTWITQ-------C 508
M+D I W+S MY +L S VA+ L D FV+ P + Q
Sbjct: 457 MHDDICRWSSDAMYQSALKSFEGVAARTLQDLGTFVRHENEVFVTLPEGVFQVDPSVLGA 516
Query: 509 PLLLLDTRLPYGSLSLGCE--EHLDLAGTGSFY-----------------NEGEAEIVVH 549
L LLDT GC+ E + T F N GEA +V
Sbjct: 517 TLYLLDT--------AGCDLNEEKEQVDTSKFKKDKDARDIASVLSCSKSNPGEALLVDI 568
Query: 550 HVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD-LPEAAGVEVATIDSFQGREADAVII 608
HV SL+ AG+ IAV +PY QVQ L+ RL + P +E+ ++D FQG E +AV++
Sbjct: 569 HVRSLVQAGIPAHDIAVITPYNKQVQVLKSRLSEAFP---SLEIRSVDGFQGCEKEAVVM 625
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVK 668
S+VRSN GFL D RRMNVA+TRA +HVA++CDS TI ++FL L++H FG V+
Sbjct: 626 SLVRSNKKHEAGFLADERRMNVAVTRAKRHVALICDSETISAHSFLRNLVQHFEAFGEVR 685
Query: 669 HA 670
A
Sbjct: 686 FA 687
>gi|406858745|gb|EKD11835.1| DNA-binding protein SMUBP-2 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 690
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 211/662 (31%), Positives = 327/662 (49%), Gaps = 94/662 (14%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFR----------VEGNHRLPPTTLSPGDMVCVRVCDSRGA 121
I NL + S TGLGG +V +G+ LP + GD+V V
Sbjct: 50 ITNLVLSSLRTGLGGKTVVELSPDSATASKKSKDGDGELPEHGIRTGDIVVVS-----EQ 104
Query: 122 CATSCIQGFVHNLGEDGC----------TISVALESRHGD-PTFSKLFGKSVRIDRIQGL 170
A S + V + E G + VAL+ D P +++ I L
Sbjct: 105 PAGSAKKREVREMEEKGARGVITKVTRGAVWVALDGEEDDVPGAKRMW--------IVKL 156
Query: 171 ADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGI 230
A+ +TY+R L+L K + V+ G V+ DL+ +L+ I
Sbjct: 157 ANDVTYKRQTLNLLLKMKPDEYS---GFVQVLFGLGSPSPVS----GDLSGGDRGRLEWI 209
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ +DSQK AI L R + +I GPPGTGKT L E+I + ++Q RVLV P+N
Sbjct: 210 -DPSLNDSQKDAIRFAL-ASREVALIHGPPGTGKTHTLIELILQMLKQNLRVLVCGPSNI 267
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL 350
+VDN+VE+L+ + IVR+G+PAR+ P+V + SL + ++ A+ + + RK+ D ++
Sbjct: 268 SVDNIVERLAPHKIPIVRLGHPARLLPSVLNHSLDVLTQTSEAAAIVKDVRKEMDTKQAS 327
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
+ K I LK+L K +++E++ + ++ ++VVLAT GA + + F
Sbjct: 328 IKKTKSGRERKAIYGDLKELRKEFRERERKCIGSLIKGSKVVLATLHGAGG-FQTKDEVF 386
Query: 411 DLV-------------------GKRCILAGDQCQLAPVILS-------RKALEG------ 438
D+V + +LAGD QL P I + KA+E
Sbjct: 387 DVVIIDEASQALEAQCWVPLLRASKVVLAGDHLQLPPTIKTLNSKTKKSKAVETEGIIKG 446
Query: 439 -GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT 497
+ +L +R LH + LTTQYRM++ I + S E+Y LI++ V + +L +
Sbjct: 447 MTLETTLFDRLLALHGPAIKRMLTTQYRMHEKIMRFPSDELYESKLIAADGVKTRILKEL 506
Query: 498 PF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLD-LAGTG----SFYNEGEAEIVV 548
P+ V T T PL+ DT+ P + EE +D AG G S NE EA +V
Sbjct: 507 PYEVAETEDTTKPLIFYDTQGGDFPEKN----EEEEVDKKAGKGMMGDSKSNEMEAALVR 562
Query: 549 HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD-LPEAAGVEVATIDSFQGREADAVI 607
HV SL+ AGV P IAV +PY AQ+ ++ + + P G+E+ ++D FQGRE +AVI
Sbjct: 563 QHVQSLVDAGVEPEDIAVITPYNAQLALIKSSIKEAFP---GIELGSVDGFQGREKEAVI 619
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
+S+VRSN+ VGFLG+ RR+NVA+TR + + V+ DS T+ N FL R + + +
Sbjct: 620 VSLVRSNSDKEVGFLGEKRRLNVAMTRPKRSLVVIGDSETLQGNKFLKRWMEFLEEHSDL 679
Query: 668 KH 669
++
Sbjct: 680 RY 681
>gi|167536549|ref|XP_001749946.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771661|gb|EDQ85325.1| predicted protein [Monosiga brevicollis MX1]
Length = 1034
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 220/689 (31%), Positives = 331/689 (48%), Gaps = 98/689 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
LD++ QR LL +E+ AE E + P +N I+ L + G +
Sbjct: 27 LDDWLQRQRSLLAMEQKAEAEAVE------PLRRDN------IKRLEAAGL-------VV 67
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCV-RVCDSRGACATSCIQGFV 131
L + TG+ G +V F P PGD+ V R + AT +
Sbjct: 68 RRLAMEDGRTGMNGRFIVRFGRSAAATTPDD--RPGDLTAVARSNEPEKTLATGVVTAV- 124
Query: 132 HNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGL 191
DG TI VA E+ D F+ + + + + L++T+TY R M+L N +
Sbjct: 125 -----DGRTIRVAFEADTDDDGFADVQTANNLL--LYKLSNTVTYRR-----MMLTLNLM 172
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
A T +KE++ L ++ S+ +L + +DSQ+ A+ L +
Sbjct: 173 TDPEWPGALNATRLYNKENLQQLTQSATPRPSDPEL-SFVNPGLNDSQRAAVRFAL-LSQ 230
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+ +I GPPGTGKT + E+I + V+QG +VLV AP+N A+DN+ KL+
Sbjct: 231 GISLIHGPPGTGKTTTVVELIHQCVRQGLKVLVAAPSNMAIDNIALKLAQT--------- 281
Query: 312 PARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL----- 366
V +L +++ S VAE + +R+D+ Q +K L G R
Sbjct: 282 ------KVQEHALDAVLER---SDVAEVTQ---GIREDITQAVK--GLQKGPRSARRGHA 327
Query: 367 --LKQLGKTLKKKEKETVKEVLSSAQVVLATNTG-AADPLIRRL--DTFDLV-------- 413
LK L K L++ + + + +VL +AQVVL T T +A ++ L + FD+V
Sbjct: 328 AELKTLRKELREYQHKGITQVLRAAQVVLGTTTTVSASGSLKHLPKEHFDVVIVDEAGQA 387
Query: 414 -----------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
++ +LAGD QL P + S++A + G+ +LLER ++ G L T
Sbjct: 388 LEVACWSALIHARKMVLAGDHWQLPPTVTSKEAAKQGLAYTLLERVLSVCGGETVCMLDT 447
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ I W+S + Y L + ++V H L P V+ +T+ PL +DT
Sbjct: 448 QYRMHACIQGWSSSQFYESRLRADASVMGHTLAMLPNVQADELTEVPLHFVDTS------ 501
Query: 523 SLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL 581
GC + + S YN EA IVVHHV L+ GV PS I V +PY QV+ +R RL
Sbjct: 502 --GCSLYEAVGEDDLSKYNTAEAAIVVHHVQQLVELGVPPSEIGVITPYNMQVETIRGRL 559
Query: 582 DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAV 641
+ ++ +EV ++D FQGRE +A+ ISMVRSN +GFL D RRMNVA+TRA +H +
Sbjct: 560 REAGLSSEIEVLSVDGFQGREKEAICISMVRSNPDCNIGFLSDFRRMNVAVTRARRHCFL 619
Query: 642 VCDSSTICHNTFLARLLRHIRYFGRVKHA 670
V DS TI T LA L ++ F V A
Sbjct: 620 VGDSRTISAETHLAALTDYLFEFASVSSA 648
>gi|87311458|ref|ZP_01093578.1| DNA-binding protein [Blastopirellula marina DSM 3645]
gi|87285870|gb|EAQ77784.1| DNA-binding protein [Blastopirellula marina DSM 3645]
Length = 687
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 175/461 (37%), Positives = 243/461 (52%), Gaps = 49/461 (10%)
Query: 228 DGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287
+ + + SQ+ A+ L L+ R II GPPGTGKT L EI+ AV +GE+VL AP
Sbjct: 235 ESLASPQLNASQQAAVQLALSA-RDFSIIHGPPGTGKTITLAEIVRAAVARGEKVLACAP 293
Query: 288 TNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKSD 345
+N AVDN+VE+ GL VR+G+PAR+S ++ L +V+ + +AE K+
Sbjct: 294 SNLAVDNLVERFWACGLKAVRLGHPARVSESLHDALLEALVREHPDAKLAEKLVSEAKTL 353
Query: 346 LRKDLRQCLKDDSLAAGIRQLLKQLGKTL----KKKEKETVKEVLSSAQVVLATNTGAAD 401
RK R A G ++ L+ + L + +++T++ +L A VV T TG D
Sbjct: 354 FRKADR--FTRSKPAPGEKRSLRDEARELLDDAARIQQQTLERLLDDAPVVCCTLTGVDD 411
Query: 402 PLI--RRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
L+ RR FDL +R ++AGD CQL P I+SR+A G
Sbjct: 412 DLLGARR---FDLAVIDEACQTTEPACWIPVSRSQRLVIAGDHCQLPPTIVSREAEAAGF 468
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
GVS+LER + A +L QYRM+ I ++S E Y G+L++ +V +H L D
Sbjct: 469 GVSMLERLIARYPQA-AQRLELQYRMHAHIMEFSSLEFYDGALLADPSVEAHSLTDLIAA 527
Query: 501 KPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS 560
W P+ DT G + + + S N EAE+VV V LI +
Sbjct: 528 DELWAK--PVQFFDT--------AGADYQEEQDDSSSRTNPREAELVVRKVNQLIALEMP 577
Query: 561 PSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
P IAV SPY AQV+ LRE L GVE ++D FQGRE + VI S+VRSN G +G
Sbjct: 578 PEQIAVISPYAAQVRLLRESL-----PGGVECDSVDGFQGREQEVVICSLVRSNEKGEIG 632
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
FL D RRMNVA+TRA + + V+ DSSTI N F AR L ++
Sbjct: 633 FLADVRRMNVAMTRAKRKLIVIGDSSTIGGNEFYARFLEYV 673
>gi|118368904|ref|XP_001017658.1| hypothetical protein TTHERM_00339940 [Tetrahymena thermophila]
gi|89299425|gb|EAR97413.1| hypothetical protein TTHERM_00339940 [Tetrahymena thermophila
SB210]
Length = 676
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 217/704 (30%), Positives = 348/704 (49%), Gaps = 69/704 (9%)
Query: 1 MDLERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVS 60
MD + ++T Q +L F Q+ R+ +D +EF Q + + DE+++ K EF++
Sbjct: 1 MD-KNIETNQVQL--FNQQGQVGQRMYKDG-MEFLQRQKKMLE--DEHAEEMKEHEFIIK 54
Query: 61 HGRAP--QELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDS 118
+EL + L + S TGL G LV F ++ + SP V++ +S
Sbjct: 55 QSTCSDLEELGLAVNRLKLKSVKTGLYGRTLVTF-AHPHYSMDKIKESPQLAKMVKLPES 113
Query: 119 RGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLA------- 171
+ + + + +L DG + + + D F F + V +++
Sbjct: 114 KFQSGDN-VSIYKQSLTFDGNPLEKGVIFKKNDYKFVVAFDEEVNENQLSNEVISIVMEV 172
Query: 172 DTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEEN--DLADWSEVKLDG 229
+ +TY R + L +++ N + ++ + D D T N + S+ +D
Sbjct: 173 NEVTYNRFLKCLQNIEEK-YSDVNFKGSQLLRVLLDGSDPTNPNPNIKPVHILSKPIVD- 230
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
K ++ QK AI L+ + + +I GPPGTGKT + E+I +AV+ G RVL A +N
Sbjct: 231 FYKKDLNEEQKDAINFCLSS-QTIGLIHGPPGTGKTMTVCELIYQAVKMGLRVLACAGSN 289
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD 349
AVDNMVE+L+ L ++R+G+PAR+ P + + L K + + E + K ++ K
Sbjct: 290 IAVDNMVERLAKTDLKVMRIGHPARMLPTIYEQCLDN--KLRKTTCFKELKALKQNINKQ 347
Query: 350 LRQCLKDDSLAAG--IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR- 406
L++ KD S I++LL +L K ++++E+ ++KEV+ QVV TN+GAAD + +R
Sbjct: 348 LQKLQKDISYGEKKEIKKLLTELRKEMREQEQLSIKEVIQDTQVVCCTNSGAADYIFKRD 407
Query: 407 --LDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
FDLV GKR +LAGD QL P I S+ G+ V+L
Sbjct: 408 FGKVEFDLVVIDECAQALELSCWIPILLGKRVVLAGDHKQLPPTIKSKNQ---GLSVTLF 464
Query: 446 ERA-ATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
+R ++ L QYRMN I W+S+ +YGG L + +VA+H +
Sbjct: 465 DRVLKEFQPENVSRLLKVQYRMNQQIMEWSSQYVYGGQLKAHESVATH----------SI 514
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
+ LL +DT ++ E D + S N GEA++V L G+ +
Sbjct: 515 GGESILLFIDTAGAKMGETIN-ENANDKNKSKS--NLGEADLVKIIFEELKLQGLQEKEV 571
Query: 565 AVQSPYVAQVQHLRERLDDLP-EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
V +PY AQV +++ ++ VEV+T+D FQGRE + +IISMVRSN L VGFL
Sbjct: 572 GVITPYNAQVDLIKKLFENNNINTQQVEVSTVDGFQGREKECIIISMVRSNPLNQVGFLS 631
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
D RRMNVA+TRA K V ++ DS T+ + FL + ++YF V
Sbjct: 632 DYRRMNVAVTRARKFVCLIGDSETVSSDKFLDEM---VKYFQEV 672
>gi|444911444|ref|ZP_21231619.1| Superfamily I DNA/RNA helicase [Cystobacter fuscus DSM 2262]
gi|444718202|gb|ELW59018.1| Superfamily I DNA/RNA helicase [Cystobacter fuscus DSM 2262]
Length = 640
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 223/678 (32%), Positives = 324/678 (47%), Gaps = 91/678 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
SR F + LL +ERDAE + ++ E + RA Q L
Sbjct: 2 SRDVSFFDSLGRLLSMERDAE----------------RARTAALAEGMSLQQRAEQGL-- 43
Query: 71 TICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGF 130
T +L + GLGG LV + R P L GD V V R A +
Sbjct: 44 TFLDLESLEEEVGLGGRVLVTLARQDRARFP-ARLDNGDQVAVF---PRRAEVKEPARAL 99
Query: 131 VHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ--K 188
V V L P F + +R+DR+ + +TYER L ++
Sbjct: 100 VTR----ATATRVQLAFDRSPPPF--IHEGLLRLDRV---PNDVTYERMRAGLSRVKALD 150
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
GL +R + L G N+ + ++ + + + Q A+A L
Sbjct: 151 KGLGRRKREV-----LLG----------NEPPRFDSLR-EFTPSRPLNPEQHDAVARALA 194
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+ ++ GPPGTGK+ +L E+ A+AV QG+R+L A +NAAVD++++ D GL VR
Sbjct: 195 AE-DFFLVHGPPGTGKSTVLAEVAAQAVAQGQRLLCAAASNAAVDHLLDLCLDKGLRAVR 253
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKSDLRKDLRQCLKDDSL-----AA 361
VG+PAR++P + +L IV+ ++ F+ S L RQ + S A
Sbjct: 254 VGHPARVTPRLQEHTLDLIVEDHPDRVLSRELFDEAFSLLGYARRQRTQGRSRERFSNAR 313
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------- 413
K + + E++ V+ VL AQVV T + D + + FDL
Sbjct: 314 ASTTEAKGMLDEARALERKAVRNVLERAQVVCVT-LASLDSGVLAHEEFDLALLDEAAQS 372
Query: 414 -----------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
+ +LAGD QL P ILS +A + G+ VSL ER H + L
Sbjct: 373 TEPLALLGFLRAPKVVLAGDPQQLPPTILSPEAAKAGLAVSLFERLLADHGDGVKRMLRE 432
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT--PFVKPTWITQCPLLLLDTRLPYG 520
QYRMN AI ++ SKEMYGG L + +VA L D P + + P+L LDT
Sbjct: 433 QYRMNTAIMTFPSKEMYGGELRAHPSVAGRTLADVLPPEAQGDF---PPVLYLDT----- 484
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
G EE + TGS +N GEA+++V V L+ AG++P +AV +PY AQ LRER
Sbjct: 485 -AGKGFEEEQE-KDTGSLFNTGEADLIVARVKELLAAGIAPRELAVITPYRAQAHALRER 542
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
++ P + VEV T+D+FQGRE DA+++S+VRSN+ G +GFL D RRMNVA+TRA +H+
Sbjct: 543 VE--PLSPDVEVDTVDAFQGREKDAILVSLVRSNSEGQIGFLSDLRRMNVALTRARRHLF 600
Query: 641 VVCDSSTICHNTFLARLL 658
VV DS+T+ + F AR +
Sbjct: 601 VVGDSATLSGHAFYARFI 618
>gi|86160632|ref|YP_467417.1| superfamily I DNA/RNA helicase [Anaeromyxobacter dehalogenans
2CP-C]
gi|85777143|gb|ABC83980.1| Superfamily I DNA and RNA helicase [Anaeromyxobacter dehalogenans
2CP-C]
Length = 619
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 180/474 (37%), Positives = 241/474 (50%), Gaps = 72/474 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+ Q+ A+ L ++ L ++ GPPGTGKT +L E+I RA +GE VL AP+N AVDN
Sbjct: 177 LNPEQQAALELA-DRAEDLALVHGPPGTGKTTVLVEVIRRAAARGETVLAAAPSNLAVDN 235
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+VE+L+ GL VRVG+PAR+ P + +L V++ A+ +A Q L
Sbjct: 236 LVERLAAAGLACVRVGHPARVLPGLLEHTLEARVEAHEAARIA--------------QDL 281
Query: 355 KDDSLA-----------------AGIRQLLKQLGKTL---KKKEKETVKEVLSSAQVVLA 394
D +LA + R+ ++ L ++ E EVL AQVVLA
Sbjct: 282 VDQALALRRDARKRRKKRGPGRFSASREQEREARALLAEARRLEARAEAEVLERAQVVLA 341
Query: 395 TNTGAADPLI--RR--LDTFD--------------LVGKRCILAGDQCQLAPVILSRKAL 436
T T P + RR L D L R +LAGD QL P +LS A
Sbjct: 342 TLTSLDAPALAGRRFALAVVDEATQAVEPAAYLALLRADRAVLAGDHLQLPPTVLSAAAQ 401
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
GG+GVSL ER H L Q+RMN I ++ S+ +YGG+L + A + D
Sbjct: 402 AGGLGVSLFERLVEAHGDRARVMLAEQHRMNARIMAFPSEALYGGALRAHPAAAGRAIDD 461
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
PL L+DT G EE G+ S N GEAE+ V L+
Sbjct: 462 -----------APLELVDTS------GRGFEEETP-EGSDSKQNAGEAELAASEVRRLLA 503
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
AG++P+ +AV SPY AQVQ LR+ L D E AG+EV T+D FQGRE +AV++S+VRSN
Sbjct: 504 AGLAPADVAVISPYDAQVQRLRQLLADELE-AGLEVDTVDGFQGREKEAVVVSLVRSNEA 562
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
G VGFL D RRMNVA+TRA + VV D ST+ + F L H G + A
Sbjct: 563 GEVGFLADVRRMNVALTRARAKLVVVGDGSTVSRHPFYRSFLEHAERAGAWRSA 616
>gi|19075869|ref|NP_588369.1| DNA polymerase alpha-associated DNA helicase A (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74676175|sp|O94247.1|HCS1_SCHPO RecName: Full=DNA polymerase alpha-associated DNA helicase A
gi|4239673|emb|CAA20863.1| DNA polymerase alpha-associated DNA helicase A (predicted)
[Schizosaccharomyces pombe]
Length = 660
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 202/659 (30%), Positives = 318/659 (48%), Gaps = 86/659 (13%)
Query: 29 DAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVSTSTGLGGMH 88
D E+EF E + E S P+ L G A + NL + TG GG
Sbjct: 20 DREIEFVDEAQKSEVDETEKSIKRFPLSVLQRKGLA-------LINLRIGVVKTGFGGKT 72
Query: 89 LVLFRVE----GNHRLPPTTLSPGDMVCVR-----VCDSRGACATSCIQGFVHNLGEDGC 139
++ F + LP + SPGD+V +R R ++G V + E
Sbjct: 73 IIDFEKDPAFSNGEELPANSFSPGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERH- 131
Query: 140 TISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIA 199
ISVAL+S P+ SV + L + +TYER ++ +++ RN +
Sbjct: 132 -ISVALKSEEDIPS-------SVTRLSVVKLVNRVTYERMRHTMLEFKRSIPEYRN---S 180
Query: 200 AVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGP 259
TL G K+ +++ + D K + SQKKA+ + K L +I GP
Sbjct: 181 LFYTLIGRKKADVSIDQKLIGDIK------YFNKELNASQKKAVKFSIAVKE-LSLIHGP 233
Query: 260 PGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAV 319
PGTGKT L EII + V + +R+LV +N AVDN+V++LS G+ +VR+G+PAR+ P++
Sbjct: 234 PGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSI 293
Query: 320 ASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAGIRQLLKQLGKT 373
SL + ++ V + +D+ CL K+ I + +++L K
Sbjct: 294 LDHSLDVLSRTGDNGDVIR------GISEDIDVCLSKITKTKNGRERREIYKNIRELRKD 347
Query: 374 LKKKEKETVKEVLSSAQVVLATNTGAADPLIR--RLDT---------------FDLVG-K 415
+K E +TV ++S+++VV T GA ++ R D L+G
Sbjct: 348 YRKYEAKTVANIVSASKVVFCTLHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPLLGMN 407
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
+ ILAGD QL+P + S++ +S+ ER ++ L QYRM++ I+ + S
Sbjct: 408 KVILAGDHMQLSPNVQSKRPY-----ISMFERLVKSQGDLVKCFLNIQYRMHELISKFPS 462
Query: 476 KEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA-G 534
Y L+ + V LL+D V+ T +T P+ DT LG + D +
Sbjct: 463 DTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDT--------LGNYQEDDRSED 514
Query: 535 TGSFY-----NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+FY N EA+IV +H+ L+ AG+ IAV +PY AQV +R+ L + +
Sbjct: 515 MQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKE--KGIE 572
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
VE+ ++D QGRE +A+I S+VRSN + VGFL + RR+NVAITR +H+ V+ DS+T+
Sbjct: 573 VEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTV 631
>gi|283779091|ref|YP_003369846.1| AAA ATPase [Pirellula staleyi DSM 6068]
gi|283437544|gb|ADB15986.1| AAA ATPase [Pirellula staleyi DSM 6068]
Length = 639
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 183/477 (38%), Positives = 256/477 (53%), Gaps = 57/477 (11%)
Query: 222 WSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER 281
+ EVK + + D SQ++ + L L+ + I GPPGTGKT L +I + V +G +
Sbjct: 178 FREVK-NFVADAALDPSQQEGVKLALSAE-DFACIHGPPGTGKTTTLVAVIRQLVARGAK 235
Query: 282 VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER 341
VL TAP+N AVD+++EKL G+ ++R+G+PAR+ ++ L E V++ VA
Sbjct: 236 VLATAPSNLAVDHLLEKLHLAGVRVLRLGHPARVQESLHHLVLDEQVENHPDVAVA---- 291
Query: 342 KKSDLRKDLRQCLKDDSLAA---------GIRQLLKQLGKTL----KKKEKETVKEVLSS 388
RK +R L+ AA G +Q L+ + L ++ E V+ +L S
Sbjct: 292 -----RKLVRDALRLKDRAAKFTRAKPPPGYKQELRAEARELFSDARRIEAGVVRYLLDS 346
Query: 389 AQVVLATNTGAADPLI--RRLDT--FD--------------LVGKRCILAGDQCQLAPVI 430
A VVLAT TG ++ RR D D L R ILAGD QL P I
Sbjct: 347 ADVVLATLTGIDATVLEDRRFDVAVIDEAAQATEPACWPALLRADRVILAGDPFQLPPTI 406
Query: 431 LSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVA 490
+S +A GG+ SL+ER ++ +L QYRM+ +I +++S E Y L + +VA
Sbjct: 407 ISPEAARGGLARSLMERLLETSTTTISHRLAVQYRMHQSIMAFSSAEFYEQGLTADPSVA 466
Query: 491 SHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG--SFYNEGEAEIVV 548
SHLL D V PT T L +DT G +E AG+ S N EAE+VV
Sbjct: 467 SHLLSDLSEVTPTDRTSTALEFIDT------AGAGYDER---AGSSQESRENPQEAELVV 517
Query: 549 HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVII 608
+L AGV+ AIA+ SPY AQV+ LR LD ++V TID FQGRE++AVII
Sbjct: 518 KLALALRDAGVAAEAIAIISPYAAQVRLLRRLLD----GTLIDVDTIDGFQGRESEAVII 573
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
S+VRSN G +GFL D RRMNVAITRA + + ++ DS+TI + F AR+L + G
Sbjct: 574 SLVRSNATGEIGFLADVRRMNVAITRARRKLIIIGDSATIGGHDFYARMLSWVEREG 630
>gi|145505511|ref|XP_001438722.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405894|emb|CAK71325.1| unnamed protein product [Paramecium tetraurelia]
Length = 743
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 173/533 (32%), Positives = 277/533 (51%), Gaps = 76/533 (14%)
Query: 172 DTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIM 231
+ +TY+R+ + + +++ ++++P I LFGD+++ + N ++ G
Sbjct: 163 NQVTYKRHLQVIDDIKQQ--YEKHPIIQ---ILFGDQDEKMKEKIN-----QNMEFQGDT 212
Query: 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV-QQGERVLVTAPTNA 290
K +D QK A+ +N+ + +I GPPGTGKT + E I +AV Q ++L A +N
Sbjct: 213 IKQLNDQQKIAVQKAMNQPH-ISLIHGPPGTGKTRTVCEYIKQAVLVQRHKILACANSNI 271
Query: 291 AVDNMVEKLSDVG-LNIVRVGNPARISPAVASKSLGEIVKSKLA-SFVAEFERKKSDLRK 348
AVDNM+E++ ++ L + R+GNPAR++ V + ++VK + + + + + + K
Sbjct: 272 AVDNMIERIQNISQLKVCRIGNPARMTDQVRYVCIDQLVKKTTSYAIMKTIKTEIQQIEK 331
Query: 349 DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD 408
L + + + AA +R LKQ K ++++ +E + QV+ +TN G+ ++L
Sbjct: 332 KLNRAERRE--AAELRDKLKQKKKEYFEQQQLAYEEAIQDCQVIFSTNVGSGQFQFQQLT 389
Query: 409 T---FDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLE 446
FD+V G + +LAGD CQL P + ++ G+ ++L E
Sbjct: 390 KNIKFDVVVIDECAQSLEISCWIPILKGNKVVLAGDHCQLPPTVKTKNT---GLEMTLFE 446
Query: 447 RAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH-------LLVDTP 498
R LH +L LT QYRMN +I W+S+E Y G L++ TVA+ L VDT
Sbjct: 447 RVENELHVNIL---LTVQYRMNKSIMQWSSQEFYDGHLVADQTVANRTVSDTILLFVDTS 503
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG 558
Q LL D + S YN GEA +V LI G
Sbjct: 504 CCDFYEQQQESLLYFDDQ------------------NKSKYNVGEAGLVQIISEELINLG 545
Query: 559 VSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA 618
V I + +PY AQVQ L+ +++D +E++T+D FQGRE D +IISMVRSN +G
Sbjct: 546 VQKQDIGIITPYNAQVQLLKSKIND------IEISTVDGFQGREKDCIIISMVRSNQMGE 599
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
VGFL +SRRMNVA+TRA K V ++ DS T+ ++ FL RL+ + G + A+
Sbjct: 600 VGFLCESRRMNVAVTRAKKFVCLIGDSETVSNDAFLKRLIDYFVENGEQRSAQ 652
>gi|220931020|ref|YP_002507928.1| putative DNA helicase [Halothermothrix orenii H 168]
gi|219992330|gb|ACL68933.1| putative DNA helicase [Halothermothrix orenii H 168]
Length = 754
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 209/728 (28%), Positives = 344/728 (47%), Gaps = 125/728 (17%)
Query: 4 ERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGR 63
E+ ++ + + EL+ +ER E+E + E+ + + + GR
Sbjct: 81 EKNHRYTKKVSNYVNKFKELVELERKEEMERHEIEIKRLSGEERQKN-----------GR 129
Query: 64 APQELCDTICNLFVVSTSTGLGGMHLVLF-RVEGNHRLPPTTLSPGDMVCV---RVCDSR 119
A I +L TGLG ++V F R +LP T + GD+V + DS
Sbjct: 130 A-------ILHLRGRDEGTGLGNKYIVKFVRQWQGEKLPETEIKVGDLVMISKHNPLDSS 182
Query: 120 GACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERN 179
AT + + +I+V + + P+F ++ K +R+D + +T++R
Sbjct: 183 NPTATV--------VEKTNYSITVVFDKK--PPSF--IYKKGLRMDL---YVNDITFQRM 227
Query: 180 CEALMLLQK-NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDS 238
AL +++ G R +I L G K+ + E ++ +W + + S
Sbjct: 228 LSALDQIRRAKGNLGRIRNI-----LLGIKKPGWYRREPEIIEW--------VNDDLNLS 274
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
QK A+ + + R + +IQGPPGTGKT E++ +AV+ G+RVL TA +N AVDN+VE+
Sbjct: 275 QKNAVKKAI-QARDIYLIQGPPGTGKTVTAVEVVNQAVKSGKRVLATAESNVAVDNLVER 333
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLR---------- 347
L GLN++RVG+P R++P + +L ++ L K SDL+
Sbjct: 334 LVGYGLNVIRVGHPFRVTPLLREHTLDYRVLDHPLYKKALNLREKASDLKEKQEGLTSPS 393
Query: 348 ---------KDLR--------------QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE 384
K +R + +K+ + GI++ + QL + E+ V++
Sbjct: 394 GQWRRGMSDKQIRINARKNRSFRGVPAKRIKEMAKWLGIQEEINQLFDKINSLEERAVRD 453
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
+L+SA VV +TN+ A L+ + F+LV ++ +L GD Q
Sbjct: 454 LLNSADVVCSTNSTAGSELLEGWE-FELVVIDEATQATEPGALIPLIKAQKAVLIGDHKQ 512
Query: 426 LAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLIS 485
L P +LS+KA + G+ SL ER +L+ + L QYRMND I +++ YGG L S
Sbjct: 513 LPPTVLSQKADKQGLSKSLFERLYSLYGDKYCSLLEIQYRMNDLIMEFSNSHFYGGRLKS 572
Query: 486 SSTVASHLLVDTP--------FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS 537
+ V +H L D F + + P++ LDT ++ E L + S
Sbjct: 573 APEVRNHTLRDLGIEISEGKCFTEKGFDPDNPVVFLDTS------NMEARER-SLPNSDS 625
Query: 538 FYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDS 597
+ N EAEIV+ V + G+ IAV +PY QV + L+ L +E+ T+D
Sbjct: 626 YDNPVEAEIVLDLVGEALKLGLEQRHIAVITPYKDQV----DLLNHLSRFENLEINTVDG 681
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
FQGRE + V+IS+VRSN +GFL D RR+NVAITR + + ++ DS+TI + + L
Sbjct: 682 FQGREKEVVMISLVRSNKHRNIGFLRDLRRLNVAITRPKRKLIIIGDSNTISGHEVYSSL 741
Query: 658 LRHIRYFG 665
+ ++R G
Sbjct: 742 VDYVRENG 749
>gi|326426430|gb|EGD72000.1| hypothetical protein PTSG_00016 [Salpingoeca sp. ATCC 50818]
Length = 1132
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 168/458 (36%), Positives = 257/458 (56%), Gaps = 36/458 (7%)
Query: 231 MGKTFDDSQKKAIALGLNKKRP-LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
+ K+ + SQ A+A L +RP + +I GPPGTGKT + E+I + V++G++VLV A +N
Sbjct: 188 LNKSLNASQLGAVAFAL--QRPDIAVIHGPPGTGKTTTVVELILQLVKRGQKVLVAAASN 245
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKS-KLASFVAEFERKKSDLRK 348
AVDN+VE+L N+VR+G+P+R+ +V SL ++ S + V + +D+R
Sbjct: 246 MAVDNLVERLIAFNANVVRIGHPSRLLHSVKDHSLDSLLSSSEDMDIVRGIYEEIADIRN 305
Query: 349 DLRQCLKDDSLAAGIR--QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR 406
+ + AA + + +K L + + +E ++++L+SA VV T T + +
Sbjct: 306 KRPSKRQPGARAAQFQAQRDIKDLRRDAQSRESRLLRQMLTSADVVCGTTTTVCPTGVLK 365
Query: 407 ---LDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
+ FD+ RC+LAGD QL P ++S A+ G+ ++L
Sbjct: 366 NIPKEHFDVAVVDEAGQALEPAAWAAVMQAPRCVLAGDHFQLPPTVMSAAAVASGLPITL 425
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
LERA + + L TQYRM+ AI SW+S +Y L + VA+HLL V T
Sbjct: 426 LERAVNMFGDSVTRMLDTQYRMHAAIQSWSSAHLYNSQLHPADQVAAHLLTQLDGVTDTE 485
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
T+ PL+ +DT GS + D+ S NEGEA IVV HV SL+ AGV P I
Sbjct: 486 TTRVPLVYVDT---AGSGAHESSGEDDI----SKCNEGEAMIVVEHVSSLLSAGVQPKDI 538
Query: 565 AVQSPYVAQVQHLRERLDDLP-EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
V +PY QV+ +R L +A+GVEV+++D FQGRE +A++IS+VRSN VGFL
Sbjct: 539 GVITPYNLQVEKVRGLLSAHSGDASGVEVSSVDGFQGREKEAIVISLVRSNDERIVGFLR 598
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
D RR+NVA+TRA +H+ +V DS+TI + + L+ ++
Sbjct: 599 DFRRINVAVTRARRHLCIVGDSNTITADEHMDSLVNYL 636
>gi|403341854|gb|EJY70244.1| DNA-binding protein SMUBP-2 [Oxytricha trifallax]
Length = 1044
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 187/606 (30%), Positives = 300/606 (49%), Gaps = 75/606 (12%)
Query: 103 TTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSV 162
+ SPGD+V V + A+ ++G V+ + +D I V+ + H + +
Sbjct: 76 SKFSPGDIVGV--FQASQTDASDRVEGIVYRVTQD--QIVVSFKEMHDFEGMRQPLALVI 131
Query: 163 RIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADW 222
LA+ +T++R EAL +L KN ++N + V LF +E + L D
Sbjct: 132 -------LANEVTHKRCKEALEIL-KNYTQRQNQRMIEV--LFEIQEPQVQHDTEYLKDM 181
Query: 223 SEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGER 281
+ ++SQ+ AI L + +I GPPGTGKT + E+I ++V+ Q +
Sbjct: 182 K------YFNQGLNESQQTAIEKCLTST-DVSMIHGPPGTGKTTTVVELILQSVEKQKAK 234
Query: 282 VLVTAPTNAAVDNMVEKL--SDVGLNIVRVGNPARISPAVASKSLGEIV--KSKLASFVA 337
++ AP+N AVDN++E+L S+ LNIVR+G+PAR+ +V L ++ ++
Sbjct: 235 IMACAPSNIAVDNIIERLYASNPKLNIVRIGHPARLMESVQQFCLDALISKRTDYGKQTN 294
Query: 338 EFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
E R + L + L Q K + I K L K LK+ E+ + ++ A V+ T T
Sbjct: 295 EIRRMINKLNQKL-QRTKSKTERKDIYGEYKMLKKDLKQIEQNHINDIFMRADVICCTLT 353
Query: 398 GAADPLIRRL-------DTFDLV-------------------GKRCILAGDQCQLAPVIL 431
A D + R FD++ K+ ++AGD QL +
Sbjct: 354 SAGDKTLTRFINNNMQDSLFDMLVIDECAQSIEPACWIPIKFAKKLVMAGDHKQLDATVK 413
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
S +A G+ +SL ER + +T L QYRMN+ I W+++ MY G+L + V +
Sbjct: 414 SDEASRKGLSLSLFERVMKFKNKI-STMLDEQYRMNEKIMKWSNQAMYDGNLKAHEDVKN 472
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL-GCEEHLDLAGTGSFYNEGEAEIVVHH 550
L+VD + PLLL+DT G+L G +E + S YN GE ++V+
Sbjct: 473 RLMVDLYAQSQEELMLSPLLLIDT---AGALMYEGIDEQ---SENESKYNNGECDLVIQL 526
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRE------------RLDDLPEAAG--VEVATID 596
+ L+ G+ S I V +PY AQV +++ + +P+ G +EV+T+D
Sbjct: 527 LKELVTMGIRKSDIGVITPYNAQVNQIKKAIRGAEELHTHVEIGQIPQRGGERIEVSTVD 586
Query: 597 SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLAR 656
FQGRE + +IISMVRSN G +GFL + RRMNVA+TRA + A++ DS T+ N FL
Sbjct: 587 GFQGREKEVIIISMVRSNPKGEIGFLSNERRMNVAVTRAKRLCAIIADSGTVSRNNFLKD 646
Query: 657 LLRHIR 662
L+++ +
Sbjct: 647 LIQYFK 652
>gi|405355805|ref|ZP_11024917.1| hypothetical protein A176_1051 [Chondromyces apiculatus DSM 436]
gi|397091077|gb|EJJ21904.1| hypothetical protein A176_1051 [Myxococcus sp. (contaminant ex DSM
436)]
Length = 639
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 175/475 (36%), Positives = 250/475 (52%), Gaps = 60/475 (12%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+ + Q+ A A L + ++ GPPGTGK+ +L EI A+AV G+R+L TA +NAAV
Sbjct: 179 RPLNPEQQDATARALASE-DFFLVHGPPGTGKSTVLAEIAAQAVADGQRLLCTAASNAAV 237
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV--------------AE 338
D++++ D GL VRVG+PAR++ + +L +V+S V A
Sbjct: 238 DHLLDLCLDKGLRAVRVGHPARVAARLQEHTLDIVVESHPDRVVSRELFDEAYSLLGYAR 297
Query: 339 FERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT--- 395
+R + R+ S A G+ + L E++ VK VL++A V+ T
Sbjct: 298 RQRNQGRSRERFANARASTSEAKGMLDEARAL-------ERKAVKAVLANADVICVTLSS 350
Query: 396 ------------------NTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALE 437
T A +PL L F L R ILAGD QL P +LS++A +
Sbjct: 351 LDSGVLSGEKFDLALLDEATQATEPLA--LLGF-LRAPRVILAGDPQQLPPTVLSQEAAK 407
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD- 496
G+GVSL ER H + L QYRMN I ++ S+EMY G L + +VA L +
Sbjct: 408 AGLGVSLFERLLKDHGEGVKRMLREQYRMNARIMAFPSREMYAGELRAHPSVADRALAEV 467
Query: 497 -TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI 555
TP + P+L LDT G EE ++ T S +N GEA +V V +L+
Sbjct: 468 LTPGAD---VDAPPVLFLDT------AGKGFEEEVE-PTTRSLFNPGEAGLVEARVRALL 517
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
AG+SP +AV +PY AQ LRER++ L + VEV T+D+FQGRE DA+I+S+ RSN
Sbjct: 518 AAGLSPRELAVITPYSAQAHRLRERIEAL--SPDVEVDTVDAFQGREKDAIIVSLTRSNG 575
Query: 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
G +GFL D RRMNVA+TRA +H+ VV DS+T+ + F AR + + G + A
Sbjct: 576 EGQLGFLNDLRRMNVALTRARRHLFVVGDSATLSGHAFYARFVEGTQEHGGYRSA 630
>gi|346979330|gb|EGY22782.1| DNA-binding protein SMUBP-2 [Verticillium dahliae VdLs.17]
Length = 649
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 188/559 (33%), Positives = 290/559 (51%), Gaps = 97/559 (17%)
Query: 168 QGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKL 227
+GLAD +TY+R + + LQK + + + + LFG L+ S + +
Sbjct: 106 EGLADEVTYKRMNQTMEKLQKMPEAEYS---SFMRVLFG------------LSSPSPIPV 150
Query: 228 ----DGIMGK------TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ 277
DG +GK + +DSQK AI L R + +I GPPGTGKT L E+I + V+
Sbjct: 151 DLAADGELGKLEWIDPSLNDSQKDAIRFAL-ASREVALIHGPPGTGKTHTLIELILQLVR 209
Query: 278 QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV- 336
+ +R+LV P+N +VDN+VE+L+ + I+R+G+PAR+ P+V + SL + + A +
Sbjct: 210 RDQRILVCGPSNISVDNIVERLAPHKIPIIRLGHPARLLPSVLAHSLDVLTHTSSAGAIV 269
Query: 337 ----AEFERKKSDLRK-----DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLS 387
AE + K++ L+K D R D LK L K +++E+ ++E++
Sbjct: 270 QDVRAEMDAKQASLKKARTGRDRRAIYAD----------LKDLRKEYRERERGCLRELVG 319
Query: 388 SAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAP 428
++VVLAT GA +R + FD+V + + AGD QL P
Sbjct: 320 GSKVVLATLHGAGGFQLRD-EKFDVVIIDEASQALEAQCWVPLLRANKVVCAGDHLQLPP 378
Query: 429 VI--------LSRKALEGGIGV--------SLLERAATLHEGVLATKLTTQYRMNDAIAS 472
I + +K E + + +L +R +LH + L TQYRM++AI
Sbjct: 379 TIKSLNSKTNMPKKKDEEEVPIVKGMTLETTLFDRLLSLHGPSIKRMLITQYRMHEAIMR 438
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
+ S E+Y G L+++ +VA+ LL D P+ V+ T T PL+ +DT+ G EE D
Sbjct: 439 FPSDELYEGRLVAAESVATRLLKDMPYAVQDTEDTNEPLVFIDTQ--GGDFPEKSEEDSD 496
Query: 532 LAGTG--------SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD 583
A S NE EA +V H L+ AG+ P IAV +PY AQ+ L ++
Sbjct: 497 DAAKKAKLSLNGESKSNEMEAAVVRQHARQLVEAGIKPEDIAVVTPYNAQLALLAPLKEE 556
Query: 584 LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVC 643
LP G+E+ ++D FQGRE +AVI+S+VRSN G VGFL + RR+NVA+TR + + VV
Sbjct: 557 LP---GIELGSVDGFQGREKEAVIVSLVRSNGDGEVGFLAEKRRLNVAMTRPKRSLTVVG 613
Query: 644 DSSTICHNT-FLARLLRHI 661
DS T+ + FL R + +
Sbjct: 614 DSETVKRGSAFLRRWIEFL 632
>gi|338532930|ref|YP_004666264.1| putative DNA helicase [Myxococcus fulvus HW-1]
gi|337259026|gb|AEI65186.1| putative DNA helicase [Myxococcus fulvus HW-1]
Length = 639
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 177/467 (37%), Positives = 251/467 (53%), Gaps = 44/467 (9%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+ + Q+ A A L + ++ GPPGTGK+ +L EI A+AV G+R+L TA +NAAV
Sbjct: 179 RPLNPEQQDATARALAAE-DFFLVHGPPGTGKSTVLAEIAAQAVADGKRLLCTAASNAAV 237
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKSDLRKDL 350
D++++ D GL +RVG+PAR++ + +L +V+S V+ F+ S L
Sbjct: 238 DHLLDLCLDKGLRAIRVGHPARVAARLQEHTLDIVVESHPDRGVSRDLFDEAYSLLGYAR 297
Query: 351 RQCLKDDSLA--AGIRQLLKQLGKTLKKK---EKETVKEVLSSAQVVLAT---------- 395
RQ + S A R + L + E++ V+ VL++A V+ T
Sbjct: 298 RQRTQGRSRERFANARASTSEAKGMLDEARALERKAVRSVLANADVICVTLSSLDSGVLA 357
Query: 396 -----------NTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
T A +PL L F L R ILAGD QL P +LS++A + G+GVSL
Sbjct: 358 GEQFDLALLDEATQATEPLA--LLGF-LRAPRVILAGDPQQLPPTVLSQEAAKAGLGVSL 414
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
ER H + L QYRMN I + S+EMYGG L + +VA L D
Sbjct: 415 FERLLKDHGEGVKRMLREQYRMNARIMDFPSREMYGGELRAHPSVADRTL-DAVLTPGAD 473
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
+ P+L LDT G EE ++ T S +N GEA +V V +L+ AG+SP +
Sbjct: 474 VDAPPVLYLDT------AGKGFEEEVE-PTTKSLFNPGEAGLVEARVRALLAAGLSPREL 526
Query: 565 AVQSPYVAQVQHLRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
AV +PY AQ LRER++ L PE VEV T+D+FQGRE DAVI+S+ RSN+ G +GFL
Sbjct: 527 AVITPYSAQAHQLRERIEALSPE---VEVDTVDAFQGREKDAVIVSLTRSNSEGQLGFLT 583
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
D RRMNVA+TRA +H+ VV DS+T+ + F R + + G + A
Sbjct: 584 DLRRMNVALTRARRHLFVVGDSATLSGHPFYTRFVEGTQAHGGYRSA 630
>gi|145348783|ref|XP_001418823.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579053|gb|ABO97116.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 609
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 201/608 (33%), Positives = 307/608 (50%), Gaps = 78/608 (12%)
Query: 100 LPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFG 159
LPP LSP D+VC+R S A G V+ + + ++ D +L G
Sbjct: 40 LPPHKLSPHDVVCLRPNKS-SAEGEPLASGVVYRIRDTQIELAC-------DDMPDELSG 91
Query: 160 KSVRIDRIQGLADTLTYERNCEALMLLQKNG--LHKRNPSIAAVVTLFGDKEDVTWLEEN 217
++R++R L++ T++R A+ + K G + P V FGD +
Sbjct: 92 -TLRLER---LSNEATHKRLVSAVERVGKYGGSSDAKQPGAHLVGVAFGDSKPRVSKTGK 147
Query: 218 DLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ 277
++ +W LD SQ+ AI L + +I GPPGTGKT + E +A+ V
Sbjct: 148 EV-EWINTALDA--------SQRGAIEHAL-RCVDFALIHGPPGTGKTTAVVEYVAQEVA 197
Query: 278 QGERVLVTAPTNAAVDNMVEKLSDVGL------NIVRVGNPARISPAVASKSL-GEIVKS 330
+G RVL +N A+DN+VE+L + L +VRVG+PAR+ P+V + SL +++ S
Sbjct: 198 RGSRVLACTASNIAIDNLVERLMKIKLPEGGEMRLVRVGHPARLLPSVLAASLEAQLLAS 257
Query: 331 KLASFVAEFERKKSDLRKDLRQC--LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSS 388
+ + ++ LR+ L + KD +R+ L+ L K + ++K +++V+
Sbjct: 258 DNSKLAKDCAKESKILRRKLLKLNDRKDRVERNEVRKELRVLAKEERNRQKAAMRDVVDG 317
Query: 389 AQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPV 429
A+VV +T +GA ++ D FD+V GK+ +LAGD QL P
Sbjct: 318 ARVVCSTLSGALSGTLKFQD-FDVVVIDEAAQALEAACWGAVLKGKKTVLAGDHLQLPPT 376
Query: 430 ILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTV 489
++S +A G+ +L +R ++ ++A LT QYRM+ I +W+S+ MY G L ++ +V
Sbjct: 377 VISDEAQAKGLSDTLFQRLHDMYGDLVARMLTVQYRMHADIMTWSSEAMYQGKLTAAESV 436
Query: 490 ASHLL----VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE--EHLDLAGTGSFYNEGE 543
A+H L D P V LLL+DT GC+ E ++ G S N E
Sbjct: 437 ATHRLRGDGEDDPPV---------LLLIDT--------AGCDMDERVEEDGE-SKENPDE 478
Query: 544 AEIVVHHVFSLICA-GVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGRE 602
A +V+ V L+ V+ I V +PY QV LRE +EV+T+D FQGRE
Sbjct: 479 AAVVMEVVRRLVARHDVAVDDIGVITPYNGQVTVLRELRARDDALKNLEVSTVDGFQGRE 538
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+A+IIS VRSN G VGFL DSRRMNVA+TRA KH ++ DS T+ + FLA L+ +
Sbjct: 539 KEAIIISAVRSNASGEVGFLSDSRRMNVAVTRARKHCCLIIDSDTVSSDRFLATLVEYFE 598
Query: 663 YFGRVKHA 670
G V A
Sbjct: 599 THGDVASA 606
>gi|367007328|ref|XP_003688394.1| hypothetical protein TPHA_0N01790 [Tetrapisispora phaffii CBS 4417]
gi|357526702|emb|CCE65960.1| hypothetical protein TPHA_0N01790 [Tetrapisispora phaffii CBS 4417]
Length = 677
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 215/700 (30%), Positives = 338/700 (48%), Gaps = 122/700 (17%)
Query: 15 EFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICN 74
EF++R+ + ++ E++ +++ L ++P ++ LVS+G A I N
Sbjct: 4 EFSERLLKNIQHEKEQDVKAIATNLKSLP-----------LQKLVSNGLA-------INN 45
Query: 75 LFVVSTSTGLGGMHLVLFRVEG--NHRLPPTTLSPGDMVCVRVCDSRGACATSC------ 126
L + + +GL G V V N + + GD+V +R S A S
Sbjct: 46 LALENIRSGLAGKIFVELTVNHAINTEIARGDIKAGDIVSIRPSTSGKEKAKSRGKNSFI 105
Query: 127 ------------IQGFVHNLGEDGCTISVALESRHGDP----TFSKLFGKSVRIDRIQGL 170
I G V+ + + C+I++ E D +F KL+ I
Sbjct: 106 DLDNSADGIALEIVGTVYKITDQLCSITIE-EKDEEDAMKLYSFPKLY--------IIKT 156
Query: 171 ADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGI 230
+T+TY+R L +K G + P+ + L D++ + ++D+
Sbjct: 157 VNTVTYKRMESTL---RKLGEFEGTPNNNIIQYLLQDRQFIKQTPKSDIE---------F 204
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
K + SQK AIA + + II GPPGTGKT L E+I + V +GERVLV P+N
Sbjct: 205 NNKALNKSQKDAIAFAM--ANDISIIHGPPGTGKTYTLIELIQQLVAKGERVLVCGPSNI 262
Query: 291 AVDNMVEKLSDV--GLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
AVD ++E+L V G ++R+G+PAR+ A + SL GEIVK +
Sbjct: 263 AVDTILERLDKVLPGNVLLRIGHPARLLEANLAHSLDILSRSGNAGEIVKD----IDKDI 318
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
++ SD++K + KD A R+L+K L + L+ +EK+ + +++ A+VV+AT GA
Sbjct: 319 DKTISDIKK--MKNYKDRKEA---RKLVKDLRRELRTREKKVICDMILEARVVVATLHGA 373
Query: 400 A--------DPLIRRLDTF--DLVGK-------------------RCILAGDQCQLAPVI 430
D + + +T D V + R +LAGD QL P I
Sbjct: 374 GSRELCSVYDQVPKLFNTLIIDEVSQSLEQQCWIPLISHYRSDISRLVLAGDNKQLPPTI 433
Query: 431 LSR--KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSST 488
+ K + + +L +R ++ T L QYRMN++I + S EMY G LI+ S+
Sbjct: 434 KTEDNKKIADQLSTTLFDRLVKVYGDQFKTLLNVQYRMNESIMEFPSTEMYNGQLIADSS 493
Query: 489 VASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVV 548
V + +L D P V T PL+ DT+ G L + D S YNE EA +V
Sbjct: 494 VKTQILSDLPGVDANDETLEPLIWYDTQ---GDDFLERADD-DNEIIASKYNENEAYLVK 549
Query: 549 HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVII 608
H+ L+ + V SAI V SPY AQ+ +++ + E G+E++T+D FQGRE + +I+
Sbjct: 550 SHILKLLESNVPQSAIGVISPYRAQISFIKKLIR--AEYPGIEISTVDGFQGREKEVIIL 607
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
S+VRSN VGFL DSRR+NVAITR+ K + V+ + T+
Sbjct: 608 SLVRSNDDYKVGFLKDSRRLNVAITRSKKQLCVIGNMETL 647
>gi|398411081|ref|XP_003856885.1| hypothetical protein MYCGRDRAFT_34379 [Zymoseptoria tritici IPO323]
gi|339476770|gb|EGP91861.1| hypothetical protein MYCGRDRAFT_34379 [Zymoseptoria tritici IPO323]
Length = 685
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 211/669 (31%), Positives = 322/669 (48%), Gaps = 97/669 (14%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE-----GNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ NL V S TG GG L+ ++ + +P L GD +C +GA
Sbjct: 47 VLNLTVSSQRTGFGGKTLLELALDPAVASDSDEIPEHGLRVGD-ICAVAEQPKGAEKKKE 105
Query: 127 IQGFVHNLGEDGC-------TISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERN 179
+G + G +G I+VAL+ D KL+ + LA+ +T++R
Sbjct: 106 REG-MEKRGAEGVITRTNRTNITVALDKEDVDVPNGKLW--------LVKLANDVTHKRL 156
Query: 180 CEALMLLQKNGLHKRNPSIAAVVT--LFGDKEDVTWLEENDLA---DWSEVKLDGIMGKT 234
+ + LQK PS +++T LFG T + E+DL +W++ T
Sbjct: 157 SQTMTRLQK-----MQPSEHSILTQVLFGHSSP-TPISESDLKAAIEWND--------PT 202
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+DSQK AI L R + +I GPPGTGKT L E+I + V+ R+LV P+N +VDN
Sbjct: 203 LNDSQKDAIQFAL-ASREVALIHGPPGTGKTHTLIELILQMVKLKLRLLVCGPSNISVDN 261
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+VE+L+ +N+VR+G+PAR+ P V S S+ + ++ A+ + R + D ++ +
Sbjct: 262 IVERLAPHKVNMVRLGHPARLLPGVLSHSMEYLSRTSDAAAIVTDVRNEMDAKQASIRKT 321
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
++ I LK L K +++E V ++L + VVL+T G+ ++ FD+V
Sbjct: 322 RNGRERRVIYGELKDLRKEYRQREGRVVSDLLRGSGVVLSTLHGSGGYQLKD-QQFDVVI 380
Query: 414 --------------------GKRCILAGDQCQLAPVILS-------------RKALEG-- 438
+ ILAGD QL P I S A EG
Sbjct: 381 VDEASQALEAQCWIPVLSSGASKLILAGDHLQLPPTIKSLNSKTAKKTSTKVENATEGED 440
Query: 439 --GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ +L +R LH + LTTQYRM+D I + S+ +Y G LI++ V + LL D
Sbjct: 441 HVKLETTLFDRLLALHGSKIKRMLTTQYRMHDLIMQYPSEALYEGKLIAAEAVKARLLHD 500
Query: 497 TPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG--------SFYNEGEAEIV 547
P+ V+ T T P++ DT G E+ D +G S NE EA I
Sbjct: 501 LPYEVRKTDDTSEPVVFYDT--AGGDFPEKTED--DNSGAKGKSSLLAESKVNEYEAGIA 556
Query: 548 VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVI 607
HV SLI AGV IA+ +PY Q+ L + L D G+E+ ++D FQGRE +AVI
Sbjct: 557 QLHVKSLIEAGVKAEDIAIITPYNGQLALLSQMLKD--RYPGIELESVDGFQGREKEAVI 614
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGR 666
+S+VRSN VGFL + RR+NVA+TR + + V+ DS TIC + FL + +
Sbjct: 615 VSLVRSNPEHEVGFLAEKRRLNVAMTRPKRALVVIGDSETICRGSKFLKNWMAFLEQKAD 674
Query: 667 VKHAEPGSF 675
+++ +P
Sbjct: 675 LRYPDPSDL 683
>gi|294877934|ref|XP_002768200.1| DNA-binding protein SMUBP-2, putative [Perkinsus marinus ATCC
50983]
gi|239870397|gb|EER00918.1| DNA-binding protein SMUBP-2, putative [Perkinsus marinus ATCC
50983]
Length = 970
Score = 245 bits (626), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 216/725 (29%), Positives = 340/725 (46%), Gaps = 133/725 (18%)
Query: 4 ERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGR 63
+R T++S F + +LL +ERD E+ T E L + D
Sbjct: 7 KRAMTVES----FVELQRKLLVMERDEEVAQTTEVLRSYSNAD----------------- 45
Query: 64 APQELCDTICNLFVVSTSTGLGGMHLVLF-----RVEGNHRLPPTTLSPGDMVCVRVCDS 118
Q+ + L + + STG G L+ F R + LPP S GD+V V S
Sbjct: 46 -LQDRGIVLLKLLLDTVSTGPYGRALLTFGKPAGRGDQRSPLPPNRFSSGDIVGVFGLSS 104
Query: 119 -RGACATSCIQGFVHNLGEDGCTI--------SVALESRHGDPTFS-KLFGKSVRIDRIQ 168
+G + G VH++G+ + + L G P++S L G V R+
Sbjct: 105 HQGFSGEPEVAGVVHSVGQYSVVVVADDAELDTDGLRVGGGAPSYSLALMGSDVTYKRLS 164
Query: 169 GLADTLTYERNCEALML-LQKNGLHKRNPSIAAVVTL-FGDKEDVTWLEENDLADWSEVK 226
+ L +N E + ++ + NP + + L FGD
Sbjct: 165 SMLGKLEKTKNNEIVSCCFGESPIPSLNPRVQEEIPLAFGD------------------- 205
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286
++ Q++A+ L+ PL ++ GPPGTGKT +L I A+Q+ +++LV A
Sbjct: 206 -------NLNEVQRRAVRTCLDAS-PLALVHGPPGTGKTTVLVSYILEAIQRHQKLLVCA 257
Query: 287 PTNAAVDNMVEKLSDVG--LNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKS 344
P+N AVDN++E+++ VG N+VR+G+PAR+ + +L +KLA + ++
Sbjct: 258 PSNVAVDNLLERVTAVGGISNVVRIGHPARVEKGLERYTL----DAKLAQ--NDQQQLVG 311
Query: 345 DLRKDLRQCLKDDSLAA--GIRQLL----KQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
D+RK++ CLK A G R+ + ++L K L+ +E+ V EV+ + VV +T
Sbjct: 312 DIRKEIDSCLKKSKKAKDRGARRAMQGEVRELRKELRSRERRAVSEVIQQSSVVFSTCAA 371
Query: 399 AAD-PLIRRLDT---------FDLV-------------------GKRCILAGDQCQLAPV 429
A L R L+ FD+V G++ +LAGD QLA
Sbjct: 372 AGGRTLARALENGCGDASTRLFDVVVIDEAAQAIEAACWIPLLLGRKAVLAGDHKQLAAT 431
Query: 430 ILSRKALEGGIGVSLLER------AATLHEG--VLATKLTTQYRMNDAIASWASKEMYGG 481
+LS +A +GG+ +L R +T+ EG + + LTTQYRMN+ I W++ + YGG
Sbjct: 432 VLSEEAAKGGLQETLFGRLMEMMEKSTIGEGREMPSVMLTTQYRMNETIMGWSNAQFYGG 491
Query: 482 SLISSSTVASHLLVDTPFVKPTWITQ----CPLLLLDTRLPYGSLSLGCEEHLDLAGTG- 536
L++S +V S L + + W Q PLL +DT + + H D G
Sbjct: 492 HLLASESVKSRTLQE--LTERIWADQEMLSRPLLWIDTAVDW--------MHEDEVGEEE 541
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATI 595
S N E +V ++ L AG+ AV SPY QV +R+ L E V+++
Sbjct: 542 SRSNSAEVALVAKYISFLRAAGIKRDQTAVISPYNRQVGLIRDALKSSTGETDASFVSSV 601
Query: 596 DSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLA 655
DS+QG+E + V++S+VRSN G VGFL D RR+NVA+TRA + + +V DS TI + L
Sbjct: 602 DSYQGQEQEVVVLSLVRSNDAGEVGFLKDYRRLNVAVTRAKRQLVLVGDSETIGADDVLV 661
Query: 656 RLLRH 660
L +
Sbjct: 662 TLYSY 666
>gi|213407736|ref|XP_002174639.1| DNA-binding protein SMUBP-2 [Schizosaccharomyces japonicus yFS275]
gi|212002686|gb|EEB08346.1| DNA-binding protein SMUBP-2 [Schizosaccharomyces japonicus yFS275]
Length = 655
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 200/604 (33%), Positives = 302/604 (50%), Gaps = 58/604 (9%)
Query: 72 ICNLFVVSTSTGLGG-MHLVLFRVEGN---HRLPPTTLSPGDMVCVRVCDSRGA--CATS 125
+ N+ + S TGLGG M L L R G LP + GD+V ++ + + A S
Sbjct: 54 LLNMRIASGRTGLGGKMILELERDAGFCSIPALPAHSFGTGDVVRIQESGASKSLNSADS 113
Query: 126 CIQ--GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEAL 183
I V + E+ TIS+ALE+ P K I LA+ +T+E+ +
Sbjct: 114 SISWDAVVVRVREN--TISLALENDDKIPDGRKRLW-------IFKLANRVTFEKMRSCI 164
Query: 184 MLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAI 243
L K L P ++ L G ++ EE L ++ ++SQKKA+
Sbjct: 165 QQLSKISLESSTPLVS---VLLGMRKSTLASEELALTYYN---------TDLNESQKKAV 212
Query: 244 ALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVG 303
+ ++ L +I GPPGTGKT L E++ + + G+RVLV P+N +VDN+VE+L+ G
Sbjct: 213 SFAVSAPE-LALIHGPPGTGKTHTLVEVVRQFAKLGQRVLVCGPSNLSVDNLVERLAPCG 271
Query: 304 LNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGI 363
+ +VR+G+PAR+ P V + SL + ++ A V + +D K I
Sbjct: 272 IPMVRLGHPARLLPGVVNYSLAYLSRTGNAGEVLRAISQDADALHAKISKTKSGREKREI 331
Query: 364 RQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------- 413
+ ++ L K KK E + V+++++ +QVV AT GA L+ FD+V
Sbjct: 332 YKSIRALNKDYKKYEDKVVRDIIARSQVVFATLHGAGSKLLSH-KQFDVVIIDEASQALE 390
Query: 414 ---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
K+ ILAGD QL P + ++ G VSL E + + + L QY
Sbjct: 391 AQCWIPLLQTKKAILAGDHHQLPPNVRTK-----GRYVSLFESLLSRYGPRVKRFLNVQY 445
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM++ I++++SK Y G L S+V LL D V+ T +T L DT Y
Sbjct: 446 RMHEVISAFSSKSFYEGQLKPDSSVKDRLLKDLSGVEDTDLTNDALYFYDTMHEYFEDEN 505
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
E L S N+ EA+IV +H SL+ AG++PS IA+ +PY AQ LR L +
Sbjct: 506 SVSEKSVLLQM-SKSNQWEAKIVCNHAASLVDAGLNPSEIAIITPYNAQATLLRNLLHE- 563
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
+EV +IDS QGRE +A+I S+VRSN +GF+ + RR+NVAITRA +H+ VV D
Sbjct: 564 -RNLAIEVGSIDSVQGREKEAIIFSLVRSNDEREIGFMSEKRRLNVAITRAKRHLCVVGD 622
Query: 645 SSTI 648
+ T+
Sbjct: 623 AMTV 626
>gi|389641863|ref|XP_003718564.1| DNA helicase [Magnaporthe oryzae 70-15]
gi|351641117|gb|EHA48980.1| DNA helicase [Magnaporthe oryzae 70-15]
Length = 713
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 173/504 (34%), Positives = 258/504 (51%), Gaps = 63/504 (12%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +DSQK AI L K + +I GPPGTGKT L E+I + ++QG R+LV P+N +VD
Sbjct: 214 TLNDSQKDAIRFALASKE-IALIHGPPGTGKTHTLIELILQMLKQGLRILVCGPSNISVD 272
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+VE+L+ + IVR+G+PAR+ P+V SL + ++ A + R + D ++ +
Sbjct: 273 NIVERLAPHKVPIVRLGHPARLLPSVVGHSLDVLTQTSEAGAIVRDVRAEMDAKQASIKK 332
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
K I L +L K + +EK V +L S++VVLAT G+ +R+ + FD+V
Sbjct: 333 TKSGRERKAIYGELHELRKEFRDREKRCVANLLQSSKVVLATLHGSGGFQLRQ-EKFDVV 391
Query: 414 -------------------GKRCILAGDQCQLAPVILS-----RKALEGGIG-------- 441
K+ +LAGD QL P I S K GG G
Sbjct: 392 IIDEASQALEAQCWVALLSAKKAVLAGDHLQLPPTIKSLNSKAAKTATGGDGSGTADGEE 451
Query: 442 ---------------VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISS 486
+L +R LH + LTTQYRM++ I + S E+YGG L+++
Sbjct: 452 SSAGQSRKKKGVTLETTLFDRLLDLHGPAIKRMLTTQYRMHEKIMRFPSDELYGGRLVAA 511
Query: 487 STVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTG------ 536
V LL D P+ V+ T T PL+ +DT+ P + + + D T
Sbjct: 512 EAVKERLLKDLPYKVEDTDDTSEPLIFIDTQGGDFPERNDEMDNGDADDKKKTKRMLLHG 571
Query: 537 -SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATI 595
S NE EA +V HV SL+ AGV P IA +PY AQ+ L L D G+E+ ++
Sbjct: 572 ESKSNEMEAALVAQHVRSLVDAGVKPEDIACITPYNAQLAVLAPLLKD--RFPGIELGSV 629
Query: 596 DSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FL 654
D FQGRE +AV++S+ RSN G VGFLG+ RR+NVA+TR + + V+ DS T+ + FL
Sbjct: 630 DGFQGREKEAVVVSLCRSNPDGEVGFLGERRRLNVAMTRPKRSLTVIGDSETVKRGSKFL 689
Query: 655 ARLLRHIRYFGRVKHAEPGSFGGS 678
+ H+ +++ + + G+
Sbjct: 690 KGWMEHLEENADLRYPDVSTIQGA 713
>gi|108758058|ref|YP_634107.1| DNA helicase [Myxococcus xanthus DK 1622]
gi|108461938|gb|ABF87123.1| putative DNA helicase [Myxococcus xanthus DK 1622]
Length = 639
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 172/467 (36%), Positives = 252/467 (53%), Gaps = 44/467 (9%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+ + Q+ A A L + ++ GPPGTGK+ +L E+ A+AV G+R+L TA +NAAV
Sbjct: 179 RPLNPEQQDATARALAAE-DFFLVHGPPGTGKSTVLAEVAAQAVADGKRLLCTAASNAAV 237
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKSDL---R 347
D++++ D GL +RVG+PAR++ + +L +V+S V+ F+ S L R
Sbjct: 238 DHLLDLCLDKGLRAIRVGHPARVAARLQEHTLDIVVESHPDRAVSRDLFDEAFSLLGYAR 297
Query: 348 KDLRQCLKDDSLAAGIRQLLKQLGKTLKKK--EKETVKEVLSSAQVVLAT---------- 395
+ Q + A + G + + E++ VK VL++A V+ T
Sbjct: 298 RQRNQGRSRERFANARASTTEAKGMLDEARALERKAVKSVLANADVICVTLSSLDSGVLS 357
Query: 396 -----------NTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
T A +PL L F L R ILAGD QL P +LS++A + G+GVSL
Sbjct: 358 GQQFDLALLDEATQATEPLA--LLGF-LRAPRVILAGDPQQLPPTVLSQEAAKAGLGVSL 414
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
ER H + L QYRMN I + S+EMYGG L + ++A L D
Sbjct: 415 FERLLKDHGEGVKRMLREQYRMNARIMDFPSREMYGGELRAHPSIADRTL-DAVLTPGAD 473
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
+ P+L LDT G +E ++ T S +N GEA +V V +L+ AG++P +
Sbjct: 474 VDAPPVLYLDT------AGKGFDEEVE-PTTRSLFNPGEAGLVEARVRALLAAGLAPREL 526
Query: 565 AVQSPYVAQVQHLRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
AV +PY AQ LRER++ L PE VEV T+D+FQGRE DA+I+S+ RSN+ G +GFL
Sbjct: 527 AVITPYSAQAHQLRERIEALSPE---VEVDTVDAFQGREKDAIIVSLTRSNSEGQLGFLT 583
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
D RRMNVA+TRA +H+ VV DS+T+ + F AR + + G + A
Sbjct: 584 DLRRMNVALTRARRHLFVVGDSATLSGHPFYARFVEGTQTHGGYRSA 630
>gi|212526278|ref|XP_002143296.1| DNA helicase, putative [Talaromyces marneffei ATCC 18224]
gi|210072694|gb|EEA26781.1| DNA helicase, putative [Talaromyces marneffei ATCC 18224]
Length = 713
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 172/485 (35%), Positives = 258/485 (53%), Gaps = 54/485 (11%)
Query: 221 DWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE 280
D+ + + T +DSQK+AI L K + +I GPPGTGKT L E+I + ++
Sbjct: 218 DYDAIGTVDFIDPTLNDSQKEAIRFALASKE-IALIHGPPGTGKTHTLIELILQMTRRDM 276
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
R+LV P+N +VDN+VE+L+ + IVRVG+PAR+ P+V SL + ++ A+ +
Sbjct: 277 RILVCGPSNVSVDNIVERLTPHKVPIVRVGHPARLLPSVLDHSLEVLTQTSEAAEIVRDV 336
Query: 341 RKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA 400
RK+ D ++ + ++ I LK+L K +++E + V+ +++ ++VVLAT GA
Sbjct: 337 RKEIDEKQASIRKTRNGRERREIYGDLKELRKEFRERESKCVENLVTGSKVVLATLHGAG 396
Query: 401 DPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILS--------- 432
++ FD+V R +LAGD QL P I S
Sbjct: 397 GHQLKN-QKFDVVIIDEASQALEAQCWIPLLTASRAVLAGDHLQLPPTIKSTNIDAKKIS 455
Query: 433 --------RKALEGGIGVSL----LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYG 480
+ + E GVSL +R LH + LTTQYRM++ I + S E+Y
Sbjct: 456 KSKAKEAEKDSSESLKGVSLEKTMFDRLLALHGPSIKRMLTTQYRMHEKIMQFPSNELYE 515
Query: 481 GSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG--- 536
G LI++ +V LL D P+ V+ T T+ PL+ +DT+ G E D A G
Sbjct: 516 GKLIAADSVKGRLLKDLPYGVEETDDTKEPLVFIDTQ---GDDFPEKAEDEDTAVKGGPI 572
Query: 537 --SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVAT 594
S NE EA I + HV LI AGV P IAV +PY AQV + + L + + G+E+ +
Sbjct: 573 SESKSNEMEARIAIRHVEGLIDAGVRPEDIAVVTPYNAQVALIAQSLKE--KYPGIEIGS 630
Query: 595 IDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-F 653
+D FQGRE +A+++S+VRSN VGFLG+ RR+NVA+TR +H+ V DS TI + F
Sbjct: 631 VDGFQGREKEAIVVSLVRSNEKHEVGFLGEKRRLNVAMTRPKRHLCVCGDSETISKGSKF 690
Query: 654 LARLL 658
L +
Sbjct: 691 LKNWM 695
>gi|255939099|ref|XP_002560319.1| Pc15g00940 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584941|emb|CAP82980.1| Pc15g00940 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 716
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 168/489 (34%), Positives = 258/489 (52%), Gaps = 53/489 (10%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
+ +DSQK+AI L R + +I GPPGTGKT L E+I + VQ+ +RVLV P+N +VD
Sbjct: 233 SLNDSQKEAIQFAL-ASRDIALIHGPPGTGKTHTLIELILQLVQRRKRVLVCGPSNVSVD 291
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+VE+L+ + +VR+G+PAR+ P+V SL + ++ A + + RK+ D ++ +
Sbjct: 292 NIVERLAPKKVPVVRIGHPARLLPSVLEHSLEVLTQTSDAGGIVKDIRKEIDEKQASIRK 351
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
+ GI LK L K +++E + V ++ + VVLAT GA ++ FD+V
Sbjct: 352 TRSGRERRGIYDDLKLLRKEFRERESKCVDNLVRESSVVLATLHGAGGHQLKN-QKFDVV 410
Query: 414 -------------------GKRCILAGDQCQLAPVILS---------RKALEGGIG---- 441
+ +LAGD QL P + S K E G
Sbjct: 411 IIDEASQALEAQCWIPLLGADKVVLAGDHLQLPPTVKSTGQNSKDQTSKGTEEKTGNNTD 470
Query: 442 ----------VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
+L +R LH + LTTQYRM++ I + S E+Y L++S V +
Sbjct: 471 TETLKGVSLERTLFDRLLALHGPGIKRMLTTQYRMHEKIMRFPSDELYEEKLMASDAVKA 530
Query: 492 HLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT---GSFYNEGEAEIV 547
LL+D P+ V+ T TQ PL+ DT+ G E+ + G S NE EA +V
Sbjct: 531 RLLIDLPYEVEGTDDTQEPLVFWDTQ--GGDFPEKAEDEISQKGALLGDSKSNEMEAMVV 588
Query: 548 VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVI 607
HV +LI AG+ P +IAV +PY Q+ L L + + AG+E+ ++D FQGRE +AV+
Sbjct: 589 ARHVDNLIDAGIRPESIAVITPYNGQLALLSRMLRE--KYAGLELGSVDGFQGREKEAVV 646
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH-NTFLARLLRHIRYFGR 666
+S+VRSN VGFLG+ RR+NVA+TR +H+ + DS TI H ++FL + +
Sbjct: 647 VSLVRSNAEHEVGFLGEKRRLNVAMTRPKRHLCICGDSETISHGSSFLKHWMNFLEENAD 706
Query: 667 VKHAEPGSF 675
+++ + G
Sbjct: 707 LRYPDAGDL 715
>gi|268324732|emb|CBH38320.1| putative ATP-dependent helicase [uncultured archaeon]
Length = 658
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 197/708 (27%), Positives = 329/708 (46%), Gaps = 131/708 (18%)
Query: 14 DEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTIC 73
+++ +EL+ +ER+ ++ +EE+ + + E D + FL+ G+
Sbjct: 4 NKYIGHFTELVELEREEQMRLHEEEMRRL-SGREREDRGRA--FLMMKGK---------- 50
Query: 74 NLFVVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVR---VCDSRGACATSCIQG 129
S GLGG HLV FR + LP + + GD+V + + D T
Sbjct: 51 -----SQDLGLGGKHLVKFRKQTAGTTLPESEIEVGDLVLISKTSLWDEDNPLGTVA--- 102
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
+ + ++ + + P F ++ K +RID + +T++R EAL ++
Sbjct: 103 -------EKTSYAITIAFDNAPPGF--VYRKDLRIDL---FVNDITFQRMIEALKQFKRL 150
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+++ + F + + + + SQ++A+ L
Sbjct: 151 PRWRKDKLLGNTAPAFTQVDKIEFF-----------------NSKLNKSQQEAVIRSL-A 192
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
R +I GPPGTGKT E+IA+ +++G ++L A +N AVDN+VE+L +G+N+VR+
Sbjct: 193 ARDFFLIHGPPGTGKTITCVEVIAQLIKRGNKILTAADSNVAVDNLVERLDRIGVNVVRI 252
Query: 310 GNPARISPAVASKSLGEIVKSKLASFVA-EFERKKSDLRKDL----------RQCLKDDS 358
G+PARI PA+ +SL +V+ + A EF ++ +L++D+ R+ L D+
Sbjct: 253 GHPARIIPALRRRSLDYLVQDEPDYRKAQEFRKRAYELKEDMKRYIMPEMRWRRGLSDEE 312
Query: 359 L---------AAGI--------------RQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT 395
+ GI + L +L ++ E+ ++ ++ +A V+ T
Sbjct: 313 IMLLASEGATTRGIPLKKIEGMKKWLDLKHELDRLFGDARELEERAIRRIIKAAAVICTT 372
Query: 396 NTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKAL 436
N+ A +++ + FD L KR I+AGD QL P +L+ +A
Sbjct: 373 NSTAGSEILKG-EKFDFAVIDEATQSTEPSALIAVLKAKRFIMAGDHKQLPPTVLNEEAA 431
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
SL ER LH + L QYRMN+ IA + + E Y G L + V L+D
Sbjct: 432 CRSFTKSLFERLLALHGDKIRVMLDVQYRMNEEIAEFPNWEFYDGKLKADEQVKRRTLMD 491
Query: 497 TPFVKPTWITQ-----CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV 551
+ P + + P L +DT G+ L EE + G+ S N GEA +V
Sbjct: 492 ---ILPESVDEESEDVKPFLFIDT---GGNAEL--EERVR-KGSTSRENPGEARLVKDVA 542
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
L+ G+ P IAV SPY QV H++ L G+E+ T+D FQGRE + VI+S V
Sbjct: 543 ERLLNRGIRPEDIAVISPYDDQVVHIKRML----HVEGLEIKTVDGFQGREKEVVIVSFV 598
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI----CHNTFLA 655
RSN +GFL D RR+NV+ITRA + + ++ DS+T+ C+ +A
Sbjct: 599 RSNKSRTIGFLKDLRRLNVSITRAKRKLVLIGDSNTLESEGCYRRLVA 646
>gi|442323516|ref|YP_007363537.1| DNA helicase [Myxococcus stipitatus DSM 14675]
gi|441491158|gb|AGC47853.1| DNA helicase [Myxococcus stipitatus DSM 14675]
Length = 637
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 207/639 (32%), Positives = 308/639 (48%), Gaps = 73/639 (11%)
Query: 61 HGRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRG 120
H R Q L ++ +L V GLGG L+ RLP + L GD+V V R
Sbjct: 36 HEREEQGL--SVLDLETVEEEVGLGGRVLLTLARADRSRLP-SRLHNGDLVAVL---PRR 89
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
A + + V + L P + + +R+D + + +TYER
Sbjct: 90 AEVSEPAKALVSR----ASATRLQLAFDRSPPPY--VHEGLLRLDVV---PNDVTYERMR 140
Query: 181 EALMLLQ--KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDS 238
L ++ GL +R + L G++ T + D G+ +
Sbjct: 141 TGLQRVKAMDKGLERRKREV-----LLGNEPPRT-----------DKPRDFEPGRPLNPE 184
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
Q A+ L + ++ GPPGTGK+ +L E+ A+AV +G+R+L TA +NAAVD++++
Sbjct: 185 QLDAVGRALAAE-DFFLVHGPPGTGKSTVLAEVAAQAVARGQRLLCTAASNAAVDHLLDL 243
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKSDLRKDLRQCLKD 356
GL VRVG+PAR++ + +L +V+ V+ F+ S L RQ +
Sbjct: 244 CLGQGLRAVRVGHPARVAARLQEHTLDIVVEEHPDRVVSRELFDEAFSLLGYARRQRTQG 303
Query: 357 DSLA--AGIRQLLKQLGKTLKKK---EKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
S A + R + L + E++ V+ VL++A VV T + D + + FD
Sbjct: 304 RSRARFSNARASTTEAKAMLDEARALERKAVRSVLATADVVCVT-LASLDSGVLSGEQFD 362
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
L ILAGD QL P +LS+ A G+ VSL ER H
Sbjct: 363 LALLDEATQATEPLALLGFLRAPIVILAGDPQQLPPTVLSQDAARAGLAVSLFERLLADH 422
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP-TWITQCPLL 511
+ L QYRMN I + S+EMYGG L + +VA L D + P T + P+L
Sbjct: 423 GDGVKRMLLEQYRMNTRIMDFPSREMYGGQLRAHPSVADRTLADV--LPPGTEVDAPPVL 480
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
LDT G +E ++ T S +N GEA+++ V +L+ G+S +AV +PY
Sbjct: 481 FLDT------AGKGFDEEVE-PTTRSLFNTGEADLIEARVRALLALGLSQRELAVITPYS 533
Query: 572 AQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
AQ LRERL+ A VEV T+D+FQGRE DAV++S+ RSN+ G VGFL D RRMNVA
Sbjct: 534 AQAHRLRERLESF--APDVEVDTMDAFQGREKDAVLVSLTRSNSEGQVGFLNDLRRMNVA 591
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+TRA +H+ VV DS+T+ + F AR + + G + A
Sbjct: 592 LTRARRHLFVVGDSATLSGHPFYARFIEESQAHGGYRSA 630
>gi|241713544|ref|XP_002412098.1| DNA-binding protein Smubp-2, putative [Ixodes scapularis]
gi|215505175|gb|EEC14669.1| DNA-binding protein Smubp-2, putative [Ixodes scapularis]
Length = 593
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 197/565 (34%), Positives = 278/565 (49%), Gaps = 117/565 (20%)
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V N+ + T++ D L G R + LA+ +TY R L L K
Sbjct: 21 GVVSNVSQTDVTVAF-------DEGRDALDGDDGRTFHLLKLANDVTYRRLRRTLEKLSK 73
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
+ R S+ V LFG + EN A+ S DDSQ++A+ L
Sbjct: 74 DK-EVRYSSLVEV--LFG----TSTPGEN--AESSSTPPLDFYNDNLDDSQREAVRFSL- 123
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++R L +I GPPGTGKT L E+I + +QG +
Sbjct: 124 RQRELAVIHGPPGTGKTTTLVEVIQQCAKQGAK--------------------------- 156
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ ASK+ K+K A + + + K S+LRK+
Sbjct: 157 ---------SAASKN-----KAKDAYY--KVQGKLSELRKE------------------- 181
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRL--DTFD------------- 411
LK++E++ + VL++A VVL+T T A+D PL R L F+
Sbjct: 182 -----LKERERKAMGRVLTNADVVLSTLTSASDDGPL-RNLPRSHFEVAVVDECSQALEA 235
Query: 412 ------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
L +CILAGD QL P I+S A + G+ V+L+ERA L+ + L QYR
Sbjct: 236 ACWMALLRAPKCILAGDHLQLPPTIVSETAAKEGLAVTLMERALILYGDSIKRMLNMQYR 295
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ AI W+S +Y G L++ S+VASHLL D P V+ T PLLL+DT S S+
Sbjct: 296 MHGAIMKWSSNRLYEGRLVAHSSVASHLLRDLPGVEDNDDTATPLLLIDT----ASCSM- 350
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
LD S NEGEA++V HV LI +GV S+IAV SPY QV+ +R RL
Sbjct: 351 --TELDTPDDESKGNEGEADLVAIHVERLISSGVDASSIAVISPYNLQVELIRLRLSS-- 406
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
G+EV ++D FQGRE +AV++S+VRSN G VGFL + RR+NVA+TRA +HVAV+CD+
Sbjct: 407 RHPGLEVRSVDGFQGREKEAVVMSLVRSNDAGNVGFLAEDRRINVAVTRARRHVAVICDT 466
Query: 646 STICHNTFLARLLRHIRYFGRVKHA 670
T+ + FL L+ ++ G V+ A
Sbjct: 467 VTVSRHDFLKSLVDYLSSEGEVRSA 491
>gi|85090568|ref|XP_958479.1| hypothetical protein NCU07395 [Neurospora crassa OR74A]
gi|28919845|gb|EAA29243.1| hypothetical protein NCU07395 [Neurospora crassa OR74A]
Length = 716
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 191/556 (34%), Positives = 285/556 (51%), Gaps = 67/556 (12%)
Query: 170 LADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKE------DVTWLEENDLADWS 223
LAD +TY R + LQK + + I LFG D+T E DW
Sbjct: 176 LADDVTYRRMNGTMEKLQKMSESEHSMFIR---VLFGQSSPSPVPADLTNDPEVGNIDW- 231
Query: 224 EVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVL 283
+ T +DSQK AI L R + +I GPPGTGKT L E+I + +++ R+L
Sbjct: 232 -------VDPTLNDSQKDAIRFAL-ASREIALIHGPPGTGKTHTLIELILQLLRRDLRIL 283
Query: 284 VTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKK 343
V P+N +VDN+VE+LS L I+R+G+PAR+ P+V S SL + + A + + R +
Sbjct: 284 VCGPSNISVDNIVERLSPHKLPILRLGHPARLLPSVLSHSLDILTTTSDAGAIVKDVRAE 343
Query: 344 SDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPL 403
D ++ + ++ I LK+L K +++E+ V +++ ++VVLAT GA
Sbjct: 344 MDAKQASIRKTRNGRERRAIYAELKELRKEYRERERRCVSDLVGRSKVVLATLHGAGGYQ 403
Query: 404 IRRLDTFDLV-------------------GKRCILAGDQCQLAPVILS--------RKAL 436
++ + FD+V K+ +LAGD QL P I S ++
Sbjct: 404 LKN-EEFDVVIIDEASQALEAQCWVPLLWAKKAVLAGDHLQLPPTIKSLNSRAATTKEKK 462
Query: 437 EG-GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV 495
EG + +L +R TLH + LTTQYRM++ I + S E+Y L+++ V LL
Sbjct: 463 EGQTLETTLFDRLLTLHGPSIKRMLTTQYRMHEKIMRFPSDELYESKLVAAEHVRERLLK 522
Query: 496 DTPF--VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG------------SFYNE 541
D P+ V+ T PL+ +DT+ G EE LD G+ S NE
Sbjct: 523 DLPYEGVEANDDTTEPLIFIDTQ--GGDFPEKNEEELDGNGSTDKKKVIRSLHGESKSNE 580
Query: 542 GEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGR 601
EA +V HV LI AGV P IAV +PY AQ+ L D+ P G+E+ ++D FQGR
Sbjct: 581 MEAALVRQHVRGLIKAGVRPDDIAVVTPYNAQLSILAPLKDEFP---GIELGSVDGFQGR 637
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH-NTFLARLLRH 660
E +AVI+S+VRSN G VGFLG+ RR+NVA+TR + + V+ DS T+ +TFL R +
Sbjct: 638 EKEAVIVSLVRSNDEGEVGFLGEKRRLNVAMTRPKRSLTVIGDSETVKKGSTFLKRWMEF 697
Query: 661 IRYFGRVKHAEPGSFG 676
+ +++ + S
Sbjct: 698 LEENADLRYPDVSSLA 713
>gi|383458482|ref|YP_005372471.1| putative DNA helicase [Corallococcus coralloides DSM 2259]
gi|380730970|gb|AFE06972.1| putative DNA helicase [Corallococcus coralloides DSM 2259]
Length = 653
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 209/635 (32%), Positives = 300/635 (47%), Gaps = 105/635 (16%)
Query: 71 TICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGF 130
++ +L V GLGG L+ RLP T +S GD+V V R A +
Sbjct: 56 SVLDLETVEEEVGLGGRILLTLARADRGRLP-TRVSNGDLVAVL---PRRAEVKDPAKAL 111
Query: 131 VHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK-- 188
V + + L P + L +R+D + + +TYER L ++
Sbjct: 112 VSR----ATSTRIQLAFDREPPAY--LSEGLLRLDVV---PNDVTYERVRAGLQRVKAMD 162
Query: 189 --NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
HKR + F + +D T + + Q+ A
Sbjct: 163 KGQERHKREVLLGNEPPRFDNTKDFT------------------PTRPLNPEQQDAAMRA 204
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L + ++ GPPGTGK+ +L E+ A+AV +GER+L TA +NAAVD+++E + GL
Sbjct: 205 LAAE-DFFLVHGPPGTGKSTVLAEVAAQAVARGERLLCTAASNAAVDHLLELCLEQGLRA 263
Query: 307 VRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL----------RQCLKD 356
+RVG+PAR++ + +L +V+ V+ R D DL + +
Sbjct: 264 IRVGHPARVAARLQEHTLDIVVEEHPDRVVS---RDLFDEAFDLFGYARRQRSQGRSRER 320
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT--------------------- 395
S A K L +K EK+ VK VL+ A VV T
Sbjct: 321 FSNARSSTAEAKDLMDEARKLEKKAVKAVLARADVVCVTLASLGSGVLAGEEFDRALLDE 380
Query: 396 NTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
T A +PL L F L + +LAGD QL P +LS++A + G+G SL ER H
Sbjct: 381 ATQATEPLA--LLGF-LRAPKVVLAGDPQQLPPTVLSQEAAKAGLGTSLFERLLQDHGDE 437
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-----------VDTPFVKPTW 504
+ L QYRMN AI ++ SKEMYGG L + +VA L VD P
Sbjct: 438 VKRMLREQYRMNAAIMAFPSKEMYGGELRAHPSVADRTLSSVLDSGSGAEVDAP------ 491
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
P+L LDT G +E ++ T S N GEA V+ V L+ G++P +
Sbjct: 492 ----PVLYLDT------AGKGFDEEVE-PTTHSLLNPGEATYVIARVRQLLSLGLAPREV 540
Query: 565 AVQSPYVAQVQHLRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
AV +PY AQ +HLRE L+ + PE VEV T+D+FQGRE DA+++SM RSN+ G +GFL
Sbjct: 541 AVIAPYSAQARHLREALEAVHPE---VEVDTVDAFQGREKDAILVSMTRSNSEGQLGFLN 597
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
D RRMNVA+TRA +H+ VV DS+T+ + F AR +
Sbjct: 598 DLRRMNVALTRARRHLFVVGDSATLSSHPFYARFI 632
>gi|254167906|ref|ZP_04874755.1| DNA helicase, putative [Aciduliprofundum boonei T469]
gi|289596630|ref|YP_003483326.1| DNA helicase [Aciduliprofundum boonei T469]
gi|197623197|gb|EDY35763.1| DNA helicase, putative [Aciduliprofundum boonei T469]
gi|289534417|gb|ADD08764.1| DNA helicase [Aciduliprofundum boonei T469]
Length = 655
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 212/723 (29%), Positives = 327/723 (45%), Gaps = 150/723 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+D + S+L+ +ER+ E+ EE+ + G+ ++L I
Sbjct: 6 IDSYISYFSKLINLEREEEMRRHWEEIKKLS------------------GKKREKLGRAI 47
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL GLGG +LV F +P + GD+V V + G + Q V+
Sbjct: 48 LNLKGKFIGRGLGGAYLVKF---SRKDMPENEIMVGDIVIVSI----GKVSPKNPQATVY 100
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ-KNGL 191
G+ +S + P F ++ + VRID A+ +T++R AL L+ +N L
Sbjct: 101 EKGKRYIILSFSKRP----PKF--VYSRGVRIDL---YANDITFQRMLSALQSLKDENKL 151
Query: 192 HKR-------NPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIA 244
R NP + V G K LE L ++ ++ ++G
Sbjct: 152 RLRAILLGNANPELCKV----GIK-----LENRRLNNFQRKAVESLIGSE---------- 192
Query: 245 LGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGL 304
L +I GPPGTGKT L E I + V++G RVL TA +N AVDN+VEKL+ +
Sbjct: 193 --------LFLIHGPPGTGKTTTLAEGIIQMVKKGYRVLATADSNVAVDNLVEKLAH-KV 243
Query: 305 NIVRVGNPARISPAVASKSLGEIVKSKLASFVA-EFERKKSDLRKD----------LRQC 353
N+VRVG+PARI ++ +L IV + A E K D+R + R+
Sbjct: 244 NVVRVGHPARIGKSIIEHTLDYIVAQDIEYKKAMEIWEKIDDMRAEQEKYKKPTPQWRRG 303
Query: 354 LKDDSLAA-----------------------GIRQLLKQLGKTLKKKEKETVKEVLSSAQ 390
+ DD + I++ +++ K KK E++ +K VL +A
Sbjct: 304 MGDDEIVYLANASRSYRGVPVEIMKNMAQWIKIQRRIEEYVKKAKKMEEKVIKRVLKNAD 363
Query: 391 VVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVIL 431
V+ TN+ A L+ +D FD V G R I+AGD QL P I+
Sbjct: 364 VICTTNSTAGSELLYNMD-FDFVVIDEATQSIEPSCLIPMIKGDRYIMAGDHRQLPPTIM 422
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
S KA + ++L ER L+ L+ L QYRMN+ I + SK Y LI+ +V +
Sbjct: 423 SYKA--KALQLTLFERFIKLYPH-LSITLRVQYRMNEKIMKFPSKLFYKDLLIAHPSVKN 479
Query: 492 HLLVDTPF--------VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGE 543
+ D ++ Q ++ LD + C+E G+ S+YNE E
Sbjct: 480 RSIEDLGVSAENLEEPMRSICEPQSIIVFLDMQ--------NCKEE-KRGGSTSYYNECE 530
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
AE V V L+ G+ I + +PY QV LR ++D +E+ ++D FQGRE
Sbjct: 531 AETVKDTVDCLLKIGLKEKHIGIITPYDDQVDLLRSMIED------IEIKSVDGFQGREK 584
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRY 663
D +IIS VRSN G +GFL D RR+NVAITRA + + ++ ++ T+ N +L+ + R
Sbjct: 585 DVIIISFVRSNDKGDIGFLDDLRRLNVAITRAKRKLIMLGNAKTLSSNEVYTKLIDYTRS 644
Query: 664 FGR 666
G+
Sbjct: 645 EGK 647
>gi|452824984|gb|EME31983.1| DNA helicase, putative [Galdieria sulphuraria]
Length = 907
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 162/506 (32%), Positives = 261/506 (51%), Gaps = 66/506 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+ SQ +A +G K P+ +I GPPGTGKT L +I + +Q+GE +LV AP+N AVDN
Sbjct: 202 LNSSQNQACFMG-TWKYPITVIHGPPGTGKTTTLVALIRKLLQRGETLLVCAPSNVAVDN 260
Query: 295 MVEKL--SDVGLNIVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLRKDLR 351
++E L + ++ +R+G+PAR + + S+ ++ ++ + + E + + + L
Sbjct: 261 VMEMLIKKEPHISALRIGHPARYNSELYKYSMAYQMKENDQGKLLKDIEMEMVSVERSLE 320
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR----- 406
KD +++ K L K K+++ + + Q++ T GA D +
Sbjct: 321 HA-KDRHQQYEWKKVRKSLQKEWKERKSLAMCQSFQQTQIIFCTCAGAGDWTMESLFSNH 379
Query: 407 -------LDTFD----------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVS 443
LDT L GKR ILAGD QL P +LS++A+E G+ S
Sbjct: 380 SRLGRNGLDTIIIDEAGQALESLCWIPLLKGKRAILAGDPFQLPPTVLSQRAIENGLAKS 439
Query: 444 LLER---AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
+L+R L + +++ L QYRM+ I+ W+S Y G L V HLL D P V
Sbjct: 440 ILDRIFQHKQLEQSIVSV-LQIQYRMHLCISEWSSHTFYRGLLSPDKDVECHLLCDLPGV 498
Query: 501 KPTWITQCPLLLLDTRLPYGSLSLGC-----------EEHLD----LAGTGSFYNEGEAE 545
+ T+ PLL +DT GC +E D L G S N E +
Sbjct: 499 RRDRNTEIPLLWIDT--------AGCDCIEETESSFADEQTDSFAFLLGYESKRNRNEVQ 550
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+ H+ L+ A V P I + SPY AQ++ LR+R+ L E +E++T+D FQGRE +A
Sbjct: 551 LCFQHLEELLDAKVEPKQIGIISPYAAQIRELRQRIAKLSEE--IEISTVDGFQGREKEA 608
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+I+S+VRSN + +GFL D RR+NVAITRA +H+ ++ +S + ++ L++L+ + G
Sbjct: 609 IILSLVRSNDIQELGFLTDYRRINVAITRARRHICIIGNSDMMEKDSVLSQLVSYCFENG 668
Query: 666 RVKHA---EPGSFGGSGLGMDPMLPS 688
+++A +P + G + P LP+
Sbjct: 669 EIRYATEYDP-TLQGEEILKQPQLPT 693
>gi|156061925|ref|XP_001596885.1| hypothetical protein SS1G_03108 [Sclerotinia sclerotiorum 1980]
gi|154700509|gb|EDO00248.1| hypothetical protein SS1G_03108 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 702
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 164/468 (35%), Positives = 257/468 (54%), Gaps = 50/468 (10%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
+ +DSQK AI L K + +I GPPGTGKT L E+I + ++QG RVLV P+N +VD
Sbjct: 223 SLNDSQKHAIRFALASKE-IALIHGPPGTGKTHTLIELILQMLKQGLRVLVCGPSNISVD 281
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+VE+L+ + I+R+G+PAR+ P+V + SL + ++ A+ + + RK+ D ++ +
Sbjct: 282 NIVERLAPHKVPILRLGHPARLLPSVVNHSLDVLTQTSEAAAIVQDVRKEMDTKQASIKK 341
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
K I LK+L K +++E++ V ++ ++VVLAT GA +R + FD+V
Sbjct: 342 TKSGRERKAIYGDLKELRKEFRERERKCVNTLVKGSKVVLATLHGAGGYQLRD-ENFDVV 400
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKA--------------LEG-G 439
+ +LAGD QL P I S + ++G
Sbjct: 401 IIDEASQALEAQCWVPLLSAGKVVLAGDHLQLPPTIKSLNSKTKTNPQSTETESIIKGMT 460
Query: 440 IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+ +L +R LH + LTTQYRM+D I + S E+Y L+++ V + LL + P+
Sbjct: 461 LETTLFDRLLKLHGIRIKVMLTTQYRMHDKIMRFPSDELYESKLVAAEAVKARLLTELPY 520
Query: 500 -VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTG----SFYNEGEAEIVVHHV 551
V+ T T PL+ DT+ P S G ++ AG G S NE EA +V HV
Sbjct: 521 DVEETEDTIEPLIFFDTQGGDFPEKSEEEGVDKK---AGKGMLGESKSNEMEAALVRRHV 577
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
+L+ AG+ P IAV +PY AQ+ + + + G+E+ ++D FQGRE +A+I+S+V
Sbjct: 578 QNLVDAGLKPEDIAVVTPYNAQLALMARSMKQV--FPGIELGSVDGFQGREKEAIIVSLV 635
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLL 658
RSN+ VGFLG+ RR+NVA+TR + + V+ DS T+ + FL R +
Sbjct: 636 RSNSEYEVGFLGEKRRLNVAMTRPRRSLTVIGDSETVSRGSKFLKRWM 683
>gi|254167856|ref|ZP_04874705.1| DNA helicase, putative [Aciduliprofundum boonei T469]
gi|197623147|gb|EDY35713.1| DNA helicase, putative [Aciduliprofundum boonei T469]
Length = 655
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 213/730 (29%), Positives = 332/730 (45%), Gaps = 164/730 (22%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+D + S+L+ +ER+ E+ EE+ + G+ ++L I
Sbjct: 6 IDSYISYFSKLINLEREEEMRRHWEEIKKLS------------------GKKREKLGRAI 47
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL GLGG +LV F +P + GD+V V S G + Q V+
Sbjct: 48 LNLNGKFIGRGLGGAYLVKF---SRKDMPENEIMVGDIVIV----SSGKVSPKNPQATVY 100
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ-KNGL 191
G+ +S + P F ++ + VRID A+ +T++R AL L+ +N L
Sbjct: 101 EKGKRYIILSFSKRP----PKF--VYSRGVRIDL---YANDITFQRMLSALQSLKDENKL 151
Query: 192 HKR-------NPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIA 244
R NP + V +KL+ + ++ QKKA+
Sbjct: 152 RLRTLLLGNANPELCKV----------------------GIKLEN---RRLNNFQKKAVE 186
Query: 245 LGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGL 304
+ + L +I GPPGTGKT L E I + V++G +VL TA +N AVDN+VEKL+ +
Sbjct: 187 SLIGSE--LFLIHGPPGTGKTTTLAEGIIQMVKKGYKVLATADSNVAVDNLVEKLAH-KV 243
Query: 305 NIVRVGNPARISPAVASKSLGEIVKS------------KLASFVAEFERKKS-------- 344
N+VRVG+PARI ++ +L IV K+ + AE E+ K
Sbjct: 244 NVVRVGHPARIGKSIIEHTLDYIVAQDIEYKKAMEIWEKIDNMRAEQEKYKKPTPQWRRG 303
Query: 345 ---------------------DLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVK 383
D+ K++ Q +K I++ +++ K KK E++ +K
Sbjct: 304 MGDDEIVYLANASRSYRGVPVDIMKNMAQWIK-------IQRRIEEYVKKAKKMEEKVIK 356
Query: 384 EVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQC 424
VL +A V+ TN+ A L+ +D FD V G R I+AGD
Sbjct: 357 RVLKNADVICTTNSTAGSELLYDMD-FDFVVIDEATQSIEPSCLIPMIKGDRYIMAGDHR 415
Query: 425 QLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI 484
QL P I+S KA + ++L ER L+ L+ L QYRMN+ I + SK Y LI
Sbjct: 416 QLPPTIMSYKA--KALQLTLFERFIKLYPH-LSITLRVQYRMNEKIMKFPSKLFYNDLLI 472
Query: 485 SSSTVASHLLVDTPF--------VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG 536
+ +V + + D ++ Q ++ LD + C+E G+
Sbjct: 473 AHPSVKNRSIEDLGVSAENLEEPMRSICEPQSIIVFLDMQ--------NCKEE-KRRGST 523
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATID 596
S+YNE EA +V V L+ G+ I + +PY QV LR ++D +E+ ++D
Sbjct: 524 SYYNECEAGMVKDTVDCLLKIGLKEKHIGIITPYDDQVDLLRSMIED------IEIKSVD 577
Query: 597 SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLAR 656
FQGRE D +IIS VRSN G +GFL D RR+NVAITRA + + ++ ++ T+ N A+
Sbjct: 578 GFQGREKDVIIISFVRSNDKGDIGFLDDLRRLNVAITRAKRKLIMLGNAKTLSSNEVYAK 637
Query: 657 LLRHIRYFGR 666
L+ + R G+
Sbjct: 638 LIDYTRSEGK 647
>gi|451998180|gb|EMD90645.1| hypothetical protein COCHEDRAFT_1140294 [Cochliobolus
heterostrophus C5]
Length = 709
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 232/735 (31%), Positives = 346/735 (47%), Gaps = 123/735 (16%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDT---I 72
F R LL E +AEL T E L SH P L I
Sbjct: 10 FASRQLTLLSAELEAELSETNE-------------------LLTSH--TPSALARAGLAI 48
Query: 73 CNLFVVSTSTGLGGMHLVLFRVE-------GNHRLPPTTLSPGDMVCVRVCDSRGACATS 125
NL + S TGLGG ++ ++ +P + GD+V V+ + GA A
Sbjct: 49 LNLNITSIRTGLGGKTVLELGLDSAVVNKGAAPDIPEHGIRVGDIVAVQ--EQVGASAKK 106
Query: 126 CIQGFVHNLGEDGC-------TISVALESRHGDPTF--SKLFGKSVRIDRIQGLADTLTY 176
+ G +G + V LE D S+L+ I LA+ +TY
Sbjct: 107 GEKREAAKRGSEGVVLRVRRENVEVVLEKEEDDDVNAGSRLW--------IVKLANDVTY 158
Query: 177 ERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV--KLDGIMGKT 234
+R + + LQK G +P + LFG DL D S KL+ I +
Sbjct: 159 KRMNQTMSRLQKLGDQDYSPFMR---VLFGQASPSPL--PTDLNDPSNPLHKLEWI-DPS 212
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+DSQK+AI L R + +I GPPGTGKT L E+I + ++Q R+LV P+N +VDN
Sbjct: 213 LNDSQKEAIRFAL-ASREVALIHGPPGTGKTHTLIELILQLLKQKLRLLVCGPSNISVDN 271
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+VE+L+ + +VR+G+PAR+ P+V S SL + ++ A+ + E RK+ D ++ +
Sbjct: 272 IVERLASHKVPMVRLGHPARLLPSVLSHSLDVLTRTSEAAALVEDVRKEMDEKQASIRKT 331
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
++ I LK+L + +++EK V +++ ++VVLAT GA ++ + FD+V
Sbjct: 332 RNAKERRQIYTELKELRQEFREREKGCVSNLVTGSKVVLATLHGAGGFHLKGQE-FDVVI 390
Query: 414 --------------------GKRCILAGDQCQLAPVILS--------------------- 432
+ +LAGD QL P I S
Sbjct: 391 VDEASQALEAQCWVPLLWTKTNKLVLAGDHLQLPPTIKSLNSKEAKTAKKSKDKKTKGAE 450
Query: 433 ----RKALEGGIGV----SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI 484
R L+ G G+ +L +R LH + LTTQYRM++ I + S E+Y L+
Sbjct: 451 DNADRSMLKQGEGITLETTLFDRLLALHGPSIKRMLTTQYRMHEKIMRFPSDELYDSKLV 510
Query: 485 SSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEH--LDLAGTG----- 536
++ V + LL D + V+ T T PL+ DT+ G E+ + G G
Sbjct: 511 AADFVKARLLKDLKYEVQETEDTTEPLVFWDTQ--GGDFPEKVEDEGVIGKGGKGMSLGD 568
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATID 596
S NE EA +V HV SL+ AGV P IAV +PY AQ+ L L + E G+E+ ++D
Sbjct: 569 SKSNEAEAALVRMHVRSLVGAGVRPEDIAVVTPYNAQLALLAGMLKE--EYPGMELGSVD 626
Query: 597 SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLA 655
FQGRE +AVI S VRSN VGFLG+ RR+NVA+TR +H+ V+ DS TI + FL
Sbjct: 627 GFQGREKEAVIFSTVRSNAEHEVGFLGEKRRLNVAMTRPKRHLCVIGDSETISKGSKFLK 686
Query: 656 RLLRHIRYFGRVKHA 670
++H+ +++A
Sbjct: 687 AWMQHLEDHADLRYA 701
>gi|242780461|ref|XP_002479600.1| DNA helicase, putative [Talaromyces stipitatus ATCC 10500]
gi|218719747|gb|EED19166.1| DNA helicase, putative [Talaromyces stipitatus ATCC 10500]
Length = 713
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 167/470 (35%), Positives = 253/470 (53%), Gaps = 61/470 (12%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T + SQK+AI L K + +I GPPGTGKT L E+I + +++ R+LV P+N +VD
Sbjct: 229 TLNHSQKEAIRFALASKE-IALIHGPPGTGKTHTLIELILQMIRRNMRILVCGPSNVSVD 287
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+VE+L+ + IVRVG+PAR+ +V SL + ++ A+ + RK+ D ++ +
Sbjct: 288 NIVERLAPHRVPIVRVGHPARLLSSVLDHSLEVLTQTSEAAEIVRDVRKEIDEKQASIRK 347
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
++ I LK+L K +++E + V+++++ ++VVLAT GA ++ FD+V
Sbjct: 348 TRNGRERREIYGDLKELRKEFRERESKCVEDLVTGSKVVLATLHGAGGHRLKN-QKFDVV 406
Query: 414 -------------------GKRCILAGDQCQLAPVILSRK-------------------- 434
R +LAGD QL P I S
Sbjct: 407 IIDEASQALEAQCWIPLLTASRAVLAGDHLQLPPTIKSSNIDSSKKTSKTKVKEAEKSSS 466
Query: 435 --ALEG-GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
+L+G +G ++ +R LH + LTTQYRM++ I + S EMY G LI++ +V
Sbjct: 467 LDSLQGVSLGQTMFDRLLALHGPSIKRMLTTQYRMHEKIMQFPSNEMYEGKLIAADSVKD 526
Query: 492 HLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDLAG---TGSFYNEGEAEI 546
LL D P+ V+ T T+ PL+ +DT+ G E E + G + S NE EA +
Sbjct: 527 RLLKDLPYGVEDTDDTKEPLVFIDTQ--GGDFPEKAEDEDATIKGGLLSESKSNEMEARV 584
Query: 547 VVHHVFSLICAGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVATIDSFQGRE 602
+ HV LI AGV P IAV +PY AQV Q LRE+ G+E+ ++D FQGRE
Sbjct: 585 AIRHVEGLIDAGVRPEDIAVITPYNAQVALIAQCLREKY------PGIEIGSVDGFQGRE 638
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+A+++S+VRSN VGFLG+ RR+NVA+TR +H+ V DS TI +
Sbjct: 639 KEAIVVSLVRSNEKHEVGFLGEKRRLNVAMTRPKRHLCVCGDSETISKGS 688
>gi|392864335|gb|EAS34834.2| DNA helicase [Coccidioides immitis RS]
Length = 738
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 196/622 (31%), Positives = 311/622 (50%), Gaps = 102/622 (16%)
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHG---DPTFSKLFGKSVRIDRIQGLADTLTYE 177
A T ++G V +GE ++ R G D + L+G+ + + + LA+ +TY
Sbjct: 148 ADVTKGLEGVVTKIGERSVWVAFDERGRPGKQDDDGAAGLWGQKLWLVK---LANDITYR 204
Query: 178 RNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDD 237
R + ++ ++K + + + + LFG DWS + + +D
Sbjct: 205 RMKQTMVRMEKMAESEHS---SFMRVLFGHTTPSP-------PDWSSASSLDFIDPSLND 254
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQK+AI L R + +I GPPGTGKT L E+I + +++ R+LV P+N +VDN+VE
Sbjct: 255 SQKEAIRFAL-ASREIALIHGPPGTGKTHTLIELILQLLRRNLRILVCGPSNISVDNIVE 313
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA-----EFERKKSDLRK---- 348
+L+ + +VR+G+PAR+ +V SL + ++ A+ + E + K++ +RK
Sbjct: 314 RLAPHKIPLVRIGHPARLLSSVVDHSLEALTQTSDAAAIVKDVRREIDEKQASIRKTRSG 373
Query: 349 -DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL 407
+ R+ KD LK+L K +++E V +++ ++VVLAT GA ++
Sbjct: 374 RERREIYKD----------LKELRKEFREREARCVDHLVTESKVVLATLHGAGGHQLKN- 422
Query: 408 DTFDLV-------------------GKRCILAGDQCQLAPVIL----------SRK---- 434
FD+V + ILAGD QL P I SRK
Sbjct: 423 QKFDVVLIDEASQALEAQCWVPLLSASKAILAGDHLQLPPTIKSTTTNTPSGSSRKLKSS 482
Query: 435 -ALEGG-------------IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYG 480
A++ G + +L +R +LH + LTTQYRM++ I S+ S E+Y
Sbjct: 483 NAIQSGADDLTISSLSITSLETTLFDRLLSLHGPTIKRMLTTQYRMHEKIMSFPSCELYE 542
Query: 481 GSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEE-HLDLAGTGSF 538
LI++ V + LL D P ++ T T PL+ DT+ G E+ L LA + S
Sbjct: 543 SKLIAADHVKARLLKDLPCDIQDTDDTCEPLVFYDTQ--GGEFPERIEDGELLLADSKS- 599
Query: 539 YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVAT 594
N+ EA +V HV +LI AG+ IAV +PY AQV Q LRER G+E+ +
Sbjct: 600 -NDLEAAVVARHVQNLIAAGLREEDIAVITPYNAQVALLAQLLRER------HPGLEIGS 652
Query: 595 IDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-F 653
+D FQGRE +AV++S+VRSN VGFLG+ RR+NVA+TR KH+ V DS TI + F
Sbjct: 653 VDGFQGREKEAVVVSLVRSNAEREVGFLGEKRRLNVAMTRPRKHLCVCGDSETISRGSPF 712
Query: 654 LARLLRHIRYFGRVKHAEPGSF 675
L R + ++ +++ + +
Sbjct: 713 LKRWMDYLEENSDLRYPDAAEY 734
>gi|395545472|ref|XP_003774625.1| PREDICTED: DNA-binding protein SMUBP-2, partial [Sarcophilus
harrisii]
Length = 780
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 163/419 (38%), Positives = 231/419 (55%), Gaps = 53/419 (12%)
Query: 282 VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFE 340
VL AP+N AVDN+VE+L+ ++R+G+PAR+ A+ L ++ +S A VA
Sbjct: 1 VLCCAPSNVAVDNLVERLAAQKQKVLRLGHPARLLDAIQHHCLDAVLARSDQAQIVA--- 57
Query: 341 RKKSDLRKDLRQCLKDDSLAAGIRQL--LKQLGKTLKKKEKETVKEVLSSAQVVLAT--- 395
D+RKD+ D + G++ + L + K+ + E + +++ L Q VL
Sbjct: 58 ----DIRKDI------DRVRGGVKGMKTLDKRDKSYGRNELKLLRKELRGLQNVLGLRDP 107
Query: 396 -NTGAA-DPLIRRL--DTFDLV-------------------GKRCILAGDQCQLAPVILS 432
GA+ D ++ L + FD+V ++C+LAGD QL P I+S
Sbjct: 108 FEPGASPDGPLKLLPDNYFDVVVIDECAQALEASCWIPLLKARKCVLAGDHQQLPPTIVS 167
Query: 433 RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH 492
+A GG+ +SL+ER H + LT QYRM+ AI WAS E+Y G L + S+VA H
Sbjct: 168 HQAASGGLALSLMERLIAKHGDKVVRMLTVQYRMHQAIMQWASDELYHGQLTAHSSVAGH 227
Query: 493 LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHV 551
LL D P V PT T PLLL+DT GC L+ S N GE +V HV
Sbjct: 228 LLKDLPGVVPTEETSIPLLLIDT--------AGCGLFELEDEDEQSRGNPGEVRLVSLHV 279
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
+L+ AGV +AV +PY QV LR++L P+ +E+ ++D FQGRE +AVI+S V
Sbjct: 280 QALVDAGVRVGDMAVITPYNLQVDLLRQQLS--PKYPELEIKSVDGFQGREKEAVILSFV 337
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
RSN G VGFL + RR+NVA+TRA +HVAVVCDS TI + FL RL+ + G V+ A
Sbjct: 338 RSNRKGEVGFLAEDRRINVAVTRARRHVAVVCDSRTIGSDAFLKRLVDYFTLRGEVRTA 396
>gi|367019810|ref|XP_003659190.1| hypothetical protein MYCTH_2295898 [Myceliophthora thermophila ATCC
42464]
gi|347006457|gb|AEO53945.1| hypothetical protein MYCTH_2295898 [Myceliophthora thermophila ATCC
42464]
Length = 742
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 213/688 (30%), Positives = 321/688 (46%), Gaps = 136/688 (19%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF----------------RVEGNHRLPPTTLSPGDMVCVRV 115
+ NL V S TGLGG ++ LP + GD+V V
Sbjct: 48 LINLTVASQRTGLGGRTVLELAPHPATASSAGPGSSSSSSSAADLPEHGIRVGDIVLVAE 107
Query: 116 CDSRGAC--------------ATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKS 161
S G S ++G V +G+ ++V S G GK
Sbjct: 108 QPSSGGVRKKEAKAASSSSSSERSGVKGVVTRVGKGAVGVAVDDGSEDGG-------GKE 160
Query: 162 VRIDRIQG---------LADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKE--- 209
R+D + +AD +T+ R + L K + +R S A V LFG
Sbjct: 161 DRVDALAAGEKKVWIVKVADDVTFRRMNSTMERLAK--MEEREYS-AFVRVLFGLSSPSP 217
Query: 210 ---DVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTG 266
D+T EE +W + T +DSQK AI L K + +I GPPGTGKT
Sbjct: 218 VPADLTKDEEVGEIEW--------IDPTLNDSQKDAIRFALASKE-IGLIHGPPGTGKTH 268
Query: 267 LLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGE 326
L E+I + +++ R+LV P+N +VDN+VE+L+ + +VR+G+PAR+ P+V SL
Sbjct: 269 TLIELILQLLKRNLRILVCGPSNISVDNIVERLAPHKVPMVRLGHPARLLPSVLDHSLDV 328
Query: 327 IVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVL 386
+ ++ A + + R + D ++ + ++ I LK+L K +++E++ V +++
Sbjct: 329 LTRTSEAGAIVKDVRAEMDAKQASIRKTRNGRERRAIYADLKELRKEYRERERKCVTDLV 388
Query: 387 SSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLA 427
+ ++VVLAT GA +R + FD+V K+ I AGD QL
Sbjct: 389 AGSKVVLATLHGAGGFQLRG-EQFDVVIIDEASQALEAQCWVPLLAAKKAICAGDHLQLP 447
Query: 428 PVILS----------------RK-------------------ALEG-GIGVSLLERAATL 451
P I S RK ++G + +L +R L
Sbjct: 448 PTIKSLNSKSKAATTTSSSSSRKGKGDAGPAAAAAAAAGAEGVIQGPTLETTLFDRLLKL 507
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPL 510
H + LTTQYRM++ I + S E+Y G LI++ V + LL D P+ V+ T T+ PL
Sbjct: 508 HGPSIKRMLTTQYRMHEKIMRFPSDELYEGKLIAADAVKARLLKDLPYEVQDTDDTREPL 567
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAG-----TGSFY-----NEGEAEIVVHHVFSLICAGVS 560
+ +DT+ G E+ D G S Y NE EA +V HV SL+ AGV
Sbjct: 568 IFIDTQ--GGDFLEKNEDEQDAGGGKKLTKSSLYGDSKSNEMEAALVRQHVRSLVDAGVK 625
Query: 561 PSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
P IAV +PY AQ+ L + P G+E+ ++D FQGRE +AVI+S+VRSN G VG
Sbjct: 626 PEDIAVVTPYNAQLAILAPLKETFP---GIELGSVDGFQGREKEAVIVSLVRSNPDGEVG 682
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTI 648
FLG+ RR+NVA+TR + + V+ DS T+
Sbjct: 683 FLGEKRRLNVAMTRPKRSLTVIGDSETV 710
>gi|326471889|gb|EGD95898.1| DNA helicase [Trichophyton tonsurans CBS 112818]
Length = 716
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 211/700 (30%), Positives = 329/700 (47%), Gaps = 114/700 (16%)
Query: 63 RAPQELCDTICNLFVVSTSTGLGGMHLVLF----------------RVEGNHRLPPTTLS 106
RA Q + + + + TG+GG + F + E N RL ++
Sbjct: 42 RALQNAGHALTGMVLTNCRTGMGGREVGEFGLDTALSGSGRAKGASKDEDNTRLGVHGIT 101
Query: 107 PGDMVCVRVCDSRGACATS-----------CIQGFVHNLGEDGCTISVALESR----HGD 151
GD+V V S A S I+G V +GE +I A R +
Sbjct: 102 VGDIVRVEEIASGKTAAKSKAGQDDEKSQRGIEGVVTRVGER--SIWAAFGDRGKGKQDE 159
Query: 152 PTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFG----- 206
+L+G+ + + + LA+ +TY R + + L+K L + S + LFG
Sbjct: 160 DGVDELWGRKLWLVK---LANDVTYRRMNQTMAKLEK--LQESEHS-QLIRVLFGHTAPS 213
Query: 207 --DKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGK 264
D E V LE M + +DSQK+AI L R + +I GPPGTGK
Sbjct: 214 PLDFESVGPLE--------------FMDPSLNDSQKEAIRFAL-ASREIALIHGPPGTGK 258
Query: 265 TGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL 324
T L E+I + VQ+ +RVLV P+N +VDN+VE+L+ + +VR+G+PAR+ +V SL
Sbjct: 259 THTLIELIRQLVQRKKRVLVCGPSNISVDNIVERLALHKVPLVRIGHPARLLSSVLDHSL 318
Query: 325 GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE 384
+ ++ A+ + + RK+ D ++ + ++ I LK+L K +++E + V
Sbjct: 319 EVLSQTSEAAAIVKDVRKEIDSKQASIRKTRNGRERRAIYGDLKELRKEFRERESKCVDN 378
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
++S +QVVL T GA ++ FD+V R +LAGD Q
Sbjct: 379 IVSGSQVVLGTLHGAGGHQLKN-QKFDVVLIDEASQAREAQCWIPLLPASRVVLAGDHLQ 437
Query: 426 LAPVILSRKALEG-------------------------GIGVSLLERAATLHEGVLATKL 460
L P I S+ + + ++L +R +LH + L
Sbjct: 438 LPPTIKSKSSSNSDQTNSALWDKEDLRFNELSNTFDMRNLEITLFDRLLSLHGTGIKRML 497
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR--- 516
TTQYRM+ I + S E+Y LIS+ V LL D P+ V+ T T+ PL+ DT+
Sbjct: 498 TTQYRMHQKIMDFPSDELYESKLISADAVRERLLKDLPYEVEDTDDTREPLVFYDTQGGD 557
Query: 517 LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
P S L S N+ EA +V HV +L+ AGV P IAV +PY AQV
Sbjct: 558 FPEKSPDSNGISAKSLL-VESKCNDMEAAVVARHVENLVSAGVRPEDIAVITPYNAQVAL 616
Query: 577 LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
L + L + + +E+ ++D FQGRE +AV++S+VRSN VGFLG+ RR+NVA+TR
Sbjct: 617 LSQLLKE--KFPTLELGSVDGFQGREKEAVVVSLVRSNQDHEVGFLGEKRRLNVAMTRPR 674
Query: 637 KHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
+H+ + DS T+ + FL R + + +++ + F
Sbjct: 675 RHLCICGDSETVSSGSPFLKRWMAFLEENADLRYPDISEF 714
>gi|449302987|gb|EMC98995.1| hypothetical protein BAUCODRAFT_31266 [Baudoinia compniacensis UAMH
10762]
Length = 707
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 211/688 (30%), Positives = 329/688 (47%), Gaps = 124/688 (18%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE---GNHRLPPTTLSPGDMVCV-------RVCDSRGA 121
+ NL + S TG GG L+ ++ G LP L GD+ V R +
Sbjct: 48 LLNLTLSSQRTGFGGKSLLELSLDPAVGVGDLPEHGLRVGDICAVAEQPKGAERKKERAS 107
Query: 122 CATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCE 181
++G V + + T VAL+ + KL+ + LA+ +TY+R +
Sbjct: 108 IEKRAVEGVVTKVQKQAVT--VALDKEEVEVPNGKLW--------LIKLANDVTYKRLSQ 157
Query: 182 ALMLLQKNGLHKRNPSIAAVVT--LFGDKEDVTWLEENDLA---DWSEVKLDGIMGKTFD 236
+ + L K PS +++T LFG K T L + ++ +W + KT +
Sbjct: 158 TM-----SKLEKMQPSEHSILTQVLFG-KSSPTSLSDAEIQKDLEWHD--------KTMN 203
Query: 237 DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMV 296
DSQK+A+ L R + +I GPPGTGKT L E+I + + +G+R LV P+N +VDN+V
Sbjct: 204 DSQKEAVRFAL-ASRDVALIHGPPGTGKTHTLIELILQFLDRGQRALVCGPSNISVDNIV 262
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVK-SKLASFV----AEFERKKSDLRKDLR 351
E+L+ +++VR+G+PAR+ P+V SL + K S AS V AE + K+S +RK
Sbjct: 263 ERLTSHKVSMVRLGHPARLLPSVLDHSLDVLSKTSDAASIVTDIRAEMDVKQSSIRK--- 319
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
++ I LK+L K +++E V ++L ++VVL+T GA +R + FD
Sbjct: 320 --TRNGRERRAIYGELKELRKEYRQREGRVVSDLLKQSRVVLSTLHGAGGFHLRD-EKFD 376
Query: 412 LV---------------------GKRCILAGDQCQLAPVI-------------------- 430
+V + +LAGD QL P I
Sbjct: 377 VVIIDEASQALEAQCWIPVLATGTSKLVLAGDHLQLPPTIKSLNSQASTPIKVADGSNGT 436
Query: 431 ---LSRKAL---------------EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
+SR ++ + + +L +R LH + LT QYRM++ I +
Sbjct: 437 NNDMSRSSVDDDSATVGQKKIKDDDATLETTLFDRLLKLHGSSIKRMLTIQYRMHEKIMA 496
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
+ S +Y LI++ +V LL D P+ V T T+ PL+ DT+ G EE D
Sbjct: 497 FPSVALYEKKLIAADSVKDRLLKDLPYGVHDTDDTREPLVFWDTQ--GGDYPEKTEED-D 553
Query: 532 LAGTG-------SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
+ G S NE EA +V HV L+ G P IAV +PY Q+ L L D
Sbjct: 554 IGVKGRSGLLAESKVNENEAAVVRLHVQRLVEGGTKPEDIAVVTPYNGQLALLSGLLKD- 612
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
G+E+ ++D FQGRE +AVI+S+VRSN+ VGFL + RR+NVA+TR +H+ VV D
Sbjct: 613 -RFPGLELGSVDGFQGREKEAVIVSLVRSNSDREVGFLSEKRRLNVAMTRPKRHLCVVGD 671
Query: 645 SSTICHNT-FLARLLRHIRYFGRVKHAE 671
S T+ + FL ++H+ +++ +
Sbjct: 672 SETVGKGSKFLRSWMQHLEEHADLRYPD 699
>gi|326477246|gb|EGE01256.1| DNA-binding protein SMUBP-2 [Trichophyton equinum CBS 127.97]
Length = 716
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 212/701 (30%), Positives = 331/701 (47%), Gaps = 116/701 (16%)
Query: 63 RAPQELCDTICNLFVVSTSTGLGGMHLVLF----------------RVEGNHRLPPTTLS 106
RA Q + + + + TG+GG + F + E N RL ++
Sbjct: 42 RALQNAGHALTGMVLTNCRTGMGGREVGEFGLDTALSGSGRAKGASKDEDNTRLGVHGIT 101
Query: 107 PGDMVCVRVCDSRGACATS-----------CIQGFVHNLGEDGCTISVALESR----HGD 151
GD+V V S A S I+G V +GE +I A R +
Sbjct: 102 VGDIVRVEEIASGKTAAKSKAGQDDEKSQRGIEGVVTRVGER--SIWAAFGDRGKGKQDE 159
Query: 152 PTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFG----- 206
+L+G+ + + + LA+ +TY R + + L+K L + S + LFG
Sbjct: 160 DGVDELWGRKLWLVK---LANDVTYRRMNQTMAKLEK--LQESEHS-QLIRVLFGHTAPS 213
Query: 207 --DKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGK 264
D E V LE M + +DSQK+AI L R + +I GPPGTGK
Sbjct: 214 PLDFESVGPLE--------------FMDPSLNDSQKEAIRFAL-ASREIALIHGPPGTGK 258
Query: 265 TGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL 324
T L E+I + VQ+ +RVLV P+N +VDN+VE+L+ + +VR+G+PAR+ +V SL
Sbjct: 259 THTLIELIRQLVQRKKRVLVCGPSNISVDNIVERLALHKVPLVRIGHPARLLSSVLDHSL 318
Query: 325 GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE 384
+ ++ A+ + + RK+ D ++ + ++ I LK+L K +++E + V
Sbjct: 319 EVLSQTSEAAAIVKDVRKEIDSKQASIRKTRNGRERRAIYGDLKELRKEFRERESKCVDN 378
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
++S +QVVL T GA ++ FD+V R +LAGD Q
Sbjct: 379 IVSGSQVVLGTLHGAGGHQLKN-QKFDVVLIDEASQAREAQCWIPLLPASRVVLAGDHLQ 437
Query: 426 LAPVILSRKALEG-------------------------GIGVSLLERAATLHEGVLATKL 460
L P I S+ + + ++L +R +LH + L
Sbjct: 438 LPPTIKSKSSSNSDQTNSALWDKEDLRFNELSNTFDMRNLEITLFDRLLSLHGTGIKRML 497
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR--- 516
TTQYRM+ I + S E+Y LI++ V LL D P+ V+ T T+ PL+ DT+
Sbjct: 498 TTQYRMHQKIMDFPSDELYESKLIAADAVRERLLKDLPYEVEDTDDTREPLVFYDTQGGD 557
Query: 517 LPYGSL-SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
P S S G L S N+ EA +V HV +L+ AGV P IAV +PY AQV
Sbjct: 558 FPEKSPDSNGISAKSPL--VESKCNDMEAAVVARHVENLVSAGVRPEDIAVITPYNAQVA 615
Query: 576 HLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
L + L + + +E+ ++D FQGRE +AV++S+VRSN VGFLG+ RR+NVA+TR
Sbjct: 616 LLSQLLKE--KFPTLELGSVDGFQGREKEAVVVSLVRSNQDHEVGFLGEKRRLNVAMTRP 673
Query: 636 CKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
+H+ + DS T+ + FL R + + +++ + F
Sbjct: 674 RRHLCICGDSETVSSGSPFLKRWMAFLEENADLRYPDISEF 714
>gi|425781089|gb|EKV19071.1| DNA helicase, putative [Penicillium digitatum PHI26]
gi|425783223|gb|EKV21082.1| DNA helicase, putative [Penicillium digitatum Pd1]
Length = 690
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 247/463 (53%), Gaps = 52/463 (11%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +DSQK AI L R + +I GPPGTGKT L E+I + V++ +RVLV P+N +VD
Sbjct: 234 TLNDSQKDAIRFAL-AARDIALIHGPPGTGKTHTLIELILQLVRRKKRVLVCGPSNVSVD 292
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+VE+L+ + +VR+G+PAR+ P+V SL + ++ A + + RK+ D ++ +
Sbjct: 293 NIVERLAPKKVPVVRIGHPARLLPSVLEHSLEVLTQTSDAGGIVKDIRKEIDEKQASIRK 352
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
+ GI LK L K +++E + V ++ + VVLAT GA ++ FD+V
Sbjct: 353 TRSGRERRGIYDDLKLLRKEFRQRESKCVDNLVRESSVVLATLHGAGGHQLKN-QKFDVV 411
Query: 414 -------------------GKRCILAGDQCQLAPVILS--RKALEGGI------------ 440
++ +LAGD QL P + S +K E
Sbjct: 412 IIDEASQALEAQCWISLLGAEKVVLAGDHLQLPPTVKSTGQKPKENNSKGTEDKTDTNTD 471
Query: 441 -----GVS----LLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
GVS L +R LH + LTTQYRM++ I + S E+Y G LI+S V
Sbjct: 472 MEILKGVSLERTLFDRLLALHGPGIKRMLTTQYRMHEKIMRFPSDELYEGKLIASDAVKD 531
Query: 492 HLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT---GSFYNEGEAEIV 547
LL+D P+ V+ T TQ PL+ DT+ G E+ + G S NE EA +V
Sbjct: 532 RLLIDLPYDVEGTDDTQEPLVFWDTQ--GGDFPEKAEDEISKKGVLLGDSKSNEMEAMVV 589
Query: 548 VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVI 607
HV +LI AGV P ++AV +PY Q+ L L + + G+E+ ++D FQGRE +AV+
Sbjct: 590 ARHVDNLINAGVRPESVAVITPYNGQLALLSRILRE--KYPGLELGSVDGFQGREKEAVV 647
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
+S+VRSN VGFLG+ RR+NVA+TR +H+ + DS TI
Sbjct: 648 VSLVRSNAEREVGFLGEKRRLNVAMTRPKRHLCICGDSETISQ 690
>gi|400602498|gb|EJP70100.1| DNA helicase [Beauveria bassiana ARSEF 2860]
Length = 691
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 205/668 (30%), Positives = 316/668 (47%), Gaps = 86/668 (12%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFR----VEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
I NL V S TGLGG ++ LP L GD+V V D A
Sbjct: 50 ITNLVVASQRTGLGGRTVLELSPDSATSSTGELPEHGLRTGDIVLV--ADQPAGSAKKKE 107
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKL--------FGKSVRIDRIQGLADTLTYERN 179
+ G G V S F+ L FG V + + LAD +TY R
Sbjct: 108 IQELEKKGARGVVTKVQKTS-----VFAALDEGKDEVAFGGKVWMVK---LADEVTYRRM 159
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGDK---EDVTWLEENDLADWSEVKLDGIMGKTFD 236
+ LQK + + I + L +D++ EE +W T +
Sbjct: 160 NLVMEKLQKMSEAEYSGFIRVLFGLSSPSPVPKDLSADEELSKIEW--------FDPTLN 211
Query: 237 DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMV 296
DSQK AI L R + +I GPPGTGKT L E+I + ++ +RVLV P+N +VDN+V
Sbjct: 212 DSQKDAIRFAL-ASREIALIHGPPGTGKTHTLIELILQLIKLNKRVLVCGPSNISVDNIV 270
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKD 356
E+LS + I+R+G+PAR+ P+V + SL + ++ A + + R + D ++ + K
Sbjct: 271 ERLSPHKVPILRLGHPARLLPSVVNHSLDALTQTSEAGAIVKDVRAEMDAKQASIKKTKS 330
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--- 413
I L++L K +++E++ V ++ ++VVLAT GA + R + FD+V
Sbjct: 331 GKERRQIYGDLRELRKEYRERERKCVSHLVGGSKVVLATLHGAGGHQL-RAEKFDVVIID 389
Query: 414 ----------------GKRCILAGDQCQLAPVILSR--------------KALEGG-IGV 442
+ + AGD QL P I S K ++G +
Sbjct: 390 EASQALEAQCWVPLLSANKAVCAGDHLQLPPTIKSSNSAVSLKLKDGTEAKPIKGQTLET 449
Query: 443 SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VK 501
+L +R LH + LTTQYRM++ I + S E+Y L+++ V + LL + + V+
Sbjct: 450 TLFDRLLALHGPSIKRMLTTQYRMHEKIMRFPSDELYESKLVAAGAVNARLLKELAYEVE 509
Query: 502 PTWITQCPLLLLDTRLPYGSLSLGCEE---------HLDLAGTGSFYNEGEAEIVVHHVF 552
T PL+ +DT+ G EE + L G S NE EA +V HV
Sbjct: 510 DNEDTNEPLIFIDTQ--GGDFPERSEEDDADNPKKGKVSLHGD-SKSNEMEAALVQQHVS 566
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVR 612
L+ AG+ IAV +PY AQ+ L + P G+E+ ++D FQGRE +A+I+S+VR
Sbjct: 567 RLVEAGLRAEDIAVVTPYNAQLAVLAPLKEKFP---GIELGSVDGFQGREKEAIIVSLVR 623
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH-NTFLARLLRHIRYFGRVKHAE 671
SN+ G VGFLG+ RR+NVA+TR + + V+ DS T+ ++FL R + + +++ +
Sbjct: 624 SNSKGEVGFLGEKRRLNVAMTRPKRSLTVIGDSETVKRGSSFLKRWMNFLEDNADLRYPD 683
Query: 672 PGSFGGSG 679
S G
Sbjct: 684 MSSLNMGG 691
>gi|340905007|gb|EGS17375.1| DNA polymerase alpha-associated DNA helicase-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 890
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 204/645 (31%), Positives = 315/645 (48%), Gaps = 86/645 (13%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE-----GNHRLPPTTLSPGDMVCVRVCDSRGACATS- 125
+ NL ++S TGLGG ++ + LP + GD+V V ++ T+
Sbjct: 234 LTNLTILSQRTGLGGKTVLELGPDPAFTISTSELPEHAIRVGDIVLVSELHAQSGIKTTK 293
Query: 126 ---------------------CIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRI 164
++G V +G+ T+ VA+E + ++ I
Sbjct: 294 RGKTKGLAGGDGGSGGGEKQTGVKGVVTKVGK--GTVCVAVEEEDAERGEERIPEGRCWI 351
Query: 165 DRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSE 224
++ AD +TY R + + L K + P I LFG E DL+ E
Sbjct: 352 VKV---ADDVTYRRMSQTMDKLAKMSEAEYTPFIRV---LFGLSSPSPVPE--DLSKDPE 403
Query: 225 VKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLV 284
V KT +DSQK AI L K + +I GPPGTGKT L E+I + + + R+LV
Sbjct: 404 VGNIEWFDKTLNDSQKDAIRFALASKE-IALIHGPPGTGKTHTLIELILQLLSRNLRILV 462
Query: 285 TAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKS 344
P+N +VDN+VE+L+ + ++R+G+PAR+ P++ SL + ++ AS + + R +
Sbjct: 463 CGPSNISVDNIVERLAPHQIPLIRLGHPARLLPSILPYSLDILTRTSDASAIVQDIRSEM 522
Query: 345 D-LRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPL 403
D L+ +R+ A I LK L K +++E+ V E++ ++VVLAT GA
Sbjct: 523 DTLQSSIRKTRSGRERRA-IYAQLKDLRKEYRERERRCVDELIKGSKVVLATLHGAGGFQ 581
Query: 404 IRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGG----- 439
+R+ + FD+V K+ + AGD QL P I S + +G
Sbjct: 582 LRQ-EQFDVVIIDEASQALEAQCWVALLAAKKAVCAGDHLQLPPTIKSLNSSKGASAKKG 640
Query: 440 ---IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ +L +R LH + LTTQYRM++ I + S E+Y G L+++ V LL D
Sbjct: 641 GPSLETTLFDRLLALHGSGIKRMLTTQYRMHEKIMRFPSDELYDGKLVAAPRVGDRLLKD 700
Query: 497 TPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD------------LAGTGSFYNEGE 543
P+ V+ T T PL+ +DT+ G E+ D + + S NE E
Sbjct: 701 LPYGVEETDETTEPLIFIDTQ--GGDFPEKNEDDSDQQDGSKKKLTKGMIYSESKSNEME 758
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
A +V HV L+ AGV IAV +PY AQ+ L D+ P G+E+ ++D FQGRE
Sbjct: 759 AALVRQHVRKLVEAGVKAEDIAVVTPYNAQLAILAPLKDEFP---GIELGSVDGFQGREK 815
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+AVI+S+VRSN G VGFLG+ RR+NVA+TR + + V+ DS T+
Sbjct: 816 EAVIVSLVRSNPDGEVGFLGEKRRLNVAMTRPKRSLTVIGDSETV 860
>gi|124009432|ref|ZP_01694109.1| dna-binding protein smubp-2 [Microscilla marina ATCC 23134]
gi|123984980|gb|EAY24938.1| dna-binding protein smubp-2 [Microscilla marina ATCC 23134]
Length = 649
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 196/636 (30%), Positives = 312/636 (49%), Gaps = 79/636 (12%)
Query: 77 VVSTSTGLGGMHLVLFR----VEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
V ST G G + + F + NH + GDMV + +S S I G +
Sbjct: 46 VKSTEIGTGENYYISFERVTELRQNH-----SFQVGDMVSL-FNNSSKQGKKSSISGVIT 99
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
+ D ++ +++ P + + +G ++ ID L D +TY+ A+ + +
Sbjct: 100 YVKRDAMRVAFSVDEL---PEWVE-YG-TLGIDL---LFDAVTYKEMDAAV----RKVVS 147
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
+P + + + K+ +L++++L D+ EV T ++SQ +A+ + + +
Sbjct: 148 SEDPRVIELRDVLIGKKKARFLDKSELPDYYEVA-------TLNESQNEAVQ-NILRAQD 199
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ II GPPGTGKT + + +QQ ++VLVTAP+N AVD + ++L G++++RVGNP
Sbjct: 200 VAIIHGPPGTGKTTTMVAAVKLTLQQEKQVLVTAPSNTAVDLLTKRLLAKGVSVIRVGNP 259
Query: 313 ARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD--SLAAGIRQLLKQL 370
AR++ + SL + + + R+ +D K + K + R+L+
Sbjct: 260 ARVNEDLIPFSLESQIAQHPDYKLLKKIRRDADEYKKMAAKYKRNFGKEEREQRKLMFAE 319
Query: 371 GKTLKKK----EKETVKEVLSSAQVVLATNTGAADPLIR--RLDT--FDLVGK------- 415
LK + EK V +L++ QVV AT G+ + IR R T D G+
Sbjct: 320 ASKLKHEAYALEKYIVDSLLNNTQVVTATLVGSVNKFIRYRRFSTVFIDEAGQALEPACW 379
Query: 416 -------RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
R + AGD CQL P I S A +GG+ +L E+ + + + L TQYRM++
Sbjct: 380 IPLLKSERVVFAGDHCQLPPTIKSFDAAKGGLTETLFEQ--VIKKQAVDVMLKTQYRMHE 437
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE- 527
I +++KE Y G L+++ TV +H L ++ I Q P+ +DT GC
Sbjct: 438 HIMQFSNKEFYQGELLAADTVVNHRLFAHADLQGEMINQ-PVEFIDT--------AGCGF 488
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAG--VSPSAI-------AVQSPYVAQVQHLR 578
E +A TGS YN EA I++ H L P + + SPY AQV+HL+
Sbjct: 489 EEKTMAETGSKYNPDEAGILLKHWIQLATQLQLAEPDMLKEGWFSAGIISPYQAQVKHLK 548
Query: 579 ERLDDLPE----AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
E + P+ A ++ +ID FQG+E D V ISMVRSN G +GFL D+RRMNVA+TR
Sbjct: 549 ELFAEHPDLTEVAPWTDINSIDGFQGQERDVVYISMVRSNDKGKIGFLEDTRRMNVALTR 608
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
A K + V+ DS T+ N F L +I G + A
Sbjct: 609 ARKKLVVIGDSGTLGQNAFYQHFLDYIDSIGAYRSA 644
>gi|303313437|ref|XP_003066730.1| hypothetical protein CPC735_059550 [Coccidioides posadasii C735
delta SOWgp]
gi|240106392|gb|EER24585.1| hypothetical protein CPC735_059550 [Coccidioides posadasii C735
delta SOWgp]
Length = 738
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 195/619 (31%), Positives = 309/619 (49%), Gaps = 102/619 (16%)
Query: 124 TSCIQGFVHNLGEDGCTISVALESRHG---DPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
T ++G V +GE ++ R G D + L+G+ + + + LA+ +TY R
Sbjct: 151 TKGLEGVVTKIGERSVWVAFDERGRPGKQDDEGAAGLWGQKLWLVK---LANDITYRRMK 207
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQK 240
+ ++ ++K + + + + LFG DWS + + +DSQK
Sbjct: 208 QTMVRMEKMAESEHS---SFMRVLFGHTTPSP-------PDWSSASSLDFIDPSLNDSQK 257
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300
+AI L R + +I GPPGTGKT L E+I + +++ R+LV P+N +VDN+VE+L+
Sbjct: 258 EAIRFAL-ASREIALIHGPPGTGKTHTLIELILQLLRRNLRILVCGPSNISVDNIVERLA 316
Query: 301 DVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA-----EFERKKSDLRK-----DL 350
+ +VR+G+PAR+ +V SL + ++ A+ + E + K++ +RK +
Sbjct: 317 PHKIPLVRIGHPARLLSSVVDHSLEALTQTSDAAAIVKDVRREIDEKQASIRKTRSGRER 376
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
R+ KD LK+L K +++E V +++ ++VVLAT GA ++ F
Sbjct: 377 REIYKD----------LKELRKEFREREARCVDHLVTESKVVLATLHGAGGHQLKN-QKF 425
Query: 411 DLV-------------------GKRCILAGDQCQLAPVIL----------SRK-----AL 436
D+V + ILAGD QL P I SRK A+
Sbjct: 426 DVVLIDEASQALEAQCWVPLLSASKAILAGDHLQLPPTIKSTTTNTPSGSSRKLKSSNAI 485
Query: 437 EGG-------------IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL 483
+ G + +L +R +LH + LTTQYRM++ I S+ S E+Y L
Sbjct: 486 QSGADDLTISSLPITSLETTLFDRLLSLHGPTIKRMLTTQYRMHEKIMSFPSCELYESKL 545
Query: 484 ISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEE-HLDLAGTGSFYNE 541
I++ V + LL D P ++ T T PL+ DT+ G E+ L LA + S N
Sbjct: 546 IAADHVKARLLKDLPCDIQDTDDTCEPLVFYDTQ--GGEFPERIEDGELLLADSKS--NG 601
Query: 542 GEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVATIDS 597
EA IV HV +LI AG+ IAV +PY AQV Q LRER G+E+ ++D
Sbjct: 602 LEAAIVARHVQNLIAAGLREEDIAVITPYNAQVALLAQLLRER------HPGLEIGSVDG 655
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLAR 656
FQGRE +AV++S+VRSN VGFLG+ RR+NVA+TR +H+ V DS TI + FL R
Sbjct: 656 FQGREKEAVVVSLVRSNAEREVGFLGEKRRLNVAMTRPRRHLCVCGDSETISRGSPFLKR 715
Query: 657 LLRHIRYFGRVKHAEPGSF 675
+ ++ +++ + +
Sbjct: 716 WMDYLEENSDLRYPDAAEY 734
>gi|451845629|gb|EMD58941.1| hypothetical protein COCSADRAFT_261831 [Cochliobolus sativus
ND90Pr]
Length = 708
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 222/705 (31%), Positives = 339/705 (48%), Gaps = 104/705 (14%)
Query: 52 SKPIEFLVSHGRAPQELCDT---ICNLFVVSTSTGLGGMHLVLFRVE-------GNHRLP 101
S+ E L SH P L I NL + S TGLGG ++ ++ +P
Sbjct: 27 SETNELLTSH--TPSALARAGLAILNLNITSIRTGLGGKTVLELGLDSAVVNKGAAPDIP 84
Query: 102 PTTLSPGDMVCVRVCDSRGACATSC---------IQGFVHNLGEDGCTISVALESRHGDP 152
+ GD+V V+ + GA A ++G V + + + + E G
Sbjct: 85 EHGIRVGDIVAVQ--EQVGASAKKGEKKEAARRGVEGVVLRVRRENVEVVLDREEDDGVN 142
Query: 153 TFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVT 212
+L+ I LA+ +TY+R + + LQK G +P + LFG
Sbjct: 143 GGGRLW--------IVKLANDVTYKRMNQTMSRLQKLGDQDYSPFMR---VLFGQASPSP 191
Query: 213 WLEENDLADWSEV--KLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKE 270
DL D S KL+ I + +DSQK+AI L R + +I GPPGTGKT L E
Sbjct: 192 L--PKDLNDPSNPLHKLEWI-DPSLNDSQKEAIRFAL-ASREVALIHGPPGTGKTHTLIE 247
Query: 271 IIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKS 330
+I + ++Q R+LV P+N +VDN+VE+L+ + +VR+G+PAR+ P+V S SL + ++
Sbjct: 248 LILQLLKQKLRLLVCGPSNISVDNIVERLASHKVPMVRLGHPARLLPSVLSHSLDVLTRT 307
Query: 331 KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQ 390
A+ + E RK+ D ++ + ++ I LK+L + +++EK V +++ ++
Sbjct: 308 SEAAALVEDVRKEMDEKQASIRKTRNAKERRQIYTELKELRQEFREREKGCVNNLVTGSK 367
Query: 391 VVLATNTGAADPLIRRLDTFDLV---------------------GKRCILAGDQCQLAPV 429
VVLAT GA ++ + FD+V + +LAGD QL P
Sbjct: 368 VVLATLHGAGGFHLKGQE-FDVVIVDEASQALEAQCWVPLLWTKANKLVLAGDHLQLPPT 426
Query: 430 ILS-------------------------RKALEGGIGV----SLLERAATLHEGVLATKL 460
I S R L+ G V +L +R LH + L
Sbjct: 427 IKSLNSKEAKTAKKSKDKKTKDAEDNADRSMLKQGEDVTLETTLFDRLLALHGPSIKRML 486
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPY 519
TTQYRM++ I + S E+Y L+++ V + LL D + V+ T T PL+ DT+
Sbjct: 487 TTQYRMHEKIMRFPSDELYDSKLVAADFVKARLLKDLKYEVQETEDTTEPLVFWDTQ--G 544
Query: 520 GSLSLGCEEH--LDLAGTG-----SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
G E+ + G G S NE EA +V HV SL+ AGV P IAV +PY A
Sbjct: 545 GDFPEKVEDEGVIGKGGKGMILGDSKSNEAEAALVRMHVRSLVAAGVKPEDIAVVTPYNA 604
Query: 573 QVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
Q+ L L + E G+E+ ++D FQGRE +AVI+S VRSN VGFLG+ RR+NVA+
Sbjct: 605 QLALLAGMLKE--EYPGMELGSVDGFQGREKEAVIVSTVRSNAEHEVGFLGEKRRLNVAM 662
Query: 633 TRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSFG 676
TR +H+ V+ DS TI + FL ++H+ + + G+ G
Sbjct: 663 TRPKRHLCVIGDSETISKGSKFLKAWMQHLEDHADLSNITNGTMG 707
>gi|320036315|gb|EFW18254.1| DNA helicase [Coccidioides posadasii str. Silveira]
Length = 738
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 195/619 (31%), Positives = 309/619 (49%), Gaps = 102/619 (16%)
Query: 124 TSCIQGFVHNLGEDGCTISVALESRHG---DPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
T ++G V +GE ++ R G D + L+G+ + + + LA+ +TY R
Sbjct: 151 TKGLEGVVTKIGERSVWVAFDERGRPGKQDDEGAAGLWGQKLWLVK---LANDITYRRMK 207
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQK 240
+ ++ ++K + + + + LFG DWS + + +DSQK
Sbjct: 208 QTMVRMEKMAESEHS---SFMRVLFGHTTPSP-------PDWSSASSLDFIDPSLNDSQK 257
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300
+AI L R + +I GPPGTGKT L E+I + +++ R+LV P+N +VDN+VE+L+
Sbjct: 258 EAIRFAL-ASREIALIHGPPGTGKTHTLIELILQLLRRNLRILVCGPSNISVDNIVERLA 316
Query: 301 DVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA-----EFERKKSDLRK-----DL 350
+ +VR+G+PAR+ +V SL + ++ A+ + E + K++ +RK +
Sbjct: 317 PHKIPLVRIGHPARLLSSVVDHSLEALTQTSDAAAIVKDVRREIDEKQASIRKTRSGRER 376
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
R+ KD LK+L K +++E V +++ ++VVLAT GA ++ F
Sbjct: 377 REIYKD----------LKELRKEFREREARCVDHLVTESKVVLATLHGAGGHQLKS-QKF 425
Query: 411 DLV-------------------GKRCILAGDQCQLAPVIL----------SRK-----AL 436
D+V + ILAGD QL P I SRK A+
Sbjct: 426 DVVLIDEASQALEAQCWVPLLSASKAILAGDHLQLPPTIKSTTTNTPSGSSRKLKSSNAI 485
Query: 437 EGG-------------IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL 483
+ G + +L +R +LH + LTTQYRM++ I S+ S E+Y L
Sbjct: 486 QSGADDLTISSLPITSLETTLFDRLLSLHGPTIKRMLTTQYRMHEKIMSFPSCELYESKL 545
Query: 484 ISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEE-HLDLAGTGSFYNE 541
I++ V + LL D P ++ T T PL+ DT+ G E+ L LA + S N
Sbjct: 546 IAADHVKARLLKDLPCDIQDTDDTCEPLVFYDTQ--GGEFPERIEDGELLLADSKS--NG 601
Query: 542 GEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVATIDS 597
EA IV HV +LI AG+ IAV +PY AQV Q LRER G+E+ ++D
Sbjct: 602 LEAAIVARHVQNLIAAGLREEDIAVITPYNAQVALLAQLLRER------HPGLEIGSVDG 655
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLAR 656
FQGRE +AV++S+VRSN VGFLG+ RR+NVA+TR +H+ V DS TI + FL R
Sbjct: 656 FQGREKEAVVVSLVRSNAEREVGFLGEKRRLNVAMTRPRRHLCVCGDSETISRGSPFLKR 715
Query: 657 LLRHIRYFGRVKHAEPGSF 675
+ ++ +++ + +
Sbjct: 716 WMDYLEENSDLRYPDAAEY 734
>gi|310790786|gb|EFQ26319.1| hypothetical protein GLRG_01463 [Glomerella graminicola M1.001]
Length = 690
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 220/675 (32%), Positives = 328/675 (48%), Gaps = 112/675 (16%)
Query: 58 LVSHGRAPQELCDT---ICNLFVVSTSTGLGGMHLVLFRVEG--NHRLPPTTLSPGDMVC 112
LVSH AP L + NL V + TGLGG ++ + + LP L PGD+V
Sbjct: 34 LVSH-HAPAALHRAGLALPNLIVGARRTGLGGRTVLELGADTAVSSELPEHGLRPGDIVL 92
Query: 113 V-------------RVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFG 159
V + +S+GA +G V + + TI VA++ G+ + F
Sbjct: 93 VSEQPAGNAKKKEVKELESKGA------RGVVTRVRRE--TIGVAVDDGKGE---EREFA 141
Query: 160 KSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDL 219
V I ++ AD +T+ R + + L+K + A + LFG DL
Sbjct: 142 GRVWIVKV---ADDVTFRRMNQTMEKLEK---MTESEYTAFMRVLFGLSSPSPV--PQDL 193
Query: 220 ADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
A SE+ + + +DSQK AI L R + +I GPPGTGKT L E+I + ++
Sbjct: 194 AADSELSKIQWIDPSLNDSQKDAIRFAL-ASREVALIHGPPGTGKTHTLIELILQLIKLD 252
Query: 280 ERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV--- 336
R+LV P+N +VDN+VE+L+ + I+R+G+PAR+ P+V + SL + ++ A +
Sbjct: 253 LRILVCGPSNISVDNIVERLAPHKIPILRLGHPARLLPSVLAHSLDVLTQTSEAGAIVKD 312
Query: 337 --AEFERKKSDLRK-----DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSA 389
AE + K++ ++K + RQ D LK+L K +++E+ V ++ +
Sbjct: 313 VRAEMDAKQASIKKTRNGREKRQIYAD----------LKELRKEFRERERRCVSNLIRES 362
Query: 390 QVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVI 430
+VVLAT GA +R FD+V K+ + AGD QL P I
Sbjct: 363 KVVLATLHGAGGHQLRD-QRFDIVIIDEASQALEAQCWVPLLSAKKAVCAGDHLQLPPTI 421
Query: 431 LSRKALEGGIGVS----------------LLERAATLHEGVLATKLTTQYRMNDAIASWA 474
S VS L +R LH + LTTQYRM++ I +
Sbjct: 422 KSLNYRVKAAAVSEDGAEKQIKSMTLETTLFDRLLALHGPSIKRMLTTQYRMHEKIMRFP 481
Query: 475 SKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEE----- 528
S E+Y G LI++ V LL D P+ V+ T T PL+ +DT+ G E+
Sbjct: 482 SDELYEGRLIAAEAVRGRLLKDLPYEVRDTEDTNEPLVFIDTQ--GGDYPEKNEDDDKDA 539
Query: 529 ----HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
L G S NE EA +V H L+ AGV P IAV +PY AQ+ L + L
Sbjct: 540 IKKAKFSLHGE-SKSNEMEAALVRQHAQKLVDAGVKPEDIAVVTPYNAQLAVLAPLKEQL 598
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
P G+E+ ++D FQGRE +AVI+S+VRSN+ G VGFLG+ RR+NVA+TR + + V+ D
Sbjct: 599 P---GIELGSVDGFQGREKEAVIVSLVRSNSHGEVGFLGEQRRLNVAMTRPKRSLTVIGD 655
Query: 645 SSTICHNT-FLARLL 658
S T+ + FL R +
Sbjct: 656 SETVKRGSNFLKRWM 670
>gi|258573219|ref|XP_002540791.1| DNA helicase [Uncinocarpus reesii 1704]
gi|237901057|gb|EEP75458.1| DNA helicase [Uncinocarpus reesii 1704]
Length = 725
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 221/758 (29%), Positives = 348/758 (45%), Gaps = 143/758 (18%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLV-SHGRAPQELCDTICN 74
F Q +LL E DAE+ + L++ T + + F+ + RA Q +
Sbjct: 9 FAQSQQQLLLAEHDAEIASSALSLSSGGT-------NAGLSFVSPATRRALQAAGHALTG 61
Query: 75 LFVVSTSTGLGGMHLVLFRVE--------------------GNHRLPPTTLSPGDMVCVR 114
L +V+ TG+GG + F V+ G LP + GD+V V
Sbjct: 62 LVLVNCRTGMGGREVGEFGVDSALKSAKGKKVGDMGDNGDAGRDSLPAHGIRVGDVVRVE 121
Query: 115 --VCDSRGACA---------------TSCIQGFVHNLGEDGCTISVALESRHG---DPTF 154
+RG T ++G V +GE I+ R G D
Sbjct: 122 PIASGARGGVGSKAGKAKVGKDDDKTTKGLEGVVTRVGERSVWIAFDDRGRPGKQDDEGA 181
Query: 155 SKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWL 214
L+G+ + + + LA+ +T+ R M H R + LFG +
Sbjct: 182 DSLWGQKLWLVK---LANDITHRR-----MEKMTESDHTRFMQV-----LFGHTTPSS-- 226
Query: 215 EENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR 274
DW+ + + +DSQK AI L + +I GPPGTGKT L E+I +
Sbjct: 227 -----PDWASGSSIDFIDPSLNDSQKAAIRFALASHE-IALIHGPPGTGKTHTLIELILQ 280
Query: 275 AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLAS 334
V++ R+LV P+N +VDN+VE+L+ + +VR+G+PAR+ +V SL + ++ ++
Sbjct: 281 LVRRNLRILVCGPSNISVDNIVERLAPHKIPLVRIGHPARLLSSVLDHSLEVLTQTSDSA 340
Query: 335 FVA-----EFERKKSDLRK-----DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE 384
+ E E+K++ +RK + R+ KD LK+L K +++E V
Sbjct: 341 AIVKDVRREIEQKQASIRKTRSGRERREIYKD----------LKELRKEFREREARCVDS 390
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
+++ ++VVLAT G+ +R FD+V + ILAGD Q
Sbjct: 391 LVTGSKVVLATLHGSGGHQLRN-QKFDVVLIDEASQALEAQCWVPLLSASKAILAGDHLQ 449
Query: 426 LAPVI--------------------------LSRKALEGGIGVSLLERAATLHEGVLATK 459
L P I +S+ ++E + +L +R +LH +
Sbjct: 450 LPPTIKSVTTKISSSAAKPKSFEEDHHADLSMSKLSIET-LETTLFDRLLSLHGADIKRM 508
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLP 518
LTTQYRM++ I S+ S E+Y LI++ V + LL D P+ V+ T T+ PL+ DT+
Sbjct: 509 LTTQYRMHEKIMSFPSSELYESRLIAADHVKARLLRDLPYEVQDTDDTREPLVFYDTQ-- 566
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
G E +L S N+ E IV HV +LI AGV IAV +PY AQV L
Sbjct: 567 -GDEFPERTEEAELLLADSKSNDLEGAIVARHVGNLIAAGVVEEDIAVITPYNAQVALLA 625
Query: 579 ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
+ L + + G+E+ ++D FQGRE +AV++S+VRSN VGFLG+ RR+NVA+TR +H
Sbjct: 626 QLLKE--KYPGLEIGSVDGFQGREKEAVVVSLVRSNPEREVGFLGEKRRLNVAMTRPRRH 683
Query: 639 VAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
+ V DS TI + FL R + + +++ + F
Sbjct: 684 LCVCGDSETISRGSPFLKRWMEFLEENADLRYPDATEF 721
>gi|296425104|ref|XP_002842083.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638341|emb|CAZ86274.1| unnamed protein product [Tuber melanosporum]
Length = 711
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 228/743 (30%), Positives = 346/743 (46%), Gaps = 150/743 (20%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
F ++ ELL+ ERDA++ L +P PI L HG A + NL
Sbjct: 6 FAEKQIELLQAERDADITLQTALLATLP----------PIALL-RHGFA-------LTNL 47
Query: 76 FVVSTSTGLGGMHLV-------LFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATS--- 125
+S TG GG ++ +FR LPP + GD+V RV G A+
Sbjct: 48 LPISQRTGFGGRTIIDLEPDPAIFR---TGLLPPHGIRQGDIV--RVEAQPGGSASKKEK 102
Query: 126 ------CIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERN 179
++G VH + E ++VA+E+ GD GK + + ++ A+ +T++R
Sbjct: 103 TDVKAVGVEGVVHRVFEG--RLAVAVEA-AGDEVDRVWTGKRLWVVKV---ANEITFKRM 156
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFG-----------DKEDVTWLEENDLADWSEVKLD 228
+A+ L+ G ++ I L G +K +V W +E
Sbjct: 157 EKAMGFLKAMG--EKGDIIGLADVLSGRRAAREVGEGYEKMEVNWFDEG----------- 203
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR----------AVQQ 278
+DSQK+A+ L + LI+ GPPGTGKT L EII + +
Sbjct: 204 ------LNDSQKQAVRFALASEEVALIL-GPPGTGKTQTLLEIILQLATPPKTSSSSPPS 256
Query: 279 GERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVK-SKLASFVA 337
+++LV P+N +VDN+V +L L ++R+G+PAR+ P V +SL + + S+ +
Sbjct: 257 PKKILVCGPSNISVDNIVLRLPS-SLPVIRMGHPARLLPKVIERSLDNLTRTSEQGEIIT 315
Query: 338 EFERKKSDLRKDLRQC----LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+ + DL L+ +K + G + ++ L +++EK+ V E++ ++VVL
Sbjct: 316 DVRNEMDDLLSKLKSTGKTRMKGRARKEGW-ETVRHLRGEYREREKKCVTEIVRWSEVVL 374
Query: 394 ATNTGAADPLIRRLDTFDLV------------------------GKRCILAGDQCQLAPV 429
AT GA + + FD+V ++ ILAGD QL P
Sbjct: 375 ATLHGAGSKQLWS-EKFDVVIIDEGSQALEAQCWIPLLLTNKSGIQKLILAGDPMQLPPT 433
Query: 430 ILS------------RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKE 477
I S + + + ++L R +H G + LTTQYRM+ I + S+E
Sbjct: 434 IKSQTTGAIPKTPKTKTEIPDSLEITLFSRLLAIHGGGIKCLLTTQYRMHATIMHFPSQE 493
Query: 478 MYGGSLISSSTVASHLLVDT-PF-VKPTWITQCPLLLLDTRLPYGSL----SLGCEEHLD 531
+Y GSLI++ +VA LL + P+ V T T PLL +DT+ G L S
Sbjct: 494 LYNGSLIAAPSVAERLLCTSLPYPVTKTEDTSIPLLFIDTQ---GGLFPEDSSPPTPSTK 550
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
+ S N EA +V H +LI AGV P I V +PY AQV + + L A VE
Sbjct: 551 SPASESKSNTLEARLVAAHTHALIAAGVRPEDIGVLTPYSAQVSLITKLLRGTYPA--VE 608
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH- 650
V T+DSFQGRE +AV+ S+VRSN G VGFL D RR+NVA+TR H+ VV D+ T+
Sbjct: 609 VNTVDSFQGREKEAVVFSLVRSNDKGEVGFLKDKRRVNVAVTRPRCHLCVVGDAETVGQG 668
Query: 651 --NTFLARLLRHIRYFGRVKHAE 671
TFL R+ G ++ AE
Sbjct: 669 GKGTFLG------RWIGWLESAE 685
>gi|154273843|ref|XP_001537773.1| hypothetical protein HCAG_07195 [Ajellomyces capsulatus NAm1]
gi|150415381|gb|EDN10734.1| hypothetical protein HCAG_07195 [Ajellomyces capsulatus NAm1]
Length = 743
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 191/625 (30%), Positives = 302/625 (48%), Gaps = 104/625 (16%)
Query: 126 CIQGFVHNLGEDGCTISVALESRHG-----DPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
++G V +GE ++ + G + + L+GK V + + LA+ +TY R
Sbjct: 145 ALEGVVTRVGERSIWVAFGGQRVAGGKGRDEESIEDLWGKKVWMVK---LANDITYRRMK 201
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQK 240
+ ++ K G + + +FG D S + + T +DSQ+
Sbjct: 202 Q---IMAKLGSMTESDYTYFMRVVFGHSTPSP-------VDLSSIGTIEFIDPTLNDSQR 251
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300
+AI L K + +I GPPGTGKT L E+I + ++Q R+LV P+N +VDN+VE+L+
Sbjct: 252 EAIQFALAAKE-IALIHGPPGTGKTYTLIELILQFLRQNLRILVCGPSNVSVDNIVERLA 310
Query: 301 DVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA-----EFERKKSDLRK-----DL 350
+ +VR+G+PAR+ AV SL ++++ A+ + E E K++ +RK +
Sbjct: 311 PHKVPLVRIGHPARLLSAVLDHSLEVLIQTSDAAAIVKDIRKEIEVKQAGIRKTRSGRER 370
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
R+ +D LK+L K +++E + V +++ +VVLAT GA +R F
Sbjct: 371 REIYRD----------LKELRKEFRERESKCVGNLVTDCKVVLATLHGAGGHQLRN-QKF 419
Query: 411 DLV-------------------GKRCILAGDQCQLAPVILS------------------- 432
D+V + ILAGD QL P + S
Sbjct: 420 DVVIIDEASQALEAQCWVPLLSASKAILAGDHLQLPPTVKSATLKFSGGVENGKSPDDEQ 479
Query: 433 -------------RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMY 479
KA G + ++L +R +LH + LTTQYRM++ I + S+E+Y
Sbjct: 480 SVLRMGKDSNVGQHKAKGGTLEMTLFDRLLSLHGPAIKRMLTTQYRMHEKIMQFPSQELY 539
Query: 480 GGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG-- 536
LI++ V LL D P+ V+ T T+ PL+ DT+ G EE +
Sbjct: 540 ESKLIAADAVKLRLLKDLPYEVEETDDTREPLVFYDTQ--GGDFPEKVEEPAVMPKQKQI 597
Query: 537 -----SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
S NE EA +V HV +LI AGV P +AV +PY AQ+ L L D + G+E
Sbjct: 598 SLFAESKSNEMEAYLVARHVENLIGAGVKPEDVAVVTPYNAQLALLSSMLKD--KYPGLE 655
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI-CH 650
+ ++D FQGRE +AVI+S+VRSN VGFL + RR+NVA+TR +H+ + DS TI
Sbjct: 656 LGSVDGFQGREKEAVIVSLVRSNPEHEVGFLAEKRRLNVAMTRPKRHLCICGDSETIRGG 715
Query: 651 NTFLARLLRHIRYFGRVKHAEPGSF 675
N FL R + + +++ + G +
Sbjct: 716 NQFLRRWMDFLEENSDLRYPDAGEY 740
>gi|336274090|ref|XP_003351799.1| hypothetical protein SMAC_00344 [Sordaria macrospora k-hell]
gi|380096080|emb|CCC06127.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 712
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 187/552 (33%), Positives = 283/552 (51%), Gaps = 57/552 (10%)
Query: 170 LADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDG 229
LAD +TY R + LQK + + + LFG DL + EV
Sbjct: 170 LADDVTYRRMNGTMEKLQKMSESEHS---MFIRVLFGQSSPSPV--PADLINDPEVGNIE 224
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
+ T +DSQK AI L R + +I GPPGTGKT L E+I + +++ R+LV P+N
Sbjct: 225 WVDPTLNDSQKDAIRFAL-ASREIALIHGPPGTGKTHTLIELILQLLRRDLRILVCGPSN 283
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD 349
+VDN+VE+LS L I+R+G+PAR+ P+V S SL + + A + + R + D ++
Sbjct: 284 ISVDNIVERLSPHKLPILRLGHPARLLPSVLSHSLDVLTTTSDAGAIVKDVRAEMDAKQA 343
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
+ ++ + LK+L K +++E+ V +++ ++VVLAT GA ++ +
Sbjct: 344 SIRKTRNGRERRVVYTELKELRKEYRERERRCVSDLVGRSKVVLATLHGAGGYHLKN-EE 402
Query: 410 FDLV-------------------GKRCILAGDQCQLAPVI--LSRKALEGG--------I 440
FD+V K+ +LAGD QL P I L+ KA +G +
Sbjct: 403 FDVVIIDEASQALEAQCWVPLLWAKKAVLAGDHLQLPPTIKSLNSKASKGDQPKERGPTL 462
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF- 499
+L +R LH + LTTQYRM++ I + S E+Y L+++ V LL D +
Sbjct: 463 ETTLFDRLLALHGPAIKRMLTTQYRMHEKIMRFPSDELYESKLVAAEHVRERLLKDLLYE 522
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG--------------SFYNEGEAE 545
V+ T PL+ +DT+ G EE LD G+ S NE EA
Sbjct: 523 VEDNDDTTEPLVFIDTQ--GGDFPEKNEEELDNNGSATDKKKAIKRSLHGESKSNEMEAA 580
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+V HV SL+ AGV P IAV +PY AQ+ L D+ P G+E+ ++D FQGRE +A
Sbjct: 581 LVKQHVRSLVEAGVRPEDIAVVTPYNAQLSILAPLKDEFP---GIELGSVDGFQGREKEA 637
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYF 664
VI S+VRSN GAVGFLG+ RR+NVA+TR + + V+ DS T+ + FL R + +
Sbjct: 638 VIFSLVRSNDEGAVGFLGEKRRLNVAMTRPKRSLTVIGDSETVKKGSAFLKRWMEFLEEN 697
Query: 665 GRVKHAEPGSFG 676
+++ + S
Sbjct: 698 ADLRYPDVSSLA 709
>gi|453088933|gb|EMF16973.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 705
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 206/694 (29%), Positives = 319/694 (45%), Gaps = 136/694 (19%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE-----GNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ NL V S TG GG L+ ++ LP L GD +C +GA
Sbjct: 47 VLNLTVSSQRTGFGGKTLLELGIDPAVATDGDALPEHGLRVGD-ICAVSEQPKGAEKKKE 105
Query: 127 IQGFVHNLGEDGCT------ISVALESRHGD-PTFSKLFGKSVRIDRIQGLADTLTYERN 179
+G E T I++AL D P++ KL+ + LA+ +T+ R
Sbjct: 106 REGMEQRGAEGVVTRTSKTAITIALNKEDADVPSYGKLW--------LVKLANDVTWRRL 157
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGD----------KEDVTWLEENDLADWSEVKLDG 229
+ ++ L ++ H + LFG KED+ W
Sbjct: 158 NQTMVRLMQSTEHSPLTRV-----LFGQAPTPVSASALKEDLRW---------------- 196
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
T + SQ+ A+ L R + +I GPPGTGKT + E+I + + Q +RVLV P+N
Sbjct: 197 -HHSTLNASQQDAVRYAL-ASREIALIHGPPGTGKTLTVIELILQLLDQKQRVLVCGPSN 254
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVK-SKLASFVA----EFERKKS 344
+VDN+VE+L+ +++VR+G+PAR+ PAV + S+ I + S A+ VA E + K++
Sbjct: 255 ISVDNIVERLASRKVSMVRLGHPARLLPAVLAHSMEVISRTSDAAAIVADIRSEMDTKQA 314
Query: 345 DLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI 404
+RK + ++ L G +K+L K + +E V E+L VVL+T GA +
Sbjct: 315 SIRKT--KSGRERKLIYG---EMKELRKEYRDREGRVVSEILRGCDVVLSTLHGAGSHQL 369
Query: 405 RRLDTFDLV---------------------GKRCILAGDQCQLAPVILSRKALEGG---- 439
+ + FD+V + +LAGD QL P I S +++ G
Sbjct: 370 KN-EKFDVVIVDEASQALEAQCWIPILGVRPSKLVLAGDHLQLPPTIKSLNSVKKGTEPR 428
Query: 440 -----------------------------------IGVSLLERAATLHEGVLATKLTTQY 464
+ ++L +R LH + LTTQY
Sbjct: 429 NKDVGRVEKDIAGLSLEEQKAGASAKKKASKDAITLEITLFDRLLKLHGDDIKRMLTTQY 488
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLS 523
RM++AI ++ S+ MYGG L ++ V + LL D P+ V T PL+ DT+ G
Sbjct: 489 RMHEAIMNFPSEAMYGGHLAAAEAVRTRLLKDLPYEVNEVENTTEPLVFYDTQ--GGDFV 546
Query: 524 LGCEEHLDLAGTGSFY-----NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
E+ + G S NE EA IV HV SL+ AGV IAV +PY Q+ L
Sbjct: 547 EKTEDEDNAKGKSSVLAESKVNEAEALIVRDHVSSLVTAGVKAEDIAVITPYNGQLAMLS 606
Query: 579 ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L + G+E+ +ID FQGRE +AV++S+VRSN VGFL + RR+NVA+TR +
Sbjct: 607 SMLKE--RFPGLELGSIDGFQGREKEAVVVSLVRSNPEHEVGFLSEKRRLNVAMTRPKRQ 664
Query: 639 VAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAE 671
+ V+ DS TI + +L + H+ +++ +
Sbjct: 665 LCVIGDSETISRGSQYLKAWMSHLEEHADLRYPD 698
>gi|347827230|emb|CCD42927.1| similar to DNA helicase [Botryotinia fuckeliana]
Length = 703
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 166/470 (35%), Positives = 256/470 (54%), Gaps = 54/470 (11%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
+ +DSQK AI L + +I GPPGTGKT L E+I + +++ RVLV P+N +VD
Sbjct: 224 SLNDSQKHAIKFALASTE-MALIHGPPGTGKTHTLIELILQMLKRNLRVLVCGPSNISVD 282
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+VE+L+ + IVR+G+PAR+ P+V + SL + ++ A+ + + RK+ D ++ +
Sbjct: 283 NIVERLAPHKVPIVRLGHPARLLPSVVNHSLDVLTQTSEAAAIVQDVRKEMDTKQASIKK 342
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
K I LK+L K +++E++ V ++ ++VVLAT GA +R + FD+V
Sbjct: 343 TKSGKERKAIYGDLKELRKEFRERERKCVNTLVGGSKVVLATLHGAGGFQLRD-EKFDVV 401
Query: 414 -------------------GKRCILAGDQCQLAPVILSRK----------ALEGGIG--- 441
+ +LAGD QL P I S EG I
Sbjct: 402 IIDEASQALEAQCWVPLLSASKVVLAGDHLQLPPTIKSLNFKTKTKSQDTETEGIIKGMT 461
Query: 442 --VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+L +R LH + LTTQYRM++ I + S E+Y L+++ V + LL + P+
Sbjct: 462 LETTLFDRLLKLHGAGIKVMLTTQYRMHEKIMRFPSDELYESKLVAAEAVKARLLTELPY 521
Query: 500 -VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLD-LAGTG----SFYNEGEAEIVVHH 550
V+ T T PL+ DT+ P S EE++D AG G S NE EA +V H
Sbjct: 522 DVEETEDTIEPLIFFDTQGDDFPEKS----EEENVDKKAGKGMLGESKSNEMEAVLVRRH 577
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHL-RERLDDLPEAAGVEVATIDSFQGREADAVIIS 609
V +L+ AG+ P IAV +PY AQ+ + R + P G+E+ ++D FQGRE +A+I+S
Sbjct: 578 VQNLVDAGLKPEDIAVVTPYNAQLALMSRSMKEAFP---GIELGSVDGFQGREKEAIIVS 634
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLL 658
+VRSN+ VGFLG+ RR+NVA+TR + + ++ DS T+ + FL R +
Sbjct: 635 LVRSNSEREVGFLGEKRRLNVAMTRPRRSLTIIGDSETVSRGSKFLKRWM 684
>gi|358391418|gb|EHK40822.1| hypothetical protein TRIATDRAFT_226900 [Trichoderma atroviride IMI
206040]
Length = 687
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 207/651 (31%), Positives = 320/651 (49%), Gaps = 88/651 (13%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFR----VEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
I NL + S TGLGG ++ LP + GD+V V A S
Sbjct: 47 ITNLNISSQRTGLGGKTVLELSPDSATSSTGELPEHGIRTGDIVLVA-----EQPAGSAK 101
Query: 128 QGFVHNLGEDGC----------TISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYE 177
+ + L + G ++VAL+ D FS R+ ++ LAD +TY
Sbjct: 102 KREIKELEKKGARGVVTRVQRAAVNVALDEGKDDVMFSG------RVWMVK-LADEVTYR 154
Query: 178 RNCEALMLLQKNGLHKRNPSIAAVVTLFGDK---EDVTWLEENDLADWSEVKLDGIMGKT 234
R + + LQK G + + I + L ++++ +E +W + T
Sbjct: 155 RMNQTMEKLQKMGEAEYSSFIRVLFGLSSPSPVPQNLSTSDEVGSIEW--------IDPT 206
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+DSQK AI L R + +I GPPGTGKT L E+I + +++ +R+LV P+N +VDN
Sbjct: 207 LNDSQKDAIRFAL-ASREVALIHGPPGTGKTHTLIELILQMIKRNQRILVCGPSNISVDN 265
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+VE+LS + I+R+G+PAR+ P+V + SL + ++ A + + R + D ++ +
Sbjct: 266 IVERLSPHKIPILRLGHPARLLPSVLNHSLDVLTQTSEAGAIVKDVRAEMDAKQASIKKT 325
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
K I LK+L K +++E+ V ++ ++VVLAT GA +R + FD+V
Sbjct: 326 KSGKERKAIYTDLKELRKEYRERERRCVSNLVGGSKVVLATLHGAGGFQLRN-EQFDVVI 384
Query: 414 ------------------GKRCILAGDQCQLAPVILSR----KAL---EGGIG------- 441
K+ + AGD QL P I S KAL EG G
Sbjct: 385 IDEASQALEAQCWVPLLSAKKAVCAGDHLQLPPTIKSLNSKVKALKVKEGDDGTPVIRGM 444
Query: 442 ---VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+L +R LH + LTTQYRM++ I + S E+YG LI++ V + LL D
Sbjct: 445 TLETTLFDRLLALHGPSIKRMLTTQYRMHEKIMRFPSDELYGSELIAADAVKARLLKDLE 504
Query: 499 F-VKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFY-----NEGEAEIVVHHV 551
+ V+ T PL+ +DT+ G E + D G+ + N+ EA +V HV
Sbjct: 505 YDVQGNEDTTEPLIFIDTQ--GGDFPERNEDDDKDGPKRGNLHGESKSNDMEAALVRLHV 562
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
L+ AGV P IAV +PY AQ+ L + P G+E+ ++D FQGRE +AVI+S+V
Sbjct: 563 KQLVEAGVRPEDIAVVTPYNAQLAALATLKEKFP---GIELGSVDGFQGREKEAVIVSLV 619
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHI 661
RSN G VGFLG+ RR+NVA+TR + + V+ DS T+ + FL + + +
Sbjct: 620 RSNPDGEVGFLGEKRRLNVAMTRPKRSLTVIGDSETVKRGSKFLKKWMEFL 670
>gi|429849984|gb|ELA25306.1| DNA-binding protein smubp-2 [Colletotrichum gloeosporioides Nara
gc5]
Length = 665
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 208/651 (31%), Positives = 321/651 (49%), Gaps = 112/651 (17%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE------GNHRLPPTTLSPGDMVC------------- 112
+ NL V + TGLGG ++ + +LP L PGD+V
Sbjct: 51 LSNLVVGARRTGLGGRTVLELNPDPAVSSSAEGKLPEHGLRPGDIVLLSEQPAGNAKKRE 110
Query: 113 VRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLAD 172
V+ +S+GA +G V + + ++ +A++ G+ + F V + ++ AD
Sbjct: 111 VKELESKGA------RGVVTRVRHE--SVGIAVDEGKGE---EREFDGRVWVVKV---AD 156
Query: 173 TLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMG 232
+TY R + L+K + + + + LFG +DLA SE+ +
Sbjct: 157 DVTYRRMNLTMEKLEKMTEAEYS---SFMRVLFGLSSPSPV--PSDLASDSELSKIQWID 211
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+ +DSQK AI L R + +I GPPGTGKT L E+I + ++ R+LV P+N +V
Sbjct: 212 PSLNDSQKDAIRFAL-ASREVALIHGPPGTGKTHTLIELILQMLKLDLRILVCGPSNISV 270
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV-----AEFERKKSDLR 347
DN+VE+LS + I+R+G+PAR+ P+V + SL + ++ A + AE + K++ ++
Sbjct: 271 DNIVERLSPHKIPILRLGHPARLLPSVVAHSLDVLTQTSEAGAIVKDVRAEMDAKQASIK 330
Query: 348 K-----DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
K + RQ D LK+L K +++E+ V ++ ++VVLAT GA
Sbjct: 331 KTRNGRERRQIYGD----------LKELRKEFRERERRCVSNLVRESKVVLATLHGAGGH 380
Query: 403 LIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILS-----RKALEG 438
+R FD+V K+ + AGD QL P I S +K L
Sbjct: 381 QLRD-QQFDVVIIDEASQALEAQCWVPLLSAKKAVCAGDHLQLPPTIKSLNSKVKKVLVE 439
Query: 439 GIG----------VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSST 488
G G +L +R LH + LTTQYRM++ I + S E+Y G LI++
Sbjct: 440 GAGEKQIKGMTLETTLFDRLLALHGSSIKRMLTTQYRMHEKIMRFPSDELYDGRLIAAEA 499
Query: 489 VASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSF------ 538
V LL D P+ V+ T T PL+ +DT+ P S ++ D F
Sbjct: 500 VKERLLKDLPYEVQDTEDTNEPLIFIDTQGGDYPEKS----EDDDKDAVKKAKFSLHGES 555
Query: 539 -YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDS 597
NE EA +V H SL+ AGV P IAV +PY AQ+ L + P G+E+ ++D
Sbjct: 556 KSNEMEAALVRQHAQSLVDAGVKPEDIAVVTPYNAQLAILAPLKEQFP---GIELGSVDG 612
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
FQGRE +AVI+S+VRSN+ G VGFLG+ RR+NVA+TR + + V+ DS T+
Sbjct: 613 FQGREKEAVIVSLVRSNSEGEVGFLGEKRRLNVAMTRPKRSLTVIGDSETV 663
>gi|315045920|ref|XP_003172335.1| DNA-binding protein SMUBP-2 [Arthroderma gypseum CBS 118893]
gi|311342721|gb|EFR01924.1| DNA-binding protein SMUBP-2 [Arthroderma gypseum CBS 118893]
Length = 717
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 205/703 (29%), Positives = 331/703 (47%), Gaps = 119/703 (16%)
Query: 63 RAPQELCDTICNLFVVSTSTGLGGMHLVLFRV----------------EGNHRLPPTTLS 106
RA Q + + + + TG+GG + F + E N RL ++
Sbjct: 42 RALQNAGHALTGMVLTNCRTGMGGREVGEFSLDTALSGSGRSKGASKDEDNTRLGVHGIT 101
Query: 107 PGDMVCVRVCDSRGACATSC------------IQGFVHNLGEDGCTISVAL--ESRHGDP 152
GD+V V S G T ++G V +GE + + + +
Sbjct: 102 VGDIVRVEEISS-GKTTTKSKAGQDDEKSHRGLEGVVTRVGERAIWAAFGDRGKGKQDED 160
Query: 153 TFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFG------ 206
+L+G+ + + + LA+ +TY R +M L+K + + + LFG
Sbjct: 161 GVDELWGRKLWLVK---LANDVTYRRMNMTMMKLEK---MQESEYSQLIRVLFGHTTPSP 214
Query: 207 -DKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
D E V LE M + + SQK+AI L R + +I GPPGTGKT
Sbjct: 215 LDFESVGQLE--------------FMDGSLNGSQKEAIRFAL-ASREIALIHGPPGTGKT 259
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E+I + VQ+ +RVLV P+N +VDN+VE+L+ +++VR+G+PAR+ +V SL
Sbjct: 260 HTLIELIRQLVQRKKRVLVCGPSNISVDNIVERLASQKVSLVRIGHPARLLSSVLDHSLE 319
Query: 326 EIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEV 385
+ ++ A+ + + RK+ DL++ + ++ I L++L K +++E + V +
Sbjct: 320 VLSQTSEAAAIVKDVRKEIDLKQASIRKTRNGRERRAIYGDLRELRKEFRERESKCVDNI 379
Query: 386 LSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQL 426
+S +QVVL T GA ++ FD+V + ILAGD QL
Sbjct: 380 VSGSQVVLGTLHGAGGHQLKN-QKFDVVIIDEASQAREAQCWIPLLSASKVILAGDHLQL 438
Query: 427 APVILSRKALEGG-------------------------IGVSLLERAATLHEGVLATKLT 461
P I SR + + G + ++L +R +LH + LT
Sbjct: 439 PPTIKSRSSSKPGQNNSALWDKEDLDLTELSNKFDMRNLEITLFDRLLSLHGTAIKRMLT 498
Query: 462 TQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---- 516
TQYRM+ I + S E+Y LI++ V LL D P+ ++ T PL+ DT+
Sbjct: 499 TQYRMHQKIMDFPSGELYESKLIAADAVRERLLKDLPYEIEDIDDTIEPLVFYDTQGGDF 558
Query: 517 --LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
S S+ + L S N+ EAE+V HV +L+ AGV P IAV +PY AQV
Sbjct: 559 LEKSPDSTSISAKSLL----VESKCNDMEAEVVARHVENLVSAGVRPEDIAVITPYNAQV 614
Query: 575 QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN-VAIT 633
L + L + +E+ ++D FQGRE +AV++S+VRSN+ VGFLG+ RR+N VA+T
Sbjct: 615 ALLSQLLKQ--KFPTLELGSVDGFQGREKEAVVVSLVRSNSDHEVGFLGEKRRLNAVAMT 672
Query: 634 RACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
R +H+ + DS T+ + FL R + + +++ + F
Sbjct: 673 RPRRHLCICGDSETVGSGSPFLKRWMAFLEENADLRYPDISEF 715
>gi|119191656|ref|XP_001246434.1| hypothetical protein CIMG_00205 [Coccidioides immitis RS]
Length = 708
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 193/594 (32%), Positives = 299/594 (50%), Gaps = 101/594 (17%)
Query: 121 ACATSCIQGFVHNLGEDGCTISVALESRHG---DPTFSKLFGKSVRIDRIQGLADTLTYE 177
A T ++G V +GE ++ R G D + L+G+ + + + LA+ +TY
Sbjct: 148 ADVTKGLEGVVTKIGERSVWVAFDERGRPGKQDDDGAAGLWGQKLWLVK---LANDITYR 204
Query: 178 RNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDD 237
R + ++ ++K + + + + LFG DWS + + +D
Sbjct: 205 RMKQTMVRMEKMAESEHS---SFMRVLFGHTTPSP-------PDWSSASSLDFIDPSLND 254
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQK+AI L R + +I GPPGTGKT L E+I + +++ R+LV P+N +VDN+VE
Sbjct: 255 SQKEAIRFAL-ASREIALIHGPPGTGKTHTLIELILQLLRRNLRILVCGPSNISVDNIVE 313
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA-----EFERKKSDLRK---- 348
+L+ + +VR+G+PAR+ +V SL + ++ A+ + E + K++ +RK
Sbjct: 314 RLAPHKIPLVRIGHPARLLSSVVDHSLEALTQTSDAAAIVKDVRREIDEKQASIRKTRSG 373
Query: 349 -DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL 407
+ R+ KD LK+L K +++E V +++ ++VVLAT GA ++
Sbjct: 374 RERREIYKD----------LKELRKEFREREARCVDHLVTESKVVLATLHGAGGHQLKN- 422
Query: 408 DTFDLV-------------------GKRCILAGDQCQLAPVIL----------SRK---- 434
FD+V + ILAGD QL P I SRK
Sbjct: 423 QKFDVVLIDEASQALEAQCWVPLLSASKAILAGDHLQLPPTIKSTTTNTPSGSSRKLKSS 482
Query: 435 -ALEGG-------------IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYG 480
A++ G + +L +R +LH + LTTQYRM++ I S+ S E+Y
Sbjct: 483 NAIQSGADDLTISSLSITSLETTLFDRLLSLHGPTIKRMLTTQYRMHEKIMSFPSCELYE 542
Query: 481 GSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEE-HLDLAGTGSF 538
LI++ V + LL D P ++ T T PL+ DT+ G E+ L LA + S
Sbjct: 543 SKLIAADHVKARLLKDLPCDIQDTDDTCEPLVFYDTQ--GGEFPERIEDGELLLADSKS- 599
Query: 539 YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVAT 594
N+ EA +V HV +LI AG+ IAV +PY AQV Q LRER G+E+ +
Sbjct: 600 -NDLEAAVVARHVQNLIAAGLREEDIAVITPYNAQVALLAQLLRER------HPGLEIGS 652
Query: 595 IDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+D FQGRE +AV++S+VRSN VGFLG+ RR+NVA+TR KH+ V DS TI
Sbjct: 653 VDGFQGREKEAVVVSLVRSNAEREVGFLGEKRRLNVAMTRPRKHLCVCGDSETI 706
>gi|342890168|gb|EGU89032.1| hypothetical protein FOXB_00444 [Fusarium oxysporum Fo5176]
Length = 1016
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 209/666 (31%), Positives = 322/666 (48%), Gaps = 92/666 (13%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEGN----HRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ NL V TGLGG ++ + LP L GD+V V A S
Sbjct: 378 LTNLVVSGQRTGLGGRTVLELSPDAATGSPDELPEHGLRTGDIVLVA-----EQPAGSAK 432
Query: 128 QGFVHNLGEDGCT----------ISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYE 177
+ V +L + G ++VA++ + FS R+ ++ LAD +TY+
Sbjct: 433 KREVKDLEKKGARGVVTRVSRGWVAVAIDEGKEEVGFSG------RVWAVK-LADEVTYK 485
Query: 178 RNCEALMLLQKNGLHKRNPSIAAVVTLFG------DKEDVTWLEENDLADWSEVKLDGIM 231
R A+ L K K + + LFG ED++ E +W
Sbjct: 486 RMNWAMEKLNK---MKESEYSGFIRVLFGLSSPSPVAEDLSKDENVGDLEW--------F 534
Query: 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAA 291
T +DSQK AI L R + +I GPPGTGKT L E+I + + G+R+LV P+N +
Sbjct: 535 DPTLNDSQKNAIRFAL-LSREVALIHGPPGTGKTHTLIELILQMTKLGQRILVCGPSNIS 593
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
VDN+VE+L+ + I+R+G+PAR+ P+V SL + ++ A + + R + D ++
Sbjct: 594 VDNIVERLAPHKIPILRLGHPARLLPSVVDHSLDVLTQTSEAGAIVKDIRTEMDTKQASI 653
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ K I LK+L K +++E+ V ++ ++V+LAT GA +R D FD
Sbjct: 654 KKTKSGKERKAIYTDLKELRKEFRERERRCVSTLIGGSKVLLATLHGAGGYQLRN-DEFD 712
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKA-----LEGGIGV----- 442
+V K+ + AGD QL P I S A ++ G V
Sbjct: 713 VVIIDEASQALEAQCWVPLVSAKKVVCAGDHLQLPPTIKSSNAKVKAPVKDGAAVTKGTT 772
Query: 443 ---SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+L +R LH + LTTQYRM+++I + S E+Y LI++ V LL D +
Sbjct: 773 LEITLFDRLLALHGPSIKRMLTTQYRMHESIMRFPSDELYDSKLIAADAVKHRLLKDLEY 832
Query: 500 -VKPTWITQCPLLLLDTRLPYGSLSLGCEE-HLDLAGTG-------SFYNEGEAEIVVHH 550
V+ T P++ +DT+ G EE D G S NE EA +V H
Sbjct: 833 EVQDNEDTNEPVIFIDTQ--GGDFPEKNEEDDKDTPRKGRAGLHGDSKSNEMEAALVQQH 890
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
V L+ AGV P IAV +PY AQ+ L D P G+E+ ++D FQGRE +AVI+S+
Sbjct: 891 VRQLVGAGVRPEDIAVVTPYNAQLAILAPLKDKFP---GIELGSVDGFQGREKEAVIVSL 947
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH-NTFLARLLRHIRYFGRVKH 669
VRSN+ G VGFLG+ RR+NVA+TR + + V+ DS T+ +FL + ++++ +++
Sbjct: 948 VRSNSEGEVGFLGEKRRLNVAMTRPKRSLTVIGDSETVQRGGSFLKKWMQYLEDNADLRY 1007
Query: 670 AEPGSF 675
+ S
Sbjct: 1008 PDASSL 1013
>gi|296806473|ref|XP_002844046.1| DNA-binding protein SMUBP-2 [Arthroderma otae CBS 113480]
gi|238845348|gb|EEQ35010.1| DNA-binding protein SMUBP-2 [Arthroderma otae CBS 113480]
Length = 720
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 191/615 (31%), Positives = 302/615 (49%), Gaps = 100/615 (16%)
Query: 127 IQGFVHNLGEDGCTISVALESR----HGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEA 182
++G V +GE +I A R D +L+G+ + + + LA+ +TY R +
Sbjct: 138 LEGVVTRVGER--SIWAAFGDRGKGKQDDDGVDELWGRKLWLVK---LANDVTYRRMNQT 192
Query: 183 LMLLQKNGLHKRNPSIAAVVTLFG-------DKEDVTWLEENDLADWSEVKLDGIMGKTF 235
+M L+K + + + LFG D E V LE M +
Sbjct: 193 MMKLEK---MEESEYSQLIRVLFGHTTPSPLDLESVGPLE--------------FMDPSL 235
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
+DSQ++A+ L R + +I GPPGTGKT L E+I + V + +R+LV P+N +VDN+
Sbjct: 236 NDSQREAVRFAL-ASREIALIHGPPGTGKTHTLIELIRQLVLRKKRILVCGPSNISVDNI 294
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
VE+L+ + +VR+G+PAR+ +V SL + ++ A+ + + RK+ D ++ + +
Sbjct: 295 VERLASHKVPLVRIGHPARLLSSVLDHSLEVLSQTSEAAAIVKDVRKEIDAKQASIRKTR 354
Query: 356 DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-- 413
+ I L++L K +++E + V ++S +QVVL T GA ++ FD+V
Sbjct: 355 NGRERRAIYGDLRELRKEFRERESKCVDNIVSGSQVVLGTLHGAGGHQLKN-QKFDVVLI 413
Query: 414 -----------------GKRCILAGDQCQLAPVILSR---KALEG--------------- 438
+ ILAGD QL P I S+ K EG
Sbjct: 414 DEASQAREAQCWIPLLAASKVILAGDHLQLPPTIKSKVSSKPSEGNSVLRDQTDLDTNDL 473
Query: 439 ------GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH 492
+ ++L +R +LH + LTTQYRM+ I + S E+Y LI++ V
Sbjct: 474 SKLDMRNLEITLFDRLLSLHGPGIKRMLTTQYRMHQMIMDFPSHELYESKLIAAGAVKER 533
Query: 493 LLVDTPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAG-------TGSFYNE 541
LL D P+ V+ T T+ PL+ DT+ P E+ D G S N+
Sbjct: 534 LLKDLPYEVEETDDTREPLIFYDTQGGDFP--------EKSPDSTGILAKSVLVESKCND 585
Query: 542 GEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGR 601
EA +V HV L+ AGV P IAV +PY AQV L + L + + +E+ ++D FQGR
Sbjct: 586 MEAAVVARHVEKLVSAGVRPDDIAVITPYNAQVALLSQLLKE--KFPTLELGSVDGFQGR 643
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRH 660
E +AV++S+VRSN VGFLG+ RR+NVA+TR +H+ V DS T+ + FL R L
Sbjct: 644 EKEAVVVSLVRSNLDHEVGFLGEKRRLNVAMTRPRRHLCVCGDSVTVSSGSPFLKRWLAF 703
Query: 661 IRYFGRVKHAEPGSF 675
+ +++ + F
Sbjct: 704 LEENADLRYPDLSEF 718
>gi|303286453|ref|XP_003062516.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456033|gb|EEH53335.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 648
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 168/466 (36%), Positives = 246/466 (52%), Gaps = 58/466 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
D SQK A+A L + L +I GPPGTGKT ++ E +AR V +G R+L A +N AVDN
Sbjct: 195 LDASQKDAVAHAL-RAVDLALIHGPPGTGKTTVVVEYVAREVARGARILCCAASNVAVDN 253
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+VE+L+ I R+G+PAR+ +V SL ++++S +S + ER+ + LR+ L +
Sbjct: 254 LVERLA----RITRLGHPARLLASVLENSLEAQVLRSDNSSLARDCERESAALRRRLLKL 309
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIR--RLDTFD 411
+ L++L K + +++ V EV++SA VV T GA +++ TFD
Sbjct: 310 ADAKTREGAFSLELRRLAKETRARQRLAVDEVVASANVVCCTLAGALGGVLKDQARSTFD 369
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERA-ATL 451
+V G + +LAGD QL P +LS A G+ +L +RA A
Sbjct: 370 VVVIDEAAQALEASCWGAIMRGGKVVLAGDHLQLPPTVLSDVAAREGLSETLFQRAHAKW 429
Query: 452 HEGVLATKLTTQYRMNDAIAS---WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC 508
+ +A LTTQYRM++ I WAS MY G+L++S L
Sbjct: 430 YRENVAVMLTTQYRMHEDIMRRVLWASNAMYDGALLASEDARGRTLRSA----------- 478
Query: 509 PLLLLDTRLPYGSLSL------GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG-VSP 561
+ P G+L L C+E + G S N GEA + + V LI +G V+
Sbjct: 479 ------SGAPLGALQLVDTAGCDCDERQEEEG-ASRDNPGEAAVAMRIVADLISSGAVAA 531
Query: 562 SAIAVQSPYVAQVQHLRE-RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+ + +PY AQV LR+ R + GVE++T+D FQGRE +A++IS VRSN G VG
Sbjct: 532 DDVGIITPYSAQVGTLRDLRAANDALFKGVEISTVDGFQGREKEAIVISAVRSNDRGDVG 591
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICH-NTFLARLLRHIRYFG 665
FL D+RRMNVA+TRA +VCD+ TI + FLA L++H G
Sbjct: 592 FLSDARRMNVAVTRARARCVLVCDTETIARKDAFLAGLVKHFETRG 637
>gi|397615124|gb|EJK63238.1| hypothetical protein THAOC_16125 [Thalassiosira oceanica]
Length = 1008
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 182/565 (32%), Positives = 276/565 (48%), Gaps = 91/565 (16%)
Query: 176 YERNCEALMLLQKNGLHKRNPSIAAVVTLF--GDKEDVTWLEENDLADWSEVKLDGIMGK 233
+ + AL+ L+K+ R+P+I + F D + T L + ++ + G+
Sbjct: 187 HRKMVSALVQLEKSASDDRSPAIDIIRAAFQSNDPKFRTDLSRTGIEEFE--RECGLSET 244
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV-QQGERVLVTAPTNAAV 292
D SQ++A+ L P+ +I GPPGTGKT + +I AV ++G +VLVTAP+N AV
Sbjct: 245 RLDYSQREAVITALYSNSPINLILGPPGTGKTITVAHLIQAAVHKKGWKVLVTAPSNVAV 304
Query: 293 DNMVEKL--------------------SDVGLNIVRVGNPARISPAVASKSLGEIVKSKL 332
DN++E+L + + VR+G+PARI + SL V+S
Sbjct: 305 DNVLERLMRLEGCSGPDHGKRKGKKKGNGRNIKAVRLGHPARIQQGIQGYSLESRVQS-- 362
Query: 333 ASFVAEFERKKSDLRKDLRQCLKDDSLAAG-------IRQLLKQLGKTLKKKEKETVKEV 385
AE D R +L+Q +K S A + +K L K ++++E++ V ++
Sbjct: 363 ----AEGTEIVKDCRCELKQYIKTLSDAKSRPGEKRTAYREMKSLRKEIRQREEKVVGQI 418
Query: 386 LSSAQVVLATNTGAADPLIRRL-------DTFDLV-------------------GKRCIL 419
L + VV ATN GAA L +R+ FDLV G R +L
Sbjct: 419 LRESNVVFATNVGAASSLFKRMVGSNGEPIVFDLVVIDEAGQALEASCWISLLKGNRAVL 478
Query: 420 AGDQCQLAPVILSR-KALEGGIGVSLLERAATLHEGVLATKLTT-QYRMNDAIASWASKE 477
AGD QL P + S ++ G+ +L ER +E + L + Y M + WAS+
Sbjct: 479 AGDHKQLPPTVKSSVPEVQRGLSRTLFERLMMAYE---SNDLRSCGYSMLKVQSDWASEA 535
Query: 478 MYGGSLISSSTVASHLLVDTPFV----------KPTWITQCPLLLLDTRLPYGSLSLGCE 527
MY G L+S +V L D P + + + LLL+DT GC+
Sbjct: 536 MYSGQLVSHESVRDRKLSDLPQIVNGKDHDADRTDSTLHSTTLLLVDT--------TGCD 587
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
H GS NEGEA IVV HV L+ G+ +A+ +PY QV+ LR L LP+
Sbjct: 588 MHEMENSAGSRKNEGEAAIVVSHVNMLLALGLRAEDMAIITPYNGQVELLRNLL--LPQV 645
Query: 588 AGVEVATIDSFQGREADAVIISMVRSNTLG--AVGFLGDSRRMNVAITRACKHVAVVCDS 645
+E+ ++D FQG E +AV++S+VRS+ G +GFL D+RR+NVA+TRA +H AV+CD
Sbjct: 646 PNLEIRSVDGFQGGEREAVVLSLVRSSDRGRDGIGFLSDARRLNVAVTRARRHCAVICDV 705
Query: 646 STICHNTFLARLLRHIRYFGRVKHA 670
T+ N F+ L + G + A
Sbjct: 706 ETVSRNKFIKGLTDWMEDKGEYRSA 730
>gi|154311776|ref|XP_001555217.1| hypothetical protein BC1G_06347 [Botryotinia fuckeliana B05.10]
Length = 675
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 163/460 (35%), Positives = 251/460 (54%), Gaps = 53/460 (11%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
+ +DSQK AI L + +I GPPGTGKT L E+I + +++ RVLV P+N +VD
Sbjct: 224 SLNDSQKHAIKFALASTE-MALIHGPPGTGKTHTLIELILQMLKRNLRVLVCGPSNISVD 282
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+VE+L+ + IVR+G+PAR+ P+V + SL + ++ A+ + + RK+ D ++ +
Sbjct: 283 NIVERLAPHKVPIVRLGHPARLLPSVVNHSLDVLTQTSEAAAIVQDVRKEMDTKQASIKK 342
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
K I LK+L K +++E++ V ++ ++VVLAT GA +R + FD+V
Sbjct: 343 TKSGKERKAIYGDLKELRKEFRERERKCVNTLVGGSKVVLATLHGAGGFQLRD-EKFDVV 401
Query: 414 -------------------GKRCILAGDQCQLAPVILSRK----------ALEGGIG--- 441
+ +LAGD QL P I S EG I
Sbjct: 402 IIDEASQALEAQCWVPLLSASKVVLAGDHLQLPPTIKSLNFKTKTKSQDTETEGIIKGMT 461
Query: 442 --VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+L +R LH + LTTQYRM++ I + S E+Y L+++ V + LL + P+
Sbjct: 462 LETTLFDRLLKLHGAGIKVMLTTQYRMHEKIMRFPSDELYESKLVAAEAVKARLLTELPY 521
Query: 500 -VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLD-LAGTG----SFYNEGEAEIVVHH 550
V+ T T PL+ DT+ P S EE++D AG G S NE EA +V H
Sbjct: 522 DVEETEDTIEPLIFFDTQGDDFPEKS----EEENVDKKAGKGMLGESKSNEMEAVLVRRH 577
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHL-RERLDDLPEAAGVEVATIDSFQGREADAVIIS 609
V +L+ AG+ P IAV +PY AQ+ + R + P G+E+ ++D FQGRE +A+I+S
Sbjct: 578 VQNLVDAGLKPEDIAVVTPYNAQLALMSRSMKEAFP---GIELGSVDGFQGREKEAIIVS 634
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
+VRSN+ VGFLG+ RR+NVA+TR + + ++ DS T+
Sbjct: 635 LVRSNSEREVGFLGEKRRLNVAMTRPRRSLTIIGDSETVS 674
>gi|255729912|ref|XP_002549881.1| hypothetical protein CTRG_04178 [Candida tropicalis MYA-3404]
gi|240132950|gb|EER32507.1| hypothetical protein CTRG_04178 [Candida tropicalis MYA-3404]
Length = 705
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 201/648 (31%), Positives = 318/648 (49%), Gaps = 95/648 (14%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE----GNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
I NL + + TGLGG ++ +++ + +TL GD+V + S S
Sbjct: 73 IINLQIANIRTGLGGKTILELQLDPGFSATDEINTSTLRTGDIVRLSRMSSSKPDKKSKK 132
Query: 128 QGFVHNLGEDGC----------TISVALESRHGDPTFSKLFG----KSVRIDRIQGLADT 173
G DG IS++++ + D + + ++ R+ ++ LA++
Sbjct: 133 DG--EESTSDGIDAVVLKVTTQAISISVDEANDDSKVLQYYNNTNDQNSRMWLVK-LANS 189
Query: 174 LTYERNCEALMLLQK-NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMG 232
+TY+R LM + K N L +N I + L G+ + + S +KL+ I
Sbjct: 190 ITYKR---MLMSMDKVNALEDKN-DIHRI--LLGESKYIP-------KPTSNLKLEFIND 236
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAA 291
+ +DSQK+AI +NK + II GPPGTGKT L E+I + GE+VLV P+N +
Sbjct: 237 R-LNDSQKEAIDFAINKSN-ITIIHGPPGTGKTYTLIELIQQLTNNLGEKVLVCGPSNIS 294
Query: 292 VDNMVEKLSDVGLN---IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK 348
VD ++E+L D ++R+G+PAR+ P + SL + KS + + E+
Sbjct: 295 VDTILERLHDKYKKPEKLIRMGHPARLLPGNLAHSLEILSKSYGHDVIKDIEKDIQSTLS 354
Query: 349 DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD 408
+++C K + + Q LK L K LK++EK+ V E+L +QVV++T GA
Sbjct: 355 QIKKC-KRYAERKALYQELKLLRKELKQREKKIVAELLQQSQVVISTLHGAG-------- 405
Query: 409 TFDLVG-----------------------------KRCILAGDQCQLAPVILSRKALEGG 439
+FDL G KR ++AGD QL P I +K E
Sbjct: 406 SFDLKGVSFDTIIIDEVSQSLEPQCWIPLLLTSNFKRLVIAGDNMQLPPTIKCKKN-ESF 464
Query: 440 IGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+G +L +R +G KL QYRMN +I + S ++Y L+ S+V L+D P
Sbjct: 465 LGTTLFDRLVKQCDGDSFRKLLNVQYRMNQSIMEFPSMQLYDNKLLCDSSVKDISLLDLP 524
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG 558
V+ T + DT+ G E ++ G S YNE E +V H+ L+ +G
Sbjct: 525 GVEDNETTSAKCIWYDTQ--GGEFPEQINESIE--GGDSKYNEMEILVVQGHLQKLLDSG 580
Query: 559 VSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA 618
V P I + SPY AQVQ L++++ +PE VEV T+D FQGRE + +I+S+VRSN
Sbjct: 581 VRPQDIGIISPYAAQVQLLKKKV--VPE---VEVHTVDGFQGREKEVIILSLVRSNDDRE 635
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICH-----NTFLARLLRHI 661
+GFL + RR+NVAITR +H+ +V D + N+FL + +++
Sbjct: 636 IGFLSEQRRLNVAITRPKRHLCIVGDLELLNQGGQGSNSFLRKWCKYV 683
>gi|327304821|ref|XP_003237102.1| DNA helicase [Trichophyton rubrum CBS 118892]
gi|326460100|gb|EGD85553.1| DNA helicase [Trichophyton rubrum CBS 118892]
Length = 717
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 199/647 (30%), Positives = 313/647 (48%), Gaps = 87/647 (13%)
Query: 95 EGNHRLPPTTLSPGDMVCVRVCDSRGACATS-----------CIQGFVHNLGEDGCTISV 143
E N RL ++ GD+V V S A S ++G V +GE +I
Sbjct: 90 EDNTRLGVHGITVGDIVRVEEIASGKTAAKSKAGQDDDKNQRGLEGVVTRVGER--SIWA 147
Query: 144 ALESR----HGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIA 199
A R + +L+G+ + + + LA+ +TY R + + L+K L + S
Sbjct: 148 AFGDRGKGKQDEDGVDELWGRKLWLVK---LANDVTYRRMNQTMAKLEK--LQESEHS-Q 201
Query: 200 AVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGP 259
+ LFG + D+ V M + +DSQK+AI L R + +I GP
Sbjct: 202 LIRVLFGHTTPLPL-------DFESVGPLEFMDPSLNDSQKEAIRFAL-ASREIALIHGP 253
Query: 260 PGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAV 319
PGTGKT L E+I + VQ+ +RVLV P+N +VDN+VE+L+ + +VRVG+PAR+ +V
Sbjct: 254 PGTGKTHTLIELIRQLVQRKKRVLVCGPSNISVDNIVERLASHKVPLVRVGHPARLLSSV 313
Query: 320 ASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEK 379
SL + ++ A+ + + RK+ D ++ + ++ I LK+L K +++E
Sbjct: 314 LDHSLEVLSQTSEAAAIVKDVRKEIDSKQASIRKTRNGRERRAIYGDLKELRKEFRERES 373
Query: 380 ETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILA 420
+ V ++S +QVVL T GA ++ FD+V R +LA
Sbjct: 374 KCVDNIVSGSQVVLGTLHGAGGHQLKN-QKFDVVLIDEASQAREAQCWIPLLPASRVVLA 432
Query: 421 GDQCQLAPVILSRKALE--------------------------GGIGVSLLERAATLHEG 454
GD QL P I S+ + + ++L +R +LH
Sbjct: 433 GDHLQLPPTIKSKSSSNLYQINSALWDKKEDLHFNELSNTFDMRNLEITLFDRLLSLHGT 492
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLL 513
+ LTTQYRM+ I + S E+Y LI++ V LL D + V+ T T+ PL+
Sbjct: 493 GIKRMLTTQYRMHQKIMDFPSDELYESKLIAADAVRERLLKDLHYEVEDTDDTREPLVFY 552
Query: 514 DTR----LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
DT+ L S G L S N+ EA +V HV +L+ AGV P IAV +P
Sbjct: 553 DTQGGDFLEKSPDSNGISAKSLL--VESKCNDMEAAVVARHVENLVSAGVRPEDIAVITP 610
Query: 570 YVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
Y AQV L + L + + +E+ ++D FQGRE +AV++S+VRSN VGFLG+ RR+N
Sbjct: 611 YNAQVALLSQLLKE--KFPTLELGSVDGFQGREKEAVVVSLVRSNQDHEVGFLGEKRRLN 668
Query: 630 VAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
VA+TR +H+ + DS T+ + FL R + + +++ + F
Sbjct: 669 VAMTRPRRHLCICGDSETVSSGSPFLKRWMAFLEENADLRYPDISEF 715
>gi|225559206|gb|EEH07489.1| helicase [Ajellomyces capsulatus G186AR]
Length = 732
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 171/525 (32%), Positives = 264/525 (50%), Gaps = 86/525 (16%)
Query: 221 DWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE 280
D S + + T +DSQ++AI L K + +I GPPGTGKT L E+I + ++Q
Sbjct: 221 DLSSIGTIEFIDPTLNDSQREAIRFALAAKE-IALIHGPPGTGKTYTLIELILQFLRQNL 279
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA--- 337
R+LV P+N +VDN+VE+L+ + +VR+G+PAR+ V SL ++++ A+ +
Sbjct: 280 RILVCGPSNVSVDNIVERLAPHKVPLVRIGHPARLLSTVLDHSLEVLIQTSDAAAIVKDI 339
Query: 338 --EFERKKSDLRK-----DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQ 390
E E K++ +RK + R+ +D LK+L K +++E + V +++ +
Sbjct: 340 RKEIEVKQASIRKTRSGRERREIYRD----------LKELRKEFRERESKCVGNLVTDCK 389
Query: 391 VVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVIL 431
VVLAT GA +R FD+V + ILAGD QL P +
Sbjct: 390 VVLATLHGAGGHQLRN-QKFDVVIIDEASQALEAQCWVPLLSASKAILAGDHLQLPPTVK 448
Query: 432 S--------------------------------RKALEGGIGVSLLERAATLHEGVLATK 459
S KA G + ++L +R +LH +
Sbjct: 449 SATLKFSGAVGSGKSPDDEQSVLRMDKDNNVGQHKAKGGTLEMTLFDRLLSLHGPAIKRM 508
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLP 518
LTTQYRM++ I + S+E+Y LI++ V LL D P+ V+ T T+ PL+ DT+
Sbjct: 509 LTTQYRMHEKIMQFPSQELYESKLIAADAVKLRLLKDLPYEVEETDDTREPLVFYDTQ-- 566
Query: 519 YGSLSLGCEEHLDLAGTG-------SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
G EE + S N+ EA +V HV +LI AGV P +AV +PY
Sbjct: 567 GGDFPEKVEEPAVMPKQKQISLFAESKSNDMEAYLVARHVENLIGAGVKPEDVAVVTPYN 626
Query: 572 AQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
AQ+ L L D + G+E+ ++D FQGRE +AVI+S+VRSN VGFL + RR+NVA
Sbjct: 627 AQLALLSSMLKD--KYPGLELGSVDGFQGREKEAVIVSLVRSNPEHEVGFLAEKRRLNVA 684
Query: 632 ITRACKHVAVVCDSSTI-CHNTFLARLLRHIRYFGRVKHAEPGSF 675
+TR +H+ + DS TI N FL R + + +++ + G +
Sbjct: 685 MTRPKRHLCICGDSETIRGGNQFLRRWMDFLEENADLRYPDAGEY 729
>gi|239049136|ref|NP_001155054.1| immunoglobulin mu binding protein 2 [Nasonia vitripennis]
Length = 905
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 202/626 (32%), Positives = 305/626 (48%), Gaps = 70/626 (11%)
Query: 81 STGLGGMHLVLFRVEGNHRLP-PTTLSPGDMV-CVRVCDSRGACATSCIQGFVHNLGEDG 138
S G G + L R +G LP L GD+V C+R S+ T I+ V+ +GE
Sbjct: 56 SKGPGRFQIDLERADG---LPLEHGLCNGDLVICIR---SKEKGQT--IRAIVNEIGE-- 105
Query: 139 CTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSI 198
T+S++ + + ++F V+ D TY+ AL L+K LH + +
Sbjct: 106 STLSISTNDDYENIREEEIFT-VVKTD------SDFTYKSQTRALSFLEKKELHS-SSCL 157
Query: 199 AAVVTLFG-DKEDVTWL-------EENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKK 250
V LF DKE V L +N L D + QK A+ L K+
Sbjct: 158 EIVRILFDTDKEIVQNLLTSEDPIPKNTLDDQGSI---NFYNPNLAKDQKSAVEFAL-KR 213
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R IIQGPPGTGKT L EII + + G++VL+ APTN AVDN+V +L +R+G
Sbjct: 214 RYFAIIQGPPGTGKTTTLIEIIVQLQKFGKKVLICAPTNVAVDNLVIRLGQTEAKPLRLG 273
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQL 370
+P RI+ SL ++ + F+ + KKS KDL + + +++ ++L
Sbjct: 274 HPTRIAKEALKYSLDSYLE-RDDGFIILKDIKKS--IKDLETNIGNSGTKYAYKEV-REL 329
Query: 371 GKTLKKKEKETVKEVLSSAQVVLAT-NTGAAD----PLIRRLDTFDLV------------ 413
K +K+ + L V+L T N+ +A+ I R D FD++
Sbjct: 330 KKEYRKRLIRLTCDTLKKCSVILCTLNSASANDGQLQYIPR-DHFDVLIVDEASQAMEAS 388
Query: 414 -------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
+ ILAGD QL PV++ ++A +GG+ +SL+ERA +L QYRM
Sbjct: 389 TWIAIPNAPKLILAGDINQLPPVVMCQEATKGGLNISLMERAIKKLNTDCYVRLMRQYRM 448
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW-ITQCPLLLLDTRLPYGSLSLG 525
N+ I +W+SK+ Y +L + V +HLL P VK +T ++ +DT
Sbjct: 449 NEKIMTWSSKKFYDDTLEADDLVKNHLLKHLPSVKQEDDLTSEAVVYIDT------CGCE 502
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
CEE S N GEA IV V +L+ G+ I +PY QV +R
Sbjct: 503 CEEFNTGVEKASKGNLGEAVIVDKVVTNLVKVGLYHKDIGAITPYALQVDFIRRSF--AA 560
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
++ VEV+T+D FQGRE + +I+S+VRSN +GF+ D RR+NVA+TRA + + V+ DS
Sbjct: 561 KSLNVEVSTVDGFQGREKEVIILSLVRSNEDKELGFVTDFRRLNVAVTRARRSLIVIADS 620
Query: 646 STICHNTFLARLLRHIRYFGRVKHAE 671
T+ + + LL+HI G ++ AE
Sbjct: 621 ETMEKDDLIVSLLKHIEDNGLLQTAE 646
>gi|358377729|gb|EHK15412.1| hypothetical protein TRIVIDRAFT_184819 [Trichoderma virens Gv29-8]
Length = 690
Score = 231 bits (590), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 203/661 (30%), Positives = 322/661 (48%), Gaps = 88/661 (13%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFR----VEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
I NL + S TGLGG ++ LP + GD+V V A S
Sbjct: 50 ITNLTISSQRTGLGGKTVLELSPNSATSSTGELPEHGIRTGDIVLVA-----EQPAGSAK 104
Query: 128 QGFVHNLGEDGC----------TISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYE 177
+ V L G ++VAL+ + F+ R+ ++ LAD +TY
Sbjct: 105 KREVKELERKGARGVVTKVQRAAVNVALDEGKDEVVFAG------RVWMVK-LADEVTYR 157
Query: 178 RNCEALMLLQKNGLHKRNPSIAAVVTLFGDK---EDVTWLEENDLADWSEVKLDGIMGKT 234
R + + LQK G + + I + L +D+T +E +W ++ T
Sbjct: 158 RMNQTMEKLQKMGEAEYSSFIRVLFGLSSPSPVPQDLTASDEVGNIEWIDL--------T 209
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+DSQK AI L R + +I GPPGTGKT L E+I + +++ +R+LV P+N +VDN
Sbjct: 210 LNDSQKDAIRFAL-ASREVALIHGPPGTGKTHTLIELILQMIKRDQRILVCGPSNISVDN 268
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+VE+LS + I+R+G+PAR+ P+V + SL + ++ A + + R + D ++ +
Sbjct: 269 IVERLSPHKIPILRLGHPARLLPSVLNHSLDVLTQTSEAGAIVKDVRAEMDAKQASIKKT 328
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
K I LK+L K +++E+ V ++ ++VVLAT GA +R + FD+V
Sbjct: 329 KSGKERKAIYTDLKELRKEYRERERRCVSNLVGGSKVVLATLHGAGGFQLRN-EQFDVVI 387
Query: 414 ------------------GKRCILAGDQCQLAPVILS-----RKALEGG----------- 439
K+ + AGD QL P I S + +GG
Sbjct: 388 IDEASQALEAQCWVPLLSAKKAVCAGDHLQLPPTIKSLNSKVKVKSKGGDENAAPVIRGM 447
Query: 440 -IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+ +L +R LH + LTTQYRM++ I + S E+Y LI++ V + LL D
Sbjct: 448 TLETTLFDRLLALHGPSIKRMLTTQYRMHEKIMRFPSDELYDSELIAADAVKARLLKDLE 507
Query: 499 F-VKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFY-----NEGEAEIVVHHV 551
+ V+ T P++ +DT+ G E + + GS + NE EA +V HV
Sbjct: 508 YDVENNEDTTEPVIFIDTQ--GGDFPERNEDDDKENPKKGSLHGESKSNEMEAALVRLHV 565
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
L+ AGV P IAV +PY AQ+ L + P G+E+ ++D FQGRE +AVI+S+V
Sbjct: 566 KQLVEAGVRPEDIAVVTPYNAQLAALASLKEKFP---GIELGSVDGFQGREKEAVIVSLV 622
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHA 670
RSN G VGFLG+ RR+NVA+TR + + V+ DS T+ + FL + + + +++
Sbjct: 623 RSNPDGEVGFLGEKRRLNVAMTRPKRSLTVIGDSETVKRGSKFLKKWMEFLEENADLRYP 682
Query: 671 E 671
+
Sbjct: 683 D 683
>gi|325088278|gb|EGC41588.1| helicase [Ajellomyces capsulatus H88]
Length = 732
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 171/525 (32%), Positives = 264/525 (50%), Gaps = 86/525 (16%)
Query: 221 DWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE 280
D S + + T +DSQ++AI L K + +I GPPGTGKT L E+I + ++Q
Sbjct: 221 DLSSIGTIEFIDPTLNDSQREAIRFALAAKE-IALIHGPPGTGKTYTLIELILQFLRQNL 279
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA--- 337
R+LV P+N +VDN+VE+L+ + +VR+G+PAR+ V SL ++++ A+ +
Sbjct: 280 RILVCGPSNVSVDNIVERLAPHKVPLVRIGHPARLLSTVLDHSLEVLIQTSDAAAIVKDI 339
Query: 338 --EFERKKSDLRK-----DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQ 390
E E K++ +RK + R+ +D LK+L K +++E + V +++ +
Sbjct: 340 RKEIEVKQASIRKTRSGRERREIYRD----------LKELRKEFRERESKCVGNLVTDCK 389
Query: 391 VVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVIL 431
VVLAT GA +R FD+V + ILAGD QL P +
Sbjct: 390 VVLATLHGAGGHQLRN-QKFDVVIIDEASQALEAQCWVPLLSASKAILAGDHLQLPPTVK 448
Query: 432 S--------------------------------RKALEGGIGVSLLERAATLHEGVLATK 459
S KA G + ++L +R +LH +
Sbjct: 449 SATLKFSGAVGNGKSPDDEQSVLRMDKDNNVGQHKAKGGTLEMTLFDRLLSLHGPAIKRM 508
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLP 518
LTTQYRM++ I + S+E+Y LI++ V LL D P+ V+ T T+ PL+ DT+
Sbjct: 509 LTTQYRMHEKIMQFPSQELYESKLIAADAVKLRLLKDLPYEVEETDDTREPLVFYDTQ-- 566
Query: 519 YGSLSLGCEEHLDLAGTG-------SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
G EE + S N+ EA +V HV +LI AGV P +AV +PY
Sbjct: 567 GGDFPEKVEEPAVMPKQKQISLFAESKSNDMEAYLVARHVENLIGAGVKPEDVAVVTPYN 626
Query: 572 AQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
AQ+ L L D + G+E+ ++D FQGRE +AVI+S+VRSN VGFL + RR+NVA
Sbjct: 627 AQLALLSSMLKD--KYPGLELESVDGFQGREKEAVIVSLVRSNPEHEVGFLAEKRRLNVA 684
Query: 632 ITRACKHVAVVCDSSTI-CHNTFLARLLRHIRYFGRVKHAEPGSF 675
+TR +H+ + DS TI N FL R + + +++ + G +
Sbjct: 685 MTRPKRHLCICGDSETIRGGNQFLRRWMDFLEENADLRYPDAGEY 729
>gi|322701017|gb|EFY92768.1| DNA-binding protein SMUBP-2 [Metarhizium acridum CQMa 102]
Length = 724
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 199/619 (32%), Positives = 303/619 (48%), Gaps = 90/619 (14%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG----NHRLPPTTLSPGDMVCV-------------R 114
I NL V S TGLGG ++ + LP + GD+V V R
Sbjct: 123 ITNLVVFSQRTGLGGKTVLELGPDSATSTTGELPEHGIRTGDIVLVAEQPAGSAKKREVR 182
Query: 115 VCDSRGA--CATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLAD 172
+ +G+ T +GFVH +DG V+L R + LAD
Sbjct: 183 DLERKGSRGVVTKVQRGFVHVALDDGKD-EVSLPGRVW----------------LVKLAD 225
Query: 173 TLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMG 232
+TY+R + + LQ G+ + S + + LFG + DL+ S++ +
Sbjct: 226 EVTYKRMNQTMEKLQ--GMVEAEYS-SLMRVLFGLSSPSPLPQ--DLSKDSQLGHLEWID 280
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
T +DSQK AI L R + +I GPPGTGKT L E+I + V++ +R+LV P+N +V
Sbjct: 281 PTLNDSQKDAIRFAL-ASREIALIHGPPGTGKTHTLIELILQMVKRKQRILVCGPSNISV 339
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN+VE+LS L I+R+G+PAR+ P+V SL + + A + + R + D ++ +
Sbjct: 340 DNIVERLSPHKLPILRLGHPARLLPSVLHHSLDVLTNTSEAGAIVKDVRAEMDSKQASVK 399
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
K I LKQL K +++E++ V ++ ++VVLAT G+ +R + FD+
Sbjct: 400 KTKSGKERREIYSDLKQLRKEYRERERKCVSNLIGGSKVVLATLHGSGGFQLRN-EEFDV 458
Query: 413 V-------------------GKRCILAGDQCQLAPVI--LSRKA-----------LEG-G 439
V ++ + AGD QL P I L+ KA + G
Sbjct: 459 VIIDEASQALEAQCWVPLLSARKAVCAGDHLQLPPTIKSLNSKANPRPKDESLPVITGMT 518
Query: 440 IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+ +L +R LH + LTTQYRM++ I + S+E+YG L+++ V + LL D +
Sbjct: 519 LETTLFDRVLALHGPSIKRMLTTQYRMHEEIMRFPSEELYGSKLVAADAVKARLLKDLEY 578
Query: 500 -VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD---LAGTGSFY-----NEGEAEIVVHH 550
V+ T PL+ +DT+ G EE G GS + NE EA +V+ H
Sbjct: 579 GVQDNEDTSAPLIFIDTQ--GGDFPEQNEEDDKDNPKKGKGSLHSESKSNEMEAALVMQH 636
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
L+ AGV P IA+ +PY AQ+ L + P G+E+ ++D FQGRE +AVI+S+
Sbjct: 637 AGRLVGAGVRPEDIAIVTPYNAQLGVLAPLKERFP---GIELGSVDGFQGREKEAVIVSL 693
Query: 611 VRSNTLGAVGFLGDSRRMN 629
VRSN G VGFLG+ RR+N
Sbjct: 694 VRSNPDGEVGFLGEKRRLN 712
>gi|354546507|emb|CCE43239.1| hypothetical protein CPAR2_208840 [Candida parapsilosis]
Length = 672
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 197/652 (30%), Positives = 318/652 (48%), Gaps = 90/652 (13%)
Query: 46 DENSDSSKPIEFLVSHGRAPQELCD---TICNLFVVSTSTGLGGMHLVLFRVEG---NHR 99
++ D ++ E++ ++ +P++L + NL + + TG+GG ++ +++ N
Sbjct: 14 EQEEDVAQTTEYINAY--SPKKLASMGLAVINLNITNMRTGIGGKTILEMQLDNAVSNGD 71
Query: 100 LPPTTLSPGDMVCV-------RVCDSRGACATSC---IQGFVHNLGEDGCTISVALESRH 149
L ++ GD+V + R + C I V + TI+++++
Sbjct: 72 LSSVSMKTGDIVRIAKMTKAERKKAKKEEETQDCDESIDAVVVKVSNQ--TITLSVDEST 129
Query: 150 GDPTFSKLFGKSVRIDR--IQGLADTLTYERNCEALMLL------QKNGLHKRNPSIAAV 201
D + + R I LA+++TY+R + + +KN +HK
Sbjct: 130 SDDKILNYYNNTNDSSRFWIVKLANSITYKRMITTMNKVLELKESEKNDIHK-------- 181
Query: 202 VTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPG 261
L G+ + N L+ S + + SQK AI +NK + II GPPG
Sbjct: 182 -LLLGETK------HNLLSGNSTINF---FNSGLNQSQKSAIDFAINKSN-ISIIFGPPG 230
Query: 262 TGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD--VGLNIVRVGNPARISPAV 319
TGKT L E+I + +GE+VLV P+N +VD ++E+L ++R+G+PAR+ P
Sbjct: 231 TGKTMTLVELIRQLTLRGEKVLVCGPSNISVDTILERLGSHYKAGELIRIGHPARLLPVN 290
Query: 320 ASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEK 379
SL + KS + + E + +++C K + + Q LKQL K L ++E+
Sbjct: 291 LQHSLEVLSKSFGREVIKDLENDIQSVLNKIKKC-KRYTERKALYQELKQLKKELVQRER 349
Query: 380 ETVKEVLSSAQVVLATNTGAADPLIRRLD-TFDLV----------------------GKR 416
+ V E+L+ AQVVLAT GA ++R +FD + KR
Sbjct: 350 KIVHELLNGAQVVLATLHGAGSFDLKRSGVSFDTIIIDEVSQSLEPQCWIPLLHNDKFKR 409
Query: 417 CILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWAS 475
++AGD QL P I+S A + +L +R EG KL QYRMND+I + S
Sbjct: 410 LVIAGDNMQLPPTIISGNA--SLLETTLFDRLVKEVEGNKYKKLLNVQYRMNDSIMKFPS 467
Query: 476 KEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDL 532
++Y LIS ++V + L D P V+ T + DT+ P E+ L+
Sbjct: 468 MQLYEDKLISDASVKNIKLTDLPDVESNDETSIQCVWYDTQGGDFP--------EQKLES 519
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEV 592
S YNE E +IV H+ L+ +GV P I V +PY AQVQ L+++L PE+ +EV
Sbjct: 520 IKGDSKYNEMELQIVKSHIRRLVDSGVLPQDIGVIAPYAAQVQLLKKQLG--PESL-IEV 576
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
+T+D FQGRE + +I+++VRSN VGFL + RR+NVAITR + + V+ D
Sbjct: 577 STVDGFQGREKEVIILTLVRSNDERDVGFLSEERRLNVAITRPKRQLCVIGD 628
>gi|115433256|ref|XP_001216765.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189617|gb|EAU31317.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 701
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 168/488 (34%), Positives = 262/488 (53%), Gaps = 55/488 (11%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+T +DSQK+AI L + +I GPPGTGKT L E+I + V++G+RVLV P+N +V
Sbjct: 223 ETLNDSQKEAIRFALAAPD-VALIHGPPGTGKTHTLIELIVQLVRRGQRVLVCGPSNISV 281
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVK-SKLASFVAEFERKKSDLRKDLR 351
DN+VE+L+ +++VR+G+PAR+ P+V SL + + S+ A+ V + R+ + +R
Sbjct: 282 DNIVERLAPKEVSVVRIGHPARLLPSVLDHSLEVLTQTSEAAAIVRDVRREMDEKHASIR 341
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ A I Q +K+L + +++E V ++ + VVLAT GA +R FD
Sbjct: 342 KTRFGREKRA-IYQDIKELRREFREREARCVDNLVRGSSVVLATLHGAGGHQLRN-QKFD 399
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRK--------ALEGGIGV-- 442
+V + +LAGD QL P + S+ A EG V
Sbjct: 400 VVVIDEASQALEAQCWIPLLTAPKVVLAGDHLQLPPTVKSKAGDAPPQDGAAEGDADVVR 459
Query: 443 ------SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
++ +R +H + LTTQYRM++ I + S E+Y G L+++ V + LL D
Sbjct: 460 GISLETTMFDRLLAMHGPAIKRMLTTQYRMHERIMRFPSDELYEGRLMAADAVKARLLKD 519
Query: 497 TPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVF 552
P+ V+ T T+ P++ DT+ P + + L G S NE EA +V HV
Sbjct: 520 LPYEVQETDDTREPVVFWDTQGGDFPEKTEDNEVGQKEALLGE-SKSNEMEALVVGKHVD 578
Query: 553 SLICAGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVATIDSFQGREADAVII 608
+L+ AGV P IAV +PY Q+ Q LRE+ G+E+ ++D FQGRE +AV++
Sbjct: 579 ALVQAGVRPEDIAVITPYNGQLAVLSQMLREKY------PGLELGSVDGFQGREKEAVVV 632
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRV 667
S+VRSN+ VGFLG+ RR+NVA+TR +H+ V DS TI + FL R + + +
Sbjct: 633 SLVRSNSKHEVGFLGERRRLNVAMTRPKRHLCVCGDSETISRGSGFLKRWMEFLEEHADL 692
Query: 668 KHAEPGSF 675
++ + G
Sbjct: 693 RYPDAGEL 700
>gi|452987618|gb|EME87373.1| hypothetical protein MYCFIDRAFT_26275 [Pseudocercospora fijiensis
CIRAD86]
Length = 694
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 226/745 (30%), Positives = 347/745 (46%), Gaps = 140/745 (18%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDT---I 72
F LL ERDAE+ TQ L++ AP L +
Sbjct: 9 FAASQLSLLDNERDAEVAETQ---------------------LLTSTHAPTTLQRAGLAL 47
Query: 73 CNLFVVSTSTGLGGMHLVLFR----VEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
NL V S TG GG L+ + + LP L GD +C +GA +
Sbjct: 48 LNLAVSSQRTGFGGKTLLELSLDPAISSSPELPEHGLRVGD-ICAVAEQPKGAEKKKERE 106
Query: 129 GFVHNLGEDGC----------TISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYER 178
NL + G TI+VAL+ D KL+ + LA+ +TY+R
Sbjct: 107 ----NLEKKGVEGVVTKTHTTTITVALDKEDADLPTGKLW--------LVKLANDVTYKR 154
Query: 179 NCEALMLLQKNGLHKRNPSIAAVVT--LFGDKEDVTWLEENDLA---DWSEVKLDGIMGK 233
+ + LQK PS + +T LFG + T + ++DL WS+
Sbjct: 155 LNQTMSRLQK-----MQPSEHSTLTQVLFG-RSSPTAVSDSDLKAEIQWSD--------P 200
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +DSQK+AI L + +++I GPPGTGKT L E+I + ++Q R+LV P+N +VD
Sbjct: 201 TLNDSQKEAIQFALASQE-VVLIHGPPGTGKTHTLIELILQLLKQKLRLLVCGPSNISVD 259
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV-----AEFERKKSDLRK 348
N++E+L+ +++VR+G+PAR+ P+V + S+ + + A+ + +E + K++ +RK
Sbjct: 260 NIIERLAPHKVSMVRLGHPARLLPSVINHSMEVLTNTSDAAAIVTDIRSEMDSKQASIRK 319
Query: 349 DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD 408
++ I LK L K +++E V+E+L +QVVL+T G+ ++ +
Sbjct: 320 -----TRNGRERKAIYGELKDLRKEYREREGRVVRELLQQSQVVLSTLHGSGGFQLKDQE 374
Query: 409 TFDLV---------------------GKRCILAGDQCQLAPVILSR------KAL----- 436
FD+V + +LAGD QL P I S KAL
Sbjct: 375 -FDVVIVDEASQALEAQCWIPVLTSGASKLVLAGDHLQLPPTIKSSNSKDTTKALAKASL 433
Query: 437 -----EGG----------IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGG 481
GG + +L +R LH + LTTQYRM++ I + S +YG
Sbjct: 434 TDQKSTGGAAKAKDDDVHLETTLFDRLLKLHGNKIKRMLTTQYRMHEKIMQFPSHALYGD 493
Query: 482 SLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFY- 539
LI++ V S LL D P+ V T PL+ DT+ G E + G S
Sbjct: 494 KLIAADAVKSRLLKDLPYGVAGNDNTIEPLIFFDTQ--GGDFPEKTEAEDTVKGKSSLLA 551
Query: 540 ----NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATI 595
NE EA IV H+ +L+ +GV IAV +PY Q+ L + L + + G+E+ ++
Sbjct: 552 ESKVNEAEALIVREHIINLVNSGVKADDIAVVTPYNGQLALLSQMLKE--QVPGLELGSV 609
Query: 596 DSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FL 654
D FQGRE +AVI+S+VRSN VGFL + RR+NVA+TR + + V+ DS TI + FL
Sbjct: 610 DGFQGREKEAVIVSLVRSNAEHEVGFLSEKRRLNVAMTRPKRQLCVIGDSETISSGSKFL 669
Query: 655 ARLLRHIRYFGRVKHAEPGSFGGSG 679
+ H+ +++ F +G
Sbjct: 670 KSWMAHLEENADLRYPNLSDFSQAG 694
>gi|395218587|ref|ZP_10402229.1| ATPase AAA [Pontibacter sp. BAB1700]
gi|394454278|gb|EJF08968.1| ATPase AAA [Pontibacter sp. BAB1700]
Length = 645
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 161/496 (32%), Positives = 257/496 (51%), Gaps = 70/496 (14%)
Query: 220 ADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
A +++ KL+ I + ++SQ +A+ + + R + II GPPGTGKT L + I ++
Sbjct: 167 ATFTDEKLEEI--QVLNESQNEAVQ-KIAQARDVAIIHGPPGTGKTTTLVQAILHTLKSQ 223
Query: 280 ERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAV-------------ASKSLGE 326
+R+LVTAP+N AVD + EKL++ G+N++R+GNP+R+S + A K L
Sbjct: 224 KRLLVTAPSNTAVDLLTEKLANEGVNVIRIGNPSRVSDVLLEHTLDAQVMAHRAYKDLKN 283
Query: 327 IVKS--KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE 384
+ K+ + +F+RK + RQ K +S +LL + E +
Sbjct: 284 LRKTAEEYKRMAYQFKRKFGHQERAQRQLYKSES-----HRLLDEADNV----EHYITDD 334
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
+L + QV+ T GAA+ IR L T+D V R +LAGD CQ
Sbjct: 335 LLDNVQVITCTLVGAANKAIRHL-TYDTVFIDEAAQALEPACWIPISRTNRVVLAGDHCQ 393
Query: 426 LAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLIS 485
L P I S A +GG+ V+L E+ V + L TQYRM+ I +++++ YGG L++
Sbjct: 394 LPPTIKSLVADKGGLSVTLFEKCINRQPEV-SVMLKTQYRMHHHIMQFSNQQFYGGELVA 452
Query: 486 SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC-EEHLDLAGTGSFYNEGEA 544
+V S L + + + +DT GC ++ T S N E
Sbjct: 453 HESVHSAELHGYSTI---FAPDMAVEFIDT--------AGCGYNEAEMPETQSSANPEEG 501
Query: 545 EIVVHHVFSLIC----AGVSPSAIAVQSPYVAQVQHLRE------RLDDLPEAAGVEVAT 594
+++++H+ +L+ V+P I V +PY AQ+ +L++ RL +L + + + T
Sbjct: 502 DLLINHLSNLLKDYDEEEVAPLKIGVIAPYRAQINYLQDKVEHTPRLHELHQKRQLSIGT 561
Query: 595 IDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFL 654
+DSFQG+E D + +S+VRSN G +GFL D RRMNVA+TRA + + +V DSST+ N F
Sbjct: 562 VDSFQGQERDIICMSLVRSNERGEIGFLADERRMNVAMTRARRKLIIVGDSSTLSTNPFF 621
Query: 655 ARLLRHIRYFGRVKHA 670
A L+ ++ G K A
Sbjct: 622 AELIAYVESIGAYKSA 637
>gi|444510151|gb|ELV09486.1| DNA-binding protein SMUBP-2 [Tupaia chinensis]
Length = 882
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 148/344 (43%), Positives = 195/344 (56%), Gaps = 33/344 (9%)
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRLD 408
++Q LKD R +K L K LK++E+ + E+L+SA+VVLATNTGA AD ++ L
Sbjct: 163 VKQGLKDKKEKGNFRNEIKLLRKELKEREEAAMLEILTSAKVVLATNTGASADGPLKLLP 222
Query: 409 T--FDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
FDLV ++CILAGD QL P I+S +A G+ +SL+E
Sbjct: 223 EGYFDLVIIDECAQALEASCWIPLLQARKCILAGDHKQLPPTIVSHRAALAGLSLSLMEH 282
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
+ LTTQYRM+ AI WAS+ MY G L + +VA HLL D P V T T
Sbjct: 283 LVEEYGAKAVRMLTTQYRMHQAIMQWASEAMYHGQLTAHPSVAGHLLRDLPGVATTEETG 342
Query: 508 CPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAV 566
PLLL+DT GC L+ S N GE +V H+ +L+ AGV S IAV
Sbjct: 343 IPLLLVDT--------AGCGLFELEQEDDQSKGNPGEVRLVGLHIQALVDAGVQASDIAV 394
Query: 567 QSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
+PY QV LR+ L P +E+ ++D FQGRE +AVI+S VRSN G VGFL + R
Sbjct: 395 ITPYNLQVDLLRQSLS--PRHPQLEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDR 452
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
R+NVAITRA +HVAVVCDS T+ ++ FL L+ + G V+ A
Sbjct: 453 RINVAITRARRHVAVVCDSHTVNNHAFLKTLVDYFTEHGEVRTA 496
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
+ D SQK+A++ L++K L II GPPGTGKT + EII +AV+QG
Sbjct: 122 SLDASQKEAVSFALSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQG 166
>gi|15607027|ref|NP_214409.1| DNA helicase [Aquifex aeolicus VF5]
gi|2984278|gb|AAC07803.1| DNA helicase [Aquifex aeolicus VF5]
Length = 530
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 160/484 (33%), Positives = 240/484 (49%), Gaps = 68/484 (14%)
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
QKKA+ L K + +I GPPGTGKT L E I R Q+G +VL TA +N AVDN+VE+
Sbjct: 53 QKKAVERAL-KAEKVFLIHGPPGTGKTTTLVECIKRLAQEGYKVLATADSNVAVDNLVER 111
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVK-----SKLASFVAEFERKKSDLRKDLR-- 351
L + +VRVGNP R+ + +L +V+ K E + K + +K ++
Sbjct: 112 LVRENVKVVRVGNPVRVLKTIQRHTLDYLVQFEPEFDKARKIYEEIDNLKEEQKKYVKPE 171
Query: 352 ----------QCLKDDSLAAGIR----QLLKQLGKTLKKKEK-------------ETVKE 384
+ LK +R ++L+ + K +K +EK + V +
Sbjct: 172 PRYRRGLSDEEILKRAKTGTPVRGLSPKILRSMAKWIKLQEKVKELYEKAKKEEEKAVNK 231
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
+LS AQVV TN+ A +++ L+ FD+V GK+ I+AGD Q
Sbjct: 232 ILSRAQVVCTTNSTAGSEVLQNLN-FDVVIIDEATQATEPSCLIPLIKGKKLIMAGDHKQ 290
Query: 426 LAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLIS 485
L P +LS++A E + +L ER L+ + L QYRMN I +++K Y G LI+
Sbjct: 291 LPPTVLSQEAQE-ALSYTLFERLLDLYGEEIYEILRIQYRMNKKIMEFSNKMFYEGKLIA 349
Query: 486 SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL----GCEEHLDLAGTGSFYNE 541
+V +H + D + P + + P P + G E+ G+ SFYNE
Sbjct: 350 DKSVENHTIKD--LINPEKLKEIPEPFKSVLEPEKVVVFINVRGKEKQ--RRGSTSFYNE 405
Query: 542 GEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGR 601
EA++ V V L+ G+ I V SPY QV L E L D VEV T+D FQGR
Sbjct: 406 EEAKVAVKIVEYLMKIGLRSEHIGVISPYEDQVNFLEELLKDFE----VEVKTVDGFQGR 461
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
E + +IIS VRSN G +GFL D RR+NVA+TRA + + + + T+ + + + ++
Sbjct: 462 EKEVIIISFVRSNEKGEIGFLKDYRRLNVALTRARRKLITLGNEKTLSSDEVYKQFIGYV 521
Query: 662 RYFG 665
+ G
Sbjct: 522 KSIG 525
>gi|344304991|gb|EGW35223.1| hypothetical protein SPAPADRAFT_53535 [Spathaspora passalidarum
NRRL Y-27907]
Length = 685
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 195/656 (29%), Positives = 311/656 (47%), Gaps = 80/656 (12%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE---GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
I NL +++ TGLG ++ +++ G+ + TL GD+V + + + +
Sbjct: 41 IINLQIINLRTGLGAKTIIELKLDPAFGDTDINTGTLRTGDIVKLSKMEKSTSTNAKKKK 100
Query: 129 GFVHNLGEDG-----------------CTISVALESRHGDPTFSKLFGK----SVRIDRI 167
E+ TIS+++E D + + S R+ +
Sbjct: 101 TKSTTSTENSEDSEDQGIEAVVLKVSTQTISISVEESTDDAHVLQYYNNTNNDSTRMWLV 160
Query: 168 QGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDV--TWLEENDLADWSEV 225
+ LA+++TY+R M+ N +++ PS DK D+ L E+
Sbjct: 161 K-LANSITYKR-----MISTMNKVNELQPS---------DKNDIHKLLLGESSYISHQNN 205
Query: 226 KLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285
+DSQK+AI +NK + II GPPGTGKT L E+I + GE+VLV
Sbjct: 206 HFITFFNSHLNDSQKQAIEFAINKSN-ITIIHGPPGTGKTYTLIELIQQLTNLGEKVLVC 264
Query: 286 APTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKK 343
P+N +VD ++E+L D + ++R+G+PAR+ P SL + KS +++ E
Sbjct: 265 GPSNISVDTILERLGDKYKSGQLIRIGHPARLLPVNLQHSLEILSKSYGREIISDIEHDI 324
Query: 344 SDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPL 403
S +R+C K + + Q LK L + LK++EK+ V E+L +A+VV+AT G+
Sbjct: 325 SSTLTKIRKC-KRYAERRELYQELKLLKRELKQREKKIVHELLINARVVVATLHGSGSYE 383
Query: 404 IRRLD-TFDLV----------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
+R D FD + KR ++AGD QL P + S K I
Sbjct: 384 LRTNDLAFDTIIIDEVSQSMEPQCWIPLLLNTKFKRLVIAGDNMQLPPTVKSVKRKGSSI 443
Query: 441 -GVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+L +R EG KL QYRMN +I + + ++Y L S S+V + L + P
Sbjct: 444 LETTLFDRLVLKGEGNKFKKLLDVQYRMNTSIMMFPNMQLYSNKLKSDSSVENITLSELP 503
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG 558
V+ T C + DT+ G E ++ S YNE E +V H+ L+ G
Sbjct: 504 GVEENDDTLCKCIWYDTQ--GGEFPEQVSESVE---GDSKYNEMELLVVRGHIEKLLSDG 558
Query: 559 VSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA 618
V P I V +PY AQVQ L++++ PE +E++T+D FQGRE + +I+++VRSN
Sbjct: 559 VQPKDIGVIAPYAAQVQLLKKQMG--PETE-IEISTVDGFQGREKEVIILTLVRSNESRE 615
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICH--NTFLARLLRHIRYFGRVKHAEP 672
+GFL D RR+NVAITR + + V+ D + + FL +++ K EP
Sbjct: 616 IGFLSDQRRLNVAITRPKRQLCVIGDLELMSSSGSIFLKNWCKYVEEGIDCKDVEP 671
>gi|189208013|ref|XP_001940340.1| DNA-binding protein SMUBP-2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976433|gb|EDU43059.1| DNA-binding protein SMUBP-2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 715
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 205/660 (31%), Positives = 316/660 (47%), Gaps = 102/660 (15%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG-------NHRLPPTTLSPGDMVCVRVCDSRGACAT 124
I NL V S TGLGG +V ++ +P + GD+V V+ D A
Sbjct: 48 ILNLNVSSIRTGLGGKTVVELGLDSAVVAKGEKPDIPEHGIRVGDIVAVQ--DQPSGSAK 105
Query: 125 SCIQGFVHNLGEDGC-------TISVALESRHGD-PTFSKLFGKSVRIDRIQGLADTLTY 176
+ + G G + + L+ D PT KL+ + + R+Q L D
Sbjct: 106 KTEKKELEKKGASGVVLKVRRENVEIVLDKEDADVPTGGKLWMMNQTMSRLQKLGD---- 161
Query: 177 ERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFD 236
++ M + L + + L + LE ND + +
Sbjct: 162 -QDYTPFMRV----LFGQTSPTPLPLDLNDPSNPLHNLEWND--------------PSLN 202
Query: 237 DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMV 296
DSQ++AI L R + +I GPPGTGKT L E+I + ++Q R+LV P+N +VDN+V
Sbjct: 203 DSQQEAIRFAL-ASREVALIHGPPGTGKTHTLIELILQLLKQKLRLLVCGPSNISVDNIV 261
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKD 356
E+L+ + +VR+G+PAR+ P+V + SL + ++ A+ + + RK+ D D + ++
Sbjct: 262 ERLASHKVPMVRLGHPARLLPSVLNHSLDVLTRTSEAAALVQDVRKEMD---DKQSSIRK 318
Query: 357 DSLAAGIRQL---LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
A RQ+ LK+L + +++EK V ++S ++VVLAT GA ++ + FD+V
Sbjct: 319 TRNAKERRQIYTELKELRQEFREREKGCVNNLVSGSKVVLATLHGAGGFHLKGQE-FDVV 377
Query: 414 ---------------------GKRCILAGDQCQLAPVILS-------------------- 432
+ +LAGD QL P I S
Sbjct: 378 IIDEASQALEAQCWVPLLWVKASKLVLAGDHLQLPPTIKSLNSKESKAAKKDAKKSTDKT 437
Query: 433 ----RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSST 488
+ A+ + +L +R LH + LTTQYRM++ I + S E+Y LI++
Sbjct: 438 GDAEKPAINTTLETTLFDRLLALHGPSIKRMLTTQYRMHEKIMRFPSDELYDSKLIAAEF 497
Query: 489 VASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG-----SFYNEG 542
V LL D P+ V+ T T+ PL+ DT+ + E + G G S NE
Sbjct: 498 VKERLLKDLPYEVEDTEDTREPLVFWDTQGGDFPEKIEDEGVIGKGGKGMNLGDSKSNEA 557
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGRE 602
EA +V HV +LI AGV IAV +PY AQ+ L L + G+E+ ++D FQGRE
Sbjct: 558 EAALVKMHVSNLISAGVKAEDIAVVTPYNAQLALLGGMLKE--AYPGIELGSVDGFQGRE 615
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHI 661
+AVI+S VRSN+ VGFLG+ RR+NVA+TR +H+ V+ DS TI T FL ++H+
Sbjct: 616 KEAVIVSTVRSNSEHEVGFLGEKRRLNVAMTRPKRHLCVIGDSDTISKGTKFLKDWMQHL 675
>gi|359689939|ref|ZP_09259940.1| DNA and RNA helicase [Leptospira licerasiae serovar Varillal str.
MMD0835]
gi|418748881|ref|ZP_13305173.1| AAA domain protein [Leptospira licerasiae str. MMD4847]
gi|418757762|ref|ZP_13313949.1| hypothetical protein LEP1GSC185_3128 [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384115539|gb|EIE01797.1| hypothetical protein LEP1GSC185_3128 [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404275950|gb|EJZ43264.1| AAA domain protein [Leptospira licerasiae str. MMD4847]
Length = 627
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 164/478 (34%), Positives = 254/478 (53%), Gaps = 65/478 (13%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ +T +DSQKKA++ L + +++ GPPGTGKT + E I +G+R+L +APTN+
Sbjct: 172 LPETLNDSQKKAVSAILQTED-FVLVHGPPGTGKTKTIVEAIRILASEGKRILASAPTNS 230
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKK-----SD 345
A D +VE L + + ++R+G+PAR++P + SL + S + E +RK+
Sbjct: 231 ASDLLVESLEKLKVPVLRIGHPARMNPDILQNSLEMKLNHSPESKLIERDRKEVQELLKK 290
Query: 346 LRKDLRQCLKDDSLAAGIRQLLKQ---LGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
RK R K++ A R L K+ L K++K+++K V+ +L S V++ T+TGA+
Sbjct: 291 ARKYKRSFGKEE--AEERRSLYKEADSLRKSIKERQKVLVRYLLESHPVIVCTHTGASSY 348
Query: 403 LIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVS 443
L+ LD FD L + ++AGD QL P ++S L + VS
Sbjct: 349 LLHNLD-FDYAILDEGSQAIEPSSWIPILKANKFVIAGDPFQLPPTVISEDPL---LKVS 404
Query: 444 LLERA-ATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
L+ER + L TQYRM D I ++ + + Y L S + + L TPF
Sbjct: 405 LMERLLPAFQDKERVFLLDTQYRMTDPIQTFPNLKFYENKL--KSGLETDLREKTPF--- 459
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHVFSL 554
D+ P+GS + LD +GT GS N EAE V+ V +
Sbjct: 460 -----------DSGEPFGSSLV----FLDSSGTDTAEENSEGSLGNPWEAEFTVNIVKRI 504
Query: 555 ICAGVSPSAIAVQSPYVAQVQHLRERLDD-LPE-AAGVEVATIDSFQGREADAVIISMVR 612
+ +G P + + SPY Q LR++L++ LPE ++ +EV T+DSFQGRE+DAV+ S+VR
Sbjct: 505 LDSGWDPKGLILLSPYRYQRYLLRQKLEEILPEHSSQLEVETVDSFQGRESDAVVFSLVR 564
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
SN+ G +GFL ++RR NV +TRA K + +V D ST+ N F LL + G ++ A
Sbjct: 565 SNSEGQIGFLSETRRWNVGMTRAKKLLVMVGDGSTLGQNDFFKDLLETVELAGELRTA 622
>gi|116180746|ref|XP_001220222.1| hypothetical protein CHGG_01001 [Chaetomium globosum CBS 148.51]
gi|88185298|gb|EAQ92766.1| hypothetical protein CHGG_01001 [Chaetomium globosum CBS 148.51]
Length = 615
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 189/544 (34%), Positives = 280/544 (51%), Gaps = 85/544 (15%)
Query: 167 IQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKE------DVTWLEENDLA 220
I +AD +T+ R + L K + +R S A V LFG D+T EE
Sbjct: 63 IVKVADDVTFRRMNATMERLAK--MEEREYS-AFVRVLFGLSSPSPVAADLTRDEEVGEI 119
Query: 221 DWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE 280
+W + T +DSQK AI L R + +I GPPGTGKT L E+I + +++
Sbjct: 120 EW--------VDPTLNDSQKDAIRFAL-ASREIGLIHGPPGTGKTHTLIELILQLLKRNL 170
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV---- 336
RVLV P+N +VDN+VE+L+ + ++R+G+PAR+ P+V + SL + ++ A +
Sbjct: 171 RVLVCGPSNISVDNIVERLAPHKIPLIRLGHPARLLPSVLNHSLDVLTRTSEAGAIVKDV 230
Query: 337 -AEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT 395
AE + K++ +RK R + ++ A LK L K +++E+ V +++ ++VVLAT
Sbjct: 231 RAEMDAKQASIRK-TRNARERRAIYAD----LKDLRKEYRERERRCVSSLVAGSKVVLAT 285
Query: 396 NTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILS---- 432
GA +R + FD+V + I AGD QL P I S
Sbjct: 286 LHGAGGFQLRG-EQFDVVVIDEASQALEAQCWVPLLAASKAICAGDHLQLPPTIKSLNLK 344
Query: 433 --------RKALEGGIGV--------SLLERAATLHEGVLATKLTTQYRMNDAIASWASK 476
+ A +G GV +L +R LH + LTTQYRM++ I + S
Sbjct: 345 KKGSSKKGKDATDGEEGVVKGATLETTLFDRLLKLHGPSIKRMLTTQYRMHEKIMRFPSD 404
Query: 477 EMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG- 534
E+Y LI++ V + LL D P+ V T T PL+ +DT+ G E+ D +G
Sbjct: 405 ELYERKLIAADAVKARLLKDLPYEVDDTDDTTEPLIFIDTQ--GGDFPEKNEDDQDASGG 462
Query: 535 -----TGSFY-----NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
S Y NE EA +V HV SL+ AGV P IAV +PY AQ+ L +
Sbjct: 463 SKKLTKSSLYGDSKSNEMEAALVRQHVQSLVDAGVKPEDIAVVTPYNAQLAVLAPLKEAF 522
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
P G+E+ ++D FQGRE +AVI+S+VRSN G VGFLG+ RR+NVA+TR + + V+ D
Sbjct: 523 P---GIELGSVDGFQGREKEAVIVSLVRSNPDGEVGFLGEKRRLNVAMTRPKRSLTVIGD 579
Query: 645 SSTI 648
S T+
Sbjct: 580 SETV 583
>gi|406603293|emb|CCH45172.1| DNA-binding protein SMUBP-2 [Wickerhamomyces ciferrii]
Length = 681
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 247/457 (54%), Gaps = 51/457 (11%)
Query: 233 KTFDD----SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
K F+D SQK AI LN P+ II GPPGTGKT L E+I + V +GERVLV P+
Sbjct: 206 KFFNDGLNQSQKNAINFSLNS--PISIIHGPPGTGKTYTLIELILQLVSKGERVLVCGPS 263
Query: 289 NAAVDNMVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVK-SKLASFVAEFERKKSD 345
N +VD ++E+L+ G ++R+G+PAR+ + L + S +A+ +++ D
Sbjct: 264 NISVDTILERLNGKLPGDELLRIGHPARLLNSNLQHCLDIVTNTSDSGQLIADIKKEIDD 323
Query: 346 LRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA----- 400
K +++ + I Q +K+L K LKK+EK EV+ A+V++AT G++
Sbjct: 324 TIKKIKKT-RSYKEKKSIWQEVKELRKELKKREKTVTHEVILKAKVIMATLHGSSSRDLL 382
Query: 401 -----DPLIRRLDTF--DLVG-------------------KRCILAGDQCQLAPVIL--S 432
P ++ DT D V K+ +LAGD QL+P I +
Sbjct: 383 SIYNHQPGLKLFDTIIIDEVSQSLEPQCWIPLINHYGSNVKKLVLAGDNKQLSPTIKIDN 442
Query: 433 RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH 492
++E + ++ +R +++ L QYRMN++I ++SK +YGG L + +V++
Sbjct: 443 NPSVERILSTTIFDRLVSIYGDSFKNLLNIQYRMNESIMKFSSKVLYGGELKADESVSNI 502
Query: 493 LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVF 552
LL D P V+ T+ P++ DT+ + +H DL S +N+ EA +V H+
Sbjct: 503 LLTDFPEVEKNDYTEFPIIWYDTQGDFPEKD--SSDHNDL--IPSKFNDMEAYVVKFHLK 558
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMV 611
L+ +GV I + SPY AQV L++ + +D P VE++T+D FQGRE + +I+++V
Sbjct: 559 HLLKSGVKEEHIGIISPYNAQVSFLKKLIHNDWPR---VEISTVDGFQGREKEVIILTLV 615
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
RSN VGFL D +R+NVAITR + + +V D TI
Sbjct: 616 RSNLNKDVGFLKDEKRLNVAITRPKRQLCIVGDMETI 652
>gi|367044056|ref|XP_003652408.1| hypothetical protein THITE_2047968 [Thielavia terrestris NRRL 8126]
gi|346999670|gb|AEO66072.1| hypothetical protein THITE_2047968 [Thielavia terrestris NRRL 8126]
Length = 728
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 216/675 (32%), Positives = 325/675 (48%), Gaps = 122/675 (18%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF--------------------RVEGN-HRLPPTTLSPGDM 110
+ NL V + TGLGG ++ R +G + LP + GD+
Sbjct: 46 LTNLVVAAQRTGLGGRTVLELARDPALGVAGGGKGGGGAGGREQGKENELPEHGIRTGDI 105
Query: 111 VC-------------VRVCDSRGACATSCIQGFVHNLGEDGCTISV--ALESRHGDPT-- 153
V VR + RG ++G V +G ++V E R GD +
Sbjct: 106 VLLSEQPSGQARKREVRELERRG------VKGVVTRVGNAVVAVAVDEKAEDREGDGSGG 159
Query: 154 FSKLFGKSVRIDRIQGLADTLTYERNCEALM-LLQKNGLHKRNPSIAAVVTLFGDKEDVT 212
L R+ I +AD +T+ A M L K G + +P I LFG
Sbjct: 160 VGALLSGEKRV-WIVKVADDVTFRSRMNATMERLAKMGEAEYSPFIR---VLFGLSSPSP 215
Query: 213 WLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII 272
DL+ EV + T +DSQK AI L R + +I GPPGTGKT L E+I
Sbjct: 216 V--PADLSRDPEVGEIEWVDPTLNDSQKDAIRFAL-ASREIALIHGPPGTGKTHTLIELI 272
Query: 273 ARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKL 332
+ +++ +R+LV P+N +VDN+VE+L+ + ++R+G+PAR+ P+V + SL + ++
Sbjct: 273 LQLLKRNQRILVCGPSNISVDNIVERLAPHKVPLIRLGHPARLLPSVLNHSLDVLTRTSE 332
Query: 333 ASFV-----AEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLS 387
A + AE + K++ +RK R + ++ A LK+L K +++E+ V ++++
Sbjct: 333 AGAIVKDVRAEMDAKQASIRK-TRNAKERRAIYAD----LKELRKEYRERERRCVSDLVA 387
Query: 388 SAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAP 428
++VVLAT G+ +R + FD+V K+ I AGD QL P
Sbjct: 388 GSKVVLATLHGSGGFQLRD-EQFDVVIIDEASQALEAQCWVALLAAKKAICAGDHLQLPP 446
Query: 429 VILS---------------------RKALEGG-IGVSLLERAATLHEGVLATKLTTQYRM 466
I S ++G + +L +R LH + LTTQYRM
Sbjct: 447 TIKSLNSKMTKPSSTKGKDAAAAADEPTIKGATLETTLFDRLLKLHGPSIKRMLTTQYRM 506
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLG 525
++ I + S E+Y G LI++ V + LL D P+ V T T PL+ +DT+ G
Sbjct: 507 HEKIMRFPSDELYEGKLIAADAVKARLLRDLPYEVADTDDTTEPLVFIDTQ--GGDFPEK 564
Query: 526 CE-EHLDLAGTG------SFY-----NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
E E D AG G S Y NE EA +V HV L+ AGV P IAV +PY AQ
Sbjct: 565 NEDEQQDAAGGGKKLTKSSLYGDSKSNEMEAALVRQHVRRLVDAGVKPEDIAVVTPYNAQ 624
Query: 574 VQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAIT 633
+ L + P G+E+ ++D FQGRE +AVI+S+VRSN G VGFLG+ RR+NVA+T
Sbjct: 625 LAILAPLKEMFP---GIELGSVDGFQGREKEAVIVSLVRSNADGEVGFLGEKRRLNVAMT 681
Query: 634 RACKHVAVVCDSSTI 648
R + + V+ DS T+
Sbjct: 682 RPKRSLTVIGDSETV 696
>gi|358375281|dbj|GAA91865.1| DNA helicase [Aspergillus kawachii IFO 4308]
Length = 733
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 181/580 (31%), Positives = 290/580 (50%), Gaps = 96/580 (16%)
Query: 156 KLFGKSVRIDRIQGLADTLTYERNCEALMLLQK--NGLHKRNPSIAAVVTLFGDKEDVTW 213
+L+G+ V + + LA+ +TY R + + L K + H +A FG +
Sbjct: 189 ELWGRKVWMIK---LANDVTYRRMNQTMEKLVKMTDSEHTHFMRVA-----FGQTSPM-- 238
Query: 214 LEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA 273
L D+ + T +DSQK+AI L R + +I GPPGTGKT L E+I
Sbjct: 239 -----LPDYDSIGPLEFTDPTLNDSQKEAIRFAL-AAREIALIHGPPGTGKTHTLIELIV 292
Query: 274 RAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLA 333
+ VQ+ +RVLV P+N +VDN+VE+L+ + +VR+G+PAR+ P+V SL + + A
Sbjct: 293 QMVQRKQRVLVCGPSNISVDNIVERLAPKKVPVVRIGHPARLLPSVLDHSLEVLTHTSEA 352
Query: 334 SFVA-----EFERKKSDLRKDL----RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE 384
+ + E ++K++ +RK R+ + DD + +++E + V+
Sbjct: 353 AEIVRDVRKEIDQKQASIRKTRSARERRAIYDDLREL---------RREFRERENKCVEN 403
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
++ + VVLAT GA ++ FD+V + +LAGD Q
Sbjct: 404 LVRESSVVLATLHGAGGHQLKN-QKFDVVIIDEASQALEAQCWIPLLSASKVVLAGDHLQ 462
Query: 426 LAPVILSRK------------ALEGG-------IGVSLLERAATLHEGVLATKLTTQYRM 466
L P + S K E G + +L +R ++H + LTTQYRM
Sbjct: 463 LPPTVKSTKDDVRKMKAKEEDKKENGELLDNVSLETTLFDRLLSMHGPGIKRMLTTQYRM 522
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGS- 521
++ I + S E+Y L+++ TV + LL D P+ V+ T T+ PL+ DT+ P +
Sbjct: 523 HEKIMQFPSDELYDSKLMAADTVKARLLKDLPYEVEETDDTKEPLVFWDTQGGDFPEKTE 582
Query: 522 -LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV----QH 576
LG + HL S N+ EA +V HV +L+ AG+ P IAV +PY Q+ Q
Sbjct: 583 DADLGKKAHLG----DSKSNDMEALVVSRHVDALVDAGIHPEDIAVITPYNGQLAVLSQM 638
Query: 577 LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
LRE+ +E+ ++D FQGRE +AV++S+VRSN+ VGFLG+ RR+NVA+TR
Sbjct: 639 LREKY------PSIELGSVDGFQGREKEAVVVSLVRSNSEHEVGFLGERRRLNVAMTRPK 692
Query: 637 KHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
+H+ + DS TI + FL R + + +++ G
Sbjct: 693 RHLCICGDSETISKGSGFLKRWMAFLEEHADLRYPNAGDL 732
>gi|225679961|gb|EEH18245.1| DNA-binding protein SMUBP-2 [Paracoccidioides brasiliensis Pb03]
Length = 753
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 167/499 (33%), Positives = 259/499 (51%), Gaps = 67/499 (13%)
Query: 223 SEVKLDGI-----MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ 277
S V +D I + T +DSQ++AI L R + +I GPPGTGKT L E+I + ++
Sbjct: 241 SPVDMDSIGTIDFIDPTLNDSQREAIRFAL-ASREIALIHGPPGTGKTYTLIELILQLLR 299
Query: 278 QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA 337
+ RVLV P+N +VDN+VE+L+ + +VR+G+PAR+ + SL + ++ A+ +
Sbjct: 300 RNLRVLVCGPSNVSVDNIVERLAPHKVPLVRIGHPARLLSTILDYSLEVLTQTSDAAAIV 359
Query: 338 EFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
+ RK+ ++++ + + I + LK+L K +++E + V +++ ++VVLAT
Sbjct: 360 KDVRKEIEIKQASIRKTRSGRERREIYRDLKELRKEFREREAKCVGNLVTDSKVVLATLH 419
Query: 398 GAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILS------ 432
GA +R FD+V + ILAGD QL P I S
Sbjct: 420 GAGGHQLRN-QKFDVVIIDEASQALEAQCWVPLLSATKAILAGDHLQLPPTIRSVPLKSN 478
Query: 433 -------------------------RKALEG-GIGVSLLERAATLHEGVLATKLTTQYRM 466
KA +G + V+L +R +LH + LTTQYRM
Sbjct: 479 GAESGKSNGEEKATLSADKDSSVGQHKATKGVTLEVTLFDRLLSLHGPAIKRMLTTQYRM 538
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSL 522
++ I + SKE+Y L+++ V LL D + V T T+ PL+ DT+ P +
Sbjct: 539 HEKIMKFPSKELYESKLVAADAVKLRLLKDLQYEVAETDDTREPLVFYDTQGGDFPEQTE 598
Query: 523 SLGCE--EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
E + + S N+ EA +V HV +L+ GV P IAV +PY AQ+ L +
Sbjct: 599 EPAVESKQKQEPMFAESKSNDMEAAVVSRHVENLVATGVKPEDIAVVTPYNAQLAILSQL 658
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
L D + G+E+ ++D FQGRE +AVI+S+VRSN VGFLG+ RR+NVA+TR +H+
Sbjct: 659 LRD--KHPGIELGSVDGFQGREKEAVIVSLVRSNPEHKVGFLGEKRRLNVAMTRPKRHLC 716
Query: 641 VVCDSSTICHNT-FLARLL 658
V DS TI + FL R +
Sbjct: 717 VCGDSETIRRGSQFLRRWM 735
>gi|393244587|gb|EJD52099.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 714
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 219/755 (29%), Positives = 340/755 (45%), Gaps = 149/755 (19%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
F R +LL+ ERDA +E + + SS + L S G A + NL
Sbjct: 10 FLARQRKLLQAERDAVVEQSTLLI-----------SSCSPKLLESRGLA-------LLNL 51
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHR----LPPTTLSPGDMVCVRVCDSRGACATSC----- 126
VV+ GLGG LV H PP T PGD+ + S S
Sbjct: 52 GVVNVRVGLGGKTLVELERPAAHSSSSVFPPHTFRPGDIARIDEHTSSATAKPSAKVKKT 111
Query: 127 -------IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERN 179
I+G ++ + + ++V G+ + S+ R ++ +A+T T++R
Sbjct: 112 ESKDAKDIEGVIYKVSDTKIIVAV-----DGEGSGSQELELPSRCKLVK-IANTATFDRM 165
Query: 180 CEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGI--MGKTFDD 237
A+ L+K H + A V+ F + + L N + V + + + + +
Sbjct: 166 DRAIDTLEK---HMQG---TAAVSSFNNANLIRVLM-NQQPPSAPVPMTDLQYLEASLNS 218
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ++A+ L + I GPPGTGKT L EI+ + V + + VLV +N AVDN++E
Sbjct: 219 SQQQAVKFALEAAE-VACIHGPPGTGKTHTLVEIVRQLVARNKSVLVCGASNLAVDNLLE 277
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCL-- 354
+L + + R+G+PAR+ A+ + +L + V+S+ + +D++KD+ +
Sbjct: 278 RLVPHRIPLTRIGHPARVMEALHAATLDAQTVRSEQYALA-------NDVKKDIDAAMGA 330
Query: 355 ----KDDSLAAGIRQLL----KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD-PLIR 405
L R+ + ++L K +K+E V V+ A+VVLAT GA L
Sbjct: 331 LTGKGKGKLRGPERKKMWGEIRELRKEYRKREGTVVSSVVKQAKVVLATCHGAGGRQLYD 390
Query: 406 RLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEG-------- 438
RL FD+V G + ILAGD CQL P ++S +
Sbjct: 391 RL--FDVVIIDEATQALEAVSWVPIFKGAKLILAGDPCQLPPTVISTNQKKAKTKKTEAK 448
Query: 439 -------------------------GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASW 473
+ V+L +R ++ + LT QYRM+ IA +
Sbjct: 449 PPAPAKKDNKKKGAKTGNGVLKPPRSLEVTLFDRLERMYGPSIKRMLTVQYRMHAQIAQF 508
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKP-----TWITQCPLLLLDTRLPYGSLSLGCEE 528
SK +YG +L+S +V +H L D P + + + + P++ DT GCE
Sbjct: 509 PSKTLYGNALVSHDSVKAHRLRDLPAAQDKGDEHSDVLETPVVFFDT--------AGCEY 560
Query: 529 HLDLAG----------TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
L G GS NE EA +V + V L+ GVSPS IA+ +PY AQV L
Sbjct: 561 FERLEGDGQDGAKGIEEGSRCNENEAVVVKNWVERLVEGGVSPSQIAIITPYQAQVTLLS 620
Query: 579 ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L P +E+ ++D QGRE +AV++S+VRSN VGFL D RR+NVA+TRA +H
Sbjct: 621 SLLR--PSMPDLEIGSVDGMQGREKEAVVLSLVRSNDKREVGFLKDKRRLNVAMTRARRH 678
Query: 639 VAVVCDSSTICH-NTFLARLLRHIRYFGRVKHAEP 672
+ VV DSSTI H +L + + V++A P
Sbjct: 679 LCVVGDSSTIQHGGKYLKNWMAWLEANADVRYAGP 713
>gi|169777529|ref|XP_001823230.1| DNA polymerase alpha-associated DNA helicase A [Aspergillus oryzae
RIB40]
gi|83771967|dbj|BAE62097.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 720
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 184/606 (30%), Positives = 298/606 (49%), Gaps = 84/606 (13%)
Query: 128 QGFVHNLGEDGCTISVALE-----SRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEA 182
+G V +GE ++ + S+ D +L+GK + + + LA+ +TY R +
Sbjct: 140 EGVVTRVGERSVWVAFGQQGGGGRSKEDDEAIEELWGKKLWLIK---LANDVTYRRMRQT 196
Query: 183 L----MLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDS 238
+ +++ + H + L D V +E ND + +DS
Sbjct: 197 MEKMGKIIESDYTHFMRVAFGHTTPLPPDYGAVGDVEFND--------------PSLNDS 242
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
QK+AI L R + +I GPPGTGKT L E+I + VQ+ RVLV P+N +VDN+VE+
Sbjct: 243 QKEAIRFAL-ASRDIALIHGPPGTGKTHTLIELILQMVQRKLRVLVCGPSNISVDNIVER 301
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
L+ + +VR+G+PAR+ P+V SL + + A+ + RK+ D + + +
Sbjct: 302 LAPKKVPVVRIGHPARLLPSVLEHSLEVLTHTSDAASIVRDVRKEIDQKVASIRKTRFGR 361
Query: 359 LAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----- 413
I Q LK+L + +++E + V ++ + VVLAT GA ++ FD+V
Sbjct: 362 EKRAIYQDLKELRREFRERESKCVDNLVRESSVVLATLHGAGGHQLKN-QKFDVVIIDEA 420
Query: 414 --------------GKRCILAGDQCQLAPVILS----RKALEGG---------------- 439
+ +LAGD QL P + S K ++ G
Sbjct: 421 SQALEAQCWISLLSASKVVLAGDHLQLPPTVKSTDQKSKDVKAGKVDTVNDGDNGVLGKM 480
Query: 440 -IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+ ++ +R +LH + LTTQYRM++ I + S E+Y L++ V + LL D P
Sbjct: 481 SLETTMFDRLLSLHGESIKRMLTTQYRMHETIMRFPSDELYESKLMAGDAVKARLLKDLP 540
Query: 499 F-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSL 554
+ V+ T T+ PL+ DT+ P + + L G S NE EA +V HV +L
Sbjct: 541 YDVEETDDTKEPLVFWDTQGGDFPEKTEDKEVGQKEALLGE-SKSNEMEAMVVAKHVDNL 599
Query: 555 ICAGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
+ +G+ P IAV +PY Q+ Q LRE+ G+E+ ++D FQGRE +AV++S+
Sbjct: 600 VQSGLKPEDIAVITPYNGQLAILSQMLREKY------PGIELGSVDGFQGREKEAVVVSL 653
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKH 669
VRSN+ VGFLG+ RR+NVA+TR +H+ V DS TI + FL R + + +++
Sbjct: 654 VRSNSENEVGFLGEKRRLNVAMTRPKRHLCVCGDSETISKGSGFLKRWMAFLEENADLRY 713
Query: 670 AEPGSF 675
+ G
Sbjct: 714 PDAGGL 719
>gi|330944918|ref|XP_003306458.1| hypothetical protein PTT_19600 [Pyrenophora teres f. teres 0-1]
gi|311316071|gb|EFQ85482.1| hypothetical protein PTT_19600 [Pyrenophora teres f. teres 0-1]
Length = 674
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 209/651 (32%), Positives = 317/651 (48%), Gaps = 98/651 (15%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG-------NHRLPPTTLSPGDMVCVRVCDS------ 118
I NL V S TGLGG +V ++ +P + GD+V V+ S
Sbjct: 48 ILNLNVSSIRTGLGGKTVVELGLDSAVVAKGEKADIPEHGIRVGDIVAVQDQPSGSAKKA 107
Query: 119 -RGACATSCIQGFVHNLGEDGCTISVALESRHGD-PTFSKLFGKSVRIDRIQGLADTLTY 176
+ G V + + + + L+ D PT KL+ I LA+ +TY
Sbjct: 108 EKKELEKKGAAGVVLKVRRE--NVEIVLDKEDADVPTGGKLW--------IVKLANDVTY 157
Query: 177 ERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSE--VKLDGIMGKT 234
+R + + LQK G P + LFG +D+ D S KL+ I +
Sbjct: 158 KRMNQTMSRLQKLGDQDYTPFMR---VLFGQASPTPL--PSDVNDPSNPLYKLEWI-DAS 211
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+DSQ++AI L R + +I GPPGTGKT L E+I + ++Q R+LV P+N +VDN
Sbjct: 212 LNDSQQEAIRFAL-ASREVALIHGPPGTGKTHTLIELILQLLKQKLRLLVCGPSNISVDN 270
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+VE+L+ + +VR+G+PAR+ P+V S SL + ++ A+ + + RK+ D D + +
Sbjct: 271 IVERLASHKVPMVRLGHPARLLPSVLSHSLDVLTRTSEAAALVQDVRKEMD---DKQSSI 327
Query: 355 KDDSLAAGIRQL---LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ A RQ+ LK+L + +++EK V ++S ++VVLAT GA ++ + FD
Sbjct: 328 RKTRNAKERRQIYTELKELRQEFREREKGCVNNLVSGSKVVLATLHGAGGFHLKGQE-FD 386
Query: 412 LV---------------------GKRCILAGDQCQLAPVILS------------------ 432
+V + +LAGD QL P I S
Sbjct: 387 VVIVDEASQALEAQCWVPLLWVKASKLVLAGDHLQLPPTIKSLNSKESKAAKKDAKKSKD 446
Query: 433 ------RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISS 486
+ + +L +R LH + LTTQYRM++ I + S E+Y LI++
Sbjct: 447 ETDEAEKSTSSMTLETTLFDRLLALHGPSIKRMLTTQYRMHERIMRFPSDELYDSKLIAA 506
Query: 487 STVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEH--LDLAGTG-----SF 538
V LL D P+ V+ T ++ PL+ DT+ G E+ + G G S
Sbjct: 507 DLVKERLLKDLPYEVEDTEDSREPLVFWDTQ--GGEFPEKIEDSGVIGKGGKGMNVGDSK 564
Query: 539 YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSF 598
NE EA +V HV +LI AGV IAV +PY AQ+ L L + G+E+ ++D F
Sbjct: 565 SNEAEAALVKMHVSNLISAGVKAEDIAVVTPYNAQLALLGGMLKE--AYPGIELGSVDGF 622
Query: 599 QGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
QGRE +AVI+S VRSN+ VGFLG+ RR+NVA+TR +H+ V+ DS TI
Sbjct: 623 QGREKEAVIVSTVRSNSKHEVGFLGEKRRLNVAMTRPKRHLCVIGDSETIS 673
>gi|391871546|gb|EIT80706.1| DNA helicase [Aspergillus oryzae 3.042]
Length = 728
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 184/606 (30%), Positives = 298/606 (49%), Gaps = 84/606 (13%)
Query: 128 QGFVHNLGEDGCTISVALE-----SRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEA 182
+G V +GE ++ + S+ D +L+GK + + + LA+ +TY R +
Sbjct: 148 EGVVTRVGERSVWVAFGQQGGGGRSKEDDEAIEELWGKKLWLIK---LANDVTYRRMRQT 204
Query: 183 L----MLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDS 238
+ +++ + H + L D V +E ND + +DS
Sbjct: 205 MEKMGKIIESDYTHFMRVAFGHTTPLPPDYGAVGDVEFND--------------PSLNDS 250
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
QK+AI L R + +I GPPGTGKT L E+I + VQ+ RVLV P+N +VDN+VE+
Sbjct: 251 QKEAIRFAL-ASRDIALIHGPPGTGKTHTLIELILQMVQRKLRVLVCGPSNISVDNIVER 309
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
L+ + +VR+G+PAR+ P+V SL + + A+ + RK+ D + + +
Sbjct: 310 LAPKKVPVVRIGHPARLLPSVLEHSLEVLTHTSDAASIVRDVRKEIDQKVASIRKTRFGR 369
Query: 359 LAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----- 413
I Q LK+L + +++E + V ++ + VVLAT GA ++ FD+V
Sbjct: 370 EKRAIYQDLKELRREFRERESKCVDNLVRESSVVLATLHGAGGHQLKN-QKFDVVIIDEA 428
Query: 414 --------------GKRCILAGDQCQLAPVILS----RKALEGG---------------- 439
+ +LAGD QL P + S K ++ G
Sbjct: 429 SQALEAQCWISLLSASKVVLAGDHLQLPPTVKSTDQKSKDVKAGKVDTVNDGDNGVLGKM 488
Query: 440 -IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+ ++ +R +LH + LTTQYRM++ I + S E+Y L++ V + LL D P
Sbjct: 489 SLETTMFDRLLSLHGESIKRMLTTQYRMHETIMRFPSDELYESKLMAGDAVKARLLKDLP 548
Query: 499 F-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSL 554
+ V+ T T+ PL+ DT+ P + + L G S NE EA +V HV +L
Sbjct: 549 YDVEETDDTKEPLVFWDTQGGDFPEKTEDKEVGQKEALLGE-SKSNEMEAMVVAKHVDNL 607
Query: 555 ICAGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
+ +G+ P IAV +PY Q+ Q LRE+ G+E+ ++D FQGRE +AV++S+
Sbjct: 608 VQSGLKPEDIAVITPYNGQLAILSQMLREKY------PGIELGSVDGFQGREKEAVVVSL 661
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKH 669
VRSN+ VGFLG+ RR+NVA+TR +H+ V DS TI + FL R + + +++
Sbjct: 662 VRSNSENEVGFLGEKRRLNVAMTRPKRHLCVCGDSETISKGSGFLKRWMAFLEENADLRY 721
Query: 670 AEPGSF 675
+ G
Sbjct: 722 PDAGGL 727
>gi|412987690|emb|CCO20525.1| predicted protein [Bathycoccus prasinos]
Length = 849
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 173/512 (33%), Positives = 250/512 (48%), Gaps = 95/512 (18%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ D SQK AI L L+ + II GPPGTGKT + E +++ V +G RVLV + +N
Sbjct: 350 FNENLDCSQKSAIQLCLDCV-DVGIIHGPPGTGKTTAVVEYVSQEVARGNRVLVCSASNV 408
Query: 291 AVDNMVEKLSDVGL--------------------------------------NIVRVGNP 312
AVDN+VE+LS V + IVR G+P
Sbjct: 409 AVDNVVERLSGVSIFRTATVSVDNKKKKGRRERKKKDLSVEIEILAVDDQSKTIVRYGHP 468
Query: 313 ARISPAVASKSLGEIV----KSKLASFVAEFERK------KSDLRKDLRQCLKDDSLAAG 362
AR++PAV SL + S LA +E +K K D RK + ++D
Sbjct: 469 ARLAPAVLDASLDAYILRSDDSALAKECSEDSKKIRTRISKLDYRKKEDRAERND----- 523
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--------- 413
+R+ L++L K KK++K + L A V+ AT GA ++ + FD+V
Sbjct: 524 LRRELRELAKEEKKRQKLAQAKTLEKASVICATLAGALSFALKN-EEFDVVVVDEAAQAL 582
Query: 414 ----------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE--GVLATKLT 461
GK+ +LAGD QL P +LS +A + G+ +L ER + T L
Sbjct: 583 ECAVLGVVMKGKKLVLAGDHLQLPPTVLSDEAAQKGLSTTLFERLVRNKRFGAKITTMLN 642
Query: 462 TQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGS 521
TQYRM++ I W+S MY LI++ +V F K + L L+DT S
Sbjct: 643 TQYRMHEDIMVWSSDAMYDSKLIAAESVR--------FRKFEQFDKV-LTLVDTTGEDDS 693
Query: 522 LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG--VSPSAIAVQSPYVAQVQHLRE 579
E++ S N GEAEIV+ + + + P+ I V +PY QV LRE
Sbjct: 694 FM----ENVGDDDDDSKSNLGEAEIVMQTIEKFLSDAYKILPNEIGVITPYSGQVSLLRE 749
Query: 580 ----RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
R ++ +E++T+D FQGRE +A+IIS VRSN VGFL D+RRMNVA+TRA
Sbjct: 750 MRAARAEENALFKDIEISTVDGFQGREKEAIIISTVRSNENNEVGFLSDARRMNVAVTRA 809
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
KHV ++C+ T+ +TFLA L+++ G +
Sbjct: 810 RKHVTLICNCETVSKDTFLAHLVQYFEENGEL 841
>gi|302680102|ref|XP_003029733.1| hypothetical protein SCHCODRAFT_78153 [Schizophyllum commune H4-8]
gi|300103423|gb|EFI94830.1| hypothetical protein SCHCODRAFT_78153 [Schizophyllum commune H4-8]
Length = 708
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 234/758 (30%), Positives = 332/758 (43%), Gaps = 158/758 (20%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEEL-NAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
S L F +R +LL ER AE+E + L N P + L G A
Sbjct: 4 SNLSRFIERQRQLLSAERQAEIERSSLLLSNCGP------------KLLEHKGLA----- 46
Query: 70 DTICNLFVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLSPGDMVCVRVC-----DSRG 120
+ NL V S + GLGG LV L R +H P TL GD+ C+ ++G
Sbjct: 47 --LLNLGVASINIGLGGKTLVELERPSAHHASPIFPLHTLRTGDLACIEANVTSTPKTKG 104
Query: 121 ACATSC---------IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLA 171
A +G V+ + + T++V + P +L LA
Sbjct: 105 ASKKQASTTEYKGKVAEGVVYKMSDTRITVAVDTDEELDLPDRLRLVK----------LA 154
Query: 172 DTLTYERNCEALMLLQKNGLHKRNPSIAAVV--------TLFGDKEDVTWLEENDLADWS 223
+ +TY+R +A+ L+K + NP L G + NDL
Sbjct: 155 NNVTYDRMDKAIDTLEK--ITSDNPPDDKAFPRLNTMHHVLLGQASPSAKVAVNDLE--- 209
Query: 224 EVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVL 283
+ T +DSQK AI L + I GPPGTGKT L E+I + +G+R+L
Sbjct: 210 ------FLDPTLNDSQKDAIRFCLGSPE-VACIHGPPGTGKTHTLIELIWQLCARGQRLL 262
Query: 284 VTAPTNAAVDNMVEKLSDVG-------LNIVRVGNPARI--------------SPAVASK 322
V +N AVDN++E+L + L + RVG+PAR+ + +
Sbjct: 263 VCGASNLAVDNILERLLALPADSRTSRLKVTRVGHPARVMANEDVLDATLEVQAGRTDAA 322
Query: 323 SLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETV 382
+L + VK++L + + K + + L+ + ++ L K+ +++E V
Sbjct: 323 ALAKDVKAELEAALGVLSGKGKGAKGKAPRGLERKKMWDEVKALRKEY----RQREGGVV 378
Query: 383 KEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQ 423
K VLS AQVVLAT A + +R LD FD V K+ +LAGD
Sbjct: 379 KSVLSEAQVVLATCHTAGNRQLRSLD-FDTVIIDEATQAVEAVCWVPIFKAKKLVLAGDP 437
Query: 424 CQLAPVILS--RKALEGG-------------IGVSLLERAATLHEGVLATKLTTQYRMND 468
QL P ILS +K + + +L +R +H + L QYRM++
Sbjct: 438 MQLPPTILSIDKKGKDKKQRTRTPILRPPRTLETTLFDRLERMHGPSIKRMLKVQYRMHE 497
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ-----------CPLLLLDTRL 517
I ++ SK +YGG L +VA LL D P V+ + P++ DT
Sbjct: 498 DICAFPSKALYGGKLQPDPSVAKRLLRDLPSVQIARESAGIGEDEDDPLASPVVFFDT-- 555
Query: 518 PYGSLSLGCEEHLDLAG---TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
GCE + L G GS NE EA IV V L AGV PS IAV +PY AQ+
Sbjct: 556 ------AGCEYYERLEGDNDEGSRCNENEATIVKGWVGELTQAGVLPSQIAVITPYQAQL 609
Query: 575 QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
L L L +E+ T+D QGRE +AVIISMVRSN VGFL + RRMNVA+TR
Sbjct: 610 GLLTSLLRPL-HGPDLEIGTVDGMQGREKEAVIISMVRSNDKREVGFLKEKRRMNVAMTR 668
Query: 635 ACKHVAVVCDSSTICH-----NTFLARLLRH--IRYFG 665
A + + VV DS T+ + +LA L H +RY G
Sbjct: 669 AKRQLCVVGDSGTVAYGGTYLKEWLAWLEAHADVRYGG 706
>gi|440484591|gb|ELQ64645.1| DNA-binding protein SMUBP-2 [Magnaporthe oryzae P131]
Length = 1265
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 162/459 (35%), Positives = 233/459 (50%), Gaps = 62/459 (13%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +DSQK AI L K + +I GPPGTGKT L E+I + ++QG R+LV P+N +VD
Sbjct: 602 TLNDSQKDAIRFALASKE-IALIHGPPGTGKTHTLIELILQMLKQGLRILVCGPSNISVD 660
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+VE+L+ + IVR+G+PAR+ P+V SL + ++ A + R + D ++ +
Sbjct: 661 NIVERLAPHKVPIVRLGHPARLLPSVVGHSLDVLTQTSEAGAIVRDVRAEMDAKQASIKK 720
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
K I L +L K + +EK V +L S++VVLAT G+ +R+ + FD+V
Sbjct: 721 TKSGRERKAIYGELHELRKEFRDREKRCVANLLQSSKVVLATLHGSGGFQLRQ-EKFDVV 779
Query: 414 -------------------GKRCILAGDQCQLAPVILS-----RKALEGGIG-------- 441
K+ +LAGD QL P I S K GG G
Sbjct: 780 IIDEASQALEAQCWVALLSAKKAVLAGDHLQLPPTIKSLNSKAAKTATGGDGSGTADGEE 839
Query: 442 ---------------VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISS 486
+L +R LH + LTTQYRM++ I + S E+YGG L+++
Sbjct: 840 SSAGQSRKKKGVTLETTLFDRLLDLHGPAIKRMLTTQYRMHEKIMRFPSDELYGGRLVAA 899
Query: 487 STVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTG------ 536
V LL D P+ V+ T T PL+ +DT+ P + + + D T
Sbjct: 900 EAVKERLLKDLPYKVEDTDDTSEPLIFIDTQGGDFPERNDEMDNGDADDKKKTKRMLLHG 959
Query: 537 -SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATI 595
S NE EA +V HV SL+ AGV P IA +PY AQ+ L L D G+E+ ++
Sbjct: 960 ESKSNEMEAALVAQHVRSLVDAGVKPEDIACITPYNAQLAVLAPLLKD--RFPGIELGSV 1017
Query: 596 DSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
D FQGRE +AV++S+ RSN G VGFLG+ RR+N R
Sbjct: 1018 DGFQGREKEAVVVSLCRSNPDGEVGFLGERRRLNAPTRR 1056
>gi|440473747|gb|ELQ42525.1| DNA-binding protein SMUBP-2 [Magnaporthe oryzae Y34]
Length = 877
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 162/459 (35%), Positives = 233/459 (50%), Gaps = 62/459 (13%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +DSQK AI L K + +I GPPGTGKT L E+I + ++QG R+LV P+N +VD
Sbjct: 214 TLNDSQKDAIRFALASKE-IALIHGPPGTGKTHTLIELILQMLKQGLRILVCGPSNISVD 272
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+VE+L+ + IVR+G+PAR+ P+V SL + ++ A + R + D ++ +
Sbjct: 273 NIVERLAPHKVPIVRLGHPARLLPSVVGHSLDVLTQTSEAGAIVRDVRAEMDAKQASIKK 332
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
K I L +L K + +EK V +L S++VVLAT G+ +R+ + FD+V
Sbjct: 333 TKSGRERKAIYGELHELRKEFRDREKRCVANLLQSSKVVLATLHGSGGFQLRQ-EKFDVV 391
Query: 414 -------------------GKRCILAGDQCQLAPVILS-----RKALEGGIG-------- 441
K+ +LAGD QL P I S K GG G
Sbjct: 392 IIDEASQALEAQCWVALLSAKKAVLAGDHLQLPPTIKSLNSKAAKTATGGDGSGTADGEE 451
Query: 442 ---------------VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISS 486
+L +R LH + LTTQYRM++ I + S E+YGG L+++
Sbjct: 452 SSAGQSRKKKGVTLETTLFDRLLDLHGPAIKRMLTTQYRMHEKIMRFPSDELYGGRLVAA 511
Query: 487 STVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTG------ 536
V LL D P+ V+ T T PL+ +DT+ P + + + D T
Sbjct: 512 EAVKERLLKDLPYKVEDTDDTSEPLIFIDTQGGDFPERNDEMDNGDADDKKKTKRMLLHG 571
Query: 537 -SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATI 595
S NE EA +V HV SL+ AGV P IA +PY AQ+ L L D G+E+ ++
Sbjct: 572 ESKSNEMEAALVAQHVRSLVDAGVKPEDIACITPYNAQLAVLAPLLKD--RFPGIELGSV 629
Query: 596 DSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
D FQGRE +AV++S+ RSN G VGFLG+ RR+N R
Sbjct: 630 DGFQGREKEAVVVSLCRSNPDGEVGFLGERRRLNAPTRR 668
>gi|448511934|ref|XP_003866635.1| Hcs1 protein [Candida orthopsilosis Co 90-125]
gi|380350973|emb|CCG21196.1| Hcs1 protein [Candida orthopsilosis Co 90-125]
Length = 669
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 195/648 (30%), Positives = 311/648 (47%), Gaps = 86/648 (13%)
Query: 46 DENSDSSKPIEFLVSHGRAPQELCD---TICNLFVVSTSTGLGGMHLVLFRVEG---NHR 99
++ D ++ E++ ++ P++L + NL + + TG+GG ++ +++ N
Sbjct: 14 EQEEDVAQTTEYINAY--PPKKLAQMGLAVINLNISNMRTGIGGKTILELQLDNAISNGD 71
Query: 100 LPPTTLSPGDMVCV------RVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPT 153
L ++ GD+V + + D I+ V + TI+V+++ GD
Sbjct: 72 LSSASMKTGDIVRIDKMTKAKKKDEESKEKDESIEAVVVKVS--NLTITVSVDESAGDDK 129
Query: 154 FSKLFGKSVRIDRIQ--GLADTLTYERNCEALMLL------QKNGLHKRNPSIAAVVTLF 205
+ + RI L++ +TY+R + + +KN +HK L
Sbjct: 130 VLNYYNNTNDSTRIWIVKLSNAITYKRMITTMNKVLELKESEKNDIHK---------LLL 180
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
G+ + T N D+ + + SQK AI +NK + II GPPGTGKT
Sbjct: 181 GETK-YTLSNGNSSIDF--------FNRGLNRSQKSAIDFAINKSN-ISIIFGPPGTGKT 230
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD--VGLNIVRVGNPARISPAVASKS 323
L E+I + +GE+VLV P+N +VD ++E+L + +VR+G+PAR+ P S
Sbjct: 231 MTLVELIRQLTTRGEKVLVCGPSNISVDTILERLGEHYKAGELVRIGHPARLLPVNVQHS 290
Query: 324 LGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVK 383
L + KS + + E + +++C K + Q LK L K L ++E++ V
Sbjct: 291 LEVLSKSYGRDVIKDLENDIQSVLGKIKKC-KRYVERKTLYQELKSLKKELVQRERKIVH 349
Query: 384 EVLSSAQVVLATNTGAADPLIRRLD-TFDLV----------------------GKRCILA 420
E+L+ A+VVLAT GA ++R FD + KR ++A
Sbjct: 350 ELLNQAKVVLATLHGAGSYDLKRSGANFDSIIIDEVSQSLEPQCWIPLLHNDKFKRLVIA 409
Query: 421 GDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMY 479
GD QL P I+S A + +L +R EG KL QYRMND+I + S ++Y
Sbjct: 410 GDNMQLPPTIMSGTATL--LETTLFDRLVNKLEGDKFKKLLNVQYRMNDSIMKFPSMQLY 467
Query: 480 GGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTG 536
LI +V L D P V T + DT+ P E+ L+
Sbjct: 468 EDKLIGDESVKEIKLTDLPGVSRNDETNVQCVWYDTQGGDFP--------EQKLESIKGD 519
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATID 596
S YNE E +IV HV LI +GV P I + +PY AQVQ L+++L P++ +EV+T+D
Sbjct: 520 SKYNEMELQIVRGHVKKLIESGVPPQDIGIIAPYAAQVQLLKKQLG--PDSL-IEVSTVD 576
Query: 597 SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
FQGRE + +I+++VRSN VGFL + RR+NVAITR + + V+ D
Sbjct: 577 GFQGREKEVIILTLVRSNDERDVGFLSEERRLNVAITRPKRQLCVIGD 624
>gi|366996476|ref|XP_003678001.1| hypothetical protein NCAS_0H03440 [Naumovozyma castellii CBS 4309]
gi|342303871|emb|CCC71654.1| hypothetical protein NCAS_0H03440 [Naumovozyma castellii CBS 4309]
Length = 681
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 211/701 (30%), Positives = 335/701 (47%), Gaps = 131/701 (18%)
Query: 15 EFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICN 74
E +R E + ERD ++E T + LN +P P LV+ G A I N
Sbjct: 4 ELAERFLESISHERDQDVEITTQLLNTLPLPK-----------LVATGYA-------ITN 45
Query: 75 LFVVSTSTGLGG-MHLVLFRVEG-NHRLPPTTLSPGDMVCVRVCDSR------------- 119
L + + TGL G ++L L + + + + GD+V V+ S
Sbjct: 46 LNLENVRTGLAGKLYLELGPDQAIDSEISRGDIKVGDIVVVKPSISHHKKHANPKKHGKH 105
Query: 120 --------GACATSCIQ--GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQG 169
T +Q G V L E TI++ ES+ + T KL+ +R+
Sbjct: 106 NKDNGTDNNEEVTEDVQCSGVVLKLSEQQITITLE-ESQEQEAT--KLYA----FNRLHL 158
Query: 170 L--ADTLTYERNCEALM--LLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV 225
L +T+TY+R E+ M L + +G+ P+ V L ++ + + +
Sbjct: 159 LKTTNTITYKR-MESTMRKLAEFDGV----PNNKIVQYLLNERPFIKQTNSDKIT----- 208
Query: 226 KLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285
+ SQ AI L + II GPPGTGKT L E+I + V +G+RVLV
Sbjct: 209 ----FNNPNLNKSQTDAIKFAL--ANDISIIHGPPGTGKTYTLIELIQQLVAKGQRVLVC 262
Query: 286 APTNAAVDNMVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA-----E 338
P+N +VD ++E+LS G ++R+G+PAR+ + S SL + +S A + +
Sbjct: 263 GPSNISVDTILERLSKALPGNLLLRIGHPARLLESNLSHSLDILSRSGDAGAIVKDIYHD 322
Query: 339 FERKKSDLRK-----DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
++ SD++K D ++ +D +K+L K L+ +EK+ V +++ A+VV+
Sbjct: 323 IDKTISDIKKIKSWKDRKEAWRD----------VKELRKELRVREKKVVNDLILEAKVVV 372
Query: 394 ATNTGAA--------DPLIRRLDTF--DLVGK-------------------RCILAGDQC 424
AT G++ D + DT D V + + +LAGD
Sbjct: 373 ATLHGSSSRELCRIYDQVPHLFDTLIIDEVSQSLEPQCWIPLISHYKSDISKLVLAGDNK 432
Query: 425 QLAPVILSR--KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
QL P I + K + +G +L +R + L QYRMN+ I ++S+EMY G
Sbjct: 433 QLPPTIKTEDDKKTQLILGTTLFDRLVKHYGDSFKQLLNVQYRMNEDIMEFSSQEMYDGK 492
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG 542
L++ ++VA+++L D P V+ T PL+ DT+ G + E D S +NE
Sbjct: 493 LLADASVATNVLTDLPGVENNDDTTVPLIWYDTQ---GDDYIETAEQ-DEGIISSKFNEN 548
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGR 601
EA +V HHV LI + V +AI + SPY AQV +++ + +D P +E++T+D FQGR
Sbjct: 549 EALLVKHHVIKLIESNVPQTAIGIISPYSAQVSLIKKLIREDYP---LIEISTVDGFQGR 605
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
E + +I+S+VRSN VGFL D RR+NVA+TR K + VV
Sbjct: 606 EKEVIILSLVRSNDKFEVGFLKDERRLNVAMTRPKKQLCVV 646
>gi|317037841|ref|XP_001402440.2| DNA helicase [Aspergillus niger CBS 513.88]
Length = 714
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 177/580 (30%), Positives = 290/580 (50%), Gaps = 96/580 (16%)
Query: 156 KLFGKSVRIDRIQGLADTLTYERNCEAL--MLLQKNGLHKRNPSIAAVVTLFGDKEDVTW 213
+L+G+ V + + LA+ +TY R + + M+ H +A FG +
Sbjct: 170 ELWGRKVWMIK---LANDVTYRRMNQTMEKMVKMAESEHTHFMRVA-----FGHTSPM-- 219
Query: 214 LEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA 273
L D+ + T +DSQK+AI L R + +I GPPGTGKT L E+I
Sbjct: 220 -----LPDYDSIGALEFTDPTLNDSQKEAIRFAL-AAREIALIHGPPGTGKTHTLIELIV 273
Query: 274 RAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLA 333
+ VQ+ +RVLV P+N +VDN+VE+L+ + +VR+G+PAR+ P+V SL + + A
Sbjct: 274 QMVQRKQRVLVCGPSNISVDNIVERLAPKKVPVVRIGHPARLLPSVLDHSLEVLTHTSEA 333
Query: 334 SFVA-----EFERKKSDLRKDL----RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE 384
+ + E ++K++ +RK R+ + DD + +++E + V+
Sbjct: 334 AAIVRDVRKEIDQKQASIRKTRAARERRAIYDDLREL---------RREFRERENKCVEN 384
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
++ + VVLAT GA ++ FD+V + +LAGD Q
Sbjct: 385 LVRESSVVLATLHGAGGHQLKN-QKFDVVIIDEASQALEAQCWIPLLSASKVVLAGDHLQ 443
Query: 426 LAPVILSR------------------KALEG-GIGVSLLERAATLHEGVLATKLTTQYRM 466
L P + S + LE + +L +R ++H + LTTQYRM
Sbjct: 444 LPPTVKSTKENAKKAAKEKEDKKENGELLENVSLETTLFDRLLSMHGPGIKRMLTTQYRM 503
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGS- 521
++ I + S E+Y L+++ +V LL D P+ V+ T T+ PL+ DT+ P +
Sbjct: 504 HEKIMQFPSDELYDSKLMAADSVKDRLLKDLPYEVEETDDTKEPLVFWDTQGGDFPEKTE 563
Query: 522 -LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV----QH 576
LG + HL + + N+ EA +V HV +L+ AG+ P IAV +PY Q+ Q
Sbjct: 564 DADLGKKAHLGESKS----NDMEALVVSRHVDALVDAGIHPEDIAVITPYNGQLAVLSQM 619
Query: 577 LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
LRE+ +E+ ++D FQGRE +AV++S+VRSN+ VGFLG+ RR+NVA+TR
Sbjct: 620 LREKY------PSIELGSVDGFQGREKEAVVVSLVRSNSEHEVGFLGERRRLNVAMTRPK 673
Query: 637 KHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
+H+ + DS TI + FL R + + +++ + G
Sbjct: 674 RHLCICGDSETISKGSGFLKRWMAFLEEHADLRYPDAGDL 713
>gi|254580966|ref|XP_002496468.1| ZYRO0D00770p [Zygosaccharomyces rouxii]
gi|238939360|emb|CAR27535.1| ZYRO0D00770p [Zygosaccharomyces rouxii]
Length = 655
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 192/678 (28%), Positives = 328/678 (48%), Gaps = 100/678 (14%)
Query: 14 DEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTIC 73
D+F +S ERD ++ T+ LN++P + LV G A I
Sbjct: 5 DQFLNSISH----ERDQDVNQTERLLNSLP-----------LTKLVKAGYA-------IT 42
Query: 74 NLFVVSTSTGLGG-MHLVLFRVEG-NHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFV 131
NL + + TGLGG ++L L + + + GD+V + S+ + C G V
Sbjct: 43 NLNLENLRTGLGGKIYLELGPDNAIDQEIARGDVKVGDIVIIAPVKSKFKDESRC-NGVV 101
Query: 132 HNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGL 191
+ +S+ ES + KL+ + + + +T+TY+R ++ L++
Sbjct: 102 FKMSSQQLVVSIE-ESMEEEAV--KLYSSRLYVLKT---TNTITYQRMESSMRKLKE--- 152
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
+ +L G+ LE + ++ +D Q++AI L+ +
Sbjct: 153 ---------IESLKGNSIVQYLLEGKPFHASAPDPKVKFHNESLNDPQRQAIRFSLSNE- 202
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV--GLNIVRV 309
+ II GPPGTGKT L E+I + V++G+RVLV P+N +VD ++E+LS V G +++R+
Sbjct: 203 -ISIIHGPPGTGKTYTLVELIQQLVERGQRVLVCGPSNVSVDTILERLSKVLPGTSLIRI 261
Query: 310 GNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIR----- 364
G+PAR+ + SL + K+ A + + D+ K++ Q + +
Sbjct: 262 GHPARLLEKNLTHSLDVLSKTGDAGAIVK------DISKEIDQTIASIKKSRSFHDRREG 315
Query: 365 -QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGK-------- 415
+ +K L K L+ +E++ + +++ ++V++AT G++ + L T++ + K
Sbjct: 316 WKTVKDLRKELRLRERKVINDLIMESKVIVATLHGSSSKEL--LSTYNAIPKLFDTLIID 373
Query: 416 -----------------------RCILAGDQCQLAPVILSR--KALEGGIGVSLLERAAT 450
+ +LAGD QL P I + K ++ +G +L +R
Sbjct: 374 EVSQSLEPQCWIPLISHKQSNIGKLVLAGDNKQLPPTIKTEDDKKVQKLLGTTLFDRLIK 433
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
+ LT QYRMN+ I S+AS+EMY G LI+ +VA+ L D P V T+ PL
Sbjct: 434 QYGDSFKQLLTIQYRMNEEIMSFASQEMYDGKLIADKSVATQRLTDLPGVDVNEDTEAPL 493
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ DT+ S +E + S +NE EA ++ H+ L+ + V AI V SPY
Sbjct: 494 IWYDTQGDDFPESSNEDEEI----AASRFNENEALLLEDHISKLVGSNVPQDAIGVISPY 549
Query: 571 VAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
AQV +++ + + + VE++T+D FQGRE + +I+S+VRSN VGFL D RR+NV
Sbjct: 550 SAQVGIIKKLIHE--KYPQVEISTVDGFQGREKEVIILSLVRSNDTFEVGFLKDDRRLNV 607
Query: 631 AITRACKHVAVVCDSSTI 648
AITR K + +V + T+
Sbjct: 608 AITRPKKQLCIVGNMETL 625
>gi|350633858|gb|EHA22222.1| DNA helicase [Aspergillus niger ATCC 1015]
Length = 721
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 177/580 (30%), Positives = 290/580 (50%), Gaps = 96/580 (16%)
Query: 156 KLFGKSVRIDRIQGLADTLTYERNCEAL--MLLQKNGLHKRNPSIAAVVTLFGDKEDVTW 213
+L+G+ V + + LA+ +TY R + + M+ H +A FG +
Sbjct: 177 ELWGRKVWMIK---LANDVTYRRMNQTMEKMVKMAESEHTHFMRVA-----FGHTSPM-- 226
Query: 214 LEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA 273
L D+ + T +DSQK+AI L R + +I GPPGTGKT L E+I
Sbjct: 227 -----LPDYDSIGALEFTDPTLNDSQKEAIRFAL-AAREIALIHGPPGTGKTHTLIELIV 280
Query: 274 RAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLA 333
+ VQ+ +RVLV P+N +VDN+VE+L+ + +VR+G+PAR+ P+V SL + + A
Sbjct: 281 QMVQRKQRVLVCGPSNISVDNIVERLAPKKVPVVRIGHPARLLPSVLDHSLEVLTHTSEA 340
Query: 334 SFVA-----EFERKKSDLRKDL----RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE 384
+ + E ++K++ +RK R+ + DD + +++E + V+
Sbjct: 341 AAIVRDVRKEIDQKQASIRKTRAARERRAIYDDLREL---------RREFRERENKCVEN 391
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
++ + VVLAT GA ++ FD+V + +LAGD Q
Sbjct: 392 LVRESSVVLATLHGAGGHQLKN-QKFDVVIIDEASQALEAQCWIPLLSASKVVLAGDHLQ 450
Query: 426 LAPVILSR------------------KALEG-GIGVSLLERAATLHEGVLATKLTTQYRM 466
L P + S + LE + +L +R ++H + LTTQYRM
Sbjct: 451 LPPTVKSTKENAKKAAKEKEDKKENGELLENVSLETTLFDRLLSMHGPGIKRMLTTQYRM 510
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGS- 521
++ I + S E+Y L+++ +V LL D P+ V+ T T+ PL+ DT+ P +
Sbjct: 511 HEKIMQFPSDELYDSKLMAADSVKDRLLKDLPYEVEETDDTKEPLVFWDTQGGDFPEKTE 570
Query: 522 -LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV----QH 576
LG + HL + + N+ EA +V HV +L+ AG+ P IAV +PY Q+ Q
Sbjct: 571 DADLGKKAHLGESKS----NDMEALVVSRHVDALVDAGIHPEDIAVITPYNGQLAVLSQM 626
Query: 577 LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
LRE+ +E+ ++D FQGRE +AV++S+VRSN+ VGFLG+ RR+NVA+TR
Sbjct: 627 LREKY------PSIELGSVDGFQGREKEAVVVSLVRSNSEHEVGFLGERRRLNVAMTRPK 680
Query: 637 KHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
+H+ + DS TI + FL R + + +++ + G
Sbjct: 681 RHLCICGDSETISKGSGFLKRWMAFLEEHADLRYPDAGDL 720
>gi|345567575|gb|EGX50505.1| hypothetical protein AOL_s00075g234 [Arthrobotrys oligospora ATCC
24927]
Length = 650
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 244/462 (52%), Gaps = 52/462 (11%)
Query: 223 SEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERV 282
SE++LD + ++ QK+A++ L + L +I GPPGTGKT L EII + V + ++
Sbjct: 191 SEIRLD-FFDEQLNEVQKEAVSFAL-EATDLALIHGPPGTGKTQTLIEIIRQLVARDLKI 248
Query: 283 LVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
LV P+N +VDN+ +KL + +VR+G+PAR+ P+V S SL +K + RK
Sbjct: 249 LVCGPSNISVDNIADKLGPFRIPMVRIGHPARLLPSVISTSLDVAIKYSSGGMLVNDIRK 308
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
+ D + + + ++ + + + ++ L K K +E+ +++++ ++++VL+T GA
Sbjct: 309 EMDEKLNNSKKTRNGTERRKLWEDIRDLRKECKVRERRCIEDIVRASKIVLSTLHGAGGR 368
Query: 403 LIRRLDTFDLV--------------------GKRCILAGDQCQLAPVI------LSRKAL 436
I R FD+V +CILAGD QL P I S + L
Sbjct: 369 DIIR-QNFDVVIIDEAGQALEAQSLIPLARGPSKCILAGDHLQLPPTIPRTDKTSSLRKL 427
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
E +SL ER LH ++ L+ QYRM++ I + S +Y L++ +V SHLL D
Sbjct: 428 E----LSLFERLIKLHGPLIKRTLSVQYRMHEMIMKYPSIGLYDSLLLADVSVRSHLLSD 483
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
P V T TQ PL+ DT P+G D S N EAE
Sbjct: 484 LPNVIKTDETQEPLVFWDTN-PHGGFG-----EDDTGAHESKSNAMEAE----------- 526
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERL-DDLPEA-AGVEVATIDSFQGREADAVIISMVRSN 614
AGV P IA+ +PY AQV L + + P+A + +E+ ++D FQGRE +A+++S+VRSN
Sbjct: 527 AGVQPKDIAIITPYNAQVALLSGLIKSEFPDAFSEIEIGSVDGFQGREKEAILLSLVRSN 586
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLAR 656
VGFL D RR+NVA+TR +H+ V+ DS T+ + +
Sbjct: 587 EKKEVGFLADERRLNVAMTRPRRHLCVIGDSGTVARGSVFLK 628
>gi|408674036|ref|YP_006873784.1| AAA ATPase [Emticicia oligotrophica DSM 17448]
gi|387855660|gb|AFK03757.1| AAA ATPase [Emticicia oligotrophica DSM 17448]
Length = 634
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 156/477 (32%), Positives = 241/477 (50%), Gaps = 81/477 (16%)
Query: 235 FDDSQKKAIALGLNK---KRPLLIIQGPPGTGKTGLLKEIIARAVQQGER---VLVTAPT 288
+DSQ A LNK L I+ GPPGTGKT L + I ++Q +LV AP+
Sbjct: 178 LNDSQNNA----LNKIISANELAIVHGPPGTGKTTTLVQTIKTIIKQENAKTPILVVAPS 233
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG------EIVKS---------KLA 333
N AVD + EKLS+ GLN++R+GNPAR+S + + +L +++K+ +
Sbjct: 234 NTAVDLLSEKLSEEGLNVLRIGNPARVSERLMALTLDNKMTDHQLMKNAKTLKKQANEYR 293
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+ +++R +D R+ L D++ +++K++G E+ + +V++ Q++
Sbjct: 294 NMAHKYKRSFGKAERDQRKLLFDEA-----HKIMKEVGNI----EQYVIDDVVTKTQIIT 344
Query: 394 ATNTGAADPLIRRLDTFDLV------------------GKRCILAGDQCQLAPVILSRKA 435
AT GA IR L ++ ++ I AGD CQL P I S +A
Sbjct: 345 ATLVGANHYTIRNLSFHTVIIDEAGQALEPACWIPILKAQKVIFAGDHCQLPPTIKSNEA 404
Query: 436 LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV 495
+ G+ +LLE+ LH + T L QYRMN+ I + +SK Y L + ++VA L
Sbjct: 405 AKNGLNTTLLEKCVALHPEAV-TLLEEQYRMNEQIMAHSSKVFYNNQLKAHASVAKQTL- 462
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI 555
++ + PL +DT GC L GT S N EA +V H+ +
Sbjct: 463 --------FVDEKPLHFIDT--------AGCSFDEKLEGTSS-TNPDEAAFLVKHLNGFV 505
Query: 556 ------CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA----GVEVATIDSFQGREADA 605
+ + +IAV SPY Q+ L+E+++ PE + V TIDSFQG+E D
Sbjct: 506 EELKKKFSTANFPSIAVISPYKQQISILKEQVEHAPELKEVLNNISVNTIDSFQGQERDI 565
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
V IS+ RSN GA+GFL D RRMNVA+TRA K + V+ DS+T+ + F + + +
Sbjct: 566 VYISLTRSNAEGAIGFLSDIRRMNVAMTRARKKLIVIGDSATLSSSNFYEEFISYTQ 622
>gi|11498984|ref|NP_070217.1| DNA helicase [Archaeoglobus fulgidus DSM 4304]
gi|2649188|gb|AAB89860.1| DNA helicase, putative [Archaeoglobus fulgidus DSM 4304]
Length = 648
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 202/656 (30%), Positives = 313/656 (47%), Gaps = 122/656 (18%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV + G + T +S GD V + SRG S ++G V G T+S L
Sbjct: 55 GFKLVRY---GRRKAIETEISVGDEVLI----SRGDPLKSDLRGVVVEKGSRYLTVS--L 105
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
ES P ++ +R RI A LT++R E L L +NG KR A
Sbjct: 106 ES---VPEWA------LRDVRIDLYASDLTFKRWIENLENLTENG--KRALKFA------ 148
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
LEE + + K + + +Q KA+ ++ +I GP GTGKT
Sbjct: 149 ------LGLEEPSKTECEDFK---PFDSSLNRAQLKAVGCAVSTD-DFFLIHGPFGTGKT 198
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
+ E++ + V++GERVLVTA +N AVDN+VE LSD + IVR+G+P+R+ + +L
Sbjct: 199 RTVVEVVRQLVKRGERVLVTAESNTAVDNLVELLSD--MKIVRLGHPSRVEKRLKEHTLA 256
Query: 326 EIVKS--------KLASFVAEFERKKSDLRK---DLRQCLKDDSL---------AAGI-- 363
+V + ++ + E ER+ L K LR+ L D+ + A G+
Sbjct: 257 SLVLNHPDYKRIEEIKGKIEEIERRMERLTKPSPQLRRGLSDEEILRLARSNRGARGVAA 316
Query: 364 ------------RQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
R+ L QL +K++E+ VKE++ + VV++TN+ A L+ ++FD
Sbjct: 317 KKIRSMAEWIEARKALDQLYTEMKEEEERIVKEIIEESDVVISTNSSAF--LLE--ESFD 372
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ ILAGD QL P ++ + L +L E+ L+
Sbjct: 373 TAVIDEASQATIPSVLIPINRARKFILAGDHRQLPPTVMKAEKL----SETLFEKLIELY 428
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC---- 508
+ L QYRMN+ + + S+E YGG +++ + + L + + +
Sbjct: 429 PEK-SQLLNVQYRMNEKLMEFPSREFYGGRIVAHESCTAIALSQIAKREAEKLREILGDE 487
Query: 509 PLLLLDTRLPYGSLSLGCEEHLD--LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAV 566
PL+ +DT C+ + LA + S YN EAEIV V L+ G+ I V
Sbjct: 488 PLVFIDTS--------KCKNRWEGKLADSTSRYNRLEAEIVTEIVTELLKMGLKKEQIGV 539
Query: 567 QSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
+PY QV LRE++D VEV+++D FQGRE + +IIS VRSN +GFL D R
Sbjct: 540 ITPYDDQVDLLREKVD-------VEVSSVDGFQGREKEVIIISFVRSNRKREIGFLDDLR 592
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG-RVKHAEPGSFGGSGLG 681
R+NV++TRA + + +V DS T+ N ARL+ H++ G V+ + G GG+ G
Sbjct: 593 RLNVSLTRARRKLIMVGDSETLSVNGTYARLIDHVKRKGVYVELDKNGKLGGNPKG 648
>gi|325104103|ref|YP_004273757.1| ATPase AAA [Pedobacter saltans DSM 12145]
gi|324972951|gb|ADY51935.1| AAA ATPase [Pedobacter saltans DSM 12145]
Length = 629
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 248/482 (51%), Gaps = 70/482 (14%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII-ARAVQQGERVLVTAP 287
G + +DSQ +A+ L + L I+ GPPGTGKT L E I A +Q G+++LVTAP
Sbjct: 172 GYISSRLNDSQNQAVNSIL-AAQELAILHGPPGTGKTTTLVEAISALYMQSGKQILVTAP 230
Query: 288 TNAAVDNMVEKLSDVGLNIVRVGNPARISPAVA-------------SKSLGEIVK--SKL 332
+N AVD + KL++ G+N++R+GNP R+S + +K + ++ K ++
Sbjct: 231 SNTAVDLLTLKLAEKGVNVIRIGNPIRVSQKLEELTLDYKINQHQYNKEIKQLKKQAAEY 290
Query: 333 ASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVV 392
+ +++R L ++ R+ L D++ +LLKQ+ +T E +++L+ AQV+
Sbjct: 291 RNMAHKYKRSFGKLEREQRKALFDEA-----HKLLKQVEQT----ESFISEDLLNKAQVI 341
Query: 393 LATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSR 433
AT G + I+ D +D+V ++ I AGD QL P + S+
Sbjct: 342 TATLVGVNNYAIKDRD-YDIVVIDEAAQALEPACWIPVLRSRKVIFAGDHLQLPPTVKSK 400
Query: 434 KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
+A + G+ +LLE+ H ++ LTTQYRMN I + S E+Y L + +VA+
Sbjct: 401 EAEKLGLSSTLLEKNMGFHPEAVSL-LTTQYRMNKEINDYPSIELYESKLHADRSVATRK 459
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFS 553
L P+ +DT GC + GT S YN EA + H+
Sbjct: 460 LDQK---------DIPVEFVDT--------AGCSFDEKINGT-SVYNPEEANFTLKHLTG 501
Query: 554 LI-CAGVSPSAIAVQSPYVAQVQHLRERLDDL----PEAAGVEVATIDSFQGREADAVII 608
L+ + ++AV SPY QV+ L+E ++D P A +++ TIDSFQG+E D V I
Sbjct: 502 LLQNHNKAKYSVAVISPYKQQVELLKELIEDWEDLKPFLAQIDINTIDSFQGQERDIVYI 561
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVK 668
S+ RSN+ A+GFL D RRMNVAITRA + V+ DS T+ N F + + + K
Sbjct: 562 SLTRSNSENAIGFLSDIRRMNVAITRARMKLVVIGDSGTLSKNAFYSDFISYTEKINGYK 621
Query: 669 HA 670
A
Sbjct: 622 SA 623
>gi|71895701|ref|NP_001026346.1| immunoglobulin mu binding protein 2 [Gallus gallus]
gi|53136864|emb|CAG32761.1| hypothetical protein RCJMB04_35d21 [Gallus gallus]
Length = 742
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 138/310 (44%), Positives = 179/310 (57%), Gaps = 35/310 (11%)
Query: 385 VLSSAQVVLATNTGAA-DPLIRRL--DTFDLV-------------------GKRCILAGD 422
L+ A VVLATNTGA+ D ++ L + FDLV +CILAGD
Sbjct: 4 ALTHASVVLATNTGASSDGPLKLLPENYFDLVVIDECAQALEASCWIPLLKAPKCILAGD 63
Query: 423 QCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
QL P I+S KA G+ +SL+ER + + LT QYRM++AI WAS EMYGG
Sbjct: 64 HKQLPPTIISHKAAAKGLSLSLMERVIERYGEKVVKMLTVQYRMHEAIMQWASSEMYGGR 123
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE-HLDLAGTGSFYNE 541
L + +VA HLL D P V T T PLLL+DT GC L++ S N
Sbjct: 124 LTAHPSVAQHLLKDLPGVTCTEETTIPLLLIDT--------AGCGLLELEVEDEQSKGNP 175
Query: 542 GEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQG 600
GE ++V H+ +L+ AGV +AV +PY QV LRE L PE +E+ ++D FQG
Sbjct: 176 GEVQLVGLHIQALVDAGVKARDVAVVAPYNLQVDMLREHLCHRYPE---LEIKSVDGFQG 232
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
RE +AVI+S VRSN G VGFL + RR+NVA+TRA +HVA++CDS T+ FL RLL H
Sbjct: 233 REKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAIICDSRTVGSQAFLGRLLEH 292
Query: 661 IRYFGRVKHA 670
R G+V+ A
Sbjct: 293 FRQHGQVRTA 302
>gi|363750954|ref|XP_003645694.1| hypothetical protein Ecym_3390 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889328|gb|AET38877.1| Hypothetical protein Ecym_3390 [Eremothecium cymbalariae
DBVPG#7215]
Length = 663
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 198/667 (29%), Positives = 334/667 (50%), Gaps = 81/667 (12%)
Query: 54 PIEFLVSHGRAPQELCDTICNLFVVSTSTGLGG-MHLVLFRVEG-NHRLPPTTLSPGDMV 111
P+ LVS G A + +L + + TGLGG ++L L ++ + S GD+V
Sbjct: 32 PLSKLVSAGLA-------VNHLQLENVRTGLGGKVYLDLTPDPAIDNVISVGETSVGDIV 84
Query: 112 CVRVCDSRGAC-ATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGL 170
+ S G + ++G V + +SV ES+ D KL+ S +
Sbjct: 85 KIYSSKSVGKKDEAAALEGVVFKSNDKQIVVSVD-ESKESDAF--KLYEASKLY--LVKT 139
Query: 171 ADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGI 230
A+++TY+R + L + + P+ + + L ++ ++E+ D + S
Sbjct: 140 ANSITYKRMQSTMRKLAE---IEGTPNNSIIQYLLCQRQ---FVEQKDSIEIS------F 187
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ +DSQKKAI L + + II GPPGTGKT L E+I + V+QG+R+L+ P+N
Sbjct: 188 HNQNLNDSQKKAIKFALQNE--ISIIHGPPGTGKTYTLVELIMQLVKQGQRILICGPSNI 245
Query: 291 AVDNMVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVKSKLA-SFVAEFERKKSDLR 347
+VD ++E+L+ V G ++R G+PAR+ P+ + S+ I KS A S + + + ++
Sbjct: 246 SVDTILERLAKVIPGNLLLRFGHPARLLPSTLAHSIDVISKSGDAGSIIRDINQ---EIN 302
Query: 348 KDLRQCLKDDSLAAGIR--QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIR 405
L Q K S + Q +K L K LK++E+ + E++ +A+VV+ T G++ +
Sbjct: 303 NHLLQIKKFKSYRDRKKAWQEIKDLRKELKQRERRVISELILAAKVVVCTLHGSSSGNLC 362
Query: 406 RLDTF----------DLVGK-------------------RCILAGDQCQLAPVILSR--K 434
R+ F D V + + ++AGD QL P I + +
Sbjct: 363 RVYDFEPKLFNTLIIDEVSQSLEPQCWIPLISHYKSNISKLVIAGDNKQLPPTIKTEDDE 422
Query: 435 ALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL 494
++ +G ++ ++ + L QYRMN+ I + S ++Y LI++ VA L
Sbjct: 423 KVKKILGTTIFDKLENHYGNDFKKLLNVQYRMNEQIMEFPSHQLYKDELIAAEAVAKITL 482
Query: 495 VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH----LDLAGTGSFYNEGEAEIVVHH 550
D P V+ T PLL DT+ G L E LD+A S YNE EA +++H+
Sbjct: 483 ADLPGVEVDDNTSVPLLWFDTQ---GDDFLEKSEEVNGVLDIAS--SKYNENEAYLLIHY 537
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
V L+ + VS +I + SPY AQV LR+ + + + + +E++++D FQGRE D +I+S+
Sbjct: 538 VSQLLNSNVSQESIGIISPYNAQVSLLRKLVHE--KYSLIEISSVDGFQGREKDCIILSL 595
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT--FLARLLRHIRYFGRVK 668
VRSN L VGFL D RR+NVA+TRA + + V+ + T+ + FL +R ++
Sbjct: 596 VRSNDLFEVGFLRDERRLNVAMTRAKRQLCVIGNMETLERSQVPFLKEWVRWSEENSEIR 655
Query: 669 HAEPGSF 675
+ + F
Sbjct: 656 YPDLSDF 662
>gi|378727141|gb|EHY53600.1| hypothetical protein HMPREF1120_01789 [Exophiala dermatitidis
NIH/UT8656]
Length = 715
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 210/729 (28%), Positives = 334/729 (45%), Gaps = 127/729 (17%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
F + LL IE+DAE+ T L SS P L G A I +L
Sbjct: 16 FLATLISLLSIEQDAEVAETTLLL-----------SSTPPSTLARAGLA-------ILSL 57
Query: 76 FVVSTSTGLGGMHLV-------LFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATS--- 125
+ S TGLGG +V + + LP + GD+V R+ + A
Sbjct: 58 SIQSLKTGLGGRSVVELGLDSAVINKDSKGELPEHGIRTGDIV--RLGEMPKGTAKKKEV 115
Query: 126 ------CIQGFVHNLGEDGCTISVALESRHGDPTF---SKLFGKSVRIDRIQGLADTLTY 176
++G V +GE +++ E D KL+ + LA+ +T+
Sbjct: 116 NELKGKGVEGVVTRVGERAVWVALGKEGGSDDVEAVPDGKLW--------LVKLANDVTF 167
Query: 177 ERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFD 236
+R +AL L K + + TL + + L D + K T +
Sbjct: 168 KRMNQALTKLLK--------TPESSYTLL--QRVLLGLSSPGAPDPQQAKDIVFHDATLN 217
Query: 237 DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMV 296
DSQ+ A+ L+ + +I GPPGTGKT L E+I + ++QG+RVLV P+N +VDN+V
Sbjct: 218 DSQQDAVRFALSSPE-IALIHGPPGTGKTYTLIELILQFLKQGQRVLVCGPSNISVDNIV 276
Query: 297 EKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
E+L+ N IVR+G+PAR+ P+V + SL + ++ A+ + RK+ D ++ +
Sbjct: 277 ERLALTAPNVPIVRLGHPARLLPSVLNHSLEILTRTSEAAEIVSDVRKEMDEKQASIRKT 336
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVG 414
++ I LK+L K +++E + ++ ++VVL+T GA +R + FD++
Sbjct: 337 RNGRERRAIYADLKELRKEYREREGRCIDGLVKGSKVVLSTLHGAGSHQLRN-EQFDVLV 395
Query: 415 -----------------------KRCILAGDQCQLAPVILSR-------------KALEG 438
K+ +LAGD QL P + S K+LE
Sbjct: 396 IDEASQAMEPHCWIPLVFGGNGIKKLVLAGDHLQLPPTVKSADNKDNKADKKAKIKSLED 455
Query: 439 GIG------------------VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYG 480
+ ++ +R +H + L TQYRM++ I + S E+Y
Sbjct: 456 ELAKLSIKDEEIKAAKNWSLETTMFDRLLAIHGSGIKRLLNTQYRMHEKIMRFPSDELYD 515
Query: 481 GSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEE------HLDLA 533
G L+++ V + LL + P+ V+ T T PL+ DT+ G S E+ H +
Sbjct: 516 GKLVAADAVKARLLKELPYEVQATEDTTEPLVFFDTQ--GGDFSEKTEDDSGGQVHKSVL 573
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVA 593
S NE EA + HV LI AGV IA+ +PY AQ+ L L +E+
Sbjct: 574 LGDSKSNETEAAVAAMHVTHLIEAGVKEEDIAIVTPYNAQLAILSSLLKT--RYPNIELG 631
Query: 594 TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT- 652
++D FQGRE +AV++S+VRSN VGFL + RR+NVA+TR +H+ V+ DS T+ +
Sbjct: 632 SVDGFQGREKEAVVVSLVRSNAEQQVGFLAEKRRLNVAMTRPKRHLCVIGDSETVSRGSP 691
Query: 653 FLARLLRHI 661
FL R ++ +
Sbjct: 692 FLKRWMKFL 700
>gi|308805667|ref|XP_003080145.1| putative DNA helicase (ISS) [Ostreococcus tauri]
gi|116058605|emb|CAL54312.1| putative DNA helicase (ISS) [Ostreococcus tauri]
Length = 1305
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 220/699 (31%), Positives = 326/699 (46%), Gaps = 118/699 (16%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+T R LL +ER AE E +E L + A Q + L
Sbjct: 676 WTTRTLGLLELERVAETESAEEILRGLSPA------------------AAQRRGRALLGL 717
Query: 76 FVVSTSTGLGGMHLVLF----RVEGNHR--LPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
GL G ++ R++ +H LPP LSP D+VC+R + G
Sbjct: 718 TATDVRGGLLGQTVITLELAKRIDPSHPTPLPPNRLSPHDVVCLRANKATNE-GEPLASG 776
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V+ + + I +A + D ++R++R L++ T++R A+ + K
Sbjct: 777 VVYRIRD--AQIEIACDDAPDD------LSGTLRLER---LSNEETHKRLVAAVERVGKY 825
Query: 190 G--LHKRNPSIAAVVTLFGDK--------EDVTWLEENDLADWSEVKLDGIMGKTFDDSQ 239
G + P V FGD ++V WL EN D SQ
Sbjct: 826 GGASDAKQPGAHLVGVAFGDSSPRVAKSGKEVKWLNEN-----------------LDSSQ 868
Query: 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299
++AI L + +I GP +A+ V +G RVL +N A+DN+VE+L
Sbjct: 869 REAIEHAL-RCVDFALIHGP----XXXXXXXYVAQEVARGSRVLACTASNIAIDNLVERL 923
Query: 300 SDVGL------NIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQ 352
V L +VRVG+PAR+ P+V SL +++ + + ++ LR+ L +
Sbjct: 924 MRVKLPGGGEMRLVRVGHPARLLPSVLEASLEAQLLACDNSKLAKDCAKESKALRRKLAK 983
Query: 353 CL--KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
KD + +R+ L+ LGK + ++KE +K+V++ A+VV +T +GA ++ D F
Sbjct: 984 LTDRKDRAERNEVRKELRILGKEERARQKEAMKDVVNGARVVCSTLSGALSGTLKFQD-F 1042
Query: 411 DLV---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLT 461
D+V +L G A +LS KA G+ +L +R + ++ LT
Sbjct: 1043 DVVVIDEAAQALEAATVLGGRSPAAASTVLSMKAQAKGLSDTLFQRLHDAYGNTISRMLT 1102
Query: 462 TQYRMNDAIASWASKEMYGGSLISSSTVASHLL----VDTPFVKPTWITQCPLLLLDTRL 517
QYRM+ I +W+S+ MY G L ++ +VA+H L D P V LLL+DT
Sbjct: 1103 VQYRMHADIMTWSSEAMYQGKLTAAESVATHRLRGDGEDDPPV---------LLLIDT-- 1151
Query: 518 PYGSLSLGC--EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSP-SAIAVQSPYVAQV 574
GC EE ++ G S N GEAE+VV V L+ P I V +PY QV
Sbjct: 1152 ------AGCDMEERVEEDGE-SKENPGEAEVVVEVVRRLVSQHEVPVDEIGVITPYNGQV 1204
Query: 575 QHLRE---RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
LRE R D L +E++T+D FQGRE +A+IIS VRSNT G VGFL DSRRMNVA
Sbjct: 1205 TLLRELRARDDALK---NLEISTVDGFQGREKEAIIISAVRSNTRGEVGFLSDSRRMNVA 1261
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+TRA KH ++ DS T +TFLA L+ + G V A
Sbjct: 1262 VTRARKHCCLIIDSDTSRSDTFLANLVEYFESHGDVASA 1300
>gi|70988781|ref|XP_749245.1| DNA helicase [Aspergillus fumigatus Af293]
gi|66846876|gb|EAL87207.1| DNA helicase, putative [Aspergillus fumigatus Af293]
Length = 730
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 165/499 (33%), Positives = 257/499 (51%), Gaps = 71/499 (14%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +DSQK+AI L R + +I GPPGTGKT L E+I + V++ RVLV P+N +VD
Sbjct: 245 TLNDSQKEAIRFAL-AARDVALIHGPPGTGKTHTLIELILQMVKRKLRVLVCGPSNISVD 303
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV-----AEFERKKSDLRK 348
N+VE+L+ G+ +VR+G+PAR+ P+V SL + + A+ + E + K++ +RK
Sbjct: 304 NIVERLAPNGVPVVRIGHPARLLPSVLEHSLEVLTHTSEAAAIIKDVRKEIDEKQASIRK 363
Query: 349 DL----RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI 404
R+ + DD LK+L + +++E V ++ + VVLAT GA +
Sbjct: 364 TRTGRERRAIYDD---------LKELRREFRERESRCVDNLVRESNVVLATLHGAGGHQL 414
Query: 405 RRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKAL--------- 436
+ FD+V + +LAGD QL P + S
Sbjct: 415 KN-QKFDVVVIDEASQALEAQCWIPLLSASKVVLAGDHLQLPPTVKSSVDKLKNTKKKEK 473
Query: 437 ---------------EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGG 481
+ + +L +R +LH + LTTQYRM++ I + S E+Y
Sbjct: 474 SDTKDASANSAEIIGDFSLETTLFDRLLSLHGPGIKRMLTTQYRMHEKIMQFPSDELYES 533
Query: 482 SLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGS 537
L+++ TV S LL D P+ V+ T T+ P++ DT+ P + + L G S
Sbjct: 534 KLVAAETVKSRLLKDLPYEVEETDDTREPIVFWDTQGGDFPEKTEDDDVGKKEALLGE-S 592
Query: 538 FYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDS 597
NE EA +V HV +LI AGV P IA +PY Q+ L L + + G+E+ ++D
Sbjct: 593 KSNEMEALVVAKHVQNLIQAGVKPEDIACITPYNGQLSLLSSMLRE--KYPGLELGSVDG 650
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLAR 656
FQGRE +AV++S+VRSN+ VGFLG+ RR+NVA+TR +H+ + DS TI + FL R
Sbjct: 651 FQGREKEAVVVSLVRSNSEHEVGFLGEKRRLNVAMTRPKRHLCICGDSETISKGSAFLKR 710
Query: 657 LLRHIRYFGRVKHAEPGSF 675
+ + +++ + G
Sbjct: 711 WMAFLEEHADLRYPDAGEL 729
>gi|436833526|ref|YP_007318742.1| AAA ATPase [Fibrella aestuarina BUZ 2]
gi|384064939|emb|CCG98149.1| AAA ATPase [Fibrella aestuarina BUZ 2]
Length = 632
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 238/463 (51%), Gaps = 74/463 (15%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
L I+ GPPGTGKT L + I ++Q +++LV AP+N AVD + EKL D GLN++R+GN
Sbjct: 195 LAIVHGPPGTGKTTTLIQAIKALIKQDRQKLLVVAPSNTAVDLLSEKLHDEGLNVLRIGN 254
Query: 312 PARISPAVASKSLGEIVKS---------------KLASFVAEFERKKSDLRKDLRQCLKD 356
PAR+S + + +L V + + + +++R ++ R+ L D
Sbjct: 255 PARVSERLMALTLDHKVSTHPHMNAAKKLKKQANEFRTMAHKYKRNFGKAEREQRKALFD 314
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--- 413
++ +LLK +G+ E+ + +++++AQVV AT GA + +R L +V
Sbjct: 315 EA-----HRLLKDVGQA----EQYVIDDLIANAQVVTATLVGANNYTVRDLTYHTVVIDE 365
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
++ +LAGD CQL P I S +A G+G +LLE+ LH + T
Sbjct: 366 AGQALEPACWIPILKAQKVVLAGDHCQLPPTIKSAEAARNGLGTTLLEKCVALHPEAV-T 424
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRM++ I ++S+ Y + + +VA H L + L +DT
Sbjct: 425 LLNEQYRMHEHIMGYSSQVFYDNQVKAHPSVARHAL---------FADDTALAFVDT--- 472
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI-------CAGVSPSAIAVQSPYV 571
G +E LD GT S N EA +++ H+ L+ G P+ IAV SPY
Sbjct: 473 ---AGCGFDEKLD--GTSS-TNPDEAALLIRHLTQLVGDLSQRYSLGTFPT-IAVISPYK 525
Query: 572 AQVQHLRERLDDLPE----AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
Q+ L E+L + PE + + V TIDSFQG+E D V IS+VRSNT G +GFL D RR
Sbjct: 526 QQINVLTEQLKNSPELQPYSGHISVNTIDSFQGQERDIVYISLVRSNTEGDIGFLSDIRR 585
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
MNVA+TRA K + + DS+T+ F + + + G + A
Sbjct: 586 MNVAMTRARKKLVIFGDSATLASLPFYSDFITYAEALGTYQSA 628
>gi|255711959|ref|XP_002552262.1| KLTH0C00770p [Lachancea thermotolerans]
gi|238933641|emb|CAR21824.1| KLTH0C00770p [Lachancea thermotolerans CBS 6340]
Length = 659
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 156/462 (33%), Positives = 247/462 (53%), Gaps = 69/462 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+ SQKKAI L + + II GPPGTGKT + E++ + +G+RVLV P+N AVD
Sbjct: 189 LNTSQKKAIEFSLQNR--ISIIHGPPGTGKTHTVVELVHQLYNKGQRVLVCGPSNIAVDT 246
Query: 295 MVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
++E+L+ V G +++R+G+PAR+ + S SL + KS A + + D+ K++
Sbjct: 247 ILERLAKVMPGESLLRIGHPARLLESNLSHSLEVLSKSGDAGAITK------DISKEI-- 298
Query: 353 CLKDDSLAAGIRQL------------LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA 400
DD++A+ I++L +++L K LK +EK+ + +++ SA+VV++T G++
Sbjct: 299 ---DDTIAS-IKKLKSYKQRKEQWKEVRELRKELKLREKKVISDLVLSARVVVSTLHGSS 354
Query: 401 D--------------------------------PLIRRLDTFDLVGKRCILAGDQCQLAP 428
PLI + D+ ++ +LAGD QL P
Sbjct: 355 ARELVDCYKHTDHIFDTLIIDEVSQSLEPQCWIPLIAHYKS-DI--QKLVLAGDDKQLPP 411
Query: 429 VILSRK--ALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISS 486
I + ++ +G +L +R + L TQYRMN I ++S +MY G L ++
Sbjct: 412 TIKTEDNTKVKNTLGTTLFDRLVKKYGDSFRNLLDTQYRMNSEIMEFSSIKMYDGKLKAA 471
Query: 487 STVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEI 546
+VAS LVD P + T+ PL+ DT+ G E+ + S YNE EA +
Sbjct: 472 DSVASWTLVDLPATECNENTEVPLIWYDTQA--GDFPERAEDQDSGSLVSSKYNENEAFL 529
Query: 547 VVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAV 606
+HHV SLI + V I + SPY AQV L++ + P+ VE++T+D FQGRE + +
Sbjct: 530 ALHHVTSLIDSNVPQECIGIISPYNAQVAFLKKTVH--PQYPLVEISTVDGFQGREKEVI 587
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
I+S+VRSN VGFL D RR+NVA+TR K + V+ + T+
Sbjct: 588 ILSLVRSNDKFEVGFLSDQRRLNVAMTRPKKQLCVIGNMETL 629
>gi|261204485|ref|XP_002629456.1| DNA helicase [Ajellomyces dermatitidis SLH14081]
gi|239587241|gb|EEQ69884.1| DNA helicase [Ajellomyces dermatitidis SLH14081]
gi|239614217|gb|EEQ91204.1| DNA helicase [Ajellomyces dermatitidis ER-3]
gi|327353693|gb|EGE82550.1| hypothetical protein BDDG_05494 [Ajellomyces dermatitidis ATCC
18188]
Length = 755
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 208/720 (28%), Positives = 330/720 (45%), Gaps = 147/720 (20%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG----------------------NHRLPPTTLSPGD 109
+ L +V+T TG+GG + F V+ RL + GD
Sbjct: 64 LTGLVLVNTRTGMGGREVGEFGVDSAIGSGARGGKDGEGAGGGGDGGAERLGAHGMRVGD 123
Query: 110 MVCVRVCD-------------SRGACATS-----CIQGFVHNLGEDGCTI-----SVALE 146
+ VRV D ++GA ++G V +GE + A
Sbjct: 124 I--VRVEDVAAGARGGAGSGRAKGAKEEEGRKGRALEGVVTRVGERSVWVAFGGQGGAAG 181
Query: 147 SRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFG 206
+ + L+GK V + + LA+ +TY R + M +N VV FG
Sbjct: 182 KGRDEESVEDLWGKKVWMVK---LANDVTY-RRMKQTMTKMENMTESDYTYFMRVV--FG 235
Query: 207 DKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTG 266
T DL+ ++ + T +DSQ++A+ L R + +I GPPGTGKT
Sbjct: 236 H----TAPSPVDLSSLGTIEF---IDSTLNDSQREAVRFAL-ASREIALIHGPPGTGKTY 287
Query: 267 LLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGE 326
L E+I + ++Q R+LV P+N +VDN+VE+L+ + +VR+G+PAR+ V SL
Sbjct: 288 TLIELILQLLRQNLRILVCGPSNVSVDNIVERLAPHKVPLVRIGHPARLLSTVLDHSLEV 347
Query: 327 IVKSKLASFVA-----EFERKKSDLRK-----DLRQCLKDDSLAAGIRQLLKQLGKTLKK 376
++++ A+ + + E K++ +RK + R+ +D LK+L K ++
Sbjct: 348 LIQTSDAAAIVKDVRKDIETKQASIRKTRSGRERREIYRD----------LKELRKEFRE 397
Query: 377 KEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRC 417
+E + V +++ ++VVLAT GA +R FD+V +
Sbjct: 398 RESKCVGNLVTESKVVLATLHGAGGHQLRN-QKFDVVIIDEASQALEAQCWVPLLSASKA 456
Query: 418 ILAGDQCQLAPVILSRKALEGG----------------------IG-----------VSL 444
ILAGD QL P I S + G IG ++L
Sbjct: 457 ILAGDHLQLPPTIKSVTSKSSGTVGNGMSASDEISAPNADKGNNIGQHKATKKATLEMTL 516
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPT 503
+R +LH + LTTQYRM++ I + S+E+Y LI++ V LL D P+ V+ +
Sbjct: 517 FDRLLSLHGPAIKRMLTTQYRMHEKIMQFPSQELYEAKLIAADAVKLRLLKDLPYEVEES 576
Query: 504 WITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG-------SFYNEGEAEIVVHHVFSLIC 556
T+ PL+ DT+ G EE + A S N+ EA +V HV +L+
Sbjct: 577 DDTREPLVFYDTQ--GGDFPERAEEPVVAAKQKQISMFVESKSNDLEAVLVGRHVENLVA 634
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
GV P IAV +PY AQ+ L L D + G+E+ ++D FQGRE +AV++S+VRSN
Sbjct: 635 TGVKPEDIAVVTPYNAQLALLSNMLKD--KYPGLELGSVDGFQGREKEAVVVSLVRSNPE 692
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
VGFL + RR+NVA+TR +H+ V DS TI + FL R + + +++ + G +
Sbjct: 693 HEVGFLAEKRRLNVAMTRPKRHLCVCGDSETIRRGSQFLRRWMDFLEENADLRYPDAGDY 752
>gi|121711100|ref|XP_001273166.1| DNA helicase, putative [Aspergillus clavatus NRRL 1]
gi|119401316|gb|EAW11740.1| DNA helicase, putative [Aspergillus clavatus NRRL 1]
Length = 760
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 160/469 (34%), Positives = 244/469 (52%), Gaps = 54/469 (11%)
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
I T +DSQK+AI L R + +I GPPGTGKT L E+I + V++ RVLV P+N
Sbjct: 241 ITDPTLNDSQKEAIRFAL-ASRDVALIHGPPGTGKTHTLIELIIQMVKRKLRVLVCGPSN 299
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD 349
+VDN+VE+L+ + IVR+G+PAR+ P+V SL + + A+ + + RK+ D ++
Sbjct: 300 ISVDNIVERLALKKVPIVRIGHPARLLPSVLEHSLEVLTHTSEAAAIVKDVRKEIDEKQA 359
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
+ K I LK+L + + +E + V ++ + VVLAT GA ++
Sbjct: 360 SIRKTKSGRERRAIYGDLKELRREYRDRESKCVDNLVRESSVVLATLHGAGGHQLKN-QK 418
Query: 410 FDLV-------------------GKRCILAGDQCQLAPVI-------------------- 430
FD+V + +LAGD QL P +
Sbjct: 419 FDVVVIDEASQALEAQCWISLLSASKVVLAGDHLQLPPTVKSTVQKSKSAKTKGQSNTKS 478
Query: 431 ----LSRKALEGGIGV--SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI 484
S + GG+ + ++ +R LH + LTTQYRM++ I + S E+Y LI
Sbjct: 479 GSTDASDADIIGGVSLETTMFDRLLALHGPGIKRMLTTQYRMHEKIMQFPSDELYESRLI 538
Query: 485 SSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYN 540
++ +V LL D P+ V+ T T+ PL+ DT+ P + + L G S N
Sbjct: 539 AADSVKLRLLKDLPYEVEETDDTKEPLVFWDTQGGDFPEKTEDDEIGKKEALLGE-SKSN 597
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQG 600
E EA +VV HV +LI +GV P IA +PY Q+ L L + + G+E+ ++D FQG
Sbjct: 598 EMEALVVVKHVDNLIQSGVRPEDIACITPYNGQLALLSSMLRE--KYPGLELGSVDGFQG 655
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
RE +AV++S+VRSN VGFLG+ RR+NVA+TR +H+ + D+ TI
Sbjct: 656 REKEAVVVSLVRSNPENEVGFLGEKRRLNVAMTRPKRHLCICGDAETIS 704
>gi|385800522|ref|YP_005836926.1| DNA helicase [Halanaerobium praevalens DSM 2228]
gi|309389886|gb|ADO77766.1| DNA helicase [Halanaerobium praevalens DSM 2228]
Length = 749
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 203/724 (28%), Positives = 341/724 (47%), Gaps = 128/724 (17%)
Query: 9 IQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQEL 68
I + + + +L+ +ER+ E++ + E I++L RA Q
Sbjct: 82 IDKEIINYYNKFYQLVDLERNEEIDRHKLE----------------IKYL--SARARQAK 123
Query: 69 CDTICNLFVVSTSTGLGGMHLVLFRVEGN-HRLPPTTLSPGDMVCVRVCD--SRGACATS 125
+ NL G LV F+ + +L T ++PGD+V + + ++ +
Sbjct: 124 GRALLNLRGKDNGNTFGHRPLVKFKSKYQGEKLAETQITPGDLVMISLNKPLNKNNPTGT 183
Query: 126 CIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALML 185
I+ + +I+VA ES P F ++ + VR+D + DT +++R AL
Sbjct: 184 VIE-------KTAYSITVAFES--SPPNF--IYNRGVRLDLF--VNDT-SFQRMFSALEK 229
Query: 186 LQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIAL 245
++ H N + + +++ + E DL E++ F+ SQK AI
Sbjct: 230 IK----HPANEIEKSKRDILLNRKKPEFKSEFDL----EIE-------NFNHSQKNAIKN 274
Query: 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN 305
L K+ L +IQGPPGTGKT EII +AV+ G++VL TA +N AVDN++E L+ L
Sbjct: 275 SLQAKK-LYLIQGPPGTGKTLTAVEIIQQAVKNGDKVLATADSNTAVDNLLELLAANNLK 333
Query: 306 IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKK-SDL------------------ 346
++R+G+P R++ + +L EIV AE R + SDL
Sbjct: 334 VIRIGHPIRVNKKLREHTLDEIVLEHQDYLKAEKLRDQVSDLINKQEAYIYPSGKYRRGL 393
Query: 347 ---------RKDLRQCLKD------DSLAAGIRQLLKQLGKTLKK---KEKETVKEVLSS 388
KDL + ++ + +A+ I +L +++ K KK E + V+E++++
Sbjct: 394 SDQEIKNYAEKDLEKHVRGISPEVIEEMASWI-ELQEKIDKYFKKIESLENKAVEELITA 452
Query: 389 AQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPV 429
A V+ TN A ++ FDL K+ IL GDQ QL P
Sbjct: 453 ADVICTTNITAGAEILEN-QQFDLSIIDEATQATQPAALIPYLKAKKTILIGDQQQLPPT 511
Query: 430 ILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTV 489
+++++A + G+ +SL E+ ++ ++ L QYRM+ I ++S Y L ++ +V
Sbjct: 512 VVNQEAAKNGLKISLFEKLIKTYQNDFSSLLKIQYRMHRKIMGFSSIYFYNNYLKAADSV 571
Query: 490 ASHLLVD--------TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNE 541
A + L D + F + + P++ LDT+ + EE AG+ S+ N
Sbjct: 572 AKNTLSDLGFQLENKSCFPDKSLKAEYPMVFLDTK------EMKAEER-SFAGSNSYDNP 624
Query: 542 GEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGR 601
EAEIV+ + + + + IAV + Y QV + + + VE+ T+D+FQGR
Sbjct: 625 VEAEIVLDLLDRALKSSLKEEEIAVIAAYKDQVDFINQH----NKFKNVEIDTVDAFQGR 680
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
E + +I S VRSN +GFL D RR+NVA+TRA + + V DSSTIC +LL++I
Sbjct: 681 EKEMIIFSAVRSNQDNNIGFLRDLRRLNVALTRAKRKMIFVGDSSTICKYNVYEKLLKYI 740
Query: 662 RYFG 665
+ G
Sbjct: 741 KKSG 744
>gi|312144201|ref|YP_003995647.1| DNA helicase [Halanaerobium hydrogeniformans]
gi|311904852|gb|ADQ15293.1| DNA helicase [Halanaerobium hydrogeniformans]
Length = 749
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 190/655 (29%), Positives = 306/655 (46%), Gaps = 118/655 (18%)
Query: 82 TGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVC------DSRGACATSCIQGFVHNL 134
+G G LV F + +LP T ++ GD+V + + + G A
Sbjct: 137 SGFGHKPLVKFSSKYSGKKLPETEITTGDLVMISLNKPLHPDNPTGTVAEKT-------- 188
Query: 135 GEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK--NGLH 192
+I+VA + +H P F ++ K VR+D + T++R AL +++K N +
Sbjct: 189 ---SYSITVAFD-KHP-PEF--IYSKGVRLDL---FVNETTFDRMFSALEIVKKPQNEIE 238
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
R I F + +++ +D + S++K AI L
Sbjct: 239 TRKRDILLAKKEFTNTAKISY--NSDFLNQSQIK---------------AIENSL-AAED 280
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+IQGPPGTGKT E++ AV++G +VL TA +N AVDN++E L + LN+VRVG+P
Sbjct: 281 FYLIQGPPGTGKTVTAVELVLEAVKKGNKVLTTAGSNTAVDNLLELLIEKDLNVVRVGHP 340
Query: 313 ARISPAVASKSLGEIVKSKLASFVAEFERKK-SDL--RKD--------LRQCLKDDSLA- 360
R++ + +L + V + AE R + SDL ++D R+ L D +
Sbjct: 341 IRVNKKLRKNTLDDRVLKHHSYIEAEKLRDEVSDLINKQDSYIYPGGKYRRGLSDQEIKE 400
Query: 361 ---------------------AGIRQLLKQLGKTLKKKEK---ETVKEVLSSAQVVLATN 396
A +L ++ K K+ EK E V+++L+ A V+ +TN
Sbjct: 401 YAERDIEHHVRGISPKVINEMASWLELQSKIDKYFKQIEKLENEAVEDILNKADVICSTN 460
Query: 397 TGAADPLIR----RLDTFD--------------LVGKRCILAGDQCQLAPVILSRKALEG 438
A +++ L D + + +L GD QL P +++++A +G
Sbjct: 461 ITAGSEILKDFHFNLSVIDEATQSTQPATLIPYFMADKSVLIGDHKQLPPTVINQQAAKG 520
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD-- 496
G+ SL ER + H + L QYRMN I ++S Y GSL ++ +VA H L D
Sbjct: 521 GLAKSLFERLSETHPTDALSTLKIQYRMNRKIMGFSSLNFYDGSLRAAPSVAQHNLGDLG 580
Query: 497 -TP-----FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHH 550
P F + + P++ LDT+ + E L + S+ N E+EIV+
Sbjct: 581 VYPQSEKCFTEKALKPEYPMVFLDTK------EMEASER-SLKASNSYDNPVESEIVLDI 633
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
+ + + IAV +PY QV L + ++L E +E+ T+D+FQGRE + V+ S
Sbjct: 634 LDRAAMLSMDENNIAVITPYKDQVDLLNQH-NNLTE---IEIDTVDAFQGREKEMVVFSA 689
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
VRSN +GFL D RR+NVA+TRA + + + DSSTIC + LL +I+ G
Sbjct: 690 VRSNDDANIGFLRDLRRLNVALTRAKRKIIFIGDSSTICQHQSYKNLLTYIKRVG 744
>gi|159128659|gb|EDP53773.1| DNA helicase, putative [Aspergillus fumigatus A1163]
Length = 730
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 164/499 (32%), Positives = 256/499 (51%), Gaps = 71/499 (14%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +DSQK+AI L R + +I GPPGTGKT L E+I + V++ RVLV P+N +VD
Sbjct: 245 TLNDSQKEAIRFAL-AARDVALIHGPPGTGKTHTLIELILQMVKRKLRVLVCGPSNISVD 303
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV-----AEFERKKSDLRK 348
N+VE+L+ G+ +VR+G+PAR+ P+V SL + + A+ + E + K++ +RK
Sbjct: 304 NIVERLAPNGVPVVRIGHPARLLPSVLEHSLEVLTHTSEAAAIIKDVRKEIDEKQASIRK 363
Query: 349 DL----RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI 404
R+ + DD LK+L + +++E V ++ + VVLAT GA +
Sbjct: 364 TRTGRERRAIYDD---------LKELRREFRERESRCVDNLVRESNVVLATLHGAGGHQL 414
Query: 405 RRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKAL--------- 436
+ FD+V + +LAGD QL P + S
Sbjct: 415 KN-QKFDVVVIDEASQALEAQCWIPLLSASKVVLAGDHLQLPPTVKSSVDKLKNTKKKEK 473
Query: 437 ---------------EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGG 481
+ + +L +R +LH + LTTQYRM++ I + S E+Y
Sbjct: 474 SDTKDASANSAEIIGDFSLETTLFDRLLSLHGPGIKRMLTTQYRMHEKIMQFPSDELYES 533
Query: 482 SLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGS 537
L+++ V S LL D P+ V+ T T+ P++ DT+ P + + L G S
Sbjct: 534 KLVAAEAVKSRLLKDLPYEVEETDDTREPIVFWDTQGGDFPEKTEDDDVGKKEALLGE-S 592
Query: 538 FYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDS 597
NE EA +V HV +LI AGV P IA +PY Q+ L L + + G+E+ ++D
Sbjct: 593 KSNEMEALVVAKHVQNLIQAGVKPEDIACITPYNGQLSLLSSMLRE--KYPGLELGSVDG 650
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLAR 656
FQGRE +AV++S+VRSN+ VGFLG+ RR+NVA+TR +H+ + DS TI + FL R
Sbjct: 651 FQGREKEAVVVSLVRSNSEHEVGFLGEKRRLNVAMTRPKRHLCICGDSETISKGSAFLKR 710
Query: 657 LLRHIRYFGRVKHAEPGSF 675
+ + +++ + G
Sbjct: 711 WMAFLEEHADLRYPDAGEL 729
>gi|146423531|ref|XP_001487693.1| hypothetical protein PGUG_01070 [Meyerozyma guilliermondii ATCC
6260]
Length = 701
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 203/697 (29%), Positives = 317/697 (45%), Gaps = 140/697 (20%)
Query: 46 DENSDSSKPIEFLVSHGRAPQELCD---TICNLFVVSTSTGLGGMHLVLFRVEGNHRLPP 102
++ +DS +E+L S+ +P++L + NL V TGLGG L+ ++ + R
Sbjct: 18 EQQADSELTLEYLSSY--SPKKLAKLGLAVVNLVVHGIRTGLGGKLLMELTLDPSVRGEN 75
Query: 103 TTLSPGDMVC---VRVCDSRGAC-----ATSCIQGFVHNLGEDGCTISVALESRHGD-PT 153
T S G + VR+ + + + + + + + +I A+E +
Sbjct: 76 TEFSTGSLRVGDIVRIDTMKNSTEPQKDTSDAVDAVITKISSN--SIVAAVEDDDNELGL 133
Query: 154 FSKLFGKSVRIDRIQGLADTLTYERNCEALMLL------QKNGLHKR-----NPSIA--- 199
++ +S +I I L +++TY+R AL L +KN +H+ P I+
Sbjct: 134 YNNTANESTKI-WIVKLTNSITYKRMNSALGKLSELNDAKKNVIHRVLLGEIEPHISPTP 192
Query: 200 AVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGP 259
T+F D + + SQ+ AI+ LN P+ II GP
Sbjct: 193 KTQTVFFDSQ-------------------------LNTSQQNAISFALNSS-PITIIHGP 226
Query: 260 PGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGL-------------- 304
PGTGKT L E+I + +GERVLV P+N +VD ++E+LS
Sbjct: 227 PGTGKTYTLIELIKQLTFNRGERVLVCGPSNISVDTILERLSPAFTEELDTKKKKRKIKG 286
Query: 305 ---NIVRVGNPARISPAVASKSLGEIVKSKLAS------FVAEFERKKSDLRKDLRQCLK 355
++R+G+PAR+ A SL + K+ S + + E SD K +++ +
Sbjct: 287 NPEKLIRIGHPARLLNANLQHSLDVMSKTNYGSTNDSKSILQDIETDISDTLKQIKKTKR 346
Query: 356 DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD-------------P 402
A + LKQL K L+ +EK+ V++++ AQVVL+T G+ P
Sbjct: 347 YGERRA-LYSELKQLKKELRIREKKVVQDLVVGAQVVLSTLHGSGSYELTSIYKDQAFGP 405
Query: 403 LIRRLDTF-------------------DLVGKRCILAGDQCQLAPVI------------- 430
DT L KR ++AGD QL P +
Sbjct: 406 EKPLFDTIIIDEVSQSMEPQCWIPLVNHLGFKRLVIAGDNMQLPPTVKSEEKKKREKKEV 465
Query: 431 ---LSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSS 487
L L+ + +L +R L L TQYRMN I ++ S+E+YGG L++
Sbjct: 466 GDRLKDLRLKYSLEHTLFDRLIGLGGAKYKQLLDTQYRMNTQIMTFPSRELYGGKLLAHE 525
Query: 488 TVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIV 547
+VA L D V T + DT+ G + D TGS YNE EAE+V
Sbjct: 526 SVADISLADMTDVMHNDDTTEVCIWYDTQ------GQGFNDQTDDDTTGSKYNEHEAELV 579
Query: 548 VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVI 607
V H LI AGV+ +I + +PY +QV +++ L + VEV+T+D FQGRE +A++
Sbjct: 580 VQHTHRLIDAGVTAESIGIITPYSSQVGIIKKIL----QNPAVEVSTVDGFQGREKEAIL 635
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
IS+VRSN G +GFL D RR+NVA+TR +H+ V+ D
Sbjct: 636 ISLVRSNDEGEIGFLRDKRRLNVAMTRPKRHLCVIGD 672
>gi|152990986|ref|YP_001356708.1| DNA/RNA helicase [Nitratiruptor sp. SB155-2]
gi|151422847|dbj|BAF70351.1| DNA/RNA helicase [Nitratiruptor sp. SB155-2]
Length = 726
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 208/713 (29%), Positives = 336/713 (47%), Gaps = 127/713 (17%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+ EF +R L+ ER AE+E T E+ A+ S + + I +GRA I
Sbjct: 68 IHEFCERYRYLINTERRAEIEATIGEIKAL------SGAEREI-----YGRA-------I 109
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
L + L ++ V F G R+ T + GD+V + SRG S + G V
Sbjct: 110 LGLRGSKEPSRLN-LYFVKF---GRSRIIDTEIGSGDIVLI----SRGEPLKSDVTGTVS 161
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK-NGL 191
+ ++ I+VA E + P + ++G +RID + +T++R E L LLQ G+
Sbjct: 162 EVRKN--FITVAFEEK--PPKW--VYGDGIRIDL---YINDVTFKRMEENLHLLQHATGV 212
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
+R + A + W + EV ++SQ +A+ L +
Sbjct: 213 QRRMRNFALGI----------WEPKEPKKQSFEV------VTKLNESQNEAVQKALGSE- 255
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+ +I GPPGTGKT L E+I + V++G +VL TA +N AVDNM+++L+ +++VR+G+
Sbjct: 256 -VFLIHGPPGTGKTSTLIELILQEVKRGNKVLATADSNTAVDNMLQRLASHDISLVRIGH 314
Query: 312 PARI--------SPAVASKSL-GEIVKS---KLASFVAEFERKKSDLRKDLRQCLKD--- 356
PARI A KSL E +K ++ V E E+ + R D
Sbjct: 315 PARILYELEEFSIHAKYEKSLEAEAIKKGWEEIGVLVKEREQHSKPTQARARGMSHDRIM 374
Query: 357 -----------------DSLAAGIR--QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
S+A I+ + + L K L+ +E+ K ++ +A VVL+TN
Sbjct: 375 TLAARGKSMRGVSVATMQSMAKWIKLDRKIDSLIKNLRFEEERVYKNIIENADVVLSTNG 434
Query: 398 GAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEG 438
+++ FD+ R I+AGD QL P ++S
Sbjct: 435 MIMSDMLKNFH-FDVAVIDEGSQQIIPSTLIPIMHANRFIIAGDHKQLPPTVVSDSK--- 490
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+ SL E+ + A+ L QYRM++ I +++++ Y G LI+ ++V H + D
Sbjct: 491 ELKESLFEKLIIQYPKN-ASMLRIQYRMHEKIMQFSNEQFYEGKLIADASVKHHTICDFE 549
Query: 499 FVKPTW---ITQC-PLLLLDTRLPYGSLSLGCEEHLDLAG-TGSFYNEGEAEIVVHHVFS 553
+P I C PL+ +DT+ G E LA + S+ NE EA+IV
Sbjct: 550 LKEPKRFEAILGCEPLVFVDTK--------GVEAKEMLAQRSTSYENEKEAKIVSALSEE 601
Query: 554 LICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRS 613
L+ G+ I + SPY AQV+ +++ ++ + +EV T+D FQGRE + +IIS VRS
Sbjct: 602 LLSMGLKTEDIGIISPYAAQVKRIKKLVE--TDERIIEVKTVDGFQGREKEVIIISFVRS 659
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGR 666
N G +GFL D RR+NVAITRA + + + D+ST+ H+ L +++ G+
Sbjct: 660 NENGKIGFLKDLRRLNVAITRAKRKLICIGDASTLIHDETYKAFLEYVKKEGK 712
>gi|134078610|emb|CAK32628.1| unnamed protein product [Aspergillus niger]
Length = 723
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 177/582 (30%), Positives = 290/582 (49%), Gaps = 98/582 (16%)
Query: 156 KLFGKSVRIDRIQGLADTLTYERNCEAL--MLLQKNGLHKRNPSIAAVVTLFGDKEDVTW 213
+L+G+ V + + LA+ +TY R + + M+ H +A FG +
Sbjct: 177 ELWGRKVWMIK---LANDVTYRRMNQTMEKMVKMAESEHTHFMRVA-----FGHTSPM-- 226
Query: 214 LEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA 273
L D+ + T +DSQK+AI L R + +I GPPGTGKT L E+I
Sbjct: 227 -----LPDYDSIGALEFTDPTLNDSQKEAIRFAL-AAREIALIHGPPGTGKTHTLIELIV 280
Query: 274 RAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLA 333
+ VQ+ +RVLV P+N +VDN+VE+L+ + +VR+G+PAR+ P+V SL + + A
Sbjct: 281 QMVQRKQRVLVCGPSNISVDNIVERLAPKKVPVVRIGHPARLLPSVLDHSLEVLTHTSEA 340
Query: 334 SFVA-----EFERKKSDLRKDL----RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE 384
+ + E ++K++ +RK R+ + DD + +++E + V+
Sbjct: 341 AAIVRDVRKEIDQKQASIRKTRAARERRAIYDDLREL---------RREFRERENKCVEN 391
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
++ + VVLAT GA ++ FD+V + +LAGD Q
Sbjct: 392 LVRESSVVLATLHGAGGHQLKN-QKFDVVIIDEASQALEAQCWIPLLSASKVVLAGDHLQ 450
Query: 426 LAPVILSR------------------KALEG-GIGVSLLERAATLHEGVLATKLTTQYRM 466
L P + S + LE + +L +R ++H + LTTQYRM
Sbjct: 451 LPPTVKSTKENAKKAAKEKEDKKENGELLENVSLETTLFDRLLSMHGPGIKRMLTTQYRM 510
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGS- 521
++ I + S E+Y L+++ +V LL D P+ V+ T T+ PL+ DT+ P +
Sbjct: 511 HEKIMQFPSDELYDSKLMAADSVKDRLLKDLPYEVEETDDTKEPLVFWDTQGGDFPEKTE 570
Query: 522 -LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV----QH 576
LG + HL + + N+ EA +V HV +L+ AG+ P IAV +PY Q+ Q
Sbjct: 571 DADLGKKAHLGESKS----NDMEALVVSRHVDALVDAGIHPEDIAVITPYNGQLAVLSQM 626
Query: 577 LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN--VAITR 634
LRE+ +E+ ++D FQGRE +AV++S+VRSN+ VGFLG+ RR+N VA+TR
Sbjct: 627 LREKY------PSIELGSVDGFQGREKEAVVVSLVRSNSEHEVGFLGERRRLNALVAMTR 680
Query: 635 ACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHAEPGSF 675
+H+ + DS TI + FL R + + +++ + G
Sbjct: 681 PKRHLCICGDSETISKGSGFLKRWMAFLEEHADLRYPDAGDL 722
>gi|448084543|ref|XP_004195631.1| Piso0_005032 [Millerozyma farinosa CBS 7064]
gi|359377053|emb|CCE85436.1| Piso0_005032 [Millerozyma farinosa CBS 7064]
Length = 738
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 180/535 (33%), Positives = 263/535 (49%), Gaps = 90/535 (16%)
Query: 224 EVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERV 282
++K ++ ++SQK+AI L + P II GPPGTGKT L EII + +++Q ERV
Sbjct: 211 KLKDKDFFNQSLNESQKEAINFSLFES-PFSIIHGPPGTGKTYTLIEIIKQLSLKQNERV 269
Query: 283 LVTAPTNAAVDNMVEKLS---DVGLN-------------------IVRVGNPARISPAVA 320
LV P+N +VD ++E+L+ D N ++R+G+PAR+ +
Sbjct: 270 LVCGPSNVSVDTILERLALEFDPKPNTKEKRSKGQKKSGTRDPSQLIRIGHPARLLDSCL 329
Query: 321 SKSLGEIVKSKLAS------FVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL----KQL 370
SL + KS + S + + E +D + +++C G R++L K
Sbjct: 330 KHSLEVLSKSDVGSGNDSRAILKDIENDINDTLRKIKKCRN-----YGERRVLWNDLKGY 384
Query: 371 GKTLKKKEKETVKEVLSSAQVVLATNTGAA---------DP---LIRRLDTFDLV----- 413
K LKK+E + V E++ A+V+LAT G+ +P ++ + FD +
Sbjct: 385 RKELKKRETKLVSELVVGAKVILATLHGSGGYDLTSVYKNPEFASVKDGNLFDTIIIDEV 444
Query: 414 -----------------GKRCILAGDQCQLAPVILSRK-------------ALEGGIGVS 443
KR I+AGD QL P + S K A + V+
Sbjct: 445 SQSLEPQCWIPLISHLGFKRLIIAGDNLQLPPTVKSSKLDAPAAQGVAVPAAARHSLEVT 504
Query: 444 LLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
L +R G KL TQYRMNDAI ++ S+E+Y G L + S+V + LL D P V+P
Sbjct: 505 LFDRIVRECNGDAYKKLLDTQYRMNDAIMAFPSRELYEGKLKADSSVKNILLRDMPNVQP 564
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPS 562
T T P L DT+ + E+ GS YNE E V H+ LI AGV+P
Sbjct: 565 TDETSPPCLWYDTQGGDYPEQMDDSENPLTDSMGSKYNEMELLAVKKHIDLLIAAGVAPR 624
Query: 563 AIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
I V SPY AQV LR+ L + VE ATID+FQGRE +A+IIS+VRSN AVGFL
Sbjct: 625 DIGVISPYAAQVARLRKALAAA-DLDAVEAATIDAFQGREKEAIIISLVRSNDDRAVGFL 683
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNT--FLARLLRHIRYFGRVKHAEPGSF 675
+ RR+NVA+TR +H+ VV D + + FL H+ + + + G +
Sbjct: 684 SEKRRLNVAMTRPKRHLCVVGDMDLMSRSDVPFLRHWAAHVESSYEILYPDLGDY 738
>gi|313674250|ref|YP_004052246.1| DNA helicase [Marivirga tractuosa DSM 4126]
gi|312940948|gb|ADR20138.1| DNA helicase [Marivirga tractuosa DSM 4126]
Length = 655
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 187/708 (26%), Positives = 327/708 (46%), Gaps = 117/708 (16%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
+ +D++ L+++ER +E+EF E+ + P + GRA
Sbjct: 5 TNIDQYKNFFERLIQLERKSEMEFHLNEIMLLSAPQREA-----------KGRA------ 47
Query: 71 TICNLFVVSTSTGLGGMHLV-LFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
I NL + TG+GG++LV L R G LP +S GD+V + G + +
Sbjct: 48 -ILNLSGKDSGTGIGGVYLVKLVRGSG---LPDNEISNGDVVIISKDKPSGKEEQATV-- 101
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
+ + +I++A + P + ++G+++R+D ++ +T++R +A+ L
Sbjct: 102 ----VSKTKRSITIAY---NKTPPYL-VYGRNLRLDL---YSNDITFQRMLDAIEDL--- 147
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
KR P + + K ++ EEN+ K + + Q++ I L
Sbjct: 148 ---KRLPILQEYI-----KSNIDLFEENE-----NTKNHSFQQQNLNSKQQEIINQAL-V 193
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
+ +I GPPGTGKT L +I + G++VLVTAP+N AVDN++EKL ++ + R+
Sbjct: 194 TNDIFLIHGPPGTGKTTTLSYLIKSLFEGGKKVLVTAPSNTAVDNILEKLQNLEIPSTRI 253
Query: 310 GNPARISPAVASKSLG-------------------EIVKSKLASFVAEFERKKSDL---- 346
GNP R+ + + SL +++K + ++ + + L
Sbjct: 254 GNPIRMDENLLNLSLDVQLQDHPDYQQANGIWNAIQVLKKEQNEYIPASGQNRRGLSDNK 313
Query: 347 -------RKDLR--QCLKDDSLAAGIRQLLKQLGKTLKKKEK---ETVKEVLSSAQVVLA 394
+K R Q K +A I+ + +Q+ K ++ + ++ +L + V+ A
Sbjct: 314 IIQLASSKKPYRGIQSAKLRKMAKWIK-IQQQINKNYEQAQALQLSAIESILEQSPVICA 372
Query: 395 TNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKA 435
TN+ A L++ + FD+V G++ +LAGD QL P + S +A
Sbjct: 373 TNSSAGSELLKDI-IFDVVCIDEATQSTEPEALIPLVKGRKWVLAGDHQQLPPTVKSSEA 431
Query: 436 LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV 495
+ +SL ER + LT QYRM+ I ++++ Y L + +VA H L
Sbjct: 432 --SDLSISLFERFQKELPANRSNILTIQYRMHQEIMRFSNENFYQKKLKAHPSVAKHSLA 489
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD--LAGTGSFYNEGEAEIVVHHVFS 553
D P P L + P + + CE+ ++ LA + S++N+ E + +
Sbjct: 490 DLPGFDPFPYVNPALEKVVQSSP-AVVFVPCEQGVEEQLADSHSWFNKAEIALTKEITDA 548
Query: 554 LICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRS 613
L+ + + P I + SPY QV L+ L D VE+ +ID FQGRE + +IIS+VRS
Sbjct: 549 LLSSRLFPEDIGIISPYDQQVSRLKSDLKDY----HVEIKSIDGFQGREKEVIIISLVRS 604
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
N +GFL D RR+NVA+TRA + + ++ T+ N L++ I
Sbjct: 605 NLKEDIGFLRDYRRLNVALTRAKRKLIIIGSPFTLQSNPIYKSLIKKI 652
>gi|190345144|gb|EDK36972.2| hypothetical protein PGUG_01070 [Meyerozyma guilliermondii ATCC
6260]
Length = 701
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 203/697 (29%), Positives = 316/697 (45%), Gaps = 140/697 (20%)
Query: 46 DENSDSSKPIEFLVSHGRAPQELCD---TICNLFVVSTSTGLGGMHLVLFRVEGNHRLPP 102
++ +DS E+L S+ +P++L + NL V TGLGG L+ ++ + R
Sbjct: 18 EQQADSELTSEYLSSY--SPKKLAKLGLAVVNLVVHGIRTGLGGKLLMELTLDPSVRGEN 75
Query: 103 TTLSPGDMVC---VRVCDSRGAC-----ATSCIQGFVHNLGEDGCTISVALESRHGD-PT 153
T S G + VR+ + + + + + + + +I A+E +
Sbjct: 76 TEFSTGSLRVGDIVRIDTMKNSTEPQKDTSDAVDAVITKISSN--SIVAAVEDDDNELGL 133
Query: 154 FSKLFGKSVRIDRIQGLADTLTYERNCEALMLL------QKNGLHKR-----NPSIA--- 199
++ +S +I I L +++TY+R AL L +KN +H+ P I+
Sbjct: 134 YNNTANESTKI-WIVKLTNSITYKRMNSALGKLSELNDAKKNVIHRVLLGEIEPHISPTP 192
Query: 200 AVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGP 259
T+F D + + SQ+ AI+ LN P+ II GP
Sbjct: 193 KTQTVFFDSQ-------------------------LNTSQQNAISFALNSS-PITIIHGP 226
Query: 260 PGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGL-------------- 304
PGTGKT L E+I + +GERVLV P+N +VD ++E+LS
Sbjct: 227 PGTGKTYTLIELIKQLTFNRGERVLVCGPSNISVDTILERLSPAFTEELDTKKKKRKIKG 286
Query: 305 ---NIVRVGNPARISPAVASKSLGEIVKSKLAS------FVAEFERKKSDLRKDLRQCLK 355
++R+G+PAR+ A SL + K+ S + + E SD K +++ +
Sbjct: 287 NPEKLIRIGHPARLLNANLQHSLDVMSKTNYGSTNDSKSILQDIETDISDTLKQIKKTKR 346
Query: 356 DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD-------------P 402
A + LKQL K L+ +EK+ V++++ AQVVL+T G+ P
Sbjct: 347 YGERRA-LYSELKQLKKELRIREKKVVQDLVVGAQVVLSTLHGSGSYELTSIYKDQAFGP 405
Query: 403 LIRRLDTF-------------------DLVGKRCILAGDQCQLAPVI------------- 430
DT L KR ++AGD QL P +
Sbjct: 406 EKPLFDTIIIDEVSQSMEPQCWIPLVNHLGFKRLVIAGDNMQLPPTVKSEEKKKREKKEV 465
Query: 431 ---LSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSS 487
L L+ + +L +R L L TQYRMN I ++ S+E+YGG L++
Sbjct: 466 GDRLKDLRLKYSLEHTLFDRLIGLGGAKYKQLLDTQYRMNTQIMTFPSRELYGGKLLAHE 525
Query: 488 TVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIV 547
+VA L D V T + DT+ G + D TGS YNE EAE+V
Sbjct: 526 SVADISLADMTDVMHNDDTTEVCIWYDTQ------GQGFNDQTDDDTTGSKYNEHEAELV 579
Query: 548 VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVI 607
V H LI AGV+ +I + +PY +QV +++ L + VEV+T+D FQGRE +A++
Sbjct: 580 VQHTHRLIDAGVTAESIGIITPYSSQVGIIKKIL----QNPAVEVSTVDGFQGREKEAIL 635
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
IS+VRSN G +GFL D RR+NVA+TR +H+ V+ D
Sbjct: 636 ISLVRSNDEGEIGFLRDKRRLNVAMTRPKRHLCVIGD 672
>gi|50546118|ref|XP_500586.1| YALI0B06897p [Yarrowia lipolytica]
gi|49646452|emb|CAG82817.1| YALI0B06897p [Yarrowia lipolytica CLIB122]
Length = 649
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 191/622 (30%), Positives = 312/622 (50%), Gaps = 89/622 (14%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSP----------GDMVCVRVCDSRGA 121
I NL + S TG GG + P ++SP GD++ ++ ++ +
Sbjct: 41 IVNLTLASLRTGFGGKLVATLE-------PDVSISPEITGGNDIRTGDLI--KIIKNKTS 91
Query: 122 CATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCE 181
++ V L I VAL+ D T S L G VR+ ++ LA+ TY R
Sbjct: 92 KDDKAVEAVV--LKSTKAKIEVALDENF-DATDS-LDG--VRLHVVK-LANNATYRRMEF 144
Query: 182 ALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKK 241
AL K+ L + ++ ++ + DKE ++ D D ++L + SQ +
Sbjct: 145 AL----KDMLRMKEQEMSDLMRVCVDKETIS-----DHKDDPNLQL---YNTALNPSQVE 192
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLS 300
A+ + + + ++ GPPGTGKT L EII + VQ+ G+RVLV P+N +VD ++E+L
Sbjct: 193 AVQHSVGSAQ-VTVVHGPPGTGKTHTLVEIIRQLVQKKGQRVLVCGPSNISVDTLLERLH 251
Query: 301 D--VGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
G ++R+G+PAR+ A SL + K+ + + + D++ ++ Q L+ S
Sbjct: 252 PHFNGNQLLRIGHPARLLEANLQHSLDIVSKTCDSGQIVK------DVQVNIDQQLRKIS 305
Query: 359 LAAGIRQ---LLKQLG---KTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
R+ + K++G K K+++K+ V ++L A+VV AT G D ++ + FD
Sbjct: 306 KTKSGREKYAMYKEIGMLRKEFKERQKKVVADLLLQAKVVCATLHGTGDSCLKDVQ-FDT 364
Query: 413 V----------------------GKRCILAGDQCQLAPVILSRKA-LEGGIGVSLLERAA 449
+ ++ I+AGD QL P + ++ ++ + ++L +
Sbjct: 365 IIIDEISQSLEPQCWIPISRYPSAQKLIIAGDNQQLPPTVKCEQSKIKKQLELTLFDHLV 424
Query: 450 TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCP 509
++ + L QYRM+DAI + S+E+YGG L++ S+VA H L D P V + T P
Sbjct: 425 GNYDNIRRL-LKVQYRMHDAIMQFPSQELYGGQLVAHSSVARHTLADLPHVTEDYETTTP 483
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAG--TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
++ +DT+ E D +G S N+ EA +V HV L+ GV S I V
Sbjct: 484 VVWIDTQ------GDDFYEQEDESGKLNPSRLNDSEAYLVRRHVGKLLDLGVLESEIGVI 537
Query: 568 SPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
+PY AQ +R + P VEVAT+DSFQGRE +AVI+S+VRSN +GFLG+ RR
Sbjct: 538 TPYSAQASLIRSLIH--PTNPAVEVATVDSFQGREKEAVILSLVRSNENHEIGFLGEYRR 595
Query: 628 MNVAITRACKHVAVVCDSSTIC 649
+NVA+TR +H+ VV + T+
Sbjct: 596 LNVAMTRPRRHLCVVGNMETLA 617
>gi|320591247|gb|EFX03686.1| DNA-binding protein smubp-2 [Grosmannia clavigera kw1407]
Length = 737
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 219/699 (31%), Positives = 317/699 (45%), Gaps = 134/699 (19%)
Query: 72 ICNLFVVSTSTGLGGMH-LVLFR---------VEGNHRLPPTTLSPGDMVCVRVCDSRGA 121
+ NL V TG+GG L L R E LP L GD+V V + G
Sbjct: 56 LTNLVVDGRRTGMGGRTVLTLVRDGALSVAKNSEDGSELPEHGLRTGDIVLV--AEQPGG 113
Query: 122 CATSCIQGFVHNLGEDGCT-------ISVALESRHGDPTFSKLFGKSV----RIDRIQGL 170
A + G G + V L+ GD S+ V R+ ++ L
Sbjct: 114 SAKKREMRELEQRGSRGVITRVRRTGLDVGLD--QGDSDSSREEAVDVLLAGRVWLVK-L 170
Query: 171 ADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEEN--DLADWSEVKLD 228
AD +T+ R A+ LQ + + + LFG EN D W +D
Sbjct: 171 ADDVTFRRMSAAMQTLQT---MPSSEYTSLMRVLFGQASPSPAARENEEDAIRW----ID 223
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + D SQ+ A+ L + +I GPPGTGKT L E++ + V +G+RVLV P+
Sbjct: 224 G----SLDASQRAAVRFALAAPE-VALIHGPPGTGKTHALVELVLQLVGRGQRVLVCGPS 278
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK 348
N AVDN+VE+L G+ +VR+G+PAR+ P+VA +L + ++ A + R D ++
Sbjct: 279 NIAVDNLVERLGPHGVPMVRLGHPARLLPSVAGYALDVLTQTSEAGAIVRDVRADMDRQQ 338
Query: 349 D-LRQCLKDDSLAA--------GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
D LRQ K L+A + L+ L + + +E+ V ++++ ++VVLAT GA
Sbjct: 339 DELRQLQKGQKLSAAARRAARRSVYGELRALRREYRDRERRCVHDLVAGSRVVLATLHGA 398
Query: 400 A---------DPLIRRLDT--FDLVG--------------KRCILAGDQCQLAPVILSR- 433
D R D D VG ++ + AGD QL P + SR
Sbjct: 399 GGSQLRVAAGDQASRNFDVVVIDEVGQALEAQCWVALLGARKVVCAGDHLQLPPTVKSRG 458
Query: 434 ------------------------------KALEG------GIGVSLLERAATLHEGVLA 457
K E + +L +R LH +
Sbjct: 459 SGGGGGKKKGGKGKGGSGKGEKGKSEKEDGKEAENEAHTTLSLEYTLFDRLLALHGDSIK 518
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF--------VKPTWITQCP 509
LTTQYRM++ I + S +YGG L+++ VA LL D + V T T+ P
Sbjct: 519 RMLTTQYRMHERIMRFPSDTLYGGHLVAAEAVAGRLLRDLRYGDADDGCPVADTDDTREP 578
Query: 510 LLLLDTRLPYGSLSLG---CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAV 566
L+ +DT+ G + G E+ T S +N EA +V HV +L+ AGV P IAV
Sbjct: 579 LVFIDTQ--GGDFAEGDQTSEQTSRGKLTDSKHNTLEAALVRQHVRALVAAGVRPQDIAV 636
Query: 567 QSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
+PY AQV L L AG+EV T+D FQGRE +AV++S+VRSN VGFL D R
Sbjct: 637 VTPYSAQVALLAPLKTAL---AGLEVGTVDGFQGREKEAVVLSLVRSNLTADVGFLADRR 693
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRH--IRY 663
R+NVA+TR + + V+ DS T++A L H +RY
Sbjct: 694 RLNVAMTRPKRSLTVIGDS-----ETWMAFLEEHADLRY 727
>gi|373958634|ref|ZP_09618594.1| ATPase AAA [Mucilaginibacter paludis DSM 18603]
gi|373895234|gb|EHQ31131.1| ATPase AAA [Mucilaginibacter paludis DSM 18603]
Length = 636
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 157/453 (34%), Positives = 232/453 (51%), Gaps = 74/453 (16%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGER-VLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
L I+ GPPGTGKT L + I + QGE+ +LV AP+N AVD + EKL+ GLN++R+GN
Sbjct: 196 LAIVHGPPGTGKTTTLVQAIKSLISQGEKQLLVVAPSNTAVDLLSEKLAGEGLNVLRIGN 255
Query: 312 PARISPAVASKSLG------------EIVKSKLASF---VAEFERKKSDLRKDLRQCLKD 356
PAR+S + S +L + +K + A F +++R +D R+ L D
Sbjct: 256 PARVSDRLMSLTLDSKMAEHGRMKDIKKLKKQAAEFKNMAHKYKRSFGKAERDQRKALFD 315
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--- 413
++ +++K +GKT E+ + +++ AQV+ AT G+ IR L +V
Sbjct: 316 EA-----HKIMKDVGKT----EQYIIDDLVGRAQVITATLVGSNHYTIRGLQFNTVVIDE 366
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH-EGVLA 457
++ ILAGD QL+P I S KA G+ +LLE+ TLH E V+
Sbjct: 367 AGQALEPACWIPILKAQKVILAGDHFQLSPTIKSAKAAHDGLSNTLLEKCITLHPEAVVL 426
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
L QYRMN+AI +++S+ Y L + ++VA LL + P +DT
Sbjct: 427 --LEEQYRMNEAIMTYSSQVFYQNKLQAHASVAQRLL---------FTADAPFSYVDT-- 473
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC------AGVSPSAIAVQSPYV 571
GC GT S N EA + H+ L+ + IA+ SPY
Sbjct: 474 ------AGCGFDEKPEGT-SMANAEEAGFLFKHLEKLVTELNEHYTTENFPTIAIVSPYK 526
Query: 572 AQVQHLRERLDDLP----EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
Q++ L+++ P + V TIDSFQG+E D V ISM RSNT G +GFL D RR
Sbjct: 527 EQIRLLKDQQQHWPGLQLYQDKISVNTIDSFQGQERDIVYISMTRSNTKGEIGFLSDIRR 586
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
MNVA+TRA K + ++ DSST+ F A ++++
Sbjct: 587 MNVAMTRARKKLIIIGDSSTLAQAPFYADMIKY 619
>gi|284161290|ref|YP_003399913.1| DNA helicase [Archaeoglobus profundus DSM 5631]
gi|284011287|gb|ADB57240.1| DNA helicase [Archaeoglobus profundus DSM 5631]
Length = 636
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 218/713 (30%), Positives = 325/713 (45%), Gaps = 144/713 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L++F ++ EL+ IER A++E E I FL R +
Sbjct: 4 LNDFIDKLKELVEIERRAQIEAMLNE----------------IRFLSGEERELRGRAILN 47
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
N VV G LV + G R T ++ GD+V + SRG S + G V
Sbjct: 48 LNGKVVGEEFG---YKLVKY---GRRRKIETNINVGDLVLI----SRGNPLKSDLVGVVA 97
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
G I VALE+ P+++ K VRID A+ +T+ R E L L
Sbjct: 98 EKG--NRYIVVALEN---VPSWAL---KDVRIDL---YANDVTFRRWIENLENLG----- 141
Query: 193 KRNPSIAAVVTLFG----DKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
N ++ A+ G D+ + + E D + ++SQ++A+AL L
Sbjct: 142 --NVALKALKFALGLEKPDEPEKAYFEPVD--------------ERLNESQREAVALALG 185
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+I GP GTGKT L EI+ + V++G +VL TA +N AVDN+VE+L D LNIVR
Sbjct: 186 SN-DFFLIHGPFGTGKTRTLAEIVRQEVKRGRKVLATAESNIAVDNLVEQLRD--LNIVR 242
Query: 309 VGNPARI---SPAVASKSLGEIVKSKLASFVAEFER---KKSDLRKD---LRQCLKDD-- 357
+G+P+R S +++K +G + + ER ++ RK LR+ L D+
Sbjct: 243 LGHPSRTQLKSTTLSAKVVGHERYKDVEELRSRAERLIKARAKFRKPTPALRRGLSDEEI 302
Query: 358 -------------------SLAAGIR--QLLKQLGKTLKKKEKETVKEVLSSAQVVLATN 396
S+A I+ +L+++L + E+E +EV+ A+VVLATN
Sbjct: 303 LELAEKKRGARGVSWKVIRSMAEWIKLNKLIEELLNKARALEEEIAREVIEEAEVVLATN 362
Query: 397 TGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALE 437
+ A I FD+ ++ +LAGD QL P +L + L
Sbjct: 363 STAFTIDI----NFDVAVIDEATQSTIPSVLIPINKAEKFVLAGDHKQLPPTVLKAEELS 418
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT 497
+ L+E+ H + L QYRMN+ + + +KE YGG L + +V + L D
Sbjct: 419 KTLFEMLIEKYPE-H----SKMLEIQYRMNEKLMEFPNKEFYGGKLKADESVRNITLADL 473
Query: 498 PFVKPTWIT--QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG--EAEIVVHHVFS 553
I + L+ LDT C + + GS E EA+IV V
Sbjct: 474 RVESEDEIVNPRNVLIFLDTS--------KCPDRFERQRKGSTSRENPLEAKIVTKIVKK 525
Query: 554 LICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRS 613
L+ AGV I V +PY QV LR +D VEV T+D +QGRE + +IIS VRS
Sbjct: 526 LVRAGVKREWIGVITPYEDQVDLLRRMID-------VEVNTVDGYQGREKEVIIISFVRS 578
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGR 666
N G +GFL D RR+NVA+TRA + + +V DS T+ + RL+ I+ G+
Sbjct: 579 NRRGEIGFLEDLRRLNVALTRAKRKLIMVGDSKTLSTHETYRRLIEFIKREGK 631
>gi|46124979|ref|XP_387043.1| hypothetical protein FG06867.1 [Gibberella zeae PH-1]
Length = 685
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 199/622 (31%), Positives = 299/622 (48%), Gaps = 95/622 (15%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEGN----HRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ NL V TGLGG +V + LP L GD+V V A S
Sbjct: 51 LTNLVVSGQRTGLGGRTVVELSPDAATGSADELPEHGLRTGDIVLVA-----EQPAGSAK 105
Query: 128 QGFVHNLGEDGCT----------ISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYE 177
+ V +L + G +SVA++ + F+ R+ ++ LAD +TY+
Sbjct: 106 KREVKDLEKKGARGVVTKVRREWVSVAIDEGKEEVAFTG------RVWAVK-LADEVTYK 158
Query: 178 RNCEALMLLQKNGLHKRNPSIAAVVT--LFGDKE------DVTWLEENDLADWSEVKLDG 229
R M L+K + S + +T LFG D+T E DW
Sbjct: 159 R-----MNWTMEKLNKMDESEYSSLTRVLFGLSSPSPVATDLTKDESVGNLDW------- 206
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
T +DSQK AI L R + +I GPPGTGKT L E+I + ++ +R+LV P+N
Sbjct: 207 -FDPTLNDSQKDAIRFAL-ASREVALIHGPPGTGKTHTLIELILQMIKLEQRILVCGPSN 264
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD 349
+VDN+VE+L+ + I+R+G+PAR+ P+V SL + ++ A + + R + D ++
Sbjct: 265 ISVDNVVERLAPHKVPILRLGHPARLLPSVVDHSLDVLTQTSEAGTIVKDIRSEMDTKQA 324
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
+ K I LK+L K +++E+ V ++ ++VVLAT GA +R +
Sbjct: 325 SIKKTKSGKERKAIYNDLKELRKEFRERERRCVSTLIGGSKVVLATLHGAGGYQLRN-EE 383
Query: 410 FDLV-------------------GKRCILAGDQCQLAPVILS-----RKALEGGIG---- 441
FD+V K+ + AGD QL P I S + ++ G+
Sbjct: 384 FDVVIIDEASQALEAQCWVPLVSAKKVVCAGDHLQLPPTIKSTNTKVKAPVKEGVKITKG 443
Query: 442 ----VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT 497
V+L +R LH + LTTQYRM+++I + S E+Y LI++ V LL D
Sbjct: 444 ATLEVTLFDRLLALHGPSIKRMLTTQYRMHESIMRFPSDELYDSKLIAADAVKHRLLKDL 503
Query: 498 PF-VKPTWITQCPLLLLDTRLPYGSLSLGCEE---HLDLAGTGSFY-----NEGEAEIVV 548
+ V+ T P++ +DT+ G EE G S + NE EA +V
Sbjct: 504 EYEVEDNEDTSEPVIFIDTQ--GGDFPEKNEEDDKDTPKKGKASLHGDSKSNEMEAALVQ 561
Query: 549 HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVII 608
HV L+ AGV P IAV +PY AQ+ L D P G+E+ ++D FQGRE +AVI+
Sbjct: 562 QHVKQLVAAGVRPEDIAVVTPYNAQLAVLAPLKDKFP---GIELGSVDGFQGREKEAVIV 618
Query: 609 SMVRSNTLGAVGFLGDSRRMNV 630
S+VRSN+ G VGFLG+ RR+NV
Sbjct: 619 SLVRSNSEGEVGFLGERRRLNV 640
>gi|389852292|ref|YP_006354526.1| DNA2-NAM7 helicase family protein [Pyrococcus sp. ST04]
gi|388249598|gb|AFK22451.1| putative DNA2-NAM7 helicase family protein [Pyrococcus sp. ST04]
Length = 633
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 199/652 (30%), Positives = 314/652 (48%), Gaps = 124/652 (19%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV + G ++ T +S GD+V + S+ S + G V G+ I+VAL
Sbjct: 29 GYFLVKY---GRNKEIKTEISVGDLVVI----SKRDPLKSDLVGTVVEKGK--RFITVAL 79
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
E T + ++VRID A+ +T++R E L +++ G KR A+
Sbjct: 80 E------TVPEWALRNVRIDL---YANDITFKRWLENLETIKRAG--KR-----ALKFYL 123
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
G +E ++ E+K + K+ + +QKKAI+ L + +I GP GTGKT
Sbjct: 124 GIEEP---------SEGEEIKFEP-FDKSLNSAQKKAISRALGSE-DFFLIHGPFGTGKT 172
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E+I + +++G +VL TA +N AVDN+VE+L+ G+ IVRVG+P+R+S + +L
Sbjct: 173 RALVELIRQEIKRGNKVLATAESNVAVDNLVERLAREGVKIVRVGHPSRVSRELHETTLA 232
Query: 326 EIVKSK-----------LASFVAEFERKKSDLRKDLRQCLKDDSL---------AAGIR- 364
++ + +AE + R+ L D+ + A G+
Sbjct: 233 YLITQHELYGELRDLRVVGQSLAEKRDTYTKPTPRFRRGLSDEEIIRLAERGRGARGLSA 292
Query: 365 QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+L+K++ + +K K E+ ++++ A VVL TN+ AA ++ +D
Sbjct: 293 RLIKEMAEWIKLNKQVQKAFEEARKLEERIARDIIREADVVLTTNSSAALEVV-DYAKYD 351
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
+ R ILAGD QL P ILS +A E + TL
Sbjct: 352 VAIVDEATQSTIPSILIPLNKVDRFILAGDHKQLPPTILSLEA---------QELSKTLF 402
Query: 453 EGVL------ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD--TPFVKPTW 504
EG++ + LT QYRMN+ I + SKE YGG + + +V + L D + W
Sbjct: 403 EGLIERYPWKSEMLTIQYRMNERIMEFPSKEFYGGKIKAHESVKNITLADLGIKIEEENW 462
Query: 505 IT----QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS 560
+ L+ +DT L + G+ S N EA+IV V L+ AGV
Sbjct: 463 KEVLDPKTVLVFIDTS------KLENKWERQRRGSESRENPLEAKIVAKIVKKLLNAGVK 516
Query: 561 PSAIAVQSPYVAQVQHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAV 619
P I V +PY Q R+ + +PE VEV T+D +QGRE + +I+S VRSN G +
Sbjct: 517 PEWIGVITPYDDQ----RDLISMSVPEE--VEVKTVDGYQGREKEVIILSFVRSNKKGEI 570
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
GFL D RR+NV++TRA + + +V DSST+ + R++ H+R +GR+ AE
Sbjct: 571 GFLKDLRRLNVSLTRAKRKLIMVGDSSTLSSHETYKRMIEHVRKYGRIIEAE 622
>gi|322707009|gb|EFY98588.1| DNA-binding protein SMUBP-2 [Metarhizium anisopliae ARSEF 23]
Length = 717
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 208/687 (30%), Positives = 324/687 (47%), Gaps = 132/687 (19%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF----RVEGNHRLPPTTLSPGDMVCV-------------R 114
I NL V S TGLGG ++ LP + GD+V V R
Sbjct: 50 ITNLVVSSQRTGLGGKTVLELGPDSATSATGELPEHGIRTGDIVLVAEQPAGSAKKREVR 109
Query: 115 VCDSRGA--CATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLAD 172
+ +G+ T +GFV+ VAL+ + F R+ ++ LAD
Sbjct: 110 ELERKGSRGVVTKVQRGFVN----------VALDDGKDEVPFPG------RVWLVK-LAD 152
Query: 173 TLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDK------EDVTWLEENDLADWSEVK 226
+TY R + + LQ G+ + S + + LFG +D++ + +W++
Sbjct: 153 EVTYRRMNQTMEKLQ--GMVEAEYS-SFMRVLFGLSSPSPLPQDLSRDPQVGDIEWTD-- 207
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286
T +DSQK AI L R + +I GPPGTGKT L E+I + V++ +RVLV
Sbjct: 208 ------PTLNDSQKDAIRFAL-ASREIALIHGPPGTGKTHTLIELILQMVKRKQRVLVCG 260
Query: 287 PTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDL 346
P+N +VDN+VE+LS L I+R+G+PAR+ P+V SL + + A + + R + D
Sbjct: 261 PSNISVDNIVERLSPHKLLILRLGHPARLLPSVLHHSLDVLTNTSEAGAIVKDVRAEMDA 320
Query: 347 RKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR 406
++ + K I LK+L K +++E+ V ++S ++VVLAT G+ +R
Sbjct: 321 KQASIKKTKSGKERRDIYSDLKELRKEYRERERRCVSNLISGSKVVLATLHGSGGFQLRN 380
Query: 407 LDTFDLV-------------------GKRCILAGDQCQLAPVI--LSRKA---------- 435
+ FD+V ++ + AGD QL P I L+ KA
Sbjct: 381 -EEFDVVIIDEASQALEAQCWVPLLSARKAVCAGDHLQLPPTIKSLNSKANPRPKDERLP 439
Query: 436 -LEG-GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
++G + +L +R LH + LTTQYRM++ I + S+E+YG L+++ V + L
Sbjct: 440 IIKGMTLETTLFDRLLALHGPSIKRMLTTQYRMHEEIMRFPSEELYGSKLVAADAVKARL 499
Query: 494 LVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD---LAGTGSFY-----NEGEA 544
L D + V+ T PL+ +DT+ G EE G GS + NE EA
Sbjct: 500 LKDLEYGVQDNEDTSAPLIFIDTQ--GGDFPERSEEDDKDNPKKGRGSLHSESKSNEMEA 557
Query: 545 EIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREAD 604
+V+ H L+ AGV P IA+ +PY AQ+ L + P G+E+ ++D FQGRE +
Sbjct: 558 ALVLQHAGQLVGAGVRPEDIAIVTPYNAQLGVLAPLKEKFP---GIELGSVDGFQGREKE 614
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMN-----------------------------VAITRA 635
AVI+S+VRSN G VGFLG+ RR+N VA+TR
Sbjct: 615 AVIVSLVRSNPDGEVGFLGEKRRLNGEFNPSSSSPTPYNCSRHIAREITLTFLAVAMTRP 674
Query: 636 CKHVAVVCDSSTICHNT-FLARLLRHI 661
+ + V+ DS T+ + FL + + +
Sbjct: 675 RRSLTVIGDSETVKRGSNFLKKWMEFL 701
>gi|294506246|ref|YP_003570304.1| DNA helicase [Salinibacter ruber M8]
gi|294342574|emb|CBH23352.1| Putative DNA helicase [Salinibacter ruber M8]
Length = 766
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 195/668 (29%), Positives = 311/668 (46%), Gaps = 126/668 (18%)
Query: 83 GLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDS-RGACATSCIQGFVHNLGEDGCTI 141
GLGG H+ L R + LP + GD+V + D R T + + +I
Sbjct: 137 GLGGHHVKLMREQKGQPLPDHEIRVGDLVMISKTDPLRDDNPTGTVTQVTN------YSI 190
Query: 142 SVALESRHGDPTFSKLFGKSVRIDR----IQGL-----ADTLTYERNCEAL-MLLQKNGL 191
+ + + + +FGK +R DR + GL + + Y+R +AL L +G
Sbjct: 191 TASFDPKPD----GWVFGKGLRPDRREEVVSGLRVDLYVNDIPYQRMQDALAQLPTADGA 246
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
K+ ++ V E T + DW L+ D+Q++A+ +
Sbjct: 247 LKQLRDVSTGVASPAATEPAT------IDDWHNSALN--------DAQRRAVRKAVATD- 291
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+ +I GPPGTGKT E++ + V +GE VL TA +N AVDN+V L++ G ++VR+G+
Sbjct: 292 DVHLIHGPPGTGKTTTATEVLQQCVDRGESVLATAASNTAVDNVVAFLAEQGTDVVRLGH 351
Query: 312 PARISPAVASKSLGEIVKSKLASFVAEFERKKS----DLRKDL-------RQCLKD---- 356
PAR++ + + +L ++ ++ +R+K+ D ++DL R+ + D
Sbjct: 352 PARVNDRLRTHTLDAQIEDTDTHRRSQQKREKAFAVLDRQEDLTAPSGRWRRGMSDRKIK 411
Query: 357 -----------------DSLAA--GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
+ +AA +++ L + E+E + EVL +A VV +TN+
Sbjct: 412 ERAEQGRGSRGVPPERIEEMAAWLALQERADALFDEAEALEQEAIDEVLRAADVVCSTNS 471
Query: 398 GAADPLIRRLD--TFDLV-------------------GKRCILAGDQCQLAPVILSRKAL 436
A L LD TFD + +R +L GD QL P I +++A
Sbjct: 472 TAGSDL---LDGHTFDTLVIDEATQATAPSCWIPMTHARRAVLVGDHKQLPPTIQNQEAA 528
Query: 437 EGGIGVSLLERAATLHE------GVLATKLTTQYRMNDAIASWASKEMYGGSLISSST-- 488
G+ +L ER A HE G + + L QYRM++ I + ++ Y G L + T
Sbjct: 529 RRGLRRTLFERLAHHHETAPESPGSIRSLLRRQYRMHETIMGFPNRTFYDGRLEADDTAR 588
Query: 489 --------VASHLLVDTPFVKPTWI--TQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF 538
V H L P + I + PL+ +DT + EH +G+ S
Sbjct: 589 HRTLAGLGVPEHAL---PADERRAILDPEAPLVFVDTS------GIDAPEH-QRSGSHSR 638
Query: 539 YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSF 598
N EA+++ +L+ AG++PSAIAV SPY QV +R+D G E T+D F
Sbjct: 639 ENPREADLIAQLTTALLEAGMAPSAIAVISPYDDQV----DRIDRALAPDGPETDTVDGF 694
Query: 599 QGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
QGRE + V++S+VRSN GA+GFL + RR NVA+TRA + VV D+ST+ L +
Sbjct: 695 QGREKEIVLLSLVRSNDRGAIGFLDEPRRFNVAVTRAERKAVVVGDASTVAAADVLGAFV 754
Query: 659 RHIRYFGR 666
R+ GR
Sbjct: 755 RYAETTGR 762
>gi|149276566|ref|ZP_01882710.1| DNA helicase [Pedobacter sp. BAL39]
gi|149233086|gb|EDM38461.1| DNA helicase [Pedobacter sp. BAL39]
Length = 634
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 151/453 (33%), Positives = 233/453 (51%), Gaps = 74/453 (16%)
Query: 253 LLIIQGPPGTGKTG-LLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
L I+ GPPGTGKT L++ + A + Q +++LV AP+N AVD + EKL++ GLN++R+GN
Sbjct: 195 LAIVHGPPGTGKTTTLVQAVKALSKQDHQQILVAAPSNTAVDLLTEKLAEQGLNVLRIGN 254
Query: 312 PARISPAVASKSLG-------EIVKSK--------LASFVAEFERKKSDLRKDLRQCLKD 356
P+R+S + S +L E+ ++K + +++R K+ R+ L D
Sbjct: 255 PSRVSERLMSLTLDSRMAEHPEMKQAKALKKQANEYKNMAHKYKRNFGKAEKEQRKALFD 314
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--- 413
++ +++K++G E+ +++S A V+ AT GA IR+L ++
Sbjct: 315 EA-----HKIMKEVGNI----EQYVSDDIISKADVIAATLVGANHHTIRKLKYKTVIIDE 365
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH-EGVLA 457
++ I AGD CQL+P I S +A + G+ +L+E+ + E V+
Sbjct: 366 AGQALEPACWIPIIKSEKVIFAGDHCQLSPTIKSNEAAKKGLSNTLMEKMVNQYPESVVL 425
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
L QYRMN +I ++S+ Y G L + +VA+HLL D PLL +DT
Sbjct: 426 --LEEQYRMNRSIMEYSSEVFYQGKLKAHDSVATHLLYDD---------DKPLLFIDT-- 472
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV------FSLICAGVSPSAIAVQSPYV 571
S E H S N EA V + SL + +A+ SPY
Sbjct: 473 AGASFEEKTEGH-------SISNPDEASFVSKQLETLVQELSLRYSIEDFPTVAIISPYK 525
Query: 572 AQVQHLRERLDDLPE----AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
Q+ H++E L P+ + + V TIDSFQG+E D V+ISMVRSN G +GFL D RR
Sbjct: 526 QQIVHIKELLQHSPDIDKFKSKISVNTIDSFQGQERDVVVISMVRSNDEGIIGFLADIRR 585
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
MNVA+TRA K + V+ DS+T+C F + +
Sbjct: 586 MNVAMTRARKKLIVIGDSATLCRLPFYENFIAY 618
>gi|190409806|gb|EDV13071.1| DNA helicase A [Saccharomyces cerevisiae RM11-1a]
gi|207343464|gb|EDZ70918.1| YKL017Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259147817|emb|CAY81067.1| Hcs1p [Saccharomyces cerevisiae EC1118]
gi|323332808|gb|EGA74213.1| Hcs1p [Saccharomyces cerevisiae AWRI796]
Length = 683
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 247/473 (52%), Gaps = 56/473 (11%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLV 284
+ + +DSQK AI +N L II GPPGTGKT L E+I + + + ER+L+
Sbjct: 200 IKSFLNPNLNDSQKTAINFAINND--LTIIHGPPGTGKTFTLIELIQQLLIKNPEERILI 257
Query: 285 TAPTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
P+N +VD ++E+L+ + N ++R+G+PAR+ + SL + SK + V + ++
Sbjct: 258 CGPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLD--ILSKKNTIVKDISQE 315
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-- 400
L ++ ++ LK+ +K L K LKK+E +T+K+++ +++V+ T G++
Sbjct: 316 IDKLIQENKK-LKNYKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSR 374
Query: 401 --------DPLIRRLDTF--DLVGK------------------RCILAGDQCQLAPVILS 432
DP + DT D V + + +LAGD QL P I +
Sbjct: 375 ELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKT 434
Query: 433 R--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTV 489
K + + +L +R + K L QYRMN I + S MY G L++ +TV
Sbjct: 435 EDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATV 494
Query: 490 ASHLLVDTPFVKPTWI-----TQCPLLLLDTRLPYGSLSLGCEEHLDLAGT-GSFYNEGE 543
A+ LL+D P V T T+ PL+ DT+ G +E D A GS YNEGE
Sbjct: 495 ANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQ---GD---EFQETADEATILGSKYNEGE 548
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
IV H+ +L V ++I V SPY AQV HL++ + D + +E++T+D FQGRE
Sbjct: 549 IAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREK 608
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
D +I+S+VRSN VGFL + RR+NVAITR + + VV + + C N +L
Sbjct: 609 DVIILSLVRSNEKFEVGFLKEERRLNVAITRPRRQLVVVGNIEVLQRCGNKYL 661
>gi|323451631|gb|EGB07507.1| hypothetical protein AURANDRAFT_64586 [Aureococcus anophagefferens]
Length = 1181
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 174/494 (35%), Positives = 244/494 (49%), Gaps = 75/494 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
DD Q+ +A + L ++ GPPGTGKT + E+IARA +G+RVL A +N AVDN
Sbjct: 280 LDDHQRACVARA-EAEPALFLVHGPPGTGKTTTVVEVIARAAAKGQRVLACAASNVAVDN 338
Query: 295 MVEKLSDV------GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKK-SDLR 347
++E+++ ++R+G+PAR+S A + S+ E++++ + V E R + +LR
Sbjct: 339 LLERVAAAFRAAKSPRGLLRLGHPARLSEAASRYSMEEVLRTADGADVLEDARAELRNLR 398
Query: 348 KDL---RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE---VLSSAQ----------- 390
KD R K + R + +L KK K+ VK V + Q
Sbjct: 399 KDAAADRASAKRTAARRETRVVRAELRDREKKLAKDVVKRCAVVFRAGQESEIPNFKASY 458
Query: 391 ------VVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQ 425
VV ATN GAA L+ FDLV GKR +LAGD Q
Sbjct: 459 LGRFPLVVFATNVGAASRLLDDAPPFDLVVVDECAQALEISCWIPLLRGKRAVLAGDHRQ 518
Query: 426 LAPVILSRKALEGGIGVSLLERAATLHEGVLATK------------LTTQYRMNDAIASW 473
LAP + +LL+ ATL E ++ + L TQYRM+ I+ W
Sbjct: 519 LAPTVKCDDGDPTNAPAALLK--ATLFERLMDDRRPGRGEAHISLLLATQYRMHGDISEW 576
Query: 474 ASKEMYGGSL-ISSSTVASHLLVDT---PFVKPTWITQCPLLLLDTRLP--YGSLSLGCE 527
AS Y G L + S VA L + P V P + P++ +DT +
Sbjct: 577 ASAATYDGRLRAAPSCVARDLYAGSFLPPPVNPDDAIR-PMVHVDTAGLGFFDDSDAKTR 635
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ D G S N EA +V HV L+ AG+ + I V +PY AQV LR L E
Sbjct: 636 DDADEHGAASVANPREAAVVASHVALLLAAGLDAAQICVIAPYNAQVAALRGAL----EG 691
Query: 588 AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSST 647
GVE T+D +QG E DAV++S+ RSN AVGFL D RR+NVA+TRA +HVAVVCD+ T
Sbjct: 692 TGVEARTVDGYQGGERDAVVLSLTRSNEARAVGFLADERRLNVAVTRARRHVAVVCDADT 751
Query: 648 ICHNTFLARLLRHI 661
+ + F+A LL H+
Sbjct: 752 VRSSPFIAALLDHV 765
>gi|365764642|gb|EHN06164.1| Hcs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 683
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 247/473 (52%), Gaps = 56/473 (11%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLV 284
+ + +DSQK AI +N L II GPPGTGKT L E+I + + + ER+L+
Sbjct: 200 IKSFLNPNLNDSQKTAINFAINND--LTIIHGPPGTGKTFTLIELIQQLLIKNPEERILI 257
Query: 285 TAPTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
P+N +VD ++E+L+ + N ++R+G+PAR+ + SL + SK + V + ++
Sbjct: 258 CGPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLD--ILSKKNTIVKDISQE 315
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-- 400
L ++ ++ LK+ +K L K LKK+E +T+K+++ +++V+ T G++
Sbjct: 316 IDKLIQENKK-LKNYKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSR 374
Query: 401 --------DPLIRRLDTF--DLVGK------------------RCILAGDQCQLAPVILS 432
DP + DT D V + + +LAGD QL P I +
Sbjct: 375 ELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKT 434
Query: 433 R--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTV 489
K + + +L +R + K L QYRMN I + S MY G L++ +TV
Sbjct: 435 EDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATV 494
Query: 490 ASHLLVDTPFVKPTWI-----TQCPLLLLDTRLPYGSLSLGCEEHLDLAGT-GSFYNEGE 543
A+ LL+D P V T T+ PL+ DT+ G +E D A GS YNEGE
Sbjct: 495 ANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQ---GD---EFQETADEATILGSKYNEGE 548
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
IV H+ +L V ++I V SPY AQV HL++ + D + +E++T+D FQGRE
Sbjct: 549 IAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREK 608
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
D +I+S+VRSN VGFL + RR+NVAITR + + VV + + C N +L
Sbjct: 609 DVIILSLVRSNEKFEVGFLKEERRLNVAITRPRRQLVVVGNIEVLQRCGNKYL 661
>gi|452847528|gb|EME49460.1| hypothetical protein DOTSEDRAFT_84844 [Dothistroma septosporum
NZE10]
Length = 710
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 211/691 (30%), Positives = 320/691 (46%), Gaps = 135/691 (19%)
Query: 72 ICNLFVVSTSTGLGGMHLVLF----RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ NL V S TG G L+ V LP L GD +C +GA
Sbjct: 47 LLNLEVSSQRTGFAGKSLLDLGPDPAVSSTGELPEHGLRVGD-ICALAEQPKGA-ERKKE 104
Query: 128 QGFVHNLGEDGC-------TISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
+G + G +G TI+VAL D KL+ + LA+ +T++R
Sbjct: 105 RGRMEKRGAEGVVTRTQKSTITVALAKEDVDVPNGKLW--------LVKLANDVTHKRLT 156
Query: 181 EALMLLQKNGLHKRNPSIAAVVT--LFGDKE--DVTWLEENDLADWSEVKLDGIMGKTFD 236
+ + LQK PS + +T LFG V+ E W ++ L+
Sbjct: 157 QTMQKLQK-----MQPSAHSTLTQVLFGQTSISPVSRSELEKEVQWIDLALN-------- 203
Query: 237 DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMV 296
DSQK AI L + + +I GPPGTGKT L E+ + +++ R+LV P+N +VDN+V
Sbjct: 204 DSQKDAIRFALAAQE-VALIHGPPGTGKTHTLVELTLQLLKRQLRLLVCGPSNVSVDNIV 262
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVK-SKLASFV----AEFERKKSDLRKDLR 351
E+L+ + +VR+G+PAR+ P V S+ + + S A+ V AE + K++ +RK
Sbjct: 263 ERLAPHKVAMVRLGHPARLLPTVLKHSMEVLSRCSDAAAIVTDIRAEMDSKQASIRK--- 319
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ I LK+L K + +E V ++L S+ VVL+T GA ++ FD
Sbjct: 320 --TRSGRERKAIYGELKELRKEYRHREGRVVSDLLRSSHVVLSTLHGAGSYQLKD-QKFD 376
Query: 412 LV---------------------GKRCILAGDQCQLAPVILSRK---------------- 434
++ + ILAGD QL P I S+
Sbjct: 377 VIVVDEASQALEAQCWIPILASGASKLILAGDHLQLPPTIKSQNVKAEKAPDESATVAKA 436
Query: 435 ----------ALEGG----------------IGVSLLERAATLHEGVLATKLTTQYRMND 468
+L+ G + +L +R +LH G + LTTQYRM++
Sbjct: 437 DHLTGDVAKLSLKDGKADSGDSNRTKGDPVKLETTLFDRLLSLHGGKIKRMLTTQYRMHE 496
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCE 527
+I + S+ +Y LI++ V S LL D P+ V+ + T L+ DT+ G E
Sbjct: 497 SIMQYPSEALYEEQLIAAEAVKSRLLKDLPYEVQASEDTTEALVFWDTQ--GGDFPEKVE 554
Query: 528 EHLDLAGTG--------SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
+ D AG+ S NE EA IV V SL+ AGV IA+ +PY Q+ L +
Sbjct: 555 D--DEAGSKGKSSLLAESKVNELEALIVQRQVSSLVNAGVKAEDIAIVTPYNGQLALLSQ 612
Query: 580 RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
L AG+E+ ++D FQGRE +AV++S+VRSN VGFLG+ RR+NVA+TR +H+
Sbjct: 613 MLK--ARYAGIELGSVDGFQGREKEAVVVSLVRSNPQREVGFLGEKRRLNVAMTRPRRHL 670
Query: 640 AVVCDSSTICH-----NTFLARLLRH--IRY 663
++ DS TI +++A L H +RY
Sbjct: 671 CIIGDSETISRGSQFLRSWMAFLEEHADLRY 701
>gi|340520219|gb|EGR50456.1| predicted protein [Trichoderma reesei QM6a]
Length = 652
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 197/620 (31%), Positives = 301/620 (48%), Gaps = 86/620 (13%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG----NHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
I NL + S TGLGG ++ +G LP + GD+V V A S
Sbjct: 50 ITNLTISSQRTGLGGKTVLELGPDGATSSTGELPEHGIRTGDIVLVA-----EQPAGSAK 104
Query: 128 QGFVHNLGEDGC----------TISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYE 177
+ V L G +SVAL+ + FS R+ ++ LAD +TY
Sbjct: 105 KREVKELERKGARGVVTRVQRAAVSVALDEGKDEVLFSG------RVWMVK-LADEVTYR 157
Query: 178 RNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDD 237
R + + LQK G + + + + LFG +DLA EV + T +D
Sbjct: 158 RMNQTMEKLQKMGEAEYS---SFIRVLFGLSSPSPV--PSDLAASEEVGSIEWVDPTLND 212
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQK AI L R + +I GPPGTGKT L E+I + +++ +R+LV P+N +VDN+VE
Sbjct: 213 SQKDAIRFAL-ASREVALIHGPPGTGKTHTLIELILQMIKRNQRILVCGPSNISVDNIVE 271
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
+L+ + I+R+G+PAR+ P+V + SL + ++ A + + R + D ++ + K
Sbjct: 272 RLAPHKVPILRLGHPARLLPSVLNHSLDVLTQTSEAGAIIKDVRAEMDAKQASIKKTKSG 331
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
I LK+L K +++E+ V ++ ++VVLAT GA +R + FD+V
Sbjct: 332 RERKAIYTDLKELRKEYRERERRCVSNLVGGSKVVLATLHGAGGYQLRN-EEFDVVIIDE 390
Query: 414 ---------------GKRCILAGDQCQLAPVI---------LSRKALEGG---------- 439
K+ + AGD QL P I S+K ++G
Sbjct: 391 ASQALEAQCWVPLLSAKKAVCAGDHLQLPPTIKSLNSKMKPKSKKGVDGDAAAAAAPVIK 450
Query: 440 ---IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ +L +R LH + LTTQYRM++ I + S E+Y LI++ V + LL D
Sbjct: 451 GMTLETTLFDRLLALHGPSIKRMLTTQYRMHEKIMRFPSDELYDSKLIAADAVKARLLRD 510
Query: 497 TPF-VKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFY-----NEGEAEIVVH 549
+ V+ T P++ +DT+ G E + + GS + NE EA +V
Sbjct: 511 LDYDVESNEDTTEPVIFIDTQ--GGDFPERNEDDDKENPKRGSLHGESKSNEMEAALVRL 568
Query: 550 HVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIIS 609
HV L+ AGV P IAV +PY AQ+ L + P G+E+ ++D FQGRE +AVI+S
Sbjct: 569 HVKQLVEAGVRPEDIAVVTPYNAQLAALASLKEKFP---GIELGSVDGFQGREKEAVIVS 625
Query: 610 MVRSNTLGAVGFLGDSRRMN 629
+VRSN G VGFLG+ RR+N
Sbjct: 626 LVRSNPDGEVGFLGEKRRLN 645
>gi|432328902|ref|YP_007247046.1| DNA helicase, putative [Aciduliprofundum sp. MAR08-339]
gi|432135611|gb|AGB04880.1| DNA helicase, putative [Aciduliprofundum sp. MAR08-339]
Length = 650
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 200/711 (28%), Positives = 320/711 (45%), Gaps = 124/711 (17%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++++ L+ IER+ E+ EE+ + G+ + L I
Sbjct: 1 MEDYISHFVRLINIEREEEMRRHWEEIKRLT------------------GKKRERLGRAI 42
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL GLGG +LV F +P L GD+V V S G Q V+
Sbjct: 43 LNLRGKFIGRGLGGAYLVKF---SRKDMPKNELMVGDVVIV----SAGKVTPKNPQATVY 95
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
G +S + P F ++GK+VR+D A+ +T++R EA+ +++
Sbjct: 96 EKGSRYIVLSFS----KTPPKF--VYGKNVRVDL---YANDITFQRMLEAVNSIKREEYL 146
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
+ I L +E V + EN ++ Q++A+ + +
Sbjct: 147 RLRGIILGRANLEIHEEQVNF--EN---------------TRLNEFQRRAVRRSIGSE-- 187
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
L +I GPPGTGKT L E I + V++G +VL TA +N AVDN+VEKL+ +N+VR+G+P
Sbjct: 188 LFLIHGPPGTGKTTTLAEGIVQMVRRGFKVLATADSNVAVDNLVEKLAH-KVNVVRIGHP 246
Query: 313 ARISPAVASKSLGEIVKSKLASFVA-EFERKKSDLRKD----------LRQCLKDDSLA- 360
ARIS ++ +L IV + A E + +R++ R+ + DD +
Sbjct: 247 ARISKSIIEHTLDYIVSRDIEYRKAMELWERIDGMREEQSRYTKPTPQWRRGMGDDEIVY 306
Query: 361 ----------------AGIRQLLK------QLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
G+ Q +K + K KK E+ + VL +A V+ TN+
Sbjct: 307 LANASRSYRGVPVEVMKGMAQWIKIQRRIDEYVKRAKKMEERAIIRVLDNADVICTTNST 366
Query: 399 AADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGG 439
A ++R L FD V G R ++AGD QL P ++S A
Sbjct: 367 AGGEMLRDL-KFDFVVIDEATQAVEPSCLIPMLKGTRILMAGDHKQLPPTVMSYDA--KA 423
Query: 440 IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+ ++L ER ++ T L QYRMN+ I + S Y G L + TV + D
Sbjct: 424 LQLTLFERLIKIYPQASIT-LRIQYRMNEKIMEFPSNMFYRGLLEAHRTVKDRTIADVG- 481
Query: 500 VKPTWITQCPLLLLDTRLPYGSL---SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
+ P+ I++ + D P + L EE G+ S+ N GEA V V L+
Sbjct: 482 IDPSRISE----MRDICNPEEVIIFVDLETEEE-QRRGSTSYQNPGEARCVTRIVNCLLK 536
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
G+ I + +PY QV L+ + + +E+ ++D FQGRE + ++IS VR+N
Sbjct: 537 IGLKEKHIGIITPYDDQVDLLKSIIPN----EDLEIKSVDGFQGREKEVIVISFVRANDR 592
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
G +GFL D RR+NVAITRA + + +V +S T+ + L+ +I + G+V
Sbjct: 593 GELGFLTDLRRLNVAITRAKRKLIIVGNSKTLRAHPVYDSLIDYIEHRGKV 643
>gi|156839982|ref|XP_001643676.1| hypothetical protein Kpol_1057p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156114297|gb|EDO15818.1| hypothetical protein Kpol_1057p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 679
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 185/632 (29%), Positives = 308/632 (48%), Gaps = 92/632 (14%)
Query: 72 ICNLFVVSTSTGLGG-MHLVLFRVEG-NHRLPPTTLSPGDMVCVRVC------------- 116
I NL++ + TGL G ++L L + + + ++ GD+V V+
Sbjct: 43 INNLYLENIRTGLAGKIYLELGPYQAVDDEISKGSIKVGDVVAVKPSATSKGKSKAKTKS 102
Query: 117 -------DSRGACATSCIQGFVHNLGEDGCTISVALESRHGDP----TFSKLFGKSVRID 165
DS I G V + + C+I++ E++ D ++SKL+
Sbjct: 103 SKAEENGDSDRGADDLEITGVVFKITDKQCSITID-EAQEQDAMKLYSYSKLY------- 154
Query: 166 RIQGLADTLTYERNCEALMLLQK-NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSE 224
+ +T+TY+R + L++ GL P + L ++ + N +
Sbjct: 155 -LLKTVNTITYKRMESTMRKLKEFEGL----PDNRIIEYLLNARQFIRQEPSNKIT---- 205
Query: 225 VKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLV 284
++SQK AI L + II GPPGTGKT L E+I + V++G+RVLV
Sbjct: 206 -----FHNDQLNESQKDAIKFAL--ANDISIIHGPPGTGKTYTLVELILQLVEKGQRVLV 258
Query: 285 TAPTNAAVDNMVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVKS-KLASFVAEFER 341
P+N +VD ++E+L+ V G ++R+G+PAR+ A S SL + KS + V + R
Sbjct: 259 CGPSNISVDTILERLAKVLPGNLLLRIGHPARLLEANLSHSLDILSKSGDSGAIVRDIYR 318
Query: 342 KKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA- 400
+++ K D+ G +++ K+L K L+++E++ V +++ A+VV+AT G++
Sbjct: 319 DIDKTIASIKKVRKPDARREGWKEV-KELRKELRQRERKVVNDLILEAKVVVATLHGSSS 377
Query: 401 -------DPLIRRLDTF--DLVGK-------------------RCILAGDQCQLAPVILS 432
+ + + DT D V + + +LAGD QL P I +
Sbjct: 378 RELCGIYNQVPKLFDTLIIDEVSQSLEPQCWIPLISHYKSDFTKLVLAGDNKQLPPTIKT 437
Query: 433 RK--ALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVA 490
++ +G +L +R + L QYRMN+ I + SK+MYGG LI+ ++VA
Sbjct: 438 EDNDKVKVTLGTTLFDRLVKNYGDQFKLLLNVQYRMNEQIMEFPSKQMYGGKLIADASVA 497
Query: 491 SHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHH 550
+++L D P V T PL+ DT+ G L ++ D S +NE E +V H
Sbjct: 498 NNVLSDLPGVDSNDDTLPPLIWYDTQ---GDDFLEQADNED-GIVSSKFNENEVLLVKDH 553
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
+ LI + V AI V SPY AQ L+ + + + +E++T+D FQGRE + +++S+
Sbjct: 554 IIKLIESNVPQDAIGVISPYSAQTSLLKSLIQE--QYPLIEISTVDGFQGREKEVIVLSL 611
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
VRSN VGFL D RR+NVAI+R K + V+
Sbjct: 612 VRSNDKMEVGFLRDDRRLNVAISRPKKQLCVI 643
>gi|302506539|ref|XP_003015226.1| hypothetical protein ARB_06349 [Arthroderma benhamiae CBS 112371]
gi|291178798|gb|EFE34586.1| hypothetical protein ARB_06349 [Arthroderma benhamiae CBS 112371]
Length = 1131
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 200/675 (29%), Positives = 305/675 (45%), Gaps = 132/675 (19%)
Query: 63 RAPQELCDTICNLFVVSTSTGLGGMHLVLF----------------RVEGNHRLPPTTLS 106
RA Q + + + + TG+GG + F + E N RL ++
Sbjct: 450 RALQNAGHALTGMVLTNCRTGMGGREVGEFGLDTALSGSGRAKGASKDEDNTRLGVHGIT 509
Query: 107 PGDMVCVRVCDSRGACATS-----------CIQGFVHNLGE-----------DGCTISVA 144
GD+V V S A S ++G V +GE G
Sbjct: 510 VGDIVRVEEIASGKTTAKSKAGQDDEKGQRGLEGVVTRVGERSIWAAFGDRGKGKQDEDG 569
Query: 145 LESRHGDPTFSKLFGKSVRID--------RIQGLADTLTYERNCEALMLLQKNGLHKRNP 196
++ G + +FGKS I R++ LA+ +TY R + + L+K + +
Sbjct: 570 VDELWGRKLWLYVFGKSTYISITIILTEYRVK-LANDVTYRRMNQTMAKLEK---MQESE 625
Query: 197 SIAAVVTLFG-------DKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ LFG D E V LE M + +DSQK+AI L
Sbjct: 626 HSQLIRVLFGHTTPSPLDFESVGTLE--------------FMDPSLNDSQKEAIRFAL-A 670
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
R + +I GPPGTGKT L E+I + VQ+ +RVLV P+N +VDN+VE+L+ + +VR+
Sbjct: 671 SREIALIHGPPGTGKTHTLIELIRQLVQRKKRVLVCGPSNISVDNIVERLALHKVPLVRI 730
Query: 310 GNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
G+PAR+ +V SL + ++ A+ + + RK+ D ++ + ++ I LK+
Sbjct: 731 GHPARLLSSVLDHSLEVLSQTSEAAAIVKDVRKEIDSKQASIRKTRNGRERRAIYGDLKE 790
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
L K +++E + V ++S +QVVL T GA ++ FD+V
Sbjct: 791 LRKEFRERESKCVDNIVSGSQVVLGTLHGAGGHQLKN-QKFDIVLIDEASQAREAQCWIP 849
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEG-------------------------GIGVSLL 445
R +LAGD QL P I S+ + + ++L
Sbjct: 850 LLPASRVVLAGDHLQLPPTIKSKSSSNSDRTGSALWDKEDLHFNELSNTFDLRNLEITLF 909
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTW 504
+R +LH + LTTQYRM+ I + S E+Y LI++ V LL D P+ V+ T
Sbjct: 910 DRLLSLHGTGIKRMLTTQYRMHQKIMDFPSDELYESKLIAADAVRERLLKDLPYEVEDTD 969
Query: 505 ITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSP 561
T+ PL+ DT+ P S L S N+ EA +V HV +L AGV P
Sbjct: 970 DTREPLVFYDTQGGDFPEKSPDSNGISAKSLL-VESKCNDMEAAVVARHVENLASAGVRP 1028
Query: 562 SAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
IAV +PY AQV Q L+E+ L E+ ++D FQGRE +AV++S+VRSN
Sbjct: 1029 EDIAVITPYNAQVALLSQLLKEKFPTL------ELGSVDGFQGREKEAVVVSLVRSNPDH 1082
Query: 618 AVGFLGDSRRMNVAI 632
VGFLG+ RR+N +
Sbjct: 1083 EVGFLGEKRRLNAVM 1097
>gi|260939808|ref|XP_002614204.1| hypothetical protein CLUG_05690 [Clavispora lusitaniae ATCC 42720]
gi|238852098|gb|EEQ41562.1| hypothetical protein CLUG_05690 [Clavispora lusitaniae ATCC 42720]
Length = 733
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 210/716 (29%), Positives = 324/716 (45%), Gaps = 148/716 (20%)
Query: 64 APQELCD---TICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVC---VRVCD 117
+P++L + NL + + TGLGG LV ++ P +SPG + VR+ D
Sbjct: 32 SPKKLASFGLAVVNLVMQNMRTGLGGKTLVELALDPAVSRPEEEISPGSLRVGDIVRI-D 90
Query: 118 SRGACA--TSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKS----VRIDRIQGLA 171
G + + ++G + L G ++V+++ D T L+ + VR+ ++ L
Sbjct: 91 RMGNSSEDKTSLEGVITRLS--GKALTVSVDEDANDETLLGLYNNTGSDNVRMSVVK-LT 147
Query: 172 DTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIM 231
+++TY+R +A+ L+ L + S V L G+ + W +
Sbjct: 148 NSITYKRMMQAMKKLED--LADADKS-EVVRLLLGE---ARYTPRPKKGPWD------VF 195
Query: 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNA 290
+ ++SQ A+ L+ P+ II GPPGTGKT L E+I + GERVLV +N
Sbjct: 196 DDSLNESQVSAVDFALSS--PIAIIHGPPGTGKTYTLIELIKQLTFNHGERVLVCGASNI 253
Query: 291 AVDNMVEKLS-DVG---------------------------------------------- 303
+VDN++E+LS D G
Sbjct: 254 SVDNILERLSADFGGEKKERTTEKKKKDREGTTAKEKRAKREKNDKNAKNDKNAKRARAK 313
Query: 304 ----LNIVRVGNPARISPAVASKSLGEIVKSKLA------SFVAEFERKKSDLRKDLRQC 353
++RVG+PAR+ P SL + KS S + + E+ +++C
Sbjct: 314 KSTPEKLIRVGHPARLLPCNLQHSLDVLSKSSYGDSGDERSILRDIEKDIGSTLGQIKKC 373
Query: 354 LKDDSLAAGIRQL---LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA----------- 399
+ RQL LKQL + L+ +EK+ V+++L +AQVVLAT G+
Sbjct: 374 KR----YGERRQLWTELKQLKRELRTREKKIVRDLLVNAQVVLATLHGSGSNELFAVSKE 429
Query: 400 ---ADPLIRRLDTFDLVG-----------------KRCILAGDQCQLAPVILSRK---AL 436
A+P L D V +R ++AGD QL + SR+ AL
Sbjct: 430 FSPAEPFFDTL-VIDEVSQSLEPQCWIPLLAHLGIRRLVIAGDNMQLPATVKSREEAMAL 488
Query: 437 E------GGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTV 489
+ + +L +R LH L QYRMN+ I + S+ +Y G L +++ V
Sbjct: 489 QHKGSKVADLEYTLFDRLVDKLHGSEYKKLLNVQYRMNEKIMEFPSRTLYNGELRAAAGV 548
Query: 490 ASHLLVDTPFVKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAEI 546
LL D P V+ T T P + LDT+ P + G +G+GS N GE +
Sbjct: 549 RDILLCDLPNVQSTDETSVPCMWLDTQGGDFPEQADDAGANH---FSGSGSKLNPGEVAV 605
Query: 547 VVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAV 606
V HV +L+ AGV ++I V SPY AQ LR+ VEVAT+D FQGRE +A+
Sbjct: 606 VQRHVQALVDAGVDAASIGVISPYSAQTALLRKMACMF---GPVEVATVDGFQGREKEAI 662
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFLARLLRH 660
++S+VRSN VGFL D RR+NVA+TR +H+ VV D + + C FL+ R+
Sbjct: 663 VLSLVRSNDNREVGFLQDRRRLNVAMTRPKRHLCVVGDMALLDACGVRFLSEWARY 718
>gi|6322835|ref|NP_012908.1| Hcs1p [Saccharomyces cerevisiae S288c]
gi|465704|sp|P34243.1|HCS1_YEAST RecName: Full=DNA polymerase alpha-associated DNA helicase A
gi|395256|emb|CAA52266.1| unnamed protein product [Saccharomyces cerevisiae]
gi|486007|emb|CAA81852.1| DIP1 [Saccharomyces cerevisiae]
gi|151941528|gb|EDN59891.1| DNA helicase A [Saccharomyces cerevisiae YJM789]
gi|285813242|tpg|DAA09139.1| TPA: Hcs1p [Saccharomyces cerevisiae S288c]
gi|392298121|gb|EIW09219.1| Hcs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 683
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 247/473 (52%), Gaps = 56/473 (11%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLV 284
+ + +DSQK AI +N L II GPPGTGKT L E+I + + + ER+L+
Sbjct: 200 IKSFLNPNLNDSQKTAINFAINND--LTIIHGPPGTGKTFTLIELIQQLLIKNPEERILI 257
Query: 285 TAPTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
P+N +VD ++E+L+ + N ++R+G+PAR+ + SL + SK + V + ++
Sbjct: 258 CGPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLD--ILSKKNTIVKDISQE 315
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-- 400
L ++ ++ LK+ +K L K LKK+E +T+K+++ +++V+ T G++
Sbjct: 316 IDKLIQENKK-LKNYKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSR 374
Query: 401 --------DPLIRRLDTF--DLVGK------------------RCILAGDQCQLAPVILS 432
DP + DT D V + + +LAGD QL P I +
Sbjct: 375 ELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKT 434
Query: 433 R--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTV 489
K + + +L +R + K L QYRMN I + S MY G L++ +TV
Sbjct: 435 EDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATV 494
Query: 490 ASHLLVDTPFVKPTWI-----TQCPLLLLDTRLPYGSLSLGCEEHLDLAGT-GSFYNEGE 543
A+ LL+D P V T T+ PL+ DT+ G +E D A GS YNEGE
Sbjct: 495 ANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQ---GD---EFQETADEATILGSKYNEGE 548
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
IV H+ +L V ++I V SPY AQV HL++ + D + +E++T+D FQGRE
Sbjct: 549 IAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREK 608
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
D +I+S+VRSN VGFL + RR+NVA+TR + + VV + + C N +L
Sbjct: 609 DVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYL 661
>gi|341582257|ref|YP_004762749.1| DNA helicase [Thermococcus sp. 4557]
gi|340809915|gb|AEK73072.1| DNA helicase, putative [Thermococcus sp. 4557]
Length = 710
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 211/713 (29%), Positives = 333/713 (46%), Gaps = 129/713 (18%)
Query: 9 IQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQEL 68
+ +L++F + L+ +ER AE+E + E+ + GR +++
Sbjct: 1 MDEKLEKFISHLKVLVEMERKAEIEAMRLEMKRL------------------SGREREKV 42
Query: 69 CDTICNLFVVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L + + G L F V+ G R T +S GD+V V SR S +
Sbjct: 43 GRAVLGL-----NGKVVGEELGYFLVKYGRDREIKTEISVGDLVVV----SRRDPLKSDL 93
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
G V G+ I+VALE T + K VRID A+ +T++R E L L+
Sbjct: 94 VGTVVEKGK--RFITVALE------TVPEWALKGVRIDL---YANDITFKRWLENLEALR 142
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
++G A+ G +E EE++ +++ ++ + SQ++A+A L
Sbjct: 143 ESGRK-------ALELHLGLREP----EESEALEFTP------FDRSLNASQRRAVAKAL 185
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+I GP GTGKT L E+I + V++G RVL TA +N AVDN+VE+L D GL +V
Sbjct: 186 GSP-DFFLIHGPFGTGKTRTLAELIRQEVERGNRVLATAESNVAVDNLVERLVDSGLKVV 244
Query: 308 RVGNPARISPAVASKSL----------GE-----IVKSKLASFVAEFERKKSDLRKDL-- 350
RVG+P+R+S ++ +L GE ++ LA F + R+ L
Sbjct: 245 RVGHPSRVSRSLHETTLAYLITRHELYGELRELRVIGQNLAEKRDTFTKPSPKYRRGLSD 304
Query: 351 RQCLKDDSLAAGIR--------------QLLKQLGKTL---KKKEKETVKEVLSSAQVVL 393
++ L+ S G R ++ +Q+ KT +K E+ +E++ A VVL
Sbjct: 305 KEILRLASKGIGTRGVPARLIREMAEWIKINRQVQKTFDDARKLEERIAREIIREADVVL 364
Query: 394 ATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRK 434
TN+ A ++ ++D+ KR +LAGD QL P ILS K
Sbjct: 365 TTNSSAGLDVV-DYGSYDVAIIDEATQATIPSVLIPINRAKRFVLAGDHKQLPPTILSEK 423
Query: 435 ALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL 494
A E +G +L E + G + LT QYRMN+ + + S+E YGG + + ++ + L
Sbjct: 424 AKE--LGNTLFEGLIERYPGK-SEMLTVQYRMNERLMEFPSREFYGGRIEADESIRAITL 480
Query: 495 VDTPFVKPTWITQCPLLLLDTRLPYGSLSL----GCEEHLDLAGTGSFYNEG--EAEIVV 548
D P C L + P L G E+ + GS E EA +V
Sbjct: 481 ADLGVKSPA----CDGLWNEVLRPENVLVFVDTSGREDRFERQRYGSESRENPLEARLVK 536
Query: 549 HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVII 608
V L+ G++P I V +PY Q +R LPE VEV T+D +QGRE + +++
Sbjct: 537 EVVEKLLELGLNPEWIGVITPYDDQRDLIRSL---LPEE--VEVKTVDGYQGREKEVIVL 591
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
S VRSN G +GFL D RR+NV++TRA + + ++ DSST+ + RL+ +
Sbjct: 592 SFVRSNRKGELGFLKDLRRLNVSLTRAKRKLILIGDSSTLSVHPTYKRLVEFV 644
>gi|410077865|ref|XP_003956514.1| hypothetical protein KAFR_0C03880 [Kazachstania africana CBS 2517]
gi|372463098|emb|CCF57379.1| hypothetical protein KAFR_0C03880 [Kazachstania africana CBS 2517]
Length = 675
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 158/482 (32%), Positives = 248/482 (51%), Gaps = 52/482 (10%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
++SQ+ AI ++ + + II GPPGTGKT + EII + V++GERVLV P+N AVD
Sbjct: 205 NLNESQRDAIKFSIDNE--ISIIHGPPGTGKTYTIIEIIQQLVKRGERVLVCGPSNIAVD 262
Query: 294 NMVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA-----EFERKKSDL 346
++E+L+ V G ++R+G+PAR+ A S SL + K+ A + E +R S +
Sbjct: 263 TILERLAKVLPGNLLLRIGHPARLLEANLSHSLDILSKNSDAGAIVKDIYHEIDRTISSI 322
Query: 347 RKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI-- 404
RK + K+ A +LL+ K L+ KEK+ + E++ A+V+++T G++ +
Sbjct: 323 RK--IKSYKERKEAWNEVKLLR---KELRVKEKKVIDELILGAKVIVSTLHGSSSKELCN 377
Query: 405 ------RRLDTF--DLVG-------------------KRCILAGDQCQLAPVILSRK--A 435
+ DT D V KR ILAGD QL P + +
Sbjct: 378 IYNSTEKLFDTLIIDEVSQSMEPQCWIPLISHYKSNMKRLILAGDNKQLPPTVKTEDDVK 437
Query: 436 LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV 495
++ + +L +R ++ L QYRMN+ I +++S +MY G L++ +V LL
Sbjct: 438 IQSKLEKTLFDRLVEIYGDQFRKLLNVQYRMNENIMTFSSVQMYDGKLLADDSVRDKLLS 497
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI 555
D P V T PL+ DT+ G L E S +NE EA I + HV LI
Sbjct: 498 DIPGVDANDETNLPLIWYDTQ---GDDFLESTEEETSTIFQSKFNENEALIAMDHVKKLI 554
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
+ + AI + SPY AQV L++ + D + +E++T+D FQGRE + +I S+VRSN
Sbjct: 555 ESNIPEHAIGIISPYSAQVALLKKTISD--KYPTIEISTVDGFQGREKEVIIFSLVRSNE 612
Query: 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH--NTFLARLLRHIRYFGRVKHAEPG 673
VGFL D RR+NVA+TR K + V+ + T+ N +L R +++ + G
Sbjct: 613 KFEVGFLKDERRLNVAMTRPKKQLCVIGNIETLQRSGNKYLDSWGRWSEENSDIRYPDIG 672
Query: 674 SF 675
+
Sbjct: 673 DY 674
>gi|358057175|dbj|GAA97082.1| hypothetical protein E5Q_03757 [Mixia osmundae IAM 14324]
Length = 733
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 164/477 (34%), Positives = 237/477 (49%), Gaps = 64/477 (13%)
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
I+ + SQ+ A+ L+ R + +I GPPGTGKT L EII + V+ G+RVLV +N
Sbjct: 260 ILDDALNQSQQDAVKFALHA-REVALIHGPPGTGKTSTLIEIIRQLVRLGQRVLVCGASN 318
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD 349
AVDN+VE+L + + R+G+PARI A +L +A+ D+R D
Sbjct: 319 LAVDNIVERLQVHSVPLTRLGHPARILEATQRSTLDYQTAHSANGALAQ------DVRDD 372
Query: 350 LRQCLKDDSLAAGIRQ---------LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA 400
+ + D LA G Q +K L K L+ +E V+ A+VVL T GA
Sbjct: 373 IAKIFAD--LAKGKLQGKGRRAKLDEIKLLRKELRVREAGVTSSVIGQARVVLCTCHGAG 430
Query: 401 DPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVIL---------- 431
I R DTFD L ++ +LAGD QL P I
Sbjct: 431 SKQIMR-DTFDVAIIDEAAQALEGSCWIPILKAQKLVLAGDPLQLPPTIKTSDKDFKQAK 489
Query: 432 ---------SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
S+ + +L +R ++ + L+ QYRMN+ I +AS +Y G
Sbjct: 490 VSLASISKSSKLCSARNLETTLFDRLLAMYGAKIKCLLSIQYRMNERIMRFASDALYEGK 549
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG 542
L+++ V LL D K + P++ +DT G+ + T S YNE
Sbjct: 550 LVAALQVKDRLLCDLVETKGDDVLDHPVIFIDT---TGNDMYERADEETGVRTLSKYNEN 606
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGRE 602
EA VV H+ ++ AG+ P IAV SPY AQV LR L LP+ + V +IDS+QGRE
Sbjct: 607 EAVQVVKHISEIVSAGLPPKCIAVISPYNAQVSLLRSLLVHLPD---ISVGSIDSWQGRE 663
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI-CHNTFLARLL 658
A+ +IIS+VRSN VGFL +SRR+NVA+TRA + + VV D+ T+ +++L R +
Sbjct: 664 AECIIISLVRSNDQREVGFLKESRRLNVAMTRAKRQLCVVGDAGTVRTGSSYLERWM 720
>gi|294659099|ref|XP_461444.2| DEHA2F25388p [Debaryomyces hansenii CBS767]
gi|202953617|emb|CAG89859.2| DEHA2F25388p [Debaryomyces hansenii CBS767]
Length = 755
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 194/702 (27%), Positives = 316/702 (45%), Gaps = 126/702 (17%)
Query: 57 FLVSHG-RAPQELCDTICNLFVVSTSTGLGGMHLVLFRVE-----GNHRLPPTTLSPGDM 110
+L S+ + +L I NL V + GLGG ++ ++ + + +L GD+
Sbjct: 33 YLTSYSPKKLHQLGLAIINLVVTNIKNGLGGKTIIELEIDPALKSNDTEIQLGSLRVGDI 92
Query: 111 VCV-------------------------RVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
+ + R D G C + + + TIS+
Sbjct: 93 IKLDKMSNANTSETIQFKKASENSSKKKRGTDEEGKCQDESLDAVLIRINSKTVTISIEE 152
Query: 146 ESRHGD--PTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVT 203
++ ++ F ++R+ I L++++TY+R A+ L + L N S +
Sbjct: 153 DNSEEKVLSLYNNTFNDNIRM-WIVKLSNSITYKRMTTAMNKLSE--LTSSNKS-EIIQY 208
Query: 204 LFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTG 263
L G+ + + +K + SQK+AI +N+ + II GPPGTG
Sbjct: 209 LLGESQYAK------KSSGRSLKQKHFFNPNLNTSQKEAINFAINES-AITIIHGPPGTG 261
Query: 264 KTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDV-------------------- 302
KT L E+I + E+VLV P+N +VD ++E+LS +
Sbjct: 262 KTYTLIELIKQLTFNNDEKVLVCGPSNISVDTILERLSPIFNEEEVHTDKKKSRRAVKKS 321
Query: 303 ---GLN---IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL-- 354
G N ++R+G+PAR+ + SL + K+ + + + D+ KD+ L
Sbjct: 322 TSAGKNPEELIRIGHPARLLGSNLQHSLDILSKTNYDTGSNDNKEILKDIEKDISDTLGK 381
Query: 355 ----KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-- 408
++ + + LK K L+ +E++ V+++L A+VVL+T GA + L
Sbjct: 382 VKKCRNYAERRALWSDLKTYKKELRVRERKIVQDLLVGAKVVLSTLHGAGSYELTSLYKE 441
Query: 409 ---TFD-------------------------LVG----KRCILAGDQCQLAPVILSRKAL 436
FD LV KR ++AGD QL P + S+ L
Sbjct: 442 PTLNFDHDHPLFDTIIIDEVSQSLEPQCWIPLVNHLGCKRLVIAGDNMQLPPTVKSKDDL 501
Query: 437 EG------------GIGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMYGGSL 483
+ + ++L +R H G KL TQYRMN+ I + S E+Y G+L
Sbjct: 502 DALMRKLNIKDGVADLELTLFDRLIRDHNGSQFKKLLDTQYRMNEDIMRFPSNELYDGNL 561
Query: 484 ISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA-GTGSFYNEG 542
+ +V S L D P VKPT T P + DT+ ++ +A TGS YN+
Sbjct: 562 KAHDSVRSLTLEDLPSVKPTDDTSIPCVWYDTQGGNFPERASDDDSRAMAESTGSKYNDM 621
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGRE 602
E +V H+ +L+ AG++P+ I V SPY AQ L++ L + G+EV+T+D FQGRE
Sbjct: 622 EVLVVEQHLQNLLQAGITPADIGVISPYNAQASLLKKTLQS-RQIDGIEVSTVDGFQGRE 680
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
+A+IIS+VRSN +GFL D RR+NVA+TR KH+ ++ D
Sbjct: 681 KEAIIISLVRSNPNREIGFLADRRRLNVAMTRPKKHLCIIGD 722
>gi|323336740|gb|EGA78004.1| Hcs1p [Saccharomyces cerevisiae Vin13]
Length = 683
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 246/473 (52%), Gaps = 56/473 (11%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLV 284
+ + +DSQK AI +N L II GPPGTGKT L E+I + + + ER+L+
Sbjct: 200 IKSFLNPNLNDSQKTAINFAINND--LTIIHGPPGTGKTFTLIELIQQLLIKNPEERILI 257
Query: 285 TAPTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
P+N +VD ++E+L+ + N ++R+G+PAR+ + SL + SK + V + ++
Sbjct: 258 CGPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLD--ILSKKNTIVKDISQE 315
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-- 400
L ++ ++ LK+ +K L K LKK+E +T+K+++ +++V+ T G++
Sbjct: 316 IDKLIQENKK-LKNYKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSR 374
Query: 401 --------DPLIRRLDTF--DLVGK------------------RCILAGDQCQLAPVILS 432
DP + DT D V + + +LAGD QL P I +
Sbjct: 375 ELXSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKT 434
Query: 433 R--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTV 489
K + + +L +R + K L QYRMN I + S MY G L++ +TV
Sbjct: 435 EDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATV 494
Query: 490 ASHLLVDTPFVKPTWI-----TQCPLLLLDTRLPYGSLSLGCEEHLDLAGT-GSFYNEGE 543
A+ LL+D P V T T+ PL+ DT+ G +E D A GS YNEGE
Sbjct: 495 ANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQ---GD---EFQETADEATILGSKYNEGE 548
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
IV H+ +L V ++I V SPY AQV HL++ + D + +E++T+D FQGRE
Sbjct: 549 IAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREK 608
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
D +I+S+VRSN VGFL + RR+NVA TR + + VV + + C N +L
Sbjct: 609 DVIILSLVRSNEKFEVGFLKEERRLNVAXTRPRRQLVVVGNIEVLQRCGNKYL 661
>gi|302392833|ref|YP_003828653.1| DNA helicase [Acetohalobium arabaticum DSM 5501]
gi|302204910|gb|ADL13588.1| DNA helicase [Acetohalobium arabaticum DSM 5501]
Length = 747
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 191/721 (26%), Positives = 325/721 (45%), Gaps = 134/721 (18%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
+++++ +L+++ER+AE++ + E+ + G +E
Sbjct: 82 DKINDYVTEFEQLVQMEREAEMKKHELEMKNL------------------SGYEREEKGR 123
Query: 71 TICNLFVVSTSTGLGGMHLVLF-RVEGNHRLPPTTLSPGDMVCV------RVCDSRGACA 123
I +L GG +V F R LP + +S GD+V + R + G A
Sbjct: 124 AILHLRGRDQGEAFGGKKVVKFMRQRRGEELPDSEISVGDLVMLSKNQPLRDDNPTGTVA 183
Query: 124 TSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEAL 183
+I+V + P F +FGK +R D + +T++R +A+
Sbjct: 184 EKT-----------KYSITVVFD--ENPPGF--IFGKGLRADL---YVNDITFQRMLDAI 225
Query: 184 MLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAI 243
+++ +A + F ED+ + E++ S+V+ + + SQK+A+
Sbjct: 226 TEVEE-----AEGRLAELRDKFLGLEDIEFAEQD-----SDVEF---KNQNLNQSQKQAV 272
Query: 244 ALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVG 303
+ + ++ GPPGTGKT EII + + + +L TA +N AVDN+VE+L
Sbjct: 273 RQAMAAE-DFFLVHGPPGTGKTMTSIEIIRQEIGPDKNILATADSNTAVDNLVERLVRDD 331
Query: 304 LNIVRVGNPARISPAVASKSLGEIVKS--------KLASFVAEFERKKSDL--------- 346
+ +VRVG+P R++P + +L +++ KL E K+ DL
Sbjct: 332 VEVVRVGHPVRVTPVLREHTLDYLIEDHPKYQESLKLRQEADELLDKQDDLTHPSGRWRR 391
Query: 347 ---RKDLRQCLKDDSLAAGI--------------RQLLKQLGKTLKKKEKETVKEVLSSA 389
+ +R+ + S A G+ ++ + L + + E+E V ++LS+A
Sbjct: 392 GMSNQQIREQAQQGSGARGVPLDKIKEMAEWLELQEEIDDLFAEMDQLEEEAVNDLLSTA 451
Query: 390 QVVLATNTGAADPLIRRLDTF--DLV-------------------GKRCILAGDQCQLAP 428
VV TN+ A + LD F DL+ R +LAGD QL P
Sbjct: 452 DVVCTTNSTAGSEV---LDNFWADLLVVDEATQATEPAVLIPLTKTDRVVLAGDHKQLPP 508
Query: 429 VILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSST 488
ILS +A + G+ +L ER ++ + L QYRMND I +++++E Y G L S+
Sbjct: 509 TILSERAKQQGLNYTLFERLIDMYGAKIRQMLRVQYRMNDLIMNFSNREFYNGLLESADG 568
Query: 489 VASHLLVDTPFVKPT--------WITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540
+ H L D P + P+ DT+ + E + + S N
Sbjct: 569 IGGHTLADLDVSAPNGSRPAEKALVFDQPIAFFDTQ------GMNAPER-SKSDSTSVEN 621
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQG 600
EA++V+ + IAV +PY QV+ + ++LD GVEV T+D FQG
Sbjct: 622 PIEADLVIEIAEVAKQLDFAEEDIAVIAPYKDQVELIDDKLD----LQGVEVNTVDGFQG 677
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
RE + +I+S VRSN G +GFL D RR+NV++TRA + + ++ D+STI N RL+ +
Sbjct: 678 REKEVIILSFVRSNEYGNIGFLRDLRRLNVSLTRAKRKLIMIGDASTITSNEVYERLIEY 737
Query: 661 I 661
+
Sbjct: 738 V 738
>gi|256271560|gb|EEU06603.1| Hcs1p [Saccharomyces cerevisiae JAY291]
Length = 683
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 247/473 (52%), Gaps = 56/473 (11%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLV 284
+ + +DSQK AI +N L II GPPGTGKT L E+I + + + ER+L+
Sbjct: 200 IKSFLNPNLNDSQKTAINFAINND--LTIIHGPPGTGKTFTLIELIQQLLIKNPEERILI 257
Query: 285 TAPTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
P+N +VD ++E+L+ + N ++R+G+PAR+ + SL + SK + V + ++
Sbjct: 258 CGPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLD--ILSKKNTIVKDISQE 315
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-- 400
L ++ ++ LK+ +K L K LKK+E +T+K+++ +++V+ T G++
Sbjct: 316 IDKLIQENKK-LKNYKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSR 374
Query: 401 --------DPLIRRLDTF--DLVGK------------------RCILAGDQCQLAPVILS 432
DP + DT D V + + +LAGD QL P I +
Sbjct: 375 ELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKT 434
Query: 433 R--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTV 489
K + + +L +R + K L QYRMN I + S MY G L++ +TV
Sbjct: 435 EDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATV 494
Query: 490 ASHLLVDTPFVKPTWI-----TQCPLLLLDTRLPYGSLSLGCEEHLDLAGT-GSFYNEGE 543
A+ LL+D P V T T+ PL+ DT+ G +E D A GS YNEGE
Sbjct: 495 ANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQ---GD---EFQETADEATILGSKYNEGE 548
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
IV H+ +L V ++I V SPY AQV HL++ + D + +E++T+D FQGRE
Sbjct: 549 IAIVKEHIENLRSFNVPGNSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREK 608
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
D +I+S+VRSN VGFL + RR+NVA+TR + + VV + + C N +L
Sbjct: 609 DVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYL 661
>gi|223478666|ref|YP_002583052.1| DNA helicase [Thermococcus sp. AM4]
gi|214033892|gb|EEB74718.1| DNA helicase [Thermococcus sp. AM4]
Length = 660
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 212/729 (29%), Positives = 332/729 (45%), Gaps = 161/729 (22%)
Query: 10 QSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
+L +F ++ L+ +ER AE+E + E+ + GR +++
Sbjct: 4 NEKLSKFIAKLKVLIEMERKAEIEAMRAEMKRL------------------SGREREKVG 45
Query: 70 DTICNLFVVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
+ L + + G L F V+ G R T +S GD+V + S+ S +
Sbjct: 46 RAVLGL-----NGKVIGEELGYFLVKYGREREIKTEISVGDLVVI----SKRDPLKSDLV 96
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V G+ I+VALE T + K+VRID A+ +T++R E L L++
Sbjct: 97 GTVVEKGK--RFITVALE------TVPEWALKNVRIDL---YANDITFKRWLENLENLRE 145
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
+G A+ G ++ EE + +++ K+ + SQ++AIA L
Sbjct: 146 SGRK-------ALEFYLGLRKH----EEGEEVEFTP------FDKSLNASQRRAIAKALG 188
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+I GP GTGKT L E+I + V +G RVL TA +N AVDN+VE+L D GL +VR
Sbjct: 189 SP-DFFLIHGPFGTGKTRTLVELIRQEVARGHRVLATAESNVAVDNLVERLVDSGLKVVR 247
Query: 309 VGNPARISPAVASKSL-------------------GEIVKSKLASFVA---EFERKKSDL 346
VG+P+R+S + +L GE +K K +F ++ R +D
Sbjct: 248 VGHPSRVSKKLHETTLAYLMTQHELYGELRELRVIGENLKEKRDTFTKPAPKYRRGLTD- 306
Query: 347 RKDLRQCLKDDSLAAGIR----QLLKQLGKTLK-------------KKEKETVKEVLSSA 389
RQ L+ G R +L++++ + LK K E+ +E++ A
Sbjct: 307 ----RQILRLAEKGIGTRGVSARLIREMAQWLKINEQVQKTFDDARKLEERIAREIIREA 362
Query: 390 QVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVI 430
VVL TN+ A ++ ++D+ +R +LAGD QL P I
Sbjct: 363 DVVLTTNSSAGLEVV-DYGSYDVAVIDEATQATIPSVLIPINRARRFVLAGDHRQLPPTI 421
Query: 431 LSRKALEGGIGVSLLERAATLHEGVL------ATKLTTQYRMNDAIASWASKEMYGGSLI 484
LS KA E + TL EG++ + LT QYRMN+ + + S+E Y G +
Sbjct: 422 LSEKA---------KELSKTLFEGLIERYPGKSEMLTVQYRMNERLMEFPSREFYDGRIE 472
Query: 485 SSSTVASHLLVDTPFVKP----TWIT----QCPLLLLDTRLPYGSLSLGCEEHLDLAGTG 536
+ +V L D P W + L+ +DT G E+ + G
Sbjct: 473 ADESVRGITLADLGVKSPEEGDAWAKVLKPENVLVFIDT--------AGREDRFERQRYG 524
Query: 537 SFYNEG--EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD-LPEAAGVEVA 593
S E EA +V V L+ GV P I V SPY Q R+ + LPE +EV
Sbjct: 525 SESRENPLEARLVKEAVEGLLSLGVKPEWIGVISPYDDQ----RDLISSLLPEE--IEVK 578
Query: 594 TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTF 653
T+D +QGRE + +++S VRSN G +GFL D RR+NV++TRA + + ++ DSST+ +
Sbjct: 579 TVDGYQGREKEVIVLSFVRSNRKGELGFLKDLRRLNVSLTRAKRKLILIGDSSTLSSHPT 638
Query: 654 LARLLRHIR 662
RL+ +R
Sbjct: 639 YKRLVEFVR 647
>gi|83816360|ref|YP_444497.1| DNA helicase [Salinibacter ruber DSM 13855]
gi|83757754|gb|ABC45867.1| putative DNA helicase [Salinibacter ruber DSM 13855]
Length = 707
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 192/663 (28%), Positives = 305/663 (46%), Gaps = 114/663 (17%)
Query: 83 GLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDS-RGACATSCIQGFVHNLGEDGCTI 141
GLGG H+ L R + LP + GD+V + D R T + + +I
Sbjct: 78 GLGGHHVKLMREQKGQPLPDHEIRVGDLVMISKTDPLRDDNPTGTVTQVTN------YSI 131
Query: 142 SVALESRHGDPTFSKLFGKSVRIDR----IQGL-----ADTLTYERNCEALMLL-QKNGL 191
+ + + + +FGK +R DR + GL + + Y+R +AL L +G
Sbjct: 132 TASFDPK----PDGWVFGKGLRPDRREEVVSGLRVDLYVNDIPYQRMQDALAKLPTADGA 187
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
K+ ++ V E + DW L+ D+Q++A+ +
Sbjct: 188 LKQLRDVSTGVASPAATEPAP------IDDWHNSALN--------DAQRRAVRKAVATD- 232
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+ +I GPPGTGKT E++ + V +GE VL TA +N AVDN+V L++ G ++VR+G+
Sbjct: 233 DVHLIHGPPGTGKTTTATEVLQQCVDRGESVLATAASNTAVDNVVAFLAEQGTDVVRLGH 292
Query: 312 PARISPAVASKSLGEIVKSKLASFVAEFERKKS----DLRKDL-------RQCLKD---- 356
PAR++ + + +L ++ ++ +R+K+ D ++DL R+ + D
Sbjct: 293 PARVNDRLRTHTLDAQIEDTDTHRRSQQKREKAFAVLDRQEDLTAPSGRWRRGMSDRKIK 352
Query: 357 -----------------DSLAA--GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
+ +AA +++ L + E+E + EVL +A VV +TN+
Sbjct: 353 ERAEQGRGSRGVPPERIEEMAAWLALQERADALFDEAEALEQEAIDEVLGAADVVCSTNS 412
Query: 398 GAADPLIRRLD--TFDLV-------------------GKRCILAGDQCQLAPVILSRKAL 436
A L LD TFD + +R +L GD QL P I +++A
Sbjct: 413 TAGSDL---LDGHTFDTLVIDEATQATAPSCWIPMTHARRAVLVGDHKQLPPTIQNQEAA 469
Query: 437 EGGIGVSLLERAATLHE------GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVA 490
G+ +L ER A HE G + + L QYRM++ I + ++ Y G L + T
Sbjct: 470 RRGLRHTLFERLAHHHETAPEAPGSIRSLLRRQYRMHETIMGFPNRTFYDGRLEADDTAR 529
Query: 491 SHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL------SLGCEEHLDLAGTGSFYNEGEA 544
L D + +LD P SL + EH +G+ S N EA
Sbjct: 530 HRTLADLGVPEHALPADERRAILD---PEASLVFVDTSGIDAPEH-QRSGSHSRENPREA 585
Query: 545 EIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREAD 604
+++ +L+ AGV+PSAIAV SPY QV +R+D G E T+D FQGRE +
Sbjct: 586 DLIAQLTTALLEAGVAPSAIAVISPYDDQV----DRIDRALAPDGPETDTVDGFQGREKE 641
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYF 664
V++S+V SN GA+GFL + RR NVA+TRA + VV D+ST+ L +R+
Sbjct: 642 IVLLSLVHSNDRGAIGFLDEPRRFNVAVTRAERKAVVVGDASTVAAADVLGAFVRYAETT 701
Query: 665 GRV 667
GR
Sbjct: 702 GRA 704
>gi|408388301|gb|EKJ67987.1| hypothetical protein FPSE_11798 [Fusarium pseudograminearum CS3096]
Length = 652
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 198/625 (31%), Positives = 299/625 (47%), Gaps = 95/625 (15%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEGN----HRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ NL V TGLGG +V + LP L GD+V V A S
Sbjct: 51 LTNLVVSGQRTGLGGRTVVELSPDAATGSADELPEHGLRTGDIVLVA-----EQPAGSAK 105
Query: 128 QGFVHNLGEDGCT----------ISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYE 177
+ V +L + G +SVA++ + F+ R+ ++ LAD +TY+
Sbjct: 106 KREVKDLEKKGARGVVTKVRREWVSVAIDEGKEEVAFTG------RVWAVK-LADEVTYK 158
Query: 178 RNCEALMLLQKNGLHKRNPSIAAVVT--LFGDKE------DVTWLEENDLADWSEVKLDG 229
R M L+K N S + +T LFG D+T E DW
Sbjct: 159 R-----MNWTMEKLNKMNESEYSSLTRVLFGLSSPSPVAADLTKDESVGNLDW------- 206
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
T ++SQK AI L + +I GPPGTGKT L E+I + ++ +R+LV P+N
Sbjct: 207 -FDPTLNESQKDAIRFALASLE-VALIHGPPGTGKTHTLIELILQMIRLEQRILVCGPSN 264
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD 349
+VDN+VE+L+ + I+R+G+PAR+ P+V SL + ++ A + + R + D ++
Sbjct: 265 ISVDNVVERLAPHKVPILRLGHPARLLPSVVDHSLDVLTQTSEAGAIVKDIRTEMDTKQA 324
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
+ K I LK+L K +++E+ V ++ ++VVLAT GA +R +
Sbjct: 325 SIKKTKSGKERKAIYNDLKELRKEFRERERRCVSTLIGGSKVVLATLHGAGGYQLRN-EE 383
Query: 410 FDLV-------------------GKRCILAGDQCQLAPVILS---------RKALE---- 437
FD+V K+ + AGD QL P I S ++ +E
Sbjct: 384 FDVVIIDEASQALEAQCWVPLVSAKKVVCAGDHLQLPPTIKSTNTKVKAPVKEGVEITKG 443
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT 497
+ V+L +R LH + LTTQYRM+++I + S E+Y LI++ V LL D
Sbjct: 444 ATLEVTLFDRLLALHGPSIKRMLTTQYRMHESIMRFPSDELYDSKLIAADAVKHRLLKDL 503
Query: 498 PF-VKPTWITQCPLLLLDTRLPYGSLSLGCEE---HLDLAGTGSFY-----NEGEAEIVV 548
+ V+ T P++ +DT+ G EE G S + NE EA +V
Sbjct: 504 EYEVEDNEDTNEPVIFIDTQ--GGDFPEKNEEDDKDTPKKGKASLHGDSKSNEMEAALVQ 561
Query: 549 HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVII 608
HV L+ AGV P IAV +PY AQ+ L D P G+E+ ++D FQGRE +AVI+
Sbjct: 562 QHVKKLVAAGVRPEDIAVVTPYNAQLAVLAPLKDKFP---GIELGSVDGFQGREKEAVIV 618
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAIT 633
S+VRSN+ G VGFLG+ RR+N +T
Sbjct: 619 SLVRSNSEGEVGFLGERRRLNGKVT 643
>gi|409099302|ref|ZP_11219326.1| ATPase AAA [Pedobacter agri PB92]
Length = 637
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 152/469 (32%), Positives = 239/469 (50%), Gaps = 75/469 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
++SQ++A+ + L I+ GPPGTGKT L I + +++LV AP+N AVD
Sbjct: 181 LNESQQQAVHKIVTANH-LAIVHGPPGTGKTTTLVHAIKSLTKHYDQKILVVAPSNTAVD 239
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLG---------EIVKS------KLASFVAE 338
+ EKL+ GLN++R+GNPAR+S + + +L + VKS + + +
Sbjct: 240 LLTEKLAAEGLNVIRIGNPARVSDRLLASTLEHKMADHPDMKSVKSLKKQANEFKNMAHK 299
Query: 339 FERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
++R +D R+ L D++ ++GK ++K E+ + + S AQ++ AT G
Sbjct: 300 YKRSFGKAERDQRKALFDEA---------HKIGKEVEKTEQYIMDNLFSKAQIITATLVG 350
Query: 399 AADPLIRRLDTFDLV------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
A +R L +V ++ +LAGD QL+P I S +A G+
Sbjct: 351 ANHYTVRNLKYNTVVIDEAGQALEPACWIPILKAEKVVLAGDHFQLSPTIKSSEAGRNGL 410
Query: 441 GVSLLERAATLH-EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+LLE++ +LH E V+ L QYRM+++I ++S+ Y L + VA HL+
Sbjct: 411 SKTLLEKSVSLHPESVVL--LNEQYRMHESIMGYSSQVFYNSQLHAHHAVARHLV----- 463
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGV 559
+ PL +DT GC L GT + N EA +V H+ +LI
Sbjct: 464 ----FADDEPLAFIDT--------AGCSFDEKLDGTST-TNPDEATFLVTHLSALIQELE 510
Query: 560 SPS------AIAVQSPYVAQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIIS 609
S +IA+ SPY QVQ ++ +++ + + V TIDSFQG+E D V IS
Sbjct: 511 SKETIVDFPSIAIVSPYKQQVQIVKMLVEENELLMAHQDKISVNTIDSFQGQERDVVYIS 570
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
+ RSN G++GFL D+RRMNVA+TRA K + V+ DS+T+ F A +
Sbjct: 571 LTRSNADGSIGFLADTRRMNVAMTRARKKLVVIGDSATLSKAKFYADFI 619
>gi|349579545|dbj|GAA24707.1| K7_Hcs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 683
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 246/473 (52%), Gaps = 56/473 (11%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLV 284
+ + +DSQK AI +N L II GPPGTGKT L E+I + + + ER+L+
Sbjct: 200 IKSFLNPNLNDSQKTAINFAINND--LTIIHGPPGTGKTFTLIELIQQLLIKNPEERILI 257
Query: 285 TAPTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
P+N +VD ++E+L+ + N ++R+G+PAR+ + SL + SK + V + ++
Sbjct: 258 CGPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLD--ILSKKNTIVKDISQE 315
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-- 400
L ++ ++ LK+ +K L K LKK+E +T+K+++ +++V+ T G++
Sbjct: 316 IDKLIQENKK-LKNYKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSR 374
Query: 401 --------DPLIRRLDTF--DLVGK------------------RCILAGDQCQLAPVILS 432
DP + DT D V + + +LAGD QL P I +
Sbjct: 375 ELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKT 434
Query: 433 R--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTV 489
K + + +L +R + K L QYRMN I + S MY G L++ +TV
Sbjct: 435 EDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATV 494
Query: 490 ASHLLVDTPFVKPTWI-----TQCPLLLLDTRLPYGSLSLGCEEHLDLAGT-GSFYNEGE 543
A+ LL+D P V T T+ PL+ DT+ G +E D A GS YNE E
Sbjct: 495 ANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQ---GD---EFQETADEATILGSKYNEDE 548
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
IV H+ +L V ++I V SPY AQV HL++ + D + +E++T+D FQGRE
Sbjct: 549 IAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREK 608
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
D +I+S+VRSN VGFL + RR+NVA+TR + + VV + + C N +L
Sbjct: 609 DVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYL 661
>gi|392964636|ref|ZP_10330056.1| AAA ATPase [Fibrisoma limi BUZ 3]
gi|387846019|emb|CCH52102.1| AAA ATPase [Fibrisoma limi BUZ 3]
Length = 632
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 231/452 (51%), Gaps = 72/452 (15%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
L I+ GPPGTGKT + + I ++Q ++VLV AP+N AVD + E+L D GLN++RVGN
Sbjct: 195 LAIVHGPPGTGKTTTIVQAIKALIRQANQKVLVVAPSNTAVDLLSERLHDQGLNVLRVGN 254
Query: 312 PARISPAVASKSLGEIVK---------------SKLASFVAEFERKKSDLRKDLRQCLKD 356
PAR+S + + +L V ++ + +++R+ ++ R+ L D
Sbjct: 255 PARVSERLMALTLDHKVNEHPYMKEAKKLKKQANEFRNMAHKYKRQFGKAEREQRKALFD 314
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--- 413
++ ++ K + E+ + ++++ AQV+ AT GA +R L +V
Sbjct: 315 EA---------HRIMKDVANSEQYVIDDLIARAQVITATLVGANHHTVRNLTYHTVVIDE 365
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
++ +LAGD CQL P I S +A G+ +LLE+ +H ++
Sbjct: 366 AGQALEPACWIPILKAQKVVLAGDHCQLPPTIKSPEAARRGLSETLLEKCIAMHPEAVSL 425
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRM++ I ++S+ Y L + ++VA H L D L+ +DT
Sbjct: 426 -LDEQYRMHEHIMGYSSEVFYEKKLKAHASVARHTLFDG---------DTSLVFVDT--- 472
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC---AGVSPS---AIAVQSPYVA 572
G +E LD GT S N EA ++V H+ L+ P IAV SPY
Sbjct: 473 ---AGCGFDEKLD--GTSST-NPDEAALLVKHLTQLVADLSTYYKPQDFPTIAVISPYKQ 526
Query: 573 QVQHLRERLDDLPE----AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
Q+ L+E++ + PE + + V TIDSFQG+E D V ISMVRSN G +GFL D RRM
Sbjct: 527 QIAILKEQIANTPELQPYSHVISVNTIDSFQGQERDIVYISMVRSNADGDIGFLADIRRM 586
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
NVA+TRA K + +V DS+T+ F A + +
Sbjct: 587 NVAMTRARKKLVIVGDSATLAGLPFYADFIAY 618
>gi|365759666|gb|EHN01443.1| Hcs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 682
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 157/480 (32%), Positives = 244/480 (50%), Gaps = 73/480 (15%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLVTA 286
+ +DSQK AI N L II GPPGTGKT L E+I + + + +R+L+
Sbjct: 200 SFLNPNLNDSQKAAINFATNND--LTIIHGPPGTGKTFALIELIQQLLIKNPEKRILICG 257
Query: 287 PTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKS 344
P+N +VD ++E+L+ + N ++R+G+PAR+ + SL + SK + V
Sbjct: 258 PSNISVDTILERLTPLVSNNLLLRIGHPARLLDSNKRHSLD--ILSKKNTIV-------R 308
Query: 345 DLRKDLRQCLKDDSLAAGIRQL------LKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
D+ +++ + ++++ +Q +K L K LKK+E +T+K+++ +++V+ T G
Sbjct: 309 DISQEIDKLIQENKKLKNYKQRRENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHG 368
Query: 399 AA----------DPLIRRLDTF--DLVGK------------------RCILAGDQCQLAP 428
++ DP ++ DT D V + + ILAGD QL P
Sbjct: 369 SSSRELCSLYRNDPNVKLFDTLIIDEVSQAMEPQCWIPLIAHQNQFDKLILAGDNKQLPP 428
Query: 429 VILSR--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLIS 485
I + + + + +L +R + K L QYRMN+ I + S+ MY G LI+
Sbjct: 429 TIKTEDDQNVIRNLETTLFDRLLKIFPKREMIKFLNIQYRMNEKIMEFPSQSMYHGKLIA 488
Query: 486 SSTVASHLLVD------TPFVKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTG 536
+TVAS LL+D +P T+ PL+ DT+ P E D G
Sbjct: 489 DATVASRLLIDISSVDVSPSGDDDIDTKLPLIWYDTQGDEFP--------ETADDATILG 540
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATID 596
S YNEGE IV H+ SL V +I V SPY AQV HL+ + D E +E++T+D
Sbjct: 541 SKYNEGEIAIVKKHIESLKSLNVQQDSIGVISPYNAQVSHLKRLIHDKLELNNIEISTVD 600
Query: 597 SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
FQGRE D +I+S+VRSN VGFL + RR+NVA+TR + + VV + + C N +L
Sbjct: 601 GFQGREKDVIILSLVRSNEEFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLRRCGNKYL 660
>gi|256421450|ref|YP_003122103.1| ATPase AAA [Chitinophaga pinensis DSM 2588]
gi|256036358|gb|ACU59902.1| AAA ATPase [Chitinophaga pinensis DSM 2588]
Length = 635
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 151/448 (33%), Positives = 229/448 (51%), Gaps = 74/448 (16%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
L I+ GPPGTGKT L + I ++Q +++LV AP+N AVD + EKLS+ GLN++RVGN
Sbjct: 196 LAIVHGPPGTGKTTTLVQAIKALIKQDNKQILVVAPSNTAVDLLSEKLSEEGLNVLRVGN 255
Query: 312 PARISPAVAS----------KSLGEIVKSK-----LASFVAEFERKKSDLRKDLRQCLKD 356
PAR+S ++S S+ EI + K +++R ++ R+ L D
Sbjct: 256 PARVSERLSSLTLDSRMTEHASMKEIKRLKKQANEFRDMAHKYKRNFGKAEREQRKALFD 315
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--- 413
++ + + K+++ E+ + ++++ AQ++ AT GA +R+L +V
Sbjct: 316 EA---------RNIMKSVENTEQYIMDDLMAKAQIITATLVGANHYTVRKLKYHTIVIDE 366
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH-EGVLA 457
++ ILAGD CQL+P + S +A G+ +LLE+ LH E V+
Sbjct: 367 AGQALEPACWIPILKAQKVILAGDHCQLSPTVKSDEAARKGLSTTLLEKCIALHPESVVL 426
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
L QYRM++ I ++S Y L + ++VA+H L + PL +DT
Sbjct: 427 --LEEQYRMHEMIMGYSSAVFYADKLKAHASVAAHTL---------FPDDMPLSFVDT-- 473
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC---AGVSPS---AIAVQSPYV 571
GC GT S N EA + H+ + P +IA+ SPY
Sbjct: 474 ------AGCGFDEKTEGT-STTNPEEAAFLFKHLRQFVTGLHTHYQPQQFPSIAIISPYK 526
Query: 572 AQVQHLRERLDDLPE--AAG--VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
Q+ L+E+L +PE A G + V TIDSFQG+E D V ISM RSN +GFL D RR
Sbjct: 527 QQIHILKEQLLSVPELQAYGDRISVNTIDSFQGQERDIVYISMTRSNNDNKIGFLSDIRR 586
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLA 655
MNVA+TRA K + ++ DS+T+ F A
Sbjct: 587 MNVAMTRARKKLVIIGDSATLSQLPFYA 614
>gi|225851051|ref|YP_002731285.1| DNA helicase [Persephonella marina EX-H1]
gi|225645408|gb|ACO03594.1| putative DNA helicase [Persephonella marina EX-H1]
Length = 653
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 205/716 (28%), Positives = 317/716 (44%), Gaps = 148/716 (20%)
Query: 15 EFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICN 74
E+ L+ +ER+AE +F LN E L G+ Q+ I
Sbjct: 10 EYVTYWENLVELEREAEKDF---HLN---------------EILSLSGKERQKKGRAILG 51
Query: 75 LFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNL 134
L +G + F E +P ++ GD+V V SR I+G V
Sbjct: 52 LQGRYIGEIIGDFQVYRFFKED---MPDHQINVGDVVLV----SRKHPLRDGIEGTVFEK 104
Query: 135 GEDGCTISVALESRHGDPTFSKLF--GKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
G+ T+ FS++ GK RID + +T++R L + +K
Sbjct: 105 GKHFITV-----------VFSQILPSGKKWRIDL---FVNDITFKRMSGTLHMFEKGY-- 148
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
S T+ GD T EE E++ ++ + Q++A+ + +
Sbjct: 149 ----SFFPEDTVLGDN-GYTVCEE-------EIQF---FNESLNQFQREAVKKAVCSDK- 192
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
L +I GPPGTGKT L E+I + V +G+RVL TA +N AVDN+VE L + G+N+VR+G+P
Sbjct: 193 LFMIHGPPGTGKTTTLLEVIIQHVSKGDRVLATADSNTAVDNIVEGLVERGVNVVRIGHP 252
Query: 313 ARISPAVASKSLGEIVKS---------------KLASFVAEFERKKSDLRKDLR------ 351
AR+ + SL + +S KL S +++ + R+ L
Sbjct: 253 ARLKKELLDVSLDAVAESHPDYNEVRSIEKKIKKLKSLQESYKKPTAQRRRGLSYSDILK 312
Query: 352 -------------QCLKDDSLAAGIR--QLLKQLGKTLKKKEKETVKEVLSSAQVVLATN 396
+ LK S+A IR + +K+L +K E + ++L+SA+V+ ATN
Sbjct: 313 YAKSGKKVRGHRIETLK--SMAEWIRLQKEIKKLSDRKRKIEDRIINDILNSAEVICATN 370
Query: 397 TGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALE 437
+ A + FD+V G + ++AGD QL P +L+ A +
Sbjct: 371 STAGSEFLSDY-VFDVVFIDEASQSTEPSCLIPVIKGLKVVMAGDHKQLPPTVLNPDAKD 429
Query: 438 GGIGVSLLERAATLH-EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV- 495
+ ++ ER ++ E K+ QYRMND I + S+E Y G LIS +V L
Sbjct: 430 --LSFTMFERFMKIYPENTYMLKI--QYRMNDIIKQFPSEEFYDGQLISDESVKDRKLSD 485
Query: 496 ------DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVH 549
D P T P++ +DT G G+ S YN EA+ V
Sbjct: 486 ITGKEGDAPITDDT-----PVVFIDTE--------GKFLEKQKKGSRSKYNPEEAKAVKS 532
Query: 550 HVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIIS 609
V L GV I V +PY +L++ + D VEV T+D FQGRE + ++IS
Sbjct: 533 IVEKLKEIGVLTEDIGVITPYKDHEDYLKKIIPD------VEVKTVDGFQGREKEVIVIS 586
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+VRSN +GFL D RR+NVA+TRA + V ++ DS T+ N +L++ I+ G
Sbjct: 587 LVRSNPEEEIGFLDDLRRLNVALTRAKRKVIIIGDSKTLSSNETYRKLIKFIKEKG 642
>gi|284038257|ref|YP_003388187.1| ATPase AAA [Spirosoma linguale DSM 74]
gi|283817550|gb|ADB39388.1| AAA ATPase [Spirosoma linguale DSM 74]
Length = 632
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/447 (34%), Positives = 230/447 (51%), Gaps = 62/447 (13%)
Query: 253 LLIIQGPPGTGKTG-LLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
L I+ GPPGTGKT L++ I A Q +++LV AP+N AVD + EKL D GL+++RVGN
Sbjct: 195 LAIVHGPPGTGKTTTLVQAIKALHKQDNKKLLVVAPSNTAVDLLSEKLHDEGLSVLRVGN 254
Query: 312 PARISPAVASKSLGEIVKS--------KLASFVAEFERKKSDLRKDLRQCLKDD--SLAA 361
PAR+S + + +L V KL EF+ +++ + +D +L
Sbjct: 255 PARVSERLMALTLDHKVADHPAMKEARKLKKQANEFKNMAHKYKRNFGKAERDQRKALFD 314
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------- 413
+++K++G T E+ + +++ AQV+ AT GA +R L +V
Sbjct: 315 EAHRIMKEVGNT----EQYVIDDLVGKAQVITATLVGANHYTVRNLTYHTVVIDEAGQAL 370
Query: 414 ----------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQ 463
++ +LAGD CQL+P I S +A G+ +LLE+ LH ++ L Q
Sbjct: 371 EPACWIPILKAQKVVLAGDHCQLSPTIKSAEAARKGLSHTLLEKCIKLHPEAVSL-LDEQ 429
Query: 464 YRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
YRM++ I ++S+ Y L + +VA H L D + L+ +DT
Sbjct: 430 YRMHEHIMGYSSQVFYKNKLKAHGSVARHSLFD---------SDTALVFVDT------AG 474
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC------AGVSPSAIAVQSPYVAQVQHL 577
G +E LD GT S N EA +++ H+ L+ + IA+ SPY Q+ L
Sbjct: 475 CGFDEKLD--GTSS-TNPEEAALLMKHLTQLVTDLSTRYTKENFPTIAIISPYKQQINVL 531
Query: 578 RERLDDLPE----AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAIT 633
+++L PE + + V TIDSFQG+E D V ISM RSN G +GFL D RRMNVA+T
Sbjct: 532 KDQLLHTPELQPYSDRISVNTIDSFQGQERDIVYISMTRSNAEGEIGFLSDIRRMNVAMT 591
Query: 634 RACKHVAVVCDSSTICHNTFLARLLRH 660
RA K + +V DS+T+ F A + +
Sbjct: 592 RARKKLVIVGDSATLAGLPFYADFIAY 618
>gi|302652772|ref|XP_003018229.1| hypothetical protein TRV_07762 [Trichophyton verrucosum HKI 0517]
gi|291181848|gb|EFE37584.1| hypothetical protein TRV_07762 [Trichophyton verrucosum HKI 0517]
Length = 1112
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/455 (34%), Positives = 234/455 (51%), Gaps = 61/455 (13%)
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
M + +DSQK+AI L R + +I GPPGTGKT L E+I + VQ+ +RVLV P+N
Sbjct: 648 FMDASLNDSQKEAIRFAL-ASREIALIHGPPGTGKTHTLIELIRQLVQRKKRVLVCGPSN 706
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD 349
+VDN+VE+L+ + +VR+G+PAR+ +V SL + ++ A+ + + RK+ D ++
Sbjct: 707 ISVDNIVERLALHKVPLVRIGHPARLLSSVLDHSLEVLSQTSEAAAIVKDVRKEIDSKQA 766
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
+ ++ I LK+L K +++E + V ++S +QVVL T GA ++
Sbjct: 767 SIRKTRNGRERRAIYGDLKELRKEFRERESKCVDNIVSGSQVVLGTLHGAGGHQLKN-QK 825
Query: 410 FDLV-------------------GKRCILAGDQCQLAPVI-------------------- 430
FD+V R +LAGD QL P I
Sbjct: 826 FDVVLIDEASQAREAQCWIPLLPASRVVLAGDHLQLPPTIKSKSSSKSDQTNSALWDKED 885
Query: 431 -----LSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLIS 485
LS + ++L +R +LH + LTTQYRM+ I + S E+Y LI+
Sbjct: 886 LHFNELSNTFDMRNLEITLFDRLLSLHGTGIKRVLTTQYRMHQKIMDFPSDELYESKLIA 945
Query: 486 SSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNE 541
+ V LL D P+ V+ T T+ PL+ DT+ P S L S N+
Sbjct: 946 ADAVRERLLKDLPYEVEDTDDTREPLVFYDTQGGDFPEKSPDSNGISAKSLL-VESKCND 1004
Query: 542 GEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVATIDS 597
EA +V HV +L+ AGV P IAV +PY AQV Q L+E+L L E+ ++D
Sbjct: 1005 MEAAVVARHVENLVSAGVRPEDIAVITPYNAQVALLSQLLKEKLPTL------ELGSVDG 1058
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
FQGRE +AV++S+VRSN+ VGFLG+ RR+N I
Sbjct: 1059 FQGREKEAVVVSLVRSNSDHEVGFLGEKRRLNEDI 1093
>gi|324508684|gb|ADY43663.1| DNA-binding protein SMUBP-2, partial [Ascaris suum]
Length = 680
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 236/464 (50%), Gaps = 48/464 (10%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+ +D Q++A+A LN+ RP++ IQGPPGTGKT ++ EII +A++ ++VLV AP+N A+
Sbjct: 229 QKLNDDQQRAVAAALNRSRPIVTIQGPPGTGKTAVVIEIILQAIRTKQKVLVCAPSNLAI 288
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
+N++ + +R A S S+ E +K + ++ R L + +R
Sbjct: 289 ENIIGR--------IRGETEASRMSLDPSISMEEDLKQH--NSYSDLLRLYEQLNESIR- 337
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD- 411
D S+ I Q +L +++K V+ QV+L T + + +R L F
Sbjct: 338 LTGDSSITRKISQEATRLRDSMRKS-------VVVEKQVILCTVSSGSLHTLRGLGFFPD 390
Query: 412 -------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
L RC+LAGD CQL V+ S +A+ G+G SL+E
Sbjct: 391 VVIVDEAAQAMECATWVPLLQAPRCVLAGDHCQLPTVLHSSEAISQGLGTSLMETLDKEF 450
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
V+ L+ Q+RMN+ I W++ Y L + +VA L D + + + PLL+
Sbjct: 451 GSVVKHFLSVQHRMNEKIMRWSADYFYESKLQAHRSVAGISLSDISAIDGSDLMNEPLLM 510
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
+DT S G ++ S+ N GEAEIV +V L+ GV + V SPY A
Sbjct: 511 IDTH--SVSRQRGLSVSVERIHQQSYRNHGEAEIVCAYVQFLMRKGVRQCDVGVISPYFA 568
Query: 573 QVQHLRERLDDLPEAAGVEVA-TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
QV+ LR+ L G E+ T+D FQG++ + +++S+VR+N G +GFL D+RR+NVA
Sbjct: 569 QVELLRKTL-------GEEIVNTVDGFQGQQREVIVMSLVRNNYEGRIGFLSDARRLNVA 621
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSF 675
+TRA + +V SS + H L LL IR G+V + +F
Sbjct: 622 VTRARRQFLLVGSSSMMRHAEHLRSLLECIRTVGKVLRPDQLTF 665
>gi|387790987|ref|YP_006256052.1| ATPase [Solitalea canadensis DSM 3403]
gi|379653820|gb|AFD06876.1| Putative ATPase (DUF699) [Solitalea canadensis DSM 3403]
Length = 642
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 242/485 (49%), Gaps = 63/485 (12%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+ + SQ A+ LN + I+ GPPGTGKT E I + + ++VLVTAP+N AV
Sbjct: 181 QQLNTSQNSAVHNILNAN-DVAIVHGPPGTGKTTTFVEAIKQVTLKEKQVLVTAPSNTAV 239
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLR---- 347
D + E+LS GLN+VR+G+PAR+ +A + +I + + + + +K + R
Sbjct: 240 DLLCERLSAQGLNVVRIGHPARVGDHLADLVIDNKISQHEYFNDIKSIRKKAEEFRNMAF 299
Query: 348 KDLRQCLKDDSLAAGIRQLLKQLGKTLKKK----EKETVKEVLSSAQVVLATNTGAADPL 403
K R K++S RQLL ++LK++ E V ++LS AQV+ T G+ + +
Sbjct: 300 KYKRNFGKEESRQ---RQLLFNEARSLKQEAIKLEDYIVSDILSEAQVIACTLVGSNNSV 356
Query: 404 IRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
+R F V +R I+AGD CQL P + S +A + G+ V+L
Sbjct: 357 LRD-RQFKTVFIDEAAQALEPACWIPIMKAQRVIMAGDHCQLPPTVKSYEAGKQGLNVTL 415
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
E+ + + T L QYRMN AI +++++ Y G L + TVA+ LV
Sbjct: 416 FEK--VIERQKVDTLLEVQYRMNKAIMEFSNQQFYRGKLTAFETVANRKLVKED------ 467
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA- 563
+ PLL +DT GC + S N E ++++++ + +
Sbjct: 468 --ENPLLFIDT--------AGCGFNERTENGRSASNPEEGNLLMNYLNDYLQQLTNYDNE 517
Query: 564 -------IAVQSPYVAQVQHLRERLDDLPEAAG----VEVATIDSFQGREADAVIISMVR 612
+ V SPY AQV L E+L++ A + T+D FQG+E D + IS+VR
Sbjct: 518 VMDKIRRVGVISPYKAQVSFLTEQLENFETLASLGKKISFNTVDGFQGQECDLIAISLVR 577
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEP 672
SN +GFL D+RRMNVAITRA K + ++ DS+T+ + F A L H++ + A
Sbjct: 578 SNEKNEIGFLADTRRMNVAITRAKKKLLIIGDSATLSSHPFYASFLDHVQNNSAYQSAWE 637
Query: 673 GSFGG 677
S+ G
Sbjct: 638 LSYLG 642
>gi|255533226|ref|YP_003093598.1| DEAD/DEAH box helicase [Pedobacter heparinus DSM 2366]
gi|255346210|gb|ACU05536.1| DEAD-like helicase [Pedobacter heparinus DSM 2366]
Length = 636
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 157/455 (34%), Positives = 228/455 (50%), Gaps = 74/455 (16%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
+ L I+ GPPGTGKT L + + ++Q G ++LV AP+N AVD + EKL+D GLN++R+
Sbjct: 194 QQLAIVHGPPGTGKTTTLVQAVKTMIKQHGRQILVVAPSNTAVDLLSEKLADEGLNVLRI 253
Query: 310 GNPARISPAV----------ASKSLGEI--VKSKLASF---VAEFERKKSDLRKDLRQCL 354
GNP R+S + A S+ E+ +K + A + +++R K+ R+ L
Sbjct: 254 GNPVRVSEKLFSLTLDSKMSAHASIKEVKDLKKQAAEYKKMAHKYKRNFGRAEKEQRKAL 313
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDT--F 410
D++ +L K + E+ +++++ AQVV AT GA I R+ DT
Sbjct: 314 FDEA---------HKLMKAVAGAEQYIIEDLIGKAQVVTATLVGANHYTIKDRKFDTVVI 364
Query: 411 DLVGK--------------RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
D G+ + ILAGD CQL P I S A + G+ +LLE+ LH +
Sbjct: 365 DEAGQALEPACWIPILKAQKVILAGDHCQLPPTIKSNDAAKAGLSTTLLEKCIALHPNAV 424
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR 516
L QYRM+ I +++SK Y G L + + VA HLL + L +DT
Sbjct: 425 VL-LEEQYRMHTQIMAYSSKVFYEGKLKAHAAVAGHLL---------FPGDTALNFIDTA 474
Query: 517 LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI-------CAGVSPSAIAVQSP 569
GC GT S YN EA ++ H+ L+ A PS I V SP
Sbjct: 475 --------GCGFEEQREGT-SIYNSEEAVFLLKHLTQLVLKLAEVYVAENFPS-IGVISP 524
Query: 570 YVAQVQHLRERLDDLP----EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Y Q+ L++ L + P + V TIDSFQG+E D V I M RSN G +GFL D
Sbjct: 525 YKQQIYILKDLLLNHPVLQLYIEKISVNTIDSFQGQERDIVYIGMTRSNNEGVIGFLSDI 584
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
RRMNVA+TRA K + V+ DS+T+ F + + +
Sbjct: 585 RRMNVAMTRARKKLVVIGDSATLSRLPFYSDFIAY 619
>gi|375146785|ref|YP_005009226.1| ATPase AAA [Niastella koreensis GR20-10]
gi|361060831|gb|AEV99822.1| ATPase AAA [Niastella koreensis GR20-10]
Length = 633
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 155/465 (33%), Positives = 239/465 (51%), Gaps = 70/465 (15%)
Query: 237 DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNM 295
+S ++A + + L I+ GPPGTGKT L + I +++ +++LV AP+N AVD +
Sbjct: 179 NSSQQAAVNKILQANDLAIVHGPPGTGKTTTLVQAIKAMIKKDNQQILVVAPSNTAVDLL 238
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLG----------EI--VKSKLASFVAEFERKK 343
EKLSD GLN++RVGNPAR+S + S +L EI +K + ++F+ + K
Sbjct: 239 SEKLSDEGLNVLRVGNPARVSERLLSLTLDYKMADHPHTKEIKRLKKQASAFMDMAHKYK 298
Query: 344 SDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPL 403
K R K +L A R ++K++ + E+ +K++++ AQV+ AT G+
Sbjct: 299 RHFGKAERDQRK--ALFAEARNIMKEVDNS----EQYIIKDLVAKAQVITATLLGSNHYT 352
Query: 404 IRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
+R L F+ V ++ +LAGD CQL P + S +A + G+ +L
Sbjct: 353 VRNL-KFNTVVIDEAGQALEPACWVPILKAQKVVLAGDHCQLPPTVKSAEAAQNGLATTL 411
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
LE+ LH L QYRM++ I ++S Y L + ++VA H+L +
Sbjct: 412 LEKCVALHPEA-EVLLEEQYRMHEMIMGYSSSTFYDDRLKAHASVARHVL---------F 461
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS---- 560
PL+ +DT G +E + T YN EA + H+ L+ + S
Sbjct: 462 SNDNPLVFVDT------AGCGFDEKTEQTST---YNPEEAAFLFRHLTQLVSSLDSHYKP 512
Query: 561 ---PSAIAVQSPYVAQVQHLRERLDDLP--EAAGVEVA--TIDSFQGREADAVIISMVRS 613
PS IA+ SPY Q+ L+++ P +A G ++A TIDSFQG+E D V ISM RS
Sbjct: 513 ENFPS-IAIISPYKQQIDTLKQQFLSSPALQAYGHKIAINTIDSFQGQERDIVYISMTRS 571
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
N +GFL D RRMNVA+TRA K + V+ DS+T+ F +
Sbjct: 572 NPDNRIGFLSDIRRMNVAMTRARKKLVVIGDSATLSQFDFYNNFI 616
>gi|315231815|ref|YP_004072251.1| ATP-dependent helicase-like protein [Thermococcus barophilus MP]
gi|315184843|gb|ADT85028.1| ATP-dependent helicase-like protein [Thermococcus barophilus MP]
Length = 652
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 209/715 (29%), Positives = 335/715 (46%), Gaps = 139/715 (19%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+ + EL+ +ER+AE+E +EE+ + + GRA L I
Sbjct: 6 YINHLKELVELEREAEIEAMREEMRKLTGYEREK-----------VGRAVLGLNGKIIGE 54
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
G LV + G + T +S GD+V + SRG S + G V G
Sbjct: 55 EF--------GYKLVKY---GRKQEIKTEISVGDLVVI----SRGNPLASDLIGTVTEKG 99
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
+ + VALE+ P+++ ++VRID A+ +T++R E L L K+G
Sbjct: 100 KR--FLVVALET---VPSWAL---RNVRIDL---YANDVTFKRQMENLERLSKSG----K 144
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
++ + L KE V EV+ K ++SQ+KA++ L + +
Sbjct: 145 QALRFALGLEKPKESV------------EVEFKP-FDKQLNESQRKAVSFALGGE-DFFL 190
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARI 315
I GP GTGKT L E+I + V++G++VL TA +N AVDN+VE+L + +VR+G+P+R+
Sbjct: 191 IHGPFGTGKTRTLAEVILQEVKRGKKVLATAESNVAVDNLVERLWG-KVKLVRLGHPSRV 249
Query: 316 SPAVASKSLGEIVKS---------------KLASFVAEFERKKSDLRKDL--RQCLKDDS 358
S + +L V++ +LA + + R+ L RQ L+
Sbjct: 250 SKHLKESTLAYQVETHEKFRRVKELRSKAERLAMLRDQCTKPTPQWRRGLTDRQILRLAE 309
Query: 359 LAAGIRQLLKQLGKTL-----------------KKKEKETVKEVLSSAQVVLATNTGAAD 401
G R + ++ K++ KK E+E ++EV+S A VVL+TN+ AA
Sbjct: 310 RGIGARGIPARVVKSMAQWIAFNEKVQKLYDEAKKLEEEIIREVISKADVVLSTNSSAAL 369
Query: 402 PLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGV 442
I+ ++ FD+ K+ ILAGD QL P ILS +A E +
Sbjct: 370 DFIKDIN-FDVAVVDEASQATIPSVLIPIAKAKKFILAGDHKQLPPTILSEEAKE--LSE 426
Query: 443 SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT----- 497
+L E+ L+ A L QYRMN+ + + S+E Y G + + V + L+D
Sbjct: 427 TLFEKLIKLYPSK-AKMLEIQYRMNERLMEFPSREFYNGRIKAYDGVKNITLLDLGIRVF 485
Query: 498 PFVKPTWIT----QCPLLLLDT-RLPYGSLSLGCEEHLDLAGTGSFYNEG--EAEIVVHH 550
F +P W + + PL+ +DT + P E + GS E EA++V
Sbjct: 486 HFGEP-WDSILNPKEPLVFVDTSKHP---------EKWERQRKGSLSRENPLEAKLVKEI 535
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
V L+ G+ P +I V +PY Q R+ + L E +EV T+D +QGRE + +I+S
Sbjct: 536 VKRLLRMGIRPESIGVITPYDDQ----RDLISSLIENDEIEVKTVDGYQGREKEVIILSF 591
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
VRSN G +GFL D RR+NV++TRA + + + DS T+ + R + ++ G
Sbjct: 592 VRSNKKGELGFLTDLRRLNVSLTRAKRKLIAIGDSETLGAHPTYKRFVEFVKKKG 646
>gi|254565491|ref|XP_002489856.1| Hexameric DNA polymerase alpha-associated DNA helicase A involved
in lagging strand DNA synthesis [Komagataella pastoris
GS115]
gi|238029652|emb|CAY67575.1| Hexameric DNA polymerase alpha-associated DNA helicase A involved
in lagging strand DNA synthesis [Komagataella pastoris
GS115]
gi|328350271|emb|CCA36671.1| hypothetical protein PP7435_Chr1-0519 [Komagataella pastoris CBS
7435]
Length = 726
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 173/558 (31%), Positives = 281/558 (50%), Gaps = 95/558 (17%)
Query: 170 LADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSE---VK 226
L++T+TY+R + L L + + S ++ L +E +DL E +
Sbjct: 182 LSNTITYKRMAQGLTRLSEVN----SDSAPELIRLLLGEEQFKAPTSSDLVSKMENLTFE 237
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ----QGERV 282
DG+ +DSQ++AI L + P+ II GPPGTGKT L E++ + V+ +R+
Sbjct: 238 NDGL-----NDSQREAINFAL--QSPITIIHGPPGTGKTSTLVELVRQLVKARGSSSKRI 290
Query: 283 LVTAPTNAAVDNMVEKLSDVGLN-------IVRVGNPARISPAVASKSLGEIVKSKLASF 335
L+ P+N +VD ++E+L D+ N ++RVG+PAR+ ++ + SL +++ ++
Sbjct: 291 LICGPSNISVDTILERLDDLYPNKADSMSKLIRVGHPARLLSSILNHSLELLIQGSESNE 350
Query: 336 VAEFERKKSDLRKDLRQCLKDDSLAAGIRQL------LKQLGKTLKKKEKETVKEVLSSA 389
+ + D+ K+++ +K R+ +K L K L+++ ++ E++ S+
Sbjct: 351 ILK------DIIKEIQDLMKKSKKMKSYRERKDCYLDVKNLRKDLRERARKITSELIRSS 404
Query: 390 QVVLATNTGAA-----DPLIRR----LDTF--DLVGK-----------------RCILAG 421
QVV++T GA+ D + DT D V + + I+AG
Sbjct: 405 QVVVSTLHGASSRELFDAALNSQEGLFDTLIIDEVSQSLEPQCWIPLMAHTGINKLIIAG 464
Query: 422 DQCQLAPVILSRKALEGG---------IGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
D QL+P I K L G + +L +R ++H L QYRMN+ I
Sbjct: 465 DNKQLSPTI---KTLPEGKQKSKVVDILSTTLFDRLVSIHGQSFVKFLNIQYRMNEKIMR 521
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCE--EH 529
+ S E+YG LI+ +VA+ +D P+ V+ T T PL+ DT+ G E E
Sbjct: 522 FPSNELYGAKLIAHKSVANKTCLDLPYRVEETDDTIEPLIWYDTQ--------GDEFPEQ 573
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL----DDLP 585
GS YNE EA +V HV L+ AGV + I + SPY AQV L+E L D L
Sbjct: 574 ETEEDQGSKYNENEALLVAKHVRILLKAGVLQTDIGIISPYNAQVSFLKELLINGDDQLT 633
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
E +E++T+D FQGRE + +I+++VRSN VGFL D RR+NV++TRA K + V+ D
Sbjct: 634 E---LEISTVDGFQGREKEIIILTLVRSNREKEVGFLKDFRRLNVSMTRAKKQLCVIGDM 690
Query: 646 STICHNTFLARLLRHIRY 663
T+ N L + +++
Sbjct: 691 ETLGENETTKFLSKWVKW 708
>gi|50309513|ref|XP_454766.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643901|emb|CAG99853.1| KLLA0E18085p [Kluyveromyces lactis]
Length = 681
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 152/495 (30%), Positives = 248/495 (50%), Gaps = 68/495 (13%)
Query: 230 IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289
+ ++SQ+ AI L+ + + II GPPGTGKT L E+I + +GER+LV P+N
Sbjct: 197 FYNEQLNESQRDAIQHSLSNE--ISIIHGPPGTGKTYTLVELIKQLYDRGERILVCGPSN 254
Query: 290 AAVDNMVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLR 347
+VD ++E+LS V G ++R+G+P+R+ P V S SL + K + + + D+
Sbjct: 255 ISVDTILERLSKVVPGDELLRIGHPSRLLPQVLSHSLDVLSKKGDSGMILK------DIM 308
Query: 348 KDLRQCLKDDSLAAGIR-----------QLLKQLGKTLKKKEKETVKEVLSSAQVVLATN 396
K++ DD++A+ + Q +K L K L+++EK + ++ +++V+ T
Sbjct: 309 KEI-----DDTIASVKKLKSSRDRKKGWQEVKALRKELRQREKSGLINIILKSKIVVCTL 363
Query: 397 TGAADPLIRRLDTFDLVGK-------------------------------RCILAGDQCQ 425
G++ + L +DL K R I+AGD Q
Sbjct: 364 HGSSSREL--LSAYDLQSKLFNTLIIDEVSQSLEPQCWIPLISHLKSDMQRLIIAGDDKQ 421
Query: 426 LAPVILSRK--ALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL 483
L P I + ++ + ++ +R + L QYRMN+ I ++S E+Y G L
Sbjct: 422 LPPTIKTEDNDKVKRLLSTTVFDRLLQHYGNEFKYLLNVQYRMNEEIMQFSSNELYDGKL 481
Query: 484 ISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYN 540
+ +VA LL D P V+ T P + LDT P S + S YN
Sbjct: 482 KADDSVAKQLLADLPGVESNDNTTFPCIWLDTEGDDFPERSDENDNDADDKFHLVSSKYN 541
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQG 600
E EA + ++HV LI AGV+ +I V SPY +QV L++ + + +A +E++T+D FQG
Sbjct: 542 ENEAYLALYHVEQLIKAGVTEESIGVISPYNSQVSLLKKLIHEKHQA--IEISTVDGFQG 599
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFLARLL 658
RE + +I+S+VRSN VGFL D RR+NVA+TR + + V+ + + C FL R +
Sbjct: 600 REKECIILSLVRSNENFEVGFLKDERRLNVAMTRPKRQLCVIGNMEMLSRCRVPFLNRWV 659
Query: 659 RHIRYFGRVKHAEPG 673
+ V + +P
Sbjct: 660 LWVESGFEVIYPDPS 674
>gi|319789787|ref|YP_004151420.1| DNA helicase [Thermovibrio ammonificans HB-1]
gi|317114289|gb|ADU96779.1| DNA helicase [Thermovibrio ammonificans HB-1]
Length = 720
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 187/665 (28%), Positives = 314/665 (47%), Gaps = 98/665 (14%)
Query: 62 GRAPQELCDTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGA 121
GR + L I +L T +HLV F E + T ++ GD+V V S+G
Sbjct: 98 GRERELLGRAILDLKGTKAGTKFH-LHLVRFWRE---KPIETEITTGDIVLV----SKGN 149
Query: 122 CATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCE 181
S + G V + E T++VA ++R P + ++ + VRID E N E
Sbjct: 150 PLKSDLLGTVVRITEK--TVTVAFDNR--PPNW--VYKRGVRIDLYVNDVTFKRMEENLE 203
Query: 182 ALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKK 241
L RN T+ G +E ++E+ + + + +++Q+
Sbjct: 204 ELRHASGRQRELRN-------TVIGLREP---------EHFTEIPFEPVDSR-LNETQRL 246
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301
A++ L +I GPPGTGKT + E+I + V++GE+V+ TA +N A DN++ LS
Sbjct: 247 AVSRALGSP-DFFLIHGPPGTGKTSTITELIVQLVKRGEKVIATADSNIAADNILLNLSK 305
Query: 302 V-GLNIVRVGNPARISPAVASKSLGEIVKSK-LASFVAE-FERKKSDLRK---------D 349
L +VR+G+PAR+ + S+ + + A V E +ER K + K
Sbjct: 306 YPDLKLVRIGHPARVLEELERFSIYALFEEHPKAQKVKEGWERVKELIEKRDQFTKPVPQ 365
Query: 350 LRQCLKDDSLAA---------GI-RQLLKQLG-------------KTLKKKEKETVKEVL 386
LR+ + DD + G+ ++L++ + K LK+ E +E++
Sbjct: 366 LRRGMSDDEIVYFGKKGKSFRGVPKKLMRSMAEWILANYEIDVRIKALKEMETHIFREII 425
Query: 387 SSAQVVLATNTGAADPLI--------------RRLDTFDLV----GKRCILAGDQCQLAP 428
+ A VV++TN+ L+ ++++ L+ R +AGD QL P
Sbjct: 426 ADADVVISTNSMVKSELLEGFHFDSAVIDEGSQQVEPSTLIPIARANRFFIAGDHKQLPP 485
Query: 429 VILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSST 488
+ S +A E + +L ER + H G L++ L QYRMN+ I + ++E Y G L+++
Sbjct: 486 TVASEEAKE--LERTLFERLISTH-GELSSMLRVQYRMNEKIMEFPNREFYEGKLVAAPE 542
Query: 489 VASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL---SLGCEEHLDLAGTGSFYNEGEAE 545
V L D P + LD +P G + S+ E G+ S+ N EA+
Sbjct: 543 VKERTLADFNLEAPRKFKKV----LDPSVPLGFIDTSSINAYE-FQPEGSTSYENYEEAK 597
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
I V L G+ I + +PY AQV+ +++ L + VEV ++D FQGRE +A
Sbjct: 598 IAVEVALELHRMGLDRREIGIITPYAAQVKLIKQLLAE--REFKVEVNSVDGFQGREKEA 655
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+I+S VRSN G +GFL D RR+NVAITR + + + ++ T+ ++ +R + H++ G
Sbjct: 656 IIVSFVRSNDEGEIGFLKDLRRLNVAITRPRRKLVAIGNTKTLSSHSTYSRFIEHVKREG 715
Query: 666 RVKHA 670
++ A
Sbjct: 716 ELERA 720
>gi|170095291|ref|XP_001878866.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646170|gb|EDR10416.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 721
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 228/776 (29%), Positives = 344/776 (44%), Gaps = 172/776 (22%)
Query: 8 TIQSRLDEFTQRMSELLRIERDAELEFTQEEL-NAVPTPDENSDSSKPIEFLVSHGRAPQ 66
T +++L F R LL ERDAE+E + L N P + L G
Sbjct: 2 TTEAQLTAFIARQRTLLAKERDAEVERSSLLLSNCGP------------KLLEQKGL--- 46
Query: 67 ELCDTICNLFVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLSPGDMVCVRVCDSRGAC 122
++ L V S + GLGG LV L R H PP T+ PGD+ + S G
Sbjct: 47 ----SLGGLGVSSINIGLGGKTLVELERPSAYHSSPLFPPHTIRPGDLARIEANVSSGGA 102
Query: 123 A------------TSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRID----- 165
++ ++G V+ + + I+V +P+ S S +D
Sbjct: 103 TKKAKKPTSTDTKSTQVEGVVYKVSDTRIVIAV-------EPSDSA----SEDLDLPERC 151
Query: 166 RIQGLADTLTYERNCEALMLLQKN---GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADW 222
R+ LA+++TY+R +A+ ++K + + + S AAV L +T
Sbjct: 152 RVVKLANSVTYDRMDKAIDHIEKTVIPSVCRGDASKAAVNPLIQVLLGIT-------PPS 204
Query: 223 SEVKLDGIM--GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG- 279
+ LD I+ + ++SQK+A+ L + I GPPGTGKT L EII + +
Sbjct: 205 RRIPLDNIVFFDEHLNESQKEAVKFCLESPE-VACIHGPPGTGKTHTLIEIIRQLTAESP 263
Query: 280 -----ERVLVTAPTNAAVDNMVEKL-------SDVGLNIVRVGNPARISPAVASKSLGEI 327
+R+LV +N +VDN++E+L + + R+G+PAR+ I
Sbjct: 264 TNPKPKRLLVCGASNLSVDNILERLLALPADGKSEKVKVTRIGHPARVMTHEG------I 317
Query: 328 VKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGI---------------------RQL 366
++S L V +++ L KD++ L+ A G+ +
Sbjct: 318 IESTLE--VKATRTEQAALAKDVKNELET---ALGVLSGKGKSVKGKGPRGAERKKMWEE 372
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
+K L K +++E VK VL +Q+VLAT + +R D FD+V
Sbjct: 373 VKALRKEYRQREGGVVKSVLGESQIVLATCHSSGGRQLRYHD-FDVVIIDEATQALEAVC 431
Query: 414 ------GKRCILAGDQCQLAPVILS-------------------RKALE----GGIGVSL 444
K+ ILAGD QL P ILS K +E + +L
Sbjct: 432 WIPIFKAKKLILAGDPMQLPPTILSIGNNKKAKAKAGKSASIATNKRIELMPPRTLETTL 491
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
+R ++ + L QYRM+ I ++ SK +YG L S S+VA+ LL D P
Sbjct: 492 FDRLEKMYGPSIKRMLKVQYRMHAQICAFPSKTLYGSKLQSHSSVAARLLQDLPNTHADS 551
Query: 505 ------ITQCPLLLLDTRLPYGSLSLGCE--EHLDLAG-TGSFYNEGEAEIVVHHVFSLI 555
+ Q P++ DT GCE E LD G GS NE E IV + V L+
Sbjct: 552 EEDVKDMLQTPVVFFDT--------AGCEYFERLDGDGDEGSRCNENEVTIVKNWVEKLV 603
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
G+ P IA+ +PY AQV L L +E+ T+D QGRE + +IIS+VRSN
Sbjct: 604 EVGIQPKQIAIITPYQAQVTLLTSTLRPT-YGPDLEIGTVDGMQGREKEVIIISLVRSND 662
Query: 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH-NTFLARLLRHIRYFGRVKHA 670
VGFL + RRMNVA+TRA +H+ +V DSST+CH ++L + L + VK+A
Sbjct: 663 TREVGFLKEKRRMNVAMTRAKRHLCIVGDSSTVCHGGSYLKKWLAWLDTNADVKYA 718
>gi|398347439|ref|ZP_10532142.1| DNA and RNA helicase [Leptospira broomii str. 5399]
Length = 627
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 155/466 (33%), Positives = 242/466 (51%), Gaps = 48/466 (10%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+DSQ++AI+ L + L+++ GPPGTGKT + E I V +G++VLV+APTNAA D
Sbjct: 175 LNDSQRRAISAILQTE-DLILLHGPPGTGKTKTITEAIRILVDRGKKVLVSAPTNAATDL 233
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+ E L +G++ +R+G+PAR+S +V S SL + ++ F ER K ++ + L++
Sbjct: 234 LAESLGRMGVSALRIGHPARMSESVLSVSLDANL-NRHPDFKL-IERDKREIGELLKKAG 291
Query: 355 K--------DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR 406
K + + Q K+L K +K+++K V+ +L S V++ T+TGA+ L+ +
Sbjct: 292 KYKRTFGREEAEERRRLYQEAKELRKGIKERQKVLVRYLLESHPVIVCTHTGASSSLLDK 351
Query: 407 LDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
L+ FD L +R ++AGD QL P +LS L + + L+ER
Sbjct: 352 LN-FDYAVLDEGSQATEPASWIPILRAERIVIAGDPRQLPPTVLSEDPL---LKIPLMER 407
Query: 448 AATLHEGV-LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWIT 506
V L TQYRM D I S+ ++ Y G L+S + PF T +
Sbjct: 408 LLDRMNSVGRVYLLDTQYRMTDPIQSFPNRRFYAGRLVSG--IPEEERSTNPFPSETPLF 465
Query: 507 QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAV 566
+ +DT S + EE D S N EAE + + ++ +G SP + +
Sbjct: 466 DSSFVFIDT-----SGTDSGEELFD----ASLGNRWEAEFTITILKRILESGWSPEDLVL 516
Query: 567 QSPYVAQVQHLRERL-DDLP-EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
SPY Q L E L +LP + +E+ T+DSFQGRE VI S+VRSN+ G +GFL +
Sbjct: 517 ISPYRYQRFLLEEILRKELPIDVEKIEIETVDSFQGREKKGVIFSLVRSNSEGNIGFLSE 576
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
RR NV +TRA + + ++ D ST+ F L++ G V+ A
Sbjct: 577 ERRWNVGMTRAKRLLVLIGDGSTLGEQEFFQDLIQEAESCGEVRTA 622
>gi|338210831|ref|YP_004654880.1| type III restriction protein res subunit [Runella slithyformis DSM
19594]
gi|336304646|gb|AEI47748.1| type III restriction protein res subunit [Runella slithyformis DSM
19594]
Length = 636
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 155/469 (33%), Positives = 239/469 (50%), Gaps = 69/469 (14%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAV 292
+ + SQ+ A+ + + L ++ GPPGTGKT L + I V+ + ++VLV AP+N AV
Sbjct: 181 SLNPSQQSAVD-SILRANELAVVHGPPGTGKTTTLVQAIKALVKTENQKVLVVAPSNTAV 239
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLAS--FVAEFERKKSD----- 345
D + EKL + GLN++RVGNPAR++ + + +L SK+A ++ E +R K
Sbjct: 240 DLLSEKLHEEGLNVLRVGNPARVTERLTALTLD----SKMAEHPYMKEAKRLKKQAQELK 295
Query: 346 -----LRKDLRQCLKDDS--LAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
++ + +D L +++K++G T E+ + ++L AQVV AT G
Sbjct: 296 AMAHKYKRSFGKSERDQRKLLFVEAHRIMKEVGNT----EQYIIDDLLVKAQVVTATLVG 351
Query: 399 AADPLIRRLDTFDLV------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
+ +R + +V ++ ILAGD CQL+P I S A +GG+
Sbjct: 352 SNHYTVREVRYHTVVIDEAGQALEPACWIPVLKAQKVILAGDHCQLSPTIKSEVAAKGGL 411
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
+LLE+ H + T L QYRMN+ I ++S+ Y L + ++VA +L
Sbjct: 412 STTLLEKCVDAHPEAV-TLLEEQYRMNEQIMGYSSQIFYQHKLKAHASVAHRVL------ 464
Query: 501 KPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV-----FSLI 555
+ P+L +DT GC L GT S E A ++ H +
Sbjct: 465 ---FTDDKPVLFIDT--------AGCGFEEKLEGTSSTNPEEAALLLKHLGLLTAEWEAQ 513
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA----AGVEVATIDSFQGREADAVIISMV 611
S +IA+ +PY Q+ L E+L +PE A + V T+DSFQG+E D V ISM
Sbjct: 514 KTDTSFPSIAIIAPYKQQIHVLAEQLSHVPELQPYLAHMAVNTVDSFQGQERDVVYISMT 573
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
RSN+ G++GFL D RRMNVA+TRA K + VV DS+T+ F A + +
Sbjct: 574 RSNSEGSIGFLADIRRMNVAMTRARKKLVVVGDSATLAQFPFYADFISY 622
>gi|148643141|ref|YP_001273654.1| DNA2/NAM7 helicase family transcriptional regulator
[Methanobrevibacter smithii ATCC 35061]
gi|148552158|gb|ABQ87286.1| transcriptional regulator (enhancer-binding protein), DNA2/NAM7
helicase family [Methanobrevibacter smithii ATCC 35061]
Length = 658
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 206/719 (28%), Positives = 329/719 (45%), Gaps = 147/719 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEEL-NAVPTPDENSDSSKPIEFLVSHGRAPQELCDT 71
+ ++ +++ +L+ ERDAE+E E+ N P E S GRA ++
Sbjct: 1 MKKYIKQLIKLINYERDAEIELMTNEIKNLSPKKRE------------SLGRAINKV--- 45
Query: 72 ICNLFVVSTSTGLG---GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
LG G +V F G T +S GDMV + S G S +
Sbjct: 46 --------KGKYLGKQLGSQIVQF---GRSEKIETEISVGDMVLI----STGYPLRSDLT 90
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V G I VA E P ++ K VRID A+ +T+ R + L+ L
Sbjct: 91 GTVVEKG--ARFIKVAFEK--SIPKWA--LKKKVRIDL---YANDVTFRRMEDNLLHLNT 141
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
G + S L++ D + + K + K+ ++SQK A+ +N
Sbjct: 142 KGKNALEYS----------------LKKRDPKENKKEKYIDFIDKSLNESQKNAVRNAVN 185
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS-DVGLNIV 307
+ +I GP GTGKT L E+I + V+Q +VLVTA +N+AVDN++++LS + L I
Sbjct: 186 TEN-FFLIHGPFGTGKTRTLVELIQQEVRQNNKVLVTAESNSAVDNILDRLSQNKKLKIT 244
Query: 308 RVGNPARISPAVASKSL----------GEIVKS-KLASFVAEFERKKSDLRKDLRQCLKD 356
R+G+P R+S + SL G+I K+ K ++E + + R+ D
Sbjct: 245 RLGHPQRVSKENITYSLAYKAENHQLTGKINKNYKRIEQISETRDRFTKPTPQYRRGFSD 304
Query: 357 ---------------------DSLAAGI--RQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+S+A + + + ++ +KK E + VK++++S+ ++L
Sbjct: 305 SDILYNASKGKGGRGINSSKMESMANWLLENEKISEIHDKIKKLENKIVKDIINSSDIIL 364
Query: 394 ATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRK 434
+TN+ AA I R F++V +R ILAGD QL P I+S+K
Sbjct: 365 STNSTAAIEEIART-KFNVVIVDEASQATIPSILIPLSKARRFILAGDHKQLPPTIISKK 423
Query: 435 A--LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS- 491
A LE + L+++ A+ L QYRMN + + + E Y G+L S S+V
Sbjct: 424 AHFLEKTLFEELIKKYPNK-----ASLLNVQYRMNSFLMKFPNSEFYNGNLKSDSSVDDI 478
Query: 492 -----------HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540
L ++ K PLL +DT +L E+HL + S N
Sbjct: 479 NLDEIIDSEELSRLKESDVEKQLHNNLKPLLFIDT----SNLKNNEEKHL--KDSKSIIN 532
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQG 600
+ EA I + G++P I + SPY QV ++ D +P +EV ++D FQG
Sbjct: 533 QSEAAIATSIAKFYLGTGINPKDIGIISPYADQVNLIQ---DKIP----IEVKSVDGFQG 585
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
RE + +IIS VRSN G +GFL D RR+NVAITRA + + V+ + +T+ N+ ++L++
Sbjct: 586 REKEIIIISTVRSNKNGNIGFLKDLRRLNVAITRAKRKLIVIGNKNTLKGNSTYSKLIK 644
>gi|150020793|ref|YP_001306147.1| putative DNA helicase [Thermosipho melanesiensis BI429]
gi|149793314|gb|ABR30762.1| putative DNA helicase [Thermosipho melanesiensis BI429]
Length = 643
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 208/722 (28%), Positives = 337/722 (46%), Gaps = 139/722 (19%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEEL-NAVPTPDENSDSSKPIEFLVSHGRAPQELCDT 71
++E+ +++ +L+++ERD E++ Q E+ N EN GRA +L
Sbjct: 1 MEEYIKKLIQLVKLERDEEIKRMQWEMKNLTGKQRENK------------GRAILDLSPK 48
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFV 131
I + GM+LV F G + T + GD V + S+G S I+G V
Sbjct: 49 IIGEEL--------GMYLVKF---GRKKQIETEIGTGDEVII----SKGNPTKSDIKGVV 93
Query: 132 HNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGL 191
G+ +S+ S L K + RI A +TY+R + L
Sbjct: 94 TERGKRFIVVSL-----------SNLLPKDFKNVRIDLYASDITYKRQIDNL-------- 134
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
N + ++ V +N +++ + ++ QK AI+ L K
Sbjct: 135 --ENNDVKKILKYILSDPKVV---DNGTEEFTPI------DNNLNEYQKLAISKAL-KSE 182
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+I GP GTGKT L E I + ++G+++LVTA +N AVDN+VE+LS+ ++ VR+G+
Sbjct: 183 DFSLIHGPFGTGKTRTLAEYILQEAKKGKKILVTADSNLAVDNLVERLSE-SISHVRIGH 241
Query: 312 PARISPAVAS-------------KSLGEIVKS--KLASFVAEFERKKSDLRKDL--RQCL 354
P+RIS + S K + ++ K+ KL F++ ++ L +Q L
Sbjct: 242 PSRISSHLLSSSLMYKIQTHNKYKEIEKLKKTFEKLIQERESFQKPIPKWKRGLTDKQIL 301
Query: 355 K---DDSLAAGI-RQLLKQLGKTLKKKEK-ETVKE------------VLSSAQVVLATNT 397
K ++ GI +++K + K +K EK ET+KE +++++ VV TN+
Sbjct: 302 KLAENNKSQRGIPLKIIKDMAKWIKLNEKIETIKENIYKIEEEISKDIINNSMVVFTTNS 361
Query: 398 GAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEG 438
A +++ + FD+V GK+ +LAGD QL P ILS KA E
Sbjct: 362 SAYIDILKDYE-FDVVVVDEATQSTIPSVLIPLSKGKKFVLAGDHKQLPPTILSEKAKE- 419
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+ +L E + + L QYRMN+ + + +KE Y LIS V + L D
Sbjct: 420 -LSTTLFEMLIKKYPQK-SEILKIQYRMNERLMEFPNKEFYNNLLISG--VKNITLKDLN 475
Query: 499 FVKPTWITQCP--LLLLDTRLPYGSLSLGCEEHLD--LAGTGSFYNEGEAEIVVHHVFSL 554
F T +T L+ +DT C E+ + + S+ N+ EA ++ + V S
Sbjct: 476 FKGKTPLTNYENVLIFIDT---------SCLENYEEQRKDSTSYINKLEANVIKNIVESF 526
Query: 555 ICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
I G I V SPY QV+ +R DL ++V T+D FQGRE + ++IS VRSN
Sbjct: 527 INEGAKREWIGVISPYDDQVELIRSF--DLK----IDVNTVDGFQGREKEIILISFVRSN 580
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRY-FGRVKHAEPG 673
G +GFL D RR+NV++TRA + + ++ +S+T+ N RL+ I+ +G +K E
Sbjct: 581 KNGELGFLNDLRRLNVSLTRAKRKLILIGNSNTLIKNQTYKRLINFIKKGYGGIKWLEIS 640
Query: 674 SF 675
S
Sbjct: 641 SL 642
>gi|390960972|ref|YP_006424806.1| DNA helicase [Thermococcus sp. CL1]
gi|390519280|gb|AFL95012.1| DNA helicase [Thermococcus sp. CL1]
Length = 660
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 212/718 (29%), Positives = 327/718 (45%), Gaps = 145/718 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L +F + L+ +ER AE+E + E+ + GR +++ TI
Sbjct: 7 LTKFISHLKVLIEMERKAEIEAMRAEMRRL------------------SGREREKVGRTI 48
Query: 73 CNLFVVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFV 131
L + + G L F V+ G R T +S GD+V V S+ S + G V
Sbjct: 49 LGL-----NGKVVGEELGYFLVKYGRDREIKTEISVGDLVVV----SKRDPLKSDLIGTV 99
Query: 132 HNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGL 191
G+ I+VALE T + K VR+D A+ +T++R E L L+++G
Sbjct: 100 VEKGK--RFITVALE------TVPEWALKGVRLDL---YANDITFKRWLENLDSLRESGR 148
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
A+ G +E EE++ D++ + + SQ+KA+A L
Sbjct: 149 K-------ALELYLGLREP----EESEEIDFTP------FDRNLNASQRKAVARALGSD- 190
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+I GP GTGKT L E+I + V +G +VL TA +N AVDN+VE+L++ GL +VR+G+
Sbjct: 191 DFFLIHGPFGTGKTRTLVELIRQEVARGNKVLATAESNVAVDNLVERLANSGLKVVRIGH 250
Query: 312 PARISPAVASKSL----------GE-----IVKSKLASFVAEFERKKSDLRKDL--RQCL 354
P+R+S + +L GE ++ LA F + R+ L R+ L
Sbjct: 251 PSRVSKNLHETTLAYLITRHELYGELRELRVIGQNLAEKRDTFTKPSPKYRRGLSDREIL 310
Query: 355 KDDSLAAGIR--------------QLLKQLGKTL---KKKEKETVKEVLSSAQVVLATNT 397
+ S G R ++ +Q+ KT +K E+ +E++ A VVL TN+
Sbjct: 311 RLASKGIGTRGVPARLIREMAEWIKINRQVQKTFDDARKLEERIAREIIREADVVLTTNS 370
Query: 398 GAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEG 438
A ++ ++D+ +R +LAGD QL P ILS KA E
Sbjct: 371 SAGLEVV-DYGSYDVAVIDEATQATIPSVLIPINRARRFVLAGDHKQLPPTILSEKAKEL 429
Query: 439 GIGVSLLERAATLHEGVL------ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH 492
G TL EG++ + LT QYRMN+ + + S+E Y G + + +V S
Sbjct: 430 G---------KTLFEGLIERYPEKSEMLTVQYRMNERLMRFPSREFYDGRIEADESVRSI 480
Query: 493 LLVDTPFVKP----TWITQCP----LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEA 544
LVD P W L+ +DT G+ S N EA
Sbjct: 481 TLVDLGVESPDEGDVWAEVLKPGNVLVFIDTARRENRF------ERQRYGSESRENPLEA 534
Query: 545 EIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREAD 604
+V + L+ GV I V +PY Q + L L LPE VEV T+D +QGRE +
Sbjct: 535 RLVREAIERLLKLGVRSEWIGVITPYDDQ-RDLISSL--LPEE--VEVKTVDGYQGREKE 589
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+++S VRSN G +GFL D RR+NV++TRA + + ++ DSST+ + RL+ +R
Sbjct: 590 VIVLSFVRSNKRGELGFLKDLRRLNVSLTRAKRKLILIGDSSTLSAHATYKRLVEFVR 647
>gi|365984191|ref|XP_003668928.1| hypothetical protein NDAI_0C00240 [Naumovozyma dairenensis CBS 421]
gi|343767696|emb|CCD23685.1| hypothetical protein NDAI_0C00240 [Naumovozyma dairenensis CBS 421]
Length = 699
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 197/697 (28%), Positives = 325/697 (46%), Gaps = 130/697 (18%)
Query: 27 ERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVSTSTGLGG 86
ERD ++E T + LN++P + L+ +G A I NL + + TGLGG
Sbjct: 16 ERDQDVEITSQLLNSLP-----------LSKLIENGYA-------ISNLLLENIKTGLGG 57
Query: 87 ---MHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH----------- 132
+ L + + + GD+V ++ S A H
Sbjct: 58 KLYLELSPDNAINDSIVNNGNIKTGDIVLIKPLISHSNKAKHHRNKKAHEHNGDIDTNDT 117
Query: 133 -NLGEDGC-------TISVALESRHGDPTFSKLFGKSVRIDRIQGL--ADTLTYERNCEA 182
N+ DG I++AL +P + K +R+ L +T+TY+R E+
Sbjct: 118 DNIQCDGTIFKISDQQITIALNESSQEPQ-ENITTKLYSFNRLYLLKTTNTITYKR-MES 175
Query: 183 LM--LLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQK 240
M L + G+ PS + L ++ +L++ ++ + + + SQ+
Sbjct: 176 TMRKLSEFEGI----PSNKIIQYLLNER---PFLKQTTSSNNIQ-----FHNENLNQSQR 223
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300
+AI L + II GPPGTGKT L E+I + V++G+R+LV P+N +VD ++E+L+
Sbjct: 224 EAIKFAL--INDISIIHGPPGTGKTYTLIELIQQLVERGQRILVCGPSNISVDTILERLN 281
Query: 301 DV--GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
V G ++R+G+PAR+ + SL + KS A + + D+ D+ D
Sbjct: 282 GVLPGNLLLRIGHPARLLDSNLRHSLDILSKSGDAGAIVK------DIYHDI------DK 329
Query: 359 LAAGIRQL------------LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA------ 400
+GI++L +K+L K L+ +E++ + +++ A+VV+AT G++
Sbjct: 330 TISGIKKLKSYKDKRESWKEVKELRKELRIRERKVINDLILEAKVVVATLHGSSSRDLCK 389
Query: 401 ----DPLIRRLDTF--DLVGK-------------------RCILAGDQCQLAPVILS--R 433
+ + DT D V + + +LAGD QL P I +
Sbjct: 390 LYNDESVTSLFDTLIIDEVSQSLEPQCWIPLISHYKSDISKLVLAGDNKQLPPTIKTEDN 449
Query: 434 KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
K ++ + +L +R +++ L QYRMN+ I ++S EMY G L++ TVASHL
Sbjct: 450 KLVQKLLQTTLFDRLVSIYGDQFRKLLNVQYRMNEEIMEFSSNEMYEGKLLADVTVASHL 509
Query: 494 LVDTPFVKPTWITQCPLLLLDTR-------LPYGSLSLGCEEHLDLAGTGSFYNEGEAEI 546
L D V T PL+ DT+ + + + + + S +NE EA +
Sbjct: 510 LSDLSGVDSNEDTDIPLIWYDTQGDEFMESVSDSNTNNNNNNNNNNPLASSKFNENEALV 569
Query: 547 VVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADA 605
V HV LI + V I + SPY AQV L+ + D P +E++T+D FQGRE +
Sbjct: 570 VKDHVEKLIASNVPQECIGIISPYSAQVNLLKSLIRTDYP---LIEISTVDGFQGREKEV 626
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+I+S+VRSN VGFL D RR+NVA+TR + + VV
Sbjct: 627 IILSLVRSNDKFEVGFLSDDRRLNVAMTRPKRQLCVV 663
>gi|401624864|gb|EJS42903.1| hcs1p [Saccharomyces arboricola H-6]
Length = 684
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 241/470 (51%), Gaps = 62/470 (13%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV--QQGERVLVTAPTNAA 291
+DSQK AI +N L II GPPGTGKT L E+I + + Q +R+L+ P+N +
Sbjct: 206 NLNDSQKTAINFAINND--LTIIHGPPGTGKTFTLIELIQQLLTKQPEKRILICGPSNIS 263
Query: 292 VDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD 349
VD ++E+L+ + N ++R+G+PAR+ + SL + SK + V + + L ++
Sbjct: 264 VDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLD--ILSKKNTIVKDISHEIDKLIQE 321
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA--------- 400
++ LK+ +K L K LKK+E +T+K+++ +++V+ T G++
Sbjct: 322 NKK-LKNYKQRRENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSRELCSLYR 380
Query: 401 -DPLIRRLDTF--DLVGK------------------RCILAGDQCQLAPVILSR--KALE 437
DP + DT D V + + IL GD QL P I + + +
Sbjct: 381 DDPDFKLFDTLIIDEVSQAMEPQCWIPLIAHQNQFSKLILTGDNKQLPPTIKTEDDQKVI 440
Query: 438 GGIGVSLLER-AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ +L +R + + L QYRMN+ I + S+ MY G L++ TVA+ LL+D
Sbjct: 441 HNLETTLFDRLIKNFPKREMVKFLNVQYRMNEKIMEFPSQSMYHGKLLADVTVANRLLID 500
Query: 497 TP-------FVKPTWITQCPLLLLDTRLPYGSLSLGCE--EHLDLAGT-GSFYNEGEAEI 546
P T+ PL+ DT+ G E E D A GS YNEGE I
Sbjct: 501 LPNVDVTPFDDDDDVDTKLPLIWYDTQ--------GDEFPETADGATILGSKYNEGEIAI 552
Query: 547 VVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAV 606
V H+ SL + V +I + SPY AQV H++ + D + +E++T+D FQGRE D V
Sbjct: 553 VKEHIQSLRSSNVPQESIGIISPYSAQVSHMKRLIHDELKLTDIEISTVDGFQGREKDVV 612
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
I+S+VRSN VGFL + RR+NVA+TR + + VV + + C N +L
Sbjct: 613 ILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEALQRCGNKYL 662
>gi|444317545|ref|XP_004179430.1| hypothetical protein TBLA_0C00960 [Tetrapisispora blattae CBS 6284]
gi|387512471|emb|CCH59911.1| hypothetical protein TBLA_0C00960 [Tetrapisispora blattae CBS 6284]
Length = 694
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 156/458 (34%), Positives = 240/458 (52%), Gaps = 50/458 (10%)
Query: 223 SEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERV 282
S+VK + ++SQK AI L + II GPPGTGKT L E+I + V +G+RV
Sbjct: 209 SDVKFEN---DQLNESQKTAIKFSL--ANSISIIHGPPGTGKTYTLVELIQQLVHRGQRV 263
Query: 283 LVTAPTNAAVDNMVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
LV P+N +VD ++E+LS V +++R+G+PAR+ S SL V SK F + +
Sbjct: 264 LVCGPSNISVDTILERLSKVLPPDSLLRIGHPARLLEKNLSYSLD--VLSKTGDFGSILK 321
Query: 341 RKKSDLRK---DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
+D+ K D+R+ KD G + L+K+L + LK++E + + E + ++V++AT
Sbjct: 322 DILNDIDKTIRDIRKMKKDKDRREGWK-LVKELRQELKEREGKAITEFILKSKVIVATLH 380
Query: 398 GAADPLI---------RRL-DTF--DLVGK-------------------RCILAGDQCQL 426
G++ + R L DT D V + + +LAGD QL
Sbjct: 381 GSSSRELCSVYKDIGDRNLFDTLIIDEVSQSLEPQCWIPIISHYKSDITKLVLAGDNQQL 440
Query: 427 APVILS--RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI 484
+P I + + +G +L +R + L QYRMN I + S++MY L+
Sbjct: 441 SPTIKTTDNSKIIKTLGTTLFDRLVKNYGDQFKLLLNVQYRMNKDIMQFPSEQMYDNKLV 500
Query: 485 SSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEA 544
+ +V+ LL D V T PLL DT+ S E+ D+ S YNEGEA
Sbjct: 501 ADESVSRLLLNDLSGVDDNDETMVPLLWYDTQGDEFPESSDDAENADI--ISSKYNEGEA 558
Query: 545 EIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREAD 604
IV HV L+ + +S I + SPY AQV +L++ L + + +E+ T+D FQGRE +
Sbjct: 559 LIVKDHVIKLMDSNISQEHIGIISPYSAQVSYLKKLLRE--KYPLIEIQTVDGFQGREKE 616
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+I+++VRSN VGFL + RR+NVA+TR K + +V
Sbjct: 617 VIILTLVRSNEKFEVGFLKEERRLNVAMTRPKKQLCIV 654
>gi|401840571|gb|EJT43340.1| HCS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 682
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 155/480 (32%), Positives = 243/480 (50%), Gaps = 73/480 (15%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLVTA 286
+ +DSQK AI N L II GPPGTGKT L E+I + + + +R+L+
Sbjct: 200 SFLNPNLNDSQKAAINFATNND--LTIIHGPPGTGKTFTLIELIQQLLIKNPEKRILICG 257
Query: 287 PTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKS 344
P+N +VD ++E+L+ + N ++R+G+PAR+ + SL + SK + V
Sbjct: 258 PSNISVDTILERLTPLVSNNLLLRIGHPARLLDSNKRHSLD--ILSKKNTIV-------R 308
Query: 345 DLRKDLRQCLKDDSLAAGIRQL------LKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
D+ +++ + ++++ +Q +K L K LKK+E +T+K+++ +++V+ T G
Sbjct: 309 DISQEIDKLIQENKKLKNYKQRRENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHG 368
Query: 399 AA----------DPLIRRLDTF--DLVGK------------------RCILAGDQCQLAP 428
++ DP ++ DT D V + + ILAGD QL P
Sbjct: 369 SSSRELCSLYRNDPNLKLFDTLIIDEVSQAMEPQCWIPLIAHQNQFDKLILAGDNKQLPP 428
Query: 429 VILSR--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLIS 485
I + + + + +L +R + K L QYRMN+ I + S+ MY G LI+
Sbjct: 429 TIKTEDDQNVIRNLETTLFDRLLKIFPKREMIKFLNIQYRMNEKIMEFPSQSMYHGKLIA 488
Query: 486 SSTVASHLLVD------TPFVKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTG 536
+TVAS LL+D +P T+ PL+ DT+ P E D G
Sbjct: 489 DATVASRLLIDISSVDVSPSGDDDIDTKLPLIWYDTQGDEFP--------ETADDATILG 540
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATID 596
S YNEGE IV ++ SL V +I V SPY AQV HL+ + E +E++T+D
Sbjct: 541 SKYNEGEIAIVKKYIESLKSLNVQQDSIGVISPYNAQVSHLKRLIHGKLELNNIEISTVD 600
Query: 597 SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
FQGRE D +I+S+VRSN VGFL + RR+NVA+TR + + VV + + C N +L
Sbjct: 601 GFQGREKDVIILSLVRSNEEFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYL 660
>gi|380742039|tpe|CCE70673.1| TPA: DNA helicase, putative [Pyrococcus abyssi GE5]
Length = 629
Score = 206 bits (524), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 199/637 (31%), Positives = 299/637 (46%), Gaps = 128/637 (20%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV + G +R T +S GD+V + S+ S + G V G+ I VAL
Sbjct: 33 GYFLVKY---GRNREIKTEISVGDLVVI----SKRDPLKSDLLGTVVEKGK--RFIVVAL 83
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
E T + + VRID A+ +T+ R E L ++K G KR +
Sbjct: 84 E------TVPEWALRDVRIDL---YANDITFRRWLENLNTIKKAG--KRALRFYLGLDEP 132
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
E+V + V D K+ + SQ+KAI+ L + ++ GP GTGKT
Sbjct: 133 SQGEEVNF-----------VPFD----KSLNRSQRKAISKALGSE-DFFLVHGPFGTGKT 176
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E+I + V++G +VL TA +N AVDN+VE+LS G+ IVR+G+P+R+S + +L
Sbjct: 177 RTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLA 236
Query: 326 EIVKSK-----------LASFVAEFERKKSDLRKDLRQCLKDDSL---------AAGIR- 364
++ + +AE + R+ L D+ + A G+
Sbjct: 237 YLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSA 296
Query: 365 ----------QLLKQLGKTL---KKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+L +Q+ K +K E+ ++++ A VVL TN+ AA ++ DT+D
Sbjct: 297 RLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADVVLTTNSSAALEVVD-YDTYD 355
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
+ +R +LAGD QL P ILS +A E L R TL
Sbjct: 356 VAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQE-------LSR--TLF 406
Query: 453 EGVL------ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD-TPFVKP--T 503
EG++ + L QYRMN+ I + SKE YGG +I+ +V L D + P +
Sbjct: 407 EGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDS 466
Query: 504 W----ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG--EAEIVVHHVFSLICA 557
W + ++ +DT E + GS E EAEIV V L+
Sbjct: 467 WGKILNPENVIVFIDTS--------KAENKWERQRRGSESRENPLEAEIVAKIVDKLLSI 518
Query: 558 GVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
GV P I V +PY Q + + +PE VEV T+D +QGRE + +I+S+VRSN LG
Sbjct: 519 GVKPEWIGVITPYDDQRDLISMK---VPE--DVEVKTVDGYQGREKEVIILSLVRSNKLG 573
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTI-CHNTF 653
+GFL D RR+NV++TRA + + VV DSST+ H T+
Sbjct: 574 EIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETY 610
>gi|226291739|gb|EEH47167.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 724
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 241/469 (51%), Gaps = 66/469 (14%)
Query: 223 SEVKLDGI-----MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ 277
S V +D I + T +DSQ++AI L R + +I GPPGTGKT L E+I + ++
Sbjct: 241 SPVDMDSIGTIDFIDPTLNDSQREAIRFAL-ASREIALIHGPPGTGKTYTLIELILQLLR 299
Query: 278 QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA 337
+ RVLV P+N +VDN+VE+L+ + +VR+G+PAR+ + SL + ++ A+ +
Sbjct: 300 RNLRVLVCGPSNVSVDNIVERLAPHKVPLVRIGHPARLLSTILDYSLEVLTQTSDAAAIV 359
Query: 338 EFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
+ RK+ ++++ + + I + LK+L K +++E + V +++ ++VVLAT
Sbjct: 360 KDVRKEIEIKQASIRKTRSGRERREIYRDLKELRKEFREREAKCVGNLVTDSKVVLATLH 419
Query: 398 GAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILS------ 432
GA +R FD+V + ILAGD QL P I S
Sbjct: 420 GAGGHQLRN-QKFDVVIIDEASQALEAQCWVPLLSATKAILAGDHLQLPPTIRSVPLKSN 478
Query: 433 -------------------------RKALEG-GIGVSLLERAATLHEGVLATKLTTQYRM 466
KA +G + V+L +R +LH + LTTQYRM
Sbjct: 479 GAESGKSNGEEKATLSADKDSSVGQHKATKGVTLEVTLFDRLLSLHGPAIKRMLTTQYRM 538
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSL 522
++ I + SKE+Y L+++ V LL D + V T T+ PL+ DT+ P +
Sbjct: 539 HEKIMKFPSKELYESKLVAADAVKLRLLKDLQYEVAETDDTREPLVFYDTQGGDFPERTE 598
Query: 523 SLGCE--EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
E + + S N+ EA +V HV +L+ GV P IAV +PY AQ+ L +
Sbjct: 599 EPAVESKQKQEPMFAESKSNDMEAAVVSRHVENLVATGVKPEDIAVVTPYNAQLAILSQL 658
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
L D + G+E+ ++D FQGRE +AVI+S+VRSN VGFLG+ RR+N
Sbjct: 659 LGD--KHPGIELGSVDGFQGREKEAVIVSLVRSNPEHKVGFLGEKRRLN 705
>gi|150866204|ref|XP_001385714.2| hypothetical protein PICST_61353 [Scheffersomyces stipitis CBS
6054]
gi|149387460|gb|ABN67685.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 716
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 201/674 (29%), Positives = 309/674 (45%), Gaps = 113/674 (16%)
Query: 57 FLVSHGRAPQELCD---TICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCV 113
+L S+ P++L + NL V + TGLGG ++ V+ P D + V
Sbjct: 32 YLTSY--PPKQLARLGLAVVNLIVNNVRTGLGGKTIIELGVD-----PALKKDSSDEIQV 84
Query: 114 ---RVCDSRGACATSCIQGFVHN-----------LGEDGCTISVALESRHGDPTFSKLFG 159
RV D + +S + V + + +I+V++E D L+
Sbjct: 85 GTLRVGDIKALANSSKKKENVKTDLTDESLDAVVIKMNQTSIAVSVEEDSTDEKVLNLYN 144
Query: 160 KSVRIDR---IQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEE 216
S + + L++++TY+R + L + G ++N L G+ ++
Sbjct: 145 NSSNDNTRMWLVKLSNSITYKRLISTMNKLGEMGDSEKN---YITRLLLGESVYSPLVKV 201
Query: 217 NDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV 276
+AD D + SQK AI+ +N P+ II GPPGTGKT L E+I + V
Sbjct: 202 TKMAD------DLFFNNQLNQSQKDAISFAVNDS-PITIIHGPPGTGKTYTLIELIKQLV 254
Query: 277 -QQGERVLVTAPTNAAVDNMVEKLSDV---GLNIVRVGNPARISPAVASKSLGEIVKSKL 332
GE+VLV P+N +VD ++E+LS V GL +R+G+PAR+ SL + K+
Sbjct: 255 FNHGEKVLVCGPSNISVDTILERLSPVFRGGL--IRIGHPARLLAGNLQHSLDILSKTNY 312
Query: 333 ----ASFVAEFERKKSDLRKDLRQCL---KDDSLAAGIRQL---LKQLGKTLKKKEKETV 382
+S E R D+ KD+ + L K A R L LK L K L+ +EK+ V
Sbjct: 313 GGGESSGNKEILR---DIEKDIGETLGKIKKSKRYAERRALWADLKVLKKELRVREKKIV 369
Query: 383 KEVLSSAQVVLAT------------------NTGAADPLIRRLDTFDLVG---------- 414
++L A V+L+T N GA +P + D V
Sbjct: 370 SDLLLHADVILSTLHGAGAYELTSLYKEESQNFGADNPFFDTI-IIDEVSQSLEPQCWIP 428
Query: 415 -------KRCILAGDQCQLAPVILSRKALEGGIGV-------------SLLERAATLHEG 454
KR ++AGD QL P + S+ +E I +L +R H G
Sbjct: 429 LVNHLGFKRLVIAGDNMQLPPTVKSKDEIESLISSMSLEQSKVANLEHTLFDRLVQDHNG 488
Query: 455 VLATKL-TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
KL TQYRMN+ I + S+E+Y L + +V L+D V + T+ +
Sbjct: 489 DAFKKLLDTQYRMNENIMKFPSRELYEEKLRAHESVRDISLLDLKGVADSDETRAMCIWY 548
Query: 514 DTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
DT+ P S + D TGS +NE EA +V H+ L+ +GV+P I V SPY
Sbjct: 549 DTQGGDFPEKSSDEDAKSLAD--STGSKFNEMEALVVTQHIKKLLESGVAPEHIGVISPY 606
Query: 571 VAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
AQV L++ + + +E++T+D FQGRE + +IIS+VRSN +GFL D RR+NV
Sbjct: 607 NAQVSVLKKIIQ--KGGSRIEISTVDGFQGREKEVIIISLVRSNDNREIGFLKDKRRLNV 664
Query: 631 AITRACKHVAVVCD 644
A+TR + + V+ D
Sbjct: 665 AMTRPKRQLCVIGD 678
>gi|448080065|ref|XP_004194533.1| Piso0_005032 [Millerozyma farinosa CBS 7064]
gi|359375955|emb|CCE86537.1| Piso0_005032 [Millerozyma farinosa CBS 7064]
Length = 738
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 221/759 (29%), Positives = 340/759 (44%), Gaps = 125/759 (16%)
Query: 14 DEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTIC 73
++F +L+ IE+ A+ T E LN +P + L +G A
Sbjct: 8 EQFVSGFKQLVDIEQKADALLTNEYLNKY-SPKK----------LQKYGLAA-------T 49
Query: 74 NLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVC---VRVCDSRGACATSCIQGF 130
NL V + GLGG ++ ++ + L GD+ VRV + + S Q
Sbjct: 50 NLVVKNARNGLGGNTVLELCLDSAVKADDQELDSGDLKVGDIVRVEKMKSSQEQSSNQNK 109
Query: 131 VHNLGED-------------GCTISVALESRHGDPTFSKLFGKSVRIDRIQ--GLADTLT 175
++ I+VA+ + + + L+ + ++ L++++T
Sbjct: 110 DSRQDDERNSYLDAVITKITSSVINVAVSENNSEESIINLYNNTQNEQKVWLVKLSNSVT 169
Query: 176 YERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTF 235
Y+R L L + + + + F L + D A ++K ++
Sbjct: 170 YKRMISTLNKLGEVDIASIPNQVIQYLLGF------RTLHKADAAT-KKLKDKDFFNQSL 222
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDN 294
+ SQK+AI L + P II GPPGTGKT L EII + +++Q ERVLV P+N +VD
Sbjct: 223 NASQKEAINFSLFES-PFSIIHGPPGTGKTYTLIEIIKQLSLKQNERVLVCGPSNVSVDT 281
Query: 295 MVEKL----------------------SDVGLNIVRVGNPARISPAVASKSLGEIVKSKL 332
++E+L S ++R+G+PAR+ + SL E++
Sbjct: 282 ILERLASEFDSKSSIKEKKSKSQRKTGSRDPSQLIRIGHPARLLDSCLKHSL-EVLSKSD 340
Query: 333 ASFVAEFERKKSDLRKDLRQCLKD--DSLAAGIRQLL----KQLGKTLKKKEKETVKEVL 386
+ ++ D+ D+ + L+ G R+ L K K L+K+E + V E++
Sbjct: 341 SGSGSDSRAILKDIENDINETLRKVKKCRNYGERRALWNDLKGYRKELRKRESKLVSELV 400
Query: 387 SSAQVVLATNTGAA---------DP---LIRRLDTFDLV--------------------- 413
A+V+LAT G+ +P I+ + FD +
Sbjct: 401 VGAKVILATLHGSGGYDLTSIYKNPEFATIKDGNLFDTIIIDEVSQSLEPQCWIPLISHM 460
Query: 414 -GKRCILAGDQCQLAPVILSRK----ALEG---------GIGVSLLERAATLHEGVLATK 459
KR I+AGD QL P + S K A +G + V+L +R G K
Sbjct: 461 GFKRLIIAGDNLQLPPTVKSSKLDSPAAQGVAVSSPAHRSLEVTLFDRIVRECNGDAYKK 520
Query: 460 L-TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L TQYRMNDAI ++ S+E+Y G L + S+V + LL D P V+PT T P + DT+
Sbjct: 521 LLDTQYRMNDAIMAFPSRELYEGKLKADSSVKNILLRDMPNVQPTDETSAPCIWYDTQGG 580
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
+ E+ GS YNE E V H+ LI AGV+P I V SPY AQV LR
Sbjct: 581 DYPEQMDESENPLTDSMGSKYNEMELLAVKKHIDLLIAAGVAPRDIGVISPYAAQVARLR 640
Query: 579 ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
+ L E VE ATID+FQGRE +A+IIS+VRSN AVGFL + RR+NVA+TR +H
Sbjct: 641 KALA-AAELEAVEAATIDAFQGREKEAIIISLVRSNDDRAVGFLSEKRRLNVAMTRPKRH 699
Query: 639 VAVVCDSSTI--CHNTFLARLLRHIRYFGRVKHAEPGSF 675
+ VV D + C FL H+ + + + G +
Sbjct: 700 LCVVGDMDLMSRCDVPFLHHWAAHVDSSYEILYPDLGDY 738
>gi|388583947|gb|EIM24248.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 539
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 157/508 (30%), Positives = 237/508 (46%), Gaps = 103/508 (20%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ T + SQ+ A+ L L K L +I GPPGTGK+ L EII + + Q +R+LV +N
Sbjct: 21 LDNTLNQSQRDAVNLAL-KADHLALIHGPPGTGKSYTLIEIIRQLINQDKRILVCGSSNL 79
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLRKD 349
AVDN++E+LS + + R+G+PARI + +++L + S V + +++ DL KD
Sbjct: 80 AVDNILERLSVYNIPVTRLGHPARILNNLQTQTLEYQTSHSHQNEIVKDVKKELEDLMKD 139
Query: 350 LRQCLKDDSLAAGIRQL-----LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI 404
LKD + +++ +K+L K +K+ + +++ A+VVL T GA +
Sbjct: 140 ----LKDGRIKGKLKRKNAWNEVKELRKEHRKRSIGVLNSLMTRAKVVLCTLHGAGGRQL 195
Query: 405 RRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKAL--------- 436
+ FD L K+ ILAGD QL P +L+R
Sbjct: 196 QHQKEFDVCVIDESTQALEPSCLIPVLKAKKLILAGDPLQLPPTVLARPGQKKKERMKII 255
Query: 437 ----------------------EGGIGVSLLERAAT---------------------LHE 453
E G S + R A +H
Sbjct: 256 PKEPKTKKEKEISDKLAEVNISEHGNAASKISRVAPTQPTLKPLKSLEESLFERLIGIHG 315
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV------KPTWITQ 507
+ L+ QYRM+D I + S+ MY L + V+ L++ P V K
Sbjct: 316 NSIKCLLSVQYRMHDMIMKYPSEAMYNSKLTAYEAVSKRTLMELPNVVDNDTEKDEVELS 375
Query: 508 CPLLLLDT-------RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS 560
PL+ +DT R+ + G E GS YNE E EI+ V L+ AGV
Sbjct: 376 SPLVFIDTDGYDFFERIDSEEMKKGAVEE------GSKYNENEVEIIKRKVQDLVHAGVR 429
Query: 561 PSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
S IA+ +PY AQV HL + P+ G E+ ++D QGRE + VI+S+VRSN G VG
Sbjct: 430 DSQIAIITPYQAQVGHLNNAVK--PQFPGCEIGSVDGVQGREQEVVIMSLVRSNETGEVG 487
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTI 648
FL + RR+NVA+TRA + + +V +S+TI
Sbjct: 488 FLKEERRLNVAMTRAKRQLIIVGNSATI 515
>gi|14521437|ref|NP_126913.1| DNA helicase, [Pyrococcus abyssi GE5]
gi|5458655|emb|CAB50143.1| DNA helicase, putative [Pyrococcus abyssi GE5]
Length = 653
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 199/637 (31%), Positives = 299/637 (46%), Gaps = 128/637 (20%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV + G +R T +S GD+V + S+ S + G V G+ I VAL
Sbjct: 57 GYFLVKY---GRNREIKTEISVGDLVVI----SKRDPLKSDLLGTVVEKGK--RFIVVAL 107
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
E T + + VRID A+ +T+ R E L ++K G KR +
Sbjct: 108 E------TVPEWALRDVRIDL---YANDITFRRWLENLNTIKKAG--KRALRFYLGLDEP 156
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
E+V + V D K+ + SQ+KAI+ L + ++ GP GTGKT
Sbjct: 157 SQGEEVNF-----------VPFD----KSLNRSQRKAISKALGSE-DFFLVHGPFGTGKT 200
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E+I + V++G +VL TA +N AVDN+VE+LS G+ IVR+G+P+R+S + +L
Sbjct: 201 RTLVELIRQEVKRGNKVLATAESNVAVDNLVERLSRSGIKIVRIGHPSRVSKHLHETTLA 260
Query: 326 EIVKSK-----------LASFVAEFERKKSDLRKDLRQCLKDDSL---------AAGIR- 364
++ + +AE + R+ L D+ + A G+
Sbjct: 261 YLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDEEIIKLAERKRGARGLSA 320
Query: 365 ----------QLLKQLGKTL---KKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+L +Q+ K +K E+ ++++ A VVL TN+ AA ++ DT+D
Sbjct: 321 RLIMEMAEWIKLNRQVQKAFDDARKLEERIARDIIREADVVLTTNSSAALEVVD-YDTYD 379
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
+ +R +LAGD QL P ILS +A E L R TL
Sbjct: 380 VAIIDEATQSTIPSILIPLNKVERFVLAGDHKQLPPTILSLEAQE-------LSR--TLF 430
Query: 453 EGVL------ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD-TPFVKP--T 503
EG++ + L QYRMN+ I + SKE YGG +I+ +V L D + P +
Sbjct: 431 EGLIERYPWKSEMLVVQYRMNERIMEFPSKEFYGGKIIADESVRGITLRDLVEYQSPNDS 490
Query: 504 W----ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG--EAEIVVHHVFSLICA 557
W + ++ +DT E + GS E EAEIV V L+
Sbjct: 491 WGKILNPENVIVFIDTS--------KAENKWERQRRGSESRENPLEAEIVAKIVDKLLSI 542
Query: 558 GVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
GV P I V +PY Q + + +PE VEV T+D +QGRE + +I+S+VRSN LG
Sbjct: 543 GVKPEWIGVITPYDDQRDLISMK---VPE--DVEVKTVDGYQGREKEVIILSLVRSNKLG 597
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTI-CHNTF 653
+GFL D RR+NV++TRA + + VV DSST+ H T+
Sbjct: 598 EIGFLKDLRRLNVSLTRAKRKLIVVGDSSTLSSHETY 634
>gi|320580709|gb|EFW94931.1| Hexameric DNA polymerase alpha-associated DNA helicase A [Ogataea
parapolymorpha DL-1]
Length = 712
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 243/479 (50%), Gaps = 50/479 (10%)
Query: 222 WSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV----- 276
+ + KL+ G +DSQK A+ L L II GPPGTGKT + E++ + V
Sbjct: 215 YQKTKLNWFNG-NLNDSQKNAVQFSLVSN--LSIIHGPPGTGKTSTIVELVKQLVLRKRE 271
Query: 277 -QQGERVLVTAPTNAAVDNMVEKLSDVGLN-----IVRVGNPARISPAVASKSLGEIVKS 330
+ +R+L+ P+N ++D ++E+LS + +VR+G+PAR+ P + SL I +S
Sbjct: 272 SEGSKRILICGPSNISIDTILERLSSFFSDNKYSRLVRIGHPARMLPQILRHSLDLITES 331
Query: 331 KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQ 390
+ + + ++ + L + +++ K + Q +K+L K L+ + K+ +VLS+++
Sbjct: 332 ESGEILKDILQEINQLTRKIKKT-KSYRERRELYQTIKELKKDLRLRSKKAYSDVLSNSE 390
Query: 391 VVLATNTGAADPLI-----RRLDTFDLVG----------------------KRCILAGDQ 423
VV AT G++ I R D FD + K+ ++AGD
Sbjct: 391 VVAATLHGSSAREIVNCIRERGDLFDTIIIDEVSQALEPSCWIPLMYHQSLKQLVIAGDN 450
Query: 424 CQLAPVILSRKALE--GGIGVSLLERAATLHEG--VLATKLTTQYRMNDAIASWASKEMY 479
QL+P I ++K + + +L +R +H+ L QYRMN I S+ S +Y
Sbjct: 451 KQLSPTIKTKKNAKVVNTLSKTLFDRLIEVHKNHQEFTCFLDIQYRMNKKIMSFFSDALY 510
Query: 480 GGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG-TGSF 538
GG LI+ S+V + L D P+VK ++ G D AG S
Sbjct: 511 GGKLIAHSSVENIKLSDLPYVKSPQDDNVAEEVIWYDTQGGDYPEADSAEDDSAGLQASR 570
Query: 539 YNEGEAEIVVHHVFSLI-CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA--GVEVATI 595
YN+GE +V+ HV SL+ V I + SPY AQV LR+ L + E +E++T+
Sbjct: 571 YNDGECLVVLKHVRSLVEDHNVKQEDIGIISPYSAQVSSLRKLLREETEHPFPDIEISTV 630
Query: 596 DSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFL 654
D FQGRE + +I+S+VRSN VGFL D RRMNV+I+RA + + VV D TI + +
Sbjct: 631 DGFQGREKEVIILSLVRSNDSHDVGFLNDYRRMNVSISRAKRQLCVVGDMETISESNVV 689
>gi|222445377|ref|ZP_03607892.1| hypothetical protein METSMIALI_01005 [Methanobrevibacter smithii
DSM 2375]
gi|222434942|gb|EEE42107.1| putative DNA helicase [Methanobrevibacter smithii DSM 2375]
Length = 658
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 207/726 (28%), Positives = 329/726 (45%), Gaps = 161/726 (22%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEEL-NAVPTPDENSDSSKPIEFLVSHGRAPQELCDT 71
+ ++ +++ +L+ ERDAE+E E+ N P E S GRA ++
Sbjct: 1 MKKYIKQLIKLINYERDAEIELMTNEIKNLSPKKRE------------SLGRAINKV--- 45
Query: 72 ICNLFVVSTSTGLG---GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
LG G +V F G T +S GDMV + S G S +
Sbjct: 46 --------KGKYLGKQLGSQIVQF---GRSEKIETEISVGDMVLI----STGYPLRSDLT 90
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V G I VA E P ++ K VRID A+ +T+ R + LM L
Sbjct: 91 GTVVEKG--ARFIKVAFEK--SIPKWT--LKKKVRIDL---YANDVTFRRMEDNLMHLNT 141
Query: 189 NG-------LHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKK 241
G L KR P +EN + + + K+ ++SQK
Sbjct: 142 KGKNALEYSLKKRAP------------------KENKKEKYID-----FIDKSLNESQKN 178
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS- 300
A+ +N + +I GP GTGKT L E+I + V+Q +VLVTA +N+AVDN++++LS
Sbjct: 179 AVRNAVNTEN-FFLIHGPFGTGKTRTLVELIQQEVRQSNKVLVTAESNSAVDNILDRLSQ 237
Query: 301 DVGLNIVRVGNPARISPAVASKSL----------GEIVKS-KLASFVAEFERKKSDLRKD 349
+ L I R+G+P R+S + SL G+I K+ K ++E + +
Sbjct: 238 NKKLKITRLGHPQRVSKENIAYSLAYKAENHQLTGKINKNYKRIEQISETRDRFTKPTPQ 297
Query: 350 LRQCLKD---------------------DSLAAGI--RQLLKQLGKTLKKKEKETVKEVL 386
R+ D +S+A + + + ++ +KK E + VK+++
Sbjct: 298 YRRGFSDSDILYNASKGKGGRGISSSKMESMANWLLENEKISEIHYKIKKLENKIVKDII 357
Query: 387 SSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLA 427
+S+ ++L+TN+ AA I R F++V +R ILAGD QL
Sbjct: 358 NSSDIILSTNSTAAIEEIART-KFNVVIVDEASQATIPSILIPLSKARRFILAGDHKQLP 416
Query: 428 PVILSRKA--LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLIS 485
P I+S+KA LE + L+++ ++ L QYRMN + + + E Y G+L S
Sbjct: 417 PTIISKKAHFLEKTLFEELIKKYPNK-----SSLLNVQYRMNSFLMKFPNSEFYNGNLKS 471
Query: 486 SSTVAS------------HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S+V L ++ K PLL +DT +L E+HL
Sbjct: 472 DSSVDDINLDEIIDLEELSRLKESDVEKQLHNNLKPLLFIDT----SNLKNNEEKHL--K 525
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVA 593
+ S N+ EA+I + G++P I + SPY QV ++ D +P +EV
Sbjct: 526 DSKSIINQSEADIATSIAKFYLGTGINPKDIGIISPYADQVNLIQ---DKIP----IEVK 578
Query: 594 TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTF 653
++D FQGRE + +IIS VRSN +GFL D RR+NVAITRA + + V+ + +T+ N+
Sbjct: 579 SVDGFQGREKEIIIISTVRSNKNKDIGFLKDLRRLNVAITRAKRKLIVIGNKNTLKGNST 638
Query: 654 LARLLR 659
++L++
Sbjct: 639 YSKLIK 644
>gi|367011180|ref|XP_003680091.1| hypothetical protein TDEL_0B07510 [Torulaspora delbrueckii]
gi|359747749|emb|CCE90880.1| hypothetical protein TDEL_0B07510 [Torulaspora delbrueckii]
Length = 667
Score = 205 bits (521), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 195/714 (27%), Positives = 328/714 (45%), Gaps = 128/714 (17%)
Query: 27 ERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVSTSTGLGG 86
ERD ++E T + LN + P LV G A I NL + + TGLGG
Sbjct: 16 ERDQDVEITSKLLNTLSLPK-----------LVDAGYA-------ISNLNLENLRTGLGG 57
Query: 87 MHLVLFRVEGNHRLPPTTLSPGDMVCVRVC-------------------DSRGACATSCI 127
L+ G R +S GD+ + D C
Sbjct: 58 K---LYMELGPDRAISDEISRGDIKSGDIVLIKPKTSGSRKNRRNGEKEDEEDQC----- 109
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
G V + + I+ + + + ++LF S R+ + +T+TY+R E+ M +
Sbjct: 110 DGVVFKITDRQLVITT---NENQEDAAARLFA-SNRL-YVLKTTNTITYQR-MESSM--R 161
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K G + P+ L D+ + ND++ K+ ++ Q+ AI L
Sbjct: 162 KLGEFESVPNNKITQYLLTDRPFLAQKPSNDVS---------FHNKSLNEPQQDAIRFAL 212
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV--GLN 305
+ II GPPGTGKT L E+I + +G+R+LV P+N AVD ++E+L+ V G
Sbjct: 213 --ANDICIIHGPPGTGKTYTLIELIQQLCDKGQRILVCGPSNMAVDTILERLAKVLPGNL 270
Query: 306 IVRVGNPARISPAVASKSLGEIVKSK-----LASFVAEFERKKSDLRK-----DLRQCLK 355
++R+G+PAR+ + + SL + KS L E +RK + ++K + RQ
Sbjct: 271 LLRIGHPARLLDSNLAHSLDILSKSGSAGGILKDIRDEIDRKIASIKKIKSSRERRQGWN 330
Query: 356 DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD----------PLIR 405
D +K+L K L+++E++ + +++ A+V++AT G++ P +
Sbjct: 331 D----------VKELRKELRQRERKVIVDLILEARVIVATLHGSSSRELCSVYHQTPKLF 380
Query: 406 RLDTFDLVGK-------------------RCILAGDQCQLAPVILSRK--ALEGGIGVSL 444
D V + + +LAGD QL P I + ++ + +L
Sbjct: 381 DCLIIDEVSQSLEPQCWIPLISHYRSDISKLVLAGDNKQLPPTIKTEDDANIKKTLQTTL 440
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
+R + L+ QYRMN+ I + S+ +Y G L + +VA+ +L D P V
Sbjct: 441 FDRLVAYYGDSFKRLLSVQYRMNEEIMKFPSETLYNGQLAADDSVATKILSDLPGVDSND 500
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
T P + DT+ G + E + + S +NE EA +V H+ LI + VS ++I
Sbjct: 501 DTDAPFIWYDTQ---GDEFI--ESSQEESVVASKFNENEALLVKDHIQRLIDSNVSQNSI 555
Query: 565 AVQSPYVAQVQHLRERLDD-LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
V +PY AQV L+ L + P+ +E++T+D FQGRE + +I+S+VRSN +GFL
Sbjct: 556 GVIAPYSAQVTILKHFLSEKFPQ---IEISTVDGFQGREKEVIILSLVRSNDKFEIGFLK 612
Query: 624 DSRRMNVAITRACKHVAVVCDSSTI--CHNTFLARLLRHIRYFGRVKHAEPGSF 675
D RR+NVA+TR K + V+ + T+ C++ FL ++ +++ + G
Sbjct: 613 DERRLNVAMTRPKKQLCVIGNIETLQRCNSKFLKAWAKYGETNADIRYPDIGDL 666
>gi|295667237|ref|XP_002794168.1| helicase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286274|gb|EEH41840.1| helicase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 739
Score = 205 bits (521), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 153/471 (32%), Positives = 244/471 (51%), Gaps = 66/471 (14%)
Query: 223 SEVKLDGI-----MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ 277
S V +D I + T +DSQ++AI L R + +I GPPGTGKT L E+I + ++
Sbjct: 241 SPVDMDSIGTIDFIDPTLNDSQREAIRFAL-ASREIALIHGPPGTGKTYTLIELILQLLR 299
Query: 278 QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA 337
+ RVLV P+N +VDN+VE+L+ + +VR+G+PAR+ + SL + ++ A+ +
Sbjct: 300 RNLRVLVCGPSNVSVDNIVERLAPHKVPLVRIGHPARLLSTILDYSLEVLTQTSDAAAIV 359
Query: 338 EFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
+ RK+ ++++ + + I + LK+L K +++E + V +++ ++VVLAT
Sbjct: 360 KDVRKEIEIKQASIRKTRSGRERREIYRDLKELRKEFREREAKCVGNLVTDSKVVLATLH 419
Query: 398 GAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILS------ 432
GA +R FD+V + ILAGD QL P I S
Sbjct: 420 GAGGHQLRN-QKFDVVIIDEASQALEAQCWVPLLSATKAILAGDHLQLPPTIKSTPLKSN 478
Query: 433 -------------------------RKALEG-GIGVSLLERAATLHEGVLATKLTTQYRM 466
KA +G + V+L +R +LH + LTTQYRM
Sbjct: 479 GAESGKLSGEEKATLSADRDSSVGQHKATKGVTLEVTLFDRLLSLHGPAIKRMLTTQYRM 538
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSL 522
++ I + SKE+Y L+++ V LL + + V T T+ PL+ DT+ P +
Sbjct: 539 HEKIMKFPSKELYESKLVAADAVKLRLLKNLQYEVAETDDTREPLVFYDTQGGDFPERTE 598
Query: 523 --SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
++ ++ + S N+ EA +V HV +L+ GV P IAV +PY AQ+ L +
Sbjct: 599 EPAVASKQKQEPMFAESKSNDMEAAVVARHVENLVATGVKPEDIAVVTPYNAQLTILSQL 658
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
L D + G+E+ ++D FQGRE +AVI+S+VRSN VGFLG+ RR+N A
Sbjct: 659 LRD--KHPGIELGSVDGFQGREKEAVIVSLVRSNPEHKVGFLGEKRRLNGA 707
>gi|255036839|ref|YP_003087460.1| type III restriction protein res subunit [Dyadobacter fermentans
DSM 18053]
gi|254949595|gb|ACT94295.1| type III restriction protein res subunit [Dyadobacter fermentans
DSM 18053]
Length = 636
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 155/471 (32%), Positives = 233/471 (49%), Gaps = 80/471 (16%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER-VLVTAPTNAAVD 293
+ SQ++A+ L+ + L I+ GPPGTGKT L + I V++ R +LV AP+N AVD
Sbjct: 179 LNPSQQRAVQNILSAQE-LAIVHGPPGTGKTTTLVQAIKALVKKDNRPILVVAPSNTAVD 237
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKS---------------KLASFVAE 338
+ EKLS+ GLN++RVGNP R+S + + +L + S + + +
Sbjct: 238 LLSEKLSEEGLNVLRVGNPVRVSERLTALTLDSKMSSHASVKDIKTLKKQANEYKNMAHK 297
Query: 339 FERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
++R +D R+ L D++ ++ K + E+ + ++L+ QVV AT G
Sbjct: 298 YKRHFGKAERDQRKALFDEA---------HRIMKDVANMEQYIIDDLLTKTQVVTATLVG 348
Query: 399 AADPLIRRLDTFDLV------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
+ +R + +V ++ + AGD QL P I S +A +GG+
Sbjct: 349 SNHFTVRNMKYRTVVIDEAGQALEPACWIPILKAEKVVFAGDHLQLPPTIKSEEAAKGGL 408
Query: 441 GVSLLERAATLH-EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+LLE+ LH E V+ L QYRMN+AI ++SK Y L + +VA +L
Sbjct: 409 STTLLEKCVALHPESVVL--LEEQYRMNEAIMGYSSKVFYHDKLKAHESVAGRVL----- 461
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC--A 557
+ + PL +DT GC L GT S N EA + H+ L A
Sbjct: 462 ----FPGEAPLAFVDT--------AGCGFDDKLEGTSS-TNPEEAAFLFKHLTQLAAEFA 508
Query: 558 GVSPS-----AIAVQSPYVAQVQHLRERLDDLPEAA----GVEVATIDSFQGREADAVII 608
V+P +IA+ SPY Q+ L+ L P + V TIDSFQG+E D V I
Sbjct: 509 KVNPKPESFPSIAIISPYKEQINILKNLLAHAPHLQLYLDKIAVNTIDSFQGQERDVVYI 568
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC----HNTFLA 655
SM R+N G +GFL D RRMNVA+TRA K + V+ DS+T+ + F+A
Sbjct: 569 SMTRNNIEGQIGFLADIRRMNVAMTRARKKLVVIGDSATLSVLPFYENFIA 619
>gi|403216944|emb|CCK71439.1| hypothetical protein KNAG_0H00230 [Kazachstania naganishii CBS
8797]
Length = 685
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 160/480 (33%), Positives = 244/480 (50%), Gaps = 74/480 (15%)
Query: 227 LDGIMGKTFDD----SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV-QQGER 281
L GI K F+D SQ+ AIA + + L II GPPGTGKT L E+I + V + +R
Sbjct: 205 LTGI--KYFNDQLNKSQQDAIAFSMENE--LSIIHGPPGTGKTYTLVELILQLVLNKNQR 260
Query: 282 VLVTAPTNAAVDNMVEKLSD--VGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEF 339
VLV P+N +VD ++E+LS G ++R+G+PAR+ + SL + K +
Sbjct: 261 VLVCGPSNISVDTILERLSAHLPGNLLLRIGHPARLLKSNLLHSLDILTKRGDNGALL-- 318
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQL------------LKQLGKTLKKKEKETVKEVLS 387
+D+ KD+ D AG+R+L +K L K L+ +E+ V +++
Sbjct: 319 ----NDIYKDI------DKTIAGVRKLKSYKDRREAWNEVKTLRKELRARERSIVTDLIL 368
Query: 388 SAQVVLATNTGAA--------DPLIRRLDT--FDLVGK-------------------RCI 418
A+VV+AT GA+ D + + DT D V + + +
Sbjct: 369 EAKVVVATLHGASSKELLKAYDEVPKLFDTVIIDEVSQSLEPQCWIPLISHYKSNISKLV 428
Query: 419 LAGDQCQLAPVILSRK--ALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASK 476
LAGD QL P + + + + +L +R + V L QYRMN+ I + SK
Sbjct: 429 LAGDDKQLPPTVKTEDNAKFQKQLETTLFDRLVKNYGNVFKKFLDVQYRMNETIMEFPSK 488
Query: 477 EMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG 536
MY G L++ +VA+ LL+D P T+ ++ DT+ G L E+ D A
Sbjct: 489 AMYNGKLLAHDSVATKLLLDLPGCDTAEDTEVAVIWYDTQ---GDFFLESEDS-DSAVFA 544
Query: 537 SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATID 596
S YNE EA +V H+ LI VSP I + SPY AQV ++ + ++ +E++T+D
Sbjct: 545 SKYNENEALVVKSHILKLIGDHVSPECIGIISPYSAQVTLIKGMIREM--YPSIEISTVD 602
Query: 597 SFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
FQGRE + +I+S+VRSN VGFL ++RR+NVA+TR K + VV + + C N +L
Sbjct: 603 GFQGREKEVIILSLVRSNDKFEVGFLQENRRLNVAMTRPKKQLCVVGNIEMLERCGNKYL 662
>gi|398345459|ref|ZP_10530162.1| DNA and RNA helicase [Leptospira inadai serovar Lyme str. 10]
Length = 627
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 241/478 (50%), Gaps = 72/478 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+DSQ++AI+ L + L+++ GPPGTGKT + E I V +G+++L +APTNAA D
Sbjct: 175 LNDSQRRAISAILQTE-DLILLHGPPGTGKTKTITEAIRILVDRGKKILASAPTNAATDL 233
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVAS--------------------KSLGEIVKSKLAS 334
+ E L +G++ +R+G+PAR+S +V S K +GE++K K
Sbjct: 234 LAESLGRMGVSALRIGHPARMSESVLSVSLDANLNRHPDFKLIERDKKEIGELLK-KAGK 292
Query: 335 FVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLA 394
+ F R++++ RK L Q K+L K +++++K V+ +L S V++
Sbjct: 293 YKRTFGREEAEDRKRLYQE-------------AKELRKGIRERQKILVRYLLESHPVIVC 339
Query: 395 TNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKA 435
T+TGA+ L+ +L+ FD L +R ++AGD QL P +LS
Sbjct: 340 THTGASSSLLDKLN-FDYAVLDEGSQATEPASWIPILRAERIVIAGDPRQLPPTVLSEDP 398
Query: 436 LEGGIGVSLLERAATLHEGV-LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL 494
L + + L+ER + + L TQYRM D I S+ ++ Y G L+S + +
Sbjct: 399 L---LKIPLMERLLDSMDSIGRVYLLDTQYRMTDPIQSFPNRRFYAGRLVSG--IPEEIR 453
Query: 495 VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSL 554
PF T + + +DT S + EE D S N EAE + + +
Sbjct: 454 SANPFPSETPLFGSSFVFIDT-----SGTDSGEELFD----ASLGNRWEAEFTITILKRI 504
Query: 555 ICAGVSPSAIAVQSPYVAQVQHLRERL-DDLP-EAAGVEVATIDSFQGREADAVIISMVR 612
+ +G P + + SPY Q L E L +LP +E+ T+DSFQGRE VI S+VR
Sbjct: 505 LESGWLPEDLVLISPYRYQRFLLEEILRKELPIVGETIEIETVDSFQGREKKGVIFSLVR 564
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
SN+ G +GFL + RR NV +TRA + + ++ D ST+ F L++ G V+ A
Sbjct: 565 SNSEGNIGFLSEERRWNVGMTRAKRLLVLIGDGSTLGEQEFFQDLIQEAESCGEVRTA 622
>gi|148270052|ref|YP_001244512.1| putative DNA helicase [Thermotoga petrophila RKU-1]
gi|147735596|gb|ABQ46936.1| putative DNA helicase [Thermotoga petrophila RKU-1]
Length = 650
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 205/718 (28%), Positives = 329/718 (45%), Gaps = 140/718 (19%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+ +F +++ L+ +ER+AE+ +E+ + G ++ T+
Sbjct: 3 VQQFIKKLVRLVELERNAEINAMLDEMKRL------------------SGEEREKKGRTV 44
Query: 73 CNLFVVSTSTGLG---GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L T +G G LV F G + T + GD+V + S+G S G
Sbjct: 45 LGL----TGKFIGEELGYFLVRF---GRRKKIDTEIGVGDLVLI----SKGNPLKSDYTG 93
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V GE T++V P++ KL K+VRID A +T+ R E LM L
Sbjct: 94 TVVEKGERFITVAV-----DRLPSW-KL--KNVRIDL---FASDITFRRQIENLMTLSSE 142
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
G A+ L G ++ EE + + E ++SQ++A++L L
Sbjct: 143 GKK-------ALEFLLGKRKPEESFEE-EFTPFDE---------GLNESQREAVSLALGS 185
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
+I GP GTGKT L E I + V +G+++LVTA +N AVDN+VE+L +++VR+
Sbjct: 186 S-DFFLIHGPFGTGKTRTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWG-KVSLVRI 243
Query: 310 GNPARISPAVASKSLGEIV------------KSKLASFVA----------EFERKKSDLR 347
G+P+R+S + +L + K +LA + ++ R SD +
Sbjct: 244 GHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELAKLIEKRDSFTKPSPQWRRGLSD-K 302
Query: 348 KDLRQCLKDDSLAAGIRQLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLA 394
K L K+ S ++ +K++ + +K +KE+ ++ AQVVL+
Sbjct: 303 KILEYAEKNWSARGASKEKIKEMAEWIKLNSQIQDIRDLIERKEEIIASRIVREAQVVLS 362
Query: 395 TNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKA 435
TN+ AA +I + FD+V GK+ +LAGD QL P ILS A
Sbjct: 363 TNSSAALEIISGI-VFDVVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDA 421
Query: 436 LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV 495
+ + +L E T + ++ L TQYRMN+ + + S+E Y G L ++ V + L
Sbjct: 422 KD--LSRTLFEELITRYPEK-SSLLDTQYRMNELLMEFPSEEFYDGKLKAAEKVRNITLF 478
Query: 496 D----TPFVKPTW-ITQCP---LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIV 547
D P W + P L+ +DT+ ++ + S N EA+IV
Sbjct: 479 DLGVEIPNFGKFWDVVLSPKNVLVFIDTKNRSDRFERQRKD------SPSRENPLEAQIV 532
Query: 548 VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVI 607
V L+ GV I + +PY QV +RE ++ A VEV ++D FQGRE + +I
Sbjct: 533 KEVVEKLLSMGVKEDWIGIITPYDDQVNLIRELIE-----AKVEVHSVDGFQGREKEVII 587
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
IS VRSN G +GFL D RR+NV++TRA + + DSST+ + R + ++ G
Sbjct: 588 ISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKG 645
>gi|67901330|ref|XP_680921.1| hypothetical protein AN7652.2 [Aspergillus nidulans FGSC A4]
gi|40742648|gb|EAA61838.1| hypothetical protein AN7652.2 [Aspergillus nidulans FGSC A4]
gi|259483986|tpe|CBF79824.1| TPA: DNA helicase, putative (AFU_orthologue; AFUA_2G01090)
[Aspergillus nidulans FGSC A4]
Length = 686
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 153/437 (35%), Positives = 232/437 (53%), Gaps = 50/437 (11%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +DSQK+AI L R + +I GPPGTGKT L E+I + V++ RVLV P+N +VD
Sbjct: 247 TLNDSQKEAIQFAL-ASRDIALIHGPPGTGKTHTLIELIIQMVKRNLRVLVCGPSNISVD 305
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+VE+L+ + +VR+G+PAR+ P+V SL + ++ A+ + RK+ D + +
Sbjct: 306 NIVERLAPSKIPVVRIGHPARLLPSVLDHSLEVLTQTSDAAAIVRDVRKEIDEKHASIRK 365
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
+ I Q +++L + +++E + V ++ + VVLAT GA ++ FD+V
Sbjct: 366 TRFGREKRAIYQDIRELRREFRERESKCVDNLVRGSSVVLATLHGAGGHQLKN-QKFDVV 424
Query: 414 -------------------GKRCILAGDQCQLAPVILS--RKALEGG------------I 440
+ +LAGD QL P + S K E G +
Sbjct: 425 IIDEASQALEAQCWIPLLSAPKVVLAGDHLQLPPTVKSTPHKTKEAGEDGEQDANGSFSL 484
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF- 499
+L +R +LH + LTTQYRM++ I + S E+Y LI++ +V S LL D P+
Sbjct: 485 EKTLFDRLLSLHGPGIKRMLTTQYRMHENIMRFPSDELYESKLIAAESVKSRLLKDLPYN 544
Query: 500 VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
V T T+ P++ DT+ P + L G S NE EA +V HV +L+
Sbjct: 545 VHETDDTKEPVVFWDTQGGDFPEKVDDEEFAKKESLLGE-SKSNEMEALVVARHVDNLVQ 603
Query: 557 AGVSPSAIAVQSPYVAQV----QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVR 612
AGV P IAV +PY Q+ Q LRE+ DL E+ ++D FQGRE +AV++S+VR
Sbjct: 604 AGVRPEDIAVITPYNGQLAVLSQMLREKYPDL------ELGSVDGFQGREKEAVVVSLVR 657
Query: 613 SNTLGAVGFLGDSRRMN 629
SN+ VGFLG+ RR+N
Sbjct: 658 SNSEHEVGFLGEKRRLN 674
>gi|57640113|ref|YP_182591.1| UvrD/REP family DNA helicase [Thermococcus kodakarensis KOD1]
gi|57158437|dbj|BAD84367.1| DNA helicase, UvrD/REP family [Thermococcus kodakarensis KOD1]
Length = 661
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 208/724 (28%), Positives = 327/724 (45%), Gaps = 151/724 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L +F + EL+ +ER AE+E + E+ + GR +++ +
Sbjct: 8 LSKFIAHLKELVEMERRAEIEAMRLEMRRLS------------------GREREKVGRAV 49
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
L LG LV + G R T +S GD+V + S+ S + G V
Sbjct: 50 LGLNGKVIGEELG-YFLVRY---GRDREIKTEISVGDLVVI----SKRDPLKSDLVGTVV 101
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
G+ T+++ T + K VRID A+ +T++R E L L+++G
Sbjct: 102 EKGKRFLTVAIE--------TVPEWALKGVRIDL---YANDITFKRWMENLDNLRESGRK 150
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
A+ G +E EE++ ++ K+ + SQ+ AIA L
Sbjct: 151 -------ALELYLGLREP----EESEPVEFQP------FDKSLNASQRGAIAKALGSG-D 192
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
++ GP GTGKT L E+I + V +G +VL TA +N AVDN+VE+L+D GL +VR+G+P
Sbjct: 193 FFLVHGPFGTGKTRTLVELIRQEVARGHKVLATAESNVAVDNIVERLADSGLKVVRIGHP 252
Query: 313 ARISPAVASKSL-------------------GEIVKSKLASFVA---EFERKKSDLRKDL 350
+R+S A+ +L GE +K K +F ++ R SD R+ L
Sbjct: 253 SRVSKALHETTLAYLITQHDLYAELRELRVIGENLKEKRDTFTKPAPKYRRGLSD-REIL 311
Query: 351 RQCLKD-----------DSLAAGIRQLLKQLGKTL---KKKEKETVKEVLSSAQVVLATN 396
R K +A IR + +Q+ KT +K E+ +E++ A VVL TN
Sbjct: 312 RLAEKGIGTRGVPARLIREMAEWIR-INQQVQKTFDDARKLEERIAREIIQEADVVLTTN 370
Query: 397 TGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALE 437
A ++ +D+ KR +LAGD QL P ILS KA
Sbjct: 371 ASAGLEVV-DYGEYDVAVIDEATQATIPSVLIPINRAKRFVLAGDHKQLPPTILSEKA-- 427
Query: 438 GGIGVSLLERAATLHEGVL------ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
E + TL EG++ + LT QYRMN+ + + S+E Y G + + +V +
Sbjct: 428 -------KELSKTLFEGLIERYPEKSEMLTVQYRMNERLMEFPSREFYDGKIKAHESVKN 480
Query: 492 HLLVDTPFVKPT----W----ITQCPLLLLDTRLPYGSLSLGCEEHLDLA--GTGSFYNE 541
L D +P W + L+ +DT E+ + G+ S N
Sbjct: 481 ITLADLGVSEPEFGNFWDEALKPENVLVFIDTS--------KREDRFERQRRGSDSRENP 532
Query: 542 GEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGR 601
EA++V V L+ GV P I V +PY Q R+ + + +EV T+D +QGR
Sbjct: 533 LEAKLVTETVEKLLEMGVKPDWIGVITPYDDQ----RDLISSMV-GEDIEVKTVDGYQGR 587
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
E + +++S VRSN G +GFL D RR+NV++TRA + + V DSST+ ++ R + +
Sbjct: 588 EKEIIVLSFVRSNRRGELGFLTDLRRLNVSLTRAKRKLIAVGDSSTLSNHPTYRRFIEFV 647
Query: 662 RYFG 665
R G
Sbjct: 648 RERG 651
>gi|346324459|gb|EGX94056.1| DNA-binding protein SMUBP-2 [Cordyceps militaris CM01]
Length = 1735
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 192/635 (30%), Positives = 291/635 (45%), Gaps = 96/635 (15%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG----NHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
I NL V S TGLGG ++ + LP L GD+V V D A
Sbjct: 1134 ITNLVVASQRTGLGGRTVLELGPDSATSTTGELPEHGLRTGDIVLV--ADQPAGSAKKKE 1191
Query: 128 QGFVHNLGEDGCTISV-------ALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNC 180
+ G G V AL+ + F GK+ + LAD +TY R
Sbjct: 1192 IQELEKKGARGVVTKVQKTSVFAALDDGKDEVAFG---GKAWMVK----LADEVTYRRMN 1244
Query: 181 EALMLLQKNGLHKRNPSIAAVVTLFGDK---EDVTWLEENDLADWSEVKLDGIMGKTFDD 237
+ LQK + + I + L +D++ EE +W T +D
Sbjct: 1245 LVMEKLQKMSEAEYSSFIQVLFGLSSPSPVPKDLSADEELSKIEW--------FDPTLND 1296
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQK AI L R + +I GPPGTGKT L E+I + ++ +RVLV P+N +VDN+VE
Sbjct: 1297 SQKDAIRFAL-ASREIALIHGPPGTGKTHTLIELILQLIKLKKRVLVCGPSNISVDNIVE 1355
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
+LS + I+R+G+PAR+ P+V + SL + ++ A + + R + D ++ + K
Sbjct: 1356 RLSPHKVPILRLGHPARLLPSVVNHSLDVLTQTSEAGAIVKDVRAEMDAKQASIKKTKSG 1415
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
I L++L K +++E++ V ++ ++VVLAT GA +R + FD+V
Sbjct: 1416 KERRQIYGDLRELRKEYRERERKCVSNLVGGSKVVLATLHGAGGHQLRS-EKFDVVIIDE 1474
Query: 414 ---------------GKRCILAGDQCQLAPVILSR--------------KALEG-GIGVS 443
+ + AGD QL P I S K ++G + +
Sbjct: 1475 ASQALEAQCWVPLLSANKAVCAGDHLQLPPTIKSSNSKAALKLKDGPEAKPIKGMTLETT 1534
Query: 444 LLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKP 502
L +R LH + LTTQYRM++ I + S E+Y L+++ V S LL + + +
Sbjct: 1535 LFDRLLALHGPSIKRMLTTQYRMHEKIMRFPSDELYESKLVAAEAVKSRLLKELEYKIDD 1594
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVH-HVFSLICAGVSP 561
T PL+ +DT+ G F E + V + L+ AG+
Sbjct: 1595 NEDTGEPLIFIDTQ------------------GGDFPERSEEDDVENPKKAKLVEAGLKA 1636
Query: 562 SAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
IAV +PY AQ+ L + P G+E+ ++D FQGRE +AVI+S+VRSNT G VGF
Sbjct: 1637 EDIAVVTPYNAQLAVLAPLKEKFP---GIELGSVDGFQGREKEAVIVSLVRSNTEGEVGF 1693
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLAR 656
LG+ RR+N +R AV C S H F A+
Sbjct: 1694 LGEKRRLNGMSSRG---EAVSCIS---LHYGFHAK 1722
>gi|319957167|ref|YP_004168430.1| DNA helicase [Nitratifractor salsuginis DSM 16511]
gi|319419571|gb|ADV46681.1| DNA helicase [Nitratifractor salsuginis DSM 16511]
Length = 733
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 202/701 (28%), Positives = 324/701 (46%), Gaps = 125/701 (17%)
Query: 15 EFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICN 74
++ + +L+ +ER+AE EE+ S + +E S GRA I
Sbjct: 75 DYIEEYRQLIELEREAERRSRIEEIKRF--------SGRELE---SFGRA-------ILG 116
Query: 75 LFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNL 134
L T L +HLV + G R T +S GD+V V SRG S + V +
Sbjct: 117 LRGRRAGT-LFDLHLVRY---GRDRRIETEISGGDIVLV----SRGEPLKSDLSATVMGV 168
Query: 135 GEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKR 194
G + ++ + P ++ + VR+D E+N E++ H
Sbjct: 169 GRNYIELAFS----QVPPKWA--LKEEVRLDLFVNDVTFKRMEKNLESMR-------HLP 215
Query: 195 NPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAI--ALGLNKKRP 252
+P + D+ LE + K++ + G ++ Q +A+ +LG+ +
Sbjct: 216 DP--------YRRLRDIV-LELEPCGEAPMAKIEEVEG--LNEPQLEALRRSLGMEE--- 261
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS-DVGLNIVRVGN 311
L +I GPPGTGKT L +I +G +L TA +N AVDN++EKL+ D L ++RVG+
Sbjct: 262 LFLIHGPPGTGKTTTLTRVIQAHASKGMHILATADSNVAVDNLLEKLAGDGDLRLIRVGH 321
Query: 312 PARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKD-----------LRQCLKDDSL 359
PARI ++ SL ++ ++ + E +R+ ++ LR +D L
Sbjct: 322 PARIDSSLERFSLMRQLTEAPEYQEIRELQRQAETAARERARYSKPTPARLRGMSRDRVL 381
Query: 360 -------------AAGIRQLLKQL---GKT------LKKKEKETVKEVLSSAQVVLATNT 397
A IR + + + KT L+ E T+ +L +A VVLATN+
Sbjct: 382 KLAKEGRSSRGVSAETIRSMARWIEEDSKTEEAFERLRSLESATISRLLEAADVVLATNS 441
Query: 398 GAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEG 438
+ + +FDL R +LAGD QL P +LS +
Sbjct: 442 MVGSDALEGM-SFDLAVVDEGSQQIEPSTLLPLLRAPRGVLAGDHRQLPPTVLSDLEI-- 498
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDT 497
+ SL ER + + V AT L QYRM++ I + ++ MY G+L++ +VA L V+
Sbjct: 499 -LKRSLFERLIS-RKLVPATMLRVQYRMHETIMDFPNRLMYDGALVADPSVARRTLPVEK 556
Query: 498 PFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA 557
P P P++ DT + EHL T S+ N EA ++ V L+
Sbjct: 557 PPEDPCLDPSFPVVFADTS------EMEASEHLPERST-SYENPTEAGHLLRWVTELVAC 609
Query: 558 GVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
G++P+ I + +PY+AQV+ LR L++ P+ VEV ++D FQGRE + ++IS VRSN
Sbjct: 610 GIAPAQIGIITPYLAQVKLLRRLLEEFPD---VEVKSVDGFQGREKEVILISFVRSNLAQ 666
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
+VGF+ D RR+NVA+TRA + ++ D ST+ N +L
Sbjct: 667 SVGFVSDPRRLNVAMTRARSKLLMIGDRSTLEPNEPFGKLF 707
>gi|14590762|ref|NP_142832.1| DNA-binding protein [Pyrococcus horikoshii OT3]
gi|3257320|dbj|BAA30003.1| 656aa long hypothetical DNA-binding protein [Pyrococcus horikoshii
OT3]
Length = 656
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 200/651 (30%), Positives = 311/651 (47%), Gaps = 111/651 (17%)
Query: 77 VVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
+++ + + G L F V+ G +R T +S GD+V + S+ S + G V G
Sbjct: 44 ILNLNGKIAGEELGYFLVKYGRNREIKTEISVGDLVVI----SKRDPLKSDLLGTVVEKG 99
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
+ I VALE T + + VRID A+ +T+ R E L ++K G KR
Sbjct: 100 K--RFIVVALE------TVPEWALRDVRIDL---YANDITFRRWLENLDRVKKAG--KRA 146
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
+L ++ + EV + K+ + SQ+KAIA GL + +
Sbjct: 147 LEF--------------YLGLDEPSQGEEVSFEP-FDKSLNSSQRKAIAKGLGSE-DFFL 190
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARI 315
I GP GTGKT L E+I + V++G +VL TA +N AVDN+VE+L+ G+ IVRVG+P+R+
Sbjct: 191 IHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLAKDGVKIVRVGHPSRV 250
Query: 316 SPAVASKSL----------GE-----IVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS 358
S + +L GE ++ LA + + R+ L + +K
Sbjct: 251 SRHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDAEIIKLAE 310
Query: 359 LAAGIR----QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAAD 401
GIR +L+K++ + +K K E+ ++++ A V+L TN+ AA
Sbjct: 311 RRRGIRGLSARLIKEMAEWIKLNRQVQKAFEDARKLEERIARDIIREADVILTTNSSAAL 370
Query: 402 PLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGV 442
++ D +D+ R ILAGD QL P ILS +A E
Sbjct: 371 EVVDATD-YDVAIIDEATQATIPSILIPLNKVDRFILAGDHKQLPPTILSLEAQE----- 424
Query: 443 SLLERAATLHEGVL------ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ TL EG++ + LT QYRMN+ I + SKE Y G +++ V + L D
Sbjct: 425 ----LSHTLFEGLIERYPWKSEMLTIQYRMNERIMEFPSKEFYDGRIVADERVKNITLGD 480
Query: 497 TPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI 555
V T I + L + + + L G+ S N EA+IV V L+
Sbjct: 481 LGIKVNATGIWRDILDPSNVLVFIDTCMLDNRFERQRRGSESRENPLEAKIVSKIVEKLL 540
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
+GV I V +PY Q R+ + ++PE VEV T+D +QGRE + +I+S VRSN
Sbjct: 541 ESGVKAEMIGVITPYDDQ----RDLISLNVPEE--VEVKTVDGYQGREKEVIILSFVRSN 594
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+G +GFL D RR+NV++TRA + + ++ DSST+ + RL+ H+R G
Sbjct: 595 KVGEIGFLKDLRRLNVSLTRAKRKLIMIGDSSTLSSHETYKRLIEHVREKG 645
>gi|261350062|ref|ZP_05975479.1| putative DNA helicase [Methanobrevibacter smithii DSM 2374]
gi|288860848|gb|EFC93146.1| putative DNA helicase [Methanobrevibacter smithii DSM 2374]
Length = 658
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 204/719 (28%), Positives = 330/719 (45%), Gaps = 147/719 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEEL-NAVPTPDENSDSSKPIEFLVSHGRAPQELCDT 71
+ ++ +++ +L+ ERDAE+E +E+ N P E S GRA ++
Sbjct: 1 MKKYIKQLIKLINYERDAEIELMTKEIKNLSPKKRE------------SLGRAINKV--- 45
Query: 72 ICNLFVVSTSTGLG---GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
LG G +V F G T +S GDMV + S G S +
Sbjct: 46 --------KGKYLGKQLGSQIVQF---GRSEKIETEISVGDMVLI----STGYPLRSDLT 90
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V G I VA E P ++ K VRID A+ +T+ R + LM L
Sbjct: 91 GTVVEKG--ARFIKVAFEK--SIPKWT--LKKKVRIDL---YANDVTFRRMEDNLMHLNT 141
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
G + S L++ D + + K + K+ ++SQK A+ +N
Sbjct: 142 KGKNALEYS----------------LKKRDPKENKKEKYIDFIDKSLNESQKNAVRNAVN 185
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS-DVGLNIV 307
+ +I GP GTGKT L E+I + V+Q +VLVTA +N+AVDN++++LS + L I
Sbjct: 186 TEN-FFLIHGPFGTGKTRTLVELIQQEVRQSNKVLVTAESNSAVDNILDRLSQNKKLKIT 244
Query: 308 RVGNPARISP-----AVASKSLGEIVKSKLASFVAEFER-------------------KK 343
R+G+P R+S ++A KS + K+ E+
Sbjct: 245 RLGHPQRVSKENIAYSLAYKSENHQLTCKINKNYKRIEQISETRDRFTKPTPQYRRGFSD 304
Query: 344 SDLRKDLRQ--------CLKDDSLAAGI--RQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
SD+ + + K +S+A + + + ++ +KK E + VK++++S+ ++L
Sbjct: 305 SDILYNASKGKGGRGISSSKMESMANWLLENEKISEIHYKIKKLENKIVKDIINSSDIIL 364
Query: 394 ATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRK 434
+TN+ AA I R F++V +R ILAGD QL P I+S+K
Sbjct: 365 STNSTAAIEEIVRT-KFNVVIVDEASQATIPSILIPLSKARRFILAGDHKQLPPTIISKK 423
Query: 435 A--LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS- 491
A LE + L+++ ++ L QYRMN + + + E Y G+L S S+V +
Sbjct: 424 AHFLEKTLFEELIKKYPNK-----SSLLNVQYRMNSFLMKFPNLEFYNGNLKSDSSVDNI 478
Query: 492 -----------HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540
L ++ K PLL +DT +L E+HL + S N
Sbjct: 479 NLDEIIDLEELSRLKESDVEKQLHNNLKPLLFIDT----SNLKNNEEKHL--KDSKSIIN 532
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQG 600
+ EA+I + G++P I + SPY QV ++ D +P +EV ++D FQG
Sbjct: 533 QSEADIATSIAKFYLGTGINPKDIGIISPYADQVNLIQ---DKIP----IEVKSVDGFQG 585
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
RE + +IIS VRSN +GFL D RR+NVAITRA + + V+ + +T+ N+ ++L++
Sbjct: 586 REKEIIIISTVRSNKNKDIGFLKDLRRLNVAITRAKRKLIVIGNKNTLKGNSTYSKLIK 644
>gi|170288736|ref|YP_001738974.1| DNA helicase [Thermotoga sp. RQ2]
gi|170176239|gb|ACB09291.1| DNA helicase [Thermotoga sp. RQ2]
Length = 650
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 192/641 (29%), Positives = 304/641 (47%), Gaps = 113/641 (17%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV F G + T + GD+V + S+G S G V GE T++V
Sbjct: 57 GYFLVRF---GRRKKIDTEIGVGDLVLI----SKGNPLKSDYTGTVVEKGERFITVAV-- 107
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
P++ KL K+VRID A +T+ R E LM L G A+ L
Sbjct: 108 ---DRLPSW-KL--KNVRIDL---FASDITFRRQIENLMTLSPEGKK-------ALEFLL 151
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
G ++ EE + + E ++SQ++A++L L +I GP GTGKT
Sbjct: 152 GKRKPEESFEE-EFTPFDE---------GLNESQREAVSLALGSS-DFFLIHGPFGTGKT 200
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E I + V +G+++LVTA +N AVDN+VE+L +++VR+G+P+R+S + +L
Sbjct: 201 RTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWG-KVSLVRIGHPSRVSSHLKESTLA 259
Query: 326 EIVKS--------KLASFVAEFERKKSDLRK---DLRQCLKDDSL---------AAGI-R 364
+++ K+ +A+ K+ K R+ L D + A G+ +
Sbjct: 260 HQIETSSEYEKVKKMKEELAKLIEKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSK 319
Query: 365 QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ +K++ + +K +KE+ ++ AQVVL+TN+ AA +I + FD
Sbjct: 320 EKIKEMAEWIKLNSQIQDIRDLIERKEEIIANRIVREAQVVLSTNSSAALEIISGI-VFD 378
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
+V GK+ +LAGD QL P ILS A + + +L E T +
Sbjct: 379 VVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKD--LSRTLFEELITRY 436
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD----TPFVKPTW-ITQ 507
++ L TQYRMN+ + ++ S+E Y G L ++ V + L D P W +
Sbjct: 437 PEK-SSLLDTQYRMNELLMAFPSEEFYDGKLKAAEEVRNITLFDLGVEIPNFGKFWDVVL 495
Query: 508 CP---LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
P L+ +DT+ ++ + S N EA+IV V L+ GV I
Sbjct: 496 SPKNVLVFIDTKNRSDRFERQRKD------SPSRENPLEAQIVKEVVEKLLSMGVKEDWI 549
Query: 565 AVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
+ +PY QV +RE ++ A VEV ++D FQGRE + +IIS VRSN G +GFL D
Sbjct: 550 GIITPYDDQVNLIRELIE-----AKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLED 604
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV++TRA + + DSST+ + R + ++ G
Sbjct: 605 LRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKG 645
>gi|417780507|ref|ZP_12428268.1| AAA domain protein [Leptospira weilii str. 2006001853]
gi|410779216|gb|EKR63833.1| AAA domain protein [Leptospira weilii str. 2006001853]
Length = 637
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 159/469 (33%), Positives = 238/469 (50%), Gaps = 65/469 (13%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G M ++SQ+KA A+ + II GPPGTGKT L EII++ V +G+R+LV+APT
Sbjct: 183 GRMTGNLNESQRKA-AIKAVLSEDVTIIHGPPGTGKTTTLTEIISQLVAEGKRILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLR 347
++A D +VE +S G+ ++R+G+PARIS A +L ++ ++E+ R ++
Sbjct: 242 HSACDLLVESVSTRGIPVLRLGHPARISDAALHATLDYKLFHHPDGKLLSEYRRDVIEIS 301
Query: 348 KDLRQCL-----KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
K ++ K+ + Q +K+L KT++ EK + ++SS VV++T +A
Sbjct: 302 KQAKKYKRNFGEKEKEERKNLFQEVKELKKTIRSMEKGLIDSLVSSHPVVVSTPVASARS 361
Query: 403 LI--RRLD--TFD--------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
++ RR D D L R ILAGD QL P + S K + +L
Sbjct: 362 VLEGRRFDFCVLDESSQGLEPAFWIPILKSDRVILAGDHKQLPPSLFSEK---NSLEFTL 418
Query: 445 LERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPT 503
E+AA L L TQYRM D I+S+ S E Y L S +P
Sbjct: 419 FEKAAERLETSGRVFLLDTQYRMKDEISSFPSMEFYSNRLNSGRP------------EPE 466
Query: 504 WITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHVFSLI 555
I+ P P+G+ + +D AGT S N EA++ V L+
Sbjct: 467 RISNFP-----ETFPFGN----ALQWIDTAGTDSEEVAVDDSLTNPFEADLQVRLCTLLL 517
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG---VEVATIDSFQGREADAVIISMVR 612
S I V SPY AQV+ + E+L + AG + V+TIDSFQGRE +++ VR
Sbjct: 518 ENNWSEEEITVLSPYRAQVRLISEKLRE----AGLTKIGVSTIDSFQGRENRCILLGFVR 573
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
SN+ G GFL +SRR+NV +TRA + + DSST+ + FL+RL+R +
Sbjct: 574 SNSEGRSGFLKESRRINVGMTRAKDLLLCIGDSSTLLEDPFLSRLIRFV 622
>gi|15642780|ref|NP_227821.1| DNA helicase [Thermotoga maritima MSB8]
gi|4980488|gb|AAD35099.1|AE001689_5 DNA helicase, putative [Thermotoga maritima MSB8]
Length = 650
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 191/641 (29%), Positives = 304/641 (47%), Gaps = 113/641 (17%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV F G + T + GD+V + S+G S G V GE T++V
Sbjct: 57 GYFLVRF---GRRKKIDTEIGVGDLVLI----SKGNPLKSDYTGTVVEKGERFITVAV-- 107
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
P++ KL K+VRID A +T+ R E LM L G A+ L
Sbjct: 108 ---DRLPSW-KL--KNVRIDL---FASDITFRRQIENLMTLSSEGKK-------ALEFLL 151
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
G ++ EE + + E ++SQ++A++L L +I GP GTGKT
Sbjct: 152 GKRKPEESFEE-EFTPFDE---------GLNESQREAVSLALGSS-DFFLIHGPFGTGKT 200
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E I + V +G+++LVTA +N AVDN+VE+L +++VR+G+P+R+S + +L
Sbjct: 201 RTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWG-KVSLVRIGHPSRVSSHLKESTLA 259
Query: 326 EIVKS--------KLASFVAEFERKKSDLRK---DLRQCLKDDSL---------AAGI-R 364
+++ K+ +A+ +K+ K R+ L D + A G+ +
Sbjct: 260 HQIETSSEYEKVKKMKEELAKLIKKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSK 319
Query: 365 QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ +K++ + +K +KE+ ++ AQVVL+TN+ AA ++ + FD
Sbjct: 320 EKIKEMAEWIKLNSQIQDIRDLIERKEEIIASRIVREAQVVLSTNSSAALEILSGI-VFD 378
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
+V GK+ +LAGD QL P ILS A + + +L E T +
Sbjct: 379 VVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKD--LSRTLFEELITRY 436
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD----TPFVKPTW-ITQ 507
++ L TQYRMN+ + + S+E Y G L ++ V + L D P W +
Sbjct: 437 PEK-SSLLDTQYRMNELLMEFPSEEFYDGKLKAAEKVRNITLFDLGVEIPNFGKFWDVVL 495
Query: 508 CP---LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
P L+ +DT+ ++ + S N EA+IV V L+ GV I
Sbjct: 496 SPKNVLVFIDTKNRSDRFERQRKD------SPSRENPLEAQIVKEVVEKLLSMGVKEDWI 549
Query: 565 AVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
+ +PY QV +RE ++ A VEV ++D FQGRE + +IIS VRSN G +GFL D
Sbjct: 550 GIITPYDDQVNLIRELIE-----AKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLED 604
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV++TRA + + DSST+ + R + ++ G
Sbjct: 605 LRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKG 645
>gi|303275724|ref|XP_003057156.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461508|gb|EEH58801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1100
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 226/463 (48%), Gaps = 73/463 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+A L +RPL +IQGPPGTGKT I+ QQ + +V+V AP+N AVD
Sbjct: 474 LNHSQVNAVASVL--RRPLSLIQGPPGTGKTVTSATIVYHLAQQNQGQVIVCAPSNVAVD 531
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VRV +R L + L VA + + L+Q
Sbjct: 532 QLAEKIEQTGLKVVRVAAKSR------EAVLSPVEHLTLHYQVAHLDSPEHAELAKLQQ- 584
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD-- 411
LKD+ + +L + + ++ T +E+L SA VV T GA DP RL F
Sbjct: 585 LKDE-----LGELSSNDERKYRALKRATEREILQSADVVCTTAVGAGDP---RLANFRFR 636
Query: 412 --------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
+ K+ ++ GD CQL PV+ +KA G+G SL ER L
Sbjct: 637 QVLMDESTQATEPECLIPLIMGAKQVVMVGDHCQLGPVVACKKAARAGLGQSLFERLILL 696
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCP 509
GV +L QYRM+ ++ + S Y G+L + A L+ V+ P+ KP+ P
Sbjct: 697 --GVQPIRLQVQYRMHPCLSEFPSNTFYEGALQNGVAAAERLMTHVNFPWPKPS----TP 750
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
++ S+ E + +GT S+ N EA V V + AGV+P A+ V +P
Sbjct: 751 MMFW---------SMTGAEEISASGT-SYLNRTEAVSVEKIVTHFLRAGVAPEALGVVTP 800
Query: 570 YVAQ----VQH------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAV 619
Y Q VQH LR++L + ++VA++DSFQGRE D +I+S VRSN +
Sbjct: 801 YEGQRAYVVQHMTRAGVLRQQLYN-----EIQVASVDSFQGREKDFIILSCVRSNEKAGI 855
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
GFL D RR+NVA+TRA + ++ + + LL+H R
Sbjct: 856 GFLNDPRRLNVAMTRARSGLVILGNPKVLSRQPLFHDLLQHFR 898
>gi|418045943|ref|ZP_12684037.1| DNA helicase, partial [Thermotoga maritima MSB8]
gi|351675496|gb|EHA58656.1| DNA helicase, partial [Thermotoga maritima MSB8]
Length = 642
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 191/630 (30%), Positives = 301/630 (47%), Gaps = 114/630 (18%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV F G + T + GD+V + S+G S G V GE T++V
Sbjct: 57 GYFLVRF---GRRKKIDTEIGVGDLVLI----SKGNPLKSDYTGTVVEKGERFITVAV-- 107
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
P++ KL K+VRID A +T+ R E LM L G A+ L
Sbjct: 108 ---DRLPSW-KL--KNVRIDL---FASDITFRRQIENLMTLSSEGKK-------ALEFLL 151
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
G ++ EE + + E ++SQ++A++L L +I GP GTGKT
Sbjct: 152 GKRKPEESFEE-EFTPFDE---------GLNESQREAVSLALGSS-DFFLIHGPFGTGKT 200
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E I + V +G+++LVTA +N AVDN+VE+L +++VR+G+P+R+S + +L
Sbjct: 201 RTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWG-KVSLVRIGHPSRVSSHLKESTLA 259
Query: 326 EIVKS--------KLASFVAEFERKKSDLRK---DLRQCLKDDSL---------AAGI-R 364
+++ K+ +A+ +K+ K R+ L D + A G+ +
Sbjct: 260 HQIETSSEYEKVKKMKEELAKLIKKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSK 319
Query: 365 QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ +K++ + +K +KE+ ++ AQVVL+TN+ AA ++ + FD
Sbjct: 320 EKIKEMAEWIKLNSQIQDIRDLIERKEEIIASRIVREAQVVLSTNSSAALEILSGI-VFD 378
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
+V GK+ +LAGD QL P ILS A + + +L E T +
Sbjct: 379 VVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKD--LSRTLFEELITRY 436
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD----TPFVKPTW-ITQ 507
++ L TQYRMN+ + + S+E Y G L ++ V + L D P W +
Sbjct: 437 PEK-SSLLDTQYRMNELLMEFPSEEFYDGKLKAAEKVRNITLFDLGVEIPNFGKFWDVVL 495
Query: 508 CP---LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
P L+ +DT+ ++ + S N EA+IV V L+ GV I
Sbjct: 496 SPKNVLVFIDTKNRSDRFERQRKD------SPSRENPLEAQIVKEVVEKLLSMGVKEDWI 549
Query: 565 AVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
+ +PY QV +RE ++ A VEV ++D FQGRE + +IIS VRSN G +GFL D
Sbjct: 550 GIITPYDDQVNLIRELIE-----AKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLED 604
Query: 625 SRRMNVAITRACKHVAVVCDSSTI-CHNTF 653
RR+NV++TRA + + DSST+ H T+
Sbjct: 605 LRRLNVSLTRAKRKLIATGDSSTLSVHPTY 634
>gi|281412067|ref|YP_003346146.1| DNA helicase [Thermotoga naphthophila RKU-10]
gi|281373170|gb|ADA66732.1| DNA helicase [Thermotoga naphthophila RKU-10]
Length = 650
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 191/641 (29%), Positives = 305/641 (47%), Gaps = 113/641 (17%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV F G + T + GD+V + S+G S G V GE T++V
Sbjct: 57 GYFLVRF---GRRKKIDTEIGVGDLVLI----SKGNPLKSDYTGTVVEKGERFITVAV-- 107
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
P++ KL K+VRID A +T+ R E LM L G A+ L
Sbjct: 108 ---DRLPSW-KL--KNVRIDL---FASDITFRRQIENLMTLSPEGKK-------ALEFLL 151
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
G ++ EE + + E ++SQ++A++L L +I GP GTGKT
Sbjct: 152 GKRKPEESFEE-EFTPFDE---------GLNESQREAVSLALGSS-DFFLIHGPFGTGKT 200
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E I + V +G+++LVTA +N AVDN+VE+L +++VR+G+P+R+S + +L
Sbjct: 201 RTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWG-KVSLVRIGHPSRVSSHLKESTLA 259
Query: 326 EIVKS--------KLASFVAEFERKKSDLRK---DLRQCLKDDSL---------AAGI-R 364
+++ K+ +A+ K+ K R+ L D + A G+ +
Sbjct: 260 HQIETSSEYEKVKKMKEELAKLIEKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSK 319
Query: 365 QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ +K++ + +K +KE+ ++ AQVVL+TN+ AA +I + FD
Sbjct: 320 EKIKEMAEWIKLNSQIQDIRDLIERKEEIIANRIVREAQVVLSTNSSAALEIISGI-VFD 378
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
+V GK+ +LAGD QL P ILS A + + +L E T +
Sbjct: 379 VVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKD--LSRTLFEELITRY 436
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD----TPFVKPTW-ITQ 507
++ L TQYRMN+ + ++ S+E Y G L ++ V + L D P W +
Sbjct: 437 PEK-SSLLDTQYRMNELLMAFPSEEFYDGKLKAAEEVRNITLFDLGVEIPNFGKFWDVVL 495
Query: 508 CP---LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
P L+ +DT+ ++ + S N EA+IV V L+ GV + I
Sbjct: 496 SPKNVLVFIDTKNRSDRFERQRKD------SPSRENPLEAQIVKEVVEKLLSMGVKENWI 549
Query: 565 AVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
+ +PY QV +RE +++ VEV ++D FQGRE + +IIS VRSN G +GFL D
Sbjct: 550 GIITPYDDQVNLIRELIEE-----KVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLED 604
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV++TRA + + DSST+ + R + ++ G
Sbjct: 605 LRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKG 645
>gi|149193893|ref|ZP_01870991.1| DNA helicase, UvrD/REP family protein [Caminibacter mediatlanticus
TB-2]
gi|149135846|gb|EDM24324.1| DNA helicase, UvrD/REP family protein [Caminibacter mediatlanticus
TB-2]
Length = 641
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 192/716 (26%), Positives = 324/716 (45%), Gaps = 148/716 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++E+ EL+ ER AE EF E+ + + GRA L
Sbjct: 8 IEEYRSYFKELIEKERVAEKEFHLNEIKRLSGVERQK-----------RGRAILGLRMRY 56
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
F + ++R N+ +P + GD+V + SRG + V
Sbjct: 57 VGEF----------LDFKIYRFNRNN-MPEHQIKVGDIVLI----SRGEPLKFNQEATVS 101
Query: 133 NLGEDGCTISVALESRHGDPTF-SKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNG- 190
+G++ +E +P F SKL+ R+ + +T++R +AL L+ +
Sbjct: 102 AVGKN------FIEVYSKEPIFRSKLY-------RLDLFVNDITFKRMLKALDNLENSEF 148
Query: 191 -----LHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIAL 245
L K+NP + V EVK D + +DSQ KA++
Sbjct: 149 DVDIILGKKNPKLEKV----------------------EVKSDKL-----NDSQNKALSY 181
Query: 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN 305
+N + +I GPPGTGKT L E+I + + G+++LV A +N AVDN++EKLS+ N
Sbjct: 182 SINSE--TFLIHGPPGTGKTTTLAEVIKKHI--GKKILVCADSNVAVDNVLEKLSE--YN 235
Query: 306 IVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLRK-----------DLRQC 353
+VR+G+PA+I + SL +I + K V + +K DL+ R+
Sbjct: 236 VVRIGHPAKIESNLMKYSLDVKIRRDKRYKEVEKLIKKIDDLKYLQEKRTKKPTPSRRRG 295
Query: 354 LKDDSL---------AAGIR-QLLKQLGKTLKKKEK-------------ETVKEVLSSAQ 390
+ D+ + G++ + +K++ + LK + K E +KE+L+SA
Sbjct: 296 MSDEEILDLAKQGKGKRGVKVEWIKEMAEWLKIQRKISKLYDEKNKITEEIMKEILNSAD 355
Query: 391 VVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVIL 431
+V ATN+GA + FD+V K+ I AGD QL P IL
Sbjct: 356 IVFATNSGAGSEFLEE-RKFDVVFLDEAAQSMEPSTLIPLIKAKQSIFAGDDKQLPPTIL 414
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
S + + VS+ ER ++ + + L QYRMN+ I ++ S E Y + + + +
Sbjct: 415 SN---DERLKVSMFERFHKIY-PIASHTLEVQYRMNEKINNFPSCEFYECKVKTYEKIKN 470
Query: 492 HLLVDTPFVK-PTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHH 550
L D + ++ P++ DTR + EE + S YN EAE V+
Sbjct: 471 ITLKDLGVNEDESFGGYTPIVFFDTRGKF------LEE--TKKDSPSKYNPKEAEFVLSL 522
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
LI I V +PY +++++ +++ + G+E+ ++D FQGRE + +I+S+
Sbjct: 523 CKKLIENNAKQEFIGVITPYKDHEEYIKKLMEN-EKIEGIEIKSVDGFQGREKEIIIVSL 581
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGR 666
VR+N +GFL D RR+NVAITR + + +V D+ T+ N L+ +++ G+
Sbjct: 582 VRANEKENIGFLDDIRRLNVAITRPKRKLIIVGDAKTLSTNQTYQHLIDYVKKEGK 637
>gi|212225034|ref|YP_002308270.1| DNA helicase [Thermococcus onnurineus NA1]
gi|212009991|gb|ACJ17373.1| DNA helicase [Thermococcus onnurineus NA1]
Length = 660
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 216/724 (29%), Positives = 329/724 (45%), Gaps = 149/724 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L++F + L+ ER AE+E + E+ + GR +++ I
Sbjct: 3 LEKFINHLKVLVEYERKAEIEAMRAEMKRL------------------SGREREKVGRAI 44
Query: 73 CNLFVVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFV 131
L + + G L F V+ G R T + GD+V + S+ S + G V
Sbjct: 45 LGL-----NGKIIGEELGYFLVKYGRDREIKTEIGVGDLVVI----SKRDPLKSDLVGTV 95
Query: 132 HNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGL 191
G+ I+VALE T + K +R+D A+ +T++R E L L + G
Sbjct: 96 VEKGKR--FITVALE------TVPEWALKGIRLDL---YANDITFKRWIENLEHLHEGG- 143
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
KR +L D + V+ D I K+ + SQ++AI+ L
Sbjct: 144 -KRALEF--------------YLGLRDPEESEPVEFDPI-DKSLNASQRRAISQALGSPN 187
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+I GP GTGKT L E+I + V++G +VL TA +N AVDN+VE+L++ GL IVR+G+
Sbjct: 188 -FFLIHGPFGTGKTRTLAELIRQEVERGHKVLATAESNVAVDNLVERLAESGLKIVRIGH 246
Query: 312 PARISPAVASKSLGEIV-KSKLASFVAEFE-------RKKSDLRKDL---RQCLKDDSLA 360
P+R+S + +L ++ K L S + E K+ K L R+ L D +
Sbjct: 247 PSRVSKHLHETTLAYLMTKHDLYSELRELRVTAQNLAEKRDTFTKPLPKYRRGLTDIEIL 306
Query: 361 A------GIR----QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNT 397
A G R +L++++ +K K E+ +E++ A VVL TN
Sbjct: 307 ALSRRRRGTRGVPAKLIREMANWIKLNKLVQKAFDDARKLEERIAREIIQEADVVLTTNA 366
Query: 398 GAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEG 438
A +I D +D+ KR +LAGD QL P ILS KA E
Sbjct: 367 SAGLEVIGYAD-YDVAIIDEATQATIPSVLIPINRAKRFVLAGDHRQLPPTILSEKARE- 424
Query: 439 GIGVSLLERAATLHEGVL------ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH 492
L R TL EG++ + LT QYRMN+ + + ++E Y G + ++ V
Sbjct: 425 ------LSR--TLFEGLIERYPEDSAMLTVQYRMNERLMEFPNREFYDGKIKAAPGVKCI 476
Query: 493 LLVDTPFVKPTWITQCPLL--LLDTRLPYGS--LSLGCEEHLD-----LAGTGSFYNEGE 543
L D +CP D L G+ + + +H + G+ S N E
Sbjct: 477 TLTDLGI-------KCPNFGEPWDEILKAGNVLVFIDTSKHPEKWERQRRGSESRENPLE 529
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-PEAAGVEVATIDSFQGRE 602
A IV V L+ GV P I V +PY Q R+ + L PE +EV T+D +QGRE
Sbjct: 530 ARIVAETVEKLLEMGVKPEWIGVITPYDDQ----RDLISSLVPEE--IEVRTVDGYQGRE 583
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+ +I+S VRSN G VGFL D RR+NV++TRA + + VV DS T+ ++ R + ++
Sbjct: 584 KEVIILSFVRSNERGEVGFLKDLRRLNVSLTRAKRKLIVVGDSETLSVHSTYKRFIEFVK 643
Query: 663 YFGR 666
GR
Sbjct: 644 AEGR 647
>gi|149247810|ref|XP_001528299.1| hypothetical protein LELG_00819 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448253|gb|EDK42641.1| hypothetical protein LELG_00819 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 741
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 235/459 (51%), Gaps = 63/459 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+DSQK+AI +NK + II GPPGTGKT + E+I + GE+VLV P+N +VD
Sbjct: 248 LNDSQKRAIDFAINKSN-ISIIFGPPGTGKTMTIIELIRQLTDCGEKVLVCGPSNISVDT 306
Query: 295 MVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
++E+L D +++R+G+PAR+ P SL I KS +++ E +D++ L +
Sbjct: 307 ILERLGDKYKAGDLIRIGHPARLLPVNLQHSLDVISKSYGRDVISDVE---NDIQTTLGK 363
Query: 353 CLKDDSLAAG--IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-T 409
K A + Q LK L K L ++E++ V+E+L +A+V+LAT GA ++R +
Sbjct: 364 IKKTKRYAERKVLYQELKLLKKELIQRERKVVQELLQNAKVILATLHGAGSYELKRSNIK 423
Query: 410 FDLV----------------------GKRCILAGDQCQLAPVIL------SRKALEGG-- 439
FD + KR ++AGD QL P I+ SR +
Sbjct: 424 FDTIIIDEVSQSLEPQCWIPLLINDNFKRLVIAGDNMQLPPTIMLSGSNSSRSKNKNQDK 483
Query: 440 ----------IGVSLLERAATLHEG-VLATKLTTQYRMNDAIASWASKEMYGGSLISSST 488
+ +L +R +G T L QYRMND+I + S ++Y L S+
Sbjct: 484 SNDCSNKTSILETTLFDRLVKKLDGEKFKTLLDVQYRMNDSIMKFPSMQLYKDKLKSADL 543
Query: 489 VASHLLVDTPFVKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAE 545
V L+D V+ T + DT+ P L + G S YNE E
Sbjct: 544 VKDISLLDLSGVQKNDDTVLQCIWYDTQGGEFPEQILE-------SVKGGDSKYNEMELL 596
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
IV H+ L+ +GV P+ I V +PY AQV L+++ P++ +E++T+D FQGRE +
Sbjct: 597 IVKAHIKKLLKSGVQPTDIGVIAPYAAQVLLLKKQFG--PDSQ-IEISTVDGFQGREKEV 653
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
+I+++VRSN VGFL + RR+NVAITR + + V+ D
Sbjct: 654 IILTLVRSNDDNEVGFLSEERRLNVAITRPKRQLCVIGD 692
>gi|321261778|ref|XP_003195608.1| DNA helicase [Cryptococcus gattii WM276]
gi|317462082|gb|ADV23821.1| DNA helicase, putative [Cryptococcus gattii WM276]
Length = 748
Score = 202 bits (513), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 221/768 (28%), Positives = 349/768 (45%), Gaps = 156/768 (20%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
F R +LL +ER AE E T+ LN+ +P L G A + L
Sbjct: 19 FLSRHRQLLELERKAEEEQTRL-LNSKCSPS----------LLEQRGLA-------LNGL 60
Query: 76 FVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLSPGDMVCVRVCDSRGACAT------- 124
V S GLGG L+ L R H LPP T GD V + S +
Sbjct: 61 GVSGISIGLGGKSLIELHRPLAYHTSPALPPNTFRSGDPVRIEAHVSSASTKNKGKRKES 120
Query: 125 ---SCIQGFVHNLGEDGCTISVALESRHGD-PTFSKLF--GKSVRIDRIQGLADTLTYER 178
S ++G V+ +G + ++V ES+ D P +L SV DR++ TLT+
Sbjct: 121 EDESAVEGVVYRVGPEKVVVAVN-ESKEIDLPERLRLLKLANSVTFDRME---RTLTH-- 174
Query: 179 NCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLE----ENDLADWSEVKLDGIM--- 231
E L+L + ++ V L G K+ TW E +N++ ++ D M
Sbjct: 175 -LECLVLPSGGTPSPPSFNMPLVQVLLG-KQLPTWKETIPPQNNVEALGQLSSDEDMKWF 232
Query: 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--------ERVL 283
G+ +DSQK++I L K + I GPPGTGKT L E+I + + + R+L
Sbjct: 233 GQHLNDSQKESIKFCL-KANEVACIHGPPGTGKTHTLVELIFQLLSRTASPNTTLPPRIL 291
Query: 284 VTAPTNAAVDNMVEKLSDV-----------GLNIVRVGNPARISPAVASKSL-------- 324
+T P+N A+DN++ +L + + +R+G+P R+ + ++L
Sbjct: 292 ITTPSNLALDNLLIRLHILTQQPPYNSLLSSNSFLRMGHPTRVHRDLVKETLDWKAANSD 351
Query: 325 -GEIVK---SKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKE 380
GE++K ++ + +K+ + + +K ++ ++L K +++E +
Sbjct: 352 QGELLKDVGKEMQGHLNALGKKRGE-----KGAVKGKERGKKWEEV-RELRKEYRRRESK 405
Query: 381 TVKEVLSSAQVVLATNTGAADPLIRRLDTFD-------------------LVGKRCILAG 421
V+ V++ AQ+VLAT A + + TFD L K+ ILAG
Sbjct: 406 VVETVVNGAQIVLATCHSAGSRQLNNM-TFDVCIIDEATQAVEAVCWVPILKSKKLILAG 464
Query: 422 DQCQLAPVILSR------KALEGGIG-----------------VSLLERAATLHEGVLAT 458
D QL P I+S+ K L+G I +L ER L+ +
Sbjct: 465 DPQQLPPTIMSKENAPPLKDLQGAIDQIKLGDSLSIKPPRTLETTLFERLEKLYGLGIKR 524
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV------------KPTWIT 506
L QYRMN+ IA + S+ +Y +LIS ++VA L++ P V +PT
Sbjct: 525 ILQVQYRMNEHIAVFPSETLYESALISDASVAKRTLLELPSVNDKTSEDVKDDLEPT--- 581
Query: 507 QCPLLLLDTR-LPYGSLSLGCEEHLDLA-GTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
++ DT + + G E + + G GS NE EAEIV LI G+ P I
Sbjct: 582 ---VVFFDTADCEFYERTEGDGEAIKSSIGEGSKSNENEAEIVARWARKLISLGIPPIEI 638
Query: 565 AVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
+ +PY AQV + L ++ PE + + +ID QG+E +A+I+S+VRSN G VGFLG
Sbjct: 639 GIVTPYQAQVTFISSLLHEEYPE---MTIGSIDGLQGQEREAIILSLVRSNPSGEVGFLG 695
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHA 670
+ RR+NVA+TRA + + VV DS T+ T +L + + + V+ A
Sbjct: 696 EYRRLNVAMTRAKRQLCVVGDSKTVSKGTKYLKKWMDWLEAEADVRWA 743
>gi|332159100|ref|YP_004424379.1| dna2-nam7 helicase family protein [Pyrococcus sp. NA2]
gi|331034563|gb|AEC52375.1| dna2-nam7 helicase family protein [Pyrococcus sp. NA2]
Length = 655
Score = 201 bits (512), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 207/642 (32%), Positives = 306/642 (47%), Gaps = 115/642 (17%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV + G R T +S GD+V + SR S + G V G+ I VAL
Sbjct: 57 GYFLVKY---GREREIKTEISVGDLVVI----SRRDPLKSDLVGTVVEKGK--RFIVVAL 107
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
E T + + VRID A+ +T++R E L ++K G KR A+
Sbjct: 108 E------TVPEWALRGVRIDL---YANDITFKRWLENLDRVKKAG--KR-----ALEFYL 151
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
G +EE ++ EVK + K + SQ++AI L +I GP GTGKT
Sbjct: 152 G-------MEEPSRSE--EVKFEP-FDKNLNPSQRRAIGKALGSD-DFFLIHGPFGTGKT 200
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E+I + V++G +VL TA +N AVDN+VE+L D GL IVRVG+P+R+S + +L
Sbjct: 201 RTLVELIRQEVKRGNKVLATAESNVAVDNLVERLVDGGLKIVRVGHPSRVSRHLHETTLA 260
Query: 326 -EIVKSKLASFVAEFE-------RKKSDLRKDL---RQCLKDDSL---------AAGIR- 364
+I K +L + E K+ K L R+ L D + A G+
Sbjct: 261 YQITKHELYGELRELRVIGQSLAEKRDTYTKPLPKYRRGLSDSEILRLAERGRGARGLSA 320
Query: 365 QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+L++++ + +K K E+ +E++ A VVL TN+ AA ++ D +D
Sbjct: 321 RLIREMAEWIKLNRQVQKAFEDARKLEERIAREIIREADVVLTTNSSAALEVVDAGD-YD 379
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
+ +R ILAGD QL P ILS +A E L R TL
Sbjct: 380 VAIIDEATQATIPSILIPLNKVERFILAGDHKQLPPTILSLEAQE-------LSR--TLF 430
Query: 453 EGVL------ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWIT 506
EG++ + LT QYRMN+ I + SKE YGG + + +V L D + +
Sbjct: 431 EGLIERYPWKSEMLTVQYRMNERIMEFPSKEFYGGRIAADESVKDITLRDLGILVDSSDM 490
Query: 507 QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG--EAEIVVHHVFSLICAGVSPSAI 564
+L + L + S E + GS E EA+IV V L+ GV I
Sbjct: 491 WAEILKPENVLVFIDTS-KAENKWERQRRGSESRENPLEAKIVSEIVERLLRIGVKKEWI 549
Query: 565 AVQSPYVAQVQHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
+ +PY Q R+ + ++PE VEV T+D +QGRE + +I+S VRSN G +GFL
Sbjct: 550 GIITPYDDQ----RDLISLNVPE--DVEVKTVDGYQGREKEVIILSFVRSNKAGEIGFLK 603
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
D RR+NV++TRA + + +V DSST+ + RL+ I+ G
Sbjct: 604 DLRRLNVSLTRARRKLIIVGDSSTLSSHETYRRLIEFIKEKG 645
>gi|374106511|gb|AEY95420.1| FACL098Cp [Ashbya gossypii FDAG1]
Length = 657
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 163/479 (34%), Positives = 242/479 (50%), Gaps = 65/479 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+ SQ+ A+A L + + II GPPGTGKT L E+I + +G RVLV P+N AVD
Sbjct: 187 LNASQRDAVAFALRNE--ISIIHGPPGTGKTHTLVELIRQLYDRGHRVLVCGPSNIAVDT 244
Query: 295 MVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVKS-KLASFVAEFERKKSDLRKDLR 351
++E+LS G ++RVG+PAR+ P + SL + K S V + R+ + D+R
Sbjct: 245 VLERLSRPIPGAELLRVGHPARLLPGNLAHSLDILAKEGDGGSIVRDIGREINQRIADVR 304
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA--------DPL 403
+ +K Q ++ L K LK++E+ V E++ +A+VV+ T G++ D
Sbjct: 305 K-IKSSRDRKKAWQEVRDLRKELKQRERNVVSELILAARVVVCTLHGSSAYSLCHMYDKC 363
Query: 404 IRRLDT--FDLVGK-------------------RCILAGDQCQLAPVILS------RKAL 436
R DT D V + + ++AGD QL P + + R+ L
Sbjct: 364 ARLFDTVIIDEVSQSLEPQCWIPLISHYQSNISKLVIAGDNKQLPPTVKTEDDAHVRQVL 423
Query: 437 EGGIGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV 495
I LER H G KL QYRMN+ I ++AS+ +Y G L + VAS L
Sbjct: 424 STTI-FDKLER----HYGDQFKKLLDVQYRMNERIMAFASESLYAGKLKAWQGVASQTLA 478
Query: 496 DTPFVKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVF 552
D P V + T PL+ DT+ P + G A S +NE EA +V+HH+
Sbjct: 479 DLPGVDESDDTSAPLVWYDTQGDDFPEAEEAAGGP-----ALMASKFNENEAYLVLHHIS 533
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVR 612
L V AI V SPY AQV L++ + + VE++++D FQGRE + +++S+VR
Sbjct: 534 QLRACNVPQEAIGVISPYNAQVALLKKTIHG--QHPLVEISSVDGFQGREKECIVLSLVR 591
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFLARLLR------HIRY 663
SN VGFL D RR+NVA+TRA + + V+ + T+ + FL +R IRY
Sbjct: 592 SNDSFDVGFLRDERRLNVAMTRARRQLCVIGNMETLERSQSQFLRSWVRWSEEHSEIRY 650
>gi|435853073|ref|YP_007314392.1| DNA helicase, putative [Halobacteroides halobius DSM 5150]
gi|433669484|gb|AGB40299.1| DNA helicase, putative [Halobacteroides halobius DSM 5150]
Length = 750
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 189/649 (29%), Positives = 298/649 (45%), Gaps = 105/649 (16%)
Query: 83 GLGGMHLVLF-RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTI 141
G GG L+ F R + +LP T +S GD+V + A + G V + + ++
Sbjct: 136 GFGGRELIKFIRQKKGEKLPDTEISVGDLV---MLSKNRPLADNNPTGTV--VEKTNYSL 190
Query: 142 SVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAV 201
+V +S +P L+ K +R+D + +T++R +AL L+ S
Sbjct: 191 TVVFDS---NPA-GFLYDKGLRLDL---YVNDITFQRMLDALGNLE---------SATGR 234
Query: 202 VTLFGDK----EDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQ 257
+ + DK DV + N L K+D K +DSQ++A+ L K ++
Sbjct: 235 LKVLRDKLLGLADVEF---NQLP-----KID-YYNKDLNDSQRQAVRSALAAK-DFFLVH 284
Query: 258 GPPGTGKTGLLKEIIARAVQQGER-VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARIS 316
GPPGTGKT EI+ + + GE+ +L TA +N AVDN+VE+L G+ ++RVG+PAR++
Sbjct: 285 GPPGTGKTMTSIEILQQ--EAGEKNILATADSNTAVDNLVERLVARGVKVLRVGHPARVN 342
Query: 317 PAVASKSLGEIV----KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAGIRQL 366
V +L I+ K K AS + + K S + D QC+ + IR L
Sbjct: 343 SLVREYTLDHIIQEHPKYKEASQLRDKAYKLSKQQDDNPQCIFPSGENRRGFSNQQIRDL 402
Query: 367 -----------------------------LKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
+ QL +++ E E V E++ A+VV TN+
Sbjct: 403 GSKNINGRPRGLSPKKIKGMAKWLELQDEINQLFSQIERLEDEAVTELIEEAEVVCTTNS 462
Query: 398 GAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEG 438
A ++ FDL+ + IL GD QL P IL+ +A
Sbjct: 463 TAGSEVLAE-QNFDLLLIDEATQSTEPAALIPVVKSNKVILVGDHKQLPPTILNEEAARK 521
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
G+ SL ER +H + L QYRMN AI +++S + Y L+++ V + D
Sbjct: 522 GLSKSLFERLLEVHGAKIKEILNVQYRMNQAIMNFSSSQFYDQQLVAAKKVKEWNITDLN 581
Query: 499 FVKPTWITQCP--LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
P + L + D + + + E+ T S N EAE+V + +
Sbjct: 582 IQLPKGNSPAEKVLKIKDAVVFLDTSGMSAPEYTKGDST-SLQNRIEAELVSEIINQTVN 640
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
+ S +AV +PY QV +++ L + VEV T+D FQGRE + VI+S+VRSN
Sbjct: 641 TKIDLSEVAVITPYKDQVDLIKQ----LIKLEEVEVNTVDGFQGREKELVILSLVRSNQQ 696
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+GFL D RR+NV++TRA K + ++ DSSTI + L+ +I G
Sbjct: 697 DNIGFLRDIRRLNVSLTRAKKKLIILGDSSTITSHETYQSLVEYIEKNG 745
>gi|58271134|ref|XP_572723.1| DNA helicase [Cryptococcus neoformans var. neoformans JEC21]
gi|57228982|gb|AAW45416.1| DNA helicase, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 748
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 224/786 (28%), Positives = 353/786 (44%), Gaps = 166/786 (21%)
Query: 3 LERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHG 62
L+ T + + F R +LL +ER AE E T+ LN+ +P L G
Sbjct: 6 LQPKPTPDASVQSFLNRHKQLLELERKAEEEQTRL-LNSKCSPS----------LLEQRG 54
Query: 63 RAPQELCDTICNLFVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLSPGDMVCVRV--- 115
A + L V S GLGG L+ L R H LPP T PGD V +
Sbjct: 55 LA-------LNGLGVSGISIGLGGKSLIELHRPLAYHTSPALPPHTFRPGDPVRIEAHVA 107
Query: 116 ---CDSRGACATS----CIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQ 168
S+G S ++G V+ +G + ++V SK R+ R+
Sbjct: 108 TTSGKSKGKKRESEDEGAVEGVVYRVGPEKVVVAV---------NESKEIDLPERL-RLL 157
Query: 169 GLADTLTYERNCEALMLLQK----NGLHKRNPS--IAAVVTLFGDKEDVTWLE----END 218
LA+++T++R + L L++ +G PS + V L G K+ TW E +N+
Sbjct: 158 KLANSVTFDRMEKTLAHLERLVLPSGGTPSPPSFNMPLVQALLG-KQLPTWKETIPPQNN 216
Query: 219 LADWSEVKLDGIM---GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA 275
+ ++ D M G+ +DSQK++I L K + I GPPGTGKT L E+I +
Sbjct: 217 IEPLGQLSSDEDMKWFGQHLNDSQKESIKFCL-KANEVACIHGPPGTGKTHTLVELIFQL 275
Query: 276 VQQG--------ERVLVTAPTNAAVDNMVEKLSDVGL-----------NIVRVGNPARIS 316
+ + R+L+T P+N A+DN++ +L + + +R+G+P R+
Sbjct: 276 LSRPAAPNTTLPPRILITTPSNLALDNLLIRLHILAQQPPYSSLLPRNSFLRMGHPTRVH 335
Query: 317 PAVASKSL---------GEIVK---SKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIR 364
+ ++L GE++K ++ + +K+ + + +K
Sbjct: 336 RDLVKETLDWKAANGDQGELLKDVGKEMQGHLDALGKKRGE-----KGAVKGKERGKKWG 390
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT--FD----------- 411
++ ++L K +++E + VK V++ AQ+VLAT A R+L+ FD
Sbjct: 391 EV-RELRKEYRQREGKVVKTVVNGAQIVLATCHSAGS---RQLNNMIFDVCIIDEATQAV 446
Query: 412 --------LVGKRCILAGDQCQLAPVILSR------KALEGGIG---------------- 441
L K+ ILAGD QL P I+S+ K L+ I
Sbjct: 447 EAVCWVPILKSKKLILAGDPQQLPPTIMSKENAPPLKDLQEAIDQIKLGDSPSLKSPRTL 506
Query: 442 -VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
+L ER L+ + L QYRMN+ IA + S+ +Y +LIS ++VA L++ P V
Sbjct: 507 ETTLFERLEKLYGPGIKRVLQVQYRMNEHIAVFPSETLYESALISDASVAKRTLLELPSV 566
Query: 501 K------------PTWITQCPLLLLDTR--LPYGSLSLGCEEHLDLAGTGSFYNEGEAEI 546
K PT ++ DT Y E G GS NE EAEI
Sbjct: 567 KDKTSEDVKDDLEPT------VVFFDTADCEFYERTEGDGEATKSSIGEGSKSNENEAEI 620
Query: 547 VVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADA 605
V LI G+ P I + +PY AQV + L ++ PE + + ++D QG+E +A
Sbjct: 621 VARWARKLISLGIPPIEIGIVTPYQAQVTLISSLLHEEYPE---MTIGSVDGLQGQEREA 677
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYF 664
+I+S+VRSN G VGFLG+ RR+NVA+TRA + + VV DS T+ T +L + + +
Sbjct: 678 IILSLVRSNPSGEVGFLGEYRRLNVAMTRAKRQLCVVGDSKTVSKGTKYLKKWMDWLEAE 737
Query: 665 GRVKHA 670
V+ A
Sbjct: 738 ADVRWA 743
>gi|134114680|ref|XP_774048.1| hypothetical protein CNBH0940 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256678|gb|EAL19401.1| hypothetical protein CNBH0940 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 748
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 224/781 (28%), Positives = 351/781 (44%), Gaps = 156/781 (19%)
Query: 3 LERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHG 62
L+ T + + F R +LL +ER AE E T+ LN+ +P L G
Sbjct: 6 LQPKPTPDASVQAFLNRHKQLLELERKAEEEQTRL-LNSKCSPS----------LLEQRG 54
Query: 63 RAPQELCDTICNLFVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLSPGDMVCVRVCDS 118
A + L V S GLGG L+ L R H LPP T PGD V + ++
Sbjct: 55 LA-------LNGLGVSGISIGLGGKSLIELHRPLAYHTSPALPPHTFRPGDPVRI---EA 104
Query: 119 RGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRID-----RIQGLADT 173
A + I+G ++G V R G +S ID R+ LA++
Sbjct: 105 HVATTSGKIKGKKRESEDEGAVEGVVY--RVGPEKVVVAVNESKEIDLPERLRLLKLANS 162
Query: 174 LTYERNCEALMLLQK----NGLHKRNPS--IAAVVTLFGDKEDVTWLE----ENDLADWS 223
+T++R + L L++ +G PS + V L G K+ TW E +N++
Sbjct: 163 VTFDRMEKTLAHLERLVLPSGGTPSPPSFNMPLVQALLG-KQLPTWKETIPPQNNIEPLG 221
Query: 224 EVKLDGIM---GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG- 279
++ D M G+ +DSQK++I L K + I GPPGTGKT L E+I + + +
Sbjct: 222 QLSSDEDMKWFGQHLNDSQKESIKFCL-KANEVACIHGPPGTGKTHTLVELIFQLLSRPA 280
Query: 280 -------ERVLVTAPTNAAVDNMVEKLSDVGL-----------NIVRVGNPARISPAVAS 321
R+L+T P+N A+DN++ +L + + +R+G+P R+ +
Sbjct: 281 SPNTTLPPRILITTPSNLALDNLLIRLHILAQQPPYSSLLPRNSFLRMGHPTRVHRDLVK 340
Query: 322 KSL---------GEIVK---SKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
++L GE++K ++ + +K+ + + +K ++ ++
Sbjct: 341 ETLDWKAANGDQGELLKDVGKEMQGHLDALGKKRGE-----KGAVKGKERGKKWGEV-RE 394
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT--FD---------------- 411
L K +++E + VK V++ AQ+VLAT A R+L+ FD
Sbjct: 395 LRKEYRQREGKVVKTVVNGAQIVLATCHSAGS---RQLNNMIFDVCIIDEATQAVEAVCW 451
Query: 412 ---LVGKRCILAGDQCQLAPVILSR------KALEGGIG-----------------VSLL 445
L K+ ILAGD QL P I+S+ K L+ I +L
Sbjct: 452 VPILKSKKLILAGDPQQLPPTIMSKENAPPLKDLQEAIDQIKLGDSPSLKSPRTLETTLF 511
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK---- 501
ER L+ + L QYRMN+ IA + S+ +Y +LIS ++VA L++ P VK
Sbjct: 512 ERLEKLYGPGIKRVLQVQYRMNEHIAVFPSETLYESALISDASVAKRTLLELPSVKDKTS 571
Query: 502 --------PTWITQCPLLLLDTR--LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV 551
PT ++ DT Y E G GS NE EAEIV
Sbjct: 572 EDVKDDLEPT------VVFFDTADCEFYERTEGDGEATKSSIGEGSKSNENEAEIVARWA 625
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISM 610
LI G+ P I + +PY AQV + L ++ PE + + ++D QG+E +A+I+S+
Sbjct: 626 RKLISLGIPPIEIGIVTPYQAQVTLISSLLHEEYPE---MTIGSVDGLQGQEREAIILSL 682
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKH 669
VRSN G VGFLG+ RR+NVA+TRA + + VV DS T+ T +L + + + V+
Sbjct: 683 VRSNPSGEVGFLGEYRRLNVAMTRAKRQLCVVGDSKTVSKGTKYLKKWMDWLEAEAYVRW 742
Query: 670 A 670
A
Sbjct: 743 A 743
>gi|303284135|ref|XP_003061358.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456688|gb|EEH53988.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 224
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/224 (51%), Positives = 139/224 (62%), Gaps = 18/224 (8%)
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPY 519
LTTQYR + AI+ WAS+EMY G+L +S V+S LL D P V T T PL+LLDTR
Sbjct: 1 LTTQYRSHVAISDWASREMYSGNLFASDVVSSRLLRDLPGVMTTAATSTPLMLLDTRTAG 60
Query: 520 GSLSLGCEEHLD------------LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
G L GC E + + S NEGEA V HV L+ AGV P I VQ
Sbjct: 61 GLLLAGCSEQSERDIGGGGASATATTSSSSLANEGEAYAVTMHVAGLLGAGVKPRDIKVQ 120
Query: 568 SPYVAQVQHLRERLDDL------PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
SPY AQV+ +R +L + P A VEVA++DSFQGREA+ VI+S VRSN GAVGF
Sbjct: 121 SPYAAQVRLIRAKLQAVADAGAAPGAERVEVASVDSFQGREAECVIVSTVRSNDRGAVGF 180
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
L D RRMNVA TRA +HVA+V DS+T+ + FL RLL H+R G
Sbjct: 181 LSDRRRMNVAFTRARRHVAIVGDSATVGSDPFLRRLLDHVRACG 224
>gi|375084259|ref|ZP_09731266.1| DNA helicase, UvrD/REP family protein [Thermococcus litoralis DSM
5473]
gi|374741144|gb|EHR77575.1| DNA helicase, UvrD/REP family protein [Thermococcus litoralis DSM
5473]
Length = 656
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 207/715 (28%), Positives = 327/715 (45%), Gaps = 138/715 (19%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+ ++ EL+ +ER+AE+E +EE+ + G ++L I NL
Sbjct: 6 YIAKLIELVELEREAEIEAMREEMRRL------------------RGYEREKLGRAILNL 47
Query: 76 FVVSTSTGLG---GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
+G G LV + G T +S GD+V + SRG S + G V
Sbjct: 48 ----NGKIIGEEFGFKLVKY---GRKEPFKTEISVGDLVLI----SRGNPLMSDLVGTVV 96
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
G I +ALES P+++ ++VRID A+ +T+ R E L L +NG+
Sbjct: 97 EKG--SRFIVIALES---VPSWA---LRNVRIDL---YANDVTFRRQIENLKRLSENGIK 145
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
A + L +K + +E + D K + +Q+KAI L L +
Sbjct: 146 ------ALKLILKQEKPMKSIPQEFEPFD-----------KNLNPTQRKAINLALGSE-D 187
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+I GP GTGKT L E+I + V++G +VL TA +N AVDN+VE+L + +VR+G+P
Sbjct: 188 FFLIHGPFGTGKTRTLAELILQEVKRGSKVLATAESNVAVDNLVERLWG-KVKLVRLGHP 246
Query: 313 ARISPAVASKSLGEIVKS---------------KLASFVAEFERKKSDLRKDL--RQCLK 355
+R+S + +L V+S +LA + ++ LR+ L +Q LK
Sbjct: 247 SRVSKHLKESTLAFQVESHERYRRVRELRNKAERLAMMRDQHKKPTPSLRRGLTNKQILK 306
Query: 356 DDSLAAGIR-----------------QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
G R + +++L K K E+E ++E++ V+L+TN+
Sbjct: 307 LAEKGRGARGVPAKDVKEMAQWIVLNEEVQKLYKFAGKIEEEIIREIIDKTDVILSTNSS 366
Query: 399 AADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGG 439
AA IR ++ FD+ KR +LAGD QL P ILS +A E
Sbjct: 367 AALEFIRDVE-FDVAIIDEASQATIPSVLIPIAKAKRFVLAGDHKQLPPTILSEEAKE-- 423
Query: 440 IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD--- 496
+ +L E+ L+ A L QYRMN+ + + S+E Y G + + +V + L D
Sbjct: 424 LSETLFEKLIDLYPEK-AKMLEIQYRMNEKLMEFPSREFYNGKIKADESVKNITLADLKV 482
Query: 497 -TPFVKPTWIT----QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV 551
PF W + + PL+ +DT + G+ S N EA +V V
Sbjct: 483 REPFFGEPWDSILKREEPLVFVDT------AERRDKWERQRKGSTSRENPLEALLVKEIV 536
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
L GV I + +PY QV +R + + +EV T+D +QGRE + +++S V
Sbjct: 537 EKLFRMGVKEEWIGIITPYDDQVDLIRSLVGE-----EIEVHTVDGYQGREKEVIVLSFV 591
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGR 666
RSN +GFL D RR+NVA+TRA + + + DS T+ + R L ++ GR
Sbjct: 592 RSNKEDELGFLTDLRRLNVALTRAKRKLIAIGDSETLSTHPTYKRFLEFVKRHGR 646
>gi|302306881|ref|NP_983306.2| ACL098Cp [Ashbya gossypii ATCC 10895]
gi|299788730|gb|AAS51130.2| ACL098Cp [Ashbya gossypii ATCC 10895]
Length = 657
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 163/479 (34%), Positives = 242/479 (50%), Gaps = 65/479 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+ SQ+ A+A L + + II GPPGTGKT L E+I + +G RVLV P+N AVD
Sbjct: 187 LNASQRDAVAFALRNE--ISIIHGPPGTGKTHTLVELIRQLYDRGHRVLVCGPSNIAVDT 244
Query: 295 MVEKLSDV--GLNIVRVGNPARISPAVASKSLGEIVKS-KLASFVAEFERKKSDLRKDLR 351
++E+LS G ++RVG+PAR+ P + SL + K S V + R+ + D+R
Sbjct: 245 VLERLSRPIPGAELLRVGHPARLLPGNLAHSLDILAKEGDGGSIVRDIGREINQRIADVR 304
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA--------DPL 403
+ +K Q ++ L K LK++E+ V E++ +A+VV+ T G++ D
Sbjct: 305 K-IKSSRDRKKAWQEVRDLRKELKQRERNVVSELILAARVVVCTLHGSSAYSLCHMYDKC 363
Query: 404 IRRLDT--FDLVGK-------------------RCILAGDQCQLAPVILS------RKAL 436
R DT D V + + ++AGD QL P + + R+ L
Sbjct: 364 ARLFDTVIIDEVSQSLEPQCWIPLISHYQSNISKLVIAGDNKQLPPTVKTEDDAHVRQVL 423
Query: 437 EGGIGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV 495
I LER H G KL QYRMN+ I ++AS+ +Y G L + VAS L
Sbjct: 424 STTI-FDKLER----HYGDQFKKLLDVQYRMNERIMAFASESLYAGKLKAWQGVASQTLA 478
Query: 496 DTPFVKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVF 552
D P V + T PL+ DT+ P + G A S +NE EA +V+HH+
Sbjct: 479 DLPGVDESDDTSAPLVWYDTQGDDFPEAEEAAGGP-----ALMASKFNENEAYLVLHHIS 533
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVR 612
L V AI V SPY AQV L++ + + VE++++D FQGRE + +++S+VR
Sbjct: 534 QLRACNVPQEAIGVISPYNAQVALLKKIIHG--QHPLVEISSVDGFQGREKECIVLSLVR 591
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFLARLLR------HIRY 663
SN VGFL D RR+NVA+TRA + + V+ + T+ + FL +R IRY
Sbjct: 592 SNDSFDVGFLRDERRLNVAMTRARRQLCVIGNMETLERSQSQFLRSWVRWSEEHSEIRY 650
>gi|332663425|ref|YP_004446213.1| ATPase AAA [Haliscomenobacter hydrossis DSM 1100]
gi|332332239|gb|AEE49340.1| AAA ATPase [Haliscomenobacter hydrossis DSM 1100]
Length = 634
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 139/444 (31%), Positives = 223/444 (50%), Gaps = 45/444 (10%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
+I GPPGTGKT L + I ++ + VLVTAP+N AVD + EKL+++ L +VR+GN +R
Sbjct: 202 VIHGPPGTGKTTTLVQAIKLLAEREKTVLVTAPSNTAVDLLSEKLAELDLRVVRIGNISR 261
Query: 315 ISPAVASKSLG-EIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAG-----IRQLLK 368
I ++ +L +I + + V + + + +D R+ + A + Q
Sbjct: 262 IDESILRHTLEYQISQHPDSKNVKKVKIQAADYRRQANRLRSKRGYEAYEERKRLEQEAS 321
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDT--FDLVGK--------- 415
+L E+ V +L AQV+ T GAA P++ R+ T D +
Sbjct: 322 ELSAWANSLEQRLVDMILDEAQVITCTLVGAAHPVLDQRKFRTAIVDEAAQALEPATWIP 381
Query: 416 -----RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
+ +L GD QL P + S++A + G ++++E+ + V L QYRMN+ I
Sbjct: 382 ITKASKLVLTGDPFQLPPTVKSQEAAKKGFNITMIEKCLKRLQQV--NLLNIQYRMNEGI 439
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+++++ Y L+++ V H L P++ +DT G +E +
Sbjct: 440 MGFSNRQFYNNELMAAPEVKDHRL--------DIAADAPVIFIDT------AGCGFDEKV 485
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVS--PSAIAVQSPYVAQVQHLRERLDDLPEAA 588
A S YN E +++ H++ + A + P +IA+ SPY Q H+ + L D P
Sbjct: 486 HHA-YQSKYNPEEFQVLREHLYQIAEAFLEKIPPSIAIISPYREQALHMEDELKDDPMVR 544
Query: 589 GVE--VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
++ + TID FQG+E D V IS+VRSN G +GFL D RRMNVA+TRA K + +V DS+
Sbjct: 545 KLDLTINTIDGFQGQEKDLVFISLVRSNPKGEIGFLSDYRRMNVAMTRARKQLIIVGDSA 604
Query: 647 TICHNTFLARLLRHIRYFGRVKHA 670
TI +N F L + G + A
Sbjct: 605 TIGNNKFYRDFLEYCEVVGEYRSA 628
>gi|405122411|gb|AFR97178.1| DNA helicase [Cryptococcus neoformans var. grubii H99]
Length = 748
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 225/781 (28%), Positives = 353/781 (45%), Gaps = 166/781 (21%)
Query: 8 TIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQE 67
T + L F R +LL +ER AE E T+ LN+ +P L G A
Sbjct: 11 TPDASLQSFLNRHKQLLELERKAEKEQTRL-LNSKCSPS----------LLEQRGLA--- 56
Query: 68 LCDTICNLFVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLSPGDMVCVRV------CD 117
+ L V S GLGG L+ L R H LPP T GD V +
Sbjct: 57 ----LNGLGVSGISIGLGGKSLIELHRPLAYHTSPALPPHTFRSGDPVRIEAHVATTSGK 112
Query: 118 SRGACATS----CIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADT 173
++G S ++G V+ +G + ++V SK R+ R+ LA++
Sbjct: 113 NKGKKKESEDEGAVEGVVYRVGPEKVVVAV---------NESKEIDLPERL-RLLKLANS 162
Query: 174 LTYERNCEALMLLQK----NGLHKRNPS--IAAVVTLFGDKEDVTWLE----ENDLADWS 223
+T++R + L L++ +G+ S + V L G K+ TW E +ND+ S
Sbjct: 163 VTFDRMEKTLAHLERLVLPSGITPSPSSFNMPLVQALLG-KQLPTWKETIPPQNDVEALS 221
Query: 224 EVKLDGIM---GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG- 279
++ D M G+ ++SQK++I L K + I GPPGTGKT L E+I + + +
Sbjct: 222 QLSSDEDMKWFGQHLNNSQKESIKFCL-KANEIACIHGPPGTGKTHTLVELIFQLLSRPA 280
Query: 280 -------ERVLVTAPTNAAVDNMVEKLSDVGL-----------NIVRVGNPARISPAVAS 321
R+L+T P+N A+DN++ +L + + +R+G+P R+ +
Sbjct: 281 SPNTTVPPRILITTPSNLALDNLLIRLHILAQQPPYSSLLPRNSFLRMGHPTRVHRDLVK 340
Query: 322 KSL---------GEIVK---SKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
++L GE++K ++ + +K+ + K + + + IR+L K+
Sbjct: 341 ETLDWRAANGDQGELLKDVGKEIQGHLDALGKKRGE--KGAVKGKERGNKWGEIRELRKE 398
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT--FD---------------- 411
+++E + VK V++ AQ+VLAT A R+L+ FD
Sbjct: 399 Y----RQREGKVVKTVVNGAQIVLATCHSAGS---RQLNNMVFDVCIIDEATQAVEAVCW 451
Query: 412 ---LVGKRCILAGDQCQLAPVILSR------KALEGGIG-----------------VSLL 445
L K+ ILAGD QL P I+S+ K L+ I +L
Sbjct: 452 VPILKSKKLILAGDPQQLPPTIMSKEDTPPLKDLQEAIDQIKLGDSPSLKSPRTLETTLF 511
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK---- 501
ER TL+ + L QYRMN+ IA + S+ +Y +LIS ++VA L++ P VK
Sbjct: 512 ERLETLYGPGIKRVLQVQYRMNEHIAVFPSETLYESALISDASVAKRTLLELPSVKDKTS 571
Query: 502 --------PTWITQCPLLLLDTR--LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV 551
PT ++ DT Y E G GS NE EAEIV
Sbjct: 572 EDVKDDLEPT------VVFFDTADCEFYERTEGDGEAAKSYIGEGSKSNENEAEIVARWA 625
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISM 610
LI G+ P I + +PY AQV + L ++ PE + + ++D QG+E +A+I+S+
Sbjct: 626 RKLISLGIPPIEIGIVTPYQAQVTLISSLLHEEYPE---MTIGSVDGLQGQEREAIILSL 682
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKH 669
VRSN G VGFLG+ RR+NVA+TRA + + VV DS T+ T +L + + + V+
Sbjct: 683 VRSNPSGDVGFLGEYRRLNVAMTRAKRQLCVVGDSKTVSKGTKYLKKWMDWLEAEADVRW 742
Query: 670 A 670
A
Sbjct: 743 A 743
>gi|296109905|ref|YP_003616854.1| DNA helicase [methanocaldococcus infernus ME]
gi|295434719|gb|ADG13890.1| DNA helicase [Methanocaldococcus infernus ME]
Length = 639
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 194/707 (27%), Positives = 331/707 (46%), Gaps = 135/707 (19%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+D + ++ L+ +ER E+EF +EE+ + GR +E+ I
Sbjct: 4 IDMYVRKFLNLIELERKYEMEFHKEEIKRL-------------------GRKREEVGRAI 44
Query: 73 CNLFVVSTSTGLG---GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
NL LG G LV F G + T +SPGD+V V S+G S +
Sbjct: 45 LNL----KGKFLGQSLGCTLVRF---GRSKEIKTEISPGDVVLV----SKGDPLKSDLYA 93
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V +G++ ++ ++ P + +F + VRID + +T++R EAL ++K
Sbjct: 94 NVIYVGKNFIDVAFDVDV----PRW--VFKERVRIDL---FINDITFKRMKEALRYIEKE 144
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
P + ++ G ++ L+E+ ++ + K ++SQK+A+ +
Sbjct: 145 -----KPKLINII--LGIEKPEKPLKEDIEMEFYD--------KELNESQKRAVKRAILS 189
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVG--LNI 306
K L +I GPPGTGKT L E+I + V+ +VL TA +N A DN++E L L +
Sbjct: 190 K-DLYLIHGPPGTGKTRTLTEVIVQEVKFNKHKVLATADSNIAADNILEYLIKKYPFLKV 248
Query: 307 VRVGNPARISPAVASKSLGEIVKS--------KLASFVAEFERKKSDLRK---DLRQCLK 355
VR+G+P RIS + SL +++ KL ++E + ++ K R+ +
Sbjct: 249 VRIGHPTRISKDLIEHSLPYLIECHPKYQKVLKLKEKISEIKEERDKFLKPSPRWRRGMS 308
Query: 356 DD---------------------SLAAGIRQ--LLKQLGKTLKKKEKETVKEVLSSAQVV 392
DD S+A I++ +K L L+K KE E++ A V+
Sbjct: 309 DDQILKVAKKNKDYRGVPKEKIKSMAQWIKKNAKIKVLVDKLEKLSKEIADEIIKEADVI 368
Query: 393 LATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILS- 432
++TN+ A +++ FD+V G++ I+AGD QL P +LS
Sbjct: 369 VSTNSMAGSEVLKDY-FFDVVVIDEGSQAMEPSCLIPIIKGEKLIMAGDHKQLPPTVLSD 427
Query: 433 RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH 492
+ L+ + L+++ ++ L QYRMN+ I + ++ Y L ++ +V +
Sbjct: 428 NEELKKTLFEKLIKKYPEF-----SSILEIQYRMNEKIMEFPNRMFYENKLKAAESVKNI 482
Query: 493 LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVF 552
L+D VK ++ ++P + EE D + S+YNE EA+ V+ V
Sbjct: 483 TLMD--LVKEVDEEDKDII---NKIPVQFFHVDGEEKRD-KDSPSYYNEEEAKKVLEVVK 536
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVR 612
L+ + S I +PY AQV+ LR ++ E VEV T+D FQGRE +A++IS VR
Sbjct: 537 KLVKYKIPVSVI---TPYDAQVRLLRRMFEE--EGLDVEVNTVDGFQGRENEAIVISFVR 591
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+ GFL D RR+NVAITRA + + ++ + + + +T +L+
Sbjct: 592 TKNF---GFLKDYRRLNVAITRAKRKLILIGNENLLKKDTIYNEMLK 635
>gi|242399980|ref|YP_002995405.1| DNA helicase, UvrD/REP family [Thermococcus sibiricus MM 739]
gi|242266374|gb|ACS91056.1| DNA helicase, UvrD/REP family [Thermococcus sibiricus MM 739]
Length = 716
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 199/722 (27%), Positives = 330/722 (45%), Gaps = 137/722 (18%)
Query: 9 IQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQEL 68
I + + ++ +L+ +ER+AE+E +EE+ + G +++
Sbjct: 58 ITMHVKNYIAKLVDLVELEREAEIEAMREEMRRL------------------KGYEREKV 99
Query: 69 CDTICNLFVVSTSTGLG---GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATS 125
I NL +G G LV + G T + GD+V + S+G S
Sbjct: 100 GRAILNL----NGKIIGEEFGFKLVKY---GRKEAFKTEIGVGDLVVI----SKGNPLAS 148
Query: 126 CIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALML 185
+ G V G I VALE+ P+++ ++VRID A+ +T+ R E L
Sbjct: 149 DLVGTVVEKG--SRFIVVALET---VPSWA---FRNVRIDL---YANDITFRRQLENLKK 197
Query: 186 LQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIAL 245
L ++G+ + L E+ T + N + SQK+A++
Sbjct: 198 LSESGIRALKLILGKETPLKSSPEEFTPFDRN-----------------LNQSQKEAVSY 240
Query: 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN 305
L + +I GP GTGKT L E+I + V++G ++L TA +N AVDN+VE+L +
Sbjct: 241 ALGSE-DFFLIHGPFGTGKTRTLVELIVQEVKRGNKILATAESNVAVDNLVERLWG-KVK 298
Query: 306 IVRVGNPARISPAVASKSLGEIVKS---------------KLASFVAEFERKKSDLRKDL 350
+VR+G+P+R+S + +L V+S +LA ++++ +R+ L
Sbjct: 299 LVRLGHPSRVSVHLKESTLAFQVESHERYRKVRELRNKAERLAVMRDQYKKPTPQMRRGL 358
Query: 351 --RQCLKDDSLAAGIRQL----LKQLGK--TLKKKEKETVK-----------EVLSSAQV 391
Q LK G R + +KQ+ + TL ++ ++ K E++ V
Sbjct: 359 TNNQILKLAYRGRGSRGVPAKDIKQMAQWITLNEQIQKLYKFAEKIESEIIQEIIEDVDV 418
Query: 392 VLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILS 432
VL+TN+ AA I+ + FD+ +R +LAGD QL P ILS
Sbjct: 419 VLSTNSSAALEFIKDAE-FDVAIIDEASQATIPSVLIPIAKARRFVLAGDHKQLPPTILS 477
Query: 433 RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH 492
+A + +L E+ L+ A L QYRMN + + S+E Y G + + +V
Sbjct: 478 EEA--RALSETLFEKLIELYP-FKAKMLEIQYRMNQLLMEFPSREFYNGKIKADGSVKDI 534
Query: 493 LLVD----TPFVKPTWIT----QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEA 544
L D PF W + + PL+ +DT + + E G+ S N EA
Sbjct: 535 TLADLKVREPFFGEPWDSILKREEPLIFVDT----SNRTDKWERQR--KGSTSRENPLEA 588
Query: 545 EIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREAD 604
+V V L+ G+ I + +PY QV +R + D +E+ T+D +QGRE +
Sbjct: 589 LLVREIVERLLRMGIKKEWIGIITPYDDQVDSIRSIIQD----DEIEIHTVDGYQGREKE 644
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYF 664
+I+S+VRSN G +GFL D RR+NV+ITRA + + V+ DS T+ ++ RL+ ++ +
Sbjct: 645 IIILSLVRSNKKGELGFLMDLRRLNVSITRAKRKLVVIGDSETLVNHETYKRLIHFVKKY 704
Query: 665 GR 666
GR
Sbjct: 705 GR 706
>gi|240282138|gb|EER45641.1| insulin II gene enhancer-binding protein rip1 [Ajellomyces
capsulatus H143]
Length = 734
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 237/478 (49%), Gaps = 93/478 (19%)
Query: 221 DWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE 280
D S + + T +DSQ++AI L K + +I GPPGTGKT L E+I + ++Q
Sbjct: 221 DLSSIGTIEFIDPTLNDSQREAIRFALAAKE-IALIHGPPGTGKTYTLIELILQFLRQNL 279
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA--- 337
R+LV P+N +VDN+VE+L+ + +VR+G+PAR+ V SL ++++ A+ +
Sbjct: 280 RILVCGPSNVSVDNIVERLAPHKVPLVRIGHPARLLSTVLDHSLEVLIQTSDAAAIVKDI 339
Query: 338 --EFERKKSDLRK-----DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQ 390
E E K++ +RK + R+ +D LK+L K +++E + V +++ +
Sbjct: 340 RKEIEVKQASIRKTRSGRERREIYRD----------LKELRKEFRERESKCVGNLVTDCK 389
Query: 391 VVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVIL 431
VVLAT GA +R FD+V + ILAGD QL P +
Sbjct: 390 VVLATLHGAGGHQLRN-QKFDVVIIDEASQALEAQCWVPLLSASKAILAGDHLQLPPTVK 448
Query: 432 S--------------------------------RKALEGGIGVSLLERAATLHEGVLATK 459
S KA G + ++L +R +LH +
Sbjct: 449 SATLKFSGAVGNGKSPDDEQSVLRMDKDNNVGQHKAKGGTLEMTLFDRLLSLHGPAIKRM 508
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLP 518
LTTQYRM++ I + S+E+Y LI++ V LL D P+ V+ T T+ PL
Sbjct: 509 LTTQYRMHEKIMQFPSQELYESKLIAADAVKLRLLKDLPYEVEETDDTREPL-------- 560
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVV--HHVFSLICAGVSPSAIAVQSPYVAQVQH 576
G EE + + EA+I + HV +LI AGV P +AV +PY AQ+
Sbjct: 561 GGDFPEKVEEP-------AVMPKAEADIPLCREHVENLIGAGVKPEDVAVVTPYNAQLAL 613
Query: 577 LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
L L D + G+E+ ++D FQGRE +AVI+S+VRSN VGFL + RR+N ++ +
Sbjct: 614 LSSMLKD--KYPGLELESVDGFQGREKEAVIVSLVRSNPEHEVGFLAEKRRLNASVMK 669
>gi|313219712|emb|CBY30632.1| unnamed protein product [Oikopleura dioica]
Length = 857
Score = 199 bits (505), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 196/616 (31%), Positives = 289/616 (46%), Gaps = 112/616 (18%)
Query: 100 LPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFG 159
LP T +S G V + + DSR +GFV + E TI V ++ G+ G
Sbjct: 13 LPATEISHGKPVVITMPDSR-------YRGFVFSTSE--ATIDVCVDV--GENGEKIALG 61
Query: 160 KSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLE-END 218
R+D I D +TY R +A K + R S V +FG+ + + E+
Sbjct: 62 D--RLD-IMPAPDDITY-RRMKAASEEMKKMIETR--SSRTVDIIFGESQPYPQVSTESF 115
Query: 219 LADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ 278
LA ++VK + Q +A+ L + L+ + GPPGTGK+ + I+A A Q+
Sbjct: 116 LAPKTDVK-------NLNKEQLEAVRASLAIQD-LMCLHGPPGTGKSTTVAAIVAEAAQR 167
Query: 279 GERVLVTAPTNAAVDNMVEKLSDVGLNIV-RVGNPARISPAVASKSLGEIVKSKLASFVA 337
G + +VT P+NAAVD +VEKL+ +V R+G+PAR SP + +L
Sbjct: 168 GIKTIVTCPSNAAVDALVEKLAKRREVVVTRLGHPARTSPHLRQYTL------------- 214
Query: 338 EFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
E K +D+ ++ + LK D AA R+ +L K L+ +EK+ E+L+++ V+AT T
Sbjct: 215 --EAKMADV--EMLRGLKSDMYAASGRER-GELRKELRDREKKCSTEILANSHAVVATCT 269
Query: 398 GA---------ADPLIRRLDTFDLVG-----------KRC----ILAGDQCQLAPVILSR 433
+DP L D G +RC ILAGD QL P + +
Sbjct: 270 VVGMKSILDVISDPEHFGLAIVDEAGQAVEPAIYPILRRCSKKLILAGDPAQLPPTVKFK 329
Query: 434 KALEGGIGVSLLERAATLHEGVLATK------LTTQYRMNDAIASWASKEMYGGSLISSS 487
G S+L + TL E ++ L QYRMN I+ W S MY G LI+
Sbjct: 330 -------GASILTK--TLLEDLMGRYPSNTVLLKRQYRMNKMISDWVSDSMYRGELIADE 380
Query: 488 TVASHLLVD-------------TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
+V +H L D FV+ I P+ L+DT E+ + G
Sbjct: 381 SVQNHTLADLLQDVEGVAKQAGADFVED--ILSSPMTLIDTVGSNMDEDQVSEDQSKVLG 438
Query: 535 TGSFYN-----EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
S + GEA + LI AG+ P IA+ SPY AQVQ + + +
Sbjct: 439 CQSIEHFPETIPGEALLATLTTKILIKAGIKPKNIAIISPYAAQVQLIAKLV-----GPT 493
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
V V T+D +QG EA+ VI+S+VRSN G GFL D RR+NVA++RA K V+ DS T+
Sbjct: 494 VSVRTVDGYQGGEAEVVILSLVRSNIDGTTGFLSDRRRLNVAVSRARKSCIVIGDSGTVT 553
Query: 650 HNTFLARLLRHIRYFG 665
++F+ ++ YFG
Sbjct: 554 RDSFIEKMF---EYFG 566
>gi|327402000|ref|YP_004342839.1| DNA helicase [Archaeoglobus veneficus SNP6]
gi|327317508|gb|AEA48124.1| DNA helicase [Archaeoglobus veneficus SNP6]
Length = 664
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 202/724 (27%), Positives = 328/724 (45%), Gaps = 148/724 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+D + R+ +L+ +ER AE+E +EE+ + + GRA L +
Sbjct: 3 VDSYISRLRKLVELERRAEIESMKEEMRKLSGYERER-----------RGRAILRLNGKV 51
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
G LV + G T +S GD+V + S+G S + V
Sbjct: 52 IGREF--------GYKLVKY---GRKERIETEISVGDLVVI----SKGDPLKSDLIATVV 96
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
G +S+ + + K+VRID A+ +T +R E L L ++G
Sbjct: 97 EKGTRYIVVSI--------DSIPEWALKNVRIDL---YANDITLKRMIENLEKLSESG-- 143
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFD----DSQKKAIALGLN 248
K + +L L K + + FD +SQ++A++L L
Sbjct: 144 ---------------KRTLRFL----LGIERPRKPKAVNFEPFDNKLNESQREAVSLALG 184
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
R +I GP GTGKT L E+I + V++G +VL TA +N AVDN+VE+L+ + +VR
Sbjct: 185 S-RDFFLIHGPFGTGKTRTLTELILQEVKRGNKVLATAESNVAVDNLVERLAG-KVRLVR 242
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ-------------CLK 355
+G+P+RIS + S+ + + A+ E+ + + K +RQ L
Sbjct: 243 LGHPSRISRHLIESSI--FFQVEKHERFAKAEKLRDEAEKLIRQRDSEVKPSPHWRRGLS 300
Query: 356 DDSLAA----GIR------QLLKQLGKTLKKKEKETVKEVL---------------SSAQ 390
D+ + G R ++LK + K +K + ++++L +S+Q
Sbjct: 301 DEEIVKAAERGKRFRGIPYRVLKSMAKWIKLNRE--IQKLLDEAREIEEEIAREIINSSQ 358
Query: 391 VVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVIL 431
VVLATN+ AA LI+ ++ FD+ +R +LAGD QL P +L
Sbjct: 359 VVLATNSSAALELIKDVE-FDVAVIDEASQATIPSVLIPISKTRRFVLAGDHKQLPPTVL 417
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
S++A E + +L E+ + + L QYRMN + + S+E YGG L + +V +
Sbjct: 418 SQEAAE--LSETLFEKLIEAYPEN-SKMLEVQYRMNKKLMEFPSREFYGGRLKADDSVRN 474
Query: 492 HLLVDTPFVKPT---W---ITQCPLLLLDTRLPYGSLSLGCEEHLD--LAGTGSFYNEGE 543
L D +P W + PL+ +DT C + + G+ S NE E
Sbjct: 475 ITLADLGVKEPKFGFWNEVLGSEPLVFIDTS--------KCADRWERQRKGSPSRENELE 526
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
A I+ V L+ GV I V +PY QV ++ + + E +EV T+D +QGRE
Sbjct: 527 ARIIKELVERLLKIGVKAGQIGVITPYDDQVDLIKRYIKGIEE---IEVKTVDGYQGREK 583
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRY 663
D +IIS VRSN G VGFL D RR+NV++TRA + + + D+ T+ N R + ++
Sbjct: 584 DVIIISFVRSNERGEVGFLDDLRRLNVSLTRARRKLIAIGDTETLSTNETYRRFIEFVKK 643
Query: 664 FGRV 667
G++
Sbjct: 644 EGKL 647
>gi|301092662|ref|XP_002997185.1| nonsense transcript regulator [Phytophthora infestans T30-4]
gi|262111572|gb|EEY69624.1| nonsense transcript regulator [Phytophthora infestans T30-4]
Length = 687
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 154/453 (33%), Positives = 222/453 (49%), Gaps = 79/453 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT I+ +Q +VLVTAP+N AVD++ K+S GL +VR
Sbjct: 115 EQPLSLIQGPPGTGKTVTSASIVFHMSKQNMGQVLVTAPSNIAVDHLTMKISATGLRVVR 174
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R ++ +V SL ++KS + K+DLRK ++ LKDD I +L
Sbjct: 175 LAAKSREAVASSVEHLSLHAMIKSLDSP-------DKADLRKLMQ--LKDD-----IGEL 220
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
Q K K +++ +E+L +A V+ T GA DP RL F
Sbjct: 221 SSQDEKRFKSLKRQAEREILQAADVICTTCVGAGDP---RLSNFRFRQVLIDEATQATEP 277
Query: 414 ---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
K ++ GD QL PV++++KA + G+ SL +R +L QY
Sbjct: 278 ECLIPIVQGAKHVVMVGDHRQLGPVVMNKKAAKAGLNNSLFDRLVKSDTKHRPFRLRVQY 337
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFV---KPTWITQCPLLLLDTRLPY 519
RM+ ++ + S E Y G L + + L VD P+ KPT+ C
Sbjct: 338 RMHPFLSEFPSNEFYEGDLQNGVAASERQLSSVDFPWPNPNKPTFFYIC----------- 386
Query: 520 GSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH--- 576
LG EE + +GT S+ N EA V V + + AGV PS I V +PY Q +
Sbjct: 387 ----LGAEE-ISSSGT-SYLNRTEASNVEKIVTTFLKAGVLPSQIGVITPYEGQRAYVVS 440
Query: 577 -------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
LR +L VEVA++DSFQGRE D +I+S VRSN +GFL D RR+N
Sbjct: 441 YMQRNGPLRSQL-----YKDVEVASVDSFQGREKDLIILSCVRSNENQGIGFLSDERRLN 495
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA V ++ + + T +LL H R
Sbjct: 496 VALTRAKYGVILLGNPRVLAKQTLWNKLLNHYR 528
>gi|119497825|ref|XP_001265670.1| DNA helicase, putative [Neosartorya fischeri NRRL 181]
gi|119413834|gb|EAW23773.1| DNA helicase, putative [Neosartorya fischeri NRRL 181]
Length = 713
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 232/452 (51%), Gaps = 70/452 (15%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +DSQK+AI L R + +I GPPGTGKT L E+I + V++ RVLV P+N +VD
Sbjct: 245 TLNDSQKEAIRFAL-ASRDVALIHGPPGTGKTHTLIELILQMVKRKLRVLVCGPSNVSVD 303
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA-----EFERKKSDLRK 348
N+VE+L+ G+ +VR+G+PAR+ P+V SL + + A+ + E + K++ +RK
Sbjct: 304 NIVERLAPNGVPVVRIGHPARLLPSVLEHSLEVLTHTSEAAAIVKDVRKEIDEKQASIRK 363
Query: 349 DL----RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI 404
R+ + DD LK+L + +++E V ++ + VVLAT GA +
Sbjct: 364 TRTGRERRAIYDD---------LKELRREFRERESRCVDNLVRESNVVLATLHGAGGHQL 414
Query: 405 RRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKAL--------- 436
+ FD+V + +LAGD QL P + S
Sbjct: 415 KN-QKFDVVVIDEASQALEAQCWIPLLPASKVVLAGDHLQLPPTVKSSVEKSKNAKKKGK 473
Query: 437 ---------------EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGG 481
+ + +L +R +LH + LTTQYRM++ I + S E+Y
Sbjct: 474 SDTKDASASSAEIIGDFSLETTLFDRLLSLHGPGIKRMLTTQYRMHEKIMQFPSNELYES 533
Query: 482 SLISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGS 537
LI++ V S LL D P+ V+ T T+ P++ DT+ P + + L G S
Sbjct: 534 KLIAAEAVKSRLLKDLPYQVEETDDTREPVVFWDTQGGDFPEKTEDDDVGKKEALLGE-S 592
Query: 538 FYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDS 597
NE EA +V HV +LI AGV P IA +PY Q+ L L + + G+E+ ++D
Sbjct: 593 KSNEMEALVVAKHVQNLIQAGVKPEDIACITPYNGQLALLSSMLRE--KYPGLELGSVDG 650
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
FQGRE +AV++S+VRSN+ VGFLG+ RR+N
Sbjct: 651 FQGREKEAVVVSLVRSNSEHEVGFLGEKRRLN 682
>gi|325294544|ref|YP_004281058.1| DNA helicase [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325064992|gb|ADY72999.1| DNA helicase [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 721
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 193/709 (27%), Positives = 312/709 (44%), Gaps = 122/709 (17%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+ ++ L+ IER AE+E + E+ + GR + L I +L
Sbjct: 70 YVEKFKYLIDIERIAEIEAQEAEIRKLS------------------GRERELLGRAILDL 111
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
T +HLV F E + T + GD+V V S+G S + G V +
Sbjct: 112 KGTKAGTKFH-LHLVRFWRE---KPIETEIGTGDIVLV----SKGNPLKSELLGTVVRVT 163
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
E T++VA E+R P + ++ K VR+D E N EA K RN
Sbjct: 164 EK--TMTVAFENR--PPNW--VYKKGVRVDLYVNDVTFKRMEENLEAFRHATKRQREIRN 217
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
I + +D + KT ++ K+A+ + +
Sbjct: 218 IIIGLKEP-------------EKVEKEEFEVVDKRLNKTQINAVKQALG-----AKDFYL 259
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVG-LNIVRVGNPAR 314
I GPPGTGKT + E+I + V++G +VL TA +N A DN++ LS L +VR+G+PAR
Sbjct: 260 IHGPPGTGKTSTITELIVQLVKRGNKVLATADSNIAADNILLNLSKYSELKLVRIGHPAR 319
Query: 315 ISPAVASKSLGEIVKS--KLASFVAEFERKKSDLRK---------DLRQCLKDDSLA--- 360
+ + S+ + + K +ER + + K LR+ + DD +
Sbjct: 320 VLEELEKFSIYTLYEEHEKTQKIKEGWERVRELIEKREQFTKPLPHLRRGMSDDEIVFFG 379
Query: 361 ------AGI-RQLLKQLG-------------KTLKKKEKETVKEVLSSAQVVLATNTGAA 400
GI ++ ++ + K LK+ E ++++++SA VV++TN+
Sbjct: 380 RKGKSFRGIPKKTMRSMANWILTNYEIDVRIKALKEMESIVLRQIIASADVVISTNSMVK 439
Query: 401 DPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIG 441
L+ FD+ + +AGD QL P + S +A E +
Sbjct: 440 SELLEGFH-FDVAVIDEGSQQVEPSTLIPIMKADKFYIAGDHKQLPPTVTSEEAKE--LE 496
Query: 442 VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
+L ER H L++ L QYRMN+ I + ++E Y G L ++ V +H L D +
Sbjct: 497 KTLFERLINSH-SELSSMLQVQYRMNEKIMEFPNREFYEGKLRAAEIVKNHTLADFDLKE 555
Query: 502 PTWITQC-----PLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
P + PL LDT + E G+ S+ N EA+I + L
Sbjct: 556 PEKFKEILNPSEPLAFLDTS------DINAYE-FQPEGSTSYENYEEAKIAISIAEELCK 608
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
GV I + +PY AQV+ +++ L L + VEV ++D FQGRE + +IIS VRSN
Sbjct: 609 IGVDKKDIGIITPYAAQVKLIKQLL--LEKDLKVEVNSVDGFQGREKEVIIISFVRSNDE 666
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
G +GFL D RR+NVAITR + + + ++ T+ ++ R + +I+ G
Sbjct: 667 GEIGFLKDLRRLNVAITRPKRKLIAIGNAETLSNHEVYKRFIENIKEKG 715
>gi|403253185|ref|ZP_10919488.1| DNA helicase [Thermotoga sp. EMP]
gi|402811449|gb|EJX25935.1| DNA helicase [Thermotoga sp. EMP]
Length = 650
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 189/641 (29%), Positives = 300/641 (46%), Gaps = 113/641 (17%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV F G + T + GD+V + S+G S G V GE T++V
Sbjct: 57 GYFLVRF---GRRKKIDTEIGVGDLVLI----SKGNPLKSDYTGTVVEKGERFITVAV-- 107
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
P++ KL K+VRID A +T+ R E LM L G A+ L
Sbjct: 108 ---DRLPSW-KL--KNVRIDL---FASDITFRRQIENLMTLSPEGKK-------ALEFLL 151
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
G ++ EE + + E ++SQ++A++L L +I GP GTGKT
Sbjct: 152 GRRKPEESFEE-EFTPFDE---------GLNESQREAVSLALGSS-DFFLIHGPFGTGKT 200
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E + + +G ++LVTA +N AVDN+VE+L +++VR+G+P+R+S + +L
Sbjct: 201 RTLVEYVRQEAARGRKILVTAESNLAVDNLVERLWG-KVSLVRIGHPSRVSSHLKESTLA 259
Query: 326 EIVKS--------KLASFVAEFERKKSDLRK---DLRQCLKDDSL---------AAGI-R 364
+++ K+ +A+ K+ K R+ L D + A G+ +
Sbjct: 260 HQIETSSEYEKVKKMKEELAKLIEKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSK 319
Query: 365 QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ +K++ + +K +KE+ ++ AQVVL+TN+ AA +I + FD
Sbjct: 320 EKIKEMAEWIKLNNQIQDIRELIERKEEIIANRIVREAQVVLSTNSSAALEIISGI-VFD 378
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
+V GK+ +LAGD QL P ILS A + + +L E +
Sbjct: 379 VVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKD--LSRTLFEELINRY 436
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD----TPFVKPTW-ITQ 507
++ L TQYRMN+ + + S+E Y G L ++ V + L D P W +
Sbjct: 437 PEK-SSLLDTQYRMNELLMEFPSEEFYDGKLKAAEEVKNITLFDLGVEIPNFGKFWDVVL 495
Query: 508 CP---LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
P L+ +DT+ ++ + S N EA+IV V L+ GV I
Sbjct: 496 SPKNVLVFIDTKNRPDRFERQRKD------SPSRENPLEAQIVKEVVEKLLSMGVKEDWI 549
Query: 565 AVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
+ +PY QV +RE ++ A VEV ++D FQGRE + +IIS VRSN G +GFL D
Sbjct: 550 GIITPYDDQVNLIRELIE-----AKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLED 604
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV++TRA + + DSST+ + R + ++ G
Sbjct: 605 LRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKG 645
>gi|366987891|ref|XP_003673712.1| hypothetical protein NCAS_0A07730 [Naumovozyma castellii CBS 4309]
gi|342299575|emb|CCC67331.1| hypothetical protein NCAS_0A07730 [Naumovozyma castellii CBS 4309]
Length = 992
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 161/479 (33%), Positives = 228/479 (47%), Gaps = 73/479 (15%)
Query: 224 EVKLDGIMGKTF--------DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA 275
++ D M K F +DSQ A+ L +RPL +IQGPPGTGKT I+
Sbjct: 400 DITFDVPMPKQFSIPHFTQLNDSQSNAVQHVL--QRPLSLIQGPPGTGKTVTSATIVYHL 457
Query: 276 VQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKL 332
+ ERVLV AP+N AVD++ KL D+GL +VR+ +R + +V++ +L +V
Sbjct: 458 SKIHKERVLVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVA--- 514
Query: 333 ASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVV 392
K +LRK L +L + +L K K + T E+L+ A VV
Sbjct: 515 -------RSSKGELRKLL-------TLKEEVGELSASDTKKFVKLVRRTEAEILAKADVV 560
Query: 393 LATNTGAADPLIRRLDT-FDLV--------------------GKRCILAGDQCQLAPVIL 431
T GA D +RLDT F V K+ IL GD QL PVIL
Sbjct: 561 CCTCVGAGD---KRLDTKFRTVLIDESTQATEPECLIPIIKGAKQVILVGDHQQLGPVIL 617
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
RKA + G+ SL ER +L G + +L QYRMN ++ + S Y GSL + T+
Sbjct: 618 ERKAGDAGLKQSLFERLISL--GHIPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQ 675
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV 551
+ ++ F P I P++ YG E L GT S+ N EA +
Sbjct: 676 RTVPNSTFPWP--IHDVPMMFWAN---YG------REELSSNGT-SYLNRIEAMNCERII 723
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAV 606
L GV P I V +PY Q ++ + + D VEVA++D+FQGRE D +
Sbjct: 724 TKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKEMYVKVEVASVDAFQGREKDYI 783
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
I+S VR+N A+GFL D RR+NV +TRA + ++ + ++ N LL H R G
Sbjct: 784 ILSCVRANDQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLSKNILWNHLLLHFREKG 842
>gi|240102675|ref|YP_002958984.1| UvrD type DNA helicase [Thermococcus gammatolerans EJ3]
gi|239910229|gb|ACS33120.1| DNA helicase, putative [Thermococcus gammatolerans EJ3]
Length = 660
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 204/728 (28%), Positives = 326/728 (44%), Gaps = 159/728 (21%)
Query: 10 QSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
+L +F ++ L+ +ER AE+E + E+ + GR +++
Sbjct: 4 NEKLSKFIAKLKVLVEMERKAEIEAMRAEMRRL------------------SGREREKVG 45
Query: 70 DTICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
I L LG LV + G R T +S GD++ + S+ S + G
Sbjct: 46 RAILGLNGKVIGEELG-YFLVRY---GREREIKTEISVGDLIVI----SKRDPLKSDLVG 97
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V G+ I+VALE T + + VR+D A+ +T++R E + L+++
Sbjct: 98 TVVEKGK--RFITVALE------TVPEWALRGVRVDL---YANDITFKRWLENIEALRES 146
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
G A+ G +E SE ++ + SQ++AIA L
Sbjct: 147 GRK-------ALEFYLGLREPEE----------SEEVEFNPFDRSLNASQRRAIARALGS 189
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
+I GP GTGKT L E+I + V +G RVL TA +N AVDN+VE+L D GL +VRV
Sbjct: 190 P-DFFLIHGPFGTGKTRTLVELIRQEVARGHRVLATAESNVAVDNIVERLVDSGLKVVRV 248
Query: 310 GNPARISPAVASKSL-------------------GEIVKSKLASFVA---EFERKKSDLR 347
G+P+R+S A+ +L GE +K K +F ++ R +D
Sbjct: 249 GHPSRVSKALHETTLAYLMTQHELYGELRELRVIGENLKEKRDTFTKPAPKYRRGLTD-- 306
Query: 348 KDLRQCLKDDSLAAGIR----QLLKQLGKTLK-------------KKEKETVKEVLSSAQ 390
+Q L+ G R +L++++ + LK K E+ +E++ A
Sbjct: 307 ---KQILRLAERGIGTRGVPARLIREMAQWLKINEQVQKTFDDARKLEERIAREIIREAN 363
Query: 391 VVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVIL 431
VVL TN+ A ++ ++D+ +R +LAGD QL P IL
Sbjct: 364 VVLTTNSSAGLEVV-DYGSYDVAIIDEATQATIPSVLIPINRARRFVLAGDHKQLPPTIL 422
Query: 432 SRKALEGGIGVSLLERAATLHEGVL------ATKLTTQYRMNDAIASWASKEMYGGSLIS 485
S +A E + TL EG++ + LT QYRMN+ + + S+E Y G + +
Sbjct: 423 SERA---------KELSKTLFEGLIERYPWKSEMLTVQYRMNERLMEFPSREFYNGRIKA 473
Query: 486 SSTVASHLLVDTPFVKP----TWIT----QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS 537
+V + L D P W + L+ +DT E+ + GS
Sbjct: 474 DESVRNITLADLGVELPKGDDVWAEVLKPENVLVFVDT--------AKREDRFERQRYGS 525
Query: 538 FYNEG--EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD-LPEAAGVEVAT 594
E EA +V V L+ G+ P + V +PY Q R+ + LPE +EV T
Sbjct: 526 ESRENPLEARLVEEAVEGLLKLGIKPEWVGVITPYDDQ----RDLISSLLPEE--IEVKT 579
Query: 595 IDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFL 654
+D +QGRE + +++S VRSN G +GFL D RR+NV++TRA + + ++ DSST+ +
Sbjct: 580 VDGYQGREKEVIVLSFVRSNRKGELGFLKDLRRLNVSLTRAKRKLILIGDSSTLSSHPTY 639
Query: 655 ARLLRHIR 662
RL+ +R
Sbjct: 640 KRLVEFVR 647
>gi|255088141|ref|XP_002505993.1| predicted protein [Micromonas sp. RCC299]
gi|226521264|gb|ACO67251.1| predicted protein [Micromonas sp. RCC299]
Length = 812
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 149/443 (33%), Positives = 220/443 (49%), Gaps = 61/443 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + QQ +V+V AP+N AVD + EK+ GL +VR
Sbjct: 377 QRPLSLIQGPPGTGKTVTSATIVYQLAQQHLGQVIVCAPSNVAVDQLAEKIERTGLRVVR 436
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ AR VAS + L VA + ++ K L+Q LKD+ + +L
Sbjct: 437 LA--ARSREHVASP----VEHLTLHYQVAHLDSPETAEFKKLQQ-LKDE-----LGELSS 484
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------------- 411
+ K+ +++ +E++++A VV T GA DP RL F
Sbjct: 485 NDERRHKRLKRKIEREIIAAADVVCVTAVGAGDP---RLADFRFRQVLMDESTQATEPEC 541
Query: 412 -----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
+ K+ ++ GD CQL PV+ S+KA G+G S+ ER +L GV +L QYRM
Sbjct: 542 LIPLIMGAKQVVMVGDHCQLGPVVTSKKAARAGLGQSMFERLISL--GVQPIRLQVQYRM 599
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
+ ++ + S Y G+L + A LL VD P+ PT P++ S+
Sbjct: 600 HPCLSEFPSNAFYEGALQNGVAAADRLLTHVDFPWPNPT----SPMMFW---------SM 646
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
E + +GT S+ N EA V V L+ AGV P I V +PY Q ++ + +
Sbjct: 647 TGAEEISASGT-SYLNRAEAAGVEKVVTHLLRAGVDPGRIGVVTPYEGQRAYVSQHMTRA 705
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
A VEVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 706 GVLATRLYGEVEVASVDAFQGREKDFIILSCVRSNEKTGIGFLNDPRRLNVAMTRARSGL 765
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
++ + + LL H R
Sbjct: 766 VILGNPKVLSRQRLFHDLLNHFR 788
>gi|241949191|ref|XP_002417318.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223640656|emb|CAX44951.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 711
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 176/645 (27%), Positives = 298/645 (46%), Gaps = 89/645 (13%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVE---GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
I NL +V+ TGLGG ++ +++ + + +TL GD+V + S + +
Sbjct: 41 IINLQIVNVRTGLGGKTILELQLDPAFSDGEINTSTLRTGDIVKLAKMTSSASNQKLEKK 100
Query: 129 GFVHNLGEDGC-------------------TISVALESRHGDPTFSKLFGKSVRIDRIQ- 168
+ N E+ TIS++++ D + + + R+
Sbjct: 101 KPLKNHKEESQAQNQSDVGIEAVVIKVSTQTISISVDESTDDSKILQYYNNTNDSARMWL 160
Query: 169 -GLADTLTYERNCEALMLL------QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLAD 221
L +++TY+R + + KN +HK L G+ + + + N ++
Sbjct: 161 VKLTNSITYKRMISTMDKVLDMKESDKNDIHK---------ILLGESQYIPKSKSNGTSN 211
Query: 222 WSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER 281
+ + + + SQ++AI +N + II GPPGTGKT L E+I + +GE+
Sbjct: 212 NNHGE-NNFFNDQLNASQRQAIEFAINDSN-ITIIHGPPGTGKTYTLIELIQQLTSKGEK 269
Query: 282 VLVTAPTNAAVDNMVEKLSDVG--LNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEF 339
VLV P+N +VD ++E+L + + ++R+G+PAR+ SL + K+ + +
Sbjct: 270 VLVCGPSNISVDTILERLGNKYEPMKLIRIGHPARLLVKNLQHSLEILSKTYGREIINDI 329
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
+ + +++C K A + LK L K L+++E++ V E+L AQVV+AT G+
Sbjct: 330 SSEIQSVLTKIKKCKKYGERKA-LYSELKLLKKELRQRERKIVNELLVQAQVVVATLHGS 388
Query: 400 ADPLIRR-----------LDTF--DLVG-----------------KRCILAGDQCQLAPV 429
++ DT D V KR ++AGD QL P
Sbjct: 389 GSFELKNSVGNNDSSGMVFDTIIIDEVSQSLEPQCWIPLLLSNRFKRLVIAGDNMQLPPT 448
Query: 430 ILSRKALEGG----IGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMYGGSLI 484
I +K+ + +L +R +G KL QYRMN +I + S ++Y L
Sbjct: 449 IKKQKSNSSSSASILATTLFDRLVKHCQGDQYKKLLDVQYRMNKSIMQFPSMQLYDNQLK 508
Query: 485 SSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEA 544
+V LVD P V+ T + DT G E +D S YN+ E
Sbjct: 509 CDDSVRDISLVDLPGVEINDDTMTKCIWYDTE--GGEFPEQISESVD---GDSKYNDMEL 563
Query: 545 EIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG-----VEVATIDSFQ 599
+V H+ L+ GV P I V +PY AQVQ+L++++ A G +E++T+D FQ
Sbjct: 564 LVVKGHIKKLLSCGVRPQDIGVIAPYSAQVQNLKKQMGLGDGANGDKDGQIEISTVDGFQ 623
Query: 600 GREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
GRE + +I+++VRSN +GFL + RR+NVA+TR + + VV D
Sbjct: 624 GREKEVIILTLVRSNDSREIGFLSEQRRLNVAMTRPKRQLCVVGD 668
>gi|444911442|ref|ZP_21231617.1| Superfamily I DNA/RNA helicase [Cystobacter fuscus DSM 2262]
gi|444718200|gb|ELW59016.1| Superfamily I DNA/RNA helicase [Cystobacter fuscus DSM 2262]
Length = 273
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 153/252 (60%), Gaps = 20/252 (7%)
Query: 412 LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
L + +LAGD Q P ILS +A + G+ VSL ER H + L QYRMN AI
Sbjct: 15 LRAPKVVLAGDPQQFPPTILSPEAAKAGLAVSLFERLLADHGDGVKRMLREQYRMNTAIM 74
Query: 472 SWASKEMYGGSLISSSTVASHLLVD-----TPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
++ SKEMYGG L + +VA LVD TP P P+L LDT G
Sbjct: 75 TFPSKEMYGGELRAHPSVAGRTLVDVLPPETPGDFP------PVLYLDT------AGKGF 122
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPE 586
EE + TGS +N GEA+++V V L+ AG++P +AV +PY AQ LRER++ P
Sbjct: 123 EEEQE-KDTGSLFNTGEADLIVARVRELLAAGIAPRELAVITPYRAQAHALRERVE--PL 179
Query: 587 AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
+ VEV T+D+FQGRE DA+++S+VRSN+ G +GFL D RRMNVA+TRA +H+ VV DS+
Sbjct: 180 SPDVEVDTVDAFQGREKDAILVSLVRSNSEGQIGFLSDLRRMNVALTRARRHLFVVGDSA 239
Query: 647 TICHNTFLARLL 658
T+ + F AR +
Sbjct: 240 TLSGHAFYARFI 251
>gi|168016276|ref|XP_001760675.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688035|gb|EDQ74414.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1610
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 219/452 (48%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 759 QKPVSLIQGPPGTGKTVTSAAIVYHLAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 818
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERK------KSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ + KS+L K Q LKD+
Sbjct: 819 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTTDKSELHK--LQLLKDE----- 860
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+ +L K K ++ T +E+ SA V+ T GA DP RL F
Sbjct: 861 LGELSSSDEKKYKSLKRATEREISQSADVICCTCVGAGDP---RLANFRFRQVLVDESTQ 917
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 918 ATEPECLIPLVLGAKQLVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GVKPIRL 975
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ +++ + S Y G+L + T + LL F P + P+
Sbjct: 976 QVQYRMHPSLSEFPSNSFYEGTLQNGVTTSDRLLSQIDFPWP--VPNRPMFFY------- 1026
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ +G EE + +GT S+ N GEA V V + + +GV P+ I V +PY Q +
Sbjct: 1027 -VQMGQEE-ISASGT-SYLNRGEAGNVEKIVTTFLKSGVVPAQIGVITPYEGQRAYIVNN 1083
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 1084 MARNGSLRQQL-----YKEIEVASVDSFQGREKDFIIVSCVRSNEHQGIGFLNDPRRLNV 1138
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 1139 ALTRARFGIVILGNPKVLSKQPLWNTLLTHYK 1170
>gi|456865626|gb|EMF83960.1| AAA domain protein [Leptospira weilii serovar Topaz str. LT2116]
Length = 637
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 157/469 (33%), Positives = 236/469 (50%), Gaps = 65/469 (13%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G M ++SQ+KA AL + II GPPGTGKT L EI+++ V +G+RVLV+APT
Sbjct: 183 GRMTSNLNESQRKA-ALNAVLSEDVTIIHGPPGTGKTTTLTEIVSQLVAEGKRVLVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLR 347
++A D +VE +S G++++R+G+PARIS A +L ++ ++E+ R ++
Sbjct: 242 HSACDLLVESISTRGISVLRLGHPARISDAALHTTLDYKLFYHPDGKLLSEYRRDVIEIS 301
Query: 348 KDLRQCL-----KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
K ++ K+ + Q +K+L KT++ EK + ++SS VV++T +A
Sbjct: 302 KQAKKYKRNFGEKEREERKNLFQEVKELKKTIRSMEKGLIDSLVSSHPVVVSTPVASARS 361
Query: 403 LI--RRLD--TFD--------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
++ R+ D D L R ILAGD QL P + S K + +L
Sbjct: 362 VLEGRQFDFCVLDESSQGLEPAFWIPILKSDRVILAGDHKQLPPSLFSEK---NSLEFTL 418
Query: 445 LERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPT 503
E+AA L L QYRM D I+ + S E Y L S P
Sbjct: 419 FEKAAERLETSGRVFLLDIQYRMKDEISFFPSMEFYSNRLKSGRP------------GPE 466
Query: 504 WITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHVFSLI 555
I+ P P+G+ + +D AGT S N EA++ V L+
Sbjct: 467 RISNFP-----ETFPFGN----ALQWIDTAGTDSEEVAVDDSLTNPFEADLQVCLCTLLL 517
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG---VEVATIDSFQGREADAVIISMVR 612
S I V SPY AQV+ + E+L + AG + V+TIDSFQGRE +++ VR
Sbjct: 518 ENNWSEEEITVLSPYRAQVRLISEKLRE----AGLTKIGVSTIDSFQGRENRCILLGFVR 573
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
SN+ G GFL +SRR+NV +TRA + + DSST+ + FL+RL+R +
Sbjct: 574 SNSEGRSGFLKESRRINVGMTRAKDLLICIGDSSTLLEDPFLSRLIRFV 622
>gi|268566961|ref|XP_002639857.1| Hypothetical protein CBG12210 [Caenorhabditis briggsae]
Length = 615
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/457 (29%), Positives = 232/457 (50%), Gaps = 51/457 (11%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ +T + SQ+ A++ LN +R LL IQGPPGTGKT ++ EI+ + +++ +RVL+ APT+
Sbjct: 151 LPETLNPSQQAAVSAALNPQRNLLCIQGPPGTGKTRVIAEIVHQLLKKKKRVLICAPTHV 210
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASF-----VAEFERKKSD 345
AV N ++ VR I P K L I+ + F A+ E + +
Sbjct: 211 AVQN--------AMDAVRRRMCQDIPPETVQKELC-ILNNTRDEFQDHPSTAKLETMEKE 261
Query: 346 LRKDLR----------QCLK-----DDSLAAGIRQLLKQLGKTLKKK--EKETVKEVLSS 388
L + + +C+K S+ A R + LG + +K E + +V+
Sbjct: 262 LMRSNQKGQSTKLMAYECMKLRCSIYQSIYAPRRAIFSTLGTSSIQKLPEYDWKADVMIV 321
Query: 389 AQVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER- 447
+ T P + K+ +L GDQ QL ++LS KA+ G+SL+E+
Sbjct: 322 DEAAQCTEPSTWVPALT-----TPTCKKLVLVGDQKQLPAIVLSDKAVRANFGMSLMEKL 376
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT-PFVKPTWIT 506
A + + L QYRMN+ I W+++ Y L + S+V+ L D P + +I
Sbjct: 377 AEEFAKNNINILLNEQYRMNEKIMHWSNEHFYNNQLTAHSSVSDITLRDIYPKIPTNYIA 436
Query: 507 QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-AGVSPSAIA 565
P+ ++D + + +E D + S+ N GE +V ++V L+ GV+P IA
Sbjct: 437 NKPIFMIDMK----NFEDRSQESFD---SNSYSNTGELNVVSNYVIRLVTDVGVNPKDIA 489
Query: 566 VQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
V +PY +Q++ LR + + V+V T+D+FQG+E + +I +VR N G++GFL ++
Sbjct: 490 VIAPYYSQIEKLRNSI-----SFRVDVNTVDAFQGQEREVIIFCLVRDNDEGSIGFLKET 544
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVAITRA + +V +S + N + L R+++
Sbjct: 545 RRLNVAITRAKRQFVLVGNSDMLQRNRHIKSLYRYLK 581
>gi|365989598|ref|XP_003671629.1| hypothetical protein NDAI_0H02120 [Naumovozyma dairenensis CBS 421]
gi|343770402|emb|CCD26386.1| hypothetical protein NDAI_0H02120 [Naumovozyma dairenensis CBS 421]
Length = 993
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 161/479 (33%), Positives = 230/479 (48%), Gaps = 73/479 (15%)
Query: 224 EVKLDGIMGKTF--------DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA 275
++ D M K F ++SQ KA+ L +RPL +IQGPPGTGKT I+
Sbjct: 400 DITFDVPMPKQFSIPHFTQLNESQSKAVQHVL--QRPLSLIQGPPGTGKTVTSATIVYHL 457
Query: 276 VQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKL 332
+ ++VLV AP+N AVD++ KL D+GL +VR+ +R + +V++ +L +V
Sbjct: 458 TKIHKDKVLVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVARG- 516
Query: 333 ASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVV 392
K +LRK LR L + +L K K ++T E+L+ A VV
Sbjct: 517 ---------SKGELRKLLR-------LKEEVGELSASDTKRFVKLVRKTESEILAKADVV 560
Query: 393 LATNTGAADPLIRRLDT-FDLV--------------------GKRCILAGDQCQLAPVIL 431
T GA D +RLDT F V K+ IL GD QL PVIL
Sbjct: 561 CCTCVGAGD---KRLDTKFRTVLIDESTQATEPECLIPIVKGAKQVILVGDHKQLGPVIL 617
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
RKA + G+ SL ER +L G + +L QYRMN ++ + S Y GSL + T+
Sbjct: 618 ERKAGDAGLKQSLFERLISL--GHIPFRLEIQYRMNPYLSEFPSNMFYEGSLQNGVTIEQ 675
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV 551
+ D+ F P I P++ YG E L GT S+ N EA +
Sbjct: 676 RTVSDSTFPWP--IHGVPMMFWAN---YG------REELSSNGT-SYLNRIEAMNCERII 723
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAV 606
L GV P I V +PY Q ++ + + D VEVA++D+FQGRE D +
Sbjct: 724 TKLFKDGVKPEQIGVITPYEGQRAYILQYMQMNGAMDKDLYVKVEVASVDAFQGREKDYI 783
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
I+S VR+N A+GFL D RR+NV +TRA + ++ + ++ N LL H R G
Sbjct: 784 ILSCVRANDQQAIGFLRDPRRLNVGLTRAKYGLVILGNPMSLSRNLLWNHLLIHFREKG 842
>gi|337284021|ref|YP_004623495.1| DNA helicase [Pyrococcus yayanosii CH1]
gi|334899955|gb|AEH24223.1| DNA helicase [Pyrococcus yayanosii CH1]
Length = 656
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 195/649 (30%), Positives = 312/649 (48%), Gaps = 120/649 (18%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G LV + G R T +S GD+V + S+ S + G V G+ I+VAL
Sbjct: 58 GYFLVRY---GREREIKTEISVGDLVVI----SKRDPLKSDLVGTVVEKGK--RFITVAL 108
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
E T + K +R+D A+ +T+ R E L L++ G A+
Sbjct: 109 E------TVPEWALKGIRLDL---YANDITFRRWLENLDNLREGGRK-------ALEFYL 152
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
G +E E+++ ++ + K + SQKKA++L L +I GP GTGKT
Sbjct: 153 GLREP----EKSEPVEFEPI------DKRLNASQKKAVSLALGSS-DFFLIHGPFGTGKT 201
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E+I + V++G +VL TA +N AVDN+VE+L++ LN+VR+G+P+R+S + +L
Sbjct: 202 RTLAELIRQEVKRGNKVLATAESNVAVDNLVERLAE--LNVVRIGHPSRVSKHLHETTLA 259
Query: 326 -EIVKSKLASFVAEF-------ERKKSDLRKDL---RQCLKDDSL---------AAGI-R 364
++ + +L + E K+ K L R+ L D+ + A G+
Sbjct: 260 YQMTRHELYGELRELLVTAQGLAEKRDTYTKPLPKFRRGLSDNEILRLAERGIGARGVPA 319
Query: 365 QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+L++++ + +K K E+ +E++ A VVL TN+ AA ++ D FD
Sbjct: 320 RLIREMAEWIKLNRQVQKAFDEARKLEERIAREIIREADVVLTTNSSAALEILDVAD-FD 378
Query: 412 LVG-------------------KRCILAGDQCQLAPVILS--RKALEGGIGVSLLERAAT 450
+ +R ILAGD QL P ILS +AL + L+ER
Sbjct: 379 VAVIDEATQATIPSILIPINRVERFILAGDHRQLPPTILSLEAQALSKTLFEGLIERYPE 438
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP----TWIT 506
+ L QYRMN+ + ++ S+E Y G +I+ +V + L D +P W
Sbjct: 439 K-----SAMLNIQYRMNERLMAFPSREFYEGKIIADESVKNITLADLGVKEPGFSEPWAE 493
Query: 507 ----QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPS 562
+ L+ +DT + G+ S N EA+IV V LI GV P
Sbjct: 494 ILRPENVLVFIDTAHRHDKW------ERQRRGSESRENPLEAKIVATIVGKLIEMGVKPE 547
Query: 563 AIAVQSPYVAQVQHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
I V +PY Q R+ + ++PE VEV T+D +QGRE + +I+S+VRSN G +GF
Sbjct: 548 WIGVITPYDDQ----RDLISLNVPE--DVEVKTVDGYQGREKEVIILSLVRSNERGEIGF 601
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
L D RR+NV++TRA + + +V DS+T+ + RL+ ++ G++ A
Sbjct: 602 LRDLRRLNVSLTRAKRKLIIVGDSATLSSHPTYKRLVEFVKEKGKLVDA 650
>gi|389640681|ref|XP_003717973.1| regulator-nonsense transcripts 1 [Magnaporthe oryzae 70-15]
gi|351640526|gb|EHA48389.1| regulator-nonsense transcripts 1 [Magnaporthe oryzae 70-15]
gi|440471031|gb|ELQ40068.1| ATP-dependent helicase NAM7 [Magnaporthe oryzae Y34]
gi|440490268|gb|ELQ69843.1| ATP-dependent helicase NAM7 [Magnaporthe oryzae P131]
Length = 1105
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 147/437 (33%), Positives = 216/437 (49%), Gaps = 55/437 (12%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT II A G +VLV AP+N AVD + E++ GL +VR+
Sbjct: 467 PLSLIQGPPGTGKTVTSATIIYHLAKMNGSQVLVCAPSNVAVDQLCERVHRTGLKVVRLT 526
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+R E V+S + SF+A E+ + +D +L K L + + +L Q
Sbjct: 527 AKSR-----------EDVESSV-SFLALHEQVRMNDTNPEL---AKLQQLKSELGELSSQ 571
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
K K+ K +E+LS+A VV T GA DP + +L +++
Sbjct: 572 DEKKFKQLTKAAEREILSNADVVCCTCVGAGDPRLAKLKFRNVLIDESTQSAEPECMIPL 631
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
K+ +L GD QL PVI+++KA + G+ SL ER L G+ +L QYRM+ +
Sbjct: 632 VLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKL--GLTPIRLNVQYRMHPCL 689
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ + S Y GSL + T+ L D F P + P++ +LG EE +
Sbjct: 690 SEFPSNMFYEGSLQNGVTIQQRLRRDVDFPWP--VADMPMMFWS--------NLGNEE-I 738
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-----P 585
+GT S+ N EA V V AGV P I V +PY Q ++ + +
Sbjct: 739 SASGT-SYLNRTEASNVEKLVTRFFKAGVKPGDIGVVTPYEGQRSYIVSTMQNTGTFKKE 797
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA V ++ +
Sbjct: 798 SYKEVEVASVDAFQGREKDFIVLSCVRSNESQGIGFLSDPRRLNVALTRAKYGVVIIGNP 857
Query: 646 STICHNTFLARLLRHIR 662
+ + LL H R
Sbjct: 858 KVLSKHELWHHLLIHFR 874
>gi|398332764|ref|ZP_10517469.1| DNA and RNA helicase subunit [Leptospira alexanderi serovar Manhao
3 str. L 60]
Length = 637
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 156/495 (31%), Positives = 246/495 (49%), Gaps = 64/495 (12%)
Query: 204 LFGDKEDVTWLEENDLADWSEVKLDGIMGK---TFDDSQKKAIALGLNKKRPLLIIQGPP 260
L+ ++E + E+ DL E I+G+ + ++SQK A+ + + + II GPP
Sbjct: 155 LYVNRELLLGYEKPDLISIREADRSRILGRMNPSLNESQKNAVLHSVLSE-DVTIIHGPP 213
Query: 261 GTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVA 320
GTGKT L EI+++ V +RVLV+APT++A D +VE + G++++R+G+PARIS A
Sbjct: 214 GTGKTTTLTEIVSQLVADEKRVLVSAPTHSACDLLVESIFAKGISVLRLGHPARISDAAL 273
Query: 321 SKSLG-EIVKSKLASFVAEFERKKSDLRKDLRQCL-----KDDSLAAGIRQLLKQLGKTL 374
+L ++ ++E+ R ++ K ++ K+ + Q +K+L KT+
Sbjct: 274 HTTLDYKLFHHPDGKLLSEYRRDVIEISKQAKKYKRNFGEKEREERKNLFQEVKELKKTI 333
Query: 375 KKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD-------------------LVGK 415
+ E+ + ++SS V+++T +A ++ TFD L
Sbjct: 334 RSMERGLIDSLVSSHPVIVSTPVASARSVLEG-RTFDFCVLDESSQGLEPAFWIPILKSD 392
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWA 474
R ILAGD QL P + S K + +L E+AA L L TQYRM D I+S+
Sbjct: 393 RVILAGDHKQLPPSLFSEK---NSLEFTLFEKAAERLEMSGRVFLLDTQYRMKDEISSFP 449
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S E Y L S P I+ P P+G+ + +D AG
Sbjct: 450 SMEFYSNRLKSGRP------------GPERISNFP-----ETFPFGN----ALQWIDTAG 488
Query: 535 T--------GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPE 586
T S N EA++ VH L I + SPY AQV+ + E+L +
Sbjct: 489 TDSEEVIVDDSLINSFEADLQVHLCTLLQENNWPEEEITILSPYRAQVRLILEKLQEAG- 547
Query: 587 AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
+ ++V+TIDSFQGRE ++ VRSN+ G GFL +SRR+NV +TRA + + DSS
Sbjct: 548 FSKIQVSTIDSFQGRENRCILFGFVRSNSEGRSGFLKESRRINVGMTRAKDLLLCIGDSS 607
Query: 647 TICHNTFLARLLRHI 661
T+ + FL+RL+R +
Sbjct: 608 TLLEDPFLSRLIRFV 622
>gi|375152206|gb|AFA36561.1| putative DNA helicase, partial [Lolium perenne]
Length = 137
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/134 (73%), Positives = 114/134 (85%), Gaps = 2/134 (1%)
Query: 558 GVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
GV S IAVQSPY+AQVQ LRE+L++ P +GVEV+TIDSFQGREADAV++SMVRSN LG
Sbjct: 3 GVCSSEIAVQSPYIAQVQLLREKLEEYPGLSGVEVSTIDSFQGREADAVVLSMVRSNPLG 62
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGG 677
AVGF+GDSR MNVAITRA +HV VVCD+STICH+TFLARLLRHIR +G+VKH PGS G
Sbjct: 63 AVGFMGDSRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRHIRRYGQVKHVAPGSLDG 122
Query: 678 -SGLGMD-PMLPSI 689
SGLG + P LPSI
Sbjct: 123 VSGLGFNQPSLPSI 136
>gi|322706853|gb|EFY98432.1| Regulator of nonsense transcripts 1 [Metarhizium anisopliae ARSEF
23]
Length = 1083
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 150/453 (33%), Positives = 224/453 (49%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVD 293
+ SQ AI L K PL +IQGPPGTGKT II A G +VLV AP+N AVD
Sbjct: 449 LNQSQIDAIKSVLQK--PLSLIQGPPGTGKTVTSATIIYHLAKMSGNQVLVCAPSNVAVD 506
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ + L +VR+ +R E V+S + SF+A E+ + L + +
Sbjct: 507 QLCERIHNTNLKVVRLTAKSR-----------EDVESSV-SFLALHEQVR--LSEHNSEL 552
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
+K L + +L Q K K+ K +E+L++A VV T GA DP + ++ +++
Sbjct: 553 VKLSQLKNDVGELSSQDEKKFKQLTKAAEREILNNADVVCCTCVGAGDPRLSKMKFRNVL 612
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
K+ +L GD QL PVI+++KA + G+ SL ER L
Sbjct: 613 IDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLIKLQ-- 670
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+ +LTTQYRM+ ++ + S Y GSL + T L D F P I + P++
Sbjct: 671 LAPIRLTTQYRMHPCLSEFPSNMFYDGSLQNGITHEQRLRRDVEFPWP--IAETPMMFWS 728
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS I V +PY Q
Sbjct: 729 --------NLGNEE-ISTSGT-SYLNRTEASNVEKTVTRFFKAGVKPSEIGVITPYEGQR 778
Query: 575 QHLRERLDD-----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + + VEVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 779 SYIVTTMQNSGSFKKEYYKEVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLN 838
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LL H +
Sbjct: 839 VALTRAKYGLVILGNPKVLSKHELWHNLLVHFK 871
>gi|164661533|ref|XP_001731889.1| hypothetical protein MGL_1157 [Malassezia globosa CBS 7966]
gi|159105790|gb|EDP44675.1| hypothetical protein MGL_1157 [Malassezia globosa CBS 7966]
Length = 721
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 196/679 (28%), Positives = 313/679 (46%), Gaps = 118/679 (17%)
Query: 54 PIEFLVSHGRAPQELCDTICNLFVVSTSTGLGGMHLVLFR----VEGNHRLPPTTLSPGD 109
P L HG A + LFV S+ TG GG LV + + + L P T PGD
Sbjct: 46 PPRVLARHGLA-------LLGLFVASSRTGEGGKLLVELQYSTALHASPVLGPHTFRPGD 98
Query: 110 MVCVRVCDSRGACATSC---IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDR 166
+ + +S + ATSC ++ V+ + E +I +AL+ R + + R
Sbjct: 99 VCALEEHES--SKATSCTLSLRAVVYRVSE--TSIILALDERSA--SHEDHETDLPPLIR 152
Query: 167 IQGLADTLTYERNCEALMLLQK-NGLHKRNPSIA-----------AVVTLFGDKEDVTWL 214
I LA+ TY+R E L L + GL + A V +L G E W
Sbjct: 153 IVQLANEATYDRLVETLESLARVMGLPTQQDVPAPELELSAHAPRVVRSLLG-LETPAWR 211
Query: 215 EENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR 274
+E W ++ +D+Q+ AI+ L + L +I GPPGTGKT + E+I +
Sbjct: 212 KET--PAWIPIQ------PHLNDTQRGAISFALRSEH-LALIHGPPGTGKTTAVAELIVQ 262
Query: 275 --AVQQGERVLVTAPTNAAVDNMVEKLSDVGLN---------IVRVGNPARISPAVASKS 323
+ R+LV +N AVDN++E+++ + R+G+PAR+ P++ S +
Sbjct: 263 LATLDPKARILVCGASNLAVDNLLERITSPAYKDALARADARVTRIGHPARVLPSLTSAT 322
Query: 324 L---------GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL-------- 366
L G++V+ +A+ + E ++ R R K ++ L
Sbjct: 323 LDVQSRQSSEGQLVRD-VAAEIDELMQRLVPPRTGARAGNKSARNIPRVKGLERRKMWEQ 381
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFDLV----------- 413
+++L K +++++ VL +A+++++T GA R+LD FD+
Sbjct: 382 VRELRKEYRRRDRALSNTVLKNARIIMSTCHGAG---ARQLDDMQFDVCIIDEACQALEM 438
Query: 414 -----------GKRCILAGDQCQLAPVILSRKA-LEGGIG---------VSLLERAATLH 452
R L+GD QL P +++ L G G V++ +R ++
Sbjct: 439 SCWTPVLRLAPHGRVFLSGDHLQLPPTVMADAPRLPAGSGTLRPSASLEVTMFDRILDMY 498
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC-PLL 511
L+ QYRMN I ++ + ++Y G L++ + AS L D C PL+
Sbjct: 499 GEGCKAFLSVQYRMNREIMAFPNSQLYKGQLVAHESCASIRLTDLGVEGDDDDLFCAPLV 558
Query: 512 LLDTRLPYGSLSLGCEEHLDLA--GTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
L DT G E D A T S NE E +V+ H+ L+ G++P +IAV SP
Sbjct: 559 LYDT------TGAGMYEREDEAVLSTHSRVNENEVALVLRHMELLVEHGIAPESIAVLSP 612
Query: 570 YVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
Y AQV L +++ A VEV T+D QGRE + VI+S+VRSN +GFL DSRR+N
Sbjct: 613 YSAQVHLLSQQIRSA-YGARVEVGTVDGMQGREKEVVIVSLVRSNDEHQIGFLQDSRRLN 671
Query: 630 VAITRACKHVAVVCDSSTI 648
VA+TRA + + +V D+ T+
Sbjct: 672 VAMTRAKRQLVIVGDADTV 690
>gi|238878861|gb|EEQ42499.1| hypothetical protein CAWG_00711 [Candida albicans WO-1]
Length = 719
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 182/667 (27%), Positives = 300/667 (44%), Gaps = 103/667 (15%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG---NHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
I NL +V+ TGLGG ++ +++ + + +TL GD+V + S S +
Sbjct: 41 IINLQIVNIRTGLGGKTILELQLDSAFSDGEINTSTLRTGDIVKLAKMTSSALSNKSEKK 100
Query: 129 GFVHNLGEDGCT-------------------ISVALESRHGDPTFSKLFGKSVRIDRIQ- 168
N E+ T IS++++ D + + + R+
Sbjct: 101 KPSKNHKEESQTQDQSDVGIEAVVIKVSTQTISISVDESTDDSKILQYYNNTNDSARMWL 160
Query: 169 -GLADTLTYER------NCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLAD 221
L +++TY+R A+ KN +HK L G+ + + +
Sbjct: 161 VKLTNSITYKRMITTMDTVLAMKESDKNDIHK---------ILLGESQYIPKSNGTSNNN 211
Query: 222 WSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER 281
E+ + SQ++AI +N + II GPPGTGKT L E+I + +GE+
Sbjct: 212 NGEINF---FNDKLNASQRQAIDFAINDSN-ITIIHGPPGTGKTYTLIELIQQLTSKGEK 267
Query: 282 VLVTAPTNAAVDNMVEKLSDVG--LNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEF 339
VLV P+N +VD ++E+L D + ++R+G+PAR+ SL + K+ + E
Sbjct: 268 VLVCGPSNISVDTILERLGDKYELMKLIRIGHPARLLMKNLQHSLEILSKTYGRDIINEI 327
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
+ +++C K A + LK L K L+++E++ V E+L AQVV+AT G+
Sbjct: 328 LNDIQSVLTKIKKCKKYGERKA-LYSELKLLKKELRQRERKIVNELLVQAQVVVATLHGS 386
Query: 400 ADPLIRR-----------LDTF--DLVG-----------------KRCILAGDQCQLAPV 429
++ DT D V KR ++AGD QL P
Sbjct: 387 GSYELKNSVGTNNNEGIVFDTIIIDEVSQSLEPQCWIPLLLSNRFKRLVIAGDNMQLPPT 446
Query: 430 ILSRKALEGG----------IGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEM 478
I ++K+ + +L +R G KL QYRMN +I + S ++
Sbjct: 447 IKTQKSNSSSPSSSSSSASILATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQL 506
Query: 479 YGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF 538
Y L +V LVD P V+ T + DT+ G E +D S
Sbjct: 507 YDNQLKCDDSVREISLVDLPGVEINDDTMTKCIWYDTQ--GGEFPEQISESID---GDSK 561
Query: 539 YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---DLPEAAG------ 589
YN+ E +V H+ L+ +GV P I V +PY AQVQ+L++++ ++ +A
Sbjct: 562 YNDMELLVVKGHIKKLLSSGVQPQDIGVIAPYSAQVQNLKKQMGLGGEVGSSANGDKDGQ 621
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
+E++T+D FQGRE + +I+++VRSN +GFL + RR+NVA+TR + + VV D +
Sbjct: 622 IEISTVDGFQGREKEVIILTLVRSNDSREIGFLSEQRRLNVAMTRPKRQLCVVGDLELMN 681
Query: 650 H--NTFL 654
N FL
Sbjct: 682 QSGNKFL 688
>gi|452820756|gb|EME27794.1| endonuclease [Galdieria sulphuraria]
Length = 712
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 148/481 (30%), Positives = 245/481 (50%), Gaps = 61/481 (12%)
Query: 220 ADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
++W +++ D +++SQ+ A L ++ L +IQGPPGTGKT L +I+A VQ G
Sbjct: 253 SEWQKIRQDE---NDWNESQQTAWKNALERR--LTLIQGPPGTGKTKTLAKILASLVQLG 307
Query: 280 ER-VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE 338
+L +A T+ A DN++++L + +R+G PA I + SL +++ + + +
Sbjct: 308 RTPILASAYTHIATDNILDELERYNIPAIRIGKPANIHRNLWKYSLDSLLE-RDTRIIEK 366
Query: 339 FERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
E K + + L Q + ++ R K LG+ LK+ E KE+L +VL+T G
Sbjct: 367 RENLKKAMER-LAQPKRGKAIGLAHRDYSKSLGQ-LKQTEMIATKEILDKYPIVLSTCVG 424
Query: 399 AADPLIRRLDTFDLVG--------------------KRCILAGDQCQLAPVILSRKALEG 438
A + +++ + +F +V ++ ILAGD QL P IL+ +A E
Sbjct: 425 AGEEILKNI-SFQVVAIDEATQSHEPGLLIPIIKGCEQLILAGDHYQLPPTILNPEAAES 483
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
G+ VSL ER + GV L TQYRM+ +IA++ S+ Y G L+ S+ + P
Sbjct: 484 GLSVSLFERL--VRSGVEPYLLRTQYRMHPSIAAFPSQYFYHG-LLHSAPCTQSISNYFP 540
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG 558
+ P Q P+ + LG EE + GT S+ N E+++V+ + ++
Sbjct: 541 WPNP----QTPIAFIPV--------LG-EEWVTEQGT-SYCNPQESQVVIETISQIVENW 586
Query: 559 VSPS-----------AIAVQSPYVAQVQHLRERLD---DLPEAAGVEVATIDSFQGREAD 604
++ I + +PY Q++ + +R+D + VEV T+D FQGRE D
Sbjct: 587 MTAQNSNHTLQQSFPTIGIITPYAGQMRDIMDRMDRETSTEWLSYVEVKTVDGFQGREKD 646
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYF 664
+IIS VRSN ++GFL D RR+NVAITR+ + V+ +++T+ N R L I +
Sbjct: 647 IIIISTVRSNPSQSLGFLQDWRRLNVAITRSRSGLIVIGNANTLSRNDHWKRWLEWISHH 706
Query: 665 G 665
G
Sbjct: 707 G 707
>gi|171693713|ref|XP_001911781.1| hypothetical protein [Podospora anserina S mat+]
gi|170946805|emb|CAP73609.1| unnamed protein product [Podospora anserina S mat+]
Length = 1090
Score = 195 bits (496), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 142/436 (32%), Positives = 217/436 (49%), Gaps = 53/436 (12%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT II A +VLV AP+N AVD + E++ GL +VR+
Sbjct: 462 PLSLIQGPPGTGKTVTSATIIYHLARMNNSQVLVCAPSNVAVDQLCERIHRTGLKVVRLT 521
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQL 370
+R E V+S + SF+A E+ + L K + + L A +L Q
Sbjct: 522 AKSR-----------EDVESSV-SFLALHEQVR--LYKQSSELTNLNKLKAAAGELSSQD 567
Query: 371 GKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------------- 413
K K+ ++ +E+L+SA VV T GA DP + ++ +++
Sbjct: 568 EKRFKQLTRQAEREILNSADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLV 627
Query: 414 --GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
K+ +L GD QL PVI+++KA + G+ SL ER L+ ++ +L QYRM+ ++
Sbjct: 628 LGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLN--LVPIRLNVQYRMHPCLS 685
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
+ S Y GSL + T+ L D F P + + P++ +LG EE +
Sbjct: 686 EFPSNMFYEGSLQNGVTITERLRKDVDFPWP--VAETPMMFWS--------NLGNEE-IS 734
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-----PE 586
+GT S+ N EA V V AGV PS I V +PY Q ++ + +
Sbjct: 735 ASGT-SYLNRTEASNVEKIVTRFFKAGVKPSDIGVITPYEGQRSYIVSTMQNTGTFKKES 793
Query: 587 AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ +
Sbjct: 794 YKEVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLSDPRRLNVALTRAKYGLVIIGNPK 853
Query: 647 TICHNTFLARLLRHIR 662
+ + LL H +
Sbjct: 854 VLSKHELWHHLLVHFK 869
>gi|336372693|gb|EGO01032.1| hypothetical protein SERLA73DRAFT_105557 [Serpula lacrymans var.
lacrymans S7.3]
Length = 743
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 229/794 (28%), Positives = 333/794 (41%), Gaps = 186/794 (23%)
Query: 10 QSRLDEFTQRMSELLRIERDAELEFTQEEL-NAVPTPDENSDSSKPIEFLVSHGRAPQEL 68
+ +L F +R LL ERDAE+E + L N P + L G A
Sbjct: 4 EGQLSAFIERHRVLLAKERDAEIERSSLLLSNCGP------------KLLEQKGLA---- 47
Query: 69 CDTICNLFVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLS----PGDMVCVRVCDSRG 120
+ L VV + GLGG LV L R H PP T PGD+ + S
Sbjct: 48 ---LGGLGVVGVNIGLGGKTLVELERPAAYHSTVIFPPHTFRQGFMPGDLARIEENISLN 104
Query: 121 ACA-------------------TSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKS 161
A +G V+ + + I +A++S +L +
Sbjct: 105 GLAKKNTKGKKTAAPSSAESKNVQAAEGVVYKVSD--TRIVIAVDSSENSSDMLELPERC 162
Query: 162 VRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLAD 221
R+ LA+++TY+R + L L+K AV+ D E L+
Sbjct: 163 ----RVLKLANSVTYDRMDKTLNTLEK-----------AVIPSSRQANDKAQYE---LSQ 204
Query: 222 WSEVKLDGIMGKT----------FDDS----QKKAIALGLNKKRPLLIIQGPPGTGKTGL 267
+ V L GI + FDDS QK+A+ L + I GPPGTGKT
Sbjct: 205 LTRVLL-GITPPSPKLSVPDLQFFDDSLNPSQKEAVKFALESAE-VACIHGPPGTGKTHT 262
Query: 268 LKEIIAR------AVQQGERVLVTAPTNAAVDNMVEKL-------SDVGLNIVRVGNPAR 314
L EII + A R+L+ +N +VDN++E+L + L++ R+G+PAR
Sbjct: 263 LIEIIRQLTTVTPANPNANRILICGASNLSVDNILERLLALPAADKNAKLSVTRIGHPAR 322
Query: 315 ISP----------AVASKS----LGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLA 360
+ A +S L + VKS+L + + KK + + L+ +
Sbjct: 323 VMAHEGVLEATLEVKAGRSDQAALAKDVKSELEAALDVLSGKKKGAKGKAPRGLERKKMW 382
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------- 413
++ L K+ +++E VK VL +Q+VLAT A + TFD+V
Sbjct: 383 EDVKALRKEY----RQREGGVVKTVLGDSQIVLATCHSAGGRQLHN-HTFDVVLIDEATQ 437
Query: 414 ------------GKRCILAGDQCQLAPVILSRKALEGG---------------------- 439
K+ ILAGD QL P ILS E
Sbjct: 438 ALEAVCWIPIFKAKKLILAGDPLQLPPTILSLNKHEKKEKTAPIAKSQPQKQGQNKKSNS 497
Query: 440 -----------IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSST 488
+ V+L +R ++ + L QYRM+ I + SK +Y L S +
Sbjct: 498 PKKSGLRPPRTLEVTLFDRLEKMYGPGIKRMLNVQYRMHAQICQFPSKTLYSSRLKSHES 557
Query: 489 VASHLLVDTPFVKP------TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG---SFY 539
VASHLL D P K + P++ DT GCE + L G G S
Sbjct: 558 VASHLLHDLPGTKTDSEEEQKELLGTPVVFFDT--------AGCEYYERLEGDGDDGSRC 609
Query: 540 NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQ 599
NE E +V L+ AG+ PS IA+ +PY AQV L L + +E+ T+D Q
Sbjct: 610 NENEGTVVKQWTRKLVDAGILPSQIAIITPYQAQVTLLTSLLRPT-YGSDLEIGTVDGMQ 668
Query: 600 GREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH-NTFLARLL 658
GRE +AVIIS+VRSN VGFL + RR+NVA+TRA +H+ VV DSST+ H ++L + L
Sbjct: 669 GREKEAVIISLVRSNEKREVGFLKEKRRLNVAMTRARRHLCVVGDSSTVVHGGSYLKKWL 728
Query: 659 RHIRYFGRVKHAEP 672
+ V++A P
Sbjct: 729 VWLEANADVRYAGP 742
>gi|68474162|ref|XP_718790.1| hypothetical protein CaO19.6199 [Candida albicans SC5314]
gi|68474333|ref|XP_718706.1| hypothetical protein CaO19.13579 [Candida albicans SC5314]
gi|46440489|gb|EAK99794.1| hypothetical protein CaO19.13579 [Candida albicans SC5314]
gi|46440578|gb|EAK99882.1| hypothetical protein CaO19.6199 [Candida albicans SC5314]
Length = 719
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 182/667 (27%), Positives = 299/667 (44%), Gaps = 103/667 (15%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG---NHRLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
I NL +V+ TGLGG ++ + + + + +TL GD+V + S S +
Sbjct: 41 IINLQIVNIRTGLGGKTILELQFDSAFSDGEINTSTLRTGDIVKLAKMTSSALSNKSEKK 100
Query: 129 GFVHNLGEDGCT-------------------ISVALESRHGDPTFSKLFGKSVRIDRIQ- 168
N E+ T IS++++ D + + + R+
Sbjct: 101 KPSKNHKEESQTQDQSDVGIEAVVIKVSTQTISISVDESTDDSKILQYYNNTNDSARMWL 160
Query: 169 -GLADTLTYER------NCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLAD 221
L +++TY+R A+ KN +HK L G+ + + +
Sbjct: 161 VKLTNSITYKRMITTMDKVLAMKESDKNDIHK---------ILLGESQYIPKSNGTSNNN 211
Query: 222 WSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER 281
E+ + SQ++AI +N + II GPPGTGKT L E+I + +GE+
Sbjct: 212 NGEINF---FNDKLNASQRQAIDFAINDSN-ITIIHGPPGTGKTYTLIELIQQLTSKGEK 267
Query: 282 VLVTAPTNAAVDNMVEKLSDVG--LNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEF 339
VLV P+N +VD ++E+L D + ++R+G+PAR+ SL + K+ + E
Sbjct: 268 VLVCGPSNISVDTILERLGDKYEPMKLIRIGHPARLLMKNLQHSLEILSKTYGRDIINEI 327
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
+ +++C K A + LK L K L+++E++ V E+L AQVV+AT G+
Sbjct: 328 LNDIQSVLTKIKKCKKYGERKA-LYSELKLLKKELRQRERKIVNELLVQAQVVVATLHGS 386
Query: 400 ADPLIRR-----------LDTF--DLVG-----------------KRCILAGDQCQLAPV 429
++ DT D V KR ++AGD QL P
Sbjct: 387 GSYELKNSVGTNNNEGIVFDTIIIDEVSQSLEPQCWIPLLLSNRFKRLVIAGDNMQLPPT 446
Query: 430 ILSRKALEGG----------IGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEM 478
I ++K+ + +L +R G KL QYRMN +I + S ++
Sbjct: 447 IKTQKSNSSSPSSSSSSASILATTLFDRLMKHCHGEKYKKLLDVQYRMNKSIMQFPSMQL 506
Query: 479 YGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF 538
Y L +V LVD P V+ T + DT+ G E +D S
Sbjct: 507 YDNQLKCDDSVREISLVDLPGVEINDDTMTKCIWYDTQ--GGEFPEQISESID---GDSK 561
Query: 539 YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---DLPEAAG------ 589
YN+ E +V H+ L+ +GV P I V +PY AQVQ+L++++ ++ +A
Sbjct: 562 YNDMELLVVKGHIKKLLSSGVQPQDIGVIAPYSAQVQNLKKQMGLGGEVGSSANGDKDGQ 621
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
+E++T+D FQGRE + +I+++VRSN +GFL + RR+NVA+TR + + VV D +
Sbjct: 622 IEISTVDGFQGREKEVIILTLVRSNDSREIGFLSEQRRLNVAMTRPKRQLCVVGDLELMN 681
Query: 650 H--NTFL 654
N FL
Sbjct: 682 QSGNKFL 688
>gi|322701174|gb|EFY92925.1| Regulator of nonsense transcripts 1 [Metarhizium acridum CQMa 102]
Length = 1083
Score = 195 bits (495), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 150/453 (33%), Positives = 223/453 (49%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVD 293
+ SQ AI L K PL +IQGPPGTGKT II A G +VLV AP+N AVD
Sbjct: 449 LNQSQVDAIKSVLQK--PLSLIQGPPGTGKTVTSATIIYHLAKMSGNQVLVCAPSNVAVD 506
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ L +VR+ +R E V+S + SF+A E+ + L + +
Sbjct: 507 QLCERIHRTNLKVVRLTAKSR-----------EDVESSV-SFLALHEQVR--LSEHNSEL 552
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
+K L + +L Q K K+ K +E+L++A VV T GA DP + ++ +++
Sbjct: 553 VKLSQLKNDVGELSSQDEKKFKQLTKAAEREILNNADVVCCTCVGAGDPRLSKMKFRNVL 612
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
K+ +L GD QL PVI+++KA + G+ SL ER L
Sbjct: 613 IDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLIKLQ-- 670
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+ +LTTQYRM+ ++ + S Y GSL + T L D F P I + P++
Sbjct: 671 LAPIRLTTQYRMHPCLSEFPSNMFYDGSLQNGITHEQRLRKDVDFPWP--IAETPMMFWS 728
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS I V +PY Q
Sbjct: 729 --------NLGNEE-ISTSGT-SYLNRTEASNVEKTVTRFFKAGVKPSEIGVITPYEGQR 778
Query: 575 QHLRERLDD-----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + + VEVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 779 SYIVTTMQNSGTYKKEYYKEVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLN 838
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LL H +
Sbjct: 839 VALTRAKYGLVILGNPKVLSKHELWHNLLVHFK 871
>gi|15679629|ref|NP_276746.1| transcriptional control factor (enhancer-binding protein)
[Methanothermobacter thermautotrophicus str. Delta H]
gi|2622761|gb|AAB86107.1| transcriptional control factor (enhancer-binding protein)
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 642
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 200/644 (31%), Positives = 297/644 (46%), Gaps = 113/644 (17%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G HLV + G T +S GD+V + SRG S + G V G+ + VAL
Sbjct: 42 GFHLVKY---GRRDPIDTQISVGDLVLI----SRGNPLRSDLTGTVAMKGKR--FLVVAL 92
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
E G K+VRID A+ +T++R + L +N L + L
Sbjct: 93 EHVPG------WALKNVRIDL---YANDVTFQRMIDNLKSPTRNVLR-------VLGFLC 136
Query: 206 GDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
G ++ + D+ D+ V + ++SQ+ AI + L + +I GP GTGKT
Sbjct: 137 GTEKPSDGV---DVVDFQAVDPE------LNESQRDAIRMALGSE-DFFLIHGPFGTGKT 186
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG 325
L E+I + V +G RVLVTA +NAAVDN++E ++ + VR+G+P R+S ++L
Sbjct: 187 RTLHELIRQEVMRGSRVLVTAESNAAVDNLLEGIAG-HVKCVRLGHPQRVSRENLRETLA 245
Query: 326 -EIVKSKLASFVAEFERKKSDLRKD----------LRQCLKDDSL---------AAGI-- 363
+I S V E++ K +L ++ +R+ L D + A GI
Sbjct: 246 YKIENHPEYSKVREYQEKIDELIEERERHQKPTPQIRRGLSDTQILINATKRRGARGISP 305
Query: 364 ------------RQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q + L L++ E +L +QVVL+TN+ AA I L FD
Sbjct: 306 NVMISMARWIETNQRIDDLHSKLQEAEMRIADRILRESQVVLSTNSSAALEYIDGL-RFD 364
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
+ R ILAGD QL P ILSR A E + +L E H
Sbjct: 365 VAIVDEASQATIPSILIPLARAPRFILAGDHRQLPPTILSRDASE--LERTLFEELIKRH 422
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS----HLLVDTPF--VKPTWIT 506
G + L QYRM+ AI + ++E Y G + + ++ ++ D P +
Sbjct: 423 PG-RSRMLNCQYRMHPAIMEFPNREFYDGRIRAHPSLEDISIRDIIEDVPDSDICQKLAD 481
Query: 507 QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAV 566
P+L +DT S GCE L G+ S N EA++ V SL+ GV P I +
Sbjct: 482 PDPVLFIDT-----SGLDGCERRL--KGSTSIQNPLEADLAVIISRSLMRMGVKPEEIGI 534
Query: 567 QSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
+PY QV + +D VEV ++D FQGRE D +IISMVRSN G++GFL D R
Sbjct: 535 ITPYDDQVDLISSMID-------VEVNSVDGFQGREKDVIIISMVRSNRNGSIGFLKDLR 587
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
R+NV++TRA + + ++ DS T+ + RL R G + A
Sbjct: 588 RLNVSLTRARRKLIIIGDSRTLSAHPSYRRLTEFCRKRGFLDEA 631
>gi|224373108|ref|YP_002607480.1| putative DNA helicase [Nautilia profundicola AmH]
gi|223589915|gb|ACM93651.1| putative DNA helicase [Nautilia profundicola AmH]
Length = 648
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 195/718 (27%), Positives = 325/718 (45%), Gaps = 144/718 (20%)
Query: 15 EFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICN 74
E+ +EL+ ER AE EF LN + N + GRA L
Sbjct: 9 EYVDYFNELIEKERKAEKEF---HLNEIKRLSGNERQKR--------GRAVLGLRMKFVG 57
Query: 75 LFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNL 134
F + ++R N+ +P + GD+V V S+G + V +
Sbjct: 58 EF----------LDFKIYRFNRNN-MPDHQIKVGDIVLV----SKGEPLKFNQEATVSGV 102
Query: 135 GEDGCTISVALESRHGDPTF-SKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHK 193
G++ +E +P F SKL+ R+ + +T++R +AL ++
Sbjct: 103 GKN------FIEVYSKEPIFRSKLY-------RLDLFVNDITFKRMKKALNEVENGKWKM 149
Query: 194 RNPSIAAVVTLFGDKED--VTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
N V L G KE V E++D+ +DSQ A++ +N
Sbjct: 150 EN----GVDVLLGKKEPNVVEAQEKSDI---------------LNDSQNIALSKSINS-- 188
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+ +I GPPGTGKT L E+I + + G+++LV+A +N AVDN++EKL D N+VR+G+
Sbjct: 189 DVFLIHGPPGTGKTTTLAEVIKKHI--GKKLLVSADSNVAVDNLLEKLKD--FNVVRIGH 244
Query: 312 PARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLRK-----------DLRQCLKDDSL 359
PA++ + SL I + K + + +K DL+ R+ L D+ +
Sbjct: 245 PAKMDSKLMKYSLDVRIRRDKRYKEIEKIIKKIDDLKYLQEKKYKKPTPGRRRGLSDEEI 304
Query: 360 ---------AAGI-RQLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATN 396
A G+ ++ +K++ + LK KK +E + ++L +AQ+V ATN
Sbjct: 305 LKYAKEGKGARGVLKEWMKEMAEWLKIQKNINKLFDEKNKKTQEIMDDILENAQIVFATN 364
Query: 397 TGAADPLI--RRLDTFDL----------------VGKRCILAGDQCQLAPVILSRKALEG 438
+ + R DT + GK+ I AGD QL P ILS +
Sbjct: 365 SACGGEFLEEREFDTVFIDEAAQAMEPSTLIPMIKGKQIIFAGDHKQLPPTILSN---DE 421
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+ VSL ER + L+ + T L QYRMN+ I + S + Y + + + + + D
Sbjct: 422 RLKVSLFERFSELYPKAVHT-LGIQYRMNEKINEFPSCKFYDCKVKTYEEIKNITIKDLN 480
Query: 499 FVKP--TWITQCPLLLLDTRLPYGSLSLGCEEHLDLA--GTGSFYNEGEAEIVVHHVFSL 554
++P + P++ +DT C + ++ + + S YN EAE VV V L
Sbjct: 481 -IQPDSEYGDYEPVVFIDT----------CGKFMEKSKKDSPSKYNPKEAEFVVSLVEKL 529
Query: 555 ICAGVSPSAIAVQSPYVAQVQHLRE----RLDDLPEAAGVEVATIDSFQGREADAVIISM 610
+ G I + +PY +++++ L D + +EV ++D FQGRE + +I+S+
Sbjct: 530 LKNGAKEEHIGIITPYKDHEEYIKKVISSHLHDFTTSL-LEVKSVDGFQGREKEIIILSL 588
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVK 668
VR+N +GFL D RR+NVAITRA + + ++ D+ T+ N L+ +I+ G K
Sbjct: 589 VRANEKEEIGFLSDIRRLNVAITRAKRKLVIIGDAKTLLVNDTYKNLIEYIKKNGVYK 646
>gi|397651076|ref|YP_006491657.1| dna2-nam7 helicase family protein [Pyrococcus furiosus COM1]
gi|393188667|gb|AFN03365.1| dna2-nam7 helicase family protein [Pyrococcus furiosus COM1]
Length = 655
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 195/651 (29%), Positives = 309/651 (47%), Gaps = 111/651 (17%)
Query: 77 VVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
++S + + G L F V+ G ++ T +S GD+V + S+ S + G V G
Sbjct: 44 ILSLNGKIVGEELGYFLVKYGRNKEIKTEISVGDLVVI----SKRDPLKSDLLGTVVEKG 99
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
+ I VALE T + + VRID A+ +T++R E L ++K G
Sbjct: 100 K--RFIVVALE------TVPEWALRDVRIDL---YANDITFKRWIENLDRVRKAG----- 143
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
K +L ++ + EV + K+ + SQ+KAIA L + +
Sbjct: 144 -----------KKALEFYLGLDEPSQGEEVSFEP-FDKSLNPSQRKAIAKALGSE-DFFL 190
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARI 315
I GP GTGKT L E+I + V++G +VL TA +N AVDN+VE+L+ G+ IVRVG+P+R+
Sbjct: 191 IHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLAKDGVKIVRVGHPSRV 250
Query: 316 SPAVASKSL----------GE-----IVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS 358
S + +L GE ++ LA + + R+ L + +K
Sbjct: 251 SRHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDAEIIKLAE 310
Query: 359 LAAGIR----QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAAD 401
G R +L+K++ + +K K E+ ++++ A VVL TN+ AA
Sbjct: 311 KGRGARGLSARLIKEMAEWIKLNRQVQKAFEDARKLEERIARDIIREADVVLTTNSSAAL 370
Query: 402 PLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGV 442
++ D +D+ R ILAGD QL P ILS +A E
Sbjct: 371 DVVDATD-YDVAIIDEATQATIPSILIPLNKVDRFILAGDHKQLPPTILSLEAQE----- 424
Query: 443 SLLERAATLHEGVL------ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ TL EG++ + LT QYRMN+ I + S+E Y G +++ +V + L D
Sbjct: 425 ----LSHTLFEGLIEKYPWKSEMLTIQYRMNERIMEFPSREFYDGRIVADESVKNITLAD 480
Query: 497 TPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI 555
V + I + L + + + L G+ S N EA+IV V L+
Sbjct: 481 LGIKVNASGIWRDILDPNNVLVFIDTCMLENRFERQRRGSESRENPLEAKIVSKIVEKLL 540
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
+GV + V +PY Q R+ + ++PE VEV T+D +QGRE + +I+S VRSN
Sbjct: 541 ESGVKAEMMGVITPYDDQ----RDLISLNVPEE--VEVKTVDGYQGREKEVIILSFVRSN 594
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
G +GFL D RR+NV++TRA + + ++ DSST+ + RL+ H+R G
Sbjct: 595 KAGEIGFLKDLRRLNVSLTRAKRKLIMIGDSSTLSSHETYRRLIEHVREKG 645
>gi|363749513|ref|XP_003644974.1| hypothetical protein Ecym_2426 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888607|gb|AET38157.1| Hypothetical protein Ecym_2426 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1002
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 228/457 (49%), Gaps = 65/457 (14%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMV 296
SQK AI L +RPL +IQGPPGTGKT II + ER+LV AP+N AVD++
Sbjct: 422 SQKNAIKHVL--QRPLSLIQGPPGTGKTVTSATIIYHLSKMHKERLLVCAPSNTAVDHLA 479
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
KL D+GL +VR+ +R + +V+ +L ++K + +L+K LR L
Sbjct: 480 AKLRDLGLKVVRLTAKSREDVESSVSDLALHNLIK----------RSAQGELKKLLR--L 527
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-FDLV 413
K+D+ R+ + K ++K E +L A VV T GA D +RLD+ F V
Sbjct: 528 KEDAGELSARET-RLFAKLVRKNESA----ILKKADVVCCTCVGAGD---KRLDSKFRTV 579
Query: 414 --------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
K+ IL GD QL PVIL RKA G+ SL E+ +L
Sbjct: 580 LIDESTQASEPECLIPVVKGTKQVILVGDHQQLGPVILDRKAGNAGLKQSLFEKLVSL-- 637
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
G + +L QYRMN ++ + S Y G+L + TV ++++ F P I+ P++
Sbjct: 638 GHVPIRLEVQYRMNPYLSEFPSNMFYEGTLQNGVTVEQRTILESSFPWP--ISDIPMMFW 695
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
YG E + GT S+ N EA + L GV P+ I V +PY Q
Sbjct: 696 AN---YG------REEISANGT-SYLNRIEAINCERIITRLFKDGVKPAQIGVITPYEGQ 745
Query: 574 VQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
++ + + D VEV ++D+FQGRE D +I+S VR+N ++GFL D RR+
Sbjct: 746 RAYIVQYMQMNGSMDKDMYMTVEVGSVDAFQGREKDYIILSCVRANDHQSIGFLVDPRRL 805
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NVA+TRA +A++ + +++ N LL H R G
Sbjct: 806 NVALTRAKYGLAILGNPTSLFRNRLWNHLLIHFREKG 842
>gi|444316488|ref|XP_004178901.1| hypothetical protein TBLA_0B05540 [Tetrapisispora blattae CBS 6284]
gi|387511941|emb|CCH59382.1| hypothetical protein TBLA_0B05540 [Tetrapisispora blattae CBS 6284]
Length = 1056
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 158/460 (34%), Positives = 218/460 (47%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + ER+LV AP+N AVD
Sbjct: 480 LNSSQTNAVRNVLQK--PLSLIQGPPGTGKTVTSATIIYHLSKLHSERILVCAPSNVAVD 537
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V+ +L +V K +LRK LR
Sbjct: 538 HLATKLRDLGLKVVRLTAKSREDVESSVSDLALHNLVA----------RSSKGELRKLLR 587
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
L + +L K K ++T E+L A VV T GA D +RLDT F
Sbjct: 588 -------LKEEVGELSANDTKKFVKLVRKTESEILKKADVVCCTCVGAGD---KRLDTKF 637
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 638 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAGDAGLKQSLFERLIS 697
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + + F P I P+
Sbjct: 698 L--GHVPIRLEVQYRMNPFLSEFPSNMFYEGSLQNGVTLDQRTVPTSTFPWP--IHDVPM 753
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT S+ N EA + L GV P I V +PY
Sbjct: 754 MFWAN---YG------REEISANGT-SYLNRIEAMNCERVITRLFKDGVKPEQIGVITPY 803
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 804 EGQRAYILQYMQMNGTLDKDLYINVEVASVDAFQGREKDYIILSCVRANEQQAIGFLSDP 863
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RRMNV +TRA + V+ + ++ N LL H R G
Sbjct: 864 RRMNVGLTRAKYGLVVLGNPRSLSRNILWNHLLIHFRQKG 903
>gi|365759093|gb|EHN00906.1| Nam7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1033
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 471 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 528
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 529 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 578
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 579 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 628
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 629 RTVLIDESTQASEPECLIPIVKGAKQAILVGDHQQLGPVILERKAADAGLKQSLFERLIS 688
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 689 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 744
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 745 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 794
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 795 EGQRAYILQYMQMNGSLDKDLYINVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 854
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 855 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 894
>gi|217076667|ref|YP_002334383.1| DNA helicase [Thermosipho africanus TCF52B]
gi|217036520|gb|ACJ75042.1| DNA helicase, putative [Thermosipho africanus TCF52B]
Length = 639
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 182/642 (28%), Positives = 302/642 (47%), Gaps = 123/642 (19%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G++L+ F G ++ T ++ GD V + ++G +D + V
Sbjct: 55 GLYLIKF---GRSKIIETEINVGDEVLIN--KNKGKVR------------DDFKGVVVEK 97
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
SR + KL KS + RI A +TY+R + L L +NG
Sbjct: 98 GSRFIVVSLDKLLPKSFKEVRIDLYASDVTYKRQIDNLKNLSENG--------------- 142
Query: 206 GDKEDVTWLEENDLADWSEVKLDGI-------MGKTFDDSQKKAIALGLNKKRPLLIIQG 258
K+ ++++ ++K D I K + SQK +I+ L+ K +I G
Sbjct: 143 --KKVLSYI-------LKDIKFDDIKKIDFKPFDKNLNYSQKLSISKALSSKN-FFLIHG 192
Query: 259 PPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPA 318
P GTGKT L E I + V++G++VLV+A +N AVDN+VE+LS+ ++ VR+G+P+R+S
Sbjct: 193 PFGTGKTRTLVEYILQEVKRGKKVLVSADSNMAVDNLVERLSE-KVSHVRIGHPSRVSKK 251
Query: 319 VASKS-LGEIVKSKLASFVAEFERKKSDL---RKDLRQCLKDDSLAAGIRQLLK--QLGK 372
+ S + L +I K K + + + + S+L R+ ++ ++ Q+LK + GK
Sbjct: 252 LLSSTLLFKIEKHKRYKELYKLKEEFSNLIEKREKFQKPIQKWRRGLSDEQILKLSKEGK 311
Query: 373 TLK----------------------------KKEKETVKEVLSSAQVVLATNTGAADPLI 404
T + K E+E K+++ ++ VV +TN+ + ++
Sbjct: 312 TTRGIPLKMINAMAEWITLNNKIEKIKEEMEKLEEEISKDIIENSSVVFSTNSSSYSEIL 371
Query: 405 RRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
+ + FD+V GK+ +LAGD QL P I+S KA E + ++L
Sbjct: 372 KGFE-FDVVVIDEAAQTTIPSVLIPLSKGKKFVLAGDHKQLPPTIISEKAKE--LSITLF 428
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI 505
E + + L QYRMN+ I + +KE Y G L S + + L D F I
Sbjct: 429 EILVDKYPH-MKELLNIQYRMNEKIMEFPNKEFYNGKL--KSGIGNITLKDLGFEGSDEI 485
Query: 506 T--QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA 563
T + ++ +DT+ S + + S++NE EA IV V + G++
Sbjct: 486 TKPENTIIFIDTK------SRKNKTENQKKDSTSYFNELEANIVKDIVEKFLKLGLNREY 539
Query: 564 IAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
I V +PY QV ++ GVEV T+D FQGRE + +IIS VRSN +GFL
Sbjct: 540 IGVITPYDDQVDLIKSF------NLGVEVNTVDGFQGREKEVIIISFVRSNQRKELGFLT 593
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
D RR+NV+ITRA + + + DSST+ ++ + + ++ G
Sbjct: 594 DLRRLNVSITRAKRKLICIGDSSTLENHPTYKKFIEFVKNKG 635
>gi|359726451|ref|ZP_09265147.1| DNA and RNA helicase subunit [Leptospira weilii str. 2006001855]
Length = 637
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 156/469 (33%), Positives = 234/469 (49%), Gaps = 65/469 (13%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G M ++SQ+KA A+ + II GPPGTGKT L EII++ V +G+R+LV+APT
Sbjct: 183 GRMTGNLNESQRKA-AIKAVLSEDVTIIHGPPGTGKTTTLTEIISQLVAEGKRILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLR 347
++A D +VE +S G+ ++R+G+PARIS A +L ++ ++E+ R ++
Sbjct: 242 HSACDLLVESVSTRGIPVLRLGHPARISDAALHATLDYKLFHHPDGKLLSEYRRDVIEIS 301
Query: 348 KDLRQCL-----KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
K ++ K+ + Q +K+L KT++ EK + ++S VV++T +A
Sbjct: 302 KQAKKYKRNFGEKEKEERKNLFQEVKELKKTIRSMEKGLIDSLVSFHPVVVSTPVASARS 361
Query: 403 LI--RRLD--TFD--------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
++ R+ D D L R ILAGD QL P + S K + +L
Sbjct: 362 VLEGRQFDFCVLDESSQGLEPAFWIPILKSDRVILAGDHKQLPPSLFSEK---NSLEFTL 418
Query: 445 LERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPT 503
E+AA L L TQYRM D I+ + S E Y L S P
Sbjct: 419 FEKAAERLETSGRVFLLDTQYRMKDEISFFPSMEFYSNRLKSGRP------------GPE 466
Query: 504 WITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHVFSLI 555
I+ P P+G+ + +D AGT S N EA++ V L
Sbjct: 467 RISNFP-----ETFPFGN----ALQWIDTAGTDSEEVAVDDSLTNPFEADLQVRLCTLLR 517
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG---VEVATIDSFQGREADAVIISMVR 612
S I V SPY AQV+ + E+L + AG + V+TIDSFQGRE +++ VR
Sbjct: 518 ENNWSEEEITVLSPYRAQVRLISEKLRE----AGLTKIGVSTIDSFQGRENRCILLGFVR 573
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
SN+ G GFL +SRR+NV +TRA + + DSST+ + FL+RL+R +
Sbjct: 574 SNSEGRSGFLKESRRINVGMTRAKDLLLCIGDSSTLLEDPFLSRLIRFV 622
>gi|401624314|gb|EJS42376.1| nam7p [Saccharomyces arboricola H-6]
Length = 971
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHRDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTIPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|255575790|ref|XP_002528794.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
gi|223531797|gb|EEF33616.1| nonsense-mediated mRNA decay protein, putative [Ricinus communis]
Length = 1280
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 215/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RP+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 509 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 568
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 569 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 611
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+ SA V+ T GA DP RL F
Sbjct: 612 -GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP---RLANFRFRQVLIDESTQ 667
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ IL GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 668 ATEPECLIPLVLGAKQVILVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GVKPIRL 725
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ +++ + S Y G+L + TV F P + P+
Sbjct: 726 QVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWP--VPNRPMFFY------- 776
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 777 -VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNY 833
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 834 MSRNGALRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 888
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 889 ALTRARYGIVILGNPKVLSKQPLWNSLLTHYK 920
>gi|151946238|gb|EDN64469.1| nuclear accommodation of mitochondria [Saccharomyces cerevisiae
YJM789]
Length = 971
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|349580361|dbj|GAA25521.1| K7_Nam7p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 971
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|6323726|ref|NP_013797.1| ATP-dependent RNA helicase NAM7 [Saccharomyces cerevisiae S288c]
gi|400350|sp|P30771.1|NAM7_YEAST RecName: Full=ATP-dependent helicase NAM7; AltName:
Full=Nonsense-mediated mRNA decay protein 1; AltName:
Full=Nuclear accommodation of mitochondria 7 protein;
AltName: Full=Up-frameshift suppressor 1
gi|4023|emb|CAA44266.1| helicase [Saccharomyces cerevisiae]
gi|173142|gb|AAA35197.1| zinc finger protein [Saccharomyces cerevisiae]
gi|807962|emb|CAA89226.1| Nam7p [Saccharomyces cerevisiae]
gi|207342353|gb|EDZ70140.1| YMR080Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259148654|emb|CAY81899.1| Nam7p [Saccharomyces cerevisiae EC1118]
gi|285814083|tpg|DAA09978.1| TPA: ATP-dependent RNA helicase NAM7 [Saccharomyces cerevisiae
S288c]
gi|323353063|gb|EGA85363.1| Nam7p [Saccharomyces cerevisiae VL3]
gi|392297240|gb|EIW08340.1| Nam7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 971
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|190408311|gb|EDV11576.1| helicase [Saccharomyces cerevisiae RM11-1a]
Length = 971
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|9759443|dbj|BAB10240.1| prematurely terminated mRNA decay factor-like protein [Arabidopsis
thaliana]
Length = 1235
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 216/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 499 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 558
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 559 LCAKSR-----------EAVSSPVEYLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 601
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+ SA V+ T GAAD RL F
Sbjct: 602 -GELSSSDEKKYKNLKRATEREITQSADVICCTCVGAAD---LRLSNFRFRQVLIDESTQ 657
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER TL G+ +L
Sbjct: 658 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL--GIKPIRL 715
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ A++ + S Y G+L + T+ F P + P+
Sbjct: 716 QVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWP--VPNRPMFFY------- 766
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ LG EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 767 -VQLGQEE-ISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNY 823
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 824 MARNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 878
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 879 ALTRARYGIVILGNPKVLSKQPLWNGLLTHYK 910
>gi|323347166|gb|EGA81441.1| Nam7p [Saccharomyces cerevisiae Lalvin QA23]
Length = 971
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASXPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|19569060|gb|AAL92018.1| UPF1 [Arabidopsis thaliana]
Length = 1243
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 216/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 491 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 550
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 551 LCAKSR-----------EAVSSPVEYLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 593
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+ SA V+ T GAAD RL F
Sbjct: 594 -GELSSSDEKKYKNLKRATEREITQSADVICCTCVGAAD---LRLSNFRFRQVLIDESTQ 649
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER TL G+ +L
Sbjct: 650 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL--GIKPIRL 707
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ A++ + S Y G+L + T+ F P + P+
Sbjct: 708 QVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWP--VPNRPMFFY------- 758
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ LG EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 759 -VQLGQEE-ISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNY 815
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 816 MARNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 870
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 871 ALTRARYGIVILGNPKVLSKQPLWNGLLTHYK 902
>gi|256273504|gb|EEU08438.1| Nam7p [Saccharomyces cerevisiae JAY291]
Length = 971
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|261201590|ref|XP_002628009.1| ATP-dependent helicase NAM7 [Ajellomyces dermatitidis SLH14081]
gi|239590106|gb|EEQ72687.1| ATP-dependent helicase NAM7 [Ajellomyces dermatitidis SLH14081]
gi|239611816|gb|EEQ88803.1| ATP-dependent helicase NAM7 [Ajellomyces dermatitidis ER-3]
gi|327352930|gb|EGE81787.1| ATP-dependent helicase NAM7 [Ajellomyces dermatitidis ATCC 18188]
Length = 1092
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 148/457 (32%), Positives = 219/457 (47%), Gaps = 63/457 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + G +VLV AP+N AVD
Sbjct: 443 LNSSQTNAVKSVLQK--PLSLIQGPPGTGKTVTSANIIYNLAKINGGQVLVCAPSNVAVD 500
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL VRV +R E V+S + + +D +L
Sbjct: 501 QLCERIHRTGLKTVRVTAKSR-----------EDVESPVGFLSLHEQVHNNDSNIEL--- 546
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD----- 408
+K + L A + +L Q K K+ + KE+LS+A V+ T GA DP + +
Sbjct: 547 VKLNQLKAELGELSSQDEKKFKQLVRAAEKEILSNADVICCTCVGAGDPRLAKFKFRTVL 606
Query: 409 --------------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 607 IDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 664
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ + S Y GSL + T + LL D F P + P++
Sbjct: 665 CAPIRLNVQYRMHPCLSEFPSNMFYDGSLQNGVTESERLLKDVDFPWP--VAHNPMMFWS 722
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS+I + +PY Q
Sbjct: 723 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSSIGIITPYEGQR 772
Query: 575 QHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
++ + +A G +EVA++D+FQGRE D +++S VRSN +GFL D
Sbjct: 773 SYVVSSM----QATGTFKKELYKEIEVASVDAFQGREKDYIVLSCVRSNDHQGIGFLSDP 828
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + ++ + + + LL H +
Sbjct: 829 RRLNVALTRAKYGLVILGNPKVLSKHPLWNYLLLHFK 865
>gi|323332050|gb|EGA73461.1| Nam7p [Saccharomyces cerevisiae AWRI796]
Length = 930
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|323336281|gb|EGA77552.1| Nam7p [Saccharomyces cerevisiae Vin13]
Length = 930
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|30695086|ref|NP_199512.2| Regulator of nonsense transcripts 1-like protein [Arabidopsis
thaliana]
gi|88984684|sp|Q9FJR0.2|RENT1_ARATH RecName: Full=Regulator of nonsense transcripts 1 homolog; AltName:
Full=ATP-dependent helicase UPF1
gi|332008074|gb|AED95457.1| Regulator of nonsense transcripts 1-like protein [Arabidopsis
thaliana]
Length = 1254
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 216/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 502 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 561
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 562 LCAKSR-----------EAVSSPVEYLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 604
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+ SA V+ T GAAD RL F
Sbjct: 605 -GELSSSDEKKYKNLKRATEREITQSADVICCTCVGAAD---LRLSNFRFRQVLIDESTQ 660
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER TL G+ +L
Sbjct: 661 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL--GIKPIRL 718
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ A++ + S Y G+L + T+ F P + P+
Sbjct: 719 QVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWP--VPNRPMFFY------- 769
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ LG EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 770 -VQLGQEE-ISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNY 826
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 827 MARNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 881
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 882 ALTRARYGIVILGNPKVLSKQPLWNGLLTHYK 913
>gi|325093995|gb|EGC47305.1| ATP-dependent helicase NAM7 [Ajellomyces capsulatus H88]
Length = 1071
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 151/460 (32%), Positives = 220/460 (47%), Gaps = 69/460 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + G +VLV AP+N AVD
Sbjct: 422 LNSSQTNAVKSVLQK--PLSLIQGPPGTGKTVTSANIIYNLAKINGGQVLVCAPSNVAVD 479
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL VRV +R E V+S + + +D +L
Sbjct: 480 QLCERIHRTGLKTVRVTAKSR-----------EDVESPVGFLSLHEQVHNNDSNIEL--- 525
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD-- 411
+K + L A + +L Q K K+ + KE+LS+A V+ T GA DP RL F
Sbjct: 526 VKLNQLKAELGELSSQDEKKFKQLVRAAEKEILSNADVICCTCVGAGDP---RLAKFKFR 582
Query: 412 --------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
L K+ +L GD QL PVI+++KA + G+ SL ER L
Sbjct: 583 TVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL 642
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G +L QYRM+ ++ + S Y GSL + T + LL D F P + P++
Sbjct: 643 --GCAPIRLNVQYRMHPCLSEFPSNMFYDGSLQNGVTESERLLKDVDFPWP--VAHNPMM 698
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+LG EE + +GT S+ N EA V V AGV PS+I + +PY
Sbjct: 699 FWS--------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSSIGIITPYE 748
Query: 572 AQVQHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
Q ++ + +A G +EVA++D+FQGRE D +++S VRSN +GFL
Sbjct: 749 GQRSYVVSSM----QATGTFKKELYKEIEVASVDAFQGREKDYIVLSCVRSNDHQGIGFL 804
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D RR+NVA+TRA + ++ + + + LL H +
Sbjct: 805 SDPRRLNVALTRAKYGLVILGNPKVLSKHPLWNYLLLHFK 844
>gi|225558219|gb|EEH06503.1| ATP-dependent helicase NAM7 [Ajellomyces capsulatus G186AR]
gi|240277173|gb|EER40682.1| ATP-dependent helicase NAM7 [Ajellomyces capsulatus H143]
Length = 1071
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 151/460 (32%), Positives = 220/460 (47%), Gaps = 69/460 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + G +VLV AP+N AVD
Sbjct: 422 LNSSQTNAVKSVLQK--PLSLIQGPPGTGKTVTSANIIYNLAKINGGQVLVCAPSNVAVD 479
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL VRV +R E V+S + + +D +L
Sbjct: 480 QLCERIHRTGLKTVRVTAKSR-----------EDVESPVGFLSLHEQVHNNDSNIEL--- 525
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD-- 411
+K + L A + +L Q K K+ + KE+LS+A V+ T GA DP RL F
Sbjct: 526 VKLNQLKAELGELSSQDEKKFKQLVRAAEKEILSNADVICCTCVGAGDP---RLAKFKFR 582
Query: 412 --------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
L K+ +L GD QL PVI+++KA + G+ SL ER L
Sbjct: 583 TVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL 642
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G +L QYRM+ ++ + S Y GSL + T + LL D F P + P++
Sbjct: 643 --GCAPIRLNVQYRMHPCLSEFPSNMFYDGSLQNGVTESERLLKDVDFPWP--VAHNPMM 698
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+LG EE + +GT S+ N EA V V AGV PS+I + +PY
Sbjct: 699 FWS--------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSSIGIITPYE 748
Query: 572 AQVQHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
Q ++ + +A G +EVA++D+FQGRE D +++S VRSN +GFL
Sbjct: 749 GQRSYVVSSM----QATGTFKKELYKEIEVASVDAFQGREKDYIVLSCVRSNDHQGIGFL 804
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D RR+NVA+TRA + ++ + + + LL H +
Sbjct: 805 SDPRRLNVALTRAKYGLVILGNPKVLSKHPLWNYLLLHFK 844
>gi|218199657|gb|EEC82084.1| hypothetical protein OsI_26082 [Oryza sativa Indica Group]
Length = 1277
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 150/453 (33%), Positives = 217/453 (47%), Gaps = 81/453 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 526 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 585
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 586 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 628
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+L SA V+ T GA DP RL F
Sbjct: 629 -GELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDP---RLANFRFRQVLIDESTQ 684
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 685 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVIL--GVKPFRL 742
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW-ITQCPLLLLDTRLPY 519
QYRM+ ++ + S Y G+L + TV TP + W + P+
Sbjct: 743 QVQYRMHPCLSDFPSNCFYEGTLQNGVTVNER---QTPGIDFPWPVPNRPMFFY------ 793
Query: 520 GSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH--- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 794 --VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVN 849
Query: 577 -------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+N
Sbjct: 850 YMSRNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLN 904
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + LL H +
Sbjct: 905 VALTRARYGIVILGNPKVLSKQPLWNSLLTHYK 937
>gi|115472199|ref|NP_001059698.1| Os07g0495900 [Oryza sativa Japonica Group]
gi|113611234|dbj|BAF21612.1| Os07g0495900, partial [Oryza sativa Japonica Group]
Length = 1121
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 150/453 (33%), Positives = 217/453 (47%), Gaps = 81/453 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 370 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 429
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 430 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 472
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+L SA V+ T GA DP RL F
Sbjct: 473 -GELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDP---RLANFRFRQVLIDESTQ 528
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 529 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVIL--GVKPFRL 586
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW-ITQCPLLLLDTRLPY 519
QYRM+ ++ + S Y G+L + TV TP + W + P+
Sbjct: 587 QVQYRMHPCLSDFPSNCFYEGTLQNGVTVNER---QTPGIDFPWPVPNRPMFFY------ 637
Query: 520 GSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH--- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 638 --VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVN 693
Query: 577 -------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+N
Sbjct: 694 YMSRNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLN 748
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + LL H +
Sbjct: 749 VALTRARYGIVILGNPKVLSKQPLWNSLLTHYK 781
>gi|110637960|ref|YP_678167.1| DNA helicase [Cytophaga hutchinsonii ATCC 33406]
gi|110280641|gb|ABG58827.1| DNA helicase [Cytophaga hutchinsonii ATCC 33406]
Length = 611
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 233/452 (51%), Gaps = 47/452 (10%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
D +QKKA + + + + II GPPGTGKT + EI+ +++GERVLV A +NAAVD
Sbjct: 168 LDITQKKAWEKAI-QAQDVAIIHGPPGTGKTTTIVEIVKTLIEKGERVLVCASSNAAVDV 226
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E+L+ GL +VR+GNP++I+ L ++V + V E +++ + + +
Sbjct: 227 LTERLAARGLPVVRLGNPSKITEQNLQYCLDRQVVNHEQFGLVKELKKRAEEFFRMANKY 286
Query: 354 LKD-DSLAAGIRQLLKQLGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPLI--RR 406
++ D R+ + + + L+ + + + + VL QVV T + I +
Sbjct: 287 KRNFDREEREQRKAILKEARNLRGQADDHLHFLQQNVLVKNQVVTCTPVVSMHREIGKEK 346
Query: 407 LDT--FDLVG--------------KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
DT FD G K+ ILAGD QL P + S +A + G+ +SLLE+
Sbjct: 347 FDTLIFDESGQTMEPMCWIPIQKVKKVILAGDHLQLPPTVKSDEAAKKGLAISLLEKLMP 406
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G+ + L QYRMN+ I + S+ Y L + +V H D +
Sbjct: 407 L-PGI-SEMLAIQYRMNEKIMQFPSQWFYDNKLEAHGSVKDHAFDDDV-----------I 453
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+DT G EE L A G N+ EA++V+ + + + ++I + SPY
Sbjct: 454 QFIDT------AGTGYEEELVGAPFG-IRNKQEADLVLA-ILNNVAELNKQASIGIISPY 505
Query: 571 VAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
Q+Q++RE+L + + ++V T+D FQG+E D +IIS+VRSN +GFL D RRMN
Sbjct: 506 KLQIQYIREQLIEQKITSKNIQVQTVDGFQGQEKDIIIISLVRSNGKQEIGFLKDLRRMN 565
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
VAITRA K + V+ DSST+ + F A +I
Sbjct: 566 VAITRARKKLIVIGDSSTLSSSKFYAGFQEYI 597
>gi|404449013|ref|ZP_11014005.1| type III restriction enzyme, res subunit [Indibacter alkaliphilus
LW1]
gi|403765737|gb|EJZ26615.1| type III restriction enzyme, res subunit [Indibacter alkaliphilus
LW1]
Length = 642
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 175/595 (29%), Positives = 287/595 (48%), Gaps = 124/595 (20%)
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGK-SVRIDRIQGLADTLTYERNCEALML 185
I G ++ + +D T+++ LE + F K + ID L D +Y R E +L
Sbjct: 98 INGVINQIKKDVMTVTLQLEE------LPEWFHKGKIGIDL---LFDEASY-REMEIALL 147
Query: 186 LQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIAL 245
+ R + V L G+KE A + +++L I + Q +A+A+
Sbjct: 148 AVSKADNSRLGELKRV--LLGEKE----------AAFQQLELIAI--DRLNSRQNEAVAM 193
Query: 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN 305
+K L II GPPGTGKT L I ++++ +VLV AP+NAAVD +VEKLS+ ++
Sbjct: 194 A-SKATDLAIIHGPPGTGKTTTLVAAIEKSLETNSQVLVCAPSNAAVDLLVEKLSERNIS 252
Query: 306 IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQ 365
+R+G+PAR+ + ++L +K+A+ + KDL++ L I +
Sbjct: 253 ALRMGHPARVEEQILLQTLD----AKIANHAS---------YKDLKR------LKKSIDE 293
Query: 366 LLKQLGKTLKKK--------------------------EKETVKEVLSSAQVVLATNTGA 399
L+K +GK K+ E V ++ S+QV+ T GA
Sbjct: 294 LVK-MGKKYKRSFGHEERMQRRRYFEEADRCRDEAKSLEDYIVYDIFQSSQVIACTLVGA 352
Query: 400 ADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
A ++ +F +V K+ ++AGD QL P I S +A + G+
Sbjct: 353 ASSYLKSF-SFPVVFIDEAGQGLEAATWIPIQKAKKVVMAGDHLQLPPTIKSFEASKSGL 411
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
G++L E+A L + A L QYRM++ I ++++ Y G L+++ +H +++
Sbjct: 412 GITLFEKA-ILRQPSSAVMLREQYRMHELIMGFSNRHFYQGELMAAPNTQAHYILE---- 466
Query: 501 KPTWITQCPLL-LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA-- 557
+ P+L +DT GS G E ++ + S YN EA ++++ S +
Sbjct: 467 ------EEPVLEFVDTS---GS---GYNEQVE-EESLSTYNLEEARFALNYLESFVKRIG 513
Query: 558 ----GVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGV----EVATIDS---FQGREADAV 606
+I + +PY AQV+ L E L D E + E TIDS FQGRE D +
Sbjct: 514 LRQLKEREFSIGLIAPYRAQVRRLNELLFDTYEFPNLRSYSEFLTIDSIDGFQGRERDVM 573
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+IS+VRSN G +GFL D+RRMNVA+TRA + + V+ DS+T+ ++F L ++
Sbjct: 574 LISLVRSNAKGEIGFLADTRRMNVALTRAKRKMIVIGDSATLSSHSFYTAFLDYV 628
>gi|222099668|ref|YP_002534236.1| DNA helicase [Thermotoga neapolitana DSM 4359]
gi|221572058|gb|ACM22870.1| DNA helicase [Thermotoga neapolitana DSM 4359]
Length = 650
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 199/704 (28%), Positives = 322/704 (45%), Gaps = 139/704 (19%)
Query: 15 EFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICN 74
+F +++ +L+ +ER+AE+ +E+ + + GRA
Sbjct: 5 QFVKKLIKLVELERNAEISAMLDEIKRLSGEEREK-----------KGRA---------- 43
Query: 75 LFVVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHN 133
++ + G L F V G + T + GD+V + S+G S G V
Sbjct: 44 --ILGLTGKFVGEELGYFFVRFGRRKEIDTEIGVGDLVLI----SKGTPLKSDYTGTVVE 97
Query: 134 LGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHK 193
G T++V P + KL K+VRID A +T+ R E LM L G K
Sbjct: 98 KGTRFITVAV-----DRLPPW-KL--KNVRIDL---FASDITFRRQIENLMGLSPEG--K 144
Query: 194 RNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPL 253
R + L G +E S + + ++SQ++A++L L
Sbjct: 145 R-----CLEFLLGKREPEE----------SVEEEFVPFDEGLNESQREAVSLALGSS-DF 188
Query: 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPA 313
+I GP GTGKT L E I + +G ++LVTA +N AVDN+VE+L +++VR+G+P+
Sbjct: 189 FLIHGPFGTGKTRTLVEYIRQETARGRKLLVTAESNLAVDNLVERLWG-SVSLVRIGHPS 247
Query: 314 RISPAVASKSLGEIVK---------------SKLASFVAEFERKKSDLRKDL-------- 350
R+SP + +L ++ SKL F + R+ L
Sbjct: 248 RVSPHLKESTLAHQIETHDEYTKVKEMKENLSKLIEKRDRFTKPSPQWRRGLSDEKILEY 307
Query: 351 -----------RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
++ +K+ + + ++++ + +++KE+ + ++ AQVVL+TN+ A
Sbjct: 308 AEKNWSARGVPKERIKEMAEWIKLNNQIQEMRELIEEKEEAIARSIVRKAQVVLSTNSSA 367
Query: 400 ADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
A ++ + FD+V GK+ +LAGD QL P ILS +A + +
Sbjct: 368 ALDIVSGI-LFDVVVVDEASQATIPSILIPISRGKKFVLAGDHKQLPPTILSEEARD--L 424
Query: 441 GVSLLERAATLH--EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD-- 496
+L E L+ + VL L TQYRMN+ + + S+E Y G L + +V + L+D
Sbjct: 425 SRTLFEELIRLYPEKSVL---LDTQYRMNEILMEFPSREFYDGKLKADDSVKNITLLDLG 481
Query: 497 --TPFVKPTW-ITQCP---LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHH 550
+P W + P L+ +DTR ++ + S N EA +V
Sbjct: 482 VESPNFDKLWDVILSPKNVLVFVDTRNRPDRFERQRKD------SPSRENPLEARLVKEI 535
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
V LI GV I V +PY QV +R L++ VEV ++D FQGRE + +IIS
Sbjct: 536 VEKLISMGVKEEWIGVITPYDDQVDLVRTLLEE-----KVEVHSVDGFQGREKEVIIISF 590
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI-CHNTF 653
VRSN G +GFL D RR+NV++TRA + + + DSST+ H T+
Sbjct: 591 VRSNKNGEIGFLEDLRRLNVSLTRAKRKLIAIGDSSTLSVHPTY 634
>gi|357122747|ref|XP_003563076.1| PREDICTED: regulator of nonsense transcripts 1 homolog
[Brachypodium distachyon]
Length = 1267
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 215/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 517 QKPVSLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 576
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS++ K Q LKD+
Sbjct: 577 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSEKSEMHK--LQQLKDEQ---- 619
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+L SA V+ T GA DP RL F
Sbjct: 620 -GELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDP---RLSNFRFRQVLIDESTQ 675
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 676 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVIL--GVKPFRL 733
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ ++ + S Y G+L + TV F P + P+
Sbjct: 734 QVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSTGIDFPWP--VPNRPMFFY------- 784
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 785 -VQMGVEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNY 841
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 842 MSRNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 896
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + V+ + + LL H +
Sbjct: 897 ALTRARYGIVVLGNPKVLSKQPLWNSLLTHYK 928
>gi|418738959|ref|ZP_13295352.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|421094167|ref|ZP_15554887.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200801926]
gi|410362893|gb|EKP13926.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200801926]
gi|410745657|gb|EKQ98567.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|456887825|gb|EMF98838.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200701203]
Length = 637
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 232/467 (49%), Gaps = 65/467 (13%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ + + SQK A+ L + +I GPPGTGKT L EII++ V + ++VLV+APT++
Sbjct: 185 LNSSLNPSQKNAV-LRCVLSEDIAVIHGPPGTGKTTTLTEIISQIVAEEKKVLVSAPTHS 243
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEFER 341
A D +VE +S G++++R+G+PARIS +L G+++ ++ V E +
Sbjct: 244 ACDLLVESISAKGISVLRLGHPARISDTALHTTLDYKLFHHSDGKLL-NEYRRDVIEISK 302
Query: 342 KKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
+ +++ + K+D + Q +K+L KT++ EK + ++SS V+++T +A
Sbjct: 303 QAKKYKRNFGEKEKEDR--KNLFQEVKELKKTIRSMEKGLIDSLISSHSVIVSTPVASAR 360
Query: 402 PLI--RRLD--TFD--------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVS 443
++ RR D D L R ILAGD QL P + S K + +
Sbjct: 361 SVLEGRRFDFCVLDESSQALEPATWIPILKSDRVILAGDHKQLPPTLFSEK---NSLEFT 417
Query: 444 LLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
L E+AA L L TQYRM D IAS+ S E Y L S P
Sbjct: 418 LFEKAAERLETSGRVFMLDTQYRMKDEIASFPSMEFYSNRLKSGRP------------GP 465
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHVFSL 554
I+ P P+G + +D AGT S N EA++ V L
Sbjct: 466 EKISNFP-----KTFPFGD----ALQWIDTAGTDSEEVAVDDSLTNPFEADLQVRLCTLL 516
Query: 555 ICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
I + SPY AQV+ L E+L + + ++V+TIDSFQGRE + + VRSN
Sbjct: 517 QENNWPEEEITILSPYRAQVRLLSEKLQEAG-LSKIQVSTIDSFQGRENRCIFLGFVRSN 575
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+ G GFL +SRR+NV +TRA + + DSST+ + FL+R +R +
Sbjct: 576 SEGRSGFLKESRRINVGMTRAKDLLLCIGDSSTLLEDPFLSRFIRFM 622
>gi|295657686|ref|XP_002789409.1| ATP-dependent helicase NAM7 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283831|gb|EEH39397.1| ATP-dependent helicase NAM7 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1087
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 148/457 (32%), Positives = 219/457 (47%), Gaps = 63/457 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + G +VLV AP+N AVD
Sbjct: 438 LNSSQTNAVKSVLQK--PLSLIQGPPGTGKTVTSANIIYHLAKINGGQVLVCAPSNVAVD 495
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL VRV +R E V+S + + +D +L
Sbjct: 496 QLCERIHKTGLKTVRVTAKSR-----------EDVESPVGFLSLHEQVHNNDSNIEL--- 541
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD----- 408
+K + L A + +L Q K K+ + KE+LS+A V+ T GA DP + +
Sbjct: 542 VKLNQLKAELGELSSQDEKKYKQLVRAAEKEILSNADVICCTCVGAGDPRLAKFKFRTVL 601
Query: 409 --------------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 602 IDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 659
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ + S Y GSL + T + LL D F P + P++
Sbjct: 660 CAPIRLNVQYRMHPCLSEFPSNMFYDGSLQNGVTESERLLKDVDFPWP--VAHNPMMFWS 717
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS+I + +PY Q
Sbjct: 718 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSSIGIITPYEGQR 767
Query: 575 QHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
++ + +A G +EVA++D+FQGRE D +++S VRSN +GFL D
Sbjct: 768 SYVVSSM----QATGTFKKELYKEIEVASVDAFQGREKDYIVLSCVRSNDHQGIGFLSDP 823
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + ++ + + + LL H +
Sbjct: 824 RRLNVALTRAKYGLVILGNPKVLSKHPLWNYLLLHFK 860
>gi|327200469|pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 361 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 418
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 419 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 468
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 469 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 518
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 519 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 578
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 579 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 634
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 635 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 684
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 685 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 744
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 745 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 784
>gi|50509972|dbj|BAD30435.1| putative type 1 RNA helicase [Oryza sativa Japonica Group]
gi|222637078|gb|EEE67210.1| hypothetical protein OsJ_24327 [Oryza sativa Japonica Group]
Length = 1277
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 150/453 (33%), Positives = 217/453 (47%), Gaps = 81/453 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 526 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 585
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 586 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 628
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+L SA V+ T GA DP RL F
Sbjct: 629 -GELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDP---RLANFRFRQVLIDESTQ 684
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 685 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVIL--GVKPFRL 742
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW-ITQCPLLLLDTRLPY 519
QYRM+ ++ + S Y G+L + TV TP + W + P+
Sbjct: 743 QVQYRMHPCLSDFPSNCFYEGTLQNGVTVNER---QTPGIDFPWPVPNRPMFFY------ 793
Query: 520 GSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH--- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 794 --VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVN 849
Query: 577 -------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+N
Sbjct: 850 YMSRNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLN 904
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + LL H +
Sbjct: 905 VALTRARYGIVILGNPKVLSKQPLWNSLLTHYK 937
>gi|418719080|ref|ZP_13278280.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. UI 09149]
gi|410744233|gb|EKQ92974.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. UI 09149]
Length = 637
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 232/467 (49%), Gaps = 65/467 (13%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ + + SQK A+ L + +I GPPGTGKT L EII++ V + ++VLV+APT++
Sbjct: 185 LNSSLNPSQKNAV-LRCVLSEDIAVIHGPPGTGKTTTLTEIISQIVAEEKKVLVSAPTHS 243
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEFER 341
A D +VE +S G++++R+G+PARIS +L G+++ ++ V E +
Sbjct: 244 ACDLLVESISAKGISVLRLGHPARISDTALHTTLDYKLFHHSDGKLL-NEYRRDVIEISK 302
Query: 342 KKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
+ +++ + K+D + Q +K+L KT++ EK + ++SS V+++T +A
Sbjct: 303 QAKKYKRNFGEKEKEDR--KNLFQEVKELKKTIRSMEKGLIDSLISSHSVIVSTPVASAR 360
Query: 402 PLI--RRLD--TFD--------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVS 443
++ RR D D L R ILAGD QL P + S K + +
Sbjct: 361 SVLEGRRFDFCVLDESSQALEPATWIPILKSDRVILAGDHKQLPPTLFSEK---NSLEFT 417
Query: 444 LLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
L E+AA L L TQYRM D IAS+ S E Y L S P
Sbjct: 418 LFEKAAERLETSGRVFMLDTQYRMRDEIASFPSMEFYSNRLKSGRP------------GP 465
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHVFSL 554
I+ P P+G + +D AGT S N EA++ V L
Sbjct: 466 EKISNFP-----KTFPFGD----ALQWIDTAGTDSEEVAVDDSLTNPFEADLQVRLCTLL 516
Query: 555 ICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
I + SPY AQV+ L E+L + + ++V+TIDSFQGRE + + VRSN
Sbjct: 517 QENNWPEEEITILSPYRAQVRLLSEKLQEAG-LSKIQVSTIDSFQGRENRCIFLGFVRSN 575
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+ G GFL +SRR+NV +TRA + + DSST+ + FL+R +R +
Sbjct: 576 SEGRSGFLKESRRINVGMTRAKDLLLCIGDSSTLLEDPFLSRFIRFM 622
>gi|154285820|ref|XP_001543705.1| ATP-dependent helicase NAM7 [Ajellomyces capsulatus NAm1]
gi|150407346|gb|EDN02887.1| ATP-dependent helicase NAM7 [Ajellomyces capsulatus NAm1]
Length = 1088
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 151/460 (32%), Positives = 220/460 (47%), Gaps = 69/460 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + G +VLV AP+N AVD
Sbjct: 439 LNSSQTNAVKSVLQK--PLSLIQGPPGTGKTVTSANIIYNLAKINGGQVLVCAPSNVAVD 496
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL VRV +R E V+S + + +D +L
Sbjct: 497 QLCERIHRTGLKTVRVTAKSR-----------EDVESPVGFLSLHEQVHNNDSNIEL--- 542
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD-- 411
+K + L A + +L Q K K+ + KE+LS+A V+ T GA DP RL F
Sbjct: 543 VKLNQLKAELGELSSQDEKKFKQLVRAAEKEILSNADVICCTCVGAGDP---RLAKFKFR 599
Query: 412 --------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
L K+ +L GD QL PVI+++KA + G+ SL ER L
Sbjct: 600 TVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL 659
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G +L QYRM+ ++ + S Y GSL + T + LL D F P + P++
Sbjct: 660 --GCAPIRLNVQYRMHPCLSEFPSNMFYDGSLQNGVTESERLLKDVDFPWP--VAHNPMM 715
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+LG EE + +GT S+ N EA V V AGV PS+I + +PY
Sbjct: 716 FWS--------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSSIGIITPYE 765
Query: 572 AQVQHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
Q ++ + +A G +EVA++D+FQGRE D +++S VRSN +GFL
Sbjct: 766 GQRSYVVSSM----QATGTFKKELYKEIEVASVDAFQGREKDYIVLSCVRSNDHQGIGFL 821
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D RR+NVA+TRA + ++ + + + LL H +
Sbjct: 822 SDPRRLNVALTRAKYGLVILGNPKVLSKHPLWNYLLLHFK 861
>gi|449511522|ref|XP_004163978.1| PREDICTED: regulator of nonsense transcripts 1 homolog [Cucumis
sativus]
Length = 1268
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 214/450 (47%), Gaps = 75/450 (16%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 496 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 555
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDL--RKDLR--QCLKDDSLAAGIR 364
+ +R E V S + ++ + D R +L Q LKD+
Sbjct: 556 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQ-----G 599
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD------------- 411
+L K K ++ T +E+ SA V+ T GA DP RL F
Sbjct: 600 ELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP---RLSNFRFRQVLIDESTQAT 656
Query: 412 ---------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 657 EPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GVKPIRLQV 714
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ +++ + S Y G+L + T+ F P + P+ +
Sbjct: 715 QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWP--VPNRPMFFY--------V 764
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH------ 576
+G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 765 QMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMS 822
Query: 577 ----LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA+
Sbjct: 823 RNGALRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVAL 877
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ + + LL H +
Sbjct: 878 TRARYGIVILGNPKVLSKQPLWNSLLTHYK 907
>gi|18976944|ref|NP_578301.1| dna2-nam7 helicase family protein [Pyrococcus furiosus DSM 3638]
gi|18892566|gb|AAL80696.1| dna2-nam7 helicase family protein [Pyrococcus furiosus DSM 3638]
Length = 655
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 194/651 (29%), Positives = 309/651 (47%), Gaps = 111/651 (17%)
Query: 77 VVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
++S + + G L F V+ G ++ T +S GD+V + S+ S + G V G
Sbjct: 44 ILSLNGKIVGEELGYFLVKYGRNKEIKTEISVGDLVVI----SKRDPLKSDLLGTVVEKG 99
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
+ I VALE P ++ +R RI A+ +T++R E L ++K G
Sbjct: 100 K--RFIVVALEPV---PEWA------LRDVRIDLYANDITFKRWIENLDRVRKAG----- 143
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
K +L ++ + EV + K+ + SQ+KAIA L + +
Sbjct: 144 -----------KKALEFYLGLDEPSQGEEVSFEP-FDKSLNPSQRKAIAKALGSE-DFFL 190
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARI 315
I GP GTGKT L E+I + V++G +VL TA +N AVDN+VE+L+ G+ IVRVG+P+R+
Sbjct: 191 IHGPFGTGKTRTLVELIRQEVKRGNKVLATAESNVAVDNLVERLAKDGVKIVRVGHPSRV 250
Query: 316 SPAVASKSL----------GE-----IVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS 358
S + +L GE ++ LA + + R+ L + +K
Sbjct: 251 SRHLHETTLAYLITQHELYGELRELRVIGQSLAEKRDTYTKPTPKFRRGLSDAEIIKLAE 310
Query: 359 LAAGIR----QLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGAAD 401
G R +L+K++ + +K K E+ ++++ A VVL TN+ AA
Sbjct: 311 KGRGARGLSARLIKEMAEWIKLNRQVQKAFEDARKLEERIARDIIREADVVLTTNSSAAL 370
Query: 402 PLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGV 442
++ D +D+ R ILAGD QL P ILS +A E
Sbjct: 371 DVVDATD-YDVAIIDEATQATIPSILIPLNKVDRFILAGDHKQLPPTILSLEAQE----- 424
Query: 443 SLLERAATLHEGVL------ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ TL EG++ + LT QYRMN+ I + S+E Y G +++ +V + L D
Sbjct: 425 ----LSHTLFEGLIEKYPWKSEMLTIQYRMNERIMEFPSREFYDGRIVADESVKNITLAD 480
Query: 497 TPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI 555
V + I + L + + + L G+ S N EA+IV V L+
Sbjct: 481 LGIKVNASGIWRDILDPNNVLVFIDTCMLENRFERQRRGSESRENPLEAKIVSKIVEKLL 540
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
+GV + V +PY Q R+ + ++PE VEV T+D +QGRE + +I+S VRSN
Sbjct: 541 ESGVKAEMMGVITPYDDQ----RDLISLNVPEE--VEVKTVDGYQGREKEVIILSFVRSN 594
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
G +GFL D RR+NV++TRA + + ++ DSST+ + RL+ H+R G
Sbjct: 595 KAGEIGFLKDLRRLNVSLTRAKRKLIMIGDSSTLSSHETYRRLIEHVREKG 645
>gi|449464902|ref|XP_004150168.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
homolog [Cucumis sativus]
Length = 1246
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 214/450 (47%), Gaps = 75/450 (16%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 496 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 555
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDL--RKDLR--QCLKDDSLAAGIR 364
+ +R E V S + ++ + D R +L Q LKD+
Sbjct: 556 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQ-----G 599
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD------------- 411
+L K K ++ T +E+ SA V+ T GA DP RL F
Sbjct: 600 ELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP---RLSNFRFRQVLIDESTQAT 656
Query: 412 ---------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 657 EPECLIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GVKPIRLQV 714
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ +++ + S Y G+L + T+ F P + P+ +
Sbjct: 715 QYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWP--VPNRPMFFY--------V 764
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH------ 576
+G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 765 QMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMS 822
Query: 577 ----LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA+
Sbjct: 823 RNGALRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVAL 877
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ + + LL H +
Sbjct: 878 TRARYGIVILGNPKVLSKQPLWNSLLTHYK 907
>gi|365763806|gb|EHN05332.1| Nam7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 971
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL E+ +
Sbjct: 567 RTVLIDESTQASGPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFEKLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|422003681|ref|ZP_16350909.1| DNA and RNA helicase subunit [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417257651|gb|EKT87048.1| DNA and RNA helicase subunit [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 634
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 154/472 (32%), Positives = 239/472 (50%), Gaps = 75/472 (15%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + +DSQK A+ L + I+ GPPGTGKT L EI+ + V++G +VLV+APT
Sbjct: 183 GRINPSLNDSQKNAV-LHCVLSEDVSIVHGPPGTGKTTTLTEIVNQLVEEGRKVLVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
++A D +VE +S G++++R+G+PARI AV + +L G+++ ++ V E
Sbjct: 242 HSACDLLVESISAKGISVLRLGHPARIGEAVLNSTLDYKLFHHSDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
R+ +++ + K+ + Q +K+L KT++ EK + ++SS V+++T +
Sbjct: 301 SRQAKKYKRNFGE--KEREERRNLFQEVKELKKTIRSMEKGLIDSLISSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILS-RKALEGG 439
+ ++ TFD L R ILAGD QL P + S R +LE
Sbjct: 359 SRSVLEG-KTFDFCVLDESSQALEPASWIPILKSDRVILAGDHKQLPPTLFSDRNSLE-- 415
Query: 440 IGVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+L E+AA L L TQYRM D I+S++S E Y L S +
Sbjct: 416 --TTLFEKAAERLEFSNRVFLLDTQYRMKDEISSFSSMEFYSNRLKSGRPM--------- 464
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHH 550
P + P P+G+ + +D AGT S N EA++ V
Sbjct: 465 ---PERTSNFP-----ETFPFGN----AFQWIDTAGTDSEEVSMDDSIINPFEADLEVRL 512
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG---VEVATIDSFQGREADAVI 607
L I + SPY AQV+ L E+L + AG V+V+TIDSFQGRE ++
Sbjct: 513 CILLQENNWPEEEITILSPYRAQVRLLSEKLRE----AGLFKVQVSTIDSFQGRENRCIL 568
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L++
Sbjct: 569 LGFVRSNPEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLLEDPFLSKLIQ 620
>gi|367000487|ref|XP_003684979.1| hypothetical protein TPHA_0C03950 [Tetrapisispora phaffii CBS 4417]
gi|357523276|emb|CCE62545.1| hypothetical protein TPHA_0C03950 [Tetrapisispora phaffii CBS 4417]
Length = 990
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 225/457 (49%), Gaps = 65/457 (14%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMV 296
SQ A+A L K PL +IQGPPGTGKT I+ + +R+LV AP+N AVD++
Sbjct: 426 SQASAVANVLQK--PLSLIQGPPGTGKTVTSATIVYHLSKSHKDRILVCAPSNVAVDHLA 483
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
KL D+GL +VR+ +R + +V++ +L +V K +LRK L+
Sbjct: 484 TKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVA----------RAAKGELRKLLKLKE 533
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-FDLV 413
+ L+A K+ K L+K E E +K+ A VV T GA D +RLDT F V
Sbjct: 534 EVGELSASD---TKKFVKLLRKTESEIMKK----ADVVCCTCVGAGD---KRLDTKFRTV 583
Query: 414 --------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
K+ IL GD QL PVIL RKA + G+ SL ER +L
Sbjct: 584 LIDESTQASEPECLIPIIKGAKQVILVGDHQQLGPVILERKAGDAGLKQSLFERLISL-- 641
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
G + +L QYRMN ++ + S Y GSL + T+ + + F P I + P++
Sbjct: 642 GHIPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVSASSFPWP--IHEIPMMFW 699
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
+ G EE + GT S+ N EA + L GV P I V +PY Q
Sbjct: 700 --------ANFGREE-ISANGT-SYLNRIEAMNCERIITKLFKDGVKPEQIGVITPYEGQ 749
Query: 574 VQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D RR+
Sbjct: 750 RAYILQYMQMNGSLDKELYINVEVASVDAFQGREKDYIILSCVRANEQQAIGFLSDPRRL 809
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NV +TRA + ++ + ++ N+ LL H R G
Sbjct: 810 NVGLTRAKYGLVILGNPRSLSRNSLWNHLLIHFREKG 846
>gi|297794533|ref|XP_002865151.1| low-level beta-amylase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297310986|gb|EFH41410.1| low-level beta-amylase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1253
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 216/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 502 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 561
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 562 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 604
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K +++T +E+ SA V+ T GAAD RL F
Sbjct: 605 -GELSSSDEKKYKNLKRQTEREITQSADVICCTCVGAAD---LRLSNFRFRQVLIDESTQ 660
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L G+ +L
Sbjct: 661 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GIKPIRL 718
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ A++ + S Y G+L + T+ F P + P+
Sbjct: 719 QVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWP--VPNRPMFFY------- 769
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ LG EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 770 -VQLGQEE-ISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNY 826
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 827 MARNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 881
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 882 ALTRARYGIVILGNPKVLSKQPLWNGLLTHYK 913
>gi|226286939|gb|EEH42452.1| ATP-dependent helicase NAM7 [Paracoccidioides brasiliensis Pb18]
Length = 1087
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 147/457 (32%), Positives = 219/457 (47%), Gaps = 63/457 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + G +VLV AP+N AVD
Sbjct: 438 LNSSQTNAVKSVLQK--PLSLIQGPPGTGKTVTSANIIYHLAKINGGQVLVCAPSNVAVD 495
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL VRV +R E V+S + + +D +L
Sbjct: 496 QLCERIHKTGLKTVRVTAKSR-----------EDVESPVGFLSLHEQVHNNDSNIEL--- 541
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD----- 408
+K + L A + +L Q K K+ + +E+LS+A V+ T GA DP + +
Sbjct: 542 VKLNQLKAELGELSSQDEKKYKQLVRAAEREILSNADVICCTCVGAGDPRLAKFKFRTVL 601
Query: 409 --------------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 602 IDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 659
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ + S Y GSL + T + LL D F P + P++
Sbjct: 660 CAPIRLNVQYRMHPCLSEFPSNMFYDGSLQNGVTESERLLKDVDFPWP--VAHNPMMFWS 717
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS+I + +PY Q
Sbjct: 718 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSSIGIITPYEGQR 767
Query: 575 QHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
++ + +A G +EVA++D+FQGRE D +++S VRSN +GFL D
Sbjct: 768 SYVVSSM----QATGTFKKELYKEIEVASVDAFQGREKDYIVLSCVRSNDHQGIGFLSDP 823
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + ++ + + + LL H +
Sbjct: 824 RRLNVALTRAKYGLVILGNPKVLSKHPLWNYLLLHFK 860
>gi|116331470|ref|YP_801188.1| DNA and RNA helicase subunit [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116125159|gb|ABJ76430.1| DNA and RNA helicase subunit [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 637
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 151/467 (32%), Positives = 231/467 (49%), Gaps = 65/467 (13%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ + + SQK A+ L + +I GPPGTGKT L EII++ V + ++VLV+APT++
Sbjct: 185 LNSSLNPSQKNAV-LRCVLSEDIAVIHGPPGTGKTTTLTEIISQIVAEEKKVLVSAPTHS 243
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEFER 341
A D +VE +S G++++R+G PARIS +L G+++ ++ V E +
Sbjct: 244 ACDLLVESISAKGISVLRLGYPARISDTALHTTLDYKLFHHSDGKLL-NEYRRDVIEISK 302
Query: 342 KKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
+ +++ + K+D + Q +K+L KT++ EK + ++SS V+++T +A
Sbjct: 303 QAKKYKRNFGEKEKEDR--KNLFQEVKELKKTIRSMEKGLIDSLISSHSVIVSTPVASAR 360
Query: 402 PLI--RRLD--TFD--------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVS 443
++ RR D D L R ILAGD QL P + S K + +
Sbjct: 361 SVLEGRRFDFCVLDESSQALEPATWIPILKSDRVILAGDHKQLPPTLFSEK---NSLEFT 417
Query: 444 LLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
L E+AA L L TQYRM D IAS+ S E Y L S P
Sbjct: 418 LFEKAAERLETSGRVFMLDTQYRMKDEIASFPSMEFYSNRLKSGRP------------GP 465
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHVFSL 554
I+ P P+G + +D AGT S N EA++ V L
Sbjct: 466 EKISNFP-----KTFPFGD----ALQWIDTAGTDSEEVAVDDSLTNPFEADLQVRLCTLL 516
Query: 555 ICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
I + SPY AQV+ L E+L + + ++V+TIDSFQGRE + + VRSN
Sbjct: 517 QENNWPEEEITILSPYRAQVRLLSEKLQE-AGLSKIQVSTIDSFQGRENRCIFLGFVRSN 575
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+ G GFL +SRR+NV +TRA + + DSST+ + FL+R +R +
Sbjct: 576 SEGRSGFLKESRRINVGMTRAKDLLLCIGDSSTLLEDPFLSRFIRFM 622
>gi|456876620|gb|EMF91699.1| AAA domain protein [Leptospira santarosai str. ST188]
Length = 634
Score = 192 bits (487), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 239/472 (50%), Gaps = 75/472 (15%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + +DSQK A+ L + I+ GPPGTGKT L EI+ + V++G ++LV+APT
Sbjct: 183 GRINPSLNDSQKNAV-LHCVLSEDVSIVHGPPGTGKTTTLTEIVNQLVEEGRKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
++A D +VE +S G++++R+G+PARI AV + +L G+++ ++ V E
Sbjct: 242 HSACDLLVESISAKGISVLRLGHPARIGEAVLNSTLDYKLFHHSDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
R+ +++ + K+ + Q +K+L KT++ EK + ++SS V+++T +
Sbjct: 301 SRQAKKYKRNFGE--KEREERRNLFQEVKELKKTIRSMEKGLIDSLISSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILS-RKALEGG 439
+ ++ TFD L R ILAGD QL P + S R +LE
Sbjct: 359 SRSVLEG-KTFDFCVLDESSQALEPASWIPILKSDRVILAGDHKQLPPTLFSDRNSLE-- 415
Query: 440 IGVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+L E+AA L L TQYRM D I+S++S E Y L S ++
Sbjct: 416 --TTLFEKAAERLEFSNRVFLLDTQYRMKDEISSFSSMEFYSNRLKSGRPMSER------ 467
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHH 550
+ P P+G+ + +D AGT S N EA++ V
Sbjct: 468 ------TSNFP-----ETFPFGN----AFQWIDTAGTDSEEVSMDDSIINPFEADLEVRF 512
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG---VEVATIDSFQGREADAVI 607
L I + SPY AQV+ L E+L + AG V+V+TIDSFQGRE V+
Sbjct: 513 CILLQENNWPEEEITILSPYRAQVRLLSEKLRE----AGLFKVQVSTIDSFQGRENRCVL 568
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L++
Sbjct: 569 LGFVRSNPEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLLEDPFLSKLIQ 620
>gi|225683333|gb|EEH21617.1| DNA-binding protein SMUBP-2 [Paracoccidioides brasiliensis Pb03]
Length = 1074
Score = 192 bits (487), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 147/457 (32%), Positives = 219/457 (47%), Gaps = 63/457 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + G +VLV AP+N AVD
Sbjct: 444 LNSSQTNAVKSVLQK--PLSLIQGPPGTGKTVTSANIIYHLAKINGGQVLVCAPSNVAVD 501
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL VRV +R E V+S + + +D +L
Sbjct: 502 QLCERIHKTGLKTVRVTAKSR-----------EDVESPVGFLSLHEQVHNNDSNIEL--- 547
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD----- 408
+K + L A + +L Q K K+ + +E+LS+A V+ T GA DP + +
Sbjct: 548 VKLNQLKAELGELSSQDEKKYKQLVRAAEREILSNADVICCTCVGAGDPRLAKFKFRTVL 607
Query: 409 --------------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 608 IDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 665
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ + S Y GSL + T + LL D F P + P++
Sbjct: 666 CAPIRLNVQYRMHPCLSEFPSNMFYDGSLQNGVTESERLLKDVDFPWP--VAHNPMMFWS 723
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS+I + +PY Q
Sbjct: 724 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSSIGIITPYEGQR 773
Query: 575 QHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
++ + +A G +EVA++D+FQGRE D +++S VRSN +GFL D
Sbjct: 774 SYVVSSM----QATGTFKKELYKEIEVASVDAFQGREKDYIVLSCVRSNDHQGIGFLSDP 829
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + ++ + + + LL H +
Sbjct: 830 RRLNVALTRAKYGLVILGNPKVLSKHPLWNYLLLHFK 866
>gi|392590481|gb|EIW79810.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 775
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 226/812 (27%), Positives = 337/812 (41%), Gaps = 194/812 (23%)
Query: 8 TIQSRLDEFTQRMSELLRIERDAELEFTQEEL-NAVPTPDENSDSSKPIEFLVSHGRAPQ 66
T ++L F R LL++ERDAE+E + L N P + L G A
Sbjct: 8 TTDAQLHAFIDRQRALLQLERDAEIERSSLLLTNCSP------------KLLEQRGLA-- 53
Query: 67 ELCDTICNLFVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLSPGDMVCVRVCDSRGAC 122
+ L S GLGG LV L R H PP + PGD+ + +
Sbjct: 54 -----LGALGTASVGVGLGGKTLVELERPSAWHTDAVFPPHSFRPGDIARIEENAAGSGG 108
Query: 123 --------------------ATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSV 162
+ I+G V+ + + I++ DP+ + +
Sbjct: 109 KKAPKGKKTGAGGGTGGGEKSMKAIEGVVYKVTDTRIVIAL-------DPSETSSEDAEI 161
Query: 163 -RIDRIQGLADTLTYERNCEALMLLQKNGL--------HKRNPSIAAVVTLFGDKEDVTW 213
R+ LA+++TY+R + + L+K GL P A L G
Sbjct: 162 PECARVVKLANSVTYDRMDKTIDQLEKTGLPSTRKADDKSSYPLTALTRVLLGISPRS-- 219
Query: 214 LEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA 273
E + A E++ + + SQK+A+ L+ + I GPPGTGKT L EII
Sbjct: 220 -EPSSPARVEEIQF---YDPSLNASQKEAVRFALSAGE-VACIHGPPGTGKTHTLIEIIR 274
Query: 274 RAV-----------------------QQGERVLVTAPTNAAVDNMVEKL----------- 299
+ ++ +R+LV +N AVDN++E+L
Sbjct: 275 QLASPPSSSTSLTSTGTPSNPNQDQEKKPKRILVCGASNLAVDNILERLLALPAPTSSAA 334
Query: 300 SDVGLNIVRVGNPARISP------AVASKSLGEIVKSKLASFV-AEFERKKSDLRKDLRQ 352
+ L R+G+PAR+ A G ++ LA V AE E L +
Sbjct: 335 APAKLTATRIGHPARVMAHEGVLEATLEVRAGRSDQAALAKDVKAELEATLDVLSGKGKG 394
Query: 353 CLKDDSLAAGIRQL---LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
K A R++ +K L K +++E V+ VL +Q+VLAT A +R +
Sbjct: 395 GAKARPRGAERRKMWDEVKALRKEYRQREGGVVRAVLGESQIVLATCHSAGGRQLRN-HS 453
Query: 410 FDLV-------------------GKRCILAGDQCQLAPVILS-------RKALEGGIG-- 441
FD+V ++ ILAGD QL P ILS +KA +G +
Sbjct: 454 FDVVIIDEATQAMEAVCWVPIFKAQKLILAGDPMQLPPTILSTDKSKVSKKAKDGKVADR 513
Query: 442 ---------------VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISS 486
+L +R ++ + L QYRM+ I ++ S +Y L S+
Sbjct: 514 KAKRRPGLRPPRSLETTLFDRLERMYGPGIKRLLNVQYRMHAQICAFPSATLYASRLKSA 573
Query: 487 STVASHLLVDTPFVKPTW-----------ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT 535
+V++HLL D P + W + P++ DT GCE + L G+
Sbjct: 574 ESVSAHLLSDLPGTR-AWQAASDAESIKEVLGTPIVFFDT--------AGCEFYERLEGS 624
Query: 536 G-------------SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD 582
G S NE EA +V V L+ AGV PS IAV +PY AQV L L
Sbjct: 625 GDNDTKGGGGAEEGSKCNENEAGVVKRWVERLVEAGVLPSQIAVITPYQAQVTLLTSLLR 684
Query: 583 DL--PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+ PE +E+ T+D QGRE +AV+IS+VRSN VGFL + RR+NVA+TRA +H+
Sbjct: 685 ETYGPE---LEIGTVDGMQGREKEAVVISLVRSNEKREVGFLKEKRRLNVAMTRAKRHLC 741
Query: 641 VVCDSSTICH-NTFLARLLRHIRYFGRVKHAE 671
VV DS T+ H +L + L + V+ AE
Sbjct: 742 VVGDSDTVQHGGPYLKKWLTWLEANADVRFAE 773
>gi|294657547|ref|XP_002770466.1| DEHA2E12430p [Debaryomyces hansenii CBS767]
gi|199432775|emb|CAR65809.1| DEHA2E12430p [Debaryomyces hansenii CBS767]
Length = 985
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 147/446 (32%), Positives = 222/446 (49%), Gaps = 62/446 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + E++LV AP+N AVD++ +KL+ +GL ++R
Sbjct: 446 QRPLSLIQGPPGTGKTVTSATIVYHLSKLSKEKILVCAPSNVAVDHLADKLNLLGLKVIR 505
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R + +V +L IV + + R LR +L + + DS RQL
Sbjct: 506 LTAKSREDVESSVNDLALHNIVNKSAKGELKKLIR----LRNELGELSESDS-----RQL 556
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
+K L ++ + K +L+ VV T GA D + L ++
Sbjct: 557 IK-LTRSSEMK-------ILNKCDVVCCTCVGAGDKRLSNLKFRTVLIDESTQASEPEVL 608
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD QL PVIL +KA + G+ SL ER L G + +L QYRMN
Sbjct: 609 IPIVKGAKQVILVGDHQQLGPVILDKKAGDAGLKQSLFERLVVL--GHVPIRLEVQYRMN 666
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
++ + S Y GSL + T L+ ++ F P +LD + + + + G E
Sbjct: 667 PCLSEFPSNMFYEGSLQNGVTAKQRLIENSIF---------PWPVLDNPMMFWA-NYGRE 716
Query: 528 EHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY------VAQVQHLRER 580
E ++G+G SF N EA V + L G+ PS I V +PY + Q +
Sbjct: 717 E---ISGSGNSFLNRVEAMNVEKIITKLFKDGIEPSQIGVITPYEGQRAYIVQYMSMNST 773
Query: 581 LDDLPEAA-GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
L +L E VE+ ++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA +
Sbjct: 774 LTELKEKYLEVEITSVDAFQGREKDFIILSCVRANDSQVIGFLSDPRRLNVALTRAKYGL 833
Query: 640 AVVCDSSTICHNTFLARLLRHIRYFG 665
++ + +C NT LL H R G
Sbjct: 834 VILGNPRALCRNTLWNHLLIHFREKG 859
>gi|242045720|ref|XP_002460731.1| hypothetical protein SORBIDRAFT_02g033940 [Sorghum bicolor]
gi|241924108|gb|EER97252.1| hypothetical protein SORBIDRAFT_02g033940 [Sorghum bicolor]
Length = 1269
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 215/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 520 QKPVSLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 579
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 580 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 622
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+L SA V+ T GA DP RL F
Sbjct: 623 -GELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDP---RLSNFRFRQVLIDESTQ 678
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 679 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVIL--GVKPFRL 736
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ ++ + S Y G+L + TV F P + P+
Sbjct: 737 QVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWP--VPNRPMFFY------- 787
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 788 -VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNY 844
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 845 MSRNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 899
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 900 ALTRARYGIVILGNPKVLSKQPLWNSLLTHYK 931
>gi|323307726|gb|EGA60989.1| Nam7p [Saccharomyces cerevisiae FostersO]
Length = 971
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 154/460 (33%), Positives = 225/460 (48%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV P+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCXPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>gi|358341434|dbj|GAA49117.1| regulator of nonsense transcripts 1 [Clonorchis sinensis]
Length = 1183
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 192/622 (30%), Positives = 278/622 (44%), Gaps = 93/622 (14%)
Query: 77 VVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG- 135
VV T L H+ FR+ G + P + GD + +R R S G H +
Sbjct: 166 VVRWETALNRKHVAYFRIPGANEGPELRIMHGDELIIR----RFNTPDSNWSGVGHVIKI 221
Query: 136 EDGCTISVALESRHGDPTFS-------KLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
D + V LE + D S + KS DR+ +T E C+ L
Sbjct: 222 PDNFSDEVGLEMKQADVVPSDPVTYMVEFKWKSTPFDRMIQAISKVT-EEQCDLL----- 275
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
P I L G + D L+ N +S L + SQ A+ L
Sbjct: 276 ------PPYI--FYRLLGHEMDDMVLKCNLPKRYSAPDL-----PELNHSQVFAVKTVL- 321
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIAR--AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
+RPL +IQGPPGTGKT I+ + Q ++VLV AP+N AVD + EK+S GL +
Sbjct: 322 -QRPLSLIQGPPGTGKTVTSASIVYHLNKIHQ-KKVLVVAPSNTAVDQLCEKISRTGLKV 379
Query: 307 VRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
VR+ AR A+AS V + A+ + S+LRK Q LKD++ +L
Sbjct: 380 VRLC--ARSREALASP-----VSHLMLHVQAQHVKGHSELRK--LQQLKDET-----GEL 425
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD--------------- 411
+ K + ++E +E+L +A VV T A D + RL
Sbjct: 426 SQADEKRYRLLKRELERELLVAADVVCCTCVTAGDQRLERLSFHSVLIDESTQATEPECL 485
Query: 412 ---LVG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
+VG ++ +L GD CQL PVI +KA G+ SL ER L G+ +L QYRM+
Sbjct: 486 IPLMVGCRQVVLVGDHCQLGPVITCKKAANAGLTQSLFERFVLL--GIRPMRLQVQYRMH 543
Query: 468 DAIASWASKEMYGGSLISSSTVASHL-LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
A++++ S Y GSL + T +D P+ P P+ T G
Sbjct: 544 PALSAFPSNVFYEGSLQNGVTAEDRCKQIDFPWPNPDR----PMFFYCTS--------GQ 591
Query: 527 EEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
EE ++G G S+ N EA V V ++ GV P+ I V +PY Q +L L
Sbjct: 592 EE---ISGNGVSYLNRTEAATVEKIVTKMLKIGVHPNTIGVITPYEGQRAYLAHYLHYSG 648
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+ +E+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA +
Sbjct: 649 SLNSKLYQEIEIASVDAFQGREKDYIILSCVRANENQGIGFLNDPRRLNVALTRARYGLI 708
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
VV + +C +LL R
Sbjct: 709 VVGNPKALCKQPLWNQLLHFYR 730
>gi|410940949|ref|ZP_11372748.1| AAA domain protein [Leptospira noguchii str. 2006001870]
gi|410783508|gb|EKR72500.1| AAA domain protein [Leptospira noguchii str. 2006001870]
Length = 634
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 152/470 (32%), Positives = 236/470 (50%), Gaps = 75/470 (15%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
M + ++SQK A+ L + + +I GPPGTGKT L EI+ + V + ++VLV+APTN+
Sbjct: 185 MNTSLNESQKNAV-LHCVLSQDVAVIHGPPGTGKTTTLTEIVRQLVAEEKKVLVSAPTNS 243
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEFER 341
A D +VE +S G+ ++R+G+PAR+S A +L G+++ ++ V E +
Sbjct: 244 ACDLLVESISAKGIPVLRLGHPARVSEAAIHSTLDYKLFHHPDGKLL-NEYKKDVIEISK 302
Query: 342 KKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
+ +++ + K+ + +K+L KT++ E + ++SS V+++T +A
Sbjct: 303 QAKKFKRNFGE--KEREERKNLFMEVKELKKTIRSMEIGLIDSLVSSHSVIVSTPVASAR 360
Query: 402 PLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKA-LEGGIG 441
++ TFD L R ILAGD QL P + S K+ LE +
Sbjct: 361 GVLEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEKSFLEFTLF 419
Query: 442 VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
++ER + L L TQYRM D I S++SKE Y G L+ S D P
Sbjct: 420 EKVIERLKSYERVFL---LDTQYRMKDEIVSFSSKEFYSG-LLKSGRPEKERFFDFP--- 472
Query: 502 PTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHVFS 553
P+ L + +D AGT S N EA++ V + S
Sbjct: 473 -------------KTFPF----LNVFQWIDTAGTDSEEVIVDDSISNPFEADLQV-RICS 514
Query: 554 LICAGVSP-SAIAVQSPYVAQVQHLRERLDDLPEAAG---VEVATIDSFQGREADAVIIS 609
L+ P I + SPY AQV+ + E+L D AG + V+TIDSFQGRE +++
Sbjct: 515 LLKENNWPEEEITILSPYRAQVRLIAEKLRD----AGLTKISVSTIDSFQGRENRCILLG 570
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
VRSN+ G GFL +SRR+NV +TRA + + DSST+ + FL +L+R
Sbjct: 571 FVRSNSEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLWKLIR 620
>gi|406607433|emb|CCH41224.1| ATP-dependent helicase NAM7 [Wickerhamomyces ciferrii]
Length = 1038
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 148/447 (33%), Positives = 218/447 (48%), Gaps = 66/447 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II +R+LV AP+N AVD++ KL +GL ++R
Sbjct: 462 QKPLSLIQGPPGTGKTVTSATIIHHLTNLNKDRILVCAPSNVAVDHLASKLDQLGLKVIR 521
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R + +V SL I++ + + R LR +L + +D+
Sbjct: 522 LTAKSREDVESSVQHLSLSNIIQKSAKGQLKKLLR----LRNELGELSAEDT-------- 569
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
K L+KKEK +K+ A VV AT GA D RRL+ +
Sbjct: 570 -KTYFTLLRKKEKSILKQ----ADVVCATCVGAGD---RRLENVNFRTILIDESTQASEP 621
Query: 414 ---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
K+ IL GD QL PVIL +KA + G+ SL ER L G + +L QY
Sbjct: 622 ECLIPLVHGAKQVILVGDHQQLGPVILDKKAGDAGLKQSLFERLVVL--GHVPIRLEVQY 679
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RMN ++ ++S Y GSL + T L ++ F P ++DT + + + +
Sbjct: 680 RMNPCLSEFSSNMFYDGSLQNGVTKEQRQLPNSAF---------PWPVVDTPMMFWA-NF 729
Query: 525 GCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD- 582
G EE ++G+G SF N EA + L GV P I V +PY Q ++ + +
Sbjct: 730 GREE---ISGSGTSFLNRIEAMNCERIITRLFRDGVQPEQIGVITPYEGQRAYVVQYMQM 786
Query: 583 ----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
D VEVA++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 787 NGSMDKDLYMDVEVASVDAFQGREKDFIILSCVRANDQQNIGFLSDPRRLNVALTRAKYG 846
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFG 665
V ++ + + N +LL H R G
Sbjct: 847 VVILGNPRALSKNQLWNQLLLHYREKG 873
>gi|357482277|ref|XP_003611424.1| Regulator of nonsense transcripts-like protein [Medicago
truncatula]
gi|355512759|gb|AES94382.1| Regulator of nonsense transcripts-like protein [Medicago
truncatula]
Length = 1253
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 214/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RP+ +IQGPPGTGKT ++ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 490 QRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 549
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERK------KSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ + KS+L K Q LKD+
Sbjct: 550 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSDKSELHK--LQQLKDEQ---- 592
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+ SA V+ T GA DP RL F
Sbjct: 593 -GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP---RLANFRFRQVLIDESTQ 648
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 649 ATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GVKPIRL 706
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ ++ + S Y G+L + TV F P + P+
Sbjct: 707 QVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSTGIDFPWP--VPNRPMFFY------- 757
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 758 -VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNY 814
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 815 MSRNGALRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 869
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 870 ALTRARYGIVILGNPKVLSKQPLWNGLLTHYK 901
>gi|358395794|gb|EHK45181.1| hypothetical protein TRIATDRAFT_243374 [Trichoderma atroviride IMI
206040]
Length = 1083
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 225/452 (49%), Gaps = 53/452 (11%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDN 294
D +Q + A+ +RPL +IQGPPGTGKT II A G +VLV AP+N AVD
Sbjct: 447 DLNQGQVDAIKAVLQRPLSLIQGPPGTGKTVTSATIIYHLAKTSGSQVLVCAPSNVAVDQ 506
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+ E++ GL +VR+ +R E V+S + +F+A E+ + + + + +
Sbjct: 507 LCERIHRTGLKVVRLTAKSR-----------EDVESSV-TFLALHEQVR--MSEHNTELV 552
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
K L + +L Q K L++ K +E+LS+A V+ T GA DP + ++ +++
Sbjct: 553 KLSQLKNEVGELSSQDEKKLRQLTKAAEREILSNADVICCTCVGAGDPRLSKMKFRNVLI 612
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
K+ +L GD QL PVI+++KA + G+ SL ER L +
Sbjct: 613 DESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNRSLFERLINLK--I 670
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
L TQYRM+ ++ + S Y G+L + T + D F P +T+ P++
Sbjct: 671 NPIPLKTQYRMHPCLSEFPSNMFYDGTLQNGITHEQRVRKDVDFPWP--VTEMPMMFWS- 727
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
++G EE + +GT S+ N EA V V AGV PS I V +PY Q
Sbjct: 728 -------NIGHEE-ISTSGT-SYLNRTEASNVEKTVTRFFKAGVRPSEIGVITPYEGQRS 778
Query: 576 HLRERLDD-----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
++ + + VEVA++D+FQGRE D +++S VRSN +GFL D RR+NV
Sbjct: 779 YIVSTMQNSGTYKKEMYKDVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLSDPRRLNV 838
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + + LL H +
Sbjct: 839 ALTRAKYGLVILGNPKVLSKHELWHNLLAHFK 870
>gi|304313994|ref|YP_003849141.1| DNA helicase [Methanothermobacter marburgensis str. Marburg]
gi|302587453|gb|ADL57828.1| predicted DNA helicase [Methanothermobacter marburgensis str.
Marburg]
Length = 654
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 203/713 (28%), Positives = 328/713 (46%), Gaps = 140/713 (19%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAP-QELCDT 71
+ + +R+ +L+ +ER+AE+ E+ + +P + + I L +G+ +EL
Sbjct: 1 MKSYIKRLIKLVEMEREAEINAMMNEIRRL-SPQKRERVGRAINGL--NGKVTGREL--- 54
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFV 131
G HLV + G T +S GD+V + SRG S + G V
Sbjct: 55 --------------GFHLVKY---GRREPIDTQISVGDLVLI----SRGNPLRSDLTGTV 93
Query: 132 HNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGL 191
G+ I VALES + ++VR+D A+ +T++R + L +N
Sbjct: 94 AAKGKR--FIVVALES------VPRWALRNVRVDL---YANDITFQRMIDNLRGAGRNVF 142
Query: 192 HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
+ L GD++ + + ++ V + + SQ++AI L
Sbjct: 143 R-------VLRFLLGDEKPSG----HQIVEFEPVDPE------LNRSQREAIMRALGSD- 184
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+I GP GTGKT L E+I + V++G RVLVTA +NAAVDN++E ++ L VR+G+
Sbjct: 185 DFFLIHGPFGTGKTRTLHELIRQEVRRGNRVLVTAESNAAVDNLLEGIAG-HLRCVRLGH 243
Query: 312 PARISPAVASKSLGEIVKS------------KLASFVAEFERKKSDLRKDLRQCLKDDSL 359
P R+S ++L +++ ++ + E ER LR+ L D +
Sbjct: 244 PQRVSRTNLQETLAYKLENHPEYRRVLEYQERIDGLIEERERHHKPT-PQLRRGLTDSQI 302
Query: 360 ---------AAGI--------------RQLLKQLGKTLKKKEKETVKEVLSSAQVVLATN 396
A GI Q + +L + +++ E E V ++ ++QVVLATN
Sbjct: 303 MINATKRRGARGISPNVMISMARWIEVNQQIDELHRKMQEIEVEIVDRIIRNSQVVLATN 362
Query: 397 TGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALE 437
+ AA I + FD+ R +LAGD QL P IL+ +A E
Sbjct: 363 SSAALEYIDNV-KFDVAIVDEASQATIPSILIPLSRAPRFVLAGDHRQLPPTILNPEASE 421
Query: 438 GGIGVSLLER-AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ V+L E + E + L QYRMN AI + ++E YGG + + ++ ++D
Sbjct: 422 --LEVTLFEELIGSYPEN--SWMLNCQYRMNPAIMEFPNREFYGGRIRAHPSLEEISVLD 477
Query: 497 T-----PFVKP--TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVH 549
P P + P+L +DT +G E L G+ S N EA++ V
Sbjct: 478 VISTEIPDSMPHRKLAERDPVLFIDTS------KVGRGER-RLKGSTSIQNPLEADLAVI 530
Query: 550 HVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIIS 609
+LI GV I + +PY QV D + GVEV ++D FQGRE + +IIS
Sbjct: 531 IAGALIRMGVKEEEIGIITPYDDQV-------DLISSMTGVEVNSVDGFQGREREVIIIS 583
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
MVRSN+ G +GFL D RR+NV++TRA + + ++ D+ T+ + RL+ + R
Sbjct: 584 MVRSNSEGNIGFLRDLRRLNVSLTRARRKLIIIGDTGTLSSHPSYRRLIEYCR 636
>gi|116328077|ref|YP_797797.1| DNA and RNA helicase subunit [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116120821|gb|ABJ78864.1| DNA and RNA helicase subunit [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
Length = 637
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 234/459 (50%), Gaps = 49/459 (10%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ + + SQK A+ L + +I GPPGTGKT L EII++ V + ++VLV+APT++
Sbjct: 185 LNSSLNPSQKNAV-LRCVLSEDIAVIHGPPGTGKTTTLTEIISQIVAEEKKVLVSAPTHS 243
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEFER 341
A D +VE +S G++++R+G+PARIS +L G+++ ++ V E +
Sbjct: 244 ACDLLVESISAKGISVLRLGHPARISDTALHTTLDYKLFHHSDGKLL-NEYRRDVIEISK 302
Query: 342 KKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
+ +++ + K+D + Q +K+L KT++ EK + ++SS V+++T +A
Sbjct: 303 QAKKYKRNFGEKEKEDR--KNLFQEVKELKKTIRSMEKGLIDSLISSHSVIVSTPVASAR 360
Query: 402 PLI--RRLD--TFD--------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVS 443
++ RR D D L R ILAGD QL P + S K + +
Sbjct: 361 SVLEGRRFDFCVLDESSQALEPATWIPILKSDRVILAGDHKQLPPTLFSEK---NSLEFT 417
Query: 444 LLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
L E+AA L L TQYRM D IAS+ S E Y L S + + F K
Sbjct: 418 LFEKAAERLETSGRVFMLDTQYRMKDEIASFPSMEFYSNRLKSGRPGPEKI---SNFPK- 473
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPS 562
T+ + L +DT + ++A S N EA++ V L
Sbjct: 474 TFPFRDALQWIDT---------AGTDSEEVAVDDSLTNPFEADLQVRLCTLLQENNWPEE 524
Query: 563 AIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
I + SPY AQV+ L E+L + + ++V+TIDSFQGRE + + VRSN+ G GFL
Sbjct: 525 EITILSPYRAQVRLLSEKLQE-AGLSKIQVSTIDSFQGRENRCIFLGFVRSNSEGRSGFL 583
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+SRR+NV +TRA + + DSST+ + FL+R +R I
Sbjct: 584 KESRRINVGMTRAKDLLLCIGDSSTLLEDPFLSRFIRFI 622
>gi|418747088|ref|ZP_13303398.1| AAA domain protein [Leptospira santarosai str. CBC379]
gi|418755612|ref|ZP_13311809.1| AAA domain protein [Leptospira santarosai str. MOR084]
gi|409964074|gb|EKO31973.1| AAA domain protein [Leptospira santarosai str. MOR084]
gi|410791882|gb|EKR89827.1| AAA domain protein [Leptospira santarosai str. CBC379]
Length = 634
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 239/472 (50%), Gaps = 75/472 (15%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + +DSQK A+ L + I+ GPPGTGKT L EI+ + V++G +VLV+APT
Sbjct: 183 GRINPSLNDSQKNAV-LHCVLSEDVSIVHGPPGTGKTTTLTEIVNQLVEEGRKVLVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
++A D +VE +S G++++R+G+PARI AV + +L G+++ ++ V E
Sbjct: 242 HSACDLLVESISAKGISVLRLGHPARIGEAVLNSTLDYKLFHHSDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
R+ +++ + K+ + Q +K+L KT++ EK + ++SS V+++T +
Sbjct: 301 SRQAKKYKRNFGE--KEREERRNLFQEVKELKKTIRSMEKGLIDSLISSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILS-RKALEGG 439
+ ++ TFD L R ILAGD QL P + S R +LE
Sbjct: 359 SRSVLEG-KTFDFCVLDESSQALEPASWIPILKSDRVILAGDHKQLPPTLFSDRNSLE-- 415
Query: 440 IGVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+L E+AA L L TQYRM D I+S++S E Y L S ++
Sbjct: 416 --TTLFEKAAERLEFSNRVFLLDTQYRMKDEISSFSSMEFYSNRLKSGRPMSER------ 467
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHH 550
+ P P+G+ + +D AGT S N EA++ V
Sbjct: 468 ------TSNFP-----ETFPFGN----AFQWIDTAGTDSEEVSMDDSIINPFEADLEVRL 512
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG---VEVATIDSFQGREADAVI 607
L I + SPY AQV+ L E+L + AG V+V+TIDSFQGRE ++
Sbjct: 513 CILLQENNWPEEEITILSPYRAQVRLLSEKLRE----AGLFKVQVSTIDSFQGRENRCIL 568
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L++
Sbjct: 569 LGFVRSNPEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLLEDPFLSKLIQ 620
>gi|414886785|tpg|DAA62799.1| TPA: hypothetical protein ZEAMMB73_068361 [Zea mays]
Length = 1251
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 215/448 (47%), Gaps = 71/448 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 520 QKPVSLIQGPPGTGKTVTSGAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 579
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R +S V +L V+ S +EF + Q LKD+ +L
Sbjct: 580 LCAKSREAVSSPVEHLTLHYQVRHLDTSEKSEFHK---------LQQLKDEQ-----GEL 625
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD--------------- 411
K K ++ T +E+L SA V+ T GA DP RL F
Sbjct: 626 SSSDEKKYKALKRATEREILQSADVICCTCVGAGDP---RLSNFRFRQVLIDESTQATEP 682
Query: 412 -------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L QY
Sbjct: 683 ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVIL--GVKPFRLQVQY 740
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM+ ++ + S Y G+L + TV F P + P+ + +
Sbjct: 741 RMHPCLSEFPSNCFYEGTLQNGVTVNERHSSGIDFPWP--VPNRPMFFY--------VQM 790
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH-------- 576
G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 791 GQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRN 848
Query: 577 --LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA+TR
Sbjct: 849 GSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTR 903
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIR 662
A + ++ + + LL H +
Sbjct: 904 ARYGIVILGNPKVLSKQPLWNSLLTHYK 931
>gi|421110188|ref|ZP_15570689.1| AAA domain protein [Leptospira santarosai str. JET]
gi|410804373|gb|EKS10490.1| AAA domain protein [Leptospira santarosai str. JET]
Length = 634
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 239/472 (50%), Gaps = 75/472 (15%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + +DSQK A+ L + I+ GPPGTGKT L EI+ + V++G ++LV+APT
Sbjct: 183 GRINPSLNDSQKNAV-LHCVLSEDVSIVHGPPGTGKTTTLTEIVNQLVEEGRKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
++A D +VE +S G++++R+G+PARI AV + +L G+++ ++ V E
Sbjct: 242 HSACDLLVESISAKGISVLRLGHPARIGEAVLNSTLDYKLFHHSDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
R+ +++ + K+ + Q +K+L KT++ EK + ++SS V+++T +
Sbjct: 301 SRQAKKYKRNFGE--KEREERRNLFQEVKELKKTIRSMEKGLIDSLISSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILS-RKALEGG 439
+ ++ TFD L R ILAGD QL P + S R +LE
Sbjct: 359 SRSVLEG-KTFDFCVLDESSQALEPASWIPILKSDRVILAGDHKQLPPTLFSDRNSLE-- 415
Query: 440 IGVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+L E+AA L L TQYRM D I+S++S E Y L S ++
Sbjct: 416 --TTLFEKAAERLEFSNRVFLLDTQYRMKDEISSFSSMEFYSNRLKSGRPMSER------ 467
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHH 550
+ P P+G+ + +D AGT S N EA++ V
Sbjct: 468 ------TSNFP-----ETFPFGN----AFQWIDTAGTDSEEVSMDDSIINPFEADLEVRL 512
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG---VEVATIDSFQGREADAVI 607
L I + SPY AQV+ L E+L + AG V+V+TIDSFQGRE V+
Sbjct: 513 CILLQENNWPEEEITILSPYRAQVRLLSEKLRE----AGLFKVQVSTIDSFQGRENRCVL 568
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L++
Sbjct: 569 LGFVRSNPEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLLEDPFLSKLIQ 620
>gi|358388726|gb|EHK26319.1| hypothetical protein TRIVIDRAFT_218486 [Trichoderma virens Gv29-8]
Length = 1083
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/438 (31%), Positives = 219/438 (50%), Gaps = 53/438 (12%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II A G +VLV AP+N AVD + E++ GL +VR
Sbjct: 461 QKPLSLIQGPPGTGKTVTSATIIYHLAKMSGSQVLVCAPSNVAVDQLCERVHRTGLKVVR 520
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ +R E V+S + SF+A E+ + + + + +K L + +L
Sbjct: 521 LTAKSR-----------EDVESSV-SFLALHEQVR--MSEHNSELVKLSQLKVEVGELSS 566
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--------------- 413
Q K L++ K +E+LS+A V+ T GA DP + ++ +++
Sbjct: 567 QDEKKLRQLTKAAEREILSNADVICCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIP 626
Query: 414 ----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
K+ +L GD QL PVI+++KA + G+ SL ER L + L TQYRM+
Sbjct: 627 LVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNRSLFERLINLK--INPIPLKTQYRMHPC 684
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y G+L + T + D F P +T+ P++ ++G EE
Sbjct: 685 LSEFPSNMFYDGTLQNGITHEQRVRKDVDFPWP--VTEMPMMFWS--------NIGHEE- 733
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA- 588
+ +GT S+ N EA V V AGV PS I V +PY Q ++ + +
Sbjct: 734 ISTSGT-SYLNRTEASNVEKTVTRFFKAGVKPSEIGVITPYEGQRSYIVSTMQNSGTYKK 792
Query: 589 ----GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ +
Sbjct: 793 ELYKDVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLSDPRRLNVALTRAKYGLVILGN 852
Query: 645 SSTICHNTFLARLLRHIR 662
+ + LL H +
Sbjct: 853 PKVLSKHELWHNLLAHFK 870
>gi|356541331|ref|XP_003539131.1| PREDICTED: regulator of nonsense transcripts 1 homolog [Glycine
max]
Length = 1270
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 214/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RP+ +IQGPPGTGKT ++ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 499 QRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 558
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERK------KSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ + KS+L K Q LKD+
Sbjct: 559 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSDKSELHK--LQQLKDEQ---- 601
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+ SA V+ T GA DP RL F
Sbjct: 602 -GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP---RLANFRFRQVLIDESTQ 657
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 658 ATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GVKPIRL 715
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ ++ + S Y G+L + TV F P + P+
Sbjct: 716 QVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWP--VPNRPMFFY------- 766
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 767 -VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNY 823
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 824 MSRNGALRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 878
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 879 ALTRARYGIVILGNPKVLSKQPLWNSLLTHYK 910
>gi|167516556|ref|XP_001742619.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779243|gb|EDQ92857.1| predicted protein [Monosiga brevicollis MX1]
Length = 856
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 166/567 (29%), Positives = 258/567 (45%), Gaps = 94/567 (16%)
Query: 137 DGCTISVALESRHGD-PT------FSKLFGKSVRIDRIQGLADTLTY-ERNCEALMLLQK 188
D + ALE R+ D PT + KS+ DR+Q T ER+ A + Q
Sbjct: 285 DNHSEEYALELRNKDVPTQCTQNFMVEFIWKSITFDRMQNAMKTFAVDERSVSAHIYHQL 344
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLN 248
G H+ P++ V + V L E + SQ +AI L
Sbjct: 345 LG-HQIEPALIKVT--MPKRFSVKGLPE------------------LNHSQIEAIRAVL- 382
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+RPL +IQGPPGTGKT ++ VQQ +VLV AP+N AVD + EK+ G+ ++
Sbjct: 383 -QRPLSLIQGPPGTGKTVTSASLVYHLVQQKHGKVLVCAPSNIAVDQLTEKIHRTGVKVL 441
Query: 308 RVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
RV +R E ++++ + + + ++ LK L + +L
Sbjct: 442 RVCAKSR-----------EEADTRVSFLSLHNQVRTMKGHPEYQKLLK---LKDAVGELS 487
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL--DTFDLV------------ 413
+ K + ++ +E+L SA V+ T A D RR+ TF V
Sbjct: 488 EADEKRFRTLQRIIEQELLRSADVICCTCAAAGD---RRVSGQTFRTVLIDEATQSTEPE 544
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
++C++ GD CQL PV++ +KA G+ SL ER L G+ +L QYR
Sbjct: 545 CMLPLVLGTRQCVMVGDHCQLGPVVMCKKAASAGLSQSLFERCVLL--GIRPVRLQVQYR 602
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
M+ ++ + S Y GSL + T + L+ VD P+ P + P++ Y S+
Sbjct: 603 MHPCLSEFPSNTFYEGSLQNGVTASERLMPAVDFPWPVP----ETPMMF------YASMG 652
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD- 582
+E + +GT S+ N EA V V + +GV+P I + +PY Q ++ + +
Sbjct: 653 ---QEEISASGT-SYLNRTEAANVEKMVTRFLKSGVTPEQIGIVTPYEGQRAYIVQYMSF 708
Query: 583 ----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
P VEVA++D+FQGRE D +I+S RSN +GFL D RR+NVA+TRA
Sbjct: 709 NGTLRQPLYEAVEVASVDAFQGREKDYIILSCTRSNEHQGIGFLNDPRRLNVALTRAKYG 768
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFG 665
+ +V + + LL H + G
Sbjct: 769 IIIVGNPKVLSKQALWNNLLVHYKENG 795
>gi|414886783|tpg|DAA62797.1| TPA: hypothetical protein ZEAMMB73_068361 [Zea mays]
Length = 1272
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 215/448 (47%), Gaps = 71/448 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 520 QKPVSLIQGPPGTGKTVTSGAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 579
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R +S V +L V+ S +EF + Q LKD+ +L
Sbjct: 580 LCAKSREAVSSPVEHLTLHYQVRHLDTSEKSEFHK---------LQQLKDEQ-----GEL 625
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD--------------- 411
K K ++ T +E+L SA V+ T GA DP RL F
Sbjct: 626 SSSDEKKYKALKRATEREILQSADVICCTCVGAGDP---RLSNFRFRQVLIDESTQATEP 682
Query: 412 -------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L QY
Sbjct: 683 ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVIL--GVKPFRLQVQY 740
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM+ ++ + S Y G+L + TV F P + P+ + +
Sbjct: 741 RMHPCLSEFPSNCFYEGTLQNGVTVNERHSSGIDFPWP--VPNRPMFFY--------VQM 790
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH-------- 576
G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 791 GQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRN 848
Query: 577 --LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA+TR
Sbjct: 849 GSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTR 903
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIR 662
A + ++ + + LL H +
Sbjct: 904 ARYGIVILGNPKVLSKQPLWNSLLTHYK 931
>gi|346326262|gb|EGX95858.1| nonsense transcript regulator [Cordyceps militaris CM01]
Length = 1084
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 153/487 (31%), Positives = 234/487 (48%), Gaps = 64/487 (13%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGT 262
TL G + ++ N WS L + + SQ AI L K PL +IQGPPGT
Sbjct: 420 TLLGHDVHLQPMKSNLPKKWSAPGLPDL-----NQSQVDAIRSVLQK--PLSLIQGPPGT 472
Query: 263 GKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR--ISPAV 319
GKT II + G +VLV AP+N AVD + E++ GL +VR+ +R + +V
Sbjct: 473 GKTVTSATIIYHLSKMSGNQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESSV 532
Query: 320 ASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEK 379
+ +L E V+ ++ +EF + L + AG +L+ Q K ++ K
Sbjct: 533 SFLALHEQVR--MSEHNSEFAK------------LSQLKIEAG--ELISQDEKKFRQLTK 576
Query: 380 ETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------TFDLVGKRCILA 420
+E+L++A VV T GA DP + ++ L K+ +L
Sbjct: 577 AAEREILTNADVVCCTCVGAGDPRLSKIKFRSVLIDESTQSAEPECIIPLMLGCKQVVLV 636
Query: 421 GDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYG 480
GD QL PVI+++KA + G+ SL ER L + L TQYRM+ ++ + S Y
Sbjct: 637 GDHKQLGPVIMNKKAAKAGLSQSLFERLMQLR--LQPILLNTQYRMHPCLSEFPSNMFYD 694
Query: 481 GSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540
GSL + T + D F P + + P++ ++G EE + +GT S+ N
Sbjct: 695 GSLQNGVTQEQRIRKDVDFPWP--VAEMPMMFWS--------NIGNEE-ISTSGT-SYLN 742
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA-----GVEVATI 595
EA V V AGV P+ I V +PY Q ++ + + + GVEVA++
Sbjct: 743 RTEASNVEKIVTRFFKAGVKPAEIGVITPYEGQRSYIVTTMQNSGTSKKDLYKGVEVASV 802
Query: 596 DSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLA 655
D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ + + +
Sbjct: 803 DAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVILGNPRVLSKHELWY 862
Query: 656 RLLRHIR 662
LL H R
Sbjct: 863 NLLTHFR 869
>gi|410451573|ref|ZP_11305576.1| AAA domain protein [Leptospira sp. Fiocruz LV3954]
gi|410014617|gb|EKO76746.1| AAA domain protein [Leptospira sp. Fiocruz LV3954]
Length = 634
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 239/472 (50%), Gaps = 75/472 (15%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + +DSQK A+ L + I+ GPPGTGKT L EI+ + V++G ++LV+APT
Sbjct: 183 GRINPSLNDSQKNAV-LHCVLSEDVSIVHGPPGTGKTTTLTEIVNQLVEEGRKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
++A D +VE +S G++++R+G+PARI AV + +L G+++ ++ V E
Sbjct: 242 HSACDLLVESISAKGISVLRLGHPARIGEAVLNSTLDYKLFHHSDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
R+ +++ + K+ + Q +K+L KT++ EK + ++SS V+++T +
Sbjct: 301 SRQAKKYKRNFGE--KEREERRNLFQEVKELKKTIRSMEKGLIDSLISSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILS-RKALEGG 439
+ ++ TFD L R ILAGD QL P + S R +LE
Sbjct: 359 SRSVLEG-KTFDFCVLDESSQALEPASWIPILKSDRVILAGDHKQLPPTLFSDRNSLE-- 415
Query: 440 IGVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+L E+AA L L TQYRM D I+S++S E Y L S ++
Sbjct: 416 --TTLFEKAAERLEFSNRVFLLDTQYRMKDEISSFSSMEFYSNRLKSGRPMSER------ 467
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHH 550
+ P P+G+ + +D AGT S N EA++ V
Sbjct: 468 ------TSNFP-----ETFPFGN----AFQWIDTAGTDSEEVSMDDSIINPFEADLEVRL 512
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG---VEVATIDSFQGREADAVI 607
L I + SPY AQV+ L E+L + AG V+V+TIDSFQGRE V+
Sbjct: 513 CILLQENDWPEEEITILSPYRAQVRLLSEKLRE----AGLFKVQVSTIDSFQGRENRCVL 568
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L++
Sbjct: 569 LGFVRSNPEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLLEDPFLSKLIQ 620
>gi|356497066|ref|XP_003517385.1| PREDICTED: regulator of nonsense transcripts 1 homolog [Glycine
max]
Length = 1266
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 214/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RP+ +IQGPPGTGKT ++ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 496 QRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 555
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERK------KSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ + KS+L K Q LKD+
Sbjct: 556 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSDKSELHK--LQQLKDEQ---- 598
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+ SA V+ T GA DP RL F
Sbjct: 599 -GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP---RLANFRFRQVLIDESTQ 654
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 655 ATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GVKPIRL 712
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ ++ + S Y G+L + TV F P + P+
Sbjct: 713 QVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERKSSGIDFPWP--VPNRPMFFY------- 763
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 764 -VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNY 820
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 821 MSRNGALRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 875
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 876 ALTRARYGIVILGNPKVLSKQPLWNSLLTHYK 907
>gi|414886784|tpg|DAA62798.1| TPA: hypothetical protein ZEAMMB73_068361 [Zea mays]
Length = 1205
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 215/448 (47%), Gaps = 71/448 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 520 QKPVSLIQGPPGTGKTVTSGAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 579
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R +S V +L V+ S +EF + Q LKD+ +L
Sbjct: 580 LCAKSREAVSSPVEHLTLHYQVRHLDTSEKSEFHK---------LQQLKDEQ-----GEL 625
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD--------------- 411
K K ++ T +E+L SA V+ T GA DP RL F
Sbjct: 626 SSSDEKKYKALKRATEREILQSADVICCTCVGAGDP---RLSNFRFRQVLIDESTQATEP 682
Query: 412 -------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L QY
Sbjct: 683 ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVIL--GVKPFRLQVQY 740
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM+ ++ + S Y G+L + TV F P + P+ + +
Sbjct: 741 RMHPCLSEFPSNCFYEGTLQNGVTVNERHSSGIDFPWP--VPNRPMFFY--------VQM 790
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH-------- 576
G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 791 GQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRN 848
Query: 577 --LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA+TR
Sbjct: 849 GSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTR 903
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIR 662
A + ++ + + LL H +
Sbjct: 904 ARYGIVILGNPKVLSKQPLWNSLLTHYK 931
>gi|440792662|gb|ELR13871.1| mRNA decay factorlike protein [Acanthamoeba castellanii str. Neff]
Length = 1142
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 154/453 (33%), Positives = 221/453 (48%), Gaps = 73/453 (16%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT + + V+Q + +VLV AP+N AVD + EK+ GL +VR
Sbjct: 512 QKPLSLIQGPPGTGKTVTSASTVYQLVKQNQGQVLVCAPSNVAVDQLTEKIHATGLKVVR 571
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS--LAAGIR 364
+ +R +S V +L +VK +A K +L K Q LKDD L++
Sbjct: 572 LCAKSREAVSSPVEFLTLHYLVKH-----LASGSIDKGELAK--LQQLKDDQGELSSADE 624
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD------------- 411
+ K L +++++ E+L SA V+ T GA DP RL F
Sbjct: 625 KKFKSLKRSMER-------EILQSADVICCTCVGAGDP---RLTNFRFRQVLIDESTQAT 674
Query: 412 ---------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
L K+ I GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 675 EPECLLPLVLGAKQVIFVGDHCQLGPVIMCKKAARAGLSQSLFERLIML--GVRPIRLQV 732
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVA--SHLLVDTPFV---KPTWITQCPLLLLDTRL 517
QYRM+ ++ + S Y G+L + T A + +D P+ KP + C
Sbjct: 733 QYRMHPCLSEFPSNTFYEGTLQNGVTAAERNQGALDFPWPVPNKPMFFYNC--------- 783
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
LG EE + +GT S+ N EA + V + AGV+ + I V +PY Q +L
Sbjct: 784 ------LGQEE-ISSSGT-SYLNRNEAAVCEKIVTHFLQAGVTSAQIGVITPYEGQRAYL 835
Query: 578 ---RERLDDLPEA--AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
+R L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA+
Sbjct: 836 VNYMQRNGSLRSQLYKEIEVASVDSFQGREKDFIILSCVRSNEHQGIGFLNDPRRLNVAL 895
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
TRA V V+ ++ + LL H + G
Sbjct: 896 TRAKYGVVVLGNAKVLSRQPLWNNLLVHFKENG 928
>gi|414886782|tpg|DAA62796.1| TPA: hypothetical protein ZEAMMB73_068361 [Zea mays]
Length = 1273
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 215/448 (47%), Gaps = 71/448 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 520 QKPVSLIQGPPGTGKTVTSGAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 579
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R +S V +L V+ S +EF + Q LKD+ +L
Sbjct: 580 LCAKSREAVSSPVEHLTLHYQVRHLDTSEKSEFHK---------LQQLKDEQ-----GEL 625
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD--------------- 411
K K ++ T +E+L SA V+ T GA DP RL F
Sbjct: 626 SSSDEKKYKALKRATEREILQSADVICCTCVGAGDP---RLSNFRFRQVLIDESTQATEP 682
Query: 412 -------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L QY
Sbjct: 683 ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVIL--GVKPFRLQVQY 740
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM+ ++ + S Y G+L + TV F P + P+ + +
Sbjct: 741 RMHPCLSEFPSNCFYEGTLQNGVTVNERHSSGIDFPWP--VPNRPMFFY--------VQM 790
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH-------- 576
G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 791 GQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRN 848
Query: 577 --LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA+TR
Sbjct: 849 GSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTR 903
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIR 662
A + ++ + + LL H +
Sbjct: 904 ARYGIVILGNPKVLSKQPLWNSLLTHYK 931
>gi|400597184|gb|EJP64919.1| Regulator of nonsense transcripts 1 [Beauveria bassiana ARSEF 2860]
Length = 1083
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 157/487 (32%), Positives = 234/487 (48%), Gaps = 64/487 (13%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGT 262
TL G + ++ N WS L + + SQ AI L K PL +IQGPPGT
Sbjct: 420 TLLGHDVQLQPMKSNLPKKWSAPGLPDL-----NQSQVDAIRSVLQK--PLSLIQGPPGT 472
Query: 263 GKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR--ISPAV 319
GKT II + G +VLV AP+N AVD + E++ GL +VR+ +R + +V
Sbjct: 473 GKTVTSATIIYHLSKISGNQVLVCAPSNVAVDQLCERIHRTGLKVVRLTAKSREDVESSV 532
Query: 320 ASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEK 379
+ +L E V+ ++ +EF K S L+ + AG +L Q K ++ K
Sbjct: 533 SFLALHEQVR--MSEHNSEFA-KLSQLKNE-----------AG--ELSSQDEKKFRQLTK 576
Query: 380 ETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------TFDLVGKRCILA 420
+E+L++A VV T GA DP + +L L K+ +L
Sbjct: 577 AAEREILNNADVVCCTCVGAGDPRLSKLKFRSVLIDESTQSAEPECIIPLMLGCKQVVLV 636
Query: 421 GDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYG 480
GD QL PVI+++KA + G+ SL ER L + L TQYRM+ ++ + S Y
Sbjct: 637 GDHKQLGPVIMNKKAAKAGLSQSLFERLMQLR--LQPILLNTQYRMHPCLSEFPSNMFYD 694
Query: 481 GSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540
GSL + T + D F P + + P++ ++G EE + +GT S+ N
Sbjct: 695 GSLQNGVTQEQRIRKDVDFPWP--VAEMPMMFWS--------NIGNEE-ISTSGT-SYLN 742
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA-----GVEVATI 595
EA V V AGV PS I V +PY Q ++ + + + VEVA++
Sbjct: 743 RTEASNVEKIVTRFFKAGVKPSEIGVITPYEGQRSYIVTTMQNAGTSKKEYYKSVEVASV 802
Query: 596 DSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLA 655
D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA V ++ + + +
Sbjct: 803 DAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGVVILGNPRVLSKHELWY 862
Query: 656 RLLRHIR 662
LL H R
Sbjct: 863 NLLTHFR 869
>gi|419759476|ref|ZP_14285775.1| DNA helicase [Thermosipho africanus H17ap60334]
gi|407515486|gb|EKF50231.1| DNA helicase [Thermosipho africanus H17ap60334]
Length = 639
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 181/642 (28%), Positives = 301/642 (46%), Gaps = 123/642 (19%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G++L+ F G ++ T ++ GD V + ++G +D + V
Sbjct: 55 GLYLIKF---GRSKIIETEINVGDEVLIN--KNKGKVR------------DDFKGVVVEK 97
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLF 205
SR + KL KS + RI A +TY+R + L L +NG
Sbjct: 98 GSRFIVVSLDKLLPKSFKEVRIDLYASDVTYKRQIDNLKNLSENG--------------- 142
Query: 206 GDKEDVTWLEENDLADWSEVKLDGI-------MGKTFDDSQKKAIALGLNKKRPLLIIQG 258
K+ ++++ ++K D I K + SQK +I+ L+ K +I G
Sbjct: 143 --KKVLSYI-------LKDIKFDDIKKIDFKPFDKNLNYSQKLSISKALSSKN-FFLIHG 192
Query: 259 PPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPA 318
P GTGKT L E I + V++G++VLV+A +N AVDN+VE+LS+ ++ VR+G+P+R+S
Sbjct: 193 PFGTGKTRTLVEYILQEVKRGKKVLVSADSNMAVDNLVERLSE-KVSHVRIGHPSRVSKK 251
Query: 319 VASKS-LGEIVKSKLASFVAEFERKKSDL---RKDLRQCLKDDSLAAGIRQLLK--QLGK 372
+ S + L +I K K + + + + S+L R+ ++ ++ Q+LK + GK
Sbjct: 252 LLSSTLLFKIEKHKRYKELYKLKEEFSNLIEKREKFQKPIQKWRRGLSDEQILKLSKEGK 311
Query: 373 TLK----------------------------KKEKETVKEVLSSAQVVLATNTGAADPLI 404
T + K E+E K+++ ++ VV +TN+ + ++
Sbjct: 312 TTRGIPLKMINAMAEWITLNNKIEKIKEEMEKLEEEISKDIIENSSVVFSTNSSSYSEIL 371
Query: 405 RRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
+ + FD+V GK+ +LAGD QL P I+S KA E + ++L
Sbjct: 372 KGFE-FDVVVIDEAAQTTIPSVLIPLSKGKKFVLAGDHKQLPPTIISEKAKE--LSITLF 428
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI 505
E + + L QYRMN+ I + + E Y G L S + + L D F I
Sbjct: 429 EILVDKYPH-MKELLNIQYRMNEKIMEFPNIEFYNGKL--KSGIGNITLKDLGFEGSDEI 485
Query: 506 T--QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA 563
T + ++ +DT+ S + + S++NE EA IV V + G++
Sbjct: 486 TKPENTIIFIDTK------SRKNKTENQKKDSTSYFNELEANIVKDIVEKFLKLGLNREY 539
Query: 564 IAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
I V +PY QV ++ GVEV T+D FQGRE + +IIS VRSN +GFL
Sbjct: 540 IGVITPYDDQVDLIKSF------NLGVEVNTVDGFQGREKEVIIISFVRSNQRKELGFLT 593
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
D RR+NV+ITRA + + + DSST+ ++ + + ++ G
Sbjct: 594 DLRRLNVSITRAKRKLICIGDSSTLENHPTYKKFIEFVKNKG 635
>gi|359686101|ref|ZP_09256102.1| DNA and RNA helicase subunit [Leptospira santarosai str.
2000030832]
Length = 634
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/472 (32%), Positives = 239/472 (50%), Gaps = 75/472 (15%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + +DSQK A+ L + I+ GPPGTGKT L EI+ + V++G ++LV+APT
Sbjct: 183 GRINPSLNDSQKNAV-LHCVLSEDVSIVHGPPGTGKTTTLTEIVNQLVEEGRKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
++A D +VE +S G++++R+G+PARI AV + +L G+++ ++ V E
Sbjct: 242 HSACDLLVESISAKGISVLRLGHPARIGEAVLNSTLDYKLFHHSDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
R+ +++ + K+ + Q +K+L KT++ EK + ++SS V+++T +
Sbjct: 301 SRQAKKYKRNFGE--KEREERRNLFQEVKELKKTIRSMEKGLIDSLISSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILS-RKALEGG 439
+ ++ TFD L R ILAGD QL P + S R +LE
Sbjct: 359 SRSVLEG-KTFDFCVLDESSQALEPASWIPILKSDRVILAGDHKQLPPTLFSDRNSLE-- 415
Query: 440 IGVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
+L E+AA L L TQYRM D I+S++S E Y L S ++
Sbjct: 416 --TTLFEKAAERLEFSNRVFLLDTQYRMKDEISSFSSMEFYSNRLKSGRPMSER------ 467
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHH 550
+ P P+G+ + +D AGT S N EA++ V
Sbjct: 468 ------TSNFP-----ETFPFGN----AFQWIDTAGTDSEEVSMDDSIINPFEADLEVRL 512
Query: 551 VFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG---VEVATIDSFQGREADAVI 607
L I + SPY AQV+ L E+L + AG V+V+TIDSFQGRE ++
Sbjct: 513 CILLQENNWPEEEITILSPYRAQVRLLSEKLRE----AGLFKVQVSTIDSFQGRENRCIL 568
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L++
Sbjct: 569 LGFVRSNPEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLLEDPFLSKLIQ 620
>gi|85101908|ref|XP_961233.1| ATP-dependent helicase NAM7 [Neurospora crassa OR74A]
gi|18202963|sp|Q9HEH1.1|RENT1_NEUCR RecName: Full=Regulator of nonsense transcripts 1 homolog
gi|11595520|emb|CAC18314.1| probable nonsense-mediated mRNA decay protein [Neurospora crassa]
gi|28922775|gb|EAA31997.1| ATP-dependent helicase NAM7 [Neurospora crassa OR74A]
Length = 1093
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 142/437 (32%), Positives = 215/437 (49%), Gaps = 55/437 (12%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT II A +VLV AP+N AVD + E++ GL +VR+
Sbjct: 471 PLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLCERIHRTGLKVVRLT 530
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+R E V+S + SF+A E+ + + K+L +K L +L Q
Sbjct: 531 AKSR-----------EDVESSV-SFLALHEQVRMNTTNKELDGLVK---LKTETGELSSQ 575
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
K K+ ++ +E+L +A VV T GA DP + ++ +++
Sbjct: 576 DEKRFKQLTRQAEREILQNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPL 635
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
K+ +L GD QL PVI+++KA + G+ SL ER L +L QYRM+ +
Sbjct: 636 VLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLQ--FTPIRLKVQYRMHPCL 693
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ + S Y GSL + T A L D F P + + P++ +LG EE +
Sbjct: 694 SEFPSNMFYEGSLQNGVTAAERLRKDVDFPWP--VPETPMMFWS--------NLGNEE-I 742
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-----P 585
+GT S+ N EA V V AGV P+ I V +PY Q ++ + +
Sbjct: 743 SASGT-SYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKE 801
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ +
Sbjct: 802 SYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNP 861
Query: 646 STICHNTFLARLLRHIR 662
+C + LL H +
Sbjct: 862 KVLCKHELWHHLLVHFK 878
>gi|50293567|ref|XP_449195.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528508|emb|CAG62165.1| unnamed protein product [Candida glabrata]
Length = 695
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 182/659 (27%), Positives = 291/659 (44%), Gaps = 106/659 (16%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFV 131
I NL V ++ TGL G LV+ + + L GD+V ++ + C QG V
Sbjct: 44 ISNLTVTNSRTGLAG-KLVIELAQTQSTPVSSDLKNGDIVIIKPYSKKEDNDQQC-QGVV 101
Query: 132 HNL--GEDGCT--ISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEAL---- 183
+ E T S+A+ + S + +T+TY+R L
Sbjct: 102 VKISNAESNSTSPTSLAIAIDESQENIATTMIHSNEKFYVMKTVNTVTYDRMNSTLRKLK 161
Query: 184 -------------MLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGI 230
+LL G+ K SI K ++ + +EN
Sbjct: 162 EFKEKSISNPIIDILLPTEGVKKLRASIPN-----AKKSNIQFFDEN------------- 203
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE--RVLVTAPT 288
+DSQK AI + K L II GPPGTGKT + E+I + + + RVLV AP+
Sbjct: 204 ----LNDSQKYAIRFSMENK--LSIIHGPPGTGKTYTVVELIRQLISKDSTSRVLVCAPS 257
Query: 289 NAAVDNMVEKLSDVGLN---IVRVGNPARISPAVASKSLGEIVK--SKLASFVAEFERKK 343
N AVD ++E+LS + ++R+G+PAR+ SL + K + AS + + +
Sbjct: 258 NIAVDTILERLSKSIKDKRWLLRIGHPARLLKTNWYHSLDILSKEGTDSASIINDISMEI 317
Query: 344 SDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD-- 401
+ ++ +K +KQL K L+ +E++ + +++ ++VV+AT G++
Sbjct: 318 TKTIASIK-SIKSSGERRKAWAEVKQLRKELRLRERKVINDLIKQSRVVVATLHGSSSRE 376
Query: 402 -----------------------------------PLIRRLDTFDLVGKRCILAGDQCQL 426
PLI L + + +LAGD QL
Sbjct: 377 LCNYYKSIEEGENDNLFDYVIIDEVSQSLEPQCWIPLISHLQS---KITKLVLAGDSKQL 433
Query: 427 APVILSRK--ALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI 484
P I + + +G +L +R ++ L QYRMN I ++SK MY G L
Sbjct: 434 PPTIKTNNNDKVMKVLGTTLFDRLVNMYGDEFKNLLNIQYRMNAKIMEFSSKAMYNGELK 493
Query: 485 SSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFY----N 540
+ S+V + +L D P V T P++ DT+ E+ L Y N
Sbjct: 494 ADSSVENIVLSDLPGVDSNEETDEPIIWYDTQGDDFPEVDEEEDELKSKSAKFLYSSKLN 553
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---DLPEAAGVEVATIDS 597
EA +V+HHV LI + V I + SPY AQV L++ ++ D P +E++++D
Sbjct: 554 TNEAYLVLHHVRKLIESNVQQDCIGIISPYNAQVSLLKKLVNGTEDSPVYPLIEISSVDG 613
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH--NTFL 654
FQGRE + +I+S+VRSN VGFL + RR+NVA+TR + + V+ + T+ N+FL
Sbjct: 614 FQGREKECIILSLVRSNDKAEVGFLKEQRRLNVAMTRPKRQLCVIGNIETLQRSGNSFL 672
>gi|374339063|ref|YP_005095799.1| DNA helicase [Marinitoga piezophila KA3]
gi|372100597|gb|AEX84501.1| DNA helicase, putative [Marinitoga piezophila KA3]
Length = 649
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 185/715 (25%), Positives = 320/715 (44%), Gaps = 134/715 (18%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
F +++ E + +E++AE++ + E+ E GRA I L
Sbjct: 3 FFEKLYEAIELEKEAEIQAMKNEIKLYKKERE------------KMGRA-------ITGL 43
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
+G +++V F G + T +S GD+V V S+G S + V +G
Sbjct: 44 SGKYLGREIGNLYIVKF---GRKKDIKTEISSGDIVLV----SKGDPLKSDLTATVTEVG 96
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
+ +S + P + K++R+D + +T++R +A++ ++
Sbjct: 97 KKYIIVSFS----EKIPVWV-YKSKNIRLDL---FLNEITFKRMQKAIL-----KMNYAE 143
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
+ + +F K T +++ + + + SQK+A+ + K + +
Sbjct: 144 NELKILKNIFTGKYKPTPIKKEKIK---------FFDNSLNKSQKEAVEKAIGSKE-IFL 193
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV-GLNIVRVGNPAR 314
I GPPGTGKT L EII + ++ ++VLVTA +NAA DN++ L I R+G+P R
Sbjct: 194 IHGPPGTGKTRTLTEIIIQEAKKEKKVLVTADSNAATDNILGNLIKYETFKICRLGHPGR 253
Query: 315 ISPAVASKSL----------GEIVKSKLASFVAEFERKKSDL------RKDL------RQ 352
+ + SL EIVK + + +R K + R+ L +
Sbjct: 254 VDEDLKKHSLYYIAENHEEYKEIVKIRDEAMQLSEKRDKIGIKPTPQNRRGLTDEQIEKY 313
Query: 353 CLKDDSLAAGIRQLLKQLGKTLK-------------KKEKETVKEVLSSAQVVLATNTGA 399
LKD ++K++ + +K + E+E +K+++ Q++++TN+ +
Sbjct: 314 ALKDRGTRGIFPDVMKKMYEWIKINNEVQKLFDKAREMEEELIKKIIEEYQIIVSTNSTS 373
Query: 400 ADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
+ + TFD+V GK+ I+ GD QL P IL+ K +E +
Sbjct: 374 GIDELENI-TFDVVVIDEASQSTEPSCYIPITHGKKIIMGGDHRQLPPTILN-KDVENIL 431
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL------ 494
+L ER + A L QYRMND I +++++ Y G L S+ V + L
Sbjct: 432 SKTLFERMINKYPSHSAI-LKVQYRMNDKIMQFSNQKFYNGILRSADNVYNQTLTLDLSE 490
Query: 495 VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL--AGTGSFYNEGEAEIVVHHVF 552
V+ K T P++ +DT E ++ G+ S YN EA+IV+
Sbjct: 491 VNDEKTKEILDT-TPIVFVDTS--------ANPERFEIYKKGSKSKYNPLEAKIVIELAT 541
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVR 612
L V + +PY Q+++L+E+ D V T+D FQGRE D +I+S+ R
Sbjct: 542 ILKEQNVD---FGIITPYKDQMKYLKEKTD-------FYVNTVDGFQGRENDVIILSLTR 591
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
SN G +GFL D RR+NVAITRA K + ++ D ST+ + L+ +I G++
Sbjct: 592 SNDEGTIGFLKDERRLNVAITRARKKLIIIGDISTLKNYPLFDELINYISLHGKI 646
>gi|258570655|ref|XP_002544131.1| ATP-dependent helicase NAM7 [Uncinocarpus reesii 1704]
gi|237904401|gb|EEP78802.1| ATP-dependent helicase NAM7 [Uncinocarpus reesii 1704]
Length = 1075
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 150/456 (32%), Positives = 218/456 (47%), Gaps = 61/456 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT +I + G +VLV AP+N AVD
Sbjct: 423 LNPSQVNAVKAVLQK--PLSLIQGPPGTGKTVTSATVIYHLAKLTGGQVLVCAPSNVAVD 480
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E + GL VRV +R E V+S + + + +D +L
Sbjct: 481 QLCECIHRTGLKTVRVTAKSR-----------EDVESPVRHLSLHEQVRNNDSNVEL--- 526
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL- 412
+K L + +L Q K K+ + KE+L++A V+ T GA DP RL F
Sbjct: 527 MKLTQLKNELGELSSQDEKKFKQLTRAAEKEILTNADVICCTCVGAGDP---RLAKFKFR 583
Query: 413 --------------------VG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
+G K+ +L GD QL PVI+++KA + G+ SL ER L
Sbjct: 584 TVLIDESTQSSEPECMIPLVMGCKQVVLVGDHLQLGPVIMNKKAAKAGLNQSLFERLVIL 643
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G +L QYRM+ ++S+ S Y GSL + T LL D F P I+ P++
Sbjct: 644 --GCAPIRLNVQYRMHPCLSSFPSNMFYDGSLQNGVTSDDRLLKDVDFPWP--ISDKPMM 699
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+LG EE + +GT S+ N EA V V AGV PSAI + +PY
Sbjct: 700 FWS--------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSAIGIITPYE 749
Query: 572 AQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
Q ++ + +EVA++D+FQGRE D +++S VRSN +GFL D R
Sbjct: 750 GQRSYVVSSMQLNGTYKKEAYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPR 809
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
R+NVA+TRA + ++ + + + LLRH +
Sbjct: 810 RLNVALTRAKYGLVILGNPKVLSKHPLWNYLLRHFK 845
>gi|47224512|emb|CAG08762.1| unnamed protein product [Tetraodon nigroviridis]
Length = 738
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 208/439 (47%), Gaps = 99/439 (22%)
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
+VL AP+N AVDN+VE+L+ + ++R+G+PAR+ ++ SL I+ + + +
Sbjct: 7 QVLCCAPSNVAVDNLVERLAQSKVKVLRLGHPARLLESIQKHSLDAIIAHSSNADIIDDI 66
Query: 341 RKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA 400
R+ D + ++ G+R+ L +L K LK +E + ++L SA VVL+TNTGA
Sbjct: 67 RRDIDKAVMGMKTMQKKGERVGLRRELTELRKELKTRETTAMTQILKSADVVLSTNTGAC 126
Query: 401 D--PL-IRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEG 438
D PL + FD V ++C+LAGD QL P I S+KA
Sbjct: 127 DDGPLKFLPAEHFDWVVIDECAQALESSCWIALLRARKCVLAGDYKQLPPTIKSQKAASK 186
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV--- 495
G+ VSL+ER ++ + LT QYRMN AI WAS +MY G L + +V SH+L
Sbjct: 187 GLSVSLMERLIQMYGDSVVRMLTVQYRMNSAIMEWASDQMYQGKLTAHGSVESHVLKWVG 246
Query: 496 -----------------------DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLD 531
D P V T PLLL+DT GC ++
Sbjct: 247 AWRVLFKHPLKRFYNKFVSSTQRDLPGVTCVEETSTPLLLIDT--------AGCGLNEME 298
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
+A S N+GE +IV H+ +L AG+ IAV +PY
Sbjct: 299 VADEQSKGNQGEVDIVELHIKALTEAGLKAKDIAVIAPY--------------------- 337
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
+ Q RE VGFL + RR+NVA+TRA +H+A+VCD+ T+ ++
Sbjct: 338 -----NLQARE----------------VGFLAEDRRINVAVTRARRHIAIVCDTRTVQNH 376
Query: 652 TFLARLLRHIRYFGRVKHA 670
FL L+ H+ G V+ A
Sbjct: 377 AFLKSLIDHVTQHGEVRTA 395
>gi|448086434|ref|XP_004196100.1| Piso0_005544 [Millerozyma farinosa CBS 7064]
gi|359377522|emb|CCE85905.1| Piso0_005544 [Millerozyma farinosa CBS 7064]
Length = 958
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 151/462 (32%), Positives = 223/462 (48%), Gaps = 66/462 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 408 LNSSQTNAVKSVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKLHKKRILVCAPSNVAVD 465
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ KL+ +GL +VR+ +R + K L + +K+ +K ++R L +
Sbjct: 466 HLANKLNLLGLKVVRLTAKSREDVESSVKHLA--LHNKVYDSAKGELKKLYNMRNSLGEL 523
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
+DD+ + L QL +T + + +LSS VV T GA D RRL F
Sbjct: 524 SEDDT------KRLIQLSRTAEMR-------LLSSCDVVCCTCVGAGD---RRLTRFKFR 567
Query: 414 ----------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
K+ IL GD QL PVIL ++A + G+ SL ER L
Sbjct: 568 TVLIDESTQASEPEVLIPIVKGAKQVILVGDHQQLGPVILEKRAGDAGLKQSLFERLVVL 627
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G + +L QYRMN ++ + S Y GSL + T L+ + F P + P++
Sbjct: 628 --GHVPIRLEVQYRMNPCLSEFPSNMFYEGSLQNGVTTKERLIKNASFPWP--VIDHPMM 683
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ G EE ++G+G SF N EA V + L G+ P I V +PY
Sbjct: 684 FW--------ANYGREE---ISGSGHSFLNRVEAMNVEKIITRLFKDGIGPEQIGVITPY 732
Query: 571 VAQVQHLRERLD---DLPEAAG----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
Q +L + + L E VE+ ++D+FQGRE D +I+S VR+N +GFL
Sbjct: 733 EGQRAYLIQYMSINSTLTEMKDRYLEVEITSVDAFQGREKDFIILSCVRANDQQTIGFLS 792
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
DSRR+NVA+TRA + ++ + +C NT LL H R G
Sbjct: 793 DSRRLNVALTRAKYGLVILGNPRALCRNTLWNHLLVHFREKG 834
>gi|302306557|ref|NP_982968.4| ABR022Cp [Ashbya gossypii ATCC 10895]
gi|299788573|gb|AAS50792.4| ABR022Cp [Ashbya gossypii ATCC 10895]
gi|374106171|gb|AEY95081.1| FABR022Cp [Ashbya gossypii FDAG1]
Length = 999
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 151/458 (32%), Positives = 222/458 (48%), Gaps = 61/458 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVD 293
+ SQ A+A L +RPL +IQGPPGTGKT I+ + ERVLV AP+N AVD
Sbjct: 417 LNTSQVNAVAHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKMHKERVLVCAPSNVAVD 474
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ KL D+GL +VR+ +R E V+S ++ +S + +
Sbjct: 475 HLAAKLRDMGLKVVRLTAKSR-----------EDVESSVSDLALHNLVARSSRGELKKLL 523
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-FDL 412
D + +L + ++ K ++T +L A VV T GA D +RLD+ F
Sbjct: 524 KLKDEVG----ELSVKDTRSFVKLVRKTESTILKKADVVCCTCVGAGD---KRLDSKFRT 576
Query: 413 V--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
V K+ +L GD QL PVIL R A + G+ SL ER +L
Sbjct: 577 VLIDESTQASEPECLIPIIKGAKQVVLVGDHQQLGPVILDRNAGDAGLKQSLFERLISL- 635
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
G + +L QYRMN ++ + S Y G+L + TV +VD+ F P I P++
Sbjct: 636 -GHVPIRLEVQYRMNPYLSEFPSNMFYEGTLQNGVTVEQRTVVDSSFPWP--ICDIPMMF 692
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
YG E + GT S+ N EA + L GV P I V +PY
Sbjct: 693 WAN---YG------REEISANGT-SYLNRIEAINCERIITRLFKDGVKPEQIGVVTPYEG 742
Query: 573 QVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N ++GFL D RR
Sbjct: 743 QRAYIIQYMQMNGSMDKDLYMTVEVASVDAFQGREKDYIILSCVRANDQQSIGFLTDPRR 802
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+NVA+TRA +A++ + +++C N+ LL H R G
Sbjct: 803 LNVALTRAKYGLAILGNPASLCRNSIWNHLLIHFREKG 840
>gi|169763354|ref|XP_001727577.1| regulator of nonsense transcripts 1 [Aspergillus oryzae RIB40]
gi|238489245|ref|XP_002375860.1| regulator of nonsense transcripts, putative [Aspergillus flavus
NRRL3357]
gi|83770605|dbj|BAE60738.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220698248|gb|EED54588.1| regulator of nonsense transcripts, putative [Aspergillus flavus
NRRL3357]
gi|391869636|gb|EIT78831.1| RNA helicase nonsense mRNA reducing factor [Aspergillus oryzae
3.042]
Length = 1072
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 145/442 (32%), Positives = 216/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 432 QRPLSLIQGPPGTGKTVTSATIIYHLAKLNGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 491
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L LK + L A + +L
Sbjct: 492 VTAKSR-----------EDVESPVGFLSLHEQVRLNDSNIEL---LKLNQLKAELGELSS 537
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 538 QDEKRLKQLTRSAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIP 597
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 598 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 655
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + + L D F P I+ P++ +LG EE
Sbjct: 656 LSEFPSNMFYEGSLQNGISSIERLRRDVDFPWP--ISDNPMMFWS--------NLGNEE- 704
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P I + +PY Q ++ + +A G
Sbjct: 705 ISASGT-SYLNRTEATNVEKIVTRFFKAGVQPGDIGIITPYEGQRSYIVSSM----QATG 759
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +A
Sbjct: 760 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLA 819
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 820 ILGNPKVLSKHPLWNCLLQHFK 841
>gi|410074371|ref|XP_003954768.1| hypothetical protein KAFR_0A01950 [Kazachstania africana CBS 2517]
gi|372461350|emb|CCF55633.1| hypothetical protein KAFR_0A01950 [Kazachstania africana CBS 2517]
Length = 995
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 155/462 (33%), Positives = 227/462 (49%), Gaps = 69/462 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+DSQ A+ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 421 LNDSQSNAVKKVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 478
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V+S +L +V + +L+K L+
Sbjct: 479 HLAAKLRDLGLKVVRLTAKSREDVESSVSSLALHNLVARS----------SQGELKKLLK 528
Query: 352 QCLKDD--SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
+KD+ L+A K+ K ++K E E +L+ A VV T GA D +RLD
Sbjct: 529 --MKDEIGELSAAD---TKRFVKLVRKAESE----ILAKADVVCCTCVGAGD---KRLDA 576
Query: 410 -FDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERA 448
F V K+ IL GD QL PVIL RKA + G+ SL ER
Sbjct: 577 KFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLRQSLFERL 636
Query: 449 ATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC 508
+L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I
Sbjct: 637 ISL--GHVPIRLEVQYRMNPNLSEFPSNMFYEGSLQNGVTIEQRTVSNSTFPWP--IHGV 692
Query: 509 PLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQS 568
P++ YG E + GT S+ N EA + L GV P I V +
Sbjct: 693 PMMFWAN---YG------REEISANGT-SYLNRIEAMNCERIITRLFKDGVKPEQIGVIT 742
Query: 569 PYVAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
PY Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL
Sbjct: 743 PYEGQRAYILQYMQMNGVLDKNLYVKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLR 802
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
D RR+NV +TRA + ++ + ++ N LL H R G
Sbjct: 803 DPRRLNVGLTRAKYGLIILGNPRSLSRNLLWNHLLIHFREKG 844
>gi|224126379|ref|XP_002329539.1| predicted protein [Populus trichocarpa]
gi|222870248|gb|EEF07379.1| predicted protein [Populus trichocarpa]
Length = 1242
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 213/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 497 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 556
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 557 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 599
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+ SA V+ T GA DP RL F
Sbjct: 600 -GELSSSDEKKYKALKRATEREISQSADVICCTCGGAGDP---RLSNFRFRQVLIDESTQ 655
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ + GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 656 ATEPECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GVKPIRL 713
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ ++ + S Y G+L + TV F P + P+
Sbjct: 714 QVQYRMHPCLSEFPSNNFYEGTLQNGVTVNERQSSGIDFPWP--VPNRPMFFY------- 764
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 765 -VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNY 821
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 822 MSRNGALRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 876
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 877 ALTRARYGIVILGNPKVLSKQPLWNSLLTHYK 908
>gi|359474491|ref|XP_002279304.2| PREDICTED: regulator of nonsense transcripts 1 homolog [Vitis
vinifera]
gi|297742168|emb|CBI33955.3| unnamed protein product [Vitis vinifera]
Length = 1267
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 215/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 487 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 546
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 547 LCAKSR-----------EAVSSPVEHLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 589
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+ SA V+ T GA DP RL F
Sbjct: 590 -GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP---RLANFRFRQVLIDESTQ 645
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 646 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GVKPIRL 703
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ +++ + S Y G+L + T+ F P + P+
Sbjct: 704 QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWP--VPNRPMFFY------- 754
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 755 -VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNY 811
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 812 MSRNGALRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 866
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 867 ALTRARYGIVILGNPKVLSKQPLWNSLLTHYK 898
>gi|157130590|ref|XP_001661931.1| nonsense-mediated mrna decay protein 1 (rent1) [Aedes aegypti]
gi|108871854|gb|EAT36079.1| AAEL011817-PA [Aedes aegypti]
Length = 1121
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 218/454 (48%), Gaps = 64/454 (14%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT I+ + V+ G VLV AP+N AVD +
Sbjct: 466 SQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVRLNGGPVLVCAPSNTAVDQLT 523
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCL 354
EK+ L +VRV +R E ++S ++ + + + DL+ Q L
Sbjct: 524 EKIHRTSLKVVRVCAKSR-----------EAIESPVSFLALHNQIRNMEQNSDLKKLQQL 572
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
KD++ +L K + +K+ +E+L +A V+ T GA DP ++R+ ++
Sbjct: 573 KDET-----GELSSSDEKRYRSLKKQAERELLEAADVICCTCVGAGDPRLQRIKFSSILI 627
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
K+ IL GD CQL PV++ +KA + G+ SL ER L G+
Sbjct: 628 DESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GI 685
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ + S Y GSL + L VD P+ P P+ L
Sbjct: 686 RPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEERKLKVDFPWPSP----DTPMFFLV 741
Query: 515 TRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
T+ G EE +AG+G S+ N EA V + AGV P I + +PY Q
Sbjct: 742 TQ--------GQEE---IAGSGTSYLNRTEASNVEKITTRFLKAGVKPDQIGIITPYEGQ 790
Query: 574 VQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
+L + + +E+A++D+FQGRE D +I+S VRSN +GFL D RR+
Sbjct: 791 RAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRL 850
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
NVA+TRA + +V + + LL +
Sbjct: 851 NVALTRAKYGIIIVGNPKVLSKQQLWNHLLNFYK 884
>gi|50286349|ref|XP_445603.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524908|emb|CAG58514.1| unnamed protein product [Candida glabrata]
Length = 964
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 223/457 (48%), Gaps = 65/457 (14%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ KA+ L +RPL +IQGPPGTGKT I+ + + +R+LV AP+N AVD++
Sbjct: 411 SQSKAVEHVL--QRPLSLIQGPPGTGKTVTSASIVYHLSKIRKDRILVCAPSNIAVDHLA 468
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
KL D+GL +VRV +R + +V+S +L +V +K A V + K + +L
Sbjct: 469 AKLRDLGLKVVRVTAKSREDVESSVSSLALHNLV-AKGAKGVLKKLLKLKEEAGELS--- 524
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-TFDLV 413
A ++ + + K+T K +L A VV T GA D RRLD F V
Sbjct: 525 -----ARDTKRFISLV--------KKTEKSILEQADVVCCTCVGAGD---RRLDMKFRTV 568
Query: 414 --------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
K+ IL GD QL PVIL RKA + G+ SL ER +L
Sbjct: 569 LIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKASDAGLKQSLFERLISL-- 626
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
G + +L QYRMN ++ + S Y GSL + T L ++ F P I P++
Sbjct: 627 GHIPIRLEVQYRMNPFLSEFPSNMFYEGSLQNGVTEEQRTLANSTFPWP--INGIPMMFW 684
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
YGS E + GT S+ N EA + L GV P I V +PY Q
Sbjct: 685 AN---YGS------EEMSANGT-SYLNRTEAMNCERIITRLFRDGVKPEQIGVITPYEGQ 734
Query: 574 VQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
++ + + D + VEVA++D+FQGRE D +I+S VR+N +GFL D RR+
Sbjct: 735 RAYVLQYMQMNGALDKELYSNVEVASVDAFQGREKDFIILSCVRANEQQMIGFLRDPRRL 794
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NV +TRA + ++ + ++ NT LL H R G
Sbjct: 795 NVGLTRAKYGLIILGNPRSLSRNTLWNHLLLHFRQKG 831
>gi|325184899|emb|CCA19391.1| RNA helicase putative [Albugo laibachii Nc14]
Length = 1058
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 149/449 (33%), Positives = 218/449 (48%), Gaps = 75/449 (16%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
+PL +IQGPPGTGKT I+ +Q +VLVTAP+N AVD++ K+S +GL +VR+
Sbjct: 463 QPLSLIQGPPGTGKTVTSASIVYHMSRQNMGQVLVTAPSNIAVDHLTAKISAIGLKVVRL 522
Query: 310 GNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
+R +S +V SL +VK + K++LRK ++ LK+D +L
Sbjct: 523 AAKSREAVSCSVEHLSLHTMVKLLTSP-------DKAELRKLMQ--LKNDQ-----GELS 568
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------- 413
Q K K +++ +E+L +A V+ T GA DP RL F
Sbjct: 569 SQDEKKFKSLKRQAEREILQAADVICTTCVGAGDP---RLSNFRFRQVLIDEATQATEPE 625
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K ++ GD CQL PV+++++A G+ SL +R L +L QYR
Sbjct: 626 CLIPIVQGAKHVVMVGDHCQLGPVVMNKRAASAGLNQSLFDRLLKLDHRPF--RLRVQYR 683
Query: 466 MNDAIASWASKEMYGGSLIS--SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
M+ ++ + S Y G L + SST VD P+ P T + +
Sbjct: 684 MHPCLSEFPSNTFYEGELQNGVSSTERQLKNVDFPWPNPNKPT------------FFYIC 731
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH------- 576
LG EE + +GT S+ N EA V V + + GV P+ I V +PY Q +
Sbjct: 732 LGAEE-ISSSGT-SYLNRTEASNVEKIVTAFLKCGVLPAQIGVITPYEGQRAYVVNYMQR 789
Query: 577 ---LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAIT 633
+R +L VEVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA+T
Sbjct: 790 NGSMRAQL-----YKDVEVASVDSFQGREKDLIILSCVRSNENQGIGFLSDRRRLNVALT 844
Query: 634 RACKHVAVVCDSSTICHNTFLARLLRHIR 662
RA V ++ + + RLL H R
Sbjct: 845 RAKYGVIILGNPRVLAKQELWNRLLNHYR 873
>gi|303320095|ref|XP_003070047.1| nonsense transcript regulator, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109733|gb|EER27902.1| nonsense transcript regulator, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320031876|gb|EFW13833.1| ATP-dependent helicase NAM7 [Coccidioides posadasii str. Silveira]
gi|392865836|gb|EAS31677.2| ATP-dependent helicase NAM7 [Coccidioides immitis RS]
Length = 1101
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 217/456 (47%), Gaps = 61/456 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT +I + G +VLV AP+N AVD
Sbjct: 449 LNPSQINAVKAVLQK--PLSLIQGPPGTGKTVTSATVIYHLAKISGGQVLVCAPSNVAVD 506
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E + GL VRV +R E V+S + + + +D +L
Sbjct: 507 QLCECIHRTGLKTVRVTAKSR-----------EDVESPVRHLSLHEQVRNNDSNVEL--- 552
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL- 412
+K L + +L Q K K+ + KE+LS+A V+ T GA DP RL F
Sbjct: 553 MKLTQLKNDMGELSSQDEKKFKQLTRAAEKEILSNADVICCTCVGAGDP---RLAKFKFR 609
Query: 413 --------------------VG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
+G K+ +L GD QL PVI+++KA + G+ SL ER L
Sbjct: 610 TVLIDESTQSSEPECMIPLVMGCKQVVLVGDHLQLGPVIMNKKAAKAGLNQSLFERLVIL 669
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G +L QYRM+ ++++ S Y GSL + T LL D F P + P++
Sbjct: 670 --GCAPIRLNVQYRMHPCLSAFPSNMFYEGSLQNGVTSDDRLLKDVDFPWP--VADKPMM 725
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+LG EE + +GT S+ N EA V V AGV PSAI + +PY
Sbjct: 726 FWS--------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSAIGIITPYE 775
Query: 572 AQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
Q ++ + +EVA++D+FQGRE D +++S VRSN +GFL D R
Sbjct: 776 GQRSYVVSSMQLNGTYKKEAYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPR 835
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
R+NVA+TRA + ++ + + + LLRH +
Sbjct: 836 RLNVALTRAKYGLVILGNPKVLSKHPLWNYLLRHFK 871
>gi|320592037|gb|EFX04476.1| regulator of nonsense [Grosmannia clavigera kw1407]
Length = 1095
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 146/439 (33%), Positives = 220/439 (50%), Gaps = 59/439 (13%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT II A +VLV AP+N AVD + E++ GL +VR+
Sbjct: 469 PLSLIQGPPGTGKTVTSATIIYHLAKMNNSQVLVCAPSNVAVDQLCERVHRTGLKVVRLT 528
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLR--QCLKDDSLAAGIRQLL 367
+R E V+S + SF+A E+ + +D +L Q LK++ + +L
Sbjct: 529 AKSR-----------EDVESSV-SFLALHEQVRMNDTNVELTRLQLLKNE-----VGELS 571
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------- 413
K K+ K KE+L++A VV T GA DP + ++ +++
Sbjct: 572 SLDEKKFKQLTKAAEKEILNNADVVCCTCVGAGDPRLAKMKFRNVLIDESTQSAEPECMI 631
Query: 414 -----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 632 PLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKL--GFAPIRLNVQYRMHP 689
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
+A++ S Y GSL + T+ L D F P ++DT + + S +LG EE
Sbjct: 690 HLAAFPSNMFYEGSLQNGVTIQERLRKDVDF---------PWPVVDTPMMFWS-NLGNEE 739
Query: 529 HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL---- 584
+ +GT S+ N EA V V AGV P+ I V +PY Q ++ + +
Sbjct: 740 -ISASGT-SYLNRTEASNVEKVVTRFFKAGVKPADIGVITPYEGQRSYIVTTMQNTGTFK 797
Query: 585 -PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVC 643
VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++
Sbjct: 798 KESYKEVEVASVDAFQGREKDYIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGIVILG 857
Query: 644 DSSTICHNTFLARLLRHIR 662
+ + + LL H +
Sbjct: 858 NPKVLAKHELWYHLLVHFK 876
>gi|425767683|gb|EKV06249.1| Regulator of nonsense transcript, putative [Penicillium digitatum
PHI26]
gi|425780378|gb|EKV18385.1| Regulator of nonsense transcript, putative [Penicillium digitatum
Pd1]
Length = 1079
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 144/444 (32%), Positives = 218/444 (49%), Gaps = 65/444 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 437 QRPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 496
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
V +R + AV SL E V+ ++ + +K + L A + +L
Sbjct: 497 VTAKSREDVESAVGFLSLHEQVRMNDSNI----------------ELVKLNQLKAELGEL 540
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR-------------------L 407
Q K LK+ + +E+L++A V+ T GA DP + + +
Sbjct: 541 SSQDEKRLKQLTRSAEREILTNADVICCTCVGAGDPRLSKGKFRTVLIDESTQSAEPECM 600
Query: 408 DTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 601 IPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMH 658
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
++ + S Y GSL + T+A + D F P ++D + + S +LG E
Sbjct: 659 PCLSEFPSNMFYEGSLQNGITIADRVRRDVDF---------PWPIIDDPMMFWS-NLGNE 708
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
E + +GT S+ N EA V V AGV P I + +PY Q ++ + +A
Sbjct: 709 E-ISASGT-SYLNRTEATNVEKIVTRFFKAGVQPRDIGIITPYEGQRSYIVSSM----QA 762
Query: 588 AG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
G +EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA
Sbjct: 763 TGTFKKEHYKEIEVASVDAFQGREKDYIILSCVRSNDHQGIGFLSDPRRLNVALTRARFG 822
Query: 639 VAVVCDSSTICHNTFLARLLRHIR 662
+ ++ + + + LL+H +
Sbjct: 823 LVILGNPKVLSKHPLWNCLLQHFK 846
>gi|340914927|gb|EGS18268.1| eliminates the production of nonsense-containing-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 1098
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 220/453 (48%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ AI L+ PL +IQGPPGTGKT II + +VLV AP+N AVD
Sbjct: 457 LNHSQITAIKTVLST--PLSLIQGPPGTGKTVTSATIIYHLCKMNNSQVLVCAPSNVAVD 514
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL +VR+ +R E V+S + + + DLR+
Sbjct: 515 QLCERIHRTGLKVVRLTAKSR-----------EDVESSVKFLALHEQVRMHTGNPDLRKL 563
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
+ L A + +L Q K LK+ ++ +E+L++A VV T GA DP + ++ +++
Sbjct: 564 AQ---LKAEVGELSSQDEKKLKQLTRQAEREILANADVVCCTCVGAGDPRLAKMKFRNVL 620
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
K+ +L GD QL PVI+++KA + G+ SL ER L+
Sbjct: 621 IDESTQSAEPECMIPLVLGCKQAVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLN-- 678
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+ +L QYRM+ ++ + S Y GSL + T A + D F P + P++
Sbjct: 679 LTPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVTHAERIRKDVDFPWP--VADMPMMFWS 736
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS I V +PY Q
Sbjct: 737 --------NLGSEE-ISASGT-SYLNRTEAANVEKVVTRFFKAGVKPSDIGVITPYEGQR 786
Query: 575 QHLRERLDDL-----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + + VEVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 787 SYIVSTMQNTGTFKKEWYKEVEVASVDAFQGREKDYIVLSCVRSNDNQGIGFLSDPRRLN 846
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LL H +
Sbjct: 847 VALTRAKYGLVIIGNPKVLAKHELWHHLLVHFK 879
>gi|255937245|ref|XP_002559649.1| Pc13g12330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584269|emb|CAP92302.1| Pc13g12330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1079
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 144/444 (32%), Positives = 218/444 (49%), Gaps = 65/444 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 437 QRPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 496
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
V +R + AV SL E V+ ++ + +K + L A + +L
Sbjct: 497 VTAKSREDVESAVGFLSLHEQVRMNDSNI----------------ELVKLNQLKAELGEL 540
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR-------------------L 407
Q K LK+ + +E+L++A V+ T GA DP + + +
Sbjct: 541 SSQDEKRLKQLTRSAEREILTNADVICCTCVGAGDPRLSKGKFRTVLIDESTQSAEPECM 600
Query: 408 DTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 601 IPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMH 658
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
++ + S Y GSL + T+A + D F P ++D + + S +LG E
Sbjct: 659 PCLSEFPSNMFYEGSLQNGITIADRVRRDVDF---------PWPIIDDPMMFWS-NLGNE 708
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
E + +GT S+ N EA V V AGV P I + +PY Q ++ + +A
Sbjct: 709 E-ISASGT-SYLNRTEATNVEKIVTRFFKAGVQPKDIGIITPYEGQRSYIVSSM----QA 762
Query: 588 AG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
G +EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA
Sbjct: 763 NGTFKKEHYKEIEVASVDAFQGREKDYIILSCVRSNDHQGIGFLSDPRRLNVALTRARFG 822
Query: 639 VAVVCDSSTICHNTFLARLLRHIR 662
+ ++ + + + LL+H +
Sbjct: 823 LVILGNPKVLSKHPLWNCLLQHFK 846
>gi|119183909|ref|XP_001242931.1| hypothetical protein CIMG_06827 [Coccidioides immitis RS]
Length = 1089
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 145/453 (32%), Positives = 216/453 (47%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT +I + G +VLV AP+N AVD
Sbjct: 437 LNPSQINAVKAVLQK--PLSLIQGPPGTGKTVTSATVIYHLAKISGGQVLVCAPSNVAVD 494
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E + GL VRV +R E V+S + + + +D +L
Sbjct: 495 QLCECIHRTGLKTVRVTAKSR-----------EDVESPVRHLSLHEQVRNNDSNVEL--- 540
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
+K L + +L Q K K+ + KE+LS+A V+ T GA DP + + ++
Sbjct: 541 MKLTQLKNDMGELSSQDEKKFKQLTRAAEKEILSNADVICCTCVGAGDPRLAKFKFRTVL 600
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 601 IDESTQSSEPECMIPLVMGCKQVVLVGDHLQLGPVIMNKKAAKAGLNQSLFERLVIL--G 658
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++++ S Y GSL + T LL D F P + P++
Sbjct: 659 CAPIRLNVQYRMHPCLSAFPSNMFYEGSLQNGVTSDDRLLKDVDFPWP--VADKPMMFWS 716
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PSAI + +PY Q
Sbjct: 717 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSAIGIITPYEGQR 766
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + +EVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 767 SYVVSSMQLNGTYKKEAYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLN 826
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LLRH +
Sbjct: 827 VALTRAKYGLVILGNPKVLSKHPLWNYLLRHFK 859
>gi|402085799|gb|EJT80697.1| regulator-nonsense transcripts 1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1097
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 214/437 (48%), Gaps = 55/437 (12%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT II A +VLV AP+N AVD + E++ GL +VR+
Sbjct: 468 PLSLIQGPPGTGKTVTSATIIYHLAKMNNSQVLVCAPSNVAVDQLCERVHRTGLKVVRLT 527
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+R E V+S + SF+A E+ + +D +L K L + + +L Q
Sbjct: 528 AKSR-----------EDVESSV-SFLALHEQVRMNDTNPEL---AKLQQLKSELGELSSQ 572
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
K K+ K +E+L +A VV T GA DP + ++ +++
Sbjct: 573 DEKKFKQLTKAAEREILGNADVVCCTCVGAGDPRLAKMKFRNVLIDESTQSAEPECMIPL 632
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
K+ +L GD QL PVI+++KA + G+ SL ER L+ + +L QYRM+ +
Sbjct: 633 VLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLN--LTPIRLNVQYRMHPCL 690
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ + S Y GSL + T+ L D F P + P++ +LG EE +
Sbjct: 691 SEFPSNMFYEGSLQNGVTIQQRLRRDVDFPWP--VGDMPMMFWS--------NLGNEE-I 739
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-----P 585
+GT S+ N EA V V AGV P I V +PY Q ++ + +
Sbjct: 740 SASGT-SYLNRTEASNVEKIVTRFFKAGVKPGDIGVITPYEGQRSYIVSTMQNTGTFKKE 798
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA V ++ +
Sbjct: 799 SYKEVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGVVIIGNP 858
Query: 646 STICHNTFLARLLRHIR 662
+ + LL H R
Sbjct: 859 KVLSKHELWHHLLVHFR 875
>gi|336263126|ref|XP_003346344.1| hypothetical protein SMAC_07821 [Sordaria macrospora k-hell]
gi|380091672|emb|CCC10804.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1093
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 141/437 (32%), Positives = 215/437 (49%), Gaps = 55/437 (12%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT II A +VLV AP+N AVD + E++ GL +VR+
Sbjct: 471 PLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLCERIHRTGLKVVRLT 530
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+R E V+S + SF+A E+ + + K+L +K L +L Q
Sbjct: 531 AKSR-----------EDVESSV-SFLALHEQVRMNTTNKELDGLVK---LKTETGELSSQ 575
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
K K+ ++ +E+L +A VV T GA DP + ++ +++
Sbjct: 576 DEKRFKQLTRQAEREILQNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPL 635
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
K+ +L GD QL PVI+++KA + G+ SL ER L +L QYRM+ +
Sbjct: 636 VLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLQ--FTPIRLKVQYRMHPCL 693
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ + S Y GSL + T A L D F P + + P++ +LG EE +
Sbjct: 694 SEFPSNMFYDGSLQNGVTAAERLRKDVDFPWP--VPETPMMFWS--------NLGNEE-I 742
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-----P 585
+GT S+ N EA V V AGV P+ I V +PY Q ++ + +
Sbjct: 743 SASGT-SYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKE 801
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
VEVA++D+FQGRE + +++S VRSN +GFL D RR+NVA+TRA + ++ +
Sbjct: 802 SYREVEVASVDAFQGREKEFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNP 861
Query: 646 STICHNTFLARLLRHIR 662
+C + LL H +
Sbjct: 862 KVLCKHELWHHLLVHFK 878
>gi|313227208|emb|CBY22355.1| unnamed protein product [Oikopleura dioica]
Length = 542
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 189/585 (32%), Positives = 275/585 (47%), Gaps = 112/585 (19%)
Query: 100 LPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFG 159
LP T +S G V + + DSR +GFV + E TI V ++ G+ G
Sbjct: 13 LPATEISHGKPVVITMPDSR-------YRGFVFSTSE--ATIDVCVDV--GENGEKIALG 61
Query: 160 KSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLE-END 218
R+D I D +TY R A ++K + R S V +FG+ + + E+
Sbjct: 62 D--RLD-IMPAPDDITYRRMKAASEEMKKM-IETR--SSRTVDIIFGESQPYPQVSTESF 115
Query: 219 LADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ 278
LA ++VK + Q +A+ L + L+ + GPPGTGK+ + I+A A Q+
Sbjct: 116 LAPKTDVK-------NLNKEQLEAVRASLAIQD-LMCLHGPPGTGKSTTVAAIVAEAAQR 167
Query: 279 GERVLVTAPTNAAVDNMVEKLSDVGLNIV-RVGNPARISPAVASKSLGEIVKSKLASFVA 337
G + +VT P+NAAVD +VEKL+ +V R+G+PAR SP + +L
Sbjct: 168 GIKTIVTCPSNAAVDALVEKLAKRREVVVTRLGHPARTSPHLRQYTL------------- 214
Query: 338 EFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
E K +D+ ++ + LK D AA R+ +L K L+ +EK+ E+L+++ V+AT T
Sbjct: 215 --EAKMADV--EMLRGLKSDMYAASGRER-GELRKELRDREKKCSTEILANSHAVVATCT 269
Query: 398 GA---------ADPLIRRLDTFDLVG-----------KRC----ILAGDQCQLAPVILSR 433
+DP L D G +RC ILAGD QL P ++S+
Sbjct: 270 VVGMKSILDVISDPEHFGLAIVDEAGQAVEPAIYPILRRCSKKLILAGDPAQLPPTVMSK 329
Query: 434 KALEGGIGVSLLERAATLHEGVLA------TKLTTQYRMNDAIASWASKEMYGGSLISSS 487
G S+L + TL E ++ L QYRMN I+ W S MY G LI+
Sbjct: 330 -------GASILTK--TLLEDLMGRFPSNTVLLKRQYRMNKMISDWVSDSMYRGELIADE 380
Query: 488 TVASHLLVD-------------TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
+V +H L D FVK I P+ L+DT +G D
Sbjct: 381 SVQNHTLGDLLQDVEGVAKLAGADFVKD--ILSSPMTLIDT--------VGSNMDEDQVS 430
Query: 535 TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVAT 594
GEA + LI AG+ P IA+ SPY AQVQ + + + V V T
Sbjct: 431 EDQSKVLGEAILAALTTKILIKAGIKPKNIAIISPYAAQVQLIAKLV-----GPAVSVRT 485
Query: 595 IDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+D +QG EA+ VI+S+VRSN G GFL D RR+NVA++RA K +
Sbjct: 486 VDGYQGGEAEVVILSLVRSNIDGTTGFLSDRRRLNVAVSRARKKL 530
>gi|328853328|gb|EGG02467.1| hypothetical protein MELLADRAFT_38533 [Melampsora larici-populina
98AG31]
Length = 701
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 208/753 (27%), Positives = 334/753 (44%), Gaps = 153/753 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
LD++ + LLR+ERD+E + E + + + +K +E + +I
Sbjct: 7 LDKWLKAQLRLLRLERDSE----KVEFDLLTSDKVKQGQTKLLE----------RMGISI 52
Query: 73 CNLFVVSTSTGLGGMHLV-LFRVEGNH---RLPPTTLSPGDMVCVRVCDSRGACAT---- 124
L V STS GLGG + L R H ++P T PG + D A
Sbjct: 53 GGLGVKSTSIGLGGKTTIELERPAQYHTDPKIPYHTFRPGLPAGIIDHDLSSGKAKGVNT 112
Query: 125 --------SCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTY 176
+ I+G V + + T+ ++ P RI LADT T+
Sbjct: 113 KTSKLDKITIIEGVVSKVSDTSITLFLSSNQDSNPPELPARC-------RIIKLADTGTF 165
Query: 177 ER----------NCEALMLLQKN-GLHKRNPSIAAVVTLFGDK--EDVTWLEENDLADWS 223
+R +CEA +++ + HK DK ED +++ +
Sbjct: 166 DRLESTIETLRISCEAEGIIEPSEDTHK-------------DKAPEDT---QKDKTESTN 209
Query: 224 EVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVL 283
+ + +G +DSQ++A+ L+ P+ ++ GPPGTGKT L II+ +G+R+L
Sbjct: 210 QATPENALG--LNDSQQRAVRHALSPA-PITLVFGPPGTGKTHTLVSIISALHARGDRIL 266
Query: 284 VTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLAS 334
+ A +N A+DN+ E+L L + R+G+PAR+ +++ +L EI++
Sbjct: 267 IAAASNLAIDNIAERLLAKQLPLTRLGHPARVLDSLSQSTLDHQCNTFDGSEIIRDLKVE 326
Query: 335 FVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLA 394
+ + + + LR + + + +K L K +++E++ ++ A++V A
Sbjct: 327 INGKLNKLSAQGKDKLRGKAR-----STVYMDIKDLRKDYRQRERKHTDGIIKQARIVCA 381
Query: 395 TNTGAADPLIRRLDT--FDLV--------------------GKRCILAGDQCQLAPVI-L 431
T GA R+L+ FD+V + ILAGD QL P I L
Sbjct: 382 TTHGAGS---RQLENQVFDVVIIDESTQAYEAACWIPILKSKSKVILAGDPLQLPPTINL 438
Query: 432 SRKA-----LEGGIGVSLLERAA---------------TLHEGVLATK------LTTQYR 465
S + LE + E+ T+ + +L + L QYR
Sbjct: 439 SERVGALTDLETTGKPTTKEKPTRRGFFMMKPPKSLEVTMFDRLLKSNTSISCLLDVQYR 498
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC--PLLLLDTRLPYGSLS 523
M+ I + SK++Y G L ++ +VA HLL D P V + P+L +DT
Sbjct: 499 MHSMIMEFPSKQLYKGKLKAAESVAGHLLKDLPNVSESDNDGIADPVLFIDT-------- 550
Query: 524 LGCEEHLDLA---GTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV-QHLRE 579
G H +A G GS NE EA +VV V + AG+ P I V SPY AQV
Sbjct: 551 AGSHMHDRIAEEGGDGSVMNENEANLVVKQVTDFLEAGLLPEQIMVLSPYSAQVALLSSL 610
Query: 580 RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
P A + +IDS QGRE +AVI+S+VRSNT G VGFL ++RR+NVA+TRA + +
Sbjct: 611 LKSLYPTLA---IGSIDSCQGRENEAVILSLVRSNTEGVVGFLHETRRLNVAMTRAKRSL 667
Query: 640 AVVCDSSTICH-NTFLARLLRHIRYFGRVKHAE 671
++ DS T+ FL + + + V+ A+
Sbjct: 668 TIIGDSDTLSKGGDFLKKWMDWLENNAEVRVAD 700
>gi|326800123|ref|YP_004317942.1| ATPase AAA [Sphingobacterium sp. 21]
gi|326550887|gb|ADZ79272.1| AAA ATPase [Sphingobacterium sp. 21]
Length = 630
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 147/443 (33%), Positives = 228/443 (51%), Gaps = 59/443 (13%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPA 313
II GPPGTGKT + E +++ ++LV AP+N AVD + ++L +N+ R+G+P+
Sbjct: 194 IIHGPPGTGKTTTIIEACKVLLKERNCQLLVVAPSNTAVDLLTDQLLKAQINVTRIGSPS 253
Query: 314 RISPAVASKSLGE-IVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQ--LLKQL 370
R++P + +L E I ++ V + ++ + R+ R+ ++ I++ L +
Sbjct: 254 RVTPELLHATLDEQISQTSSIKEVKKIRKRANQFREMARRYKRNFGKEERIQRQTLFAEA 313
Query: 371 GKTLKKK---EKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------- 413
K +K+ E+ + V+ +AQV+ AT GA I+ + F+ V
Sbjct: 314 AKLIKEADALEQYATESVIKNAQVITATLVGAGHYSIKNI-CFEAVIIDEAAQALEPACW 372
Query: 414 -----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH--EGVLATKLTTQYRM 466
K+ ILAGD QL P I S A G+ +LLE+ L+ GV+ L QYRM
Sbjct: 373 IPILKAKKLILAGDHQQLPPTIKSVSAANQGLKETLLEKCIHLYPQSGVM---LQEQYRM 429
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
+ +I S++S++ Y SLI+ ++VA+ LL + PL +DT + G
Sbjct: 430 HTSIMSFSSQKFYQSSLIAHNSVANTLL---------FPNDQPLQFIDT------VGCGF 474
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSL---ICAGVSPSA---IAVQSPYVAQVQHLRER 580
+E D GS YN EA V+H++ L + SP IA+ SPY +QV +
Sbjct: 475 DERDD---EGSIYNLEEASFVLHYLSMLSTSLSQHYSPENYPRIAIISPYASQVDKFKAL 531
Query: 581 LDDLPEAA---GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
L+ P + V + TID FQG+E D VIIS+ RSN +GFL D RRMNVA+TRA K
Sbjct: 532 LEADPLSIYKDKVTINTIDGFQGQERDIVIISLTRSNQERKIGFLSDIRRMNVAMTRAKK 591
Query: 638 HVAVVCDSSTICHNTFLARLLRH 660
+ +V DS T+ F A L+ +
Sbjct: 592 KLVMVGDSLTLSKLPFYADLITY 614
>gi|421099790|ref|ZP_15560434.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200901122]
gi|410797214|gb|EKR99329.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200901122]
Length = 637
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 229/463 (49%), Gaps = 61/463 (13%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
M + + SQK A+ L + +I GPPGTGKT L EI+++ V +G++VLV+APT++
Sbjct: 185 MDSSLNPSQKNAV-LRCVFSEDIAVIHGPPGTGKTTTLTEIVSQLVVEGKKVLVSAPTHS 243
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLRKD 349
A D +VE +S G++++R+G+PARIS AV + +L ++ + E+ + ++ K
Sbjct: 244 ACDLLVESISAKGISVLRLGHPARISEAVLNSTLDYKLFHHSDGKLLNEYRKDVIEISKQ 303
Query: 350 LRQCL-----KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI 404
++ K+ + Q +K+L K ++ EK + ++SS V+++T +A ++
Sbjct: 304 AKKYKRNFGEKEKKERKNLFQEVKELKKMIRSMEKGLIDSLVSSHPVIISTPVASARSVL 363
Query: 405 RRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
TFD L R ILAGD QL P + S K + +L
Sbjct: 364 EG-RTFDFCVLDESSQGLEPAFWIPILKSDRVILAGDHKQLPPSLFSEK---NSLEFTLF 419
Query: 446 ERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
E+AA L L TQYRM D I+ + S E Y L S +P
Sbjct: 420 EKAAERLETSGRVFLLDTQYRMKDEISFFPSMEFYSNRLKSGRP------------EPER 467
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHVFSLIC 556
+ P P+G+ + +D AGT S N EA++ V L
Sbjct: 468 TSNFP-----ETFPFGN----AFQWIDTAGTDSEEVAVDDSLTNPFEADLQVRLCILLQE 518
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
I + SPY AQV+ + E+L + + ++V+TIDSFQGRE ++ VRSN
Sbjct: 519 NDWPEEEITILSPYRAQVRLVLEKLQEAG-LSKIQVSTIDSFQGRENRCILFGFVRSNAE 577
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
G GFL +SRR+NV +TRA + + DSST+ + FL+RL+R
Sbjct: 578 GRSGFLKESRRINVGMTRAKDLLLCIGDSSTLLEDPFLSRLIR 620
>gi|68478193|ref|XP_716838.1| hypothetical protein CaO19.8554 [Candida albicans SC5314]
gi|68478314|ref|XP_716778.1| hypothetical protein CaO19.939 [Candida albicans SC5314]
gi|46438461|gb|EAK97791.1| hypothetical protein CaO19.939 [Candida albicans SC5314]
gi|46438523|gb|EAK97852.1| hypothetical protein CaO19.8554 [Candida albicans SC5314]
Length = 1019
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 149/461 (32%), Positives = 225/461 (48%), Gaps = 70/461 (15%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT II + +++LV AP+N AVD++
Sbjct: 444 SQTNAVRTVL--QRPLSLIQGPPGTGKTVTSATIIYHLSKLNKQKILVCAPSNVAVDHLA 501
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
KL +GLN+VR+ +R + +V+ +L +V S K +L+K ++
Sbjct: 502 AKLDLLGLNVVRLTAKSREDVESSVSHLALHNLVNSN----------AKGELKKLIK--- 548
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
L + +L K + + +VL+ A+VV T GAAD RRL F
Sbjct: 549 ----LKNQVGELSVADTNNYLKLSRSSEMKVLNKAEVVCCTCVGAAD---RRLSQFRFKT 601
Query: 414 ---------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
K+ IL GD QL PVIL +KA + G+ SL ER L
Sbjct: 602 VLIDESTQASEPEVLIPIVKGAKQVILVGDHQQLGPVILDKKAADAGLKQSLFERLVFL- 660
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
G + +L QYRM+ ++ + S Y GSL + T L+ ++ F P +
Sbjct: 661 -GHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVTSDDRLIEESTF---------PWPV 710
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+DT + + + + G EE L+ +G S+ N EA V + L G+ P I V +PY
Sbjct: 711 IDTPMMFWA-NYGREE---LSASGNSYLNRVEAMNVEKIITKLFKDGIKPEQIGVITPYE 766
Query: 572 AQVQHLRER-------LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
Q +L + LD + VE+ ++D+FQGRE D +I+S VR+N ++GFL D
Sbjct: 767 GQRAYLVQFMSVNSTLLDKRDQYLNVEITSVDAFQGREKDFIILSCVRANDSQSIGFLSD 826
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NVA+TRA + ++ + ++C N LL H R G
Sbjct: 827 PRRLNVALTRAKYGLVILGNPRSLCRNRLWNHLLIHFREKG 867
>gi|398337026|ref|ZP_10521731.1| DNA and RNA helicase subunit [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 634
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 235/462 (50%), Gaps = 55/462 (11%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + +DSQK A+ L + II GPPGTGKT L EI+++ V + ++LV+APT
Sbjct: 183 GRINASLNDSQKNAV-LHCVLSEDVSIIHGPPGTGKTTTLTEIVSQIVAEDRKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLR 347
++A D +VE +S+ G+ ++R+G+PARIS + +L ++ ++E+ R ++
Sbjct: 242 HSACDLLVESISEKGIPVLRLGHPARISESALHSTLDYKLFHHPDGKLLSEYRRDVVEIS 301
Query: 348 KDLRQCL-----KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
K ++ K+ + +K+L KT++ EK + ++SS V+++T +A
Sbjct: 302 KQAKKFKRNFGEKEREERKNLFAEVKELKKTIRSMEKGLIDSLISSHPVIVSTPVASARG 361
Query: 403 LIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVS 443
++ TFD L R ILAGD QL P + S K + ++
Sbjct: 362 ILEG-RTFDFCVLDESSQALEPASWIPILKSDRVILAGDHKQLPPTLFSEK---NSLELT 417
Query: 444 LLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI---SSSTVASHLLVDTPF 499
L E+AA L L TQYRM D IAS+ SKE Y L + AS + PF
Sbjct: 418 LFEKAAERLAVSGRVFLLDTQYRMKDEIASFPSKEFYSDLLKPGRPQNERASDFPENFPF 477
Query: 500 VKP-TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG 558
K WI G + +++ S N EA++ + + SL+
Sbjct: 478 SKSFQWIDTA----------------GTDSE-EISVDDSLTNPYEADLQI-QLCSLLREN 519
Query: 559 VSPS-AIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
P I + SPY AQV+ + E+L + + V ++TIDSFQGRE +++ VRSN+ G
Sbjct: 520 DWPQEEITILSPYRAQVRLISEKLKEAG-FSKVGISTIDSFQGRENRCILLGFVRSNSEG 578
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
GFL +SRR+NV ITRA + + DSST+ + FL++L+R
Sbjct: 579 RSGFLKESRRINVGITRARDLLLCIGDSSTLSEDPFLSKLIR 620
>gi|238882462|gb|EEQ46100.1| ATP-dependent helicase NAM7 [Candida albicans WO-1]
Length = 1019
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 149/461 (32%), Positives = 225/461 (48%), Gaps = 70/461 (15%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT II + +++LV AP+N AVD++
Sbjct: 444 SQTNAVRTVL--QRPLSLIQGPPGTGKTVTSATIIYHLSKLNKQKILVCAPSNVAVDHLA 501
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
KL +GLN+VR+ +R + +V+ +L +V S K +L+K ++
Sbjct: 502 AKLDLLGLNVVRLTAKSREDVESSVSHLALHNLVNSN----------AKGELKKLIK--- 548
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
L + +L K + + +VL+ A+VV T GAAD RRL F
Sbjct: 549 ----LKNQVGELSVADTNNYLKLSRSSEMKVLNKAEVVCCTCVGAAD---RRLSQFRFKT 601
Query: 414 ---------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
K+ IL GD QL PVIL +KA + G+ SL ER L
Sbjct: 602 VLIDESTQASEPEVLIPIVKGAKQVILVGDHQQLGPVILDKKAADAGLKQSLFERLVFL- 660
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
G + +L QYRM+ ++ + S Y GSL + T L+ ++ F P +
Sbjct: 661 -GHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVTSDDRLIEESTF---------PWPV 710
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+DT + + + + G EE L+ +G S+ N EA V + L G+ P I V +PY
Sbjct: 711 IDTPMMFWA-NYGREE---LSASGNSYLNRVEAMNVEKIITKLFKDGIKPEQIGVITPYE 766
Query: 572 AQVQHLRER-------LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
Q +L + LD + VE+ ++D+FQGRE D +I+S VR+N ++GFL D
Sbjct: 767 GQRAYLVQFMSVNSTLLDKRDQYLNVEITSVDAFQGREKDFIILSCVRANDSQSIGFLSD 826
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NVA+TRA + ++ + ++C N LL H R G
Sbjct: 827 PRRLNVALTRAKYGLVILGNPRSLCRNRLWNHLLIHFREKG 867
>gi|170053152|ref|XP_001862543.1| nonsense-mediated mRNA decay protein 1 [Culex quinquefasciatus]
gi|167873798|gb|EDS37181.1| nonsense-mediated mRNA decay protein 1 [Culex quinquefasciatus]
Length = 1136
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 152/483 (31%), Positives = 231/483 (47%), Gaps = 69/483 (14%)
Query: 209 EDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLL 268
+DVT+ N +S L + + SQ A+ L +RPL +IQGPPGTGKT
Sbjct: 454 DDVTFRINNLPKHFSAANLPDL-----NRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTS 506
Query: 269 KEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLG 325
I+ + V+ G +LV AP+N AVD + EK+ L +VRV +R I V+ +L
Sbjct: 507 ATIVYQLVRLNGGPILVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALH 566
Query: 326 EIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEV 385
+++ + SDL+K Q LKD++ +L K + +K+ +E+
Sbjct: 567 NQIRNM---------EQNSDLKK--LQQLKDET-----GELSSSDEKRYRMLKKQAEREL 610
Query: 386 LSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQL 426
L +A V+ T GA DP ++R+ ++ K+ IL GD CQL
Sbjct: 611 LEAADVICCTCVGAGDPRLQRIKFSSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQL 670
Query: 427 APVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISS 486
PV++ +KA + G+ SL ER L G+ +L QYRM+ ++ + S Y GSL +
Sbjct: 671 GPVVMCKKAAKAGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNG 728
Query: 487 STVASHLL-VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEA 544
L VD P+ P P+ L T+ G EE +AG+G S+ N EA
Sbjct: 729 VCAEERKLKVDFPWPSP----DTPMFFLVTQ--------GQEE---IAGSGTSYLNRTEA 773
Query: 545 EIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG-----VEVATIDSFQ 599
V + AGV P I + +PY Q +L + + +E+A++D+FQ
Sbjct: 774 SNVEKITTRFLKAGVKPEQIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQ 833
Query: 600 GREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
GRE D +I+S VRSN +GFL D RR+NVA+TRA + +V + + LL
Sbjct: 834 GREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGIIIVGNPKVLSKQQLWNHLLN 893
Query: 660 HIR 662
+
Sbjct: 894 FYK 896
>gi|145240145|ref|XP_001392719.1| regulator of nonsense transcripts 1 [Aspergillus niger CBS 513.88]
gi|134077233|emb|CAK45574.1| unnamed protein product [Aspergillus niger]
Length = 1072
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 215/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 432 QRPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 491
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L +K + L A + +L
Sbjct: 492 VTAKSR-----------EDVESPVGFLSLHEQVRINDTNIEL---IKLNQLKAELGELSS 537
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 538 QDEKRLKQLTRSAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIP 597
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 598 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 655
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + + L D F P I P++ +LG EE
Sbjct: 656 LSEFPSNMFYEGSLQNGISSFERLRRDVDFPWP--IADNPMMFWS--------NLGNEE- 704
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P I + +PY Q ++ + +A G
Sbjct: 705 ISASGT-SYLNRTEATNVEKIVTRFFKAGVQPQDIGIITPYEGQRSYIVSSM----QANG 759
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +A
Sbjct: 760 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLA 819
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 820 ILGNPKVLSKHPLWNCLLQHFK 841
>gi|336397671|ref|ZP_08578471.1| AAA ATPase [Prevotella multisaccharivorax DSM 17128]
gi|336067407|gb|EGN56041.1| AAA ATPase [Prevotella multisaccharivorax DSM 17128]
Length = 642
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 148/472 (31%), Positives = 231/472 (48%), Gaps = 75/472 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+++Q++A+ L K + ++ GPPGTGKT L E I + + +VLV A +N AVD
Sbjct: 193 LNETQERAVNEVLRAK-DVAVVHGPPGTGKTTTLVEAINETLMRESQVLVCAQSNMAVDW 251
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKL-----ASFVAEFERKKSDLRKD 349
+ EKL D G+N++R+GNP R++ K LG + + S + + +LR+
Sbjct: 252 ICEKLVDRGINVLRIGNPTRVN----DKMLGFTYERRFEAHPDYSQLWAIRKAIRELRR- 306
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPL------ 403
R+ +DD+ Q L++L + E E+ A+V+ +T G+A+ L
Sbjct: 307 -RKKGRDDNF----HQKLERLKSRATELEIRINAELFGEARVIASTLVGSANRLLEGQKF 361
Query: 404 -------------------IRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
IRR+ R ILAGD CQL P + S AL+GG+G +L
Sbjct: 362 GTLFIDEAAQALEAACWIPIRRVS-------RVILAGDHCQLPPTVKSIAALKGGLGKTL 414
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
+ER ++ T L QYRMN+ I ++S YGG + ++ + K
Sbjct: 415 MERIVE-NKPECVTLLGVQYRMNEEIMRFSSDWFYGGRVRTAPEILQR--------KSIL 465
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLD----LAGTGSFYNEGEAEIVVHHVFSLICAGVS 560
P+L LDT G + +G +E + + + N+GEAE+ + + +
Sbjct: 466 NLDRPILWLDT----GQIEMGPDEPSNKEQFIGESFGRVNKGEAELTLSSLQAYFTKIGK 521
Query: 561 PSA------IAVQSPYVAQVQHLR----ERLDDLPEAAGVEVATIDSFQGREADAVIISM 610
+ V SPY AQVQ+LR +R P + V T+D FQG+E D ++ISM
Sbjct: 522 ERILDERIDVGVISPYRAQVQYLRSLVRKREFFKPYRRLITVNTVDGFQGQERDIILISM 581
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VR+N G +GFL D RRMNVAITRA + ++ D T+ + F +L ++R
Sbjct: 582 VRANENGEIGFLHDLRRMNVAITRARMKLIILGDVQTLARHPFYKKLWEYVR 633
>gi|298707435|emb|CBJ30064.1| RNA helicase [Ectocarpus siliculosus]
Length = 1101
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 144/444 (32%), Positives = 219/444 (49%), Gaps = 61/444 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT ++ +QG +VLV AP+N AVD++ K+S GL +VR
Sbjct: 517 QRPLSLIQGPPGTGKTVTSATLVYHLARQGMGQVLVCAPSNVAVDHLTAKISATGLRVVR 576
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R +S V SL +V+ A K DLRK Q LKD+ + +L
Sbjct: 577 LCAKSREAVSTDVDHLSLHVMVR-------ALDTPDKQDLRK--LQLLKDE-----LGEL 622
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-TFDLV------------ 413
+ K ++ +E+L +A V+ T GA DP + ++ F V
Sbjct: 623 VAADEKRFRRLRSSAEREILQAADVICTTCVGAGDPRLSNVNLRFRQVLIDEATQAMEAE 682
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ +L GD CQL PV+L +K+ + G+ SL ER L G+ +L QYR
Sbjct: 683 CLIPIVMGAKQLVLVGDHCQLGPVVLCKKSSKAGLTQSLFERLVLL--GIRPVRLQVQYR 740
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
M+ ++ W S Y G+L + T ++ VD P+ P+ P+ L ++
Sbjct: 741 MHPCLSEWPSNMFYEGTLQNGVTEGERVMDQVDFPWPVPS----KPMFFL--------MT 788
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD 583
G EE + +GT S+ N EA V V + GV+P I V +PY Q +L + L
Sbjct: 789 TGVEE-ISSSGT-SYLNRTEATAVEKCVTRFLQKGVTPDQIGVVTPYEGQRSYLVDHLQR 846
Query: 584 LPE-----AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
+ +EVA++DSFQGRE D ++++ VRSN +GFL D RR+NVA+TRA
Sbjct: 847 TGSLRSSLYSEIEVASVDSFQGREKDLILLTCVRSNEHQGIGFLSDPRRLNVALTRARFG 906
Query: 639 VAVVCDSSTICHNTFLARLLRHIR 662
++ + + N L+ +
Sbjct: 907 CIIIGNPRILAKNPLWNALVNFYK 930
>gi|358371937|dbj|GAA88543.1| regulator of nonsense transcripts [Aspergillus kawachii IFO 4308]
Length = 1072
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 215/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 432 QRPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 491
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L +K + L A + +L
Sbjct: 492 VTAKSR-----------EDVESPVGFLSLHEQVRINDTNIEL---IKLNQLKAELGELSS 537
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 538 QDEKRLKQLTRSAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIP 597
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 598 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 655
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + + L D F P I P++ +LG EE
Sbjct: 656 LSEFPSNMFYEGSLQNGISSFERLRRDVDFPWP--IADNPMMFWS--------NLGNEE- 704
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P I + +PY Q ++ + +A G
Sbjct: 705 ISASGT-SYLNRTEATNVEKIVTRFFKAGVQPQDIGIITPYEGQRSYIVSSM----QANG 759
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +A
Sbjct: 760 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLA 819
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 820 ILGNPKVLSKHPLWNCLLQHFK 841
>gi|350629790|gb|EHA18163.1| hypothetical protein ASPNIDRAFT_119246 [Aspergillus niger ATCC
1015]
Length = 1071
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 215/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 432 QRPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 491
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L +K + L A + +L
Sbjct: 492 VTAKSR-----------EDVESPVGFLSLHEQVRINDTNIEL---IKLNQLKAELGELSS 537
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 538 QDEKRLKQLTRSAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIP 597
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 598 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 655
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + + L D F P I P++ +LG EE
Sbjct: 656 LSEFPSNMFYEGSLQNGISSFERLRRDVDFPWP--IADNPMMFWS--------NLGNEE- 704
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P I + +PY Q ++ + +A G
Sbjct: 705 ISASGT-SYLNRTEATNVEKIVTRFFKAGVQPQDIGIITPYEGQRSYIVSSM----QANG 759
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +A
Sbjct: 760 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLA 819
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 820 ILGNPKVLSKHPLWNCLLQHFK 841
>gi|115491919|ref|XP_001210587.1| ATP-dependent helicase NAM7 [Aspergillus terreus NIH2624]
gi|114197447|gb|EAU39147.1| ATP-dependent helicase NAM7 [Aspergillus terreus NIH2624]
Length = 1072
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 217/442 (49%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 432 QRPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 491
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L +K + L + + +L
Sbjct: 492 VTAKSR-----------EDVESPVGFLSLHEQVRLNDSNIEL---MKLNQLKSELGELSS 537
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 538 QDEKRLKQLTRSAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIP 597
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 598 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 655
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + + L D F P ++D + + S +LG EE
Sbjct: 656 LSEFPSNMFYEGSLQNGISSIERLRRDVDF---------PWPIMDNPMMFWS-NLGNEE- 704
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P I + +PY Q ++ + +A G
Sbjct: 705 ISASGT-SYLNRTEATNVEKIVTRFFKAGVQPQDIGIITPYEGQRSYIVSSM----QANG 759
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +A
Sbjct: 760 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLA 819
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 820 ILGNPKVLSKHPLWNCLLQHFK 841
>gi|430813983|emb|CCJ28727.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1045
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 144/447 (32%), Positives = 218/447 (48%), Gaps = 71/447 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT I+ A +VLV AP+N AVD + +K+ GL +VR
Sbjct: 459 QKPLSLIQGPPGTGKTVTSATIVYHLAKMNSGQVLVCAPSNVAVDQLCKKIHQTGLKVVR 518
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E ++S +AS + + +D +L++ ++ +R L
Sbjct: 519 VSAKSR-----------EDLESPVASLTLHEQVRNNDTNTELQKLIQ-------LRDELG 560
Query: 369 QLGKTLKKKEKETVK----EVLSSAQVVLATNTGAADPLIRRLDTFDL------------ 412
+L +KK K VK E+LS+A V+ AT G DP RL F
Sbjct: 561 ELSSQDEKKYKALVKMCEKEILSNADVICATCVGCGDP---RLSKFKFRTVLIDEATQAT 617
Query: 413 ---------VG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
+G K+ +L GD QL PVI+++KA + G+ SL ER L G+ +LT
Sbjct: 618 EPECMIPLVMGCKQVVLVGDHQQLGPVIMNKKAAKAGLQQSLFERLVVL--GISPIRLTV 675
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ ++ + S Y G+L + + L + F P + P++ +
Sbjct: 676 QYRMHPCLSEFPSNMFYEGTLQNGVSKNERLRKNVDFPWP--VNDTPMMF--------HM 725
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD 582
SLG EE + +GT S+ N EA V AGV S I + +PY Q ++ +
Sbjct: 726 SLGQEE-ISSSGT-SYLNRTEASNCEKIVVKFFKAGVKFSQIGIITPYEGQRSYIVSSMQ 783
Query: 583 -------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
DL + +EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA
Sbjct: 784 QSGSLRKDLYKE--IEVASVDAFQGREKDYIIVSCVRSNEHQGIGFLSDPRRLNVALTRA 841
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIR 662
V ++ + + + LL H +
Sbjct: 842 KYGVVILGNPKVLSKHPLWYHLLLHYK 868
>gi|448081930|ref|XP_004195009.1| Piso0_005544 [Millerozyma farinosa CBS 7064]
gi|359376431|emb|CCE87013.1| Piso0_005544 [Millerozyma farinosa CBS 7064]
Length = 959
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 150/462 (32%), Positives = 223/462 (48%), Gaps = 66/462 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 408 LNSSQTNAVKSVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKLHKKRILVCAPSNVAVD 465
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ KL+ +GL +VR+ +R + K L + +K+ +K ++R L +
Sbjct: 466 HLANKLNLLGLKVVRLTAKSREDVESSVKHLA--LHNKVYDSARGELKKLYNMRNSLGEL 523
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
++D+ + L QL +T + + +LSS VV T GA D RRL F
Sbjct: 524 SEEDT------KRLIQLSRTAEMR-------LLSSCDVVCCTCVGAGD---RRLARFKFR 567
Query: 414 ----------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
K+ IL GD QL PVIL ++A + G+ SL ER L
Sbjct: 568 TVLIDESTQASEPEVLIPIVKGAKQVILVGDHQQLGPVILEKRAGDAGLKQSLFERLVVL 627
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G + +L QYRMN ++ + S Y GSL + T L+ + F P + P++
Sbjct: 628 --GHVPIRLEVQYRMNPCLSEFPSNMFYEGSLQNGVTTKERLIKNASFPWP--VIDHPMM 683
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ G EE ++G+G SF N EA V + L G+ P I V +PY
Sbjct: 684 FW--------ANYGREE---ISGSGHSFLNRVEAMNVEKIITRLFKDGIGPEQIGVITPY 732
Query: 571 VAQVQHLRERLD---DLPEAAG----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
Q +L + + L E VE+ ++D+FQGRE D +I+S VR+N +GFL
Sbjct: 733 EGQRAYLIQYMSINSTLTEMKDRYLEVEITSVDAFQGREKDFIILSCVRANDQQTIGFLS 792
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
DSRR+NVA+TRA + ++ + +C NT LL H R G
Sbjct: 793 DSRRLNVALTRAKYGLVILGNPRALCRNTLWNHLLVHFREKG 834
>gi|421132406|ref|ZP_15592574.1| AAA domain protein [Leptospira kirschneri str. 2008720114]
gi|410356171|gb|EKP03528.1| AAA domain protein [Leptospira kirschneri str. 2008720114]
Length = 631
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 144/468 (30%), Positives = 229/468 (48%), Gaps = 70/468 (14%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTFLNESQKNAVVHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
N+A D +VE +S G++++R+G+PAR++ +L G+++ ++ V E
Sbjct: 242 NSACDLLVESISARGISVLRLGHPARVNEIAIHSTLDYKLFHHPDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
++ L+++ + K+ + +K+L KT++ E + ++SS V+++T +
Sbjct: 301 SKQAKKLKRNFGE--KEREERKNLFMEVKELKKTIRSMEIGLIDSLVSSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGI 440
A ++ TFD L R ILAGD QL P + S K +
Sbjct: 359 ARDILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK---NSL 414
Query: 441 GVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+L E+AA L L TQYRM + I S+ SKE Y L S + PF
Sbjct: 415 ETTLFEKAAERLESHGRVFLLDTQYRMKEEIVSFPSKEFYSDILKSGRPEKEKIPETFPF 474
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHV 551
L + +D AGT S N EA++ V
Sbjct: 475 ------------------------LNAFQWIDTAGTDSEEVIIDDSISNPFEADLQVRLC 510
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE +++ V
Sbjct: 511 FLLKENDWPEEEITILSPYRAQVRLISEKLKDVG-LTKINVSTIDSFQGRENRCILLGFV 569
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
RSN+ G GFL +SRR+NV +TRA + + DSST+ + FL +L+R
Sbjct: 570 RSNSEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLCKLIR 617
>gi|46136829|ref|XP_390106.1| RNT1_NEUCR Regulator of nonsense transcripts 1 homolog [Gibberella
zeae PH-1]
Length = 1083
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 235/485 (48%), Gaps = 60/485 (12%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGT 262
TL G + + ++ N WS L + + SQ AI L K PL +IQGPPGT
Sbjct: 421 TLLGHEVQLQVMKTNLPKKWSAPGLPDL-----NPSQVGAIKAVLQK--PLSLIQGPPGT 473
Query: 263 GKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVAS 321
GKT II A G +VLV AP+N AVD + E++ GL +VR+ +R
Sbjct: 474 GKTVTSATIIYHLAKMSGNQVLVCAPSNVAVDQLCERVHRTGLKVVRLTAKSR------- 526
Query: 322 KSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKET 381
E V+S + SF+A E+ + + + + +K L + +L Q K K+ K
Sbjct: 527 ----EDVESSV-SFLALHEQVR--MSEHNSELVKLSQLKNELGELSSQDEKKYKQLTKIA 579
Query: 382 VKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGD 422
+++L++A VV T GA DP + ++ +++ K+ +L GD
Sbjct: 580 ERDILNNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGD 639
Query: 423 QCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
QL PVI+++KA + G+ SL ER L + +L QYRM+ ++ + S Y GS
Sbjct: 640 HKQLGPVIMNKKAAKAGLNQSLFERLVNLK--LSPIRLNIQYRMHPCLSEFPSNMFYDGS 697
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG 542
L + T + L D F P + + P++ +LG EE + +GT S+ N
Sbjct: 698 LQNGVTHENRLRKDVDFPWP--VGEMPMMFWS--------NLGHEE-ISASGT-SYLNRT 745
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD-----LPEAAGVEVATIDS 597
EA V V AGV P+ I V +PY Q ++ + + VEVA++D+
Sbjct: 746 EASNVEKAVTRFFKAGVKPADIGVITPYEGQRSYIVTTMQNSGTYKKEYYKEVEVASVDA 805
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ + + + L
Sbjct: 806 FQGREKDFIVLSCVRSNDNQGIGFLSDPRRLNVALTRAKYGLVILGNPKVLSKHELWHNL 865
Query: 658 LRHIR 662
L H +
Sbjct: 866 LVHFK 870
>gi|367008616|ref|XP_003678809.1| hypothetical protein TDEL_0A02660 [Torulaspora delbrueckii]
gi|359746466|emb|CCE89598.1| hypothetical protein TDEL_0A02660 [Torulaspora delbrueckii]
Length = 908
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 153/447 (34%), Positives = 215/447 (48%), Gaps = 67/447 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + ER+LV AP+N AVD++ KL D+GL +VR
Sbjct: 387 QRPLSLIQGPPGTGKTVTSATIVYHLSKMHNERILVCAPSNVAVDHLAAKLRDLGLKVVR 446
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R + +V++ +L +V K +L+K LR + L+ G
Sbjct: 447 LTAKSREDVESSVSNLALHNLVARS----------SKGELKKLLRLKEEVGELSIGD--- 493
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-FDLV------------ 413
K+ K ++K E E +L A VV T GA D +RLDT F V
Sbjct: 494 TKKFVKLVRKTESE----ILKKADVVCCTCVGAGD---KRLDTRFRTVLIDESTQASEPE 546
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD QL PVIL RKA + G+ SL ER L G + +L QYR
Sbjct: 547 CLIPIVKGAKQIILVGDHQQLGPVILERKAGDAGLKQSLFERLIAL--GHVPLRLEVQYR 604
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
MN ++ + S Y GSL + T+ + ++ F P I P++ YG
Sbjct: 605 MNPYLSDFPSNVFYEGSLQNGVTIEQRTVTNSTFPWP--IHGVPMMFWAN---YG----- 654
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY------VAQVQHLRE 579
E + GT S+ N EA + L GV P I V +PY + Q +
Sbjct: 655 -REEISANGT-SYLNRIEAMNCERIITRLFKDGVKPEQIGVITPYEGQRAFILQYMQMNG 712
Query: 580 RLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
LD DL VEVA++D+FQGRE D +I+S VR+N +GFL D RR+NV +TRA
Sbjct: 713 SLDRDL--YLSVEVASVDAFQGREKDYIILSCVRANEQQIIGFLSDPRRLNVGLTRAKYG 770
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFG 665
+ ++ + + N LL H R G
Sbjct: 771 LVILGNPRALSTNALWNNLLIHFREKG 797
>gi|189461769|ref|ZP_03010554.1| hypothetical protein BACCOP_02435 [Bacteroides coprocola DSM 17136]
gi|189431529|gb|EDV00514.1| putative DNA helicase [Bacteroides coprocola DSM 17136]
Length = 629
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 147/464 (31%), Positives = 222/464 (47%), Gaps = 73/464 (15%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q++A+ L+ K + I+ GPPGTGKT L E++ + + +VLV A +N AVD + E
Sbjct: 194 TQEEAMNKVLHAK-DVAIVHGPPGTGKTTTLVEVVYETLHRENQVLVCAQSNMAVDWISE 252
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDL 350
KL D G++++R+GNP+R V K+ SF E FE +RK +
Sbjct: 253 KLVDRGVSVLRIGNPSR-------------VNDKMLSFTYERRFESHPDYPQLWSIRKAI 299
Query: 351 RQCLKDDSLAA---GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--R 405
R+ A +RQ + L + E + + S A+V+ T G+A+ L+ +
Sbjct: 300 RELYARSRKGAEREAVRQKINSLKDRATELEIRINESLFSEARVIACTLVGSANRLLTGQ 359
Query: 406 RLDTFDL----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAA 449
+ T + R ILAGD CQL P + + +AL G+G +L++
Sbjct: 360 KFGTLFIDEAAQALEAACWIPIRKADRVILAGDHCQLPPTVKAPEALRAGLGHTLMQTIV 419
Query: 450 TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVA--SHLLVDTPFVKPTWITQ 507
++ L QYRMND I ++S+ YGG L S+ V S L DTP WI
Sbjct: 420 KNKPDTVSL-LKLQYRMNDEIMRFSSEWFYGGMLQSAPEVKYRSILDFDTPI---EWI-- 473
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA---- 563
+ L C E G N+ EAE+ + + I
Sbjct: 474 ------------NTEGLDCNEEFIGENYGRI-NKSEAELSIEQLKGYITKIGRERFLNER 520
Query: 564 --IAVQSPYVAQVQHLRE--RLDDL--PEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
+ + SPY AQVQ+LR R D P + + T+D FQG+E D ++IS+VR+N G
Sbjct: 521 IDVGMISPYKAQVQYLRRLVRNDAFFKPYRQAITINTVDGFQGQERDVILISLVRANEEG 580
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+GFL D RRMNVAITRA + ++ D+ST+ + F +L +I
Sbjct: 581 QIGFLNDLRRMNVAITRARMKLIILGDASTLTRHAFYKKLYTYI 624
>gi|401883858|gb|EJT48042.1| DNA helicase [Trichosporon asahii var. asahii CBS 2479]
gi|406696230|gb|EKC99524.1| DNA helicase [Trichosporon asahii var. asahii CBS 8904]
Length = 721
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 204/684 (29%), Positives = 310/684 (45%), Gaps = 146/684 (21%)
Query: 100 LPPTTLSPGDMVCVRVCDSR------GACATSCIQGFVHNLGEDGCTISVALESRHGDPT 153
LPP T PGD V V S G ++G V+ +G ISVA+ GD
Sbjct: 67 LPPHTFRPGDPVRVEEYVSAPKKGKAGKEELPGVEGVVYKVGP--VKISVAVS--EGDVD 122
Query: 154 FSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAA------VVTLFGD 207
+ RI LA+++ ++R + L L++ + + S + V L G
Sbjct: 123 LPERL-------RIVKLANSVVFDRMRKTLEHLRRLVVPEAGASTPSADNMMLVNALLG- 174
Query: 208 KEDVTWLE------------ENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
+ TW + E+ +W +G+ +DSQK+AI L + +
Sbjct: 175 MQKPTWSKTVSAPTLQNAEAEDGTIEW--------IGERLNDSQKEAIDFCL-RADSVAC 225
Query: 256 IQGPPGTGKTGLLKEII----ARAVQQG----ERVLVTAPTNAAVDNMVEKLSDVGL--- 304
I GPPGTGKT L E+I AR VQ G R+LVT P+N A+DN++ +LS V
Sbjct: 226 IHGPPGTGKTHTLVELILQFLARPVQPGGAVPPRILVTTPSNLALDNLLARLSHVARTDP 285
Query: 305 ---------NIVRVGNPARISPAVASKSLG-EIVKSKLASFVA----EFERKKSDL--RK 348
+I+R+G+P+R+S + +L + V + VA E + SDL ++
Sbjct: 286 KAGALLPPGSILRLGHPSRVSKDLLPATLDYKAVHGDAGALVADIGNEIKGHLSDLGKKR 345
Query: 349 DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD 408
R +K + ++ ++L + + +E + VK V+ A+VVLAT A I ++
Sbjct: 346 GERGAVKGKARGEKWGEV-RELRREYRAREAKVVKTVVGEARVVLATCHSAGSRQINNVN 404
Query: 409 TFD-------------------LVGKRCILAGDQCQLAPVILSR---------------K 434
FD L K+ +LAGD QL P I S+ K
Sbjct: 405 -FDVAVIDEATQALEPVAWVPILKAKKLVLAGDPQQLPPTITSKPDKLPKLKDDAKVEDK 463
Query: 435 ALEGGIG----------VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI 484
A + + +L +R L+ + L QYRMN+ IA + SK +YGG L+
Sbjct: 464 AKDLSLQPKLRPPRTLETTLFDRLEDLYGAGIKRILKVQYRMNEKIAEFPSKTLYGGELV 523
Query: 485 SSSTVASHLLVDTPFVK-----PTWITQCPLLLLDTRLPYGSLSLGC-------EEHLDL 532
S +VA+H L+D P V+ P++ DT GC E+ L L
Sbjct: 524 SDPSVATHTLMDLPSVETDGEDAEEALSPPVIFYDT--------AGCDFRERDEEDELAL 575
Query: 533 AGT-----GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
A GS NE EA+IV V L+ GV + V PY AQV L + L + E
Sbjct: 576 AKRKEGEGGSKSNENEADIVARVVRRLVSLGVPEEEVGVVVPYQAQVAVLAKMLRE--EF 633
Query: 588 AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSST 647
+ + T+D QG+E DAV++S+VRSN G VGFLG +R+NVA+TR + + VV DS T
Sbjct: 634 PNMTIGTVDGLQGQERDAVVLSLVRSNEKGDVGFLGQYKRLNVAMTRPRRQLVVVGDSET 693
Query: 648 ICHNT-FLARLLRHIRYFGRVKHA 670
+ + +L ++ + V++A
Sbjct: 694 VAKGSAYLKSWIKWLEDNADVRYA 717
>gi|312137189|ref|YP_004004526.1| DNA helicase [Methanothermus fervidus DSM 2088]
gi|311224908|gb|ADP77764.1| DNA helicase [Methanothermus fervidus DSM 2088]
Length = 666
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 199/720 (27%), Positives = 320/720 (44%), Gaps = 145/720 (20%)
Query: 9 IQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQEL 68
I+ ++ + +++ L+ +ER+AE+E + E+ + R +++
Sbjct: 4 IKRKIKNYVRKLIRLVEMEREAEIEAMRAEMARL------------------SAREREKV 45
Query: 69 CDTICNLFVVSTSTGLG---GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATS 125
I NL LG G LV + G + T + GD+V + S+G S
Sbjct: 46 GRAINNL----NGKILGRELGFTLVRY---GRRKEIETEIKVGDLVLI----SKGNPLYS 94
Query: 126 CIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALML 185
+ G V G I+VALE K K+VRID A+ +T+ R + L
Sbjct: 95 DLVGTVAEKG--NRFITVALED------VPKWALKNVRID---LYANDITFRRMIDNLKN 143
Query: 186 LQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIAL 245
L +N + ++ ++ D+ EE +L D K ++SQ +AI+
Sbjct: 144 LNENTIK----VLSYILDEATPDLDIKK-EEFELID-----------KKLNESQIEAISK 187
Query: 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN 305
L K +I GP GTGKT + EII + V++G +VLVTA +N AVDN++E+L + +
Sbjct: 188 ALATK-DFFLIHGPFGTGKTRTILEIIKQEVKRGNKVLVTAESNIAVDNILERLPE-NMK 245
Query: 306 IVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLRKD----------LRQCL 354
VRVG+P R+S ++L ++ + S + ++K L K+ LR+ L
Sbjct: 246 CVRVGHPQRVSKKNIERTLAFQVEEHPKYSKIERLQKKIDKLTKERDRYHKPTPALRRGL 305
Query: 355 KDD---------------------SLAAGIR--QLLKQLGKTLKKKEKETVKEVLSSAQV 391
D S+A IR + +L + + E V+ ++ + V
Sbjct: 306 SDRQIIRNARRRRGVRGISPNVMISMANWIRINNRITELYNKIDEIENRIVENIIEESDV 365
Query: 392 VLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILS 432
VL+TN+ +R ++ FD+V R ILAGD QL P IL+
Sbjct: 366 VLSTNSSVYLEYLRDVE-FDVVIVDEASQATIPSVLIPLSRAPRFILAGDHRQLPPTILN 424
Query: 433 --RKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL------- 483
K LE + L+ + + + L QYRMN + + + E Y G +
Sbjct: 425 PDAKELEKTLFSILISKYPSK-----SHMLEYQYRMNPKLMEFPNNEFYNGKIKSAAGLE 479
Query: 484 -ISSSTVASHLLVDTPFVKP--TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540
+S + + D K + + PL +DT L + G+ S YN
Sbjct: 480 KLSPKDLIKKEIKDENLSKELQEMLIRDPLTFIDT------CDLDNKFERRFKGSPSLYN 533
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQG 600
EA+I + I +GVS I + +PY QV D L + A VEV T+D +QG
Sbjct: 534 PLEADICILIQNFFIKSGVSTDDIGIITPYDDQV-------DYLSKIAKVEVNTVDGYQG 586
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
RE + +IISMVRSN G +GFL D RR+NV++TRA + + ++ DS T+ + RL+ +
Sbjct: 587 REKEIIIISMVRSNKKGKIGFLEDLRRLNVSLTRAKRKLVIIGDSETLSVHPSYRRLIEY 646
>gi|212532107|ref|XP_002146210.1| nonsense transcript regulator, putative [Talaromyces marneffei ATCC
18224]
gi|210071574|gb|EEA25663.1| nonsense transcript regulator, putative [Talaromyces marneffei ATCC
18224]
Length = 1093
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 140/442 (31%), Positives = 214/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 455 QKPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 514
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L K + L + + +L
Sbjct: 515 VTAKSR-----------EDVESPVRFLSLHEQVRMNDSNIELN---KLNQLKSELGELSS 560
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K K+ + +E+L++A V+ T GA DP + +
Sbjct: 561 QDEKKFKQLTRAAEREILTNADVICCTCVGAGDPRLAKFKFRTVLIDESTQSAEPECMIP 620
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 621 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 678
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + ++A L D F P + + P++ +LG EE
Sbjct: 679 LSEFPSNMFYEGSLQNGVSMAQRLRRDVDFPWP--VAENPMMFWS--------NLGNEE- 727
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV PS I + +PY Q ++ + +A G
Sbjct: 728 ISASGT-SYLNRTEAANVEKIVTRFFKAGVQPSGIGIITPYEGQRSYVVSSM----QATG 782
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA V
Sbjct: 783 TFKKEHYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGVV 842
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL H +
Sbjct: 843 ILGNPKVLSKHPLWNYLLLHFK 864
>gi|408397555|gb|EKJ76696.1| hypothetical protein FPSE_03107 [Fusarium pseudograminearum CS3096]
Length = 1083
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 235/485 (48%), Gaps = 60/485 (12%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGT 262
TL G + + ++ N WS L + + SQ AI L K PL +IQGPPGT
Sbjct: 421 TLLGHEVQLQVMKTNLPKKWSAPGLPDL-----NPSQVGAIKAVLQK--PLSLIQGPPGT 473
Query: 263 GKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVAS 321
GKT II A G +VLV AP+N AVD + E++ GL +VR+ +R
Sbjct: 474 GKTVTSATIIYHLAKMSGNQVLVCAPSNVAVDQLCERVHRTGLKVVRLTAKSR------- 526
Query: 322 KSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKET 381
E V+S + SF+A E+ + + + + +K L + +L Q K K+ K
Sbjct: 527 ----EDVESSV-SFLALHEQVR--MSEHNSELVKLSQLKNELGELSSQDEKKYKQLTKIA 579
Query: 382 VKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGD 422
+++L++A VV T GA DP + ++ +++ K+ +L GD
Sbjct: 580 ERDILNNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGD 639
Query: 423 QCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
QL PVI+++KA + G+ SL ER L + +L QYRM+ ++ + S Y GS
Sbjct: 640 HKQLGPVIMNKKAAKAGLNQSLFERLVNLK--LSPIRLNIQYRMHPCLSEFPSNMFYDGS 697
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG 542
L + T + L D F P + + P++ +LG EE + +GT S+ N
Sbjct: 698 LQNGVTHENRLRKDVDFPWP--VGEMPMMFWS--------NLGHEE-ISASGT-SYLNRT 745
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD-----LPEAAGVEVATIDS 597
EA V V AGV P+ I V +PY Q ++ + + VEVA++D+
Sbjct: 746 EASNVEKAVTRFFKAGVKPADIGVITPYEGQRSYIVTTMQNSGTYKKEYYKEVEVASVDA 805
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ + + + L
Sbjct: 806 FQGREKDFIVLSCVRSNDNQGIGFLSDPRRLNVALTRAKYGLVILGNPKVLSKHELWHNL 865
Query: 658 LRHIR 662
L H +
Sbjct: 866 LVHFK 870
>gi|342879017|gb|EGU80294.1| hypothetical protein FOXB_09221 [Fusarium oxysporum Fo5176]
Length = 1083
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 235/485 (48%), Gaps = 60/485 (12%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGT 262
TL G + + ++ N WS L + + SQ AI L K PL +IQGPPGT
Sbjct: 421 TLLGHEVQLQVMKTNLPKKWSAPGLPDL-----NPSQVGAIKAVLQK--PLSLIQGPPGT 473
Query: 263 GKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVAS 321
GKT II A G +VLV AP+N AVD + E++ GL +VR+ +R
Sbjct: 474 GKTVTSATIIYHLAKMSGNQVLVCAPSNVAVDQLCERVHRTGLKVVRLTAKSR------- 526
Query: 322 KSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKET 381
E V+S + SF+A E+ + + + + +K L + +L Q K K+ K
Sbjct: 527 ----EDVESSV-SFLALHEQVR--MSEHNSELVKLSQLKNELGELSSQDEKKYKQLTKIA 579
Query: 382 VKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAGD 422
+++L++A VV T GA DP + ++ +++ K+ +L GD
Sbjct: 580 ERDILNNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLVLGCKQVVLVGD 639
Query: 423 QCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
QL PVI+++KA + G+ SL ER L + +L QYRM+ ++ + S Y GS
Sbjct: 640 HKQLGPVIMNKKAAKAGLNQSLFERLVNLK--LSPIRLNIQYRMHPCLSEFPSNMFYDGS 697
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG 542
L + T + L D F P + + P++ +LG EE + +GT S+ N
Sbjct: 698 LQNGVTHENRLRKDVDFPWP--VGEMPMMFWS--------NLGHEE-ISASGT-SYLNRT 745
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD-----LPEAAGVEVATIDS 597
EA V V AGV P+ I V +PY Q ++ + + VEVA++D+
Sbjct: 746 EASNVEKAVTRFFKAGVKPADIGVITPYEGQRSYIVTTMQNSGTYKKEYYKEVEVASVDA 805
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ + + + L
Sbjct: 806 FQGREKDFIVLSCVRSNDNQGIGFLSDPRRLNVALTRAKYGLVILGNPKVLSKHELWHNL 865
Query: 658 LRHIR 662
L H +
Sbjct: 866 LVHFK 870
>gi|428177002|gb|EKX45884.1| hypothetical protein GUITHDRAFT_159666 [Guillardia theta CCMP2712]
Length = 1030
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 218/448 (48%), Gaps = 71/448 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT I+ + G +VLVTAP+N AVD++ EK+ GL +VR
Sbjct: 480 QQPLSVIQGPPGTGKTVTSACIVYHLSRMGHGQVLVTAPSNVAVDHLTEKIHKTGLKVVR 539
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R I +V +L V+ S AEF RK L+K+L + D
Sbjct: 540 MCAKSREAIGSSVEQLTLHYQVQHLDTSDKAEF-RKLQQLKKELGELSTQDE-------- 590
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
K K+ ++ T +E+L +A V+ T GA D RL+ F
Sbjct: 591 -----KKYKQLKRATERELLMAADVICTTCVGAGDA---RLNGFRFTKVLVDECTQATEP 642
Query: 414 ---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
K+ +L GD CQL PV++ +KA + G+ SL ER L GV +L QY
Sbjct: 643 ECLIPIAMGAKQLVLVGDHCQLGPVVMCKKAAKAGLQQSLFERMVNL--GVKPVRLQVQY 700
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM+ ++ + S Y G+L + T A F P + P++ +S
Sbjct: 701 RMHPILSEFPSNTFYEGTLQNGVTHAERHAHAIDFPWP--VASKPMMFY--------IST 750
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQH---- 576
G EE L +GT S+ N EA V V + GV P I + +PY Q VQ+
Sbjct: 751 GAEE-LSASGT-SYLNRTEASNVEKIVTRFLKGGVVPEQIGIITPYEGQRAYIVQYMSRN 808
Query: 577 --LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
LR++L + +EVA++D+FQGRE D +I+S VRSN ++GF+ + RR+NVA+TR
Sbjct: 809 GSLRKQLYN-----ELEVASVDAFQGREKDFIILSCVRSNEGKSIGFVNNPRRLNVALTR 863
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIR 662
A V ++ + + LL H +
Sbjct: 864 ARYGVVILGNPKVLAKQPLWNNLLCHFK 891
>gi|396485880|ref|XP_003842280.1| similar to regulator of nonsense transcripts 1 [Leptosphaeria
maculans JN3]
gi|312218856|emb|CBX98801.1| similar to regulator of nonsense transcripts 1 [Leptosphaeria
maculans JN3]
Length = 1080
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 140/442 (31%), Positives = 213/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 453 QKPLSLIQGPPGTGKTVTSATIIYHLCKISGSQVLVCAPSNVAVDQLCERIHLTGLKTVR 512
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L K + L + + +L
Sbjct: 513 VTAKSR-----------EDVESPVGFLSLHEQVRMNDTNVELN---KLNQLKSDVGELSS 558
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K K+ + +E+L++A V+ T GA DP + ++
Sbjct: 559 QDEKKFKQLTRAAEREILNAADVICCTCVGAGDPRLSKMKFRTVLIDESTQSAEPECMIP 618
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA G+ SL ER L G +L QYRM+
Sbjct: 619 LVLGCKQVVLVGDHQQLGPVIMNKKAATAGLNQSLFERLVIL--GCSPIRLQVQYRMHPC 676
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T+ + D F P + P++ +LG EE
Sbjct: 677 LSEFPSNMFYEGSLQNGVTMQERIRRDVDFPWP--VVDSPMMFWS--------NLGVEE- 725
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA+ V V AGV PS I + +PY Q ++ + +A G
Sbjct: 726 ISASGT-SYLNRTEAQNVEKIVTRFFKAGVQPSDIGIITPYEGQRSYVVSSM----QATG 780
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VEVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 781 SFKKENYKEVEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLV 840
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL H +
Sbjct: 841 ILGNPKVLSKHPLWHYLLLHFK 862
>gi|154305574|ref|XP_001553189.1| hypothetical protein BC1G_08556 [Botryotinia fuckeliana B05.10]
gi|347828532|emb|CCD44229.1| similar to regulator of nonsense transcripts 1 [Botryotinia
fuckeliana]
Length = 1100
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 214/438 (48%), Gaps = 53/438 (12%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT +I + G +VLV AP+N AVD + E++ L +VR
Sbjct: 465 QKPLSLIQGPPGTGKTVTSATVIYHLAKVNGGQVLVCAPSNVAVDQLCERIHRTQLKVVR 524
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ +R E V+S + + + +D +L + + L + + +L
Sbjct: 525 LTAKSR-----------EDVESSVGFLSLHEQVRMNDSNHELAKLTQ---LKSELGELSS 570
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K K + +E+LS+A V+ T GA DP + ++
Sbjct: 571 QDEKKFKALTRAAEREILSNADVICCTCVGAGDPRLAKMKFRTVLIDESTQSAEPECMIP 630
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER +H G+ +L QYRM+
Sbjct: 631 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFER--LVHLGLNPIRLNVQYRMHPC 688
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T+ L D F P + DT + + S +LG EE
Sbjct: 689 LSEFPSNMFYDGSLQNGVTMQQRLRRDVDF---------PWPVADTPMMFWS-NLGNEE- 737
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL----- 584
+ +GT S+ N EA V V AGV P I V +PY Q ++ + +
Sbjct: 738 ISASGT-SYLNRTEASNVEKIVTRFFKAGVQPGDIGVITPYEGQRSYVVTSMQNAGSFKK 796
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
VEVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA + +V +
Sbjct: 797 EHYKEVEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVIVGN 856
Query: 645 SSTICHNTFLARLLRHIR 662
+ + LL+H +
Sbjct: 857 PKVLSKHPLWHYLLQHFK 874
>gi|121701377|ref|XP_001268953.1| regulator of nonsense transcripts, putative [Aspergillus clavatus
NRRL 1]
gi|119397096|gb|EAW07527.1| regulator of nonsense transcripts, putative [Aspergillus clavatus
NRRL 1]
Length = 1079
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 216/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RP+ +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 439 QRPMSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 498
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + F++ E+ + L + +K + L A + +L
Sbjct: 499 VTAKSR-----------EDVESPVG-FLSLHEQVR--LNDSNIELIKLNQLKAELGELSS 544
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 545 QDEKRLKQLTRSAEREILNNADVICCTCVGAGDPRLSKLKFRTVLIDESTQSAEPECMIP 604
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 605 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 662
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + + L D F P + P++ +LG EE
Sbjct: 663 LSQFPSNMFYEGSLQNGVSAIDRLRRDVDFPWP--VVDSPMMFWS--------NLGNEE- 711
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P I + +PY Q ++ + +A G
Sbjct: 712 ISASGT-SYLNRTEATNVEKIVTRFFKAGVHPQDIGIITPYEGQRSYIVSSM----QANG 766
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 767 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLV 826
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 827 ILGNPKVLSKHPLWNCLLQHFK 848
>gi|119495335|ref|XP_001264454.1| regulator of nonsense transcripts, putative [Neosartorya fischeri
NRRL 181]
gi|119412616|gb|EAW22557.1| regulator of nonsense transcripts, putative [Neosartorya fischeri
NRRL 181]
Length = 1079
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 141/442 (31%), Positives = 215/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RP+ +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 439 QRPMSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 498
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L +K + L A + +L
Sbjct: 499 VTAKSR-----------EDVESPVGFLSLHEQVRLNDSNIEL---IKLNQLKAELGELSS 544
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 545 QDEKRLKQLTRSAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIP 604
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 605 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 662
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + + L D F P + P++ +LG EE
Sbjct: 663 LSEFPSNMFYEGSLQNGVSAFDRLRRDVDFPWP--VVDSPMMFWS--------NLGNEE- 711
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P+ I + +PY Q ++ + +A G
Sbjct: 712 ISASGT-SYLNRTEATNVEKIVTRFFKAGVQPADIGIITPYEGQRSYIVSSM----QANG 766
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 767 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLV 826
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 827 ILGNPKVLSKHPLWNCLLQHFK 848
>gi|70995842|ref|XP_752676.1| regulator of nonsense transcripts [Aspergillus fumigatus Af293]
gi|42820708|emb|CAF32021.1| regulator of nonsense transcripts, putative [Aspergillus fumigatus]
gi|66850311|gb|EAL90638.1| regulator of nonsense transcripts, putative [Aspergillus fumigatus
Af293]
gi|159131430|gb|EDP56543.1| regulator of nonsense transcripts, putative [Aspergillus fumigatus
A1163]
Length = 1079
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 141/442 (31%), Positives = 215/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RP+ +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 439 QRPMSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 498
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L +K + L A + +L
Sbjct: 499 VTAKSR-----------EDVESPVGFLSLHEQVRLNDSNIEL---IKLNQLKAELGELSS 544
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 545 QDEKRLKQLTRSAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIP 604
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 605 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 662
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + + L D F P + P++ +LG EE
Sbjct: 663 LSEFPSNMFYEGSLQNGVSAFDRLRRDVDFPWP--VVDSPMMFWS--------NLGNEE- 711
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P+ I + +PY Q ++ + +A G
Sbjct: 712 ISASGT-SYLNRTEATNVEKIVTRFFKAGVQPADIGIITPYEGQRSYIVSSM----QANG 766
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 767 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLV 826
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 827 ILGNPKVLSKHPLWNCLLQHFK 848
>gi|19577367|emb|CAD28448.1| possible regulator of nonsense transcripts [Aspergillus fumigatus]
Length = 1060
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 141/442 (31%), Positives = 215/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RP+ +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 420 QRPMSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 479
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L +K + L A + +L
Sbjct: 480 VTAKSR-----------EDVESPVGFLSLHEQVRLNDSNIEL---IKLNQLKAELGELSS 525
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 526 QDEKRLKQLTRSAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIP 585
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 586 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 643
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + + L D F P + P++ +LG EE
Sbjct: 644 LSEFPSNMFYEGSLQNGVSAFDRLRRDVDFPWP--VVDSPMMFWS--------NLGNEE- 692
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P+ I + +PY Q ++ + +A G
Sbjct: 693 ISASGT-SYLNRTEATNVEKIVTRFFKAGVQPADIGIITPYEGQRSYIVSSM----QANG 747
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 748 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLV 807
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 808 ILGNPKVLSKHPLWNCLLQHFK 829
>gi|124802033|ref|XP_001347342.1| regulator of nonsense transcripts, putative [Plasmodium falciparum
3D7]
gi|23494920|gb|AAN35255.1|AE014829_55 regulator of nonsense transcripts, putative [Plasmodium falciparum
3D7]
Length = 1554
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 220/430 (51%), Gaps = 53/430 (12%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT ++ V+ +VLVTAP+N AVD + ++ GL +VR+
Sbjct: 802 PLSLIQGPPGTGKTLTCATLVYHLVKMNMGKVLVTAPSNVAVDQLSVRIHRSGLKVVRLC 861
Query: 311 NPARIS-PAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+ +R S P++A + + + K+D+ ++L + L+ L + +L ++
Sbjct: 862 SKSRESVPSIA----------EYLYLHNQMKLLKTDIAEELNKLLE---LKEEVGELSQK 908
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
+ LKK E+L A V+ T GA D +++ ++
Sbjct: 909 DERRLKKLILFAEHEILIEADVICCTCVGAMDKRLKKFRFRQVLVDEATQSTEPECLVPL 968
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
K+ +L GD CQL P+I+ +KA G+G SL ER L G+ +L QYRM+ A+
Sbjct: 969 VTGAKQIVLVGDHCQLGPIIVCKKAANAGLGKSLFERLVML--GITPFRLEVQYRMHPAL 1026
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ + S Y GSL + T+ F P +CP+ + S G EE +
Sbjct: 1027 SEFPSYVFYDGSLQNGITLKEREYPLKSFPWPN--AKCPMFFYN--------STGLEE-M 1075
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ---VQHLRERLDDLPEA 587
+GT S+ N EA + V +L+ G+ PS I V +PY Q + L ++ +
Sbjct: 1076 SASGT-SYLNRSEASNMEKLVRTLLQCGLKPSQIGVITPYEGQRAYITSLFQKNISFQNS 1134
Query: 588 AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVC-DSS 646
+ +EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA K+ ++C ++
Sbjct: 1135 SDIEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRRLNVALTRA-KYGLIICGNAK 1193
Query: 647 TICHNTFLAR 656
+ + F++R
Sbjct: 1194 VLSRHHFISR 1203
>gi|448531806|ref|XP_003870332.1| Nam7 protein [Candida orthopsilosis Co 90-125]
gi|380354686|emb|CCG24202.1| Nam7 protein [Candida orthopsilosis]
Length = 1014
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 146/449 (32%), Positives = 221/449 (49%), Gaps = 68/449 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + E++LV AP+N AVD++ KL +GLN+VR
Sbjct: 450 QRPLSLIQGPPGTGKTVTSATIVYHLSRLNKEKILVCAPSNVAVDHLAAKLDSLGLNVVR 509
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R + +V+ +L IV + K +L+K ++ LK++ + +L
Sbjct: 510 LTAKSREDVESSVSHLALHNIVN----------KTAKGELKKLIK--LKNE-----VGEL 552
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
+ K K + + ++L+ VV T GAAD +RL F
Sbjct: 553 SAEDSKKYIKHLRSSELKILNKCDVVCCTCVGAAD---KRLSQFKFRTVLVDESTQASEP 609
Query: 414 ---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
K+ IL GD QL PVIL RKA + G+ SL ER L G + +L QY
Sbjct: 610 EVLIPIVKGAKQVILVGDHQQLGPVILDRKAADAGLKQSLFERLVFL--GHVPIRLEVQY 667
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM+ ++ + S Y GSL T A ++ D+ F P ++DT + + + +
Sbjct: 668 RMHPCLSEFPSNMFYEGSLQDGVTNADRVVADSSF---------PWPVIDTPMMFWA-NY 717
Query: 525 GCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER--- 580
G EE L+ +G S+ N EA V + L G+ P I V +PY Q +L +
Sbjct: 718 GREE---LSSSGNSYLNRVEAMNVERIITRLFKDGIKPEQIGVITPYEGQRAYLVQFMSM 774
Query: 581 ----LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
L+ E VE+ ++D+FQGRE D +I+S VR+N ++GFL D RR+NVA+TRA
Sbjct: 775 NSTLLNKRDEYLEVEITSVDAFQGREKDFIILSCVRANDTQSIGFLSDPRRLNVALTRAK 834
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+ V+ + + N LL H R G
Sbjct: 835 YGLLVLGNPRALSRNRLWNHLLVHFREKG 863
>gi|282859892|ref|ZP_06268980.1| putative DNA helicase [Prevotella bivia JCVIHMP010]
gi|424899896|ref|ZP_18323438.1| hypothetical protein PrebiDRAFT_0585 [Prevotella bivia DSM 20514]
gi|282587295|gb|EFB92512.1| putative DNA helicase [Prevotella bivia JCVIHMP010]
gi|388592096|gb|EIM32335.1| hypothetical protein PrebiDRAFT_0585 [Prevotella bivia DSM 20514]
Length = 637
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 232/456 (50%), Gaps = 52/456 (11%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q+KA+ L K + ++ GPPGTGKT L E I + + +VLV A +N A+D + E
Sbjct: 197 TQEKAVNEVLWAK-DVAVVHGPPGTGKTTTLVEAINETLMRENQVLVCAQSNMAIDWISE 255
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G+N++R+GNP R++ K LG + + + +++ + S LRK +RQ +
Sbjct: 256 KLVDRGINVLRIGNPTRVN----DKMLGFTYERRFEAH-SDYPQLWS-LRKAIRQLRSNR 309
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVK---EVLSSAQVVLATNTGAADPLI--RRLDTFDL 412
G+ + ++L + + + ++ E+ S A+VV T A ++ ++ DT +
Sbjct: 310 K--RGLERFHEKLDRLKSRATELEIRINSELFSEARVVACTLVSANSRIMEGQKFDTLFI 367
Query: 413 ----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
R + AGD CQL P I + A+ G+G +L+ER ++ +
Sbjct: 368 DEAAQALEAACWIPIRRASRVVFAGDHCQLPPTIKNIAAMRAGLGKTLMERIVE-NKPEV 426
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT- 515
T L QYRMN+ I ++S Y G + S+ + ++D P+L LDT
Sbjct: 427 VTLLKVQYRMNEEIMRFSSDWFYHGEVESAPQIRYRSILDY---------DHPMLWLDTS 477
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVH---HVFSLICAGV---SPSAIAVQSP 569
++ G + +E G N+GEAE+ ++ F+ I + V SP
Sbjct: 478 KVDIGDDEVSFKEEFVGESFGRI-NKGEAELTLNSLQEYFTKIGKQRILDESIDVGVISP 536
Query: 570 YVAQVQHLRE----RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Y AQVQ+LR+ R P + V T+D FQG+E D ++ISMVR+N G +GFL D
Sbjct: 537 YRAQVQYLRKLIRKRKFFKPYRHLITVNTVDGFQGQERDVILISMVRANDEGQIGFLKDL 596
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
RRMNVAITRA + ++ ++ T+ + F A+L +I
Sbjct: 597 RRMNVAITRARMKLIILGNAETMTKHPFYAKLYEYI 632
>gi|242774708|ref|XP_002478495.1| nonsense transcript regulator, putative [Talaromyces stipitatus
ATCC 10500]
gi|218722114|gb|EED21532.1| nonsense transcript regulator, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1093
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 140/442 (31%), Positives = 214/442 (48%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 455 QKPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 514
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L K + L + + +L
Sbjct: 515 VTAKSR-----------EDVESPVRFLSLHEQVRMNDSNIELN---KLNQLKSELGELSS 560
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K K+ + +E+L++A V+ T GA DP + +
Sbjct: 561 QDEKKFKQLTRAAEREILTNADVICCTCVGAGDPRLAKFKFRTVLIDESTQSAEPECMIP 620
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 621 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 678
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + ++A L D F P + + P++ +LG EE
Sbjct: 679 LSEFPSNMFYEGSLQNGVSMAQRLRRDVDFPWP--VAENPMMFWS--------NLGNEE- 727
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV PS I + +PY Q ++ + +A G
Sbjct: 728 ISASGT-SYLNRTEAANVEKIVTRFFKAGVQPSDIGIITPYEGQRSYVVSSM----QATG 782
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA V
Sbjct: 783 TFKKEHYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGVV 842
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL H +
Sbjct: 843 ILGNPKVLSKHPLWNYLLLHFK 864
>gi|242011006|ref|XP_002426248.1| regulator of nonsense transcripts, putative [Pediculus humanus
corporis]
gi|212510311|gb|EEB13510.1| regulator of nonsense transcripts, putative [Pediculus humanus
corporis]
Length = 1108
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 214/456 (46%), Gaps = 61/456 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ A Q VLV AP+N AVD
Sbjct: 464 LNRSQVYAVKQAL--QRPLSLIQGPPGTGKTVTSATIVYHLARQPTGAVLVCAPSNIAVD 521
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ GL +VR+ +R E + S ++ + + D DL+
Sbjct: 522 QLTEKIHRTGLKVVRLCAKSR-----------EAIDSPVSFLALHNQIRNMDSNTDLKKL 570
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + +K + KE+L +A V+ T GA DP + RL
Sbjct: 571 QQLKDET-----GELSSSDEKRYRMLKKSSEKEMLEAADVICCTCVGAGDPRLARLKFHS 625
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ ++ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 626 ILIDESMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 684
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
G+ +L QYRM+ ++ + S Y GSL + L F P P+L
Sbjct: 685 -GIRPYRLEVQYRMHPELSRFPSDFFYEGSLQNGVCSEERKLAKVDFPWPA--NDKPMLF 741
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
++ G EE +AG+G S+ N EA V V + AG+ P I + +PY
Sbjct: 742 Y--------VTTGQEE---IAGSGTSYLNRTEASNVEKIVTKFLRAGIKPEQIGLITPYE 790
Query: 572 AQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
Q +L + + +EVA++D+FQGRE D +I+S VRSN L +GFL D R
Sbjct: 791 GQRAYLVQFMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNELLGIGFLNDPR 850
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
R+NVA+TRA + ++ + + LL +
Sbjct: 851 RLNVALTRAKYGIIIIGNPKVLSKQPLWNHLLNFYK 886
>gi|259489087|tpe|CBF89067.1| TPA: hypothetical protein similar to possible regulator of nonsense
transcripts (Broad) [Aspergillus nidulans FGSC A4]
Length = 1077
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 217/442 (49%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 437 QRPLSLIQGPPGTGKTVTSATIIYHLAKLNGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 496
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L +K + L + + +L
Sbjct: 497 VTAKSR-----------EDVESPVGFLSLHEQVRLNDSNIEL---IKLNQLKSELGELSS 542
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 543 QDEKRLKQLTRAAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIP 602
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 603 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 660
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T L + F P +LD+ + + S +LG EE
Sbjct: 661 LSEFPSNMFYEGSLQNGITSFDRLRREVDF---------PWPILDSPMMFWS-NLGNEE- 709
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P I + +PY Q ++ + +A G
Sbjct: 710 ISASGT-SYLNRTEAANVEKIVTRFFKAGVQPKDIGIITPYEGQRSYIVSSM----QATG 764
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 765 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLV 824
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 825 ILGNPKVLSKHPLWNCLLQHFK 846
>gi|67516729|ref|XP_658250.1| hypothetical protein AN0646.2 [Aspergillus nidulans FGSC A4]
gi|40745995|gb|EAA65151.1| hypothetical protein AN0646.2 [Aspergillus nidulans FGSC A4]
Length = 1062
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 217/442 (49%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 422 QRPLSLIQGPPGTGKTVTSATIIYHLAKLNGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 481
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L +K + L + + +L
Sbjct: 482 VTAKSR-----------EDVESPVGFLSLHEQVRLNDSNIEL---IKLNQLKSELGELSS 527
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K LK+ + +E+L++A V+ T GA DP + +L
Sbjct: 528 QDEKRLKQLTRAAEREILNNADVICCTCVGAGDPRLAKLKFRTVLIDESTQSAEPECMIP 587
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 588 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCSPIRLNVQYRMHPC 645
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T L + F P +LD+ + + S +LG EE
Sbjct: 646 LSEFPSNMFYEGSLQNGITSFDRLRREVDF---------PWPILDSPMMFWS-NLGNEE- 694
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P I + +PY Q ++ + +A G
Sbjct: 695 ISASGT-SYLNRTEAANVEKIVTRFFKAGVQPKDIGIITPYEGQRSYIVSSM----QATG 749
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 750 TFKKEHYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLV 809
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL+H +
Sbjct: 810 ILGNPKVLSKHPLWNCLLQHFK 831
>gi|303236249|ref|ZP_07322845.1| putative DNA helicase [Prevotella disiens FB035-09AN]
gi|302483563|gb|EFL46562.1| putative DNA helicase [Prevotella disiens FB035-09AN]
Length = 641
Score = 186 bits (471), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 142/459 (30%), Positives = 229/459 (49%), Gaps = 54/459 (11%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q+KA+ L K + ++ GPPGTGKT L E I + + +VLV A +N AVD + E
Sbjct: 199 TQEKAVNEVLWAK-DVAVVHGPPGTGKTTTLVEAINETLMKESQVLVCAQSNMAVDWICE 257
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G+N++R+GNP R++ K LG + + + ++++ + +RK +RQ
Sbjct: 258 KLVDRGINVLRIGNPTRVN----DKMLGFTYERRFEAH-PDYDQLWA-IRKAIRQLRNGK 311
Query: 358 SLAA-GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-- 412
Q + +L + E ++ A+V+ +T G+ ++ ++ T +
Sbjct: 312 GRGTDSYHQKMDRLKSRATELEIRINSQLFGEARVIASTLVGSNSRIMEGQKFSTLFIDE 371
Query: 413 --------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R I AGD CQL P + S AL+ G+G +L+ER ++ + T
Sbjct: 372 AAQALEAACWIPIRRASRVIFAGDHCQLPPTVKSIAALKAGLGKTLMERIVE-NKPEVVT 430
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRMN+ I ++S Y G + S+ + ++D P+L LDT
Sbjct: 431 LLKVQYRMNEQIMRFSSDWFYHGEVESAPQIKYRGILDY---------DHPMLWLDT--- 478
Query: 519 YGSLSLGCEE---HLDLAG-TGSFYNEGEAEIVV---HHVFSLICAGV---SPSAIAVQS 568
+ +G +E H G + N+GEAE+ + F+ I + V S
Sbjct: 479 -SEIEVGNDEPTFHEQFVGESYGRINKGEAELTLKTLQDYFTKIGKQRILDERIDVGVIS 537
Query: 569 PYVAQVQHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
PY AQVQ+LR + P A + V T+D FQG+E D ++ISMVR+N G +GFL D
Sbjct: 538 PYRAQVQYLRRLIKKREFFKPYRALISVNTVDGFQGQERDVILISMVRANENGEIGFLKD 597
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRY 663
RRMNVAITRA + ++ +++T+ + F RL +I++
Sbjct: 598 LRRMNVAITRARMKLIILGNAATMSQHPFYKRLFEYIQH 636
>gi|256082379|ref|XP_002577434.1| nonsense-mediated mRNA decay protein 1 (rent1) [Schistosoma
mansoni]
gi|238662752|emb|CAZ33672.1| nonsense-mediated mRNA decay protein 1 (rent1),putative
[Schistosoma mansoni]
Length = 1325
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 215/440 (48%), Gaps = 58/440 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ Q ++VLV AP+N AVD + EK+ GL +VR
Sbjct: 462 QRPLSLIQGPPGTGKTVTSASIVYHLNQIHQKKVLVVAPSNTAVDQLCEKIDRTGLKVVR 521
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ AR A+AS V + A+ + ++LRK Q LKD++ +L +
Sbjct: 522 LC--ARSREALASP-----VSRLMLHIQAQNVKGHTELRK--LQQLKDET-----GELSQ 567
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------------- 411
K + ++E +E+L +A VV T A D + RL
Sbjct: 568 DDDKRYRVLKRELERELLMAADVVCCTCVTAGDARLERLSFHSVLIDESTQATEPECLIP 627
Query: 412 -LVG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
+VG ++ +L GD CQL PVI +KA G+ SL ER L G+ +L QYRM+ A
Sbjct: 628 LMVGCRQVVLVGDHCQLGPVITCKKAASAGLTQSLFERFVLL--GIRPIRLQVQYRMHPA 685
Query: 470 IASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
++++ S Y GSL + T +D P+ P P+ T G EE
Sbjct: 686 LSAFPSNVFYEGSLQNGVTAEDRCKKIDFPWPNPDR----PMFFYCTS--------GQEE 733
Query: 529 HLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD----- 582
++G G S+ N EA V V ++ GV P+ I V +PY Q +L L
Sbjct: 734 ---ISGNGVSYLNRTEAATVEKIVTKMLKIGVHPNTIGVITPYEGQRAYLAHYLHYSGSL 790
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+ +E+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA + VV
Sbjct: 791 NAKLYQEIEIASVDAFQGREKDYIILSCVRANENQGIGFLNDPRRLNVALTRARYGLIVV 850
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ +C +LL R
Sbjct: 851 GNPKALCKQPLWNQLLHFYR 870
>gi|428165968|gb|EKX34953.1| hypothetical protein GUITHDRAFT_80206, partial [Guillardia theta
CCMP2712]
Length = 228
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 139/227 (61%), Gaps = 10/227 (4%)
Query: 412 LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
L KR +LAGD CQLAP I+S++A + G+G +L +R H + LT QYRM++ I+
Sbjct: 12 LRSKRLVLAGDDCQLAPTIISKEAADKGLGRTLFQRVREEHGEEVMRMLTVQYRMHEDIS 71
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
W+S MYGG L+ + V L++ P VK T T L+++DT G EE D
Sbjct: 72 DWSSGAMYGGRLVPADGVRRRTLLELPGVKETAETSSVLVVIDTD------GCGMEEEQD 125
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
GS NEGEA +V H+ L+ AGV +I V +PY QV LR+RL + + GVE
Sbjct: 126 --EKGSSRNEGEALVVQEHLERLLAAGVQEESIGVLAPYNGQVAVLRDRLKE--KYRGVE 181
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
+ T+D FQGRE DA+++S+VRSNT VGFL D RR+NVAITRA H
Sbjct: 182 IGTVDGFQGREKDALLLSLVRSNTRREVGFLSDDRRLNVAITRAKSH 228
>gi|452987990|gb|EME87745.1| hypothetical protein MYCFIDRAFT_148374 [Pseudocercospora fijiensis
CIRAD86]
Length = 1091
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 139/440 (31%), Positives = 209/440 (47%), Gaps = 57/440 (12%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL +VR
Sbjct: 465 QKPLSLIQGPPGTGKTVTSATIIYHLSKMNGGQVLVCAPSNVAVDQLCERIHITGLKVVR 524
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC--LKDDSLAAGIRQL 366
V +R E +S + + +D +L + LKD+ +L
Sbjct: 525 VTAKSR-----------EDAESNVGFLSLHRQVSMNDTNVELSKLKQLKDEQ-----GEL 568
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD------------------ 408
Q K K + +E+L +A V+ T GA DP + +
Sbjct: 569 SSQDEKKFKALTRAAEREILQNADVICCTCVGAGDPRLAKFKFRTVLIDESTQSAEPECM 628
Query: 409 -TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 629 IPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVVL--GCAPIRLQVQYRMH 686
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
++ + S Y GSL + T+ L D F P + P++ +LG E
Sbjct: 687 PCLSEFPSNMFYEGSLQNGITMQQRLRKDVDFPWP--VADSPMMFWS--------NLGNE 736
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL--- 584
E + +GT S+ N EA+ V V AGVSPSAI + +PY Q ++ + +
Sbjct: 737 E-ISASGT-SYLNRTEAQNVEKIVTRFFKAGVSPSAIGIITPYEGQRSYVVQSMQQTGTF 794
Query: 585 --PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA ++
Sbjct: 795 KKEHYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGCVIL 854
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + + LL H +
Sbjct: 855 GNPKVLSKHPLWHYLLLHFK 874
>gi|421090780|ref|ZP_15551570.1| AAA domain protein [Leptospira kirschneri str. 200802841]
gi|410000366|gb|EKO50996.1| AAA domain protein [Leptospira kirschneri str. 200802841]
Length = 631
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 143/468 (30%), Positives = 228/468 (48%), Gaps = 70/468 (14%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + ++SQ+ A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTFLNESQRNAVVHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
N+A D +VE +S G++I+R+G+PAR++ +L G+++ ++ V E
Sbjct: 242 NSACDLLVESISARGISILRLGHPARVNEIAIHSTLDYKLFHHPDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
++ +++ + K++ + +K+L KT++ E + ++SS V+++T +
Sbjct: 301 SKQAKKFKRNFGEKEKEER--KNLFMEVKELKKTIRSMEIGLIDSLVSSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGI 440
A ++ TFD L R ILAGD QL P + S K +
Sbjct: 359 ARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK---NSL 414
Query: 441 GVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+L E+AA L L TQYRM + I S+ SKE Y L S + PF
Sbjct: 415 ETTLFEKAAERLESHGRVFLLDTQYRMKEEIVSFPSKEFYSDILKSGRPEKEKIPETFPF 474
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHV 551
L + +D AGT S N EA++ V
Sbjct: 475 ------------------------LNAFQWIDTAGTDSEEVIINDSISNPFEADLQVRLC 510
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE +++ V
Sbjct: 511 FLLKENDWPEEEITILSPYRAQVRLISEKLKDVG-LTKINVSTIDSFQGRENRCILLGFV 569
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
RSN G GFL +SRR+NV +TRA + + DSST+ + FL +L+R
Sbjct: 570 RSNPEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLCKLIR 617
>gi|256082381|ref|XP_002577435.1| nonsense-mediated mRNA decay protein 1 (rent1) [Schistosoma
mansoni]
gi|238662753|emb|CAZ33673.1| nonsense-mediated mRNA decay protein 1 (rent1),putative
[Schistosoma mansoni]
Length = 1301
Score = 185 bits (470), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 215/440 (48%), Gaps = 58/440 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ Q ++VLV AP+N AVD + EK+ GL +VR
Sbjct: 438 QRPLSLIQGPPGTGKTVTSASIVYHLNQIHQKKVLVVAPSNTAVDQLCEKIDRTGLKVVR 497
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ AR A+AS V + A+ + ++LRK Q LKD++ +L +
Sbjct: 498 LC--ARSREALASP-----VSRLMLHIQAQNVKGHTELRK--LQQLKDET-----GELSQ 543
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------------- 411
K + ++E +E+L +A VV T A D + RL
Sbjct: 544 DDDKRYRVLKRELERELLMAADVVCCTCVTAGDARLERLSFHSVLIDESTQATEPECLIP 603
Query: 412 -LVG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
+VG ++ +L GD CQL PVI +KA G+ SL ER L G+ +L QYRM+ A
Sbjct: 604 LMVGCRQVVLVGDHCQLGPVITCKKAASAGLTQSLFERFVLL--GIRPIRLQVQYRMHPA 661
Query: 470 IASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
++++ S Y GSL + T +D P+ P P+ T G EE
Sbjct: 662 LSAFPSNVFYEGSLQNGVTAEDRCKKIDFPWPNPDR----PMFFYCTS--------GQEE 709
Query: 529 HLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD----- 582
++G G S+ N EA V V ++ GV P+ I V +PY Q +L L
Sbjct: 710 ---ISGNGVSYLNRTEAATVEKIVTKMLKIGVHPNTIGVITPYEGQRAYLAHYLHYSGSL 766
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+ +E+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA + VV
Sbjct: 767 NAKLYQEIEIASVDAFQGREKDYIILSCVRANENQGIGFLNDPRRLNVALTRARYGLIVV 826
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ +C +LL R
Sbjct: 827 GNPKALCKQPLWNQLLHFYR 846
>gi|418676776|ref|ZP_13238054.1| AAA domain protein [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418688291|ref|ZP_13249447.1| AAA domain protein [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|418739897|ref|ZP_13296278.1| AAA domain protein [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|400322676|gb|EJO70532.1| AAA domain protein [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410737148|gb|EKQ81890.1| AAA domain protein [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|410753019|gb|EKR09991.1| AAA domain protein [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 631
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 143/468 (30%), Positives = 227/468 (48%), Gaps = 70/468 (14%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISMFLNESQKNAVVHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
N+A D +VE +S G++++R+G+PAR++ +L G+++ ++ V E
Sbjct: 242 NSACDLLVESISARGISVLRLGHPARVNEIAIHSTLDYKLFHHPDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
++ +++ + K+ + +K+L KT++ E + ++SS V+++T +
Sbjct: 301 SKQAKKFKRNFGE--KEREERKNLFMEVKELKKTIRSMEIGLIDSLVSSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGI 440
A ++ TFD L R ILAGD QL P + S K +
Sbjct: 359 ARDILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK---NSL 414
Query: 441 GVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+L E+AA L L TQYRM + I S+ SKE Y L S + PF
Sbjct: 415 ETTLFEKAAERLESHGRVFLLDTQYRMKEEIVSFPSKEFYSDILKSGRPEKEKIPETFPF 474
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHV 551
L + +D AGT S N EA++ V
Sbjct: 475 ------------------------LNAFQWIDTAGTDSEEVIINDSISNPFEADLQVRLC 510
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE +++ V
Sbjct: 511 FLLKENDWPEEEITILSPYRAQVRLISEKLKDVG-LTKINVSTIDSFQGRENRCILLGFV 569
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
RSN G GFL +SRR+NV +TRA + + DSST+ + FL +L+R
Sbjct: 570 RSNPEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLCKLIR 617
>gi|374635637|ref|ZP_09707232.1| DNA helicase [Methanotorris formicicus Mc-S-70]
gi|373561703|gb|EHP87932.1| DNA helicase [Methanotorris formicicus Mc-S-70]
Length = 637
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 192/686 (27%), Positives = 307/686 (44%), Gaps = 141/686 (20%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+ + +L+ ER E++F ++E+ + E+ GRA I NL
Sbjct: 7 YVDKFIKLIEKERKYEMDFHRKEIEKLGDKREDV------------GRA-------ILNL 47
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
LG + + R + RL +S GD+V V S+G S + G V +G
Sbjct: 48 KGRKLREELGSVIVRYGRKKPFKRL---EISVGDVVLV----SKGNPLHSDLFGNVVEIG 100
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
++ I+ D K K VRID + +T++R +AL N + +
Sbjct: 101 KNFIDIAF-------DEEIPKWAYKDVRIDL---YVNDITFKRMKKAL-----NKFREID 145
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
+ ++ ++E+ + EVK+ G K+ ++SQK A+ L + L +
Sbjct: 146 NRLIGIIL---------GIDESRMG--KEVKI-GFFDKSLNESQKNAVINAL-RAMDLYL 192
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV-GLNIVRVGNPAR 314
I GPPGTGKT + E+I + + +VL TA +N A DN++ LS +N+VR+G+P R
Sbjct: 193 IHGPPGTGKTRTITEVIVQECMRKNKVLATADSNIAADNILSNLSKYKNINVVRIGHPTR 252
Query: 315 ISPAVASKSLGEIV------------KSKLASFVAEFERKK------------------S 344
IS + SL +V K + + E ++ K S
Sbjct: 253 ISKNLIEHSLFYMVEKHEKYKAIKKIKEDMIGLMDERDKHKKPTPRWRRGMSDDEIVIFS 312
Query: 345 DLRKDLRQCLKD--DSLAAGIR--QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA 400
L KD+R +D S+A I+ + +K+L + +KK E E +KE + A VV+ATN+ A
Sbjct: 313 KLNKDIRGIPRDILKSMAKWIKTNEKIKKLREKMKKIEDEIIKETIRKADVVVATNSMAG 372
Query: 401 DPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIG 441
+ + FD+ K+ I+AGD QL P +LS + +
Sbjct: 373 CDFLEEFE-FDVCVIDEGSQSMEPSALIPIVKSKKLIMAGDHKQLPPTVLSE---DEELK 428
Query: 442 VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
+L ER + ++ L QYRMN+ I + +K Y L + +V SH + D V+
Sbjct: 429 KTLFERLIKTYPN-FSSILEIQYRMNEKIMKFPNKAFYDNKLKAHKSVESHTIFDLIDVE 487
Query: 502 -----PTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
I + P++ +D + +E D T S+YNE EA++V V
Sbjct: 488 VDEEDKFIINEEPIVFIDVK---------GKEKRDKDST-SYYNEEEAKVVAKLVGIFKK 537
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
+ S I +PY AQV+ + D EV T+D FQG+E + +IIS VR+
Sbjct: 538 YNIPVSVI---TPYDAQVKLISNLCDG-------EVNTVDGFQGKEDEVIIISFVRTKKF 587
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVV 642
GFL D RR+NVAITRA + + +V
Sbjct: 588 ---GFLEDLRRLNVAITRAKRKLIIV 610
>gi|320580629|gb|EFW94851.1| ATP-dependent helicase NAM7 [Ogataea parapolymorpha DL-1]
Length = 909
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 226/462 (48%), Gaps = 67/462 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ+ AI L+K PL +IQGPPGTGKT I+ + + ++LV AP+N AVD
Sbjct: 367 LNASQENAIHNVLSK--PLSLIQGPPGTGKTVTSATIVYQLTKLHKGQILVCAPSNIAVD 424
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL +GL ++R+ +R + +V SL E ++ K AS DL++ L
Sbjct: 425 HLASKLEQLGLRVLRLIAKSREDVESSVQHLSLTEQMR-KHAS---------KDLKRLLA 474
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL--DT 409
K+ L+A KQ+ L K+E ++ QV+ T GA D RRL
Sbjct: 475 LKEKNGELSAS---QYKQMASLLYKEEAL----LMDKCQVICCTCVGAGD---RRLAKRK 524
Query: 410 FDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAA 449
F V + IL GD QL PVILSRKA + G+ SL ER
Sbjct: 525 FRTVLIDESTQASEPECLIPIVKGANQVILVGDHQQLGPVILSRKAGDAGLRQSLFERLI 584
Query: 450 TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCP 509
L G + +L QYRM+ ++ ++S Y GSL + T S D+ F P I + P
Sbjct: 585 YL--GHMPIRLEVQYRMHPCLSEFSSNVFYDGSLQNGVTAESRSRPDSTFPWP--IREIP 640
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
++ +G E L +GT S+ N EA + L+ GV P I V +P
Sbjct: 641 MMFWAV---FG------REELSASGT-SYLNRTEAMNCEKIITRLLKEGVDPGKIGVITP 690
Query: 570 YVAQVQHLRERLD------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
Y Q + + ++ D + VEVA++DSFQGRE D +I+S VR+N +GFL
Sbjct: 691 YAGQATFIVQYMEMNGLIADKSRYSEVEVASVDSFQGREKDYIILSCVRANDNQLIGFLS 750
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
D RR+NVA+TRA +A++ + T+ N RLL H R G
Sbjct: 751 DPRRLNVALTRARFGMAILGNPKTLSKNPMWNRLLMHFREKG 792
>gi|145350386|ref|XP_001419588.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579820|gb|ABO97881.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 797
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 143/461 (31%), Positives = 223/461 (48%), Gaps = 63/461 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L +RPL ++QGPPGTGKT ++ ++G +V+V AP+N AVD
Sbjct: 355 LNQSQHDAVKTVL--QRPLSLVQGPPGTGKTVTSATLVYHLAKRGNGQVIVCAPSNVAVD 412
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ EK+ GL +VR+ + +R + +V +L V + S F+ K L+ +L
Sbjct: 413 HLAEKIEKTGLKVVRISSRSREHLVSSVEHLTLHYQVANIGGSTHKAFQ-KLQQLKNELG 471
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ L+AG K + +K+ +E+L +A V+ T GA DP + F
Sbjct: 472 E------LSAGDE-------KKYRNAQKKLEREILENADVICTTAVGAGDPRLANF-RFR 517
Query: 412 LV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
+V K+ ++ GD QL PV+ ++A G+ SL ER L
Sbjct: 518 MVLIDESTQATEPECLIPIVMGAKQVVMVGDHKQLGPVVTCKQAYAAGLAQSLFERLIAL 577
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCP 509
G+ +L QYRM+ ++ + S Y G+L + + L +D P+ P+ P
Sbjct: 578 --GIQPIRLQIQYRMHPCLSEFPSNTFYDGTLQNGVSAIERTLSHIDFPWPVPS----KP 631
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
++ S +E + +GT SF N EA V V L+ AGVSP I V +P
Sbjct: 632 MMFW---------SQTGQEEMSASGT-SFLNRAEASAVEKCVTHLLNAGVSPEQIGVVTP 681
Query: 570 YVAQ----VQHLRERLDDLPE-AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
Y Q VQH+ P+ ++VA++DSFQG+E D +I++ VRSN +GFL D
Sbjct: 682 YEGQRAYVVQHMTRVGVLHPQLYKDIQVASVDSFQGKEKDFIIMTCVRSNEKSGIGFLSD 741
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NVAITRA + V+ + + +L H R G
Sbjct: 742 PRRLNVAITRARSGLIVIGNPKVLNKQHLFHEMLTHFRENG 782
>gi|241955273|ref|XP_002420357.1| ATP-dependent RNA helicase, putative; atp-dependent helicase, SFI
superfamily, putative [Candida dubliniensis CD36]
gi|223643699|emb|CAX41433.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 1016
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 146/461 (31%), Positives = 226/461 (49%), Gaps = 70/461 (15%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT II + +++LV AP+N AVD++
Sbjct: 446 SQTNAVRTVL--QRPLSLIQGPPGTGKTVTSATIIYHLSKLNKQKILVCAPSNVAVDHLA 503
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
KL +GL +VR+ +R + +V+ +L +V + K +L+K ++
Sbjct: 504 AKLDLLGLKVVRLTAKSREDVESSVSHLALHNLVNNN----------AKGELKKLIKLKN 553
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
+ L+ G +L ++ + K +L+ ++VV T GAAD RRL F
Sbjct: 554 QVGELSVGDTNNYLKLSRSSELK-------ILNKSEVVCCTCVGAAD---RRLSQFKFKT 603
Query: 414 ---------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
K+ IL GD QL PVIL +KA + G+ SL ER L
Sbjct: 604 VLIDESTQASEPEVLIPIVKGAKQVILVGDHQQLGPVILDKKAADAGLKQSLFERLVFL- 662
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
G + +L QYRM+ ++ + S Y GSL + T L+ ++ F P +
Sbjct: 663 -GHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVTSDDRLIEESTF---------PWPV 712
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+DT + + + + G EE L+ +G S+ N EA V + L G+ P I V +PY
Sbjct: 713 IDTPMMFWA-NYGREE---LSASGNSYLNRVEAMNVEKIITKLFKDGIKPEQIGVITPYE 768
Query: 572 AQVQHLRER-------LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
Q +L + LD + VE+ ++D+FQGRE D +I+S VR+N ++GFL D
Sbjct: 769 GQRAYLVQFMSVNSTLLDKRDQYLNVEITSVDAFQGREKDFIILSCVRANDSQSIGFLSD 828
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NVA+TRA + ++ + ++C N LL H R G
Sbjct: 829 PRRLNVALTRAKYGLVILGNPRSLCRNRLWNHLLIHFREKG 869
>gi|281210252|gb|EFA84419.1| helicase [Polysphondylium pallidum PN500]
Length = 1113
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 136/451 (30%), Positives = 215/451 (47%), Gaps = 74/451 (16%)
Query: 250 KRPLLIIQGPPGTGKT----GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN 305
K PL +IQGPPGTGKT ++ I+ A+++ E+VLV AP+N A+D + KL +GL
Sbjct: 531 KSPLSLIQGPPGTGKTVVSSFIVHHIVKHAIKKNEKVLVCAPSNVAIDQLTGKLHSIGLK 590
Query: 306 IVRVGNPAR--ISPAVASKSLGEIV-------KSKLASFVAEFERKKSDLRKDLRQCLKD 356
+VR+ + R ++ V +L V + +LA F + + ++ +L + D
Sbjct: 591 VVRLCSKLREEVASPVEHLTLHHQVWQLDSHGRGELAKF-KQLKDEQGELSTN------D 643
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--- 413
D ++ + ++L A V+ T GA DP + +L F V
Sbjct: 644 DHRYFALK--------------RHAESKILKEADVIATTCVGAGDPRLSKL-KFPYVLID 688
Query: 414 -----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
K+ +L GD CQL PV+L++K +E G+ SL ER L G
Sbjct: 689 ESTQASEPECLIPLMLGAKQVVLVGDHCQLGPVLLAKKVIEAGLSQSLFERLINL--GHH 746
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR 516
+LTTQYRM+ +++ + S Y G L++ + + D F P+ P+ +
Sbjct: 747 PFRLTTQYRMHPSLSEFPSSTFYEGQLVNELSYKDRVYNDIKFPWPS--PNNPMFFYN-- 802
Query: 517 LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH 576
S G EE + +GT SF N EA V L+ G P I + +PY Q
Sbjct: 803 ------STGAEE-ISSSGT-SFINRMEASTTEKIVTKLLELGTKPHQIGIITPYEGQRSF 854
Query: 577 LRERLDDLPEAA-----GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
L + + + +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA
Sbjct: 855 LVNNMQKTGKLSIELYREIEVASVDSFQGREKDFIILSCVRSNDNQGIGFLHDPRRLNVA 914
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+TRA + ++ ++ + + L+ H +
Sbjct: 915 LTRARYGLIILGNARVLSRDQLWNNLICHFK 945
>gi|344301641|gb|EGW31946.1| ATP-dependent helicase NAM7 [Spathaspora passalidarum NRRL Y-27907]
Length = 1000
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 153/461 (33%), Positives = 222/461 (48%), Gaps = 70/461 (15%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT II + E++LV AP+N AVD++
Sbjct: 444 SQTNAVRTVL--QRPLSLIQGPPGTGKTVTSATIIYHLSKLNKEKILVCAPSNVAVDHLA 501
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
EKL +GL +VR+ +R + +V+ +L +V EF +K L+ ++ +
Sbjct: 502 EKLDLLGLKVVRLTAKSREDVDSSVSHLALHNLVNKGAK---GEF-KKLIKLKNEVGELS 557
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
+DS R + L + K +L +V T GAAD +RL F
Sbjct: 558 VEDS-----RIYFRNLRNSESK--------LLDKCDIVCCTCVGAAD---KRLSQFKFRT 601
Query: 414 ---------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
K+ IL GD QL PVIL RKA + G+ SL ER L
Sbjct: 602 VLIDESTQASEPEVLIPIVKGAKQVILVGDHQQLGPVILDRKAADAGLKQSLFERLVFL- 660
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
G + +L QYRM+ ++ + S Y GSL + T L+ D F P +
Sbjct: 661 -GHVPIRLEVQYRMHPCLSDFPSNMFYEGSLQNGVTSDDRLIEDATF---------PWPM 710
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+DT + + + + G EE L+ +G SF N EA V + L GV+P I V +PY
Sbjct: 711 VDTPMMFWA-NYGREE---LSSSGNSFLNRVEAMNVEKIITRLFKDGVTPDQIGVITPYE 766
Query: 572 AQVQHLRER-------LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
Q +L + LD + VE+ ++D+FQGRE D +I+S VR+N ++GFL D
Sbjct: 767 GQRAYLVQFMSMNSTLLDKRDQYLDVEITSVDAFQGREKDFIILSCVRANDAQSIGFLSD 826
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NVA+TRA + V+ + +C N LL H R G
Sbjct: 827 PRRLNVALTRAKYGLIVLGNPRALCRNRLWNCLLVHFREKG 867
>gi|398339204|ref|ZP_10523907.1| DNA and RNA helicase [Leptospira kirschneri serovar Bim str. 1051]
Length = 631
Score = 185 bits (469), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 143/468 (30%), Positives = 227/468 (48%), Gaps = 70/468 (14%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISMFLNESQKNAVVHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
N+A D +VE +S G++++R+G+PAR++ +L G+++ ++ V E
Sbjct: 242 NSACDLLVESISARGISVLRLGHPARVNEIAIHSTLDYKLFHHPDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
++ +++ + K+ + +K+L KT++ E + ++SS V+++T +
Sbjct: 301 SKQAKKFKRNFGE--KEREERKNLFMEVKELKKTIRSMEIGLIDSLVSSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGI 440
A ++ TFD L R ILAGD QL P + S K +
Sbjct: 359 ARDILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK---NSL 414
Query: 441 GVSLLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+L E+AA L L TQYRM + I S+ SKE Y L S + PF
Sbjct: 415 ETTLFEKAAERLESHGRVFLLDTQYRMKEEIVSFPSKEFYSDILKSGRPEKEKIPETFPF 474
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT--------GSFYNEGEAEIVVHHV 551
L + +D AGT S N EA++ V
Sbjct: 475 ------------------------LNAFQWIDTAGTDSEEVIINDSISNPFEADLQVRLC 510
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE +++ V
Sbjct: 511 FLLKENDWPEEEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRCILLGFV 569
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
RSN G GFL +SRR+NV +TRA + + DSST+ + FL +L+R
Sbjct: 570 RSNPEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLCKLIR 617
>gi|403215170|emb|CCK69670.1| hypothetical protein KNAG_0C05720 [Kazachstania naganishii CBS
8797]
Length = 1000
Score = 185 bits (469), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 154/456 (33%), Positives = 223/456 (48%), Gaps = 63/456 (13%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD++
Sbjct: 441 SQSNAVKHVL--ERPLSLIQGPPGTGKTVTSATIVYHLAKIHKDRILVCAPSNVAVDHLA 498
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKD 356
KL D+GL +VR+ +R S+ ++ L + ++ E KK KD L
Sbjct: 499 SKLRDLGLKVVRLTAKSRED---VESSVSDLALHNLVAKSSQGELKKLLKLKDEVGELS- 554
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-FDLV-- 413
A G R+ +K +KK E E +L+ A VV T GA D +RLDT F V
Sbjct: 555 ---AVGTRRFVK----LVKKAELE----ILAKADVVCCTCVGAGD---KRLDTRFRTVLI 600
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
K+ IL GD QL PVIL RKA + G+ SL ER +L G
Sbjct: 601 DESTQATEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL--GH 658
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
+ +L QYRMN ++ + S Y G+L + T+ ++++ F P I P++
Sbjct: 659 VPIRLEVQYRMNPHLSEFPSNMFYEGTLQNGVTIEQRTVLNSTFPWP--IHGVPMMFW-- 714
Query: 516 RLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+ G EE ++G G S+ N EA + L GV P I V +PY Q
Sbjct: 715 ------ANYGREE---ISGNGTSYLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQR 765
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D RR+N
Sbjct: 766 AYVLQYMQMNGAMDKSLYLKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLN 825
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
V +TRA + ++ + ++ N LL H R G
Sbjct: 826 VGLTRAKYGLVILGNPRSLSRNLLWNHLLVHFREKG 861
>gi|321473861|gb|EFX84827.1| hypothetical protein DAPPUDRAFT_46313 [Daphnia pulex]
Length = 516
Score = 185 bits (469), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 168/527 (31%), Positives = 256/527 (48%), Gaps = 82/527 (15%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+++F + LL +ERDAE+ ++S + E + + + +C I
Sbjct: 6 IEDFVIQQLGLLNLERDAEI----------------AESRRLQENISAKQLQEKGVC--I 47
Query: 73 CNLFVVSTSTGLGGMHLVLFRVE-GNHRLPPTTLSPGDMVCVRVCDSRGACATSCI-QGF 130
NL V +GL G ++ F + LP + LS GD+V + S I G
Sbjct: 48 LNLVVQGIRSGLYGRTIITFGCKLAGKELPSSNLSSGDIVGIFPNSSASQLEKDQICSGI 107
Query: 131 VHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNG 190
V L I++ + + D + + ++ LA+++TY R L L+
Sbjct: 108 VSCLKSSTIEIALDTDCDNVDLNDNDCY-------KLLQLANSVTYRRLKVGLNSLK--- 157
Query: 191 LHKRNPSIAAVVTLFGDK---------EDVTWLEENDLADWSEVKLDGIMGKTFDDSQKK 241
+ + P+ + + TLFG + V +NDL W K D SQK+
Sbjct: 158 -NYQGPAASLINTLFGGQLFSSASLSLPPVLLGYDNDLV-W--------FNKNLDHSQKE 207
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL-S 300
A+ L K+R + ++ GPPGTGKT + EII + V+ G RVL AP+N AVDNM+EKL +
Sbjct: 208 AVEFAL-KQREVAVVHGPPGTGKTTTVVEIILQTVKAGGRVLACAPSNVAVDNMLEKLVA 266
Query: 301 DVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
+ + +R+G+P R+ A+ ++SL ++ S+ S V + R DL L+Q K
Sbjct: 267 NSSVKAIRLGHPTRMQEAIQNRSLDAVLSNSEARSIVNDVRR---DLDAQLKQITKTKKR 323
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD--PLIRRL--DTFDLV-- 413
I +K L K L+++E + VKEVLS A V+L T T A PL + L D FD V
Sbjct: 324 GP-IFSEIKNLRKELRERETKAVKEVLSHANVILTTLTSATQEGPL-KHLPPDHFDYVVI 381
Query: 414 -----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE-GV 455
R +LAGD QL P I+S +A G+G++L+ER E G
Sbjct: 382 DECSQSTESACWLALTRAPRVLLAGDHFQLPPTIISPEAERKGLGLTLMERIINRKEDGN 441
Query: 456 LATK-LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
L + LTTQYRM+ I WAS ++Y G L + +VASHLL++ P V+
Sbjct: 442 LCVRMLTTQYRMHRDIMQWASNQLYHGKLEAHPSVASHLLLELPGVE 488
>gi|418700935|ref|ZP_13261873.1| AAA domain protein [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410760030|gb|EKR26230.1| AAA domain protein [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 634
Score = 185 bits (469), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 148/474 (31%), Positives = 232/474 (48%), Gaps = 79/474 (16%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISP-AVAS------------KSLGEIVKS--KLA 333
N+A D +VE +S G+ ++R+G+PARI+ A+ S K L E K +++
Sbjct: 242 NSACDLLVESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLLNEYRKDVIEIS 301
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+F+R + ++ R+ L + +K+L KT++ E + ++SS V++
Sbjct: 302 KQAKKFKRNFGEKEREERKKLFTE---------VKELKKTIRSMEIGLIDSLVSSHPVIV 352
Query: 394 ATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRK 434
+T +A ++ TFD L R ILAGD QL P + S K
Sbjct: 353 STPVASARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK 411
Query: 435 ALEGGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
+ +L E+AA L L TQYRM D I+++ SKE Y G L S +
Sbjct: 412 ---NYLETTLFEKAAENLESYGRVFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKER- 467
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS--------FYNEGEAE 545
+ P L + +D +GT S N EA+
Sbjct: 468 --------------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDSISNPFEAD 507
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+ V F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE
Sbjct: 508 LQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRC 566
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+++ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 567 ILLGFVRSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|149237651|ref|XP_001524702.1| ATP-dependent helicase NAM7 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451299|gb|EDK45555.1| ATP-dependent helicase NAM7 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 977
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 147/447 (32%), Positives = 216/447 (48%), Gaps = 64/447 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + E++LV AP+N AVD++ KL +GL +VR
Sbjct: 422 QRPLSLIQGPPGTGKTVTSATIIYHLSRSNKEKILVCAPSNVAVDHLAAKLDTLGLKVVR 481
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ +R S+G + + S A+ E KK K+ + +L
Sbjct: 482 LTAKSRED---VESSVGHLALHNIVSKTAKGELKKLLKLKN------------EVGELSM 526
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--------------- 413
+ K+ + + + ++LS A VV T GAAD +RL F
Sbjct: 527 EDSKSFIRNLRTSELKILSKADVVCCTCVGAAD---KRLAQFKFRTVLIDESTQASEPEV 583
Query: 414 -------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
K+ IL GD QL PVIL RKA + G+ SL ER L G + +L QYRM
Sbjct: 584 LIPIVKGAKQVILVGDHQQLGPVILDRKAADAGLKQSLFERLVFL--GHVPIRLEVQYRM 641
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
+ ++ + S Y GSL + T L+ + F P +LDT + + + + G
Sbjct: 642 HPCLSEFPSNMFYEGSLQNGVTSKDRLVEEAMF---------PWPVLDTPMMFWA-NYGR 691
Query: 527 EEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER----- 580
EE L+G+G S+ N EA V + L G+ P I V +PY Q +L +
Sbjct: 692 EE---LSGSGNSYLNRVEAMNVERIITRLFKDGIKPEQIGVITPYEGQRAYLVQFMSINS 748
Query: 581 --LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
LD + VE+ ++D+FQGRE D +I+S VR+N ++GFL D RR+NVA+TRA
Sbjct: 749 TILDKRDQYLEVEITSVDAFQGREKDFIILSCVRANDSQSIGFLSDPRRLNVALTRAKYG 808
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFG 665
+ ++ + +C N LL H R G
Sbjct: 809 LLILGNPRALCRNKLWNHLLIHFREKG 835
>gi|328768162|gb|EGF78209.1| hypothetical protein BATDEDRAFT_35814 [Batrachochytrium
dendrobatidis JAM81]
Length = 1119
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 168/559 (30%), Positives = 250/559 (44%), Gaps = 95/559 (16%)
Query: 143 VALESRHGD-------PTFSKLF-GKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKR 194
V++E +H D F+ F KS DR+Q T + N + + + H
Sbjct: 403 VSMELKHDDRAPVECTHNFTVDFVWKSTSFDRMQNAMKTFALDENSVSAYIYHRLLGHDV 462
Query: 195 NPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLL 254
+P + V +++ + SQ A+ L+K PL
Sbjct: 463 DPQVLKVTL--------------------PKRINAPNLPELNHSQATAVKSVLSK--PLS 500
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPA 313
+IQGPPGTGKT I+ + +VLV AP+N AVD++ K+ GL +VRV +
Sbjct: 501 LIQGPPGTGKTVTSATIVYHLANMNKGQVLVCAPSNVAVDHLTSKIHKTGLKVVRVTAKS 560
Query: 314 R--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLG 371
R + +V+ SL E VK +L D RQ K L + +L Q
Sbjct: 561 REALESSVSFLSLSEQVK---------------NLDTD-RQLQKLIRLKNELGELSSQDE 604
Query: 372 KTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD-------------------- 411
K K ++ +E+L A V+ T GA D RL F
Sbjct: 605 KKYKYLFRKAEREILEHADVICTTCMGAGD---SRLSKFSFRSVLVDEATQACEPECLIP 661
Query: 412 --LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PV+ +KA + G+ SL ER L G+ +L QYRM+
Sbjct: 662 LVLGSKQVVLVGDHQQLGPVVQHKKASKAGLSQSLFERLIIL--GLRPIRLQVQYRMHPC 719
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + TV + + F P + + P++ YG S G EE
Sbjct: 720 LSEFPSNMFYEGSLQNGVTVQERIRPEIDFPWP--VHETPMIF------YG--SFGQEE- 768
Query: 530 LDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQHLRERLDDL 584
+A +G S+ N EA V V + AGV+P+ I + +PY Q VQH++
Sbjct: 769 --IAASGKSYLNRTEAAYVEKVVTKFLKAGVTPAQIGIVTPYEGQRAYVVQHMQFNGSLK 826
Query: 585 PE-AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVC 643
E +EVA++DSFQGRE D +I++ VRSN +GFL D RR+NVA+TRA + +V
Sbjct: 827 KELYKEIEVASVDSFQGREKDYIIVTCVRSNENQGIGFLVDPRRLNVALTRAKYGLVIVG 886
Query: 644 DSSTICHNTFLARLLRHIR 662
+ + + +LL R
Sbjct: 887 NPKVLAKHPLWYQLLMTFR 905
>gi|319903097|ref|YP_004162825.1| helicase [Bacteroides helcogenes P 36-108]
gi|319418128|gb|ADV45239.1| putative helicase [Bacteroides helcogenes P 36-108]
Length = 651
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 154/513 (30%), Positives = 243/513 (47%), Gaps = 69/513 (13%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGK----------TFDDSQKKAIALGLNK--- 249
T+F ED + N LA+ + LD K + +Q+ A+ NK
Sbjct: 148 TMFEALEDTLRAKGNRLAELRDTLLDTSKAKFRELYPVRFPWLNATQESAV----NKVLC 203
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
R + I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL D G+N++R+
Sbjct: 204 TRDVAIVHGPPGTGKTTTLVEAIYETLHREPQVMVCAQSNTAVDWISEKLVDRGVNVLRI 263
Query: 310 GNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK---DLRQCLKDDSLAAGIRQL 366
GNP R++ + S + +S S E + +LR+ R+ D+ G+R
Sbjct: 264 GNPTRVNDKMLSFTYERRFESH--SLYTELWSIRQELRQLQGKTRRGSYDER--EGVRSR 319
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------------ 412
+ +L E + E+ SA V+ +T G+ L+ R T +
Sbjct: 320 ISRLRDRATALELQINAELFDSAHVIASTLVGSNHRLLSGHRFGTLFIDEAAQALEAACW 379
Query: 413 ----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
R ILAGD CQL P + +A GG+ +L+E A ++ L QYRM++
Sbjct: 380 IAIRKADRVILAGDHCQLPPTVKCPEAARGGLERTLMETVAAAKPTAVSL-LKMQYRMHE 438
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
I ++S+ Y G L ++ V ++D W T P+ +DT + +E
Sbjct: 439 DIMRFSSEWFYNGELKAAPEVRHRGILD-------WDT--PICWIDTS------EMNFKE 483
Query: 529 HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ------SPYVAQVQHLRERLD 582
+ T N+ EA +++ + + I + Q SPY AQVQHLR ++
Sbjct: 484 EF-VGETFGRINKEEANLLLQELEAYILRIGGKRILEEQIDFGLISPYKAQVQHLRNKIK 542
Query: 583 D----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITRA
Sbjct: 543 TSAALRPYRSLLTVNTVDGFQGQERDVIFISLVRANEDGQIGFLHDLRRMNVAITRARMK 602
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
+ ++ ++ T+ + F +L+ +I+ G VK AE
Sbjct: 603 LVILGEADTLNRHAFYKKLMEYIKEQGGVKRAE 635
>gi|296816783|ref|XP_002848728.1| ATP-dependent helicase NAM7 [Arthroderma otae CBS 113480]
gi|238839181|gb|EEQ28843.1| ATP-dependent helicase NAM7 [Arthroderma otae CBS 113480]
Length = 1088
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 216/453 (47%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + +VLV AP+N AVD
Sbjct: 434 LNSSQINAVKAVLQK--PLSLIQGPPGTGKTVTSATIIYHLAKVNAGQVLVCAPSNVAVD 491
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E + GL VRV +R E V+S + + + +D +L
Sbjct: 492 QLCECIHRTGLKTVRVTAKSR-----------EDVESPVRHLSLHEQVRNNDSNIEL--- 537
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR------- 406
+K + L A + +L Q K K+ + KE+L++A V+ T GA DP + +
Sbjct: 538 VKLNQLKAELGELSSQDEKKYKQLTRAAEKEILTNADVICCTCVGAGDPRLAKSKFRTVL 597
Query: 407 ------------LDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
+ L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 598 IDESTQSAEPECMIPLVLGCKQAVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 655
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ ++S Y GSL + + LL + F P + P++
Sbjct: 656 CAPIRLNVQYRMHPCLSQFSSNMFYEGSLQNGVSSEDRLLKNVDFPWP--VADKPMMFWS 713
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS I + +PY Q
Sbjct: 714 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSGIGIITPYEGQR 763
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + +EVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 764 SYVVSSMQLTGTFKKESYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLN 823
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LLRH +
Sbjct: 824 VALTRAKYGLVILGNPKVLSKHPLWNYLLRHFK 856
>gi|440632949|gb|ELR02868.1| regulator-nonsense transcripts 1 [Geomyces destructans 20631-21]
Length = 1099
Score = 184 bits (467), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 212/438 (48%), Gaps = 53/438 (12%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT +I + G +VLV AP+N AVD + E++ GL +VR
Sbjct: 464 QKPLSLIQGPPGTGKTVTSATVIYHLSKVNGGQVLVCAPSNVAVDQLCERIHRTGLKVVR 523
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ +R E V+S + + + +D +L K L + + +L
Sbjct: 524 LTAKSR-----------EDVESSVGFLSLHEQVRMNDSNLEL---TKLSQLKSELGELSS 569
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K K + +E+L++A V+ T GA DP + ++
Sbjct: 570 QDEKKFKSLTRAAEREILNNADVICCTCVGAGDPRLSKMKFRTVLIDESTQSAEPECMIP 629
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G+ +L QYRM+
Sbjct: 630 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GLAPIRLNVQYRMHPC 687
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T+ L D F P + P++ +LG EE
Sbjct: 688 LSEFPSNMFYEGSLQNGVTMQQRLRRDVDFPWP--VGDTPMMFWS--------NLGNEE- 736
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL----- 584
+ +GT S+ N EA V V AGV P+ I V +PY Q ++ + +
Sbjct: 737 ISASGT-SYLNRTEASNVEKIVTRFFKAGVQPADIGVITPYEGQRSYVVSSMQNTGTFKK 795
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
+EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ +
Sbjct: 796 ENYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVILGN 855
Query: 645 SSTICHNTFLARLLRHIR 662
+ + LL+H +
Sbjct: 856 PKVLSKHPLWHYLLQHFK 873
>gi|329957754|ref|ZP_08298229.1| putative DNA helicase [Bacteroides clarus YIT 12056]
gi|328522631|gb|EGF49740.1| putative DNA helicase [Bacteroides clarus YIT 12056]
Length = 632
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 159/517 (30%), Positives = 242/517 (46%), Gaps = 95/517 (18%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMG----------KTFDDSQKKAIALGLNK--- 249
T+F EDV + N LA+ ++ L + + +Q+ A+ NK
Sbjct: 148 TMFEALEDVLRAKGNRLAELRDILLGTVRAGFRELYPVRFPWLNSTQETAV----NKVLC 203
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
R I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+
Sbjct: 204 ARDTAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNMAVDWISEKLVDRGVNVLRI 263
Query: 310 GNPARISPAVASKSLGEIVKSKLASFVAEFERKKSD---------LRKDLRQC---LKDD 357
GNP R V K+ SF +ER+ + +RK+LRQ +
Sbjct: 264 GNPTR-------------VNDKMLSFT--YERRFENHPLYPELWSIRKELRQLGGKARHG 308
Query: 358 SL--AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL- 412
S GIR + +L E + E+ SA V+ +T + L+ RR T +
Sbjct: 309 SYDEREGIRSRMSRLRDRATTLEIQINAELFDSAHVIASTLVSSNHRLLNGRRFGTLFID 368
Query: 413 ---------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
R +LAGD CQL P I +A G+ +L+E+ V++
Sbjct: 369 EAAQALEAACWIAIRKADRVVLAGDHCQLPPTIKCYEAARSGLEQTLMEKVVANKPSVVS 428
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDT 515
L QYRM++ I ++S Y G+L ++ + L DTP TW+ + D
Sbjct: 429 L-LKVQYRMHEDIMRFSSDWFYDGALEAAPEIRHRGILDWDTPI---TWLDTSEM---DF 481
Query: 516 RLPYGSLSLGC----EEHLDLAGTGSFYNE-GEAEIVVHHV-FSLICAGVSPSAIAVQSP 569
+ + + G E HL L ++ G + I+ + F LI SP
Sbjct: 482 KEEFVGETFGRINKEEAHLLLKELEAYIQRIGGSRILEERIDFGLI------------SP 529
Query: 570 YVAQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Y AQVQ+LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D
Sbjct: 530 YKAQVQYLRGKIKSSASLRPYRSLITVNTVDGFQGQERDVIFISLVRANEEGQIGFLNDL 589
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RRMNVAITRA + ++ +++T+ H+TF RLL ++R
Sbjct: 590 RRMNVAITRARMKLVILGEATTLSHHTFYKRLLEYVR 626
>gi|47087327|ref|NP_998639.1| regulator of nonsense transcripts 1 [Danio rerio]
gi|28278858|gb|AAH45353.1| Upf1 regulator of nonsense transcripts homolog (yeast) [Danio
rerio]
gi|240248221|emb|CAX18770.1| UPF1 regulator of nonsense transcripts homolog (yeast) [Danio
rerio]
Length = 1100
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 464 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 523
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 524 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSSDE 572
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 573 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 625
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 626 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 683
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A L F P P+ T+
Sbjct: 684 MHPALSAFPSNIFYEGSLQNGVTAADRLKKGFDFQWPQ--PDKPMFFYVTQ--------- 732
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 733 GQEEIASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 787
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 788 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 847
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 848 YGVIIVGNPKALSKQPLWNHLLNYYK 873
>gi|328865229|gb|EGG13615.1| helicase [Dictyostelium fasciculatum]
Length = 1162
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 144/444 (32%), Positives = 218/444 (49%), Gaps = 61/444 (13%)
Query: 250 KRPLLIIQGPPGTGKT----GLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN 305
K PL +IQGPPGTGKT L+ ++ ++ E++LV AP+N A+D + KL VGL
Sbjct: 559 KSPLSLIQGPPGTGKTLVSAFLVHHLVNHGIKGKEKLLVCAPSNVAIDQLAGKLHSVGLK 618
Query: 306 IVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGI 363
+VR+ + R +S V + +L V ++L + RK LR++ + +D
Sbjct: 619 VVRLCSKLREEVSSPVENLTLHHQV-AQLDQYGKGVLRKFKALREETGELNPEDE----- 672
Query: 364 RQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------- 413
R+ L G E+ +KE A V+ T GA DP +R + F V
Sbjct: 673 RKFLVLKGSL----ERNILKE----ADVICTTCVGAGDPRLRDI-KFPYVLIDEATQASE 723
Query: 414 ----------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQ 463
++ +L GD CQL PV+L +K E G+ +SL ER +H G +LTTQ
Sbjct: 724 PECLIPLVLGARQVVLVGDHCQLGPVLLCKKVQEAGLSLSLFER--LIHLGHHPFRLTTQ 781
Query: 464 YRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
YRM+ A++ + S Y G L++ + + + FV P P+ + S
Sbjct: 782 YRMHPALSEFPSNTFYEGQLVNEISYRDRV-TNNGFVWPH--PNRPMFFHN--------S 830
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL---RER 580
G EE + +GT SF N EA + V + G PS I + +PY Q L +R
Sbjct: 831 TGHEE-ISSSGT-SFINRTEATLCEKIVTRFLELGTKPSQIGIITPYEGQRSFLVNNMQR 888
Query: 581 LDDLPE--AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
LP +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NVA+TRA
Sbjct: 889 TGRLPSDLYKEIEVASVDSFQGREKDFIILSCVRSNENQGIGFLQDPRRLNVALTRARYG 948
Query: 639 VAVVCDSSTICHNTFLARLLRHIR 662
+ ++ ++ + + L+ H +
Sbjct: 949 LIILGNARVLSRDLLWNNLISHFK 972
>gi|195446723|ref|XP_002070897.1| GK25498 [Drosophila willistoni]
gi|194166982|gb|EDW81883.1| GK25498 [Drosophila willistoni]
Length = 1208
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 219/455 (48%), Gaps = 60/455 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD
Sbjct: 457 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVD 514
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ L +VRV A+ A+ S + +++++ A E KK Q
Sbjct: 515 QLTEKIHRTNLKVVRVC--AKSREAIDSPVSFLALHNQISNIKANTELKK-------LQQ 565
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
LKD++ +L K + ++ T ++L +A V+ T GA D + R+ ++
Sbjct: 566 LKDET-----GELSSADEKRYRSLKRSTENQLLEAADVICCTCVGAGDGRLSRIKFTSIL 620
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
K+ IL GD CQL PV++ +KA G+ SL ER L G
Sbjct: 621 IDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--G 678
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLLLL 513
+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+ L
Sbjct: 679 IRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMFFL 734
Query: 514 DTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
T+ G EE +AG+G SF N EA V + AGV P I + +PY
Sbjct: 735 VTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGVKPEQIGIITPYEG 783
Query: 573 QVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D RR
Sbjct: 784 QRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRR 843
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+NVA+TRA + +V + + LL +
Sbjct: 844 LNVALTRAKYGIIIVGNPKVLSKQQLWNHLLNFYK 878
>gi|343085505|ref|YP_004774800.1| ATPase AAA [Cyclobacterium marinum DSM 745]
gi|342354039|gb|AEL26569.1| AAA ATPase [Cyclobacterium marinum DSM 745]
Length = 641
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/511 (30%), Positives = 237/511 (46%), Gaps = 80/511 (15%)
Query: 209 EDVTWLEENDLADWSEVKL-----------DGIMGKTFDDSQKKAIALGLNKKRPLLIIQ 257
E VT E N LA EV L G G + Q KA+ L + + + L I+
Sbjct: 147 ESVTASENNRLAHLKEVILGHKKPYFLARETGSAG-LLNAGQNKALEL-IEQAKDLAIVH 204
Query: 258 GPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISP 317
GPPGTGKT L + I A Q ++VLV AP+NAAVD +VE++ D L ++R+G+PARI
Sbjct: 205 GPPGTGKTTTLIQAIVSATQIYDQVLVCAPSNAAVDLLVERMGDENLEVLRIGHPARIDD 264
Query: 318 AVASKSLGEIV--------KSKLASFVAEFERKKSDLRKDL----RQCLKDDSLAAG--- 362
+ ++L + KL E+ RK + +++ R+ K AG
Sbjct: 265 KIIQRTLDAKILAHPSYKAYKKLRKEAEEYRRKANKFKRNFGHAEREKRKMHYNEAGKCQ 324
Query: 363 --IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------- 413
RQL + + +L S QV+ T GAA L++ TF +V
Sbjct: 325 AEARQLYDYMTHS-----------ILDSCQVIACTLVGAASNLLKG-KTFQVVFLDEAAQ 372
Query: 414 ------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLT 461
++ + AGD CQL P I SR+A + G+ +L E+A T ++ A L+
Sbjct: 373 GLEPATWIPIMKAQKVVFAGDHCQLPPTIKSREAAK-GLQNTLFEKAIT-NQPEAAQILS 430
Query: 462 TQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGS 521
QYRM +AI +++ Y LI+++ H L + + L +DT G
Sbjct: 431 VQYRMAEAIMGFSNIAFYNNKLIAAANTQKHYLAE---------GEATLAFIDT-AGSGF 480
Query: 522 LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL 581
L E L ++ + + + + + +PY AQV+ L+E +
Sbjct: 481 LEFKDRETLSISNKEEAFMLLTLLKDLLKRIGKNNSENQAWQVGLIAPYSAQVRLLKEMV 540
Query: 582 DDLPEA-------AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
E + ++T+D FQG+E D ++IS+ RSN G +GFL D+RRMNVA+TR
Sbjct: 541 AMDSEWIFLKQLDQNLTISTVDGFQGQERDIILISLTRSNEQGEIGFLADTRRMNVALTR 600
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
A + + V+ DS+TI +N F L + G
Sbjct: 601 AKRKLIVLGDSATIGNNGFYQSFLDFVHAKG 631
>gi|342320526|gb|EGU12466.1| ATP dependent helicase [Rhodotorula glutinis ATCC 204091]
Length = 1086
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 142/446 (31%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT I+ + +VLV AP+N AVD + EK+ GL +VR
Sbjct: 477 QKPLSLIQGPPGTGKTVTSASIVYHLSKMNPGQVLVAAPSNVAVDQLTEKIHQTGLKVVR 536
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E ++S ++ + SD +L + ++ ++Q
Sbjct: 537 VTAKSR-----------EALESSVSFLTLHAQVANSDTHPELSKLIQ-------LKQEQG 578
Query: 369 QLGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPLIRRLD---------------- 408
+L + ++K K KE+L++A V+ AT G DP ++ L
Sbjct: 579 ELSSSDERKFKALTRMVEKEILTNADVICATCVGCGDPRLKNLKFRTVLIDEATQATEPE 638
Query: 409 -----TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQ 463
TF + K+ ++ GD QL P I+++KA G+ SL ER L G +L Q
Sbjct: 639 CMIPLTFGV--KQLVMVGDHSQLGPTIMNKKAARAGLNQSLFERLILL--GNRPIRLQVQ 694
Query: 464 YRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGS 521
YRM+ ++ + S Y G+L + T L VD P+ +PT P+ Y
Sbjct: 695 YRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWPQPT----TPM--------YFH 742
Query: 522 LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL 581
+LG EE + +GT SF N EA V V AGV PS I + +PY Q +L +
Sbjct: 743 QNLGQEE-ISSSGT-SFLNRTEASNVEKIVTRFFKAGVMPSQIGIITPYEGQRSYLVSYM 800
Query: 582 D---DLPEA--AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
L + +EVA++D+FQGRE D VI+S VRSN +GFL D RR+NVA+TRA
Sbjct: 801 QMNGSLKKELYKEIEVASVDAFQGREKDYVIMSCVRSNEHQGIGFLNDPRRLNVALTRAK 860
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
+ ++ + + + LL H +
Sbjct: 861 YGLVILGNPKVLSKHALWHYLLTHYK 886
>gi|346970142|gb|EGY13594.1| ATP-dependent helicase NAM7 [Verticillium dahliae VdLs.17]
Length = 1099
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 221/453 (48%), Gaps = 55/453 (12%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDN 294
D +Q + A+ + PL +IQGPPGTGKT II A G +VLV AP+N AVD
Sbjct: 449 DLNQSQISAIKAVLQTPLSLIQGPPGTGKTVTSATIIYHLAKSSGGQVLVCAPSNVAVDQ 508
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLRQC 353
+ E++ GL +VR+ +R E V+S + SF+A E+ + +D +L
Sbjct: 509 LCERIHRTGLKVVRLTAKSR-----------EDVESSV-SFLALHEQVRMNDSNGEL--- 553
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
+K L + +L Q K K+ K +++L +A VV T GA DP + ++ +++
Sbjct: 554 VKLAQLKTELGELSSQDEKKFKQLTKAAERDILHNADVVCCTCVGAGDPRLSKIKFRNVL 613
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
K+ +L GD QL PVI+++KA + G+ SL ER L
Sbjct: 614 IDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVNLR-- 671
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+ +L TQYRM+ ++ + S Y GSL + T A L D F P + P++
Sbjct: 672 LQPIRLNTQYRMHPCLSEFPSNMFYDGSLQNGVTHAQRLRRDVDFPWP--VADTPMMFWS 729
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV P I V +PY Q
Sbjct: 730 --------NLGNEE-ISASGT-SYLNRTEASNVEKVVTRFFKAGVKPQDIGVITPYEGQR 779
Query: 575 QHLRERLDDL-----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + + VEVA++D+FQGRE D +++S VRS+ +GFL D RR+N
Sbjct: 780 SYIVSTMQNTGTFKKESYKEVEVASVDAFQGREKDFIVLSCVRSSDNQGIGFLSDPRRLN 839
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
V +TRA + ++ + + + LL H +
Sbjct: 840 VGLTRAKYGLVILGNPKVLSKHELWHHLLVHFK 872
>gi|149639074|ref|XP_001514946.1| PREDICTED: regulator of nonsense transcripts 1 [Ornithorhynchus
anatinus]
Length = 1113
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 481 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 540
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 541 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 589
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 590 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 642
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 643 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 700
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 701 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 749
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 750 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 808
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 809 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 868
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 869 IVGNPKALSKQPLWNHLLNYYK 890
>gi|17380291|sp|Q92900.2|RENT1_HUMAN RecName: Full=Regulator of nonsense transcripts 1; AltName:
Full=ATP-dependent helicase RENT1; AltName:
Full=Nonsense mRNA reducing factor 1; Short=NORF1;
AltName: Full=Up-frameshift suppressor 1 homolog;
Short=hUpf1
gi|119605144|gb|EAW84738.1| UPF1 regulator of nonsense transcripts homolog (yeast), isoform
CRA_a [Homo sapiens]
gi|119605147|gb|EAW84741.1| UPF1 regulator of nonsense transcripts homolog (yeast), isoform
CRA_a [Homo sapiens]
Length = 1129
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 495 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 554
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 555 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 603
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 604 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 656
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 657 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 714
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 715 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 763
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 764 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 822
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 823 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 882
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 883 IVGNPKALSKQPLWNHLLNYYK 904
>gi|168274489|dbj|BAG09664.1| regulator of nonsense transcripts 1 [synthetic construct]
Length = 1129
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 495 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 554
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 555 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 603
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 604 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 656
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 657 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 714
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 715 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 763
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 764 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 822
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 823 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 882
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 883 IVGNPKALSKQPLWNHLLNYYK 904
>gi|348500490|ref|XP_003437806.1| PREDICTED: regulator of nonsense transcripts 1-like [Oreochromis
niloticus]
Length = 1109
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 463 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 522
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 523 LCAKSR-----------EAIDSPVSFLALHNQTRNMDSMPELQKLQQLKDETGELSSSDE 571
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 572 KRYRALRRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 624
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 625 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 682
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 683 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 731
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 732 GQEEIASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 786
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 787 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 846
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 847 YGVIIVGNPKALSKQPLWNHLLNYYK 872
>gi|402904861|ref|XP_003915257.1| PREDICTED: regulator of nonsense transcripts 1, partial [Papio
anubis]
Length = 1041
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 407 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 466
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 467 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 515
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 516 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 568
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 569 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 626
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 627 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 675
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 676 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 734
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 735 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 794
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 795 IVGNPKALSKQPLWNHLLNYYK 816
>gi|387017334|gb|AFJ50785.1| Regulator of nonsense transcripts 1-like [Crotalus adamanteus]
Length = 1131
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 498 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 557
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 558 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 606
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 607 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 659
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 660 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 717
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 718 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 766
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 767 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 821
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 822 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 881
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 882 YGVIIVGNPKALSKQPLWNHLLNYYK 907
>gi|169615114|ref|XP_001800973.1| hypothetical protein SNOG_10712 [Phaeosphaeria nodorum SN15]
gi|160702890|gb|EAT82106.2| hypothetical protein SNOG_10712 [Phaeosphaeria nodorum SN15]
Length = 1078
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/442 (31%), Positives = 211/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II + +VLV AP+N AVD + E++ GL VR
Sbjct: 454 QKPLSLIQGPPGTGKTVTSATIIYHLCKISASQVLVCAPSNVAVDQLCERIHLTGLKTVR 513
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L K + L + + +L
Sbjct: 514 VTAKSR-----------EDVESPVGFLSLHEQVRMNDTNVELN---KLNQLKSDVGELSS 559
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K K+ + +E+L++A V+ T GA DP + ++
Sbjct: 560 QDEKKFKQLTRAAEREILNAADVICCTCVGAGDPRLSKMKFRTVLIDESTQSAEPECMIP 619
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA G+ SL ER L G +L QYRM+
Sbjct: 620 LVLGCKQVVLVGDHQQLGPVIMNKKAATAGLNQSLFERLVIL--GCSPIRLQVQYRMHPC 677
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T+ + D F P + P++ +LG EE
Sbjct: 678 LSEFPSNMFYEGSLQNGVTMQERIRRDVDFPWP--VADSPMMFWS--------NLGAEE- 726
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA+ V V AGV P I + +PY Q ++ + +A G
Sbjct: 727 ISASGT-SYLNRTEAQNVEKIVTRFFKAGVQPGDIGIITPYEGQRSYVVSSM----QATG 781
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VEVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 782 SFKKENYKDVEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLV 841
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL H +
Sbjct: 842 ILGNPKVLSKHPLWHYLLLHFK 863
>gi|355703337|gb|EHH29828.1| hypothetical protein EGK_10343, partial [Macaca mulatta]
Length = 1053
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 419 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 478
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 479 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 527
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 528 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 580
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 581 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 638
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 639 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 687
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 688 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 746
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 747 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 806
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 807 IVGNPKALSKQPLWNHLLNYYK 828
>gi|344283632|ref|XP_003413575.1| PREDICTED: regulator of nonsense transcripts 1-like [Loxodonta
africana]
Length = 1117
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 483 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 542
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 543 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 591
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 592 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 644
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 645 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 702
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 703 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 751
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 752 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 810
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 811 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 870
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 871 IVGNPKALSKQPLWNHLLNYYK 892
>gi|116197821|ref|XP_001224722.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88178345|gb|EAQ85813.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 1071
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 222/454 (48%), Gaps = 57/454 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ AI L+ PL +IQGPPGTGKT II + +VLV AP+N AVD
Sbjct: 433 LNHSQITAIKTVLSN--PLSLIQGPPGTGKTVTSATIIYHLAKINNSQVLVCAPSNVAVD 490
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLRQ 352
+ E++ GL +VR+ +R E V+S + SF+A E+ + +D +L +
Sbjct: 491 QLCERIHRTGLKVVRLTAKSR-----------EDVESSV-SFLALHEQVRMNDSNTELTK 538
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
+ L A +L Q K K+ + +E+L++A VV T GA DP + ++ ++
Sbjct: 539 LAR---LKADQGELSSQDEKKFKQLTRAAEREILNNADVVCCTCVGAGDPRLSKMKFRNV 595
Query: 413 V-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
+ K+ +L GD QL PVI+++KA + G+ SL ER L+
Sbjct: 596 LIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLN- 654
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
+L QYRM+ ++ + S Y GSL + TV+ L D F P + P++
Sbjct: 655 -FTPIRLNVQYRMHPCLSKFPSNMFYDGSLQNGVTVSERLRTDVDFPWP--VADTPMMFW 711
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
+LG EE + +GT S+ N EA V V + AGV I V +PY Q
Sbjct: 712 S--------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFLKAGVKALDIGVITPYEGQ 761
Query: 574 VQHLRERLDDL-----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
++ + + VEVA++D+FQGRE D +++S VRSN +GFL D RR+
Sbjct: 762 RSYIVSTMQNTGTFKKETYKEVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLSDPRRL 821
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
NVA+TRA + ++ + + + LL H +
Sbjct: 822 NVALTRAKYGLVIIGNPKVLSKHELWHHLLVHFK 855
>gi|426387932|ref|XP_004060416.1| PREDICTED: regulator of nonsense transcripts 1 [Gorilla gorilla
gorilla]
Length = 1055
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 421 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 480
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 481 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 529
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 530 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 582
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 583 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 640
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 641 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 689
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 690 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 748
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 749 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 808
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 809 IVGNPKALSKQPLWNHLLNYYK 830
>gi|297476262|ref|XP_002688572.1| PREDICTED: regulator of nonsense transcripts 1 [Bos taurus]
gi|296486196|tpg|DAA28309.1| TPA: UPF1 regulator of nonsense transcripts homolog [Bos taurus]
Length = 1116
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 482 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 541
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 542 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 590
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 591 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 643
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 644 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 701
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 702 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 750
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 751 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 809
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 810 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 869
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 870 IVGNPKALSKQPLWNHLLNYYK 891
>gi|73986070|ref|XP_533868.2| PREDICTED: regulator of nonsense transcripts 1 [Canis lupus
familiaris]
Length = 1119
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 485 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 544
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 545 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 593
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 594 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 646
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 647 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 704
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 705 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 753
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 754 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 812
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 813 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 872
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 873 IVGNPKALSKQPLWNHLLNYYK 894
>gi|363743891|ref|XP_418237.3| PREDICTED: regulator of nonsense transcripts 1 [Gallus gallus]
Length = 1096
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 462 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 521
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 522 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 570
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 571 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 623
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 624 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 681
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 682 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 730
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 731 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 789
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 790 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 849
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 850 IVGNPKALSKQPLWNHLLNYYK 871
>gi|410950946|ref|XP_003982163.1| PREDICTED: regulator of nonsense transcripts 1 [Felis catus]
Length = 1055
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 421 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 480
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 481 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 529
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 530 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 582
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 583 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 640
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 641 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 689
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 690 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 748
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 749 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 808
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 809 IVGNPKALSKQPLWNHLLNYYK 830
>gi|395847959|ref|XP_003796631.1| PREDICTED: regulator of nonsense transcripts 1 [Otolemur garnettii]
Length = 1118
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 484 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 543
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 544 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 592
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 593 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 645
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 646 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 703
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 704 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 752
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 753 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 811
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 812 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 871
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 872 IVGNPKALSKQPLWNHLLNYYK 893
>gi|1885356|gb|AAC51140.1| homolog of yeast UPF1 [Homo sapiens]
Length = 1118
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 484 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 543
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 544 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 592
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 593 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 645
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 646 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 703
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 704 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 752
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 753 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 807
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 808 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 867
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 868 YGVIIVGNPKALSKQPLWNHLLNYYK 893
>gi|395513182|ref|XP_003760808.1| PREDICTED: regulator of nonsense transcripts 1 [Sarcophilus
harrisii]
Length = 1050
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 416 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 475
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 476 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 524
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 525 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 577
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 578 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 635
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 636 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 684
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 685 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 743
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 744 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 803
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 804 IVGNPKALSKQPLWNHLLNYYK 825
>gi|194223788|ref|XP_001915294.1| PREDICTED: regulator of nonsense transcripts 1 [Equus caballus]
Length = 1079
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 445 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 504
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 505 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 553
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 554 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 606
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 607 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 664
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 665 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 713
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 714 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 772
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 773 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 832
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 833 IVGNPKALSKQPLWNHLLNYYK 854
>gi|421118364|ref|ZP_15578704.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410009997|gb|EKO68148.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
Length = 634
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 234/474 (49%), Gaps = 79/474 (16%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISP-AVAS------------KSLGEIVKS--KLA 333
N+A D +VE +S G+ ++R+G+PAR++ A+ S K L E K +++
Sbjct: 242 NSACDLLVESISTRGILVLRLGHPARVNEIAIHSTLDYKLFHHPDGKLLNEYRKDVIEIS 301
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+F+R + ++ R+ L + +K+L KT++ E + ++SS V++
Sbjct: 302 KQAKKFKRNFGEKEREERKKLFTE---------VKELKKTIRSMEIGLIDSLVSSHPVIV 352
Query: 394 ATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRK 434
+T +A ++ TFD L R ILAGD QL P + S K
Sbjct: 353 STPVASARGILEN-RTFDFCVLDESSQALEPAFWISILKSDRVILAGDHKQLPPTLFSEK 411
Query: 435 ALEGGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTV---A 490
+ +L E+AA L L TQYRM D I+++ SKE Y G L S +
Sbjct: 412 ---NYLETTLFEKAAENLESYGRVFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKERK 468
Query: 491 SHLLVDTPFVKP-TWI----TQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAE 545
S+ PF WI T ++LD S N EA+
Sbjct: 469 SNFPKTFPFSNAFQWIDTSGTDSEEVILD---------------------DSISNPFEAD 507
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+ V F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE
Sbjct: 508 LQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRC 566
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+++ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 567 ILLGFVRSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|397493981|ref|XP_003817874.1| PREDICTED: regulator of nonsense transcripts 1 [Pan paniscus]
Length = 1053
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 419 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 478
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 479 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 527
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 528 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 580
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 581 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 638
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 639 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 687
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 688 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 746
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 747 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 806
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 807 IVGNPKALSKQPLWNHLLNYYK 828
>gi|431922030|gb|ELK19203.1| Regulator of nonsense transcripts 1 [Pteropus alecto]
Length = 1087
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 453 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 512
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 513 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 561
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 562 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 614
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 615 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 672
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 673 MHPALSAFPSNIFYEGSLQNGVTAAERVKKGFDFQWPQ--PDKPMFFYVTQ--------- 721
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 722 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 780
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 781 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 840
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 841 IVGNPKALSKQPLWNHLLNYYK 862
>gi|18375673|ref|NP_002902.2| regulator of nonsense transcripts 1 [Homo sapiens]
gi|2739355|gb|AAB94785.1| pNORF1 [Homo sapiens]
gi|3328175|gb|AAC26788.1| nonsense-mediated mRNA decay trans-acting factor [Homo sapiens]
gi|24981038|gb|AAH39817.1| UPF1 regulator of nonsense transcripts homolog (yeast) [Homo
sapiens]
gi|119605145|gb|EAW84739.1| UPF1 regulator of nonsense transcripts homolog (yeast), isoform
CRA_b [Homo sapiens]
gi|119605146|gb|EAW84740.1| UPF1 regulator of nonsense transcripts homolog (yeast), isoform
CRA_b [Homo sapiens]
gi|119605148|gb|EAW84742.1| UPF1 regulator of nonsense transcripts homolog (yeast), isoform
CRA_b [Homo sapiens]
gi|383420499|gb|AFH33463.1| regulator of nonsense transcripts 1 [Macaca mulatta]
gi|383420501|gb|AFH33464.1| regulator of nonsense transcripts 1 [Macaca mulatta]
gi|387540714|gb|AFJ70984.1| regulator of nonsense transcripts 1 [Macaca mulatta]
gi|410220482|gb|JAA07460.1| UPF1 regulator of nonsense transcripts homolog [Pan troglodytes]
gi|410307484|gb|JAA32342.1| UPF1 regulator of nonsense transcripts homolog [Pan troglodytes]
Length = 1118
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 484 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 543
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 544 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 592
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 593 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 645
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 646 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 703
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 704 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 752
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 753 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 807
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 808 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 867
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 868 YGVIIVGNPKALSKQPLWNHLLNYYK 893
>gi|384939998|gb|AFI33604.1| regulator of nonsense transcripts 1 [Macaca mulatta]
gi|384940000|gb|AFI33605.1| regulator of nonsense transcripts 1 [Macaca mulatta]
Length = 1118
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 484 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 543
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 544 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 592
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 593 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 645
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 646 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 703
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 704 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 752
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 753 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 807
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 808 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 867
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 868 YGVIIVGNPKALSKQPLWNHLLNYYK 893
>gi|380800401|gb|AFE72076.1| regulator of nonsense transcripts 1, partial [Macaca mulatta]
gi|380800403|gb|AFE72077.1| regulator of nonsense transcripts 1, partial [Macaca mulatta]
Length = 1064
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 430 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 489
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 490 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 538
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 539 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 591
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 592 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 649
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 650 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 698
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 699 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 757
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 758 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 817
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 818 IVGNPKALSKQPLWNHLLNYYK 839
>gi|417764049|ref|ZP_12412022.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417768495|ref|ZP_12416423.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Pomona str. Pomona]
gi|418683983|ref|ZP_13245176.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418706140|ref|ZP_13266990.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418715893|ref|ZP_13275980.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
str. UI 08452]
gi|400324361|gb|EJO76657.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400353881|gb|EJP06034.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|409949468|gb|EKN99444.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Pomona str. Pomona]
gi|410764209|gb|EKR34926.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410788121|gb|EKR81847.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
str. UI 08452]
gi|455669128|gb|EMF34296.1| UvrD/REP helicase N-terminal domain protein [Leptospira interrogans
serovar Pomona str. Fox 32256]
Length = 634
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 234/474 (49%), Gaps = 79/474 (16%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISP-AVAS------------KSLGEIVKS--KLA 333
N+A D +VE +S G+ ++R+G+PAR++ A+ S K L E K +++
Sbjct: 242 NSACDLLVESISTRGILVLRLGHPARVNEIAIHSTLDYKLFHHPDGKLLNEYRKDVIEIS 301
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+F+R + ++ R+ L + +K+L KT++ E + ++SS V++
Sbjct: 302 KQAKKFKRNFGEKEREERKKLFTE---------VKELKKTIRSMEIGLIDSLVSSHPVIV 352
Query: 394 ATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRK 434
+T +A ++ TFD L R ILAGD QL P + S K
Sbjct: 353 STPVASARGILEN-RTFDFCVLDESSQALEPAFWISILKSDRVILAGDHKQLPPTLFSEK 411
Query: 435 ALEGGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTV---A 490
+ +L E+AA L L TQYRM D I+++ SKE Y G L S +
Sbjct: 412 ---NYLETTLFEKAAENLESYGRVFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKERK 468
Query: 491 SHLLVDTPFVKP-TWI----TQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAE 545
S+ PF WI T ++LD S N EA+
Sbjct: 469 SNFPKTFPFSNAFQWIDTSGTDSEEVILD---------------------DSISNPFEAD 507
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+ V F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE
Sbjct: 508 LQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRC 566
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+++ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 567 ILLGFVRSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|334326682|ref|XP_003340788.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
1-like [Monodelphis domestica]
Length = 1122
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 488 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 547
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 548 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 596
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 597 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 649
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 650 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 707
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 708 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 756
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 757 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 815
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 816 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 875
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 876 IVGNPKALSKQPLWNHLLNYYK 897
>gi|417413396|gb|JAA53027.1| Putative dna replication helicase, partial [Desmodus rotundus]
Length = 1052
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 418 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 477
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 478 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 526
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 527 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 579
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 580 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 637
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 638 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 686
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 687 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 745
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 746 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 805
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 806 IVGNPKALSKQPLWNHLLNYYK 827
>gi|224026767|ref|ZP_03645133.1| hypothetical protein BACCOPRO_03524 [Bacteroides coprophilus DSM
18228]
gi|224020003|gb|EEF78001.1| hypothetical protein BACCOPRO_03524 [Bacteroides coprophilus DSM
18228]
Length = 607
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 157/541 (29%), Positives = 244/541 (45%), Gaps = 98/541 (18%)
Query: 167 IQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVK 226
+Q D +Y EAL K + RN +A + +F ++ V S
Sbjct: 116 VQLYFDETSYRLMFEAL----KGVISARNNRLAELRDIFHGRQPV-----------SSFS 160
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286
+ + +Q++A+ L+ K + I+ GPPGTGKT L E + + + +VLV A
Sbjct: 161 FQPVRFPWLNRTQEEAVNKVLHAK-DVAIVHGPPGTGKTTTLVEAVYETLHRENQVLVCA 219
Query: 287 PTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKS 344
+N AVD + EKL D G++++R+GNP+R V K+ SF E FE
Sbjct: 220 QSNMAVDWISEKLVDRGVSVLRIGNPSR-------------VNDKMLSFTYERRFESHPD 266
Query: 345 -----DLRKDLRQC---LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATN 396
+RK +R+ ++ S IRQ + L + E + + A+V+ T
Sbjct: 267 YPQLWSIRKAVRELYARMRKASDRESIRQKINSLKDRATELEIRINASLFAEARVIACTL 326
Query: 397 TGAADPL-------------------------IRRLDTFDLVGKRCILAGDQCQLAPVIL 431
+A+ L IR++D R ILAGD CQL P +
Sbjct: 327 VSSANRLLEGQKFGTLFIDEAAQALEAACWIPIRKVD-------RVILAGDHCQLPPTVK 379
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
+AL G+G +L++ +A L QYRMN+ I ++S YGG + S+ V
Sbjct: 380 CPQALRAGLGETLMQTIVKNKPETVAL-LKLQYRMNEEIMRFSSDWFYGGMVQSAPEVKY 438
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV 551
++D P+ +DT + C E G N+ EAE+ V +
Sbjct: 439 RSILDF---------DTPIEWIDTE------DMDCNEEFVGENYGRI-NKAEAELSVSQL 482
Query: 552 FSLICAGVSPSA------IAVQSPYVAQVQHLRERLDD----LPEAAGVEVATIDSFQGR 601
+ I + + SPY AQVQ+LR+ L P + + V T+D FQG+
Sbjct: 483 KTYITKIGRERFLEERIDVGLISPYKAQVQYLRQLLKRDPFFKPYRSLITVNTVDGFQGQ 542
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
E D ++IS+VR+N G +GFL D RRMNVAITRA + ++ D ST+ + F +L +I
Sbjct: 543 ERDVILISLVRANEDGQIGFLSDLRRMNVAITRARMKLIILGDVSTLTRHAFYRKLYEYI 602
Query: 662 R 662
+
Sbjct: 603 Q 603
>gi|40788920|dbj|BAA19664.2| KIAA0221 [Homo sapiens]
Length = 1151
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 517 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 576
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 577 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 625
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 626 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 678
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 679 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 736
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 737 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 785
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 786 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 844
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 845 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 904
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 905 IVGNPKALSKQPLWNHLLNYYK 926
>gi|417782925|ref|ZP_12430648.1| AAA domain protein [Leptospira interrogans str. C10069]
gi|421120479|ref|ZP_15580790.1| AAA domain protein [Leptospira interrogans str. Brem 329]
gi|409953626|gb|EKO08122.1| AAA domain protein [Leptospira interrogans str. C10069]
gi|410346593|gb|EKO97563.1| AAA domain protein [Leptospira interrogans str. Brem 329]
gi|456821420|gb|EMF69926.1| AAA domain protein [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 634
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 231/474 (48%), Gaps = 79/474 (16%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISP-AVAS------------KSLGEIVKS--KLA 333
N+A D +VE +S G+ ++R+G+PARI+ A+ S K L E K +++
Sbjct: 242 NSACDLLVESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLLNEYRKDVIEIS 301
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+F+R + ++ R+ L + +K+L KT++ E + ++SS V++
Sbjct: 302 KQAKKFKRNFGEKEREERKKLFTE---------VKELKKTIRSMEIGLIDSLVSSHPVIV 352
Query: 394 ATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRK 434
+T +A ++ TFD L R ILAGD QL P + S K
Sbjct: 353 STPVASARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK 411
Query: 435 ALEGGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
+ +L E+A L L TQYRM D I+++ SKE Y G L S +
Sbjct: 412 ---NYLETTLFEKAVENLESYGRVFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKER- 467
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS--------FYNEGEAE 545
+ P L + +D +GT S N EA+
Sbjct: 468 --------------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDSISNPFEAD 507
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+ V F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE
Sbjct: 508 LQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRC 566
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+++ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 567 ILLGFVRSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|441628692|ref|XP_004089387.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
[Nomascus leucogenys]
Length = 1163
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 529 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 588
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 589 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 637
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 638 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 690
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 691 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 748
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 749 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 797
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 798 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 852
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 853 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 912
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 913 YGVIIVGNPKALSKQPLWNHLLNYYK 938
>gi|24214798|ref|NP_712279.1| DNA and RNA helicase [Leptospira interrogans serovar Lai str.
56601]
gi|386074163|ref|YP_005988480.1| DNA and RNA helicase [Leptospira interrogans serovar Lai str. IPAV]
gi|24195805|gb|AAN49297.1| DNA and RNA helicase [Leptospira interrogans serovar Lai str.
56601]
gi|353457952|gb|AER02497.1| DNA and RNA helicase [Leptospira interrogans serovar Lai str. IPAV]
Length = 634
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 231/474 (48%), Gaps = 79/474 (16%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISP-AVAS------------KSLGEIVKS--KLA 333
N+A D +VE +S G+ ++R+G+PARI+ A+ S K L E K +++
Sbjct: 242 NSACDLLVESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLLNEYRKDVIEIS 301
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+F+R + ++ R+ L + +K+L KT++ E + ++SS V++
Sbjct: 302 KQAKKFKRNFGEKEREERKKLFTE---------VKELKKTIRSMEIGLIDSLVSSHPVIV 352
Query: 394 ATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRK 434
+T +A ++ TFD L R ILAGD QL P + S K
Sbjct: 353 STPVASARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK 411
Query: 435 ALEGGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
+ +L E+A L L TQYRM D I+++ SKE Y G L S +
Sbjct: 412 ---NYLETTLFEKAVENLESYGRVFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKER- 467
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS--------FYNEGEAE 545
+ P L + +D +GT S N EA+
Sbjct: 468 --------------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDSISNPFEAD 507
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+ V F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE
Sbjct: 508 LQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRC 566
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+++ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 567 ILLGFVRSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|417761126|ref|ZP_12409140.1| AAA domain protein [Leptospira interrogans str. 2002000624]
gi|417775436|ref|ZP_12423289.1| AAA domain protein [Leptospira interrogans str. 2002000621]
gi|418672662|ref|ZP_13233998.1| AAA domain protein [Leptospira interrogans str. 2002000623]
gi|409943120|gb|EKN88723.1| AAA domain protein [Leptospira interrogans str. 2002000624]
gi|410574761|gb|EKQ37790.1| AAA domain protein [Leptospira interrogans str. 2002000621]
gi|410580350|gb|EKQ48175.1| AAA domain protein [Leptospira interrogans str. 2002000623]
Length = 634
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 231/474 (48%), Gaps = 79/474 (16%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISP-AVAS------------KSLGEIVKS--KLA 333
N+A D +VE +S G+ ++R+G+PARI+ A+ S K L E K +++
Sbjct: 242 NSACDLLVESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLLNEYRKDVIEIS 301
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+F+R + ++ R+ L + +K+L KT++ E + ++SS V++
Sbjct: 302 KQAKKFKRNFGEKEREERKKLFTE---------VKELKKTIRSMEIGLIDSLVSSHPVIV 352
Query: 394 ATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRK 434
+T +A ++ TFD L R ILAGD QL P + S K
Sbjct: 353 STPVASARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK 411
Query: 435 ALEGGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
+ +L E+A L L TQYRM D I+++ SKE Y G L S +
Sbjct: 412 ---NYLETTLFEKAVENLESYGRVFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKER- 467
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS--------FYNEGEAE 545
+ P L + +D +GT S N EA+
Sbjct: 468 --------------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDSISNPFEAD 507
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+ V F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE
Sbjct: 508 LQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRC 566
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+++ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 567 ILLGFVRSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|281343547|gb|EFB19131.1| hypothetical protein PANDA_000565 [Ailuropoda melanoleuca]
Length = 1122
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 488 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 547
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 548 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 596
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 597 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 649
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 650 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 707
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 708 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 756
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 757 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 815
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 816 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 875
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 876 IVGNPKALSKQPLWNHLLNYYK 897
>gi|170784813|ref|NP_001116301.1| regulator of nonsense transcripts 1 isoform a [Mus musculus]
gi|150387852|sp|Q9EPU0.2|RENT1_MOUSE RecName: Full=Regulator of nonsense transcripts 1; AltName:
Full=ATP-dependent helicase RENT1; AltName:
Full=Nonsense mRNA reducing factor 1; Short=NORF1;
AltName: Full=Up-frameshift suppressor 1 homolog;
Short=mUpf1
gi|33989570|gb|AAH56442.1| Upf1 protein [Mus musculus]
Length = 1124
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 213/443 (48%), Gaps = 63/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 490 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 549
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 550 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 598
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 599 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 651
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 652 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 709
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 710 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------G 759
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 760 QEE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 816
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 817 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 876
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 877 IIVGNPKALSKQPLWNHLLSYYK 899
>gi|297276540|ref|XP_002808229.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
1-like [Macaca mulatta]
Length = 1096
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 462 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 521
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 522 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 570
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 571 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 623
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 624 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 681
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 682 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 730
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 731 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 789
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 790 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 849
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 850 IVGNPKALSKQPLWNHLLNYYK 871
>gi|302422300|ref|XP_003008980.1| ATP-dependent helicase NAM7 [Verticillium albo-atrum VaMs.102]
gi|261352126|gb|EEY14554.1| ATP-dependent helicase NAM7 [Verticillium albo-atrum VaMs.102]
Length = 1041
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 223/454 (49%), Gaps = 57/454 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVD 293
+ SQ AI L + PL +IQGPPGTGKT II A G +VLV AP+N AVD
Sbjct: 420 LNQSQISAIKAVL--QTPLSLIQGPPGTGKTVTSATIIYHLAKSSGGQVLVCAPSNVAVD 477
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLRQ 352
+ E++ GL +VR+ +R E V+S + SF+A E+ + +D +L
Sbjct: 478 QLCERIHRTGLKVVRLTAKSR-----------EDVESSV-SFLALHEQVRMNDSNGEL-- 523
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
+K L + +L Q K K+ K +++L +A VV T GA DP + ++ ++
Sbjct: 524 -VKLAQLKTELGELSSQDEKKFKQLTKAAERDILHNADVVCCTCVGAGDPRLSKIKFRNV 582
Query: 413 V-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
+ K+ +L GD QL PVI+++KA + G+ SL ER L
Sbjct: 583 LIDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVNLR- 641
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
+ +L TQYRM+ ++ + S Y GSL + T A L D F P +
Sbjct: 642 -LQPIRLNTQYRMHPCLSEFPSNMFYDGSLQNGVTHAQRLRRDVDF---------PWPVA 691
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
DT + + S +LG EE + +GT S+ N EA V V AGV P I V +PY Q
Sbjct: 692 DTPMMFWS-NLGNEE-ISASGT-SYLNRTEASNVEKVVTRFFKAGVKPQDIGVITPYEGQ 748
Query: 574 VQHLRERLDDL-----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
++ + + VEVA++D+FQGRE D +++S VRS+ +GFL D RR+
Sbjct: 749 RSYIVSTMQNTGTFKKESYKEVEVASVDAFQGREKDFIVLSCVRSSDNQGIGFLSDPRRL 808
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
NV +TRA + ++ + + + LL H +
Sbjct: 809 NVGLTRAKYGLVILGNPKVLSKHELWHHLLVHFK 842
>gi|392333562|ref|XP_003752928.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 2
[Rattus norvegicus]
gi|392353859|ref|XP_003751614.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 1
[Rattus norvegicus]
Length = 1124
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 213/443 (48%), Gaps = 63/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 490 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 549
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 550 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 598
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 599 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 651
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 652 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 709
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 710 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------G 759
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 760 QEE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 816
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 817 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 876
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 877 IIVGNPKALSKQPLWNHLLSYYK 899
>gi|355767117|gb|EHH62580.1| hypothetical protein EGM_20966 [Macaca fascicularis]
Length = 1041
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 139/446 (31%), Positives = 215/446 (48%), Gaps = 71/446 (15%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR+
Sbjct: 408 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRL 467
Query: 310 GNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIRQ 365
+R E + S ++ + + D +L+ Q LKD++ L++ +
Sbjct: 468 CAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEK 516
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------ 413
+ L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 517 RYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPEC 569
Query: 414 -------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM
Sbjct: 570 MVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRM 627
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 628 HPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------GQ 677
Query: 527 EEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 678 EE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 730
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 731 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 790
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 791 YGVIIVGNPKALSKQPLWNHLLNYYK 816
>gi|296233329|ref|XP_002761973.1| PREDICTED: regulator of nonsense transcripts 1, partial [Callithrix
jacchus]
Length = 1164
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 530 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 589
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 590 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 638
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 639 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 691
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 692 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 749
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 750 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 798
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 799 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 857
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 858 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 917
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 918 IVGNPKALSKQPLWNHLLNYYK 939
>gi|358412841|ref|XP_001789963.2| PREDICTED: regulator of nonsense transcripts 1 [Bos taurus]
Length = 1063
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 429 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 488
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 489 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 537
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 538 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 590
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 591 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 648
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 649 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 697
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 698 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 752
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 753 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 812
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 813 YGVIIVGNPKALSKQPLWNHLLNYYK 838
>gi|328709620|ref|XP_003244017.1| PREDICTED: regulator of nonsense transcripts 1-like [Acyrthosiphon
pisum]
Length = 1125
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 140/441 (31%), Positives = 209/441 (47%), Gaps = 59/441 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+ G VLV AP+N AVD + EK+ GL +VR
Sbjct: 463 QRPLSLIQGPPGTGKTVTSATIVYQLVKINGGPVLVCAPSNIAVDQLTEKIHRTGLKVVR 522
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
V +R E + S ++ + +K +L+ Q LKD++ +L
Sbjct: 523 VCAKSR-----------EAIDSPVSFLALHNQVRKMSCNVELQKFQQLKDET-----GEL 566
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
K + +K +E+L +A V+ T GA DP + R ++
Sbjct: 567 SMADEKRYRALKKAAERELLKAADVICTTCVGAGDPRLVRFKFHSILIDESMQATEPECM 626
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 627 VPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 684
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
++ + S Y GSL + L F P + P+L T+ G E
Sbjct: 685 PELSRFPSNFFYEGSLQNGVCADDRKLSKIEFPWP--VADKPMLFYVTQ--------GQE 734
Query: 528 EHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---D 583
E +AG+G S+ N EA V + GV P I + +PY Q +L + +
Sbjct: 735 E---IAGSGTSYLNRTEAANVEKIATRFLRCGVKPDQIGIITPYEGQRAYLVQYMQYQAP 791
Query: 584 LPEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAV 641
LP +E+A++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA + +
Sbjct: 792 LPAKVYQEIEIASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGILI 851
Query: 642 VCDSSTICHNTFLARLLRHIR 662
V + + LL + +
Sbjct: 852 VGNPKVLSKQQLWNHLLNYYK 872
>gi|444726614|gb|ELW67138.1| Regulator of nonsense transcripts 1 [Tupaia chinensis]
Length = 1000
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 213/443 (48%), Gaps = 63/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 442 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 501
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 502 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 550
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 551 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 603
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 604 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 661
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 662 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------G 711
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 712 QEE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 768
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 769 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 828
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 829 IIVGNPKALSKQPLWNHLLNYYK 851
>gi|354473860|ref|XP_003499150.1| PREDICTED: regulator of nonsense transcripts 1-like [Cricetulus
griseus]
Length = 1061
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 427 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 486
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 487 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 535
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 536 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 588
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 589 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 646
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 647 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 695
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 696 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 754
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 755 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 814
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 815 IVGNPKALSKQPLWNHLLSYYK 836
>gi|198274180|ref|ZP_03206712.1| hypothetical protein BACPLE_00320 [Bacteroides plebeius DSM 17135]
gi|198272855|gb|EDY97124.1| putative DNA helicase [Bacteroides plebeius DSM 17135]
Length = 630
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 147/465 (31%), Positives = 227/465 (48%), Gaps = 75/465 (16%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q +A+ L+ K + I+ GPPGTGKT L E I + + +VLV A +N AVD + E
Sbjct: 195 TQDEAVNKVLHAK-DVAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNMAVDWISE 253
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDL 350
KL D G++++R+GNP+R V K+ SF E FE +RK +
Sbjct: 254 KLVDRGVSVLRIGNPSR-------------VNDKMLSFTYERRFESHPDYPQLWSIRKAI 300
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKE----TVKEVLSSAQVVLATNTGAADPLI-- 404
R+ L S R+ ++Q +LK + E + + S A+V+ T G+A+ L+
Sbjct: 301 RE-LYTRSRKGNDRESIRQKINSLKDRATELEIRINESLFSEARVIACTLVGSANRLLTG 359
Query: 405 RRLDTFDL----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERA 448
++ T + R I AGD CQL P + + +AL G+G +L++ A
Sbjct: 360 QKFGTVFIDEAAQALEAACWIPLRKADRVIWAGDHCQLPPTVKNPEALRAGLGHTLMQ-A 418
Query: 449 ATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVA--SHLLVDTPFVKPTWIT 506
++ + + L QYRMND I ++S YGG L S+ V S L DTP W+
Sbjct: 419 IVKNKPEVVSLLKVQYRMNDEIMRFSSDWFYGGMLQSAPEVKYRSILDFDTPI---EWV- 474
Query: 507 QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA--- 563
+ + C E G N+ EAE+ + + I
Sbjct: 475 -------------NTEGMDCNEEFVGENYGRI-NKPEAELSIGQLKEYITKIGRERFLEE 520
Query: 564 ---IAVQSPYVAQVQHLRE--RLDDL--PEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
+ + SPY AQVQ+LR+ R D P + + + T+D FQG+E D ++IS+VR+N
Sbjct: 521 RIDVGLISPYKAQVQYLRQLVRKDAFFKPYRSLITINTVDGFQGQERDVILISLVRANED 580
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
G +GFL D RRMNVAITRA + ++ D+ST+ + F +L ++
Sbjct: 581 GQIGFLNDLRRMNVAITRARMKLIILGDASTLTKHAFYKKLYEYV 625
>gi|455789602|gb|EMF41523.1| AAA domain protein [Leptospira interrogans serovar Lora str. TE
1992]
Length = 634
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 231/474 (48%), Gaps = 79/474 (16%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISP-AVAS------------KSLGEIVKS--KLA 333
N+A D +VE +S G+ ++R+G+PARI+ A+ S K L E K +++
Sbjct: 242 NSACDLLVESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLLNEYRKDVIEIS 301
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+F+R + ++ R+ L + +K+L KT++ E + ++SS V++
Sbjct: 302 KQAKKFKRNFGEKEREERKKLFTE---------VKELKKTIRSMEIGLIDSLVSSHPVIV 352
Query: 394 ATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRK 434
+T +A ++ TFD L R ILAGD QL P + S K
Sbjct: 353 STPVASARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK 411
Query: 435 ALEGGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
+ +L E+A L L TQYRM D I+++ SKE Y G L S +
Sbjct: 412 ---NYLETTLFEKAVENLESYGRIFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKER- 467
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS--------FYNEGEAE 545
+ P L + +D +GT S N EA+
Sbjct: 468 --------------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDSISNPFEAD 507
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+ V F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE
Sbjct: 508 LQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRC 566
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+++ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 567 ILLGFVRSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|327200471|pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
gi|327200473|pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 213/443 (48%), Gaps = 63/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 193 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 252
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 253 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 301
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 302 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 354
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 355 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 412
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 413 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------G 462
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 463 QEE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 519
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 520 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 579
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 580 IIVGNPKALSKQPLWNHLLNYYK 602
>gi|255713384|ref|XP_002552974.1| KLTH0D05786p [Lachancea thermotolerans]
gi|238934354|emb|CAR22536.1| KLTH0D05786p [Lachancea thermotolerans CBS 6340]
Length = 982
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 220/456 (48%), Gaps = 63/456 (13%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ AI L +RPL +IQGPPGTGKT I+ + ER+LV AP+N AVD++
Sbjct: 418 SQANAIRHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKLHKERILVCAPSNVAVDHLA 475
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKD 356
KL D+GL +VR+ +R + +LG L + V+ R + K
Sbjct: 476 AKLRDLGLKVVRLTAKSREDVESSVSNLG------LHNLVS---------RSAKGELKKL 520
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-FDLV-- 413
L + +L K K+ +++ E+L A VV T GA D +RL+ F V
Sbjct: 521 LKLKEDVGELSPSDAKKFVKQVRKSELEILKKADVVCCTCVGAGD---KRLEAKFRTVLI 577
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
K+ +L GD QL PVIL RKA + G+ SL ER +L G
Sbjct: 578 DESTQASEPECLIPIVKGAKQVVLVGDHQQLGPVILDRKAADAGLKQSLFERLISL--GH 635
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
+ +L QYRMN ++ + S Y GSL + T+ + ++ F P I P++
Sbjct: 636 IPIRLEVQYRMNPHLSEFPSNMFYEGSLQNGVTIEQRSVTNSTFPWP--IHDLPMMFWS- 692
Query: 516 RLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+ G EE ++G G S+ N EA + L GV P I V +PY Q
Sbjct: 693 -------NYGREE---ISGNGTSYLNRIEAMNCERVITKLFKDGVKPDQIGVITPYEGQR 742
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D RR+N
Sbjct: 743 AYIVQYMQMNGSMDKELYMNVEVASVDAFQGREKDYIILSCVRANEQQAIGFLSDPRRLN 802
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
VA+TR+ + ++ + ++ N+ + LL + R G
Sbjct: 803 VALTRSKYGLVILGNPRSLSRNSLWSHLLVYFREKG 838
>gi|148696866|gb|EDL28813.1| UPF1 regulator of nonsense transcripts homolog (yeast), isoform
CRA_a [Mus musculus]
Length = 1131
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 497 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 556
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 557 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 605
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 606 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 658
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 659 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 716
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 717 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 765
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 766 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 820
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 821 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 880
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 881 YGVIIVGNPKALSKQPLWNHLLSYYK 906
>gi|310800151|gb|EFQ35044.1| RNA helicase [Glomerella graminicola M1.001]
Length = 1086
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 213/436 (48%), Gaps = 53/436 (12%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT II + +VLV AP+N AVD + E++ GL +VR+
Sbjct: 464 PLSLIQGPPGTGKTVTSATIIYHLCKMNNGQVLVCAPSNVAVDQLCERIHRTGLKVVRLT 523
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQL 370
+R E V+S + SF+A E+ + + + +K L + + +L Q
Sbjct: 524 AKSR-----------EDVESSV-SFLALHEQVR--MNDSNGELVKLAQLKSELGELSSQD 569
Query: 371 GKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------------- 413
K K+ K +++L +A VV T GA DP + ++ +++
Sbjct: 570 EKKFKQLTKAAERDILHNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPLV 629
Query: 414 --GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
K+ +L GD QL PVI+++KA + G+ SL ER L ++ +L QYRM+ ++
Sbjct: 630 LGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVNLR--LVPIRLNIQYRMHPCLS 687
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
+ S Y GSL + TV + D F P + P++ +LG EE +
Sbjct: 688 EFPSNMFYDGSLQNGVTVRERVRRDVDFPWP--VVDMPMMFWS--------NLGNEE-IS 736
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-----PE 586
+GT S+ N EA V V AGV P I V +PY Q ++ + +
Sbjct: 737 ASGT-SYLNRTEASNVEKVVTRFFKAGVKPLDIGVITPYEGQRSYIVSTMQNTGTFKKES 795
Query: 587 AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ +
Sbjct: 796 YKEVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLSDPRRLNVALTRAKYGLVIIGNPK 855
Query: 647 TICHNTFLARLLRHIR 662
+ + LL H +
Sbjct: 856 VLSKHELWHHLLVHFK 871
>gi|418726118|ref|ZP_13284729.1| AAA domain protein [Leptospira interrogans str. UI 12621]
gi|418733454|ref|ZP_13290578.1| AAA domain protein [Leptospira interrogans str. UI 12758]
gi|409960028|gb|EKO23782.1| AAA domain protein [Leptospira interrogans str. UI 12621]
gi|410773063|gb|EKR53094.1| AAA domain protein [Leptospira interrogans str. UI 12758]
Length = 634
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 231/474 (48%), Gaps = 79/474 (16%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISP-AVAS------------KSLGEIVKS--KLA 333
N+A D +VE +S G+ ++R+G+PARI+ A+ S K L E K +++
Sbjct: 242 NSACDLLVESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLLNEYRKDVIEIS 301
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+F+R + ++ R+ L + +K+L KT++ E + ++SS V++
Sbjct: 302 KQAKKFKRNFGEKEREERKKLFTE---------VKELKKTIRSMEIGLIDSLVSSHPVIV 352
Query: 394 ATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRK 434
+T +A ++ TFD L R ILAGD QL P + S K
Sbjct: 353 STPVASARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK 411
Query: 435 ALEGGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
+ +L E+A L L TQYRM D I+++ SKE Y G L S +
Sbjct: 412 ---NYLETTLFEKAVENLESYGRIFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKER- 467
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS--------FYNEGEAE 545
+ P L + +D +GT S N EA+
Sbjct: 468 --------------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDSISNPFEAD 507
Query: 546 IVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+ V F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE
Sbjct: 508 LQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRC 566
Query: 606 VIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+++ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 567 ILLGFVRSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|403303596|ref|XP_003942412.1| PREDICTED: regulator of nonsense transcripts 1 [Saimiri boliviensis
boliviensis]
Length = 1257
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 623 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 682
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 683 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 731
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 732 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 784
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 785 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 842
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 843 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 891
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 892 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 950
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 951 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 1010
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 1011 IVGNPKALSKQPLWNHLLNYYK 1032
>gi|393903974|gb|EFO18850.2| hypothetical protein LOAG_09644, partial [Loa loa]
Length = 685
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 229/461 (49%), Gaps = 53/461 (11%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
++ Q++A++ LNK RP++ I GPPGTGKT ++ EI+ AV + ++VL+ AP+N AV+N
Sbjct: 221 LNEDQRRAVSAALNKSRPIVTIHGPPGTGKTAVIAEIVIEAVSRKQKVLICAPSNVAVNN 280
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+V++L D+ I +G + +S LAS + + + K SD++ ++
Sbjct: 281 IVDRLKDLD-GICVLGFNSELS---------------LASELEQHD-KFSDIQCAFKKLH 323
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEK--ETVKE-VLSSAQVVLATNTGAADPLIRR----- 406
++ + GK K +KE ++S QV++ T T ++ +R
Sbjct: 324 SEEGSGIISGNNRDEHGKAWHHASKMLWNLKESIVSCKQVIVCTLTNSSLRFLREQGFQP 383
Query: 407 -LDTFD--------------LVGKRCILAGDQCQLAPVILSRKALE-GGIGVSLLERAAT 450
L D L+ +R ++ GD QL PV+ + + E I SLL+ +
Sbjct: 384 NLTIIDEAAQALECVAWYSLLLSRRAVIVGDLWQLPPVLKTSRLREMDDISNSLLDTLSK 443
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
+ LT QYRMN I W S Y L + +A+ LL D V + P+
Sbjct: 444 RFGETNSFMLTEQYRMNKKIMKWPSSFFYKSQLRPNEHIANQLLSDISKVPKGSLFDEPM 503
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ +DT + E+++ S+ N EA++++ +V +L GV I + +PY
Sbjct: 504 VFIDTSHDKSA------ENIEKLYRYSYANALEAKLIIRYVTALSTFGVREEDIGIIAPY 557
Query: 571 VAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
+AQV L++ L V ++D+FQG+E + V++S+VR+N+ G +GFL D RR NV
Sbjct: 558 IAQVDMLKKSL------KTSRVNSVDAFQGQECEVVVMSLVRNNSDGRIGFLKDERRFNV 611
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
A+TRA + +V + + H L L +++ GR+ E
Sbjct: 612 AVTRARRQFVLVGNVRMMKHAAHLQSLTEYMQSHGRIVKQE 652
>gi|221055089|ref|XP_002258683.1| regulator of nonsense transcripts [Plasmodium knowlesi strain H]
gi|193808753|emb|CAQ39455.1| regulator of nonsense transcripts, putative [Plasmodium knowlesi
strain H]
Length = 1516
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 138/435 (31%), Positives = 219/435 (50%), Gaps = 60/435 (13%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT ++ + + +VLVTAP+N AVD + ++ GL +VR+
Sbjct: 808 PLSLIQGPPGTGKTLTCATLVYHLSKTKMGKVLVTAPSNVAVDQLSVRIHKTGLKVVRLC 867
Query: 311 NPAR-ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+R P++A + + KSD+ ++L + L+ L + +L ++
Sbjct: 868 AKSREYVPSIAD----------YLYLHNQMKLIKSDIGEELNKLLE---LKEEVGELSQK 914
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
+ LKK ++L A V+ T GA D ++R F V
Sbjct: 915 DERRLKKLIFFAEYKILVEADVICTTCVGAMDKRLKRF-RFSQVLVDEATQSTEPECLVP 973
Query: 414 ----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
K+ +L GD CQL P+I+ +KA G+G SL ER L G+ +L QYRM+ A
Sbjct: 974 LVTGAKQIVLVGDHCQLGPIIVCKKAANAGLGKSLFERLVML--GITPFRLEVQYRMHPA 1031
Query: 470 IASWASKEMYGGSLISSSTVAS--HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
++ + S Y G L + T+ + L D P+ P +CP+ + S G E
Sbjct: 1032 LSEFPSYVFYDGCLQNGITLKEREYPLKDFPWPNP----KCPMFFYN--------STGLE 1079
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ---VQHLRERLDDL 584
E + +GT S+ N EA + V +LI G+ PS I V +PY Q + L ++
Sbjct: 1080 E-MSASGT-SYLNRAEASNMEKLVRTLINCGLKPSQIGVITPYEGQRAYITSLFQKNISY 1137
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
+ +EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA K+ ++C
Sbjct: 1138 QHSTEIEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRRLNVALTRA-KYGLIICG 1196
Query: 645 SSTIC--HNTFLARL 657
++ + H+ + +L
Sbjct: 1197 NAKVLSRHHVMIKKL 1211
>gi|12836885|gb|AAK08652.1|AF182947_1 nonsense mRNA reducing factor 1 NORF1 [Mus musculus]
Length = 1113
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 479 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 538
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 539 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 587
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 588 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 640
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 641 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 698
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 699 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 747
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 748 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 806
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 807 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 866
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 867 IVGNPKALSKQPLWNHLLSYYK 888
>gi|170784811|ref|NP_109605.2| regulator of nonsense transcripts 1 isoform b [Mus musculus]
gi|11993646|gb|AAG42830.1|AF322655_1 regulator of nonsense transcripts 1 [Mus musculus]
gi|30354613|gb|AAH52149.1| UPF1 regulator of nonsense transcripts homolog (yeast) [Mus
musculus]
gi|148696867|gb|EDL28814.1| UPF1 regulator of nonsense transcripts homolog (yeast), isoform
CRA_b [Mus musculus]
Length = 1113
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 479 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 538
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 539 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 587
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 588 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 640
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 641 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 698
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 699 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 747
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 748 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 806
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 807 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 866
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 867 IVGNPKALSKQPLWNHLLSYYK 888
>gi|421123849|ref|ZP_15584119.1| AAA domain protein [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421134672|ref|ZP_15594805.1| AAA domain protein [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410021256|gb|EKO88048.1| AAA domain protein [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410438336|gb|EKP87422.1| AAA domain protein [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
Length = 634
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 228/468 (48%), Gaps = 67/468 (14%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
N+A D +VE +S G+ ++R+G+PARI+ +L G+++ ++ V E
Sbjct: 242 NSACDLLVESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
++ +++ + K+ +K+L KT++ E + ++SS V+++T +
Sbjct: 301 SKQAKKFKRNFGE--KEREERKKFFTEVKELKKTIRSMEIGLIDSLVSSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGI 440
A ++ TFD L R ILAGD QL P + S K +
Sbjct: 359 ARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK---NYL 414
Query: 441 GVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+L E+A L L TQYRM D I+++ SKE Y G L S +
Sbjct: 415 ETTLFEKAVENLESYGRVFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKER------- 467
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS--------FYNEGEAEIVVHHV 551
+ P L + +D +GT S N EA++ V
Sbjct: 468 --------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDSISNPFEADLQVRLC 513
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE +++ V
Sbjct: 514 FLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRCILLGFV 572
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
RSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 573 RSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|418692553|ref|ZP_13253631.1| AAA domain protein [Leptospira interrogans str. FPW2026]
gi|400357786|gb|EJP13906.1| AAA domain protein [Leptospira interrogans str. FPW2026]
Length = 634
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 142/468 (30%), Positives = 228/468 (48%), Gaps = 67/468 (14%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSKLASFVAEF 339
N+A D +VE +S G+ ++R+G+PARI+ +L G+++ ++ V E
Sbjct: 242 NSACDLLVESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLL-NEYRKDVIEI 300
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
++ +++ + K+ +K+L KT++ E + ++SS V+++T +
Sbjct: 301 SKQAKKFKRNFGE--KEREERKKFFTEVKELKKTIRSMEIGLIDSLVSSHPVIVSTPVAS 358
Query: 400 ADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGI 440
A ++ TFD L R ILAGD QL P + S K +
Sbjct: 359 ARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK---NYL 414
Query: 441 GVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+L E+A L L TQYRM D I+++ SKE Y G L S +
Sbjct: 415 ETTLFEKAVENLESYGRVFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKER------- 467
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS--------FYNEGEAEIVVHHV 551
+ P L + +D +GT S N EA++ V
Sbjct: 468 --------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDSISNPFEADLQVRLC 513
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMV 611
F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE +++ V
Sbjct: 514 FLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRCILLGFV 572
Query: 612 RSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
RSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 573 RSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|48727634|gb|AAT46119.1| RENT1 [Mus musculus]
Length = 1113
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 211/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 479 QRPLSFIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 538
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 539 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 587
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 588 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 640
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 641 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 698
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 699 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 747
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 748 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 806
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 807 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 866
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 867 IVGNPKALSKQPLWNHLLSYYK 888
>gi|390344703|ref|XP_786803.3| PREDICTED: regulator of nonsense transcripts 1-like
[Strongylocentrotus purpuratus]
Length = 1386
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 143/443 (32%), Positives = 216/443 (48%), Gaps = 65/443 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
RPL +IQGPPGTGKT I+ +QG +VLV AP+N AVD + EK+ GL +VR+
Sbjct: 701 RPLSLIQGPPGTGKTVTSASIVYHLAKQGTGQVLVCAPSNIAVDQLTEKIHKTGLKVVRL 760
Query: 310 GNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
+R I V+ SL V++ AE +K L+ ++ + +D
Sbjct: 761 CAKSREAIDSPVSFLSLHNQVRNMEG---AEEMQKLQALKDEMGELSSND---------- 807
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------- 413
++ +TLK+ +E+L +A V+ T GA DP R F V
Sbjct: 808 EKRYRTLKRN---CERELLQNADVICCTCVGAGDPRFARF-RFRAVLIDESTQSTEPECL 863
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
++ +L GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 864 IPAVLGSRQLVLVGDHCQLGPVVMCKKAANAGLCQSLFERLVVL--GIRPIRLQVQYRMH 921
Query: 468 DAIASWASKEMYGGSLISSSTVASHL--LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+++++ S Y GSL + T A + VD PF +P P+ T G
Sbjct: 922 PSLSAFPSNIFYEGSLQNGVTAAERINRAVDFPFPQP----DKPMFFYAT--------TG 969
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQHLRER 580
EE +A +G S+ N EA V + AGV P I + +PY Q VQ+++
Sbjct: 970 QEE---IASSGTSYLNRTEASNVEKLTTRFLRAGVKPEQIGIITPYEGQRAFIVQYMQYS 1026
Query: 581 LD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
++ VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TR V
Sbjct: 1027 GPLNVKLYQEVEIASVDAFQGREKDYIILSCVRANDHQGIGFLNDPRRLNVALTRGRYGV 1086
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + + LL + +
Sbjct: 1087 IIVGNPKVLSRHPLWNHLLSYYK 1109
>gi|361128156|gb|EHL00106.1| putative Regulator of nonsense transcripts 1 like protein [Glarea
lozoyensis 74030]
Length = 898
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 137/438 (31%), Positives = 208/438 (47%), Gaps = 53/438 (12%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL +VR
Sbjct: 268 QKPLSLIQGPPGTGKTVTSATIIYHLAKVNGGQVLVCAPSNVAVDQLCERIHRTGLKVVR 327
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ +R E V+S + + + +D +L K L + +L
Sbjct: 328 LTAKSR-----------EDVESTVGFLSLHEQVRMNDSNLEL---TKLSQLKGELGELSS 373
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K K + +E+L+SA V+ T GA DP + ++
Sbjct: 374 QDEKKFKTLTRAAEREILNSADVICCTCVGAGDPRLAKMKFRTVLIDESTQSAEPECMIP 433
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G+ +L QYRM+
Sbjct: 434 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GLAPIRLNVQYRMHPC 491
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T+ L D F P + P++ +LG EE
Sbjct: 492 LSQFPSNMFYEGSLQNGVTMQQRLRRDVDFPWP--VGDTPMMFWS--------NLGNEE- 540
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL----- 584
+ +GT S+ N EA V V AGV P I V +PY Q + + +
Sbjct: 541 ISASGT-SYLNRTEASNVEKIVTRFFKAGVQPQDIGVITPYEGQRSFVVSSMQNTGTFKK 599
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
+EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ +
Sbjct: 600 ENYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLVILGN 659
Query: 645 SSTICHNTFLARLLRHIR 662
+ + LL H +
Sbjct: 660 PKVLSKHPLWHYLLLHFK 677
>gi|109504000|ref|XP_001070971.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 1
[Rattus norvegicus]
gi|392353861|ref|XP_003751615.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 2
[Rattus norvegicus]
gi|149036014|gb|EDL90680.1| rCG38820 [Rattus norvegicus]
Length = 1113
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 479 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 538
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 539 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 587
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 588 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 640
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 641 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 698
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 699 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 747
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 748 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 806
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 807 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 866
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 867 IVGNPKALSKQPLWNHLLSYYK 888
>gi|429860740|gb|ELA35464.1| ATP-dependent helicase nam7 [Colletotrichum gloeosporioides Nara
gc5]
Length = 1088
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 214/437 (48%), Gaps = 55/437 (12%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT II + +VLV AP+N AVD + E++ GL +VR+
Sbjct: 464 PLSLIQGPPGTGKTVTSATIIYHLCKMNNGQVLVCAPSNVAVDQLCERIHRTGLKVVRLT 523
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+R E V+S + SF+A E+ + +D +L +K L + + +L Q
Sbjct: 524 AKSR-----------EDVESSV-SFLALHEQVRMNDSNGEL---VKLAQLKSELGELSSQ 568
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
K K+ K +++L +A VV T GA DP + ++ +++
Sbjct: 569 DEKKFKQLTKAAERDILHNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPL 628
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
K+ +L GD QL PVI+++KA + G+ SL ER L ++ +L QYRM+ +
Sbjct: 629 VLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVNLR--LVPIRLNIQYRMHPCL 686
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ + S Y GSL + T L D F P + P++ +LG EE +
Sbjct: 687 SEFPSNMFYDGSLQNGVTHRERLRRDVDFPWP--VADMPMMFWS--------NLGNEE-I 735
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-----P 585
+GT S+ N EA V V AGV P I V +PY Q ++ + +
Sbjct: 736 SASGT-SYLNRTEASNVEKVVTRFFKAGVKPGDIGVITPYEGQRSYIVSTMQNTGTFKKE 794
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ +
Sbjct: 795 SYKEVEVASVDAFQGREKDFIVLSCVRSNDNQGIGFLSDPRRLNVALTRAKYGLVIIGNP 854
Query: 646 STICHNTFLARLLRHIR 662
+ + LL H +
Sbjct: 855 KVLSKHELWHHLLVHFK 871
>gi|410053595|ref|XP_512972.4| PREDICTED: regulator of nonsense transcripts 1 [Pan troglodytes]
Length = 1057
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 213/443 (48%), Gaps = 63/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 484 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 543
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 544 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 592
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 593 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 645
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 646 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 703
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 704 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------G 753
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 754 QEE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 810
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 811 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 870
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 871 IIVGNPKALSKQPLWNHLLNYYK 893
>gi|354544687|emb|CCE41413.1| hypothetical protein CPAR2_304020 [Candida parapsilosis]
Length = 1049
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 213/448 (47%), Gaps = 66/448 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + E++LV AP+N AVD++ KL +GL +VR
Sbjct: 467 QRPLSLIQGPPGTGKTVTSATIVYHLSKLNKEKILVCAPSNVAVDHLAAKLDLLGLKVVR 526
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R + +V +L IV + K +L+K ++ LK++ + +L
Sbjct: 527 LTAKSREDVESSVGHLALHNIVN----------KTSKGELKKLIK--LKNE-----VGEL 569
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
+ K K + + ++L+ VV T GAAD +RL F
Sbjct: 570 SSEDSKKYIKHLRSSELKILNKCDVVCCTCVGAAD---KRLSQFKFRTVLVDESTQASEP 626
Query: 414 ---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
K+ IL GD QL PVIL RKA + G+ SL ER L G + +L QY
Sbjct: 627 EVLIPIVKGAKQVILVGDHQQLGPVILDRKAADAGLKQSLFERLVFL--GHIPIRLEVQY 684
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM+ ++ + S Y GSL T A L+ D+ F P + P++ YG
Sbjct: 685 RMHPCLSEFPSNMFYEGSLQDGVTNADRLVADSSFPWP--VVDTPMMFWAN---YG---- 735
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER---- 580
E L +G S+ N EA V + L G+ P I V +PY Q +L +
Sbjct: 736 --REELSSSG-NSYLNRVEAMNVERIITRLFKDGIKPEQIGVITPYEGQRAYLVQFMSMN 792
Query: 581 ---LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
L E VE+ ++D+FQGRE D +I+S VR+N ++GFL D RR+NVA+TRA
Sbjct: 793 STLLSKRDEYLEVEITSVDAFQGREKDFIILSCVRANDSQSIGFLSDPRRLNVALTRAKY 852
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFG 665
+ V+ + + N LL H R G
Sbjct: 853 GLLVLGNPRALSRNRLWNHLLVHFREKG 880
>gi|126030570|pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
gi|126030579|pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
gi|126030580|pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
gi|126030581|pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 213/443 (48%), Gaps = 63/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 194 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 253
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 254 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 302
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 303 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 355
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 356 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 413
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 414 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------G 463
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 464 QEE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 520
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 521 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 580
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 581 IIVGNPKALSKQPLWNHLLNYYK 603
>gi|344241326|gb|EGV97429.1| Regulator of nonsense transcripts 1 [Cricetulus griseus]
Length = 771
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 137 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 196
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 197 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 245
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 246 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 298
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 299 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 356
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 357 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 405
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 406 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 460
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 461 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 520
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 521 YGVIIVGNPKALSKQPLWNHLLSYYK 546
>gi|315049715|ref|XP_003174232.1| ATP-dependent helicase NAM7 [Arthroderma gypseum CBS 118893]
gi|311342199|gb|EFR01402.1| ATP-dependent helicase NAM7 [Arthroderma gypseum CBS 118893]
Length = 1094
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 142/453 (31%), Positives = 215/453 (47%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + +VLV AP+N AVD
Sbjct: 440 LNSSQINAVKAVLQK--PLSLIQGPPGTGKTVTSATIIYHLAKVNAGQVLVCAPSNVAVD 497
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E + GL VRV +R E V+S + + + +D +L
Sbjct: 498 QLCECIHRTGLKTVRVTAKSR-----------EDVESPVRHLSLHEQVRNNDSNIEL--- 543
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR------- 406
+K + L + +L Q K K+ + KE+L++A V+ T GA DP + +
Sbjct: 544 VKLNQLKTELGELSSQDEKKYKQLTRAAEKEILTNADVICCTCVGAGDPRLAKSKFRTVL 603
Query: 407 ------------LDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
+ L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 604 IDESTQSAEPECMIPLVLGCKQAVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 661
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ ++S Y GSL + + LL + F P + P++
Sbjct: 662 CAPIRLNVQYRMHPCLSQFSSNMFYEGSLQNGVSSEDRLLKNVDFPWP--VADKPMMFWS 719
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS I + +PY Q
Sbjct: 720 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSGIGIITPYEGQR 769
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + +EVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 770 SYVVSSMQLTGTFKKEWYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLN 829
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LLRH +
Sbjct: 830 VALTRAKYGLVILGNPKVLSKHPLWNYLLRHFK 862
>gi|255732109|ref|XP_002550978.1| ATP-dependent helicase NAM7 [Candida tropicalis MYA-3404]
gi|240131264|gb|EER30824.1| ATP-dependent helicase NAM7 [Candida tropicalis MYA-3404]
Length = 993
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 146/449 (32%), Positives = 218/449 (48%), Gaps = 68/449 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + E++LV AP+N AVD++ KL +GL +VR
Sbjct: 444 QRPLSLIQGPPGTGKTVTSATIIYHLSKLNREKILVCAPSNVAVDHLAAKLDLLGLKVVR 503
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R + +V+ +L +V S K +L+K ++ LK+ +
Sbjct: 504 LTARSREDVESSVSHLALHNLVNS----------HAKGELKKLIK--LKNQVGELSVEDT 551
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
K + K L+ E + L+ VV T GAAD +RL F
Sbjct: 552 NKYI-KLLRTSEMK----ALNKCDVVCCTCVGAAD---KRLSQFKFRSVLIDESTQASEP 603
Query: 414 ---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
K+ IL GD QL PVIL RKA + G+ SL ER L G + +L QY
Sbjct: 604 EVLIPIVKGAKQVILVGDHQQLGPVILDRKAADAGLKQSLFERLVFL--GHVPIRLEVQY 661
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM+ ++ + S Y GSL + T L+ D+ F P ++DT + + + +
Sbjct: 662 RMHPCLSEFPSNMFYEGSLQNGVTSDDRLIEDSTF---------PWPVIDTPMMFWA-NY 711
Query: 525 GCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER--- 580
G EE L+ +G S+ N EA V + L G+ P I V +PY Q +L +
Sbjct: 712 GREE---LSASGNSYLNRVEAMNVEKIITKLFKDGIQPEQIGVITPYEGQRAYLVQFMSM 768
Query: 581 ----LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
LD + VE+ ++D+FQGRE D +I+S VR+N ++GFL D RR+NVA+TR+
Sbjct: 769 NSTLLDKRDQYLDVEITSVDAFQGREKDYIILSCVRANDSQSIGFLSDPRRLNVALTRSK 828
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+ ++ + +C N LL H R G
Sbjct: 829 YGLIILGNPRALCRNRLWNHLLIHFREKG 857
>gi|379729756|ref|YP_005321952.1| AAA ATPase [Saprospira grandis str. Lewin]
gi|378575367|gb|AFC24368.1| AAA ATPase [Saprospira grandis str. Lewin]
Length = 637
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 154/502 (30%), Positives = 241/502 (48%), Gaps = 67/502 (13%)
Query: 215 EENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP-----------LLIIQGPPGTG 263
++N L++ E+ L G M F D ++ LN + + ++ GPPGTG
Sbjct: 153 QDNRLSELREILL-GKMPARFQDHRRPGDLGQLNNSQAEAVQQILAAEDVAVVHGPPGTG 211
Query: 264 KTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKS 323
KT L I V++ VLV AP+N A D + E+L+D GLN+VRVGN +R+ V S
Sbjct: 212 KTTTLVAAIKELVKRESPVLVCAPSNPASDLLTERLADQGLNVVRVGNVSRLDEKVLQHS 271
Query: 324 LGEIVKSK--------LASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLK 375
+ I++ + + AE RK ++ +++ Q K L + +
Sbjct: 272 IEGILQERAEMKEVKKMKKEAAELFRKAGKFKRKFGPNERNERRET--YQEAKNLIRHAR 329
Query: 376 KKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDT--------------FDLVGK--RC 417
E +++VLS A + T + + I RR T + + K +
Sbjct: 330 MMEDYVIEKVLSEADAICCTLVSSMNRYIENRRFHTVVIDEAAQALEPACWIAIAKADKV 389
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKE 477
ILAGD QL P + SRKA + G+ ++LLE+A + V L TQYRM++ I ++++
Sbjct: 390 ILAGDPFQLPPTVKSRKAAQKGLSITLLEKAVERLDRV--QLLKTQYRMHEQIMQFSNQY 447
Query: 478 MYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC--EEHLDLAGT 535
Y G L ++ V + L P T P+ +DT GC +E ++ T
Sbjct: 448 FYEGQLQAADFVKNWTLAMRPGGDTT-----PVEFIDT--------AGCSFDEKIN-PET 493
Query: 536 GSFYNEGEAEIV---VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL----DDLPEAA 588
S YN E I+ + H+ S V PS IAV SPY QV+ ++E++ D P+
Sbjct: 494 LSSYNPEEYYILRQHLDHLLSFADKQVRPS-IAVISPYREQVRFMQEQMETDFDHFPDDD 552
Query: 589 GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+FQG+E D V IS+VRSN G +GFL D+RR+NVA+TRA K + ++ DS+T+
Sbjct: 553 ITIDTID-AFQGQERDVVYISLVRSNERGEIGFLKDTRRLNVAMTRARKKLIIIGDSATL 611
Query: 649 CHNTFLARLLRHIRYFGRVKHA 670
+ F + + G+ A
Sbjct: 612 GQHPFYQSFMDYCEKHGKYASA 633
>gi|326479319|gb|EGE03329.1| hypothetical protein TEQG_02362 [Trichophyton equinum CBS 127.97]
Length = 1093
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 142/453 (31%), Positives = 215/453 (47%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + +VLV AP+N AVD
Sbjct: 439 LNSSQINAVKAVLQK--PLSLIQGPPGTGKTVTSATIIYHLAKVNAGQVLVCAPSNVAVD 496
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E + GL VRV +R E V+S + + + +D +L
Sbjct: 497 QLCECIHRTGLKTVRVTAKSR-----------EDVESPVRHLSLHEQVRNNDSNIEL--- 542
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR------- 406
+K + L + +L Q K K+ + KE+L++A V+ T GA DP + +
Sbjct: 543 VKLNQLKTELGELSSQDEKKYKQLTRAAEKEILTNADVICCTCVGAGDPRLAKSKFRTVL 602
Query: 407 ------------LDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
+ L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 603 IDESTQSAEPECMIPLVLGCKQAVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 660
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ ++S Y GSL + + LL + F P + P++
Sbjct: 661 CAPIRLNVQYRMHPCLSQFSSNMFYEGSLQNGVSSEDRLLKNVDFPWP--VADKPMMFWS 718
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS I + +PY Q
Sbjct: 719 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSGIGIITPYEGQR 768
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + +EVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 769 SYVVSSMQLTGTFKKEWYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLN 828
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LLRH +
Sbjct: 829 VALTRAKYGLVILGNPKVLSKHPLWNYLLRHFK 861
>gi|251836854|pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
gi|251836855|pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
gi|251836858|pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 213/443 (48%), Gaps = 63/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 370 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 429
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 430 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 478
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 479 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 531
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 532 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 589
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 590 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------G 639
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 640 QEE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 696
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 697 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 756
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 757 IIVGNPKALSKQPLWNHLLNYYK 779
>gi|159487559|ref|XP_001701790.1| UPF1 protein [Chlamydomonas reinhardtii]
gi|158281009|gb|EDP06765.1| UPF1 protein [Chlamydomonas reinhardtii]
Length = 800
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 210/449 (46%), Gaps = 69/449 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT I+ G +VLV AP+N AVD + K+ GL +VR
Sbjct: 365 QQPLSLIQGPPGTGKTVTSAAIVYHLAHSGTGQVLVAAPSNVAVDQLAHKMDQTGLKVVR 424
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ R E V S + ++ L LR+ L G+ +
Sbjct: 425 LCAKTR-----------EAVASPVEHLTLHYQVHGCVLVGRLRKLLALRGAQGGLNASDE 473
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------------- 411
+ K+L+++ + EVL +A VV T GA DP RL F
Sbjct: 474 KELKSLRRRLE---MEVLENADVVCTTCVGAGDP---RLSHFRFQHVLIDESTQAAEPEC 527
Query: 412 -----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
L K+ IL GD CQL PVI+ +KA E G+ SL ER L GV +L QYRM
Sbjct: 528 LIPMVLGAKQVILVGDHCQLGPVIMCKKAAEAGLCQSLFERLRLL--GVKPIRLQVQYRM 585
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
+ ++ + S Y G+L + + + L VD P+ P P++ + L
Sbjct: 586 HPCLSEFPSNTFYEGTLQNGTGMGERRLAGVDFPWPNP----DKPMMFW--------VQL 633
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL------- 577
G EE A + S+ N EA V V + G+SP+ I V +PY Q H+
Sbjct: 634 GAEE--ISASSTSYLNRTEAAAVEKVVTRFLQNGMSPAQIGVITPYEGQRAHVVSVMVRN 691
Query: 578 -RERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R D E +EV+++D+FQGRE D +++S VRSN ++GFL D RR+NVA+TRA
Sbjct: 692 GTARQDLYKE---IEVSSVDAFQGREKDIIVLSCVRSNEHSSIGFLSDPRRLNVALTRAR 748
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+ V+ + + LL++ + G
Sbjct: 749 FGLVVLGNPRVLSRQPLWNSLLQYFKEHG 777
>gi|348523131|ref|XP_003449077.1| PREDICTED: regulator of nonsense transcripts 1-like [Oreochromis
niloticus]
Length = 1101
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 466 QRPLSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVR 525
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E ++S ++ + D +L+ Q LKD++ L++
Sbjct: 526 LCAKSR-----------EAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGELSSADE 574
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 575 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 627
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 628 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 685
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 686 MHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ--PDKPMFFYVTQ--------- 734
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 735 GQEEIASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 793
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 794 SLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVI 853
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 854 IVGNPKALSKQPLWNNLLNNYK 875
>gi|340721321|ref|XP_003399071.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 1
[Bombus terrestris]
Length = 1119
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 468 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 527
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 528 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 574
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 575 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 631
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 632 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 689
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 690 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPD----KPMFFYVTQ--------G 737
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 738 QEE---IAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 794
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 795 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 854
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 855 IIVGNPKVLSKQPLWNHLL 873
>gi|357044126|ref|ZP_09105810.1| hypothetical protein HMPREF9138_02282 [Prevotella histicola F0411]
gi|355367676|gb|EHG15104.1| hypothetical protein HMPREF9138_02282 [Prevotella histicola F0411]
Length = 632
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 142/449 (31%), Positives = 225/449 (50%), Gaps = 53/449 (11%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q+KA+ L K + ++ GPPGTGKT L E I A+ + +V+V A +N AVD + E
Sbjct: 194 TQEKAVNEVLWAK-DVAVVHGPPGTGKTTTLVEAINEALMRESQVMVCAQSNMAVDWICE 252
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G+N++R+GNP R++ K LG + K + ++ + S +RK +R+ +
Sbjct: 253 KLVDRGINVLRIGNPTRVN----DKMLGFTYERKFEAH-PDYPQLWS-IRKAIRELRNNR 306
Query: 358 SLAA-GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-- 412
+ Q + +L + E E+ A+VV +T GA ++ ++ T +
Sbjct: 307 KRGSESYHQKMDRLKSRATELEIRINTELFDEARVVASTLVGANSRVMEGQKFTTLFIDE 366
Query: 413 --------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R I AGD CQL P + S AL GG+G +L+ER ++ + T
Sbjct: 367 AAQALEAACWIAIRRASRVIFAGDHCQLPPTVKSIAALRGGLGKTLMERIVE-NKPEVVT 425
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRMN+ I ++S Y G ++S+ + ++D P++ +DT
Sbjct: 426 LLKVQYRMNEEIMRFSSDWFYHGQIVSAPQIKYRGILDY---------DNPMVWIDT--- 473
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVV---HHVFSLICAGV---SPSAIAVQSPYVA 572
S L E+ + + N+GEAE+ + F I + V SPY A
Sbjct: 474 --SDELSKEQFV--GESFGRINKGEAELTLKTLQEYFMKIGKQRILDERIDVGVISPYRA 529
Query: 573 QVQHLR----ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
QVQ+LR +R P + + V T+D FQG+E D ++IS+VRSN G +GFL D RRM
Sbjct: 530 QVQYLRSLIKKREFFKPYRSLISVNTVDGFQGQERDVILISLVRSNEEGQIGFLNDLRRM 589
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARL 657
NVAITRA + ++ + +T+ + F +L
Sbjct: 590 NVAITRARMKLIILGNVATLTRHPFYKKL 618
>gi|350406734|ref|XP_003487865.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 1
[Bombus impatiens]
Length = 1119
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 468 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 527
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 528 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 574
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 575 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 631
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 632 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 689
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 690 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPD----KPMFFYVTQ--------G 737
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 738 QEE---IAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 794
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 795 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 854
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 855 IIVGNPKVLSKQPLWNHLL 873
>gi|350406741|ref|XP_003487867.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 3
[Bombus impatiens]
Length = 1108
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 457 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 516
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 517 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 563
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 564 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 620
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 621 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 678
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 679 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPD----KPMFFYVTQ--------G 726
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 727 QEE---IAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 783
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 784 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 843
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 844 IIVGNPKVLSKQPLWNHLL 862
>gi|345491348|ref|XP_003426578.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 3
[Nasonia vitripennis]
Length = 1121
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 469 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 528
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 529 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 575
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 576 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 632
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 633 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 690
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 691 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPD----KPMFFYVTQ--------G 738
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 739 QEE---IAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 795
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 796 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 855
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 856 IIVGNPKVLSKQPLWNHLL 874
>gi|327293656|ref|XP_003231524.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
gi|326466152|gb|EGD91605.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
Length = 1093
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 142/453 (31%), Positives = 215/453 (47%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + +VLV AP+N AVD
Sbjct: 439 LNSSQINAVKAVLQK--PLSLIQGPPGTGKTVTSATIIYHLAKVNAGQVLVCAPSNVAVD 496
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E + GL VRV +R E V+S + + + +D +L
Sbjct: 497 QLCECIHRTGLKTVRVTAKSR-----------EDVESPVRHLSLHEQVRNNDSNIEL--- 542
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR------- 406
+K + L + +L Q K K+ + KE+L++A V+ T GA DP + +
Sbjct: 543 VKLNQLKTELGELSSQDEKKYKQLTRAAEKEILTNADVICCTCVGAGDPRLAKSKFRTVL 602
Query: 407 ------------LDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
+ L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 603 IDESTQSAEPECMIPLVLGCKQAVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 660
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ ++S Y GSL + + LL + F P + P++
Sbjct: 661 CAPIRLNVQYRMHPCLSQFSSNMFYEGSLQNGVSSEDRLLKNVDFPWP--VADKPMMFWS 718
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS I + +PY Q
Sbjct: 719 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSGIGIITPYEGQR 768
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + +EVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 769 SYVVSSMQLTGTFKKEWYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLN 828
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LLRH +
Sbjct: 829 VALTRAKYGLVILGNPKVLSKHPLWNYLLRHFK 861
>gi|302505946|ref|XP_003014930.1| hypothetical protein ARB_06689 [Arthroderma benhamiae CBS 112371]
gi|291178501|gb|EFE34290.1| hypothetical protein ARB_06689 [Arthroderma benhamiae CBS 112371]
Length = 1080
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 142/453 (31%), Positives = 215/453 (47%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + +VLV AP+N AVD
Sbjct: 426 LNSSQINAVKAVLQK--PLSLIQGPPGTGKTVTSATIIYHLAKVNAGQVLVCAPSNVAVD 483
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E + GL VRV +R E V+S + + + +D +L
Sbjct: 484 QLCECIHRTGLKTVRVTAKSR-----------EDVESPVRHLSLHEQVRNNDSNIEL--- 529
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR------- 406
+K + L + +L Q K K+ + KE+L++A V+ T GA DP + +
Sbjct: 530 VKLNQLKTELGELSSQDEKKYKQLTRAAEKEILTNADVICCTCVGAGDPRLAKSKFRTVL 589
Query: 407 ------------LDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
+ L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 590 IDESTQSAEPECMIPLVLGCKQAVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 647
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ ++S Y GSL + + LL + F P + P++
Sbjct: 648 CAPIRLNVQYRMHPCLSQFSSNMFYEGSLQNGVSSEDRLLKNVDFPWP--VADKPMMFWS 705
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS I + +PY Q
Sbjct: 706 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSGIGIITPYEGQR 755
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + +EVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 756 SYVVSSMQLTGTFKKEWYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLN 815
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LLRH +
Sbjct: 816 VALTRAKYGLVILGNPKVLSKHPLWNYLLRHFK 848
>gi|74201543|dbj|BAE28409.1| unnamed protein product [Mus musculus]
Length = 1124
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 139/447 (31%), Positives = 215/447 (48%), Gaps = 71/447 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 490 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 549
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 550 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 598
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + + ++
Sbjct: 599 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAEMQFRSILIDESTQATEPE 651
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 652 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 709
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 710 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------G 759
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 760 QEE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM--- 813
Query: 585 PEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 814 -QFSGSLYTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 872
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 873 RYGVIIVGNPKALSKQPLWNHLLSYYK 899
>gi|340721323|ref|XP_003399072.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 2
[Bombus terrestris]
Length = 1108
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 457 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 516
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 517 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 563
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 564 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 620
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 621 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 678
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 679 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPD----KPMFFYVTQ--------G 726
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 727 QEE---IAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 783
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 784 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 843
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 844 IIVGNPKVLSKQPLWNHLL 862
>gi|383847285|ref|XP_003699285.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 1
[Megachile rotundata]
Length = 1119
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 468 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 527
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 528 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 574
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 575 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 631
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 632 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 689
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 690 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPD----KPMFFYVTQ--------G 737
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 738 QEE---IAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 794
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 795 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 854
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 855 IIVGNPKVLSKQPLWNHLL 873
>gi|198468730|ref|XP_002134102.1| GA29178 [Drosophila pseudoobscura pseudoobscura]
gi|198146545|gb|EDY72729.1| GA29178 [Drosophila pseudoobscura pseudoobscura]
Length = 1209
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 142/457 (31%), Positives = 217/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD
Sbjct: 452 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 510 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRSMETNTELKKL 558
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ T ++L +A V+ T GA D + R+
Sbjct: 559 QQLKDET-----GELSSADEKRYRNLKRGTENQLLEAADVICCTCVGAGDGRLSRIKFTS 613
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 614 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 672
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 673 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 727
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AGV P I + +PY
Sbjct: 728 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGVKPEQIGIITPY 776
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 777 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 836
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 837 RRLNVALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYK 873
>gi|195165354|ref|XP_002023504.1| GL20400 [Drosophila persimilis]
gi|194105609|gb|EDW27652.1| GL20400 [Drosophila persimilis]
Length = 879
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 142/457 (31%), Positives = 217/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD
Sbjct: 122 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVD 179
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 180 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRSMETNTELKKL 228
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ T ++L +A V+ T GA D + R+
Sbjct: 229 QQLKDET-----GELSSADEKRYRNLKRGTENQLLEAADVICCTCVGAGDGRLSRIKFTS 283
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 284 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 342
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 343 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 397
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AGV P I + +PY
Sbjct: 398 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGVKPEQIGIITPY 446
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 447 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 506
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 507 RRLNVALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYK 543
>gi|418667848|ref|ZP_13229253.1| AAA domain protein [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410756293|gb|EKR17918.1| AAA domain protein [Leptospira interrogans serovar Pyrogenes str.
2006006960]
Length = 634
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 148/482 (30%), Positives = 233/482 (48%), Gaps = 79/482 (16%)
Query: 221 DWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE 280
D ++ G + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +
Sbjct: 175 DSDHFRILGRISTFLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEK 233
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISP-AVAS------------KSLGEI 327
++LV+APTN+A D +VE +S G+ ++R+G+PARI+ A+ S K L E
Sbjct: 234 KILVSAPTNSACDLLVESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLLNEY 293
Query: 328 VKS--KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEV 385
K +++ +F+R + ++ R+ L + +K+L KT++ E + +
Sbjct: 294 RKDVIEISKQAKKFKRNFGEKEREERKKLFTE---------VKELKKTIRSMEIGLIDSL 344
Query: 386 LSSAQVVLATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQL 426
+SS V+++T +A ++ TFD L R ILAGD QL
Sbjct: 345 VSSHPVIVSTPVASARGILEN-RTFDFCVLDESSQALEPTFWIPILKSDRVILAGDHKQL 403
Query: 427 APVILSRKALEGGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLIS 485
P + S K + +L E+A L L TQYRM D I+++ SKE Y G L S
Sbjct: 404 PPTLFSEK---NYLETTLFEKAVENLESYGRIFLLDTQYRMKDEISAFPSKEFYSGLLKS 460
Query: 486 SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS-------- 537
+ + P L + +D +GT S
Sbjct: 461 GRSEKER---------------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDS 499
Query: 538 FYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDS 597
N EA++ V F L I + SPY AQV+ + E+L D+ + V+TIDS
Sbjct: 500 ISNPFEADLQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDS 558
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
FQGRE +++ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L
Sbjct: 559 FQGRENRCILLGFVRSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKL 618
Query: 658 LR 659
+R
Sbjct: 619 IR 620
>gi|345491350|ref|XP_001604124.2| PREDICTED: regulator of nonsense transcripts 1-like isoform 1
[Nasonia vitripennis]
Length = 1105
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 456 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 515
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 516 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 562
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 563 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 619
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 620 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 677
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 678 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPDK----PMFFYVTQ--------G 725
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 726 QEE---IAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 782
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 783 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 842
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 843 IIVGNPKVLSKQPLWNHLL 861
>gi|407927468|gb|EKG20360.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 1086
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 137/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II + G +VLV AP+N AVD + E++ GL VR
Sbjct: 451 QKPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVR 510
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L K + L + + +L
Sbjct: 511 VTAKSR-----------EDVESPVGFLSLHEQVRMNDTNVELN---KLNQLKSELGELSS 556
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K K+ + +E+L++A V+ T GA DP + +
Sbjct: 557 QDEKKFKQLTRAAEREILTNADVICCTCVGAGDPRLAKFKFRTVLIDESTQSAEPECMIP 616
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA + G+ SL ER L G +L QYRM+
Sbjct: 617 LVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--GCAPIRLQVQYRMHPC 674
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T S + + F P + P++ +LG EE
Sbjct: 675 LSEFPSNMFYEGSLQNGVTRESRMRKEVDFPWP--VGDSPMMFWS--------NLGNEE- 723
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA V V AGV P I + +PY Q ++ + + +A G
Sbjct: 724 ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPQDIGIITPYEGQRSYVVQSM----QANG 778
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA +
Sbjct: 779 TFKKENYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLV 838
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL H +
Sbjct: 839 ILGNPKVLSKHPLWHYLLLHFK 860
>gi|66553048|ref|XP_393330.2| PREDICTED: regulator of nonsense transcripts 1 [Apis mellifera]
gi|380015761|ref|XP_003691864.1| PREDICTED: regulator of nonsense transcripts 1-like [Apis florea]
Length = 1119
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 468 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 527
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 528 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 574
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 575 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 631
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 632 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 689
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 690 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPD----KPMFFYVTQ--------G 737
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 738 QEE---IAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 794
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 795 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 854
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 855 IIVGNPKVLSKQPLWNHLL 873
>gi|345491346|ref|XP_003426577.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 2
[Nasonia vitripennis]
Length = 1127
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 469 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 528
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 529 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 575
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 576 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 632
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 633 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 690
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 691 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPD----KPMFFYVTQ--------G 738
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 739 QEE---IAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 795
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 796 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 855
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 856 IIVGNPKVLSKQPLWNHLL 874
>gi|432854578|ref|XP_004067970.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
1-like [Oryzias latipes]
Length = 1093
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 457 QRPLSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVR 516
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E ++S ++ + D +L+ Q LKD++ L++
Sbjct: 517 LCAKSR-----------EAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGELSSADE 565
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 566 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 618
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 619 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 676
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 677 MHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ--PDKPMFFYVTQ--------- 725
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 726 GQEEIASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 784
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 785 SLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVI 844
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 845 IVGNPKALSKQPLWNNLLNNYK 866
>gi|322789964|gb|EFZ15058.1| hypothetical protein SINV_12997 [Solenopsis invicta]
Length = 966
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 313 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 372
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 373 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 419
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 420 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 476
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 477 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 534
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 535 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPD----KPMFFYVTQ--------G 582
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 583 QEE---IAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 639
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 640 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 699
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 700 IIVGNPKVLSKQPLWNHLL 718
>gi|350406738|ref|XP_003487866.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 2
[Bombus impatiens]
Length = 1106
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 455 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 514
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 515 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 561
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 562 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 618
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 619 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 676
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 677 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPDK----PMFFYVTQ--------G 724
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 725 QEE---IAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 781
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 782 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 841
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 842 IIVGNPKVLSKQPLWNHLL 860
>gi|340721325|ref|XP_003399073.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 3
[Bombus terrestris]
Length = 1106
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 455 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 514
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 515 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 561
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 562 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 618
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 619 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 676
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 677 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPDK----PMFFYVTQ--------G 724
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 725 QEE---IAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 781
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 782 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 841
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 842 IIVGNPKVLSKQPLWNHLL 860
>gi|302660352|ref|XP_003021856.1| hypothetical protein TRV_04033 [Trichophyton verrucosum HKI 0517]
gi|291185774|gb|EFE41238.1| hypothetical protein TRV_04033 [Trichophyton verrucosum HKI 0517]
Length = 1080
Score = 182 bits (461), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 142/453 (31%), Positives = 215/453 (47%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + +VLV AP+N AVD
Sbjct: 426 LNSSQINAVKAVLQK--PLSLIQGPPGTGKTVTSATIIYHLAKVNAGQVLVCAPSNVAVD 483
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E + GL VRV +R E V+S + + + +D +L
Sbjct: 484 QLCECIHRTGLKTVRVTAKSR-----------EDVESPVRHLSLHEQVRNNDSNIEL--- 529
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR------- 406
+K + L + +L Q K K+ + KE+L++A V+ T GA DP + +
Sbjct: 530 VKLNQLKTELGELSSQDEKKYKQLTRAAEKEILTNADVICCTCVGAGDPRLAKSKFRTVL 589
Query: 407 ------------LDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
+ L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 590 IDESTQSAEPECMIPLVLGCKQAVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 647
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ ++S Y GSL + + LL + F P + P++
Sbjct: 648 CAPIRLNVQYRMHPCLSQFSSNMFYEGSLQNGVSSEDRLLKNVDFPWP--VADKPMMFWS 705
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS I + +PY Q
Sbjct: 706 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSGIGIITPYEGQR 755
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + +EVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 756 SYVVSSMQLTGTFKKEWYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLN 815
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LLRH +
Sbjct: 816 VALTRAKYGLVILGNPKVLSKHPLWNYLLRHFK 848
>gi|326469176|gb|EGD93185.1| ATP-dependent DNA helicase [Trichophyton tonsurans CBS 112818]
Length = 1064
Score = 182 bits (461), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 142/453 (31%), Positives = 215/453 (47%), Gaps = 55/453 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + +VLV AP+N AVD
Sbjct: 410 LNSSQINAVKAVLQK--PLSLIQGPPGTGKTVTSATIIYHLAKVNAGQVLVCAPSNVAVD 467
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E + GL VRV +R E V+S + + + +D +L
Sbjct: 468 QLCECIHRTGLKTVRVTAKSR-----------EDVESPVRHLSLHEQVRNNDSNIEL--- 513
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR------- 406
+K + L + +L Q K K+ + KE+L++A V+ T GA DP + +
Sbjct: 514 VKLNQLKTELGELSSQDEKKYKQLTRAAEKEILTNADVICCTCVGAGDPRLAKSKFRTVL 573
Query: 407 ------------LDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
+ L K+ +L GD QL PVI+++KA + G+ SL ER L G
Sbjct: 574 IDESTQSAEPECMIPLVLGCKQAVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL--G 631
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ ++S Y GSL + + LL + F P + P++
Sbjct: 632 CAPIRLNVQYRMHPCLSQFSSNMFYEGSLQNGVSSEDRLLKNVDFPWP--VADKPMMFWS 689
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV PS I + +PY Q
Sbjct: 690 --------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPSGIGIITPYEGQR 739
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + +EVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 740 SYVVSSMQLTGTFKKEWYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLN 799
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + + LLRH +
Sbjct: 800 VALTRAKYGLVILGNPKVLSKHPLWNYLLRHFK 832
>gi|148223321|ref|NP_001085862.1| MGC80941 protein [Xenopus laevis]
gi|49116641|gb|AAH73441.1| MGC80941 protein [Xenopus laevis]
Length = 1098
Score = 182 bits (461), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 135/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 463 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 522
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + + +L+ Q LKD++ L++
Sbjct: 523 LCAKSR-----------EAIDSPVSFLALHNQIRNMESMPELQKLQQLKDETGELSSADE 571
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 572 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 624
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 625 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 682
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 683 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 731
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 732 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 790
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 791 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 850
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 851 IVGNPKALSKQPLWNHLLNYYK 872
>gi|194770581|ref|XP_001967370.1| GF21587 [Drosophila ananassae]
gi|190618050|gb|EDV33574.1| GF21587 [Drosophila ananassae]
Length = 1180
Score = 182 bits (461), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 141/457 (30%), Positives = 217/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD
Sbjct: 452 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 510 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRNMETNSELKKL 558
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ T ++L +A V+ T GA D + R+
Sbjct: 559 QQLKDET-----GELSSADEKRYRSLKRGTENQLLEAADVICCTCVGAGDGRLSRIKFTS 613
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 614 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 672
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 673 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 727
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AG+ P I + +PY
Sbjct: 728 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY 776
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 777 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 836
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 837 RRLNVALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYK 873
>gi|383847287|ref|XP_003699286.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 2
[Megachile rotundata]
Length = 1106
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 455 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 514
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 515 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 561
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 562 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 618
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 619 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 676
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++ + S Y GSL + L +D P+ P P+ T+ G
Sbjct: 677 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWPAPDK----PMFFYVTQ--------G 724
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
EE +AG+G S+ N EA V + GV P I V +PY Q +L + +
Sbjct: 725 QEE---IAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPYEGQRAYLVQYMQYQ 781
Query: 585 PEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 782 GSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGI 841
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 842 IIVGNPKVLSKQPLWNHLL 860
>gi|189207819|ref|XP_001940243.1| DNA-binding protein SMUBP-2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976336|gb|EDU42962.1| DNA-binding protein SMUBP-2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1079
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 138/442 (31%), Positives = 211/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II + + +VLV AP+N AVD + E++ GL VR
Sbjct: 453 QKPLSLIQGPPGTGKTVTSATIIYHLCKISQSQVLVCAPSNVAVDQLCERIHLTGLKTVR 512
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L K + L + + +L
Sbjct: 513 VTAKSR-----------EDVESPVGFLSLHEQVRMNDTNVELN---KLNQLKSDVGELSS 558
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K K+ + +E+L +A V+ T GA DP + ++
Sbjct: 559 QDEKKFKQLTRAAEREILMAADVICCTCVGAGDPRLSKMKFRTVLIDESTQSAEPECMIP 618
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA G+ SL ER L G +L QYRM+
Sbjct: 619 LVLGCKQVVLVGDHQQLGPVIMNKKAATAGLNQSLFERLVIL--GCSPIRLQVQYRMHPC 676
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T+ + D F P + P++ +LG EE
Sbjct: 677 LSEFPSNMFYEGSLQNGVTMQERIRRDVDFPWP--VVDSPMMFWS--------NLGAEE- 725
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA+ V V AGV P I + +PY Q ++ + +A G
Sbjct: 726 ISASGT-SYLNRTEAQNVEKIVTRFFKAGVQPGDIGIITPYEGQRSYVVSSM----QATG 780
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VEVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 781 SFKKENYKEVEVASVDAFQGREKDFIILSCVRSNDHQGIGFLSDPRRLNVALTRAKYGLV 840
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL H +
Sbjct: 841 ILGNPKVLSKHPLWHYLLLHFK 862
>gi|452824582|gb|EME31584.1| dynamin GTPase [Galdieria sulphuraria]
Length = 1012
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 150/468 (32%), Positives = 216/468 (46%), Gaps = 69/468 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKT-----------GLLKEIIARAVQQ--GER 281
+ SQK A+ L + PL ++QGPPGTGKT +K I R + +
Sbjct: 441 LNPSQKAAVKAAL--ESPLSLVQGPPGTGKTVTSATIVYHLANNVKNITQRQKTRKCSRQ 498
Query: 282 VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER 341
+LV AP+N AVD + EK+S GLN+VR+ +R AV+S + KL R
Sbjct: 499 ILVCAPSNIAVDQLAEKISCTGLNVVRLCAKSR--EAVSSSVDHLTLHQKL--------R 548
Query: 342 KKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
+S + + +K L + +L ++ K L+ ++ +E+L S V+ T T A D
Sbjct: 549 NRSSNNPNATELVKLIQLHEELGELNERDDKRLRTLKRNFEREILESMDVICCTCTTAGD 608
Query: 402 PLIRRLDTFDLVG----------------------KRCILAGDQCQLAPVILSRKALEGG 439
RR+ F K+ + GD CQL PV+ S+ A + G
Sbjct: 609 ---RRIAHFRFRAVLIDEATQATEPESLLPLIHGCKQVVFVGDHCQLGPVVTSKTAAKAG 665
Query: 440 IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
G SL ER L G+ +LT QYRM+ ++ + S Y GSL + T A F
Sbjct: 666 FGQSLFERLVAL--GIRPLRLTIQYRMHPSLTEFPSNMFYEGSLQNGITAAERKPSSVSF 723
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGV 559
P + P P E + +GT SF N EA+ V V + GV
Sbjct: 724 PWP--VAAKPFFFYVQTGP---------EEVSASGT-SFLNRVEADAVEKIVSHFLKNGV 771
Query: 560 SPSAIAVQSPYVAQ----VQH-LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
P I V +PY Q VQH LR L +EVA++D+FQGRE D +I+S VRSN
Sbjct: 772 DPQRIGVITPYEGQRAFIVQHFLRSGTMRLELYKEIEVASVDAFQGREKDFIILSCVRSN 831
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+GFL D RR+NVA+TRA + ++ + + A LL+H +
Sbjct: 832 EHQGIGFLSDPRRLNVALTRARFGLIILGNPKVLAKKWLWACLLQHCK 879
>gi|307207583|gb|EFN85248.1| Regulator of nonsense transcripts 1 [Harpegnathos saltator]
Length = 1108
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 141/441 (31%), Positives = 212/441 (48%), Gaps = 59/441 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD + EK+ L +VR
Sbjct: 455 QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVR 514
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + K + +L+ Q LKD++ + +
Sbjct: 515 LCAKSR-----------EAIDSPVSFLALHNQIKNMETNTELQKLQQLKDET--GELSSV 561
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 562 DEKRYRLLKKAAE---KELLEAADVICCTCVGAGDPRLHRLKFHSILIDESMQATEPECM 618
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 619 VPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPFRLEVQYRMH 676
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
++ + S Y GSL + L+ F P + P+ T+ G E
Sbjct: 677 PDLSRFPSNFFYEGSLQNGVCADERKLLKIDFPWP--VQDKPMFFYVTQ--------GQE 726
Query: 528 EHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQHLRERLD 582
E +AG+G S+ N EA V + GV I V +PY Q VQH++ +
Sbjct: 727 E---IAGSGTSYLNRTEASNVEKITTRFLRCGVKSEQIGVITPYEGQRAFLVQHMQYQGS 783
Query: 583 DLPE-AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAV 641
+ +EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA + +
Sbjct: 784 LHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGIII 843
Query: 642 VCDSSTICHNTFLARLLRHIR 662
V + + LL +
Sbjct: 844 VGNPKVLSKQALWNHLLNFYK 864
>gi|330918442|ref|XP_003298225.1| hypothetical protein PTT_08860 [Pyrenophora teres f. teres 0-1]
gi|311328707|gb|EFQ93678.1| hypothetical protein PTT_08860 [Pyrenophora teres f. teres 0-1]
Length = 1079
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 138/442 (31%), Positives = 211/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT II + + +VLV AP+N AVD + E++ GL VR
Sbjct: 453 QKPLSLIQGPPGTGKTVTSATIIYHLCKISQSQVLVCAPSNVAVDQLCERIHLTGLKTVR 512
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E V+S + + + +D +L K + L + + +L
Sbjct: 513 VTAKSR-----------EDVESPVGFLSLHEQVRMNDTNVELN---KLNQLKSDVGELSS 558
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
Q K K+ + +E+L +A V+ T GA DP + ++
Sbjct: 559 QDEKKFKQLTRAAEREILMAADVICCTCVGAGDPRLSKMKFRTVLIDESTQSAEPECMIP 618
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ +L GD QL PVI+++KA G+ SL ER L G +L QYRM+
Sbjct: 619 LVLGCKQVVLVGDHQQLGPVIMNKKAATAGLNQSLFERLVIL--GCSPIRLQVQYRMHPC 676
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y GSL + T+ + D F P + P++ +LG EE
Sbjct: 677 LSEFPSNMFYEGSLQNGVTMQERIRRDVDFPWP--VVDSPMMFWS--------NLGAEE- 725
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+ +GT S+ N EA+ V V AGV P I + +PY Q ++ + +A G
Sbjct: 726 ISASGT-SYLNRTEAQNVEKIVTRFFKAGVQPGDIGIITPYEGQRSYVVSSM----QATG 780
Query: 590 ---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VEVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 781 SFKKENYKEVEVASVDAFQGREKDFIILSCVRSNEHQGIGFLSDPRRLNVALTRAKYGLV 840
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ + + + LL H +
Sbjct: 841 ILGNPKVLSKHPLWHYLLLHFK 862
>gi|441501354|ref|ZP_20983473.1| putative helicase [Fulvivirga imtechensis AK7]
gi|441434890|gb|ELR68315.1| putative helicase [Fulvivirga imtechensis AK7]
Length = 641
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 146/497 (29%), Positives = 235/497 (47%), Gaps = 107/497 (21%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
++SQ KA+ L L+ + II GPPGTGKT L + I ++ ++ LV AP+NAAVD
Sbjct: 186 LNESQNKALNLVLSAT-DVAIIHGPPGTGKTTTLIQAILETLKIEKQTLVCAPSNAAVDL 244
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+ ++L + G+N++R+G+PAR++ ++LG+ + ++ K D K+L+
Sbjct: 245 LADRLGEQGVNVLRIGHPARVT----EETLGKTLDVRIT--------KHPDY-KNLKALR 291
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSA----------------------QVV 392
K A R + K+ + E+E K +L+ A QV+
Sbjct: 292 KQ---AEEYRSMGKKYKRHFGYAEREQRKRLLTEARALYDEADHLSFYITSDIIAKSQVI 348
Query: 393 LATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSR 433
T GA +++ + F+ V R I AGD CQL P I S
Sbjct: 349 ACTMVGANSAMLKGMH-FNTVFMDEAAQALEPASWIPIIKADRVIFAGDHCQLPPTIKSF 407
Query: 434 KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
+A G+ ++L E+A ++ + L QYRMN I +++S+ Y L+++ TVA
Sbjct: 408 EAARNGLEITLFEKAIKQNQADVM--LEEQYRMNMDIMNFSSRIFYKNRLVANQTVAH-- 463
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF----------YNEGE 543
W ++ G ++ E +D AG G F +N E
Sbjct: 464 ----------W-----------KIFEGDQTV---EFIDTAGCGFFEDVDPETMSSFNTEE 499
Query: 544 AEIVVHHVFSLI------CAGVSPSAIAVQSPYVAQVQHLRERLD----DLPEAAGVEVA 593
AE+++ H I +I + +PY AQV L++ + D + V
Sbjct: 500 AELLLRHFRQYIEEIKALEKFEEVESIGIIAPYKAQVSLLQDLVQQSNFDEQLVNKLTVN 559
Query: 594 TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTF 653
T+DSFQG+E D + I++VRSN G +GFL ++RRMNVAITRA K + ++ DS+TI N F
Sbjct: 560 TVDSFQGQERDIIYITLVRSNEKGEIGFLANTRRMNVAITRARKKLVIIGDSATIGQNEF 619
Query: 654 LARLLRHIRYFGRVKHA 670
+ L ++ G + A
Sbjct: 620 YSAFLDYVNEIGAYRSA 636
>gi|213408485|ref|XP_002175013.1| ATP-dependent helicase NAM7 [Schizosaccharomyces japonicus yFS275]
gi|212003060|gb|EEB08720.1| ATP-dependent helicase NAM7 [Schizosaccharomyces japonicus yFS275]
Length = 926
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 152/468 (32%), Positives = 226/468 (48%), Gaps = 68/468 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ----GERVLVTAPTNAAVDNMVEKLSDVGLNI 306
+PL +IQGPPGTGKT I+ Q G VLV AP+N AVD + EK+ GL +
Sbjct: 409 QPLSLIQGPPGTGKTVTSASIVYHLATQTKGNGSAVLVCAPSNVAVDQLAEKIHQTGLRV 468
Query: 307 VRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIR 364
VRV +R I V+ SL E VK+ + EF R L K L+ + + SLA R
Sbjct: 469 VRVTAKSREDIDSPVSFLSLHEQVKNYEGN--EEFSR----LLK-LQNDVGELSLADEKR 521
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD---------------- 408
L+ L ++++ E+L SA V+ T GA D + +L
Sbjct: 522 --LRVLVASIER-------ELLQSANVICCTCVGAGDKRVSKLRFRAVLIDEATQASEPE 572
Query: 409 ---TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
V K+ +L GD QL PV++++KA + G+ SL ER L G +LT QYR
Sbjct: 573 CMIPLTHVYKQVVLVGDHQQLGPVVMNKKAAQAGLSQSLFERLIIL--GNSPIRLTVQYR 630
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHL--LVDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
M+ ++ + S Y G+L + T A L +D P+ +P + PL+ Y +
Sbjct: 631 MHPCLSEFPSNMFYEGTLQNGVTTAERLARYLDFPWPQP----EEPLMF------YANFG 680
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD- 582
+E + +GT S+ N EA V AGV+P I + +PY Q ++ + +
Sbjct: 681 ---QEEISASGT-SYLNRTEASTCEKIVTQFFKAGVTPEQIGIITPYDGQRSYIVQYMQN 736
Query: 583 ------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
DL +A VEVA++D+FQGRE D +I+S VRS+ +GFL + RR+NVA+TRA
Sbjct: 737 NGALKKDLYKA--VEVASVDAFQGREKDFIILSCVRSSEHQGIGFLSEPRRLNVALTRAR 794
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDP 684
V V+ + + + + H R G + + LG+ P
Sbjct: 795 YGVIVLGNPKVLAKHALWYHFIVHCRERGYLVEGPLNNLQKFMLGLAP 842
>gi|410921828|ref|XP_003974385.1| PREDICTED: regulator of nonsense transcripts 1-like [Takifugu
rubripes]
Length = 1099
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 213/443 (48%), Gaps = 63/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 465 QRPLSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVR 524
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E ++S ++ + D +L+ Q LKD++ L++
Sbjct: 525 LCAKSR-----------EAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGELSSADE 573
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 574 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 626
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 627 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 684
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T + F P + P+ T+ G
Sbjct: 685 MHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQ--PEKPMFFYVTQ--------G 734
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 735 QEE---IASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 791
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 792 GSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGV 851
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 852 IIVGNPKALSKQPLWNNLLNNYK 874
>gi|410924489|ref|XP_003975714.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 1
[Takifugu rubripes]
Length = 1111
Score = 181 bits (460), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 461 QRPLSLIQGPPGTGKTVTSATIVYHLARQGSGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 520
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + + +L+ Q LKD++ L++
Sbjct: 521 LCAKSR-----------EAIDSPVSFLALHNQTRNMESMPELQKLQQLKDETGELSSSDE 569
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 570 KRYRALRRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 622
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 623 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 680
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 681 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 729
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 730 GQEEIASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 784
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 785 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 844
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 845 YGVIIVGNPKALSKQPLWNHLLNYYK 870
>gi|418696259|ref|ZP_13257268.1| AAA domain protein [Leptospira kirschneri str. H1]
gi|421107423|ref|ZP_15567975.1| AAA domain protein [Leptospira kirschneri str. H2]
gi|409955788|gb|EKO14720.1| AAA domain protein [Leptospira kirschneri str. H1]
gi|410007439|gb|EKO61149.1| AAA domain protein [Leptospira kirschneri str. H2]
Length = 631
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 224/462 (48%), Gaps = 58/462 (12%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTFLNESQKNAVVHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG-EIVKSKLASFVAEFERKKSDLR 347
N+A D +VE + G++++R+G+PAR++ +L ++ + E+ + ++
Sbjct: 242 NSACDLLVESILARGISVLRLGHPARVNEIAIHSTLDYKLFHHPDGKLLNEYRKDVIEIS 301
Query: 348 KDLRQCL-----KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
K ++ K+ + +K+L KT++ E + ++SS V+++T +A
Sbjct: 302 KQAKKFKRNFGEKEREERKNLFMEVKELKKTIRSMEIGLIDSLVSSHPVIVSTPVASARG 361
Query: 403 LIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVS 443
++ TFD L R ILAGD QL P + S K + +
Sbjct: 362 ILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK---NSLETT 417
Query: 444 LLERAAT-LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
L E+AA L L TQYRM + I S+ SKE Y L S + PF
Sbjct: 418 LFEKAAERLESHGRVFLLDTQYRMKEEIVSFPSKEFYSDILKSGRPEKERIPETFPFSNA 477
Query: 503 -TWI----TQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA 557
WI T ++LD S N EA++ V F L
Sbjct: 478 FQWIDTSGTDSEEVILD---------------------DSISNPFEADLQVRLCFLLKEN 516
Query: 558 GVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
I + SPY AQV+ + E+L D+ + V+TIDSFQGRE +++ VRSN G
Sbjct: 517 DWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGRENRCILLGFVRSNLEG 575
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 576 RSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 617
>gi|410924491|ref|XP_003975715.1| PREDICTED: regulator of nonsense transcripts 1-like isoform 2
[Takifugu rubripes]
Length = 1122
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 472 QRPLSLIQGPPGTGKTVTSATIVYHLARQGSGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 531
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + + +L+ Q LKD++ L++
Sbjct: 532 LCAKSR-----------EAIDSPVSFLALHNQTRNMESMPELQKLQQLKDETGELSSSDE 580
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 581 KRYRALRRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 633
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 634 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 691
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 692 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 740
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 741 GQEEIASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 795
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 796 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 855
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 856 YGVIIVGNPKALSKQPLWNHLLNYYK 881
>gi|333038075|gb|AEF13567.1| hypothetical protein PICST_73544 [Scheffersomyces stipitis CBS
6054]
Length = 1021
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 147/449 (32%), Positives = 214/449 (47%), Gaps = 68/449 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT II + E++LV AP+N AVD++ EKL +GL ++R
Sbjct: 448 QRPLSLIQGPPGTGKTVTSATIIYHLTKLNKEKILVCAPSNVAVDHLAEKLDSLGLKVLR 507
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R + +V+ SL +V K +L+K LR L + +L
Sbjct: 508 LTARSREDVESSVSHLSLHNLVNRT----------AKGELKKLLR-------LRNELGEL 550
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
K+L + + + ++L+ VV T GAAD RRL
Sbjct: 551 SLSDSKSLIRLIRTSESKILAQCDVVCCTCVGAAD---RRLSNIKFRTVLIDESTQASEP 607
Query: 414 ---------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
K+ IL GD QL PVIL +KA + G+ SL ER L G + +L QY
Sbjct: 608 EVLIPIVKGAKQVILVGDHQQLGPVILDKKAGDAGLRQSLFERLVIL--GHVPIRLEVQY 665
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RMN ++ + S Y GSL + T A + + F P + P++ +
Sbjct: 666 RMNPCLSEFPSNIFYEGSLQNGVTSAQRRIESSTFPWPVY--DSPMMFW--------ANY 715
Query: 525 GCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL------ 577
G EE ++G+G S+ N EA V + L GV I V +PY Q +L
Sbjct: 716 GREE---ISGSGNSYLNRVEAMNVEKIITRLFKDGVKAEQIGVITPYEGQRAYLVSYMSI 772
Query: 578 RERLDDLPEAA-GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
L + E VEV ++D+FQGRE D +I+S VR+N+ +GFL D RR+NVA+TRA
Sbjct: 773 NSTLAEFKEQYLEVEVTSVDAFQGREKDYIILSCVRANSSHQIGFLSDPRRLNVALTRAK 832
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+ V+ + +C N +LL H R G
Sbjct: 833 YGLVVLGNPRALCRNRLWNQLLIHFREKG 861
>gi|47216421|emb|CAG01972.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1123
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 215/446 (48%), Gaps = 69/446 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 463 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 522
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + + +L+ Q LKD++ L++
Sbjct: 523 LCAKSR-----------EAIDSPVSFLALHNQTRNMESMPELQKLQQLKDETGELSSSDE 571
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 572 KRYRALRRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 624
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 625 CMVPAVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 682
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 683 MHPALSAFPSNIFYEGSLQNGVTSADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 731
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 732 GQEEIASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 786
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 787 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAR 846
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
V +V + + LL + +
Sbjct: 847 YGVIIVGNPKALSKQPLWNHLLNYYK 872
>gi|195043318|ref|XP_001991595.1| GH11976 [Drosophila grimshawi]
gi|193901353|gb|EDW00220.1| GH11976 [Drosophila grimshawi]
Length = 1276
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 141/457 (30%), Positives = 216/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD
Sbjct: 478 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVD 535
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 536 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRNMETNSELKKL 584
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ T ++L +A V+ T GA D + R+
Sbjct: 585 QQLKDET-----GELSSADEKRYRSLKRATENQLLEAADVICCTCVGAGDVRLSRIKFTS 639
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 640 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 698
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P P+
Sbjct: 699 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----DRPMF 753
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AG+ P I + +PY
Sbjct: 754 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY 802
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 803 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 862
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 863 RRLNVALTRAKYGIIIVGNPKVLSKQQLWNHLLNFYK 899
>gi|321253648|ref|XP_003192804.1| ATP-dependent RNA helicase of the SFI superfamily Nam7p
[Cryptococcus gattii WM276]
gi|317459273|gb|ADV21017.1| ATP-dependent RNA helicase of the SFI superfamily Nam7p
[Cryptococcus gattii WM276]
Length = 1097
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 146/465 (31%), Positives = 220/465 (47%), Gaps = 73/465 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + +VLV AP+N AVD
Sbjct: 453 LNHSQMSAVKAVLQK--PLSLIQGPPGTGKTVTSASIVYHLAKMNPGQVLVCAPSNVAVD 510
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ EK+ GL +VR+ +R E + S + + +D +L++
Sbjct: 511 HLCEKIHQTGLKVVRLAAKSR-----------EALDSSVDFLSLHSQVANADTHHELQKL 559
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPLIRRLDT 409
++ +R +L ++ ++K K V K++L++A V+ T GA DP RL
Sbjct: 560 IQ-------LRNDQGELSQSDERKYKALVRACEKDILNAADVICTTCVGAGDP---RLAK 609
Query: 410 FDL---------------------VG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
F +G K+ +L GD QL PVI+++KA G+ SL ER
Sbjct: 610 FKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARAGLSQSLFER 669
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
L G +L QYRM+ ++ ++S Y G+L + T L + F P +
Sbjct: 670 LVIL--GNHPIRLQVQYRMHPCLSEFSSNLFYEGTLQNGVTAPERLRKNVDFPWP--VAD 725
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P+ +LG EE + +GT SF N EA V V +GV P+ I V
Sbjct: 726 TPMFFHQ--------NLGTEE-ISSSGT-SFLNRTEASNVEKMVTKFFKSGVLPNQIGVI 775
Query: 568 SPYVAQVQHLRERLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+PY Q ++ + DL + VEVA++D+FQGRE D +I+S VRSN +G
Sbjct: 776 TPYEGQRSYIASYMQLHGSLKKDLYKE--VEVASVDAFQGREKDYIILSCVRSNEHQGIG 833
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
FL D RRMNVA+TRA V ++ + + + LL H + G
Sbjct: 834 FLNDPRRMNVALTRAKYGVVILGNPKVLSKHPLWLYLLSHYKEKG 878
>gi|378734810|gb|EHY61269.1| regulator-nonsense transcripts 1 [Exophiala dermatitidis
NIH/UT8656]
Length = 1076
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 147/460 (31%), Positives = 216/460 (46%), Gaps = 69/460 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT II + G +VLV AP+N AVD
Sbjct: 440 LNSSQINAVKSVLQK--PLSLIQGPPGTGKTVTSATIIYHLSKINGGQVLVCAPSNVAVD 497
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL VRV +R E V+S ++ + + +D +L
Sbjct: 498 QLCERIHRTGLKTVRVTAKSR-----------EDVESSVSFLSLHEQVRMNDSNVEL--- 543
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD-- 411
K + L + + +L Q K K + +E+L++A V+ T GA DP RL F
Sbjct: 544 AKLNQLKSELGELSSQDEKKYKSLTRAAEREILTNADVICCTCVGAGDP---RLAKFKFR 600
Query: 412 --------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
L K+ +L GD QL PVI+++KA + G+ SL ER L
Sbjct: 601 TVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVIL 660
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G +L QYRM+ ++ + S Y GSL + T+ L D F P + P++
Sbjct: 661 --GCAPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGVTMQDRLRPDVDFPWP--VADSPMM 716
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+LG EE + +GT S+ N EA V V AGV P +I V +PY
Sbjct: 717 FWS--------NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVHPQSIGVITPYE 766
Query: 572 AQVQHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
Q + + + G +EVA++D+FQGRE D +I+S VRSN +GFL
Sbjct: 767 GQRSFIVSSM----QTNGTFKKELYKEIEVASVDAFQGREKDFIILSCVRSNDHQGIGFL 822
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D RR+NVA+TRA + ++ + + + LL H +
Sbjct: 823 SDPRRLNVALTRAKYGLVILGNPKVLSKHPLWHYLLLHFK 862
>gi|389583252|dbj|GAB65987.1| regulator of nonsense transcripts [Plasmodium cynomolgi strain B]
Length = 1470
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/433 (31%), Positives = 218/433 (50%), Gaps = 58/433 (13%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT ++ + + +VLVTAP+N AVD + ++ GL +VR+
Sbjct: 717 PLSLIQGPPGTGKTLTCATLVYHLSKTKMGKVLVTAPSNVAVDQLSVRIHKTGLKVVRLC 776
Query: 311 NPAR-ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+R P++A + + KSD+ ++L + L+ L + +L ++
Sbjct: 777 AKSREYVPSIAD----------YLYLHNQMKLLKSDIGEELNKLLE---LKEEVGELSQK 823
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
+ LKK ++L A V+ T GA D ++R ++
Sbjct: 824 DERRLKKLIFFAEYKILLEADVICTTCVGAMDKRLKRFRFSQVLVDEATQSTEPECLVPL 883
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
K+ +L GD CQL P+I+ +KA G+G SL ER L G+ +L QYRM+ A+
Sbjct: 884 VTGAKQIVLVGDHCQLGPIIVCKKAANAGLGKSLFERLVML--GITPFRLEVQYRMHPAL 941
Query: 471 ASWASKEMYGGSLISSSTVAS--HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
+ + S Y G L + T+ + L D P+ P +CP+ + S G EE
Sbjct: 942 SEFPSYVFYDGCLQNGITLKEREYPLKDFPWPNP----KCPMFFYN--------STGLEE 989
Query: 529 HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ---VQHLRERLDDLP 585
+ +GT S+ N EA + V +LI G+ P+ I V +PY Q + L ++
Sbjct: 990 -MSASGT-SYLNRAEASNMEKLVRTLINCGLKPTQIGVITPYEGQRAYITSLFQKNISYQ 1047
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
+ +EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA K+ ++C +
Sbjct: 1048 HSTEIEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRRLNVALTRA-KYGLIICGN 1106
Query: 646 STIC--HNTFLAR 656
+ + H+ + R
Sbjct: 1107 AKVLSRHHVMIKR 1119
>gi|418711069|ref|ZP_13271835.1| AAA domain protein [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410768669|gb|EKR43916.1| AAA domain protein [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|456972499|gb|EMG12888.1| AAA domain protein [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 634
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 142/476 (29%), Positives = 230/476 (48%), Gaps = 67/476 (14%)
Query: 221 DWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE 280
D ++ G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +
Sbjct: 175 DSDHFRILGRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEK 233
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---------GEIVKSK 331
++LV+APTN+A D + E +S G+ ++R+G+PARI+ +L G+++ ++
Sbjct: 234 KILVSAPTNSACDLLAESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLL-NE 292
Query: 332 LASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQV 391
V E ++ +++ + K+ +K+L KT++ E + ++SS V
Sbjct: 293 YRKDVIEISKQAKKFKRNFGE--KEREERKKFFTEVKELKKTIRSMEIGLIDSLVSSHPV 350
Query: 392 VLATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILS 432
+++T +A ++ TFD L R ILAGD QL P + S
Sbjct: 351 IVSTPVASARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFS 409
Query: 433 RKALEGGIGVSLLERAA-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
K + +L E+A L L TQYRM D I+++ SKE Y G L S +
Sbjct: 410 EK---NYLETTLFEKAVENLESYGRVFLLDTQYRMKDEISAFPSKEFYSGLLKSGRSEKE 466
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS--------FYNEGE 543
+ P L + +D +GT S N E
Sbjct: 467 R---------------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDSISNPFE 505
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
A++ V F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE
Sbjct: 506 ADLQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGREN 564
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+++ VRSN G GFL +SRR+NV +TRA + + DSST+ + FL++L+R
Sbjct: 565 RCILLGFVRSNLEGRSGFLKESRRINVGMTRARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|412990683|emb|CCO18055.1| ATP-dependent helicase NAM7 [Bathycoccus prasinos]
Length = 1020
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 158/532 (29%), Positives = 240/532 (45%), Gaps = 73/532 (13%)
Query: 160 KSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDL 219
KSV DR Q + + + K H N S V+ G DV+ ++
Sbjct: 394 KSVSYDRCQAALKAFAVDDTSVSGYIYHKLLGHDVNES---VMHHRGSNIDVSGKQK--- 447
Query: 220 ADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
WS L + SQ A+ + L ++PL +IQGPPGTGKT I+ +G
Sbjct: 448 --WSAPNL-----PELNHSQIAAVKMVL--QQPLSLIQGPPGTGKTVTSATIVYHLATKG 498
Query: 280 E-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE 338
+ +V+V AP+N AVD + EK+ GL +VR+ +R E V S +
Sbjct: 499 DGQVIVAAPSNVAVDQLAEKIEKTGLKVVRIVARSR-----------EHVNSAVEHLALH 547
Query: 339 FERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
++ ++ ++ Q K L I +L ++ K K K+ +++ +A VV T G
Sbjct: 548 YQVQRIAEKEKNGQLAKLQRLKDSIGELSQEDEKRYYKALKKIENDIIQNADVVCVTAVG 607
Query: 399 AADPLIRRLDT-------FD---------------LVGKRCILAGDQCQLAPVILSRKAL 436
A D RRL+ FD + K+ ++ GD CQL PV+ R A
Sbjct: 608 AGD---RRLEKYRFRQVLFDESTQATEPETLIPIIMGAKQVVMVGDHCQLGPVVTCRSAS 664
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
G+ SL ER + GV +L QYRM+ ++ + S Y G+L + T A D
Sbjct: 665 RAGLSQSLFERLIFM--GVQPIRLQVQYRMHPCLSEFPSNAFYEGTLQNGVTEAER--AD 720
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLI 555
+ V P P+L +G EE ++ +G S+ N GEA V V L+
Sbjct: 721 SEDVFPWPCPSKPMLFW--------AQMGVEE---MSASGYSYLNRGEAYAVEKIVTHLL 769
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDDL----PE-AAGVEVATIDSFQGREADAVIISM 610
G++P I V +PY Q ++ L P VEVA++D+FQGRE +I++
Sbjct: 770 QNGIAPEEIGVVTPYEGQRAYVVNYLTRTGVLHPSIYQEVEVASVDAFQGREKQYIIVTC 829
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VRSN +GFL D RR+NVA+TRA + +V + + +L+H R
Sbjct: 830 VRSNDRQGIGFLNDPRRLNVALTRAKLGLMIVGNPKVLAKQPLFRDMLQHFR 881
>gi|426230268|ref|XP_004009198.1| PREDICTED: regulator of nonsense transcripts 1 [Ovis aries]
Length = 1341
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 673 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 732
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R + + S ++ + + D +L+ Q LKD++ L++
Sbjct: 733 LCAKSR-----------KAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 781
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 782 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 834
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 835 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 892
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 893 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 941
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 942 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 1000
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 1001 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 1060
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 1061 IVGNPKALSKQPLWNHLLNYYK 1082
>gi|402593133|gb|EJW87060.1| hypothetical protein WUBG_02029 [Wuchereria bancrofti]
Length = 681
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/460 (29%), Positives = 222/460 (48%), Gaps = 52/460 (11%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
++ Q++A+ LNK RP++ I GPPGTGKT ++ EI+ AV + ++VL+ AP+N AV+N
Sbjct: 224 LNEDQRRAVFAALNKSRPIVTIHGPPGTGKTAVIAEIVLEAVSRKQKVLICAPSNVAVNN 283
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+V++L D+ I +G + +S A + + V + A F++ S +
Sbjct: 284 IVDRLKDLA-GICALGFNSELSLAAELEQHDKFVDIQCA-----FKKLDSGESNGISGNN 337
Query: 355 KDDSLAAG--IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR------ 406
D+ A ++L L +T ++SS QV++ T T + +R
Sbjct: 338 HDEHKKAWHDASKMLWHLKET-----------IISSKQVIVCTLTNNSLRFLREHGFQPS 386
Query: 407 LDTFD--------------LVGKRCILAGDQCQLAPVILSRKALE-GGIGVSLLERAATL 451
L D L+ R ++ GD QL PV+ + + LE I SL++
Sbjct: 387 LTVIDEAAQALECVAWYSLLLSPRAVIVGDPWQLPPVLKTSRLLEMDDINNSLMDTLFKR 446
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
+ LT QYRMN I W S Y L + +A LL D V + P++
Sbjct: 447 FGKTNSFMLTEQYRMNKKIMEWPSSFFYQSQLRPNEHIADQLLSDISKVPKGSLFDEPMI 506
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+DT + S E L S+ N E ++++ +V +L GV I + +PYV
Sbjct: 507 FIDTSHDKSARS---NEKL---YRYSYANALEVKLIIKYVTALSMFGVQEKDIGIIAPYV 560
Query: 572 AQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
AQV L++ L V ++D+FQG+E + V++S+VR+N G +GFL D RR NVA
Sbjct: 561 AQVDMLKKSL------KTSRVNSVDAFQGQECEVVVMSLVRNNGDGRIGFLKDERRFNVA 614
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
+TRA + +V + + H L L+ +++ GR+ E
Sbjct: 615 VTRARRQFVLVGSAVMMKHAKHLQSLIEYMQRHGRIIKQE 654
>gi|156096655|ref|XP_001614361.1| regulator of nonsense transcripts [Plasmodium vivax Sal-1]
gi|148803235|gb|EDL44634.1| regulator of nonsense transcripts, putative [Plasmodium vivax]
Length = 1539
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/423 (31%), Positives = 214/423 (50%), Gaps = 56/423 (13%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT ++ + + +VLVTAP+N AVD + ++ GL +VR+
Sbjct: 833 PLSLIQGPPGTGKTLTCATLVYHLSKTKMGKVLVTAPSNVAVDQLSVRIHKTGLKVVRLC 892
Query: 311 NPAR-ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+R P++A + + KSD+ ++L + L+ L + +L ++
Sbjct: 893 AKSREYVPSIAD----------YLYLHNQMKLLKSDIGEELNKLLE---LKEEVGELSQK 939
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
+ LKK ++L A V+ T GA D ++R ++
Sbjct: 940 DERRLKKLIFFAEYKILLEADVICTTCVGAMDKRLKRFRFSQVLVDEATQSTEPECLVPL 999
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
K+ +L GD CQL P+I+ +KA G+G SL ER L G+ +L QYRM+ A+
Sbjct: 1000 VTGAKQIVLVGDHCQLGPIIVCKKAANAGLGKSLFERLVML--GITPFRLEVQYRMHPAL 1057
Query: 471 ASWASKEMYGGSLISSSTVAS--HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
+ + S Y G L + T+ + L D P+ P +CP+ + S G EE
Sbjct: 1058 SEFPSYVFYDGCLQNGITLKEREYPLKDFPWPNP----KCPMFFYN--------STGLEE 1105
Query: 529 HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ---VQHLRERLDDLP 585
+ +GT S+ N EA + V +LI G+ P+ I V +PY Q + L ++
Sbjct: 1106 -MSASGT-SYLNRAEASNMEKLVRTLISCGLKPTQIGVITPYEGQRAYITSLFQKNISYQ 1163
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
+ +EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA K+ ++C +
Sbjct: 1164 HSTEIEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRRLNVALTRA-KYGLIICGN 1222
Query: 646 STI 648
+ +
Sbjct: 1223 AKV 1225
>gi|431799922|ref|YP_007226826.1| type III restriction enzyme, res subunit [Echinicola vietnamensis
DSM 17526]
gi|430790687|gb|AGA80816.1| Type III restriction enzyme, res subunit [Echinicola vietnamensis
DSM 17526]
Length = 643
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 147/465 (31%), Positives = 232/465 (49%), Gaps = 63/465 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+ SQ +A+ + L + + ++ GPPGTGKT + + I ++ +VLV AP+NAAVD
Sbjct: 183 LNHSQVEAVEMVLAAQE-VALVHGPPGTGKTTTMVQAIEETLRSHRQVLVCAPSNAAVDL 241
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASF--VAEFERKKSDLRKDLRQ 352
+VEKL +GL+ +R+G+PAR+ + ++L + ++ +SF + + + + RK R+
Sbjct: 242 LVEKLLAIGLSTLRIGHPARVDDELLEQTLDAKI-AQHSSFRDLKKLRKAAEEYRKLGRK 300
Query: 353 CLKDDSLAAGIRQLLKQL-------GKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIR 405
++ A RQ KQL + + E + +V QV+ T GA P+++
Sbjct: 301 YKRN--FGAAERQQRKQLFAEASKVKEAARHLEDYILYDVFQQNQVIATTLVGANHPVLK 358
Query: 406 RLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLE 446
+ F +V ++ ++AGD CQL P I S +A + G+ +L E
Sbjct: 359 GM-AFPVVFIDEAAQGLEPATWIPVLKAQKIVMAGDHCQLPPTIKSYEAAKDGLSETLFE 417
Query: 447 RAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWIT 506
+ + + L QYRM + I ++S+ Y G L +++ H L V
Sbjct: 418 KVIQ-RQPEASRMLRVQYRMPELIMRFSSEYFYHGQLEAAALTDEHFLGHDERV------ 470
Query: 507 QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA-GVS----- 560
+ +DT GS G EHL+ + S N EA + + L+ GVS
Sbjct: 471 ---MAYIDTA---GS---GFGEHLE-KDSLSKLNTDEARFGLGMLEKLVEKIGVSTFKEK 520
Query: 561 PSAIAVQSPYVAQVQHLRERLDDLPEAAG-------VEVATIDSFQGREADAVIISMVRS 613
I V SPY AQV+ L E +++ E V + TID FQG+E D V+ISMVRS
Sbjct: 521 AFTIGVISPYKAQVKKLAELMEEGSEYENLRQLSDHVTIGTIDGFQGQERDVVLISMVRS 580
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
N G +GFL D+RRMNVA+TRA + + VV DS T+ + F + L
Sbjct: 581 NDEGEIGFLADTRRMNVALTRAKRKLMVVGDSGTLSTHPFYQKFL 625
>gi|45657684|ref|YP_001770.1| hypothetical protein LIC11819 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|421086300|ref|ZP_15547151.1| AAA domain protein [Leptospira santarosai str. HAI1594]
gi|421102415|ref|ZP_15563019.1| AAA domain protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45600924|gb|AAS70407.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|410367529|gb|EKP22913.1| AAA domain protein [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410431865|gb|EKP76225.1| AAA domain protein [Leptospira santarosai str. HAI1594]
Length = 634
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 147/476 (30%), Positives = 232/476 (48%), Gaps = 83/476 (17%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + + ++SQK A+ + + ++II GPPGTGKT L EI+++ V + +++LV+APT
Sbjct: 183 GRISTSLNESQKNAVIHSVLSE-DVMIIHGPPGTGKTTTLTEIVSQLVAEEKKILVSAPT 241
Query: 289 NAAVDNMVEKLSDVGLNIVRVGNPARISP-AVAS------------KSLGEIVKS--KLA 333
N+A D +VE +S G+ ++R+G+PARI+ A+ S K L E K +++
Sbjct: 242 NSACDLLVESISARGILVLRLGHPARINEIAIHSTLDYKLFHHPDGKLLNEYRKDVIEIS 301
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
+F+R + ++ R+ L + +K+L KT++ E + ++SS V++
Sbjct: 302 KQAKKFKRNFGEKEREERKKLFTE---------VKELKKTIRSMEIGLIDSLVSSHPVIV 352
Query: 394 ATNTGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRK 434
+T +A ++ TFD L R ILAGD QL P + S K
Sbjct: 353 STPVASARGILEN-RTFDFCVLDESSQALEPAFWIPILKSDRVILAGDHKQLPPTLFSEK 411
Query: 435 ALEGGIGVSLLERAAT---LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
+ +L E+A L+ V L TQYRM D I+++ SKE Y G L S +
Sbjct: 412 ---NYLETTLFEKAVENLELYGRVFL--LDTQYRMKDEISAFPSKEFYSGLLKSGRSEKE 466
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS--------FYNEGE 543
+ P L + +D +GT S N E
Sbjct: 467 R---------------------KSNFPKTFPFLNAFQWIDTSGTDSEEVILDDSISNPFE 505
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
A++ V F L I + SPY AQV+ + E+L D+ + V+TIDSFQGRE
Sbjct: 506 ADLQVRLCFLLKENDWPEDEITILSPYRAQVRLISEKLRDVG-LTKINVSTIDSFQGREN 564
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+++ VRSN G GFL +SRR+NV + RA + + DSST+ + FL++L+R
Sbjct: 565 RCILLGFVRSNLEGRSGFLKESRRINVGMARARDLLLCIGDSSTLSQDPFLSKLIR 620
>gi|198435823|ref|XP_002122130.1| PREDICTED: similar to regulator of nonsense transcripts 1 [Ciona
intestinalis]
Length = 1094
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 207/418 (49%), Gaps = 66/418 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GER-VLVTAPTNAAVDNMVEKLSDVGLNIV 307
+RPL +IQGPPGTGKT I+ V+ G+R VLV AP+N AVD + EK+ GL +V
Sbjct: 474 QRPLCLIQGPPGTGKTVTSATIVYHLVKSCGQRQVLVCAPSNIAVDQLTEKIHRTGLKVV 533
Query: 308 RVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQ 365
R+ +R I V+ SL V+S + + E ++ Q LKD++ +
Sbjct: 534 RLCAKSREAIDSNVSFLSLHNQVRSMES--LPELQK---------LQQLKDET-----GE 577
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------ 413
L K + ++ +E+L A V+ +T GA DP + R ++
Sbjct: 578 LSSNDEKRYRALKRNAERELLQHADVICSTCVGAGDPRLVRFRFRSILIDESTQATEPEC 637
Query: 414 -------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
++ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM
Sbjct: 638 MVPVVLGAQQLILVGDHCQLGPVVMCKKAANAGLAQSLFERLVVL--GIRPIRLQVQYRM 695
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
+ A++++ S Y GSL + T + + FV P+ P+ T
Sbjct: 696 HPALSAFPSNIFYEGSLQNGVTAGERMRKNLSFVWPS--PDKPMFFYKT---------SG 744
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPE 586
+E + +GT S+ N EA +V + +G+ P I + +PY Q +L + + +
Sbjct: 745 QEEIASSGT-SYLNRTEAAVVERITTKFLKSGIKPEQIGIITPYEGQRSYLVQYM----Q 799
Query: 587 AAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
+G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 800 YSGSLHSKLYMEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 857
>gi|401885778|gb|EJT49866.1| ATP dependent helicase [Trichosporon asahii var. asahii CBS 2479]
Length = 1013
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 153/488 (31%), Positives = 231/488 (47%), Gaps = 84/488 (17%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + +VLV AP+N AVD
Sbjct: 412 LNHSQMAAVKAVLQK--PLSLIQGPPGTGKTVTSASIVYHLSKMNPGQVLVCAPSNVAVD 469
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ EK+ GL +VR+ +R E V S ++ + K+D R++L++
Sbjct: 470 HLAEKIHMTGLKVVRLTAKSR-----------EAVDSPVSYLTLHEQVAKNDTRRELQKL 518
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPLIRRLDT 409
++ +R L +L ++ ++K K V K++L++A V+ T GA DP RL
Sbjct: 519 IQ-------LRNELGELSQSDERKYKSLVRACEKDILNAADVICTTCVGAGDP---RLAK 568
Query: 410 FDL---------------------VG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
F +G K+ +L GD QL PVI+++KA G+ SL ER
Sbjct: 569 FKFRTVLVDEATQAAEPEAMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARAGLSQSLFER 628
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
L G +L QYRM+ ++ + S Y G+L + T L + F P +
Sbjct: 629 LVIL--GNRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWP--VAD 684
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P++ + G EE + +GT SF N EA V V +GV PS I V
Sbjct: 685 TPMMFHQ--------NTGTEE-ISSSGT-SFVNRTEAANVEKMVTKFFKSGVLPSQIGVI 734
Query: 568 SPYVAQVQHLRERLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+PY Q + + DL + VEVA++D+FQGRE D +I+S VRSN +G
Sbjct: 735 TPYEGQRSFIVSYMQLHGALKKDLYKE--VEVASVDAFQGREKDYIILSCVRSNEHQGIG 792
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFL------ARLLRHIRYFGRVK-----H 669
FL D RR+NVA+TRA V ++ + + + + L R + F R + +
Sbjct: 793 FLNDPRRLNVALTRAKYGVVILGNPKVLSKPSMMQFSKPRKTLSRAMESFRRFEPPANDY 852
Query: 670 AEPGSFGG 677
AE + GG
Sbjct: 853 AEKNARGG 860
>gi|406662219|ref|ZP_11070322.1| putative DNA helicase [Cecembia lonarensis LW9]
gi|405553902|gb|EKB49075.1| putative DNA helicase [Cecembia lonarensis LW9]
Length = 659
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/475 (29%), Positives = 235/475 (49%), Gaps = 83/475 (17%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ+ A+ L ++ + + II GPPGTGKT L + + ++QQ +VLV AP+NAAVD +VE
Sbjct: 203 SQQAALQL-VSAAKDVAIIHGPPGTGKTTTLVQAVIGSLQQHAQVLVCAPSNAAVDLLVE 261
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
K+ + G++ +R+G+PAR+ + S++L + + + +KK+D + L Q K
Sbjct: 262 KIREKGISTLRIGHPARVEDHILSQTLDAKITLHDSYKDLKKLKKKADEYRKLGQKYK-R 320
Query: 358 SLAAGIRQLLKQL---GKTLKKK----EKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
S + R K+L LK + E+ + +V QV +T GA++ +++ + F
Sbjct: 321 SFGSEERMQRKRLFDEANRLKDEAEHLEEYIMYDVFQQTQVFASTLVGASNSVLKGM-KF 379
Query: 411 DLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
+V + ++AGD CQL P I S +A + G+ +L E+ T
Sbjct: 380 PIVFIDEAAQGLEAASWIPIQKALKVVMAGDHCQLPPTIKSYEAAKAGLSETLFEK-VTK 438
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
+ + L QYRM + I +++K Y L ++ SH L + P+L
Sbjct: 439 RQPQVTKMLQLQYRMPELIMGFSNKIFYQNELGAAKNTESHFLSEGE----------PVL 488
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG----------SFYNEGEAEIVVHHVFSLIC-AGVS 560
E +D AG+G S +N+ EA + ++ L+ G++
Sbjct: 489 ----------------EFIDTAGSGFVEAIEEESLSTFNQEEARFALQYLEDLLKRTGIA 532
Query: 561 P-----SAIAVQSPYVAQVQHLRE---------RLDDLPEAAGVEVATIDSFQGREADAV 606
I + +PY AQV+ E L PE ++ +ID FQG+E D +
Sbjct: 533 KIKEKRWTIGLIAPYRAQVRKFNELLFESYAFPNLRSFPELLTID--SIDGFQGQERDII 590
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+IS+VRSN G +GFL D+RRMNVA+TRA + + V+ DS+T+ H++F ++
Sbjct: 591 LISLVRSNAKGEIGFLADTRRMNVALTRAKRKLVVIGDSATLSHHSFYNAFFDYV 645
>gi|160889253|ref|ZP_02070256.1| hypothetical protein BACUNI_01675 [Bacteroides uniformis ATCC 8492]
gi|156861260|gb|EDO54691.1| putative DNA helicase [Bacteroides uniformis ATCC 8492]
Length = 637
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 140/458 (30%), Positives = 220/458 (48%), Gaps = 76/458 (16%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+G
Sbjct: 211 RDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWISEKLVDRGVNVLRIG 270
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSD---------LRKDLRQCLKDDSLAA 361
NP R V K+ SF +ER+ + +RK+LR+ +
Sbjct: 271 NPTR-------------VNDKMLSFT--YERRFENHPLYPELWSIRKNLRELGSRARRGS 315
Query: 362 -----GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-- 412
G+R + +L E + E+ A V+ +T + L+ RR T +
Sbjct: 316 YDEREGVRSRMSRLRDRATALEIQINSELFDGAHVIASTLVSSNHRLLNGRRFGTLFIDE 375
Query: 413 --------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R +LAGD CQL P I +A GG+ +L+E+ + V++
Sbjct: 376 AAQALEAACWIAIRKADRVVLAGDHCQLPPTIKCYEAARGGLERTLMEKVVSNKPAVVSL 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRM++ I + S+ Y G L ++S V ++D W T P+ +DT
Sbjct: 436 -LKVQYRMHEEIMKFPSQWFYNGELEAASEVRYRGILD-------WDT--PIHWIDTS-- 483
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYV 571
+ +E + T N+ EA++++ + + +S + I + SPY
Sbjct: 484 ----EMDFKEEF-VGETFGRINKAEADLLLSEL-KIYINRISGNRILEEKIDFGIISPYK 537
Query: 572 AQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
AQVQ+LR ++ P + V T+D FQG+E D + IS+VR+N G +GFL D RR
Sbjct: 538 AQVQYLRNKIKADASLKPYRSLFTVNTVDGFQGQERDVIFISLVRANEEGQIGFLNDLRR 597
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
MNVAITRA + ++ ++ T+ H+ F +LL I+ G
Sbjct: 598 MNVAITRARMKLVILGEAETLKHHGFYRKLLEFIQNIG 635
>gi|268569138|ref|XP_002640442.1| C. briggsae CBR-SMG-2 protein [Caenorhabditis briggsae]
Length = 1051
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 220/458 (48%), Gaps = 66/458 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ +A+ L RPL +IQGPPGTGKT + I+ VQ+ E VLV +P+N AVD
Sbjct: 441 LNSSQSQAVKQVLT--RPLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVD 498
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ EK+ GL +VR+ +R L ++ +L +K L++++ +
Sbjct: 499 HLAEKIHKTGLKVVRLCARSREHSETTVPHL--TLQHQLKVLGGPELKKLIQLKEEIGEL 556
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
D L RQL K+ KE E+L++A V+ T + AAD + ++ T ++
Sbjct: 557 ESKDDLR--YRQL---------KRVKE--HELLAAADVICCTCSSAADARLSKIRTRTVL 603
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
++ +L GD CQL PV++ +KA G+ SL ER L G
Sbjct: 604 IDESTQATEPEILVSIVRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL--G 661
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPF---VKPTWITQCP 509
+ +L QYRM+ ++ + S Y GSL + T + +D + KP + C
Sbjct: 662 IRPFRLQVQYRMHPVLSEFPSNAFYDGSLQNGVTENERQMKGIDWSWPTPSKPAFFWHCS 721
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
G EE L +GT SF N EA V V LI GV P I V +P
Sbjct: 722 ---------------GAEE-LSASGT-SFLNRTEAANVEKLVSKLIKGGVEPRQIGVITP 764
Query: 570 YVAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
Y Q + + + GVE+A++D+FQGRE D +I++ VRSN + +GFL D
Sbjct: 765 YEGQRSFIVNYMQTQGTLNSKLYEGVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSD 824
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVAITRA + VV ++ + + L+ H +
Sbjct: 825 PRRLNVAITRAKYGIVVVGNAKVLSRHELWYELINHYK 862
>gi|189234959|ref|XP_973320.2| PREDICTED: similar to nonsense-mediated mrna decay protein 1
(rent1) [Tribolium castaneum]
Length = 1090
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 218/453 (48%), Gaps = 61/453 (13%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD +
Sbjct: 445 SQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLT 502
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCL 354
EK+ L +VR+ +R E + S ++ + +K + +L+ Q L
Sbjct: 503 EKIHKTNLKVVRLCAKSR-----------EAIDSPVSFLALHNQIRKMEANTELQKLQQL 551
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
KD++ + + ++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 552 KDET--GELSSVDEKRYRMLKKLAE---KELLEAADVICCTCVGAGDPRLVRLKFHSILI 606
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
K+ IL GD CQL PV++ +KA G+ SL ER L G+
Sbjct: 607 DESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GI 664
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
+L QYRM+ ++ + S Y GSL + L F P ++D
Sbjct: 665 RPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCADERKLNKIDF---------PWPVID- 714
Query: 516 RLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
R + ++ G EE +AG+G S+ N EA V + +GV P I V +PY Q
Sbjct: 715 RPMFFHVTQGQEE---IAGSGTSYLNRTEAANVEKIATRFLRSGVKPEQIGVITPYEGQR 771
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
+L + + +E+A++D+FQGRE D +I+S VRSN +GFL D RR+N
Sbjct: 772 AYLVQYMQYQGSLHSKTYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLN 831
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + +V + + LL +
Sbjct: 832 VALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYK 864
>gi|270001378|gb|EEZ97825.1| hypothetical protein TcasGA2_TC000192 [Tribolium castaneum]
Length = 1095
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 218/453 (48%), Gaps = 61/453 (13%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD +
Sbjct: 450 SQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLT 507
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCL 354
EK+ L +VR+ +R E + S ++ + +K + +L+ Q L
Sbjct: 508 EKIHKTNLKVVRLCAKSR-----------EAIDSPVSFLALHNQIRKMEANTELQKLQQL 556
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
KD++ + + ++ + LKK + KE+L +A V+ T GA DP + RL ++
Sbjct: 557 KDET--GELSSVDEKRYRMLKKLAE---KELLEAADVICCTCVGAGDPRLVRLKFHSILI 611
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
K+ IL GD CQL PV++ +KA G+ SL ER L G+
Sbjct: 612 DESMQATEPECMVPVVLGVKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GI 669
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
+L QYRM+ ++ + S Y GSL + L F P ++D
Sbjct: 670 RPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCADERKLNKIDF---------PWPVID- 719
Query: 516 RLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
R + ++ G EE +AG+G S+ N EA V + +GV P I V +PY Q
Sbjct: 720 RPMFFHVTQGQEE---IAGSGTSYLNRTEAANVEKIATRFLRSGVKPEQIGVITPYEGQR 776
Query: 575 QHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
+L + + +E+A++D+FQGRE D +I+S VRSN +GFL D RR+N
Sbjct: 777 AYLVQYMQYQGSLHSKTYQEIEIASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDPRRLN 836
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + +V + + LL +
Sbjct: 837 VALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYK 869
>gi|294875682|ref|XP_002767434.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239869001|gb|EER00152.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 559
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 226/469 (48%), Gaps = 70/469 (14%)
Query: 217 NDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV 276
N +W+ L + + SQ +A+ L ++PL +IQGPPGTGKT II
Sbjct: 3 NPPKNWTAPNLPQL-----NHSQVQAVQKAL--EQPLSLIQGPPGTGKTVTSATIIYHLA 55
Query: 277 QQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLA 333
+Q + +VLVTAP+N AVD + EK+ GL +VR+ +R + V SL +++
Sbjct: 56 RQHQGQVLVTAPSNIAVDQLAEKIHLTGLKVVRILAKSRECLYSPVEFLSLHTQIRNMRT 115
Query: 334 SFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
EF +K DL++++ + D K + + +E+L +A V+
Sbjct: 116 PQAKEF-KKLFDLKEEVGELTSSDE-------------KRFRILRSQVERELLENADVIC 161
Query: 394 ATNTGAADPLIRRLDTFDLV--------------------GKRCILAGDQCQLAPVILSR 433
T GA DP + +L F +V K+ IL GD QL PV++ +
Sbjct: 162 TTCAGAGDPRLGKL-RFKMVLVDEATQACEPEALIPICNGAKQVILVGDHKQLGPVVMCK 220
Query: 434 KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
KA + G SL ER L GV +L QYRM+ ++A + S+ Y G L + T+
Sbjct: 221 KAAKAGFKQSLFERLIAL--GVRPIRLEVQYRMHPSLAEFPSQTFYDGCLQNGITMEDRQ 278
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFS 553
+ F P + P+ + S G EE + +GT S+ N EA + +
Sbjct: 279 VSGVKFPWPR--EEMPMFFYN--------STGQEE-ISASGT-SYLNRSEAINIEKIITY 326
Query: 554 LICAGVSPSAIAVQSPYVAQ---VQHLRERLDDLPEAA--GVEVATIDSFQGREADAVII 608
+ AG+ S I V +PY Q +Q + +R L +E+A++D+FQGRE D +++
Sbjct: 327 FLRAGLKGSQIGVVTPYEGQRAYIQQVLQRQTTLSAKMYESIEIASVDAFQGREKDFIVL 386
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRA------CKHVAVVCDSSTICHN 651
S VRSN +GFL D RR+NVA+TRA C + V+ ++T+ H
Sbjct: 387 SCVRSNQRAGLGFLNDPRRLNVALTRARYGLVICGNAQVLARATTVGHQ 435
>gi|193614406|ref|XP_001947281.1| PREDICTED: regulator of nonsense transcripts 1-like [Acyrthosiphon
pisum]
Length = 1118
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 217/453 (47%), Gaps = 61/453 (13%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ KA+ + +RPL +IQGPPGTGKT I+ + V G VLV AP+N AVD +
Sbjct: 466 SQVKAVKHAV--QRPLSLIQGPPGTGKTVTSATIVYQLVTINGGPVLVCAPSNIAVDQLT 523
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
EK+ GL +VR+ + +R I V+ +L V+ ++ V + K L+ + +
Sbjct: 524 EKIHRTGLKVVRLCSKSRESIDSPVSFLALHNQVQKLPSNGVLQ---KLQQLKNETGELS 580
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
DD + LK++ + +E+L +A V+ T GA DP + + ++
Sbjct: 581 MDDEKRYSV---LKKVAE----------QELLEAADVICTTCVGAGDPRLMQFKFHSILI 627
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
++ IL GD CQL PV+ +KA G+ SL ER L G+
Sbjct: 628 DESVQATEPECMVPVVHGVQQLILVGDHCQLGPVVTCKKAANAGLTQSLFERLVVL--GI 685
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
+L QYRM+ ++ ++S Y GSL + L F P + P+L T
Sbjct: 686 RPFRLEVQYRMHPELSRFSSNFFYEGSLQNGVCADDRKLRKIEFPWP--VADEPMLFYAT 743
Query: 516 RLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
LG EE +AG+G S+ N EA V H + GV P I + +PY Q
Sbjct: 744 --------LGHEE---IAGSGTSYLNRTEAANVEHIATRFLRCGVRPDQIGIITPYEGQR 792
Query: 575 QHLRERLD---DLPEA--AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
+L + + LP +E+A++D+FQGRE D +I+S VRSN +GFL D RR+N
Sbjct: 793 AYLVQYMQYQAPLPAKLYQKIEIASVDAFQGREKDFIIMSCVRSNENQGIGFLNDPRRLN 852
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + +V + + LL + +
Sbjct: 853 VALTRAKYGLLIVGNPKVLSKKQLWNHLLNYYK 885
>gi|406695570|gb|EKC98873.1| hypothetical protein A1Q2_06844 [Trichosporon asahii var. asahii
CBS 8904]
Length = 1000
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 153/488 (31%), Positives = 231/488 (47%), Gaps = 84/488 (17%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + +VLV AP+N AVD
Sbjct: 399 LNHSQMAAVKAVLQK--PLSLIQGPPGTGKTVTSASIVYHLSKMNPGQVLVCAPSNVAVD 456
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ EK+ GL +VR+ +R E V S ++ + K+D R++L++
Sbjct: 457 HLAEKIHMTGLKVVRLTAKSR-----------EAVDSPVSYLTLHEQVAKNDTRRELQKL 505
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPLIRRLDT 409
++ +R L +L ++ ++K K V K++L++A V+ T GA DP RL
Sbjct: 506 IQ-------LRNELGELSQSDERKYKSLVRACEKDILNAADVICTTCVGAGDP---RLAK 555
Query: 410 FDL---------------------VG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
F +G K+ +L GD QL PVI+++KA G+ SL ER
Sbjct: 556 FKFRTVLVDEATQAAEPEAMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARAGLSQSLFER 615
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
L G +L QYRM+ ++ + S Y G+L + T L + F P +
Sbjct: 616 LVIL--GNRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWP--VAD 671
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P++ + G EE + +GT SF N EA V V +GV PS I V
Sbjct: 672 TPMMFHQ--------NTGTEE-ISSSGT-SFVNRTEAANVEKMVTKFFKSGVLPSQIGVI 721
Query: 568 SPYVAQVQHLRERLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+PY Q + + DL + VEVA++D+FQGRE D +I+S VRSN +G
Sbjct: 722 TPYEGQRSFIVSYMQLHGALKKDLYKE--VEVASVDAFQGREKDYIILSCVRSNEHQGIG 779
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFL------ARLLRHIRYFGRVK-----H 669
FL D RR+NVA+TRA V ++ + + + + L R + F R + +
Sbjct: 780 FLNDPRRLNVALTRAKYGVVILGNPKVLSKPSMMQFSKPRKTLSRAMESFRRFEPPANDY 839
Query: 670 AEPGSFGG 677
AE + GG
Sbjct: 840 AEKNARGG 847
>gi|326934529|ref|XP_003213341.1| PREDICTED: regulator of nonsense transcripts 1-like [Meleagris
gallopavo]
Length = 1059
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 210/442 (47%), Gaps = 63/442 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 427 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 486
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 487 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 535
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 536 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 588
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G L QYR
Sbjct: 589 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLPWGCL----QVQYR 644
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 645 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 693
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 694 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 752
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 753 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 812
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 813 IVGNPKALSKQPLWNHLLNYYK 834
>gi|427788499|gb|JAA59701.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 1125
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 140/456 (30%), Positives = 216/456 (47%), Gaps = 69/456 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT ++ +Q VLV AP+N AVD
Sbjct: 452 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATVVYHLAKQSTGPVLVCAPSNIAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ GL +VR+ +R E + S ++ + + D +L
Sbjct: 510 QLTEKVHQTGLRVVRLCAKSR-----------EALNSPVSFLALHNQIRSMDGHSELHKL 558
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + +K +E+L +A V+ T GA DP + R
Sbjct: 559 QQLKDET-----GELSSADEKRYRMLKKACERELLEAADVICCTCVGAGDPRLARFKFHS 613
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 614 ILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 672
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPL 510
G+ +L QYRM+ +A + S Y GSL + + +D P+ +P + P+
Sbjct: 673 -GIRPLRLEVQYRMHPQLAQFPSNFFYEGSLQNGVFADERRMRGLDFPWPQP----ERPM 727
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
L C+ ++AG+G S+ N EA +V + +GV P + V +P
Sbjct: 728 LFY-----------ACQGQEEMAGSGTSYLNRTEAALVEKICTRFLRSGVKPQQVGVITP 776
Query: 570 YVAQ----VQHLRER---LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
Y Q VQH++ + L + +EVA++D+FQGRE D +++S VRSN +GFL
Sbjct: 777 YEGQRAYLVQHMQFQGALHSKLYQE--IEVASVDAFQGREKDLIVMSCVRSNEHQGIGFL 834
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
D RR+NVA+TRA + +V + + LL
Sbjct: 835 NDPRRLNVALTRARYGLIIVGNPKVLSKQPLWNHLL 870
>gi|312373027|gb|EFR20858.1| hypothetical protein AND_18385 [Anopheles darlingi]
Length = 1161
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 138/440 (31%), Positives = 213/440 (48%), Gaps = 58/440 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + + +LV AP+N AVD + EK+ L +VR
Sbjct: 471 QRPLSLIQGPPGTGKTVTSATIVYQLAKLNSGPILVCAPSNTAVDQLTEKIHRTNLKVVR 530
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V AR A+ S + +++ + E KK Q LKD++ + +
Sbjct: 531 VC--ARSREAIDSPVSYLALHNQIRNMAQNTELKK-------LQQLKDETGELSLSD--E 579
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--------------- 413
+ ++LKK+ + +E+L +A V+ T GA D ++RL ++
Sbjct: 580 RRYRSLKKQAE---RELLEAADVICCTCVGAGDLRLQRLKFNSILIDESMQSTEPECMVP 636
Query: 414 ----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+
Sbjct: 637 VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVAL--GIRPFRLEVQYRMHPE 694
Query: 470 IASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
++ + S Y GSL + L VD P+ P CP+ L T+ G EE
Sbjct: 695 LSQFPSNFFYEGSLQNGVCADERKLKVDFPWPSP----DCPMFFLVTQ--------GQEE 742
Query: 529 HLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+AG+G S+ N EA V + AG+ P I + +PY Q +L + +
Sbjct: 743 ---IAGSGTSYLNRTEASNVEKITTRFLKAGIKPEQIGIITPYEGQRAYLVQYMQYQGSL 799
Query: 588 AG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+E+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA + +V
Sbjct: 800 HSKLYQEIEIASVDAFQGREKDIIIMSCVRANEHQGIGFLNDPRRLNVALTRAKYGIIIV 859
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL +
Sbjct: 860 GNPKVLSKQELWNHLLNFYK 879
>gi|300727419|ref|ZP_07060828.1| DNA helicase [Prevotella bryantii B14]
gi|299775299|gb|EFI71898.1| DNA helicase [Prevotella bryantii B14]
Length = 614
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 228/474 (48%), Gaps = 73/474 (15%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ+KA+ L K + ++ GPPGTGKT L E I + + +VLV A +N AVD + E
Sbjct: 173 SQEKAVNEVLWAK-DVEVVHGPPGTGKTTTLVEAINETLMRENQVLVCAQSNMAVDWICE 231
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDL 350
KL D G+N++R+GNP + V ++ SF E FE +RK +
Sbjct: 232 KLVDRGINVLRIGNPTK-------------VNEQMLSFTYERRFEAHPDYPQLWAIRKTI 278
Query: 351 RQCL-----KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI- 404
RQ +DD Q L+ L + E ++ A+V+ +T G+A+ ++
Sbjct: 279 RQLRSQKKGRDDRY----HQKLEHLKARATELEIRINTQLFGEARVIASTLVGSANRILE 334
Query: 405 -RRLDTFDL----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
++ T + R ILAGD CQL P I S AL+ G+G +L+ER
Sbjct: 335 GQKFGTLFIDEAAQALEAACWIPMRRATRVILAGDHCQLPPTIKSLAALKAGLGKTLMER 394
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
++ + T L QYRMN+ I ++S Y G + ++ + ++D +
Sbjct: 395 IVE-NKPEVVTLLKVQYRMNEQIMQFSSNYFYHGEVETAPQIKYRGILDY---------E 444
Query: 508 CPLLLLDT-RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVV---HHVFSLICAGV---S 560
P++ +DT + G +E G N+GEAE+ + F I
Sbjct: 445 DPMMWIDTSEIEVGPDEPSFKEQFIGENFGRV-NKGEAELTLRTLEEYFQKIGKTRILDE 503
Query: 561 PSAIAVQSPYVAQVQHL----RERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
+ + SPY AQVQ+L R+R P + V T+D FQG+E D ++ISMVR+N
Sbjct: 504 NIDVGIISPYRAQVQYLKKLIRKREFFKPYRKFISVNTVDGFQGQERDIILISMVRANDD 563
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
G +GFL D RRMNVAITRA + ++ ++ T+ + F +L +I+ + HA
Sbjct: 564 GQIGFLNDLRRMNVAITRARMKLIILGNAQTMSKHPFYHQLWNYIQ---EINHA 614
>gi|317479605|ref|ZP_07938732.1| hypothetical protein HMPREF1007_01848 [Bacteroides sp. 4_1_36]
gi|316904267|gb|EFV26094.1| hypothetical protein HMPREF1007_01848 [Bacteroides sp. 4_1_36]
Length = 631
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 140/458 (30%), Positives = 220/458 (48%), Gaps = 76/458 (16%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+G
Sbjct: 205 RDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWISEKLVDRGVNVLRIG 264
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSD---------LRKDLRQCLKDDSLAA 361
NP R V K+ SF +ER+ + +RK+LR+ +
Sbjct: 265 NPTR-------------VNDKMLSFT--YERRFENHPLYPELWSIRKNLRELGSRARRGS 309
Query: 362 -----GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-- 412
G+R + +L E + E+ A V+ +T + L+ RR T +
Sbjct: 310 YDEREGVRSRMSRLRDRATALEIQINSELFDGAHVIASTLVSSNHRLLNGRRFGTLFIDE 369
Query: 413 --------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R +LAGD CQL P I +A GG+ +L+E+ + V++
Sbjct: 370 AAQALEAACWIAIRKADRVVLAGDHCQLPPTIKCYEAARGGLERTLMEKVVSNKPAVVSL 429
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRM++ I + S+ Y G L ++S V ++D W T P+ +DT
Sbjct: 430 -LKVQYRMHEEIMKFPSQWFYNGELEAASEVRYRGILD-------WDT--PIHWIDTS-- 477
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYV 571
+ +E + T N+ EA++++ + + +S + I + SPY
Sbjct: 478 ----EMDFKEEF-VGETFGRINKAEADLLLSEL-KIYINRISGNRILEEKIDFGIISPYK 531
Query: 572 AQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
AQVQ+LR ++ P + V T+D FQG+E D + IS+VR+N G +GFL D RR
Sbjct: 532 AQVQYLRNKIKADASLKPYRSLFTVNTVDGFQGQERDVIFISLVRANEEGQIGFLNDLRR 591
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
MNVAITRA + ++ ++ T+ H+ F +LL I+ G
Sbjct: 592 MNVAITRARMKLVILGEAETLKHHGFYRKLLEFIQNIG 629
>gi|423331731|ref|ZP_17309515.1| hypothetical protein HMPREF1075_01528 [Parabacteroides distasonis
CL03T12C09]
gi|409229572|gb|EKN22444.1| hypothetical protein HMPREF1075_01528 [Parabacteroides distasonis
CL03T12C09]
Length = 640
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 161/513 (31%), Positives = 251/513 (48%), Gaps = 77/513 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEV----------KLDGIMGKTFDDSQKKAIALGLNKKRP 252
T+F DV + N L+ +V +L I + SQ++A+ L K+
Sbjct: 146 TMFSALSDVMRAKNNQLSHLRDVLLGQEKPGQRELFPIRFPWLNRSQEEAVNKVLGAKQ- 204
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL D G+N++R+GNP
Sbjct: 205 VSIVHGPPGTGKTTTLVEAIYETLHRENQVIVCAQSNTAVDCISEKLVDRGINVLRIGNP 264
Query: 313 ARISPAVASKSLGEIVKS-----KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
RI+ + S + +S +L S +S++RK R+ + D+ IR L
Sbjct: 265 TRINDKMLSFTYERRFESHPDYPELWSIRKAIRDIQSNMRKKSRE--ERDT----IRNRL 318
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------------- 412
+L + E + E+ A+VV T G+A+ ++ R T +
Sbjct: 319 SRLKFRATELEVKIDTELFDEARVVACTLVGSANRVMMNRHFTTLFIDEAAQALEAACWI 378
Query: 413 -VGK--RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
+GK R ILAGD QL P I +A G+G +L+++ A ++ L QYRM++
Sbjct: 379 AIGKADRVILAGDHHQLPPTIKCIEAEREGLGRTLMQKIAHTKPETVSL-LKIQYRMHED 437
Query: 470 IASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWI--TQCPLLLLDTRLPYGSLSLG 525
I ++S+ Y L S+ V+ L +DTP V W ++C +TR
Sbjct: 438 IMRFSSQWFYHNELESAPEVSGRGILRLDTPIV---WFDTSECDFTE-NTR--------- 484
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ-------SPYVAQVQHLR 578
EE T S N EAE++V + S I +S + + SPY AQVQ++R
Sbjct: 485 -EE------TMSRVNRQEAELLVEQLRSYI-QKISKERVLEENIDFGLISPYKAQVQYIR 536
Query: 579 ERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+ + P + V T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITR
Sbjct: 537 KLIKQDAFFKPLRRLITVHTVDGFQGQERDVILISLVRANEDGKIGFLNDLRRMNVAITR 596
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
A + ++ D+ST+ + F L +I G++
Sbjct: 597 ARMKLMILGDASTLTRHAFYKELYNYISQRGKI 629
>gi|294929939|ref|XP_002779430.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
gi|239888538|gb|EER11225.1| nonsense-mediated mRNA decay protein, putative [Perkinsus marinus
ATCC 50983]
Length = 923
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 220/451 (48%), Gaps = 65/451 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ +A+ L ++PL +IQGPPGTGKT II +Q + +VLVTAP+N AVD
Sbjct: 460 LNHSQVQAVQKAL--EQPLSLIQGPPGTGKTVTSATIIYHLARQHQGQVLVTAPSNIAVD 517
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
+ EK+ GL +VR+ +R + V SL +++ EF +K DL++++
Sbjct: 518 QLAEKIHLTGLKVVRILAKSRECLYSPVEFLSLHTQIRNMRTPQAKEF-KKLFDLKEEVG 576
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ D K + + +E+L +A V+ T GA DP + +L F
Sbjct: 577 ELTSSDE-------------KRFRILRSQVERELLENADVICTTCAGAGDPRLGKL-RFK 622
Query: 412 LV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
+V K+ IL GD QL PV++ +KA + G SL ER L
Sbjct: 623 MVLVDEATQACEPEALIPICNGAKQVILVGDHKQLGPVVMCKKAAKAGFKQSLFERLIAL 682
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
GV +L QYRM+ ++A + S+ Y G L + T+ + F P + P+
Sbjct: 683 --GVRPIRLEVQYRMHPSLAEFPSQTFYDGCLQNGITMEDRQVSGVKFPWPR--EEMPMF 738
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+ S G EE + +GT S+ N EA + + + AG+ S I V +PY
Sbjct: 739 FYN--------STGQEE-ISASGT-SYLNRSEAINIEKIITYFLRAGLKGSQIGVVTPYE 788
Query: 572 AQ---VQHLRERLDDLPEA--AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
Q +Q + +R L +E+A++D+FQGRE D +++S VRSN +GFL D R
Sbjct: 789 GQRAYIQQVLQRQTTLSAKMYESIEIASVDAFQGREKDFIVLSCVRSNQRAGLGFLNDPR 848
Query: 627 RMNVAITRA------CKHVAVVCDSSTICHN 651
R+NVA+TRA C + V+ ++T+ H
Sbjct: 849 RLNVALTRARYGLVICGNAQVLARATTVGHQ 879
>gi|424842458|ref|ZP_18267083.1| DNA/RNA helicase, superfamily I [Saprospira grandis DSM 2844]
gi|395320656|gb|EJF53577.1| DNA/RNA helicase, superfamily I [Saprospira grandis DSM 2844]
Length = 637
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 152/502 (30%), Positives = 241/502 (48%), Gaps = 67/502 (13%)
Query: 215 EENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP-----------LLIIQGPPGTG 263
++N L++ E+ L G M F D ++ LN + + ++ GPPGTG
Sbjct: 153 QDNRLSELREILL-GKMPARFQDHRRPGDLGQLNTSQAEAVQQILAAEDVAVVHGPPGTG 211
Query: 264 KTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKS 323
KT L I V++ +LV AP+N A D + E+L++ GLN+VRVGN +R+ V S
Sbjct: 212 KTTTLVAAIKELVKRESPILVCAPSNPASDLLTERLAEQGLNVVRVGNVSRLDEKVLQHS 271
Query: 324 LGEIVKSK--------LASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLK 375
+ I++ + + AE RK ++ +++ Q K L + +
Sbjct: 272 IEGILQDRAEMKEVKKMKKEAAELFRKAGKFKRKFGPNERNERRET--YQEAKNLIRHAR 329
Query: 376 KKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDT--------------FDLVGK--RC 417
E ++++LS A + T + + I RR T + + K +
Sbjct: 330 MMEDYLIEKILSEADAICCTLVSSMNRYIENRRFHTVVIDEAAQALEPACWIAIAKADKV 389
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKE 477
ILAGD QL P + SRKA + G+ ++LLE+A E V L TQYRM++ I ++++
Sbjct: 390 ILAGDPFQLPPTVKSRKAAQKGLSITLLEKAVERLERV--QLLRTQYRMHEQIMQFSNQY 447
Query: 478 MYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC--EEHLDLAGT 535
Y G L ++ V + L P T P+ +DT GC +E ++ T
Sbjct: 448 FYEGQLQAADFVKNWTLAMRPGGDTT-----PVEFIDT--------AGCSFDEKIN-PET 493
Query: 536 GSFYNEGEAEIV---VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL----DDLPEAA 588
S YN E I+ + H+ S V PS IAV SPY QV+ ++E++ D P+
Sbjct: 494 LSSYNPEEYYILRQHLDHLLSFADKQVRPS-IAVISPYREQVRFMQEQMETDFDHFPDDD 552
Query: 589 GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+FQG+E D V IS+VRSN G +GFL D+RR+NVA+TRA K + ++ DS+T+
Sbjct: 553 ITIDTID-AFQGQERDVVYISLVRSNEKGEIGFLKDTRRLNVAMTRARKKLIIIGDSATL 611
Query: 649 CHNTFLARLLRHIRYFGRVKHA 670
+ F + + G+ A
Sbjct: 612 GQHKFYQSFMDYCEKHGKYASA 633
>gi|392572780|gb|EIW65924.1| hypothetical protein TREMEDRAFT_72495 [Tremella mesenterica DSM
1558]
Length = 734
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 217/762 (28%), Positives = 344/762 (45%), Gaps = 156/762 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L F + + LL++ERD E E T+ LN S+ P L G A +
Sbjct: 21 LTTFFDKHASLLKLERDTEEEQTKL-LN----------SNCPPTLLERRGLA-------L 62
Query: 73 CNLFVVSTSTGLGGMHLV-LFRVEGNH---RLPPTTLSPGDMVCVRVCDSRGACATSCIQ 128
L V +TGLGG L+ L R H +LP T R + ++
Sbjct: 63 GGLGVKGVNTGLGGKTLMQLCRPSAYHTDLKLPTHTF--------RAKMKQKDKDEGSVE 114
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQK 188
G V+ + G T+++A++ +K R+ R+ LA+++T++R + L L+K
Sbjct: 115 GIVYRV--TGETVTIAVDG-------TKEIDLPERL-RLLKLANSVTFDRMDKTLERLRK 164
Query: 189 -----NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIM--GKTFDDSQKK 241
G N +++ K+ TWL+E E K + +M G+ ++ QK+
Sbjct: 165 LVLPSQGESPTNAFNMSLINCLLGKQQPTWLDEIPPRLDQETKQEELMFFGEKLNEVQKE 224
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEII--------ARAVQQGERVLVTAPTNAAVD 293
AI L K + I GPPGTGKT L E+I + + R+LVT P+N A+D
Sbjct: 225 AIRFCL-KAEYVACIHGPPGTGKTHTLVELIFHLLSRPASPSSSLPPRILVTTPSNLALD 283
Query: 294 NMVEKLSDVGLN-----------IVRVGNPARISPAVASKSL---------GEIVK---S 330
N++ +L + + I+R+G+P R+ + S++L G +++
Sbjct: 284 NLLLRLHALAQHPPYSSVLPRGSILRIGHPTRVHRDLVSETLDYRAANGEDGSLLRDIGK 343
Query: 331 KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQ 390
+L + + RKK + R +K ++ ++L K +++E + V V++ A
Sbjct: 344 ELDGHLGDLARKKGE-----RGAVKGKERGKKWEEI-RELRKEYRQREGKVVTNVVNRAM 397
Query: 391 VVLATNTGAADPLIRRLDT--FD-------------------LVGKRCILAGDQCQLAPV 429
VVLAT A R+L FD L K+ ILAGD QL P
Sbjct: 398 VVLATCHSAGS---RQLANTIFDVCIIDEATQAVEAVCWVPILKSKKVILAGDPQQLRPT 454
Query: 430 ILSR--KALEGGI-------------------------------GVSLLERAATLHEGVL 456
I+S+ K ++ I +L +R L+ +
Sbjct: 455 IMSKPGKTVKQPIIAPSPEEIATISTELTKVDIARPTLTPPRTLETTLFDRLERLYGPGI 514
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR 516
L QYRMN IAS+ S +Y G L++ +VA H L+D P VK L +T
Sbjct: 515 KQVLQVQYRMNAHIASFPSSALYEGKLVADQSVALHTLLDLPDVKADE-PDAKETLGETV 573
Query: 517 LPYGSLSLGCEEHL------DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ + + GCE + + G GS NE EA +V LI +G+SP+ I + +PY
Sbjct: 574 VFFDTA--GCEYYEKDEGGDNGLGEGSKMNENEAVVVDKWARRLIASGISPADIGIITPY 631
Query: 571 VAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
AQV L L DD PE + + T+D QG+E + +I+S+VRSN+ G VGFLG+ RR+N
Sbjct: 632 QAQVSLLSSMLRDDFPE---MTIGTVDGLQGQEREVIILSLVRSNSTGEVGFLGEYRRLN 688
Query: 630 VAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKHA 670
VA+TRA + + VV DS T+ + +L + + V++A
Sbjct: 689 VAMTRAKRQLCVVGDSDTVGKGSKYLKSWMTWLEANADVRYA 730
>gi|156836785|ref|XP_001642437.1| hypothetical protein Kpol_337p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156112963|gb|EDO14579.1| hypothetical protein Kpol_337p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 999
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 149/457 (32%), Positives = 212/457 (46%), Gaps = 65/457 (14%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMV 296
SQ A+A L K PL +IQGPPGTGKT I+ + +R+LV AP+N AVD++
Sbjct: 429 SQASAVAHVLQK--PLSLIQGPPGTGKTVTSATIVYHLSKSHKDRILVCAPSNVAVDHLA 486
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
KL D+GL +VR+ +R + +V+ +L +V R +
Sbjct: 487 SKLRDLGLKVVRLTAKSREDVESSVSDLALHNLVA-----------------RSSKGELK 529
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-FDLV 413
K L + +L K + ++ E+L A VV T GA D +RLD F V
Sbjct: 530 KLLKLKEEVGELSATDAKKFVRLVRKAESEILKKADVVCCTCVGAGD---KRLDAKFRTV 586
Query: 414 --------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
K+ IL GD QL PVIL RKA + G+ SL ER L
Sbjct: 587 LIDESTQASEPECLIPIVKGAKQIILVGDHQQLGPVILERKAGDAGLKQSLFERLILL-- 644
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
G + +L QYRMN ++ + S Y GSL + T+ + + F P I + P++
Sbjct: 645 GHVPIRLEVQYRMNPFLSEFPSNMFYEGSLQNGVTIEQRTIPGSTFPWP--IHEVPMMFW 702
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
YG E + GT SF N EA + L GV P I V +PY Q
Sbjct: 703 AN---YG------REEISANGT-SFLNRIEAMNCERIITRLFKDGVKPHQIGVITPYEGQ 752
Query: 574 VQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D RR+
Sbjct: 753 RAYILQYMQMNGSLDKELYVNVEVASVDAFQGREKDYIILSCVRANEQQAIGFLSDPRRL 812
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NV +TRA + ++ + ++ N LL H R G
Sbjct: 813 NVGLTRAKYGLVILGNPRSLSRNVLWNHLLIHFREKG 849
>gi|195131883|ref|XP_002010374.1| GI14718 [Drosophila mojavensis]
gi|193908824|gb|EDW07691.1| GI14718 [Drosophila mojavensis]
Length = 1187
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 140/457 (30%), Positives = 216/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD
Sbjct: 459 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVD 516
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 517 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRNMETNSELKKL 565
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ ++L +A V+ T GA D + R+
Sbjct: 566 QQLKDET-----GELSSADEKRYRSLKRGAENQLLEAADVICCTCVGAGDMRLSRIKFTS 620
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 621 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 679
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 680 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 734
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AG+ P I + +PY
Sbjct: 735 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY 783
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 784 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 843
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 844 RRLNVALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYK 880
>gi|405123238|gb|AFR98003.1| ATP dependent helicase [Cryptococcus neoformans var. grubii H99]
Length = 1092
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 145/465 (31%), Positives = 220/465 (47%), Gaps = 73/465 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + +VLV AP+N AVD
Sbjct: 453 LNHSQMSAVKAVLQK--PLSLIQGPPGTGKTVTSASIVYHLAKMNPGQVLVCAPSNVAVD 510
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ EK+ GL +VR+ +R E + S + + +D +L++
Sbjct: 511 HLCEKIHQTGLKVVRLAAKSR-----------EALDSSVDFLSLHSQVANADTHHELQKL 559
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVK----EVLSSAQVVLATNTGAADPLIRRLDT 409
++ +R +L ++ ++K K VK ++L++A V+ T GA DP RL
Sbjct: 560 IQ-------LRNDQGELSQSDERKYKTLVKACEKDILNAADVICTTCVGAGDP---RLAK 609
Query: 410 FDL---------------------VG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
F +G K+ +L GD QL PVI+++KA G+ SL ER
Sbjct: 610 FKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARAGLSQSLFER 669
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
L G +L QYRM+ ++ ++S Y G+L + T L + F P +
Sbjct: 670 LVIL--GNHPIRLQVQYRMHPCLSEFSSNLFYEGTLQNGVTAPERLRKNVDFPWP--VAD 725
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P+ +LG EE + +GT SF N EA V V +GV P+ I V
Sbjct: 726 TPMFFHQ--------NLGTEE-ISSSGT-SFLNRTEASNVEKMVTKFFKSGVLPNQIGVI 775
Query: 568 SPYVAQVQHLRERLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+PY Q ++ + DL + VEVA++D+FQGRE D +I+S VRSN +G
Sbjct: 776 TPYEGQRSYIASYMQLHGSLKKDLYKE--VEVASVDAFQGREKDYIILSCVRSNEHQGIG 833
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
FL D RR+NVA+TRA V ++ + + + LL H + G
Sbjct: 834 FLNDPRRLNVALTRAKYGVVILGNPKVLSKHPLWLYLLSHYKEKG 878
>gi|282877092|ref|ZP_06285934.1| putative DNA helicase [Prevotella buccalis ATCC 35310]
gi|281300774|gb|EFA93101.1| putative DNA helicase [Prevotella buccalis ATCC 35310]
Length = 659
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 148/479 (30%), Positives = 227/479 (47%), Gaps = 70/479 (14%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286
D I +D Q +A+ L K + ++++ GPPGTGKT L E I +++ +VLV A
Sbjct: 196 FDDIRFPWLNDLQAEAVNKVL-KAKDVMVVHGPPGTGKTTTLVEAIYETLKRESQVLVCA 254
Query: 287 PTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKS 344
+N AVD + E+L D G+N++R+GNP R V K+ SF E FE
Sbjct: 255 QSNMAVDWISERLVDRGVNVLRIGNPTR-------------VNDKMLSFTYERRFESHPD 301
Query: 345 -----DLRKDLRQCLKDDSLA-AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
+RK LRQ + A +G Q +++L + + E ++ A+V+ +T TG
Sbjct: 302 YPQLWAIRKALRQLKQHRKTAGSGFHQKVERLQERATELEIRIKGQLFGEARVIASTLTG 361
Query: 399 AADPLI--RRLDTF--DLVGK--------------RCILAGDQCQLAPVILSRKALEGGI 440
A+ L+ ++ T D + R +LAGD CQL P I S AL+GG+
Sbjct: 362 TANRLLMGQKYQTLFIDEAAQALEAACWIAIRKVHRVVLAGDHCQLPPTIKSIAALKGGL 421
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
+L++R V+ T L QYRMND I ++S Y G + S+ + ++D
Sbjct: 422 DKTLMQRIVENKPEVV-TMLGMQYRMNDQIMRFSSDWFYHGKVQSAPAIKYRGILD---- 476
Query: 501 KPTWITQCPLLLLDTR---------LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIV---V 548
P+ +DT S + +EH G NE EAE+ +
Sbjct: 477 -----YDVPIQWIDTAEQAENAHFIEESASDAPTFQEHFVGESFGRI-NEDEAELTLSAL 530
Query: 549 HHVFSLICAGV---SPSAIAVQSPYVAQVQHLRERLDDLPEAAG----VEVATIDSFQGR 601
F+ I + + SPY AQVQ+LR + P + V T+D FQG+
Sbjct: 531 EQYFNKIGKQRLLDEAVDVGIISPYRAQVQYLRRLIKKRPFFKPFRHLISVNTVDGFQGQ 590
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
E D ++IS+VR+N G +GFL D RRMNVA+TRA + ++ T+ + F +L +
Sbjct: 591 ERDVILISLVRANEDGQIGFLRDLRRMNVAMTRARMKLIILGHVPTLVRHPFYKKLYDY 649
>gi|218128722|ref|ZP_03457526.1| hypothetical protein BACEGG_00293 [Bacteroides eggerthii DSM 20697]
gi|217989177|gb|EEC55492.1| putative DNA helicase [Bacteroides eggerthii DSM 20697]
Length = 636
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 160/518 (30%), Positives = 242/518 (46%), Gaps = 97/518 (18%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTF-----------DDSQKKAIALGLNK-- 249
T+F EDV + N LA+ + L G M F + +Q+ A+ NK
Sbjct: 152 TMFETLEDVLRAKGNRLAELRDTLL-GTMKVGFRELYPVRFPWLNSTQETAV----NKVL 206
Query: 250 -KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R
Sbjct: 207 CARDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNMAVDWISEKLVDRGVNVLR 266
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSD---------LRKDLRQCLKDDSL 359
+GNP R V K+ SF +ER+ + +RK+LRQ
Sbjct: 267 IGNPTR-------------VNDKMLSFT--YERRFENHPLYPELWSIRKELRQLGGRARR 311
Query: 360 AA-----GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL 412
+ GIR + +L E + E+ SA V+ +T + L+ RR T +
Sbjct: 312 GSYDEREGIRSRMSRLRDRATALEVQINTELFDSAHVIASTLVSSNHRLLNGRRFGTLFI 371
Query: 413 ----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
R +LAGD CQL P I +A GG+ +L+E+ A +
Sbjct: 372 DEAAQALEAACWIAIRKADRVVLAGDHCQLPPTIKCYEAARGGLERTLMEKVAANKPSAV 431
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLD 514
+ L QYRM++ I ++S Y G L ++ + L DTP TWI + D
Sbjct: 432 SL-LKVQYRMHEDIMRFSSNWFYDGELEAAPEIRHRGILDWDTPV---TWIDTSDM---D 484
Query: 515 TRLPYGSLSLGC----EEHLDLAGTGSF-YNEGEAEIVVHHV-FSLICAGVSPSAIAVQS 568
+ + + G E HL L ++ G + I+ + F LI S
Sbjct: 485 FKEEFVGETFGRINKEEAHLLLKELEAYILRIGGSRILEERIDFGLI------------S 532
Query: 569 PYVAQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
PY AQVQ+LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D
Sbjct: 533 PYKAQVQYLRGKIKGSATLRPYRSLITVNTVDGFQGQERDVIFISLVRANEEGQIGFLND 592
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RRMNVAITRA + ++ +++T+ H+ F +LL +++
Sbjct: 593 LRRMNVAITRARMKLVILGEAATLGHHAFYKQLLEYVK 630
>gi|256840040|ref|ZP_05545549.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738970|gb|EEU52295.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 640
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 161/513 (31%), Positives = 251/513 (48%), Gaps = 77/513 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEV----------KLDGIMGKTFDDSQKKAIALGLNKKRP 252
T+F DV + N L+ +V +L I + SQ++A+ L K+
Sbjct: 146 TMFSALSDVMRAKNNQLSHLRDVLLGQEKPGQRELFPIRFPWLNRSQEEAVNKVLGAKQ- 204
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL D G+N++R+GNP
Sbjct: 205 VSIVHGPPGTGKTTTLVEAIYETLHRENQVIVCAQSNTAVDCISEKLVDRGINVLRIGNP 264
Query: 313 ARISPAVASKSLGEIVKS-----KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
RI+ + S + +S +L S +S++RK R+ + D+ IR L
Sbjct: 265 TRINDKMLSFTYERRFESHPDYPELWSIRKAVRDIQSNMRKKSRE--ERDT----IRNRL 318
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------------- 412
+L + E + E+ A+VV T G+A+ ++ R T +
Sbjct: 319 SRLKFRATELEVKIDTELFDEARVVACTLVGSANRVMMNRHFTTLFIDEAAQALEAACWI 378
Query: 413 -VGK--RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
+GK R ILAGD QL P I +A G+G +L+++ A ++ L QYRM++
Sbjct: 379 AIGKADRVILAGDHHQLPPTIKCIEAEREGLGRTLMQKIAHTKPETVSL-LKIQYRMHED 437
Query: 470 IASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWI--TQCPLLLLDTRLPYGSLSLG 525
I ++S+ Y L S+ V+ L +DTP V W ++C +TR
Sbjct: 438 IMRFSSQWFYHNELESAPEVSGRGILRLDTPIV---WFDTSECDFTE-NTR--------- 484
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ-------SPYVAQVQHLR 578
EE T S N EAE++V + S I +S + + SPY AQVQ++R
Sbjct: 485 -EE------TMSRVNRQEAELLVEQLRSYI-QKISKERVLEEHIDFGLISPYKAQVQYIR 536
Query: 579 ERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+ + P + V T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITR
Sbjct: 537 KLIKQDAFFKPLRRLITVHTVDGFQGQERDVILISLVRANEDGKIGFLNDLRRMNVAITR 596
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
A + ++ D+ST+ + F L +I G++
Sbjct: 597 ARMKLMILGDASTLTRHAFYNELYNYISQRGKI 629
>gi|256810316|ref|YP_003127685.1| DNA helicase [Methanocaldococcus fervens AG86]
gi|256793516|gb|ACV24185.1| DNA helicase [Methanocaldococcus fervens AG86]
Length = 655
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 189/708 (26%), Positives = 325/708 (45%), Gaps = 125/708 (17%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+D + ++ EL+ +ER E++F + E+ + EN GRA I
Sbjct: 4 VDLYVKKFMELIELERRCEMDFHKNEIIRLGKKRENV------------GRA-------I 44
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL LG +V F G + T +SPGD+V + S+ S + V
Sbjct: 45 LNLKGKFLGESLGCT-IVRF---GRKKPFKTEISPGDVVLI----SKENPLQSDLYANVI 96
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
+G++ ++ ++ ++ + VRID + +T++R EAL
Sbjct: 97 YVGKNFIDVAFDVD------VLRWVYKERVRID---LYVNDITFKRMKEAL-----REFA 142
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
++ +A ++ G + L E+ ++L+ K ++SQK A+ + K
Sbjct: 143 RKRDKLAYII--LGIEHPEKPLRED-------IELE-FYDKHLNESQKLAVKKAVLSK-D 191
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKL--SDVGLNIVRV 309
L +I GPPGTGKT L E+I + V+ +VL TA +N A DN++E L L +VRV
Sbjct: 192 LYLIHGPPGTGKTRTLTEVIVQEVRFNKHKVLATADSNIAADNILEYLIKKYPDLKVVRV 251
Query: 310 GNPARISPAVASKSLGEIVKSK--------LASFVAEFERKKSDL--------------- 346
G+P RIS + SL ++++ L + E + ++
Sbjct: 252 GHPTRISKDLIQHSLPYLIENHEKYQEILSLKEKIKEIKEQRDKFLKPSPRWRRGMSDEQ 311
Query: 347 -------RKDLRQCLKDD--SLAAGI--RQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT 395
RKD R K+ S+A I + +K++ +L + ++ + E+LS A V++AT
Sbjct: 312 ILKVAKRRKDYRGVPKEKIISMAEWIVRNKKIKKIINSLDEITEKIMNEILSEADVIVAT 371
Query: 396 NTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKAL 436
N+ A +++ + FD+V GK+ I+AGD QL P +LS
Sbjct: 372 NSMAGSEILKGWE-FDVVVIDEGSQAMEPSCLIPIVKGKKLIMAGDHKQLPPTVLSENE- 429
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ +L ER + ++ L QYRMN+ I + ++ Y L + +V + L+D
Sbjct: 430 --ELKKTLFERLIKKYPE-FSSILEIQYRMNEKIMEFPNRMFYDNKLKADESVKNITLLD 486
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
VK I + +++ +P + E D + S+YN EAE V+ V LI
Sbjct: 487 --LVKEEEIDESDRDIVNE-IPVQFFHVEGVERKD-KESPSYYNIEEAEKVLEVVKKLIK 542
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
+ + I +PY AQV++LR ++ + VEV T+D FQGRE +A++IS VR+
Sbjct: 543 YKIPTNVI---TPYDAQVRYLRRLFEE--QNIDVEVNTVDGFQGRENEAIVISFVRTKNF 597
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYF 664
GFL D RR+NVAITRA + + ++ + + + + +++ + F
Sbjct: 598 ---GFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAKSF 642
>gi|237832715|ref|XP_002365655.1| DNA-binding protein, putative [Toxoplasma gondii ME49]
gi|211963319|gb|EEA98514.1| DNA-binding protein, putative [Toxoplasma gondii ME49]
Length = 1320
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 176/585 (30%), Positives = 250/585 (42%), Gaps = 171/585 (29%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +SQK+A+ LGL + R L +I GPPGTGK+ L E++ + +G RVL AP+N AVD
Sbjct: 277 TLTESQKRAVLLGL-RSRDLALIHGPPGTGKSTALLELLLQLASRGARVLACAPSNVAVD 335
Query: 294 NMVEK---LSDVGLNI--------------VRVGNPARISPAVASKSL-GEIVKSKLASF 335
N++E+ ++V N VR+G+PAR+ ++ L ++ +S+ A+
Sbjct: 336 NLLERVAAFANVNSNASLEASRLAGRLRRCVRLGHPARVDENLSRFCLESQVQRSEGAAL 395
Query: 336 VAEF------------ERKKSDLRKDLRQCLKDDSLAAGI-------------------- 363
E +RKK + RQ S G+
Sbjct: 396 SREIRLELDRSLEMLRDRKKLERHMQRRQKETRGSGPTGLGESSALSSSTRASTWSQAKR 455
Query: 364 --RQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG----------------------- 398
R+ ++ L + L+ E+ V+EVL + +V AT G
Sbjct: 456 ELREEIQTLRRELRAFERRAVEEVLEQSPIVFATCVGSDNEALKQFFAPPGDASGKPGRS 515
Query: 399 ---------AADPLIRRLDTFDLV-------------GKRCILAGDQCQLAPVILSRKAL 436
AA +R L F LV G R +LAGD CQL P I SRKA
Sbjct: 516 GFDVVVIDEAAQASLRLLPLFVLVAALEAVCWIPLLYGHRAVLAGDHCQLPPTIKSRKAE 575
Query: 437 EGGIGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMYGGSLISSSTVASHLL- 494
+GG+GV+L ER G ++L TQ+RM+ I W++++ Y G+L ++ +VAS LL
Sbjct: 576 DGGLGVTLFERQMHAQHGPRISQLLDTQFRMHRKIMGWSNEQFYHGALRAADSVASRLLE 635
Query: 495 VDTPFVK------------------------------PTWITQC---PLLLLDT------ 515
P +K T+ T C P L +DT
Sbjct: 636 AKYPRLKDETEHRGKRGEADLGQRADSSPGKRADGELETFAT-CVAPPFLWIDTAGVSWL 694
Query: 516 -----RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA-GVSPSAIAVQSP 569
+ L L S N GEA +VV + L+ GV P I + +P
Sbjct: 695 EEDNQEEDHSLLRQASASSTALQLHASKSNRGEAALVVKRLQDLVWNFGVKPEDICIITP 754
Query: 570 YVAQVQHLRERL------------------------DDLPEA-AGVEVATIDSFQGREAD 604
Y QVQ LR+ L D L + A + V T+D FQGRE +
Sbjct: 755 YRQQVQLLRQYLREAAEAAPALALGKKEGEARERETDSLRASFAHIPVNTVDGFQGREGE 814
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
V IS+VRSN VGFL D RR+NVA+TRA H+ +V DS TI
Sbjct: 815 VVAISLVRSNRKHEVGFLKDVRRLNVAVTRAKCHLLIVGDSETIA 859
>gi|347965371|ref|XP_322028.4| AGAP001133-PA [Anopheles gambiae str. PEST]
gi|333470541|gb|EAA01007.4| AGAP001133-PA [Anopheles gambiae str. PEST]
Length = 1161
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 137/440 (31%), Positives = 213/440 (48%), Gaps = 58/440 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + + +LV AP+N AVD + EK+ L +VR
Sbjct: 473 QRPLSLIQGPPGTGKTVTSATIVYQLARLNSGPILVCAPSNTAVDQLTEKIHRTNLKVVR 532
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V AR A+ S + +++ + E KK Q LKD++ + +
Sbjct: 533 VC--ARSREAIDSPVSFLALHNQIRNMAQNSELKK-------LQQLKDETGELSLSD--E 581
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--------------- 413
+ ++LKK+ + +E+L +A V+ T GA D ++R+ ++
Sbjct: 582 RRYRSLKKQAE---RELLEAADVICCTCVGAGDLRLQRIKFNSILIDESMQSTEPECMVP 638
Query: 414 ----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYRM+
Sbjct: 639 VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVAL--GIRPFRLEVQYRMHPE 696
Query: 470 IASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
++ + S Y GSL + L VD P+ P CP+ L T+ G EE
Sbjct: 697 LSQFPSNFFYEGSLQNGVCADERKLKVDFPWPSP----DCPMFFLVTQ--------GQEE 744
Query: 529 HLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+AG+G S+ N EA V + AG+ P I + +PY Q +L + +
Sbjct: 745 ---IAGSGTSYLNRTEASNVEKITTRFLKAGIKPDQIGIITPYEGQRAYLVQYMQYQGSL 801
Query: 588 AG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+E+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA + +V
Sbjct: 802 HSKLYQEIEIASVDAFQGREKDIIIMSCVRANEHQGIGFLNDPRRLNVALTRAKYGIIIV 861
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL +
Sbjct: 862 GNPKVLAKQELWNHLLNFYK 881
>gi|195396575|ref|XP_002056906.1| GJ16782 [Drosophila virilis]
gi|194146673|gb|EDW62392.1| GJ16782 [Drosophila virilis]
Length = 1219
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 140/457 (30%), Positives = 216/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+Q VLV AP+N AVD
Sbjct: 462 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKQHAGTVLVCAPSNTAVD 519
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 520 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRNMETNSELKKL 568
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ T ++L +A V+ T GA D + R+
Sbjct: 569 QQLKDET-----GELSSADEKRYRSLKRGTENQLLEAADVICCTCVGAGDVRLSRIKFTS 623
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 624 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 682
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 683 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 737
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AG+ P I + +PY
Sbjct: 738 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY 786
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 787 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 846
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 847 RRLNVALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYK 883
>gi|221508630|gb|EEE34199.1| DNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 1320
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 176/585 (30%), Positives = 250/585 (42%), Gaps = 171/585 (29%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +SQK+A+ LGL + R L +I GPPGTGK+ L E++ + +G RVL AP+N AVD
Sbjct: 277 TLTESQKRAVLLGL-RSRDLALIHGPPGTGKSTALLELLLQLASRGARVLACAPSNVAVD 335
Query: 294 NMVEK---LSDVGLNI--------------VRVGNPARISPAVASKSL-GEIVKSKLASF 335
N++E+ ++V N VR+G+PAR+ ++ L ++ +S+ A+
Sbjct: 336 NLLERVAAFANVNSNASLEASRLAGRLRRCVRLGHPARVDENLSRFCLESQVQRSEGAAL 395
Query: 336 VAEF------------ERKKSDLRKDLRQCLKDDSLAAGI-------------------- 363
E +RKK + RQ S G+
Sbjct: 396 SREIRLELDRSLEMLRDRKKLERHMQRRQKETRGSGPTGLGESSALSSSTRASTWSQAKR 455
Query: 364 --RQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG----------------------- 398
R+ ++ L + L+ E+ V+EVL + +V AT G
Sbjct: 456 ELREEIQTLRRELRAFERRAVEEVLEQSPIVFATCVGSDNEALKQFFAPPGDASGKPGRS 515
Query: 399 ---------AADPLIRRLDTFDLV-------------GKRCILAGDQCQLAPVILSRKAL 436
AA +R L F LV G R +LAGD CQL P I SRKA
Sbjct: 516 GFDVVVIDEAAQASLRLLPLFVLVAALEAVCWIPLLYGHRAVLAGDHCQLPPTIKSRKAE 575
Query: 437 EGGIGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMYGGSLISSSTVASHLL- 494
+GG+GV+L ER G ++L TQ+RM+ I W++++ Y G+L ++ +VAS LL
Sbjct: 576 DGGLGVTLFERQMHAQHGPRISQLLDTQFRMHRKIMGWSNEQFYHGALRAADSVASRLLE 635
Query: 495 VDTPFVK------------------------------PTWITQC---PLLLLDT------ 515
P +K T+ T C P L +DT
Sbjct: 636 AKYPRLKDETEHRGKRGEADLGQRADSSPGKRADGELETFAT-CVAPPFLWIDTAGVSWL 694
Query: 516 -----RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA-GVSPSAIAVQSP 569
+ L L S N GEA +VV + L+ GV P I + +P
Sbjct: 695 EEDNQEEDHSLLRQASASSTALQLHASKSNRGEAALVVKRLQDLVWNFGVKPEDICIITP 754
Query: 570 YVAQVQHLRERL------------------------DDLPEA-AGVEVATIDSFQGREAD 604
Y QVQ LR+ L D L + A + V T+D FQGRE +
Sbjct: 755 YRQQVQLLRQYLREAAEAAPALALGKKEGEARERETDSLRASFAHIPVNTVDGFQGREGE 814
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
V IS+VRSN VGFL D RR+NVA+TRA H+ +V DS TI
Sbjct: 815 VVAISLVRSNRKHEVGFLKDVRRLNVAVTRAKCHLLIVGDSETIA 859
>gi|255013517|ref|ZP_05285643.1| putative helicase [Bacteroides sp. 2_1_7]
gi|410103629|ref|ZP_11298550.1| hypothetical protein HMPREF0999_02322 [Parabacteroides sp. D25]
gi|409236358|gb|EKN29165.1| hypothetical protein HMPREF0999_02322 [Parabacteroides sp. D25]
Length = 640
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 160/513 (31%), Positives = 251/513 (48%), Gaps = 77/513 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEV----------KLDGIMGKTFDDSQKKAIALGLNKKRP 252
T+F DV + N L+ +V +L I + SQ++A+ L K+
Sbjct: 146 TMFSALSDVMRAKNNQLSHLRDVLLGQEKPGQRELFPIRFPWLNRSQEEAVNKVLGAKQ- 204
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL D G+N++R+GNP
Sbjct: 205 VSIVHGPPGTGKTTTLVEAIYETLHRENQVIVCAQSNTAVDCISEKLVDRGINVLRIGNP 264
Query: 313 ARISPAVASKSLGEIVKS-----KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
RI+ + S + +S +L S +S++RK R+ + D+ IR L
Sbjct: 265 TRINDKMLSFTYERRFESHPDYPELWSIRKAVRDIQSNMRKKSRE--ERDT----IRNRL 318
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------------- 412
+L + E + E+ A+VV T G+A+ ++ R T +
Sbjct: 319 SRLKFRATELEVKIDTELFDEARVVACTLVGSANRVMMNRHFTTLFIDEAAQALEAACWI 378
Query: 413 -VGK--RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
+GK R ILAGD QL P I +A G+G +L+++ A ++ L QYRM++
Sbjct: 379 AIGKADRVILAGDHHQLPPTIKCIEAEREGLGRTLMQKIAHTKPETVSL-LKIQYRMHED 437
Query: 470 IASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWI--TQCPLLLLDTRLPYGSLSLG 525
I ++S+ Y L S+ V+ L +DTP V W ++C +TR
Sbjct: 438 IMRFSSQWFYHNELESAPEVSGRGILRLDTPIV---WFDTSECDFTE-NTR--------- 484
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ-------SPYVAQVQHLR 578
EE T S N EAE++V + S I +S + + SPY AQVQ++R
Sbjct: 485 -EE------TMSRVNRQEAELLVEQLRSYI-QKISKERVLEENIDFGLISPYKAQVQYIR 536
Query: 579 ERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+ + P + + T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITR
Sbjct: 537 KLIKQDAFFKPLRRLITIHTVDGFQGQERDVILISLVRANEDGKIGFLNDLRRMNVAITR 596
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
A + ++ D+ST+ + F L +I G++
Sbjct: 597 ARMKLMILGDASTLTRHAFYNELYNYISQRGKI 629
>gi|281421454|ref|ZP_06252453.1| DNA helicase [Prevotella copri DSM 18205]
gi|281404526|gb|EFB35206.1| DNA helicase [Prevotella copri DSM 18205]
Length = 688
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 138/460 (30%), Positives = 218/460 (47%), Gaps = 69/460 (15%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+GNP R
Sbjct: 238 IVHGPPGTGKTTTLVEAINETLMRETQVLVCAQSNMAVDWISEKLVDRGINVLRIGNPTR 297
Query: 315 ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAA-GIRQLLKQLGKT 373
++ K LG + + S A++ + + +RK +R+ K+ + Q + +L
Sbjct: 298 VN----DKMLGFTYERRFESH-ADYPQLWA-IRKAIRELRKNRKKGSENYHQKMDRLKSR 351
Query: 374 LKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------------GK 415
+ E E+ A+V+ T G+A L+ + L
Sbjct: 352 AAEIELRINAELFGEARVIACTLVGSAHHLLEGMKFGTLFIDEAAQALEAACWIPMRRAS 411
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
R ILAGD CQL P + S AL G+G +L+ER A ++ + T L QYRMND I ++S
Sbjct: 412 RVILAGDHCQLPPTVKSIAALRAGLGKTLMERIAE-NKPEVVTLLKIQYRMNDEIMRFSS 470
Query: 476 KEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-------- 527
YGG + S+ + ++D P+ +DT +++ E
Sbjct: 471 DWFYGGKVESAPQIKYRSVLD---------YDHPITWIDTSNEENQITIEGEDAPEDSVS 521
Query: 528 ---------EHLDLAGTGSFY-------NEGEAE---IVVHHVFSLICAGVSPSA---IA 565
++ DL F N+ EAE + + F+ I +
Sbjct: 522 TSSSVSAANQNSDLNFKEQFVGESFGRINKAEAELTLLTLAEYFTKIGKQRVLEERIDVG 581
Query: 566 VQSPYVAQVQHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
+ SPY AQVQ+L++ + P + V T+D FQG+E D ++IS+VRSN G +GF
Sbjct: 582 IISPYRAQVQYLKKLIKKYEFFKPYRRLISVNTVDGFQGQERDVILISLVRSNDEGQIGF 641
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
L D RRMNVA+TRA + ++ + T+ + F +L ++
Sbjct: 642 LKDLRRMNVAMTRARMKLIILGNKDTMTKHPFYKKLWEYV 681
>gi|385304861|gb|EIF48863.1| hexameric dna polymerase alpha-associated dna helicase a involved
in lagging strand dna synthesis [Dekkera bruxellensis
AWRI1499]
Length = 703
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 160/611 (26%), Positives = 270/611 (44%), Gaps = 108/611 (17%)
Query: 127 IQGFVHNLGEDGCTISVALESRHG-----DPTFSKLFGKSVRIDRIQGLADTLTYERNCE 181
++G + ++ E ++V ++ + +L+G RI I L++ +TY R
Sbjct: 81 VEGVIISVSEKKINVAVNIDHTTNRGXXLEEKIYQLYGSGCRI-WIVKLSNEITYNRMES 139
Query: 182 ALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKK 241
+ L + L + ++ L L E+ + K+D + SQKK
Sbjct: 140 TMRKLSEMSLSQE----TQIMQLL--------LGESQFSPVKSFKIDXYYNSGLNSSQKK 187
Query: 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV-------------QQGERVLVTAPT 288
AI ++ L II GPPGTGKT + E++ + + + R+L+ P+
Sbjct: 188 AIEFSMSNN--LSIIHGPPGTGKTSTIVELVKQLITFKRSSTASSVPGRTANRILICGPS 245
Query: 289 NAAVDNMVEKLSDVGLN------IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
N +VD ++E+LSD N +VR+G+PARI P + SL IV+ ++
Sbjct: 246 NISVDTILERLSDFISNNGGYDKLVRIGHPARILPQILKHSLDMIVERNSHEVISGIMED 305
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
L K LR+ +K + Q +K L + L+ ++ + + +A+VV+AT G++
Sbjct: 306 MDSLTKKLRK-VKHYKDRRELYQEMKDLKRDLRSSTRKGFSDSILNAEVVVATLHGSSSQ 364
Query: 403 LI-----RRLDTFDLVG----------------------KRCILAGDQCQLAPVILSRKA 435
+ D FD + K+ I+AGD QL+P I ++K
Sbjct: 365 QLVNCIRENGDLFDTLIIDEVSQSLEPSCWIPLIYHKSIKKJIIAGDNKQLSPTIKTKKN 424
Query: 436 LEGG--IGVSLLERAATLHE--GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
+ + ++ +R + + L QYRMN+ I + S+ +Y L++ S+V
Sbjct: 425 KKVAKLLXTTMFDRLLKVQKRPENFVCFLNVQYRMNEKIMKFPSESLYNKRLVADSSVKD 484
Query: 492 HLLVD--------------TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS 537
++ D + P++ DT G + D + T S
Sbjct: 485 GIVKDLLNDRQATGVSGENPNDNDDEDDIKEPIIWYDTE---GGSFPEMSSNXDGSITPS 541
Query: 538 FYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE------------------ 579
YN+GE +V+ HV SL+ GV I + +PY AQV LR+
Sbjct: 542 RYNDGECLVVLKHVKSLLSRGVHQDEIGIITPYSAQVTKLRQLFRSGTLNFADDDDXDNE 601
Query: 580 --RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
+D+ +E++T+D FQGRE + +I+S+VRSN VGFL D +R+NV+ITR K
Sbjct: 602 KKYIDEQSLLDKIEISTVDGFQGREKEIIILSLVRSNEKHNVGFLSDEKRLNVSITRCKK 661
Query: 638 HVAVVCDSSTI 648
+ VV D TI
Sbjct: 662 QLCVVGDFDTI 672
>gi|345567573|gb|EGX50503.1| hypothetical protein AOL_s00075g232 [Arthrobotrys oligospora ATCC
24927]
Length = 1147
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 145/429 (33%), Positives = 205/429 (47%), Gaps = 75/429 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT I+ + G +VLV AP+N AVD + EK+ L +VR
Sbjct: 463 QKPLSLIQGPPGTGKTVTSATIVYHLAKLSGSQVLVCAPSNVAVDQLTEKIHRTSLKVVR 522
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R + V+ SL E V+ +L K LRQ LKD+ + +L
Sbjct: 523 LTAKSREDVESQVSFLSLHEQVR---------INNTNVELVK-LRQ-LKDE-----LGEL 566
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD--------------- 411
Q K K + KE+L++A V+ T GA DP RL F
Sbjct: 567 SLQDEKKFKHLTRAAEKEILTNADVICCTCVGAGDP---RLAKFKFRTVLIDESTQSAEP 623
Query: 412 -------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
L K+ +L GD QL PVI+++KA G+ SL ER L G +L QY
Sbjct: 624 ECMIPLVLGCKQLVLVGDHQQLGPVIMNKKAARAGLHQSLFERLVIL--GCAPIRLNVQY 681
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM+ ++ + S Y GSL + TV L + F P + P++ +L
Sbjct: 682 RMHPCLSEFPSNMFYEGSLQNGVTVQERLRRNVDFPWP--VVDSPMMFWS--------NL 731
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ--------- 575
G EE + +GT S+ N EA + AGVSPS I + +PY Q
Sbjct: 732 GNEE-ISASGT-SYLNRTEAAACEKIISKFFKAGVSPSQIGIITPYEGQRSYIVSSMQTN 789
Query: 576 --HLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAIT 633
H +E D +EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+T
Sbjct: 790 GSHKKELYKD------IEVASVDAFQGREKDYIVLSCVRSNDHQGIGFLNDPRRLNVALT 843
Query: 634 RACKHVAVV 642
RA V ++
Sbjct: 844 RAKYGVVIL 852
>gi|1575536|gb|AAC50771.1| regulator of nonsense transcript stability [Homo sapiens]
Length = 1118
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 138/439 (31%), Positives = 210/439 (47%), Gaps = 63/439 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ A Q VLV AP+N AVD + EK+ GL +VR
Sbjct: 484 QRPLSLIQGPPGTGKTVTSATIVYHLARQDNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 543
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 544 LCPKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 592
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 593 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 645
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 646 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 703
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 704 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------G 753
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 754 QEE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 810
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 811 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 870
Query: 640 AVVCDSSTICHNTFLARLL 658
+V + + LL
Sbjct: 871 IIVGNPKALSKQPLWNHLL 889
>gi|167764772|ref|ZP_02436893.1| hypothetical protein BACSTE_03163 [Bacteroides stercoris ATCC
43183]
gi|167697441|gb|EDS14020.1| putative DNA helicase [Bacteroides stercoris ATCC 43183]
Length = 631
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 154/515 (29%), Positives = 240/515 (46%), Gaps = 91/515 (17%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTF-----------DDSQKKAIALGLNK-- 249
T+F EDV + N LA+ ++ L G + F + +Q+ A+ NK
Sbjct: 148 TMFEALEDVLRAKGNRLAELRDILL-GTVKTGFRELYPVRFPWLNSTQESAV----NKVL 202
Query: 250 -KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R
Sbjct: 203 CARDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNMAVDWISEKLVDRGVNVLR 262
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAA------- 361
+GNP R V K+ SF E + L +L K+ L
Sbjct: 263 IGNPTR-------------VNDKMLSFTYERRFENHPLYPELWSIRKELRLLGGKSRRGS 309
Query: 362 -----GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-- 412
GIR + +L E + E+ SA V+ +T + L+ RR T +
Sbjct: 310 YDEREGIRNRMSRLRDRATTLEIQINSELFDSAHVIASTLVSSNHRLLNGRRFGTLFIDE 369
Query: 413 --------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R +LAGD CQL P I +A GG+ +L+E+ ++
Sbjct: 370 AAQALEAACWIAIRKADRVVLAGDHCQLPPTIKCYEAARGGLERTLMEKVVAGKPSAVSL 429
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRM++ I ++S YGG L ++ + ++D W T P+ LDT
Sbjct: 430 -LKVQYRMHEDIMRFSSDWFYGGELEAAPEIRHRGILD-------WDT--PVTWLDTS-- 477
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYV 571
+ +E + T N+ EA +++ + + I + + I + SPY
Sbjct: 478 ----EMDFKEEF-VGETFGRINKEEAGLLLKELEAYI-QRIGGNRILEERIDFGLISPYK 531
Query: 572 AQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
AQVQ+LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RR
Sbjct: 532 AQVQYLRGKIKGSASLRPYRSLITVNTVDGFQGQERDVIFISLVRANEEGQIGFLNDLRR 591
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
MNVAITRA + ++ +++T+ H+ F +LL ++R
Sbjct: 592 MNVAITRARMKLVILGEAATLSHHAFYKKLLEYVR 626
>gi|327404581|ref|YP_004345419.1| DEAD-like helicase [Fluviicola taffensis DSM 16823]
gi|327320089|gb|AEA44581.1| DEAD-like helicase [Fluviicola taffensis DSM 16823]
Length = 591
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 138/473 (29%), Positives = 235/473 (49%), Gaps = 85/473 (17%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
++SQ++A+ L+ +IQGPPGTGKT L IA V +G++VLVTAP+N AVDN
Sbjct: 163 LNNSQQEAVGAILSSDLTT-VIQGPPGTGKTHTLSIAIAELVNRGKKVLVTAPSNTAVDN 221
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVK-SKLASFVAEFERKKSDLRKDLRQC 353
+ +KL ++++RVGN ++S V ++ ++ K A + +++ + +
Sbjct: 222 LCKKLIAAKISLLRVGNNEKVSAEVIPYTIDAYLEGGKTAQYSQTIKKQIQKTEQVANRT 281
Query: 354 LKDDSLAAG-----IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD 408
+++ + A ++ L++L K L+K ++T ++++ S+ V+ T + L +
Sbjct: 282 IRNYTKEAADEKRQAKRDLRELQKELRKLAQDTEQQLIESSSVIAGTPVALFNALSKDA- 340
Query: 409 TFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAA 449
+FD+V GK+ +L GD QL PV+ S KA+E G+ SLLE +
Sbjct: 341 SFDVVILDEAGQSLAPLTWLVATFGKKLVLCGDPQQLPPVVFSNKAIELGLNKSLLETVS 400
Query: 450 TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCP 509
L + VL L QYRM I S + Y L ++
Sbjct: 401 HLQKPVL---LNEQYRMAPEIVSTINPYFYNNELQTA----------------------- 434
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAG----------TGSFYNEGEAEIVVHHVFSLICAGV 559
+P G + + +D+AG TGSF N E ++V + S +
Sbjct: 435 -----IGIPSGEI-----QFIDMAGFGNGETENETTGSFENWDEVKVVRKLIES---ESL 481
Query: 560 SPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE--VATIDSFQGREADAVIISMVRSNTLG 617
+P+ + +PY AQ+ L++ + G E V+TID+ QG+E + ++IS RSN G
Sbjct: 482 NPTQTTIIAPYSAQIALLQKTM-------GTEWHVSTIDAIQGQEEENIVISFTRSNPDG 534
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+GFL D RR NVAI+RA + ++ DS+T+ +++F ++L+ I G + A
Sbjct: 535 IIGFLRDYRRTNVAISRAKRKCYLIGDSATLGNDSFYSQLIHEIETNGVYRSA 587
>gi|380696742|ref|ZP_09861601.1| helicase [Bacteroides faecis MAJ27]
Length = 652
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 221/450 (49%), Gaps = 60/450 (13%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL+D G+ ++R+G
Sbjct: 225 RDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLADRGVAVLRIG 284
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLAA--GIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 285 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRS 338
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E ++ SA+V+ +T + L+ RR T +
Sbjct: 339 RMSRLRDRATELEILINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAAQALEAAC 398
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 399 WIAIRKADRVILAGDHCQLPPTIKCIEAARGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 457
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+AI + S+ Y G L ++ V + L DTP WI + D + S G
Sbjct: 458 EAIMRFPSEWFYNGELEAAPEVRNRGILDFDTPM---NWIDTSEM---DFHEEFVGESFG 511
Query: 526 ----CEEHLDLAGTGSFYNE-GEAEIVVHHV-FSLICAGVSPSAIAVQSPYVAQVQHLRE 579
E +L L ++ N G+ I+ + F LI SPY AQVQ+LR
Sbjct: 512 RINKQEANLLLQELEAYINRIGKTRILDERIDFGLI------------SPYKAQVQYLRS 559
Query: 580 RLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITRA
Sbjct: 560 KIRGNSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAITRA 619
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+ ++ D++T+ + F +L+++IR G
Sbjct: 620 RMKLVILGDATTLAQHPFYRKLMQYIRQSG 649
>gi|357060587|ref|ZP_09121355.1| hypothetical protein HMPREF9332_00912 [Alloprevotella rava F0323]
gi|355375892|gb|EHG23160.1| hypothetical protein HMPREF9332_00912 [Alloprevotella rava F0323]
Length = 640
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 143/473 (30%), Positives = 229/473 (48%), Gaps = 93/473 (19%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ++A+ L R L+I+ GPPGTGKT L E I +++ +V+V A +N AVD + E
Sbjct: 185 SQEQAVNDVL-AARDLMIVHGPPGTGKTTTLVEAIMEVMRREPQVMVCAQSNMAVDWISE 243
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
+L+D G++++R+GNP+R++ K+ SF +ER+ + D
Sbjct: 244 QLADRGVSVLRIGNPSRVT-------------DKMLSFT--YERRF--------ESHPDY 280
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKE-------------------VLSSAQVVLATNTG 398
S IR+ ++QL T +K E+ + + ++VV T G
Sbjct: 281 STLWSIRRTIRQLYATPRKGRSESFHQKITRLRERADELELRIRNALFDQSRVVACTLVG 340
Query: 399 AADPLIRRLDTFDLV------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
+A+ L++ + L R +LAGD CQL P I S A GG+
Sbjct: 341 SANQLLQGIHFHTLFIDEAAQALEPACWIALRKCDRFVLAGDHCQLPPTIKSNAARYGGL 400
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH-LLVDTPF 499
+L+E A H + LT QYRMN+A+ ++S+ Y G L ++ V+ ++ D
Sbjct: 401 DKTLMETLAETHPEAVRL-LTVQYRMNEALMRFSSEWFYEGKLQAAPEVSHRGIMAD--- 456
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF--YNEGEAEIVVHHVFS---- 553
PL+ +DT G S G E+ + S+ N+ EA + + +
Sbjct: 457 ------MDEPLVWVDT---AGEDSEGQEDFHEQFIGASYGRINKAEARLTLATLIDYTER 507
Query: 554 -----LICAGVSPSAIAVQSPYVAQVQHLRERLDD----LPEAAGVEVATIDSFQGREAD 604
L+ + I + SPY AQVQ+LR L P + + T+D+FQG+E D
Sbjct: 508 IGRQRLLEERID---IGIISPYKAQVQYLRALLKKNAYLRPLRKSITINTVDAFQGQERD 564
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
+++S+VR+N G +GFL D RRMNVAITRA + ++ S+T+C + F +L
Sbjct: 565 VILVSLVRANETGEIGFLNDLRRMNVAITRARMKLIILGASTTLCRHKFYKKL 617
>gi|270295956|ref|ZP_06202156.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270273360|gb|EFA19222.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 637
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 139/458 (30%), Positives = 219/458 (47%), Gaps = 76/458 (16%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+G
Sbjct: 211 RDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWISEKLVDRGVNVLRIG 270
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSD---------LRKDLRQCLKDDSLAA 361
NP R V K+ SF +ER+ + +RK+LR+ +
Sbjct: 271 NPTR-------------VNDKMLSFT--YERRFENHPLYPELWSIRKNLRELGSRARRGS 315
Query: 362 -----GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-- 412
G+R + +L E + E+ A V+ +T + L+ RR T +
Sbjct: 316 YDEREGVRSRMSRLRDRATALEIQINSELFDGAHVIASTLVSSNHRLLNGRRFGTLFIDE 375
Query: 413 --------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R +LAGD CQL P I +A GG+ +L+E+ + V++
Sbjct: 376 AAQALEAACWIAIRKADRVVLAGDHCQLPPTIKCYEAARGGLERTLMEKVVSNKPAVVSL 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRM++ I + S+ Y G L ++ V ++D W T P+ +DT
Sbjct: 436 -LKVQYRMHEEIMKFPSQWFYNGELEAAPEVRYRGILD-------WDT--PIHWIDTS-- 483
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYV 571
+ +E + T N+ EA++++ + + +S + I + SPY
Sbjct: 484 ----EMDFKEEF-VGETFGRINKAEADLLLSEL-KIYINRISGNRILEEKIDFGIISPYK 537
Query: 572 AQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
AQVQ+LR ++ P + V T+D FQG+E D + IS+VR+N G +GFL D RR
Sbjct: 538 AQVQYLRNKIKADASLKPYRSLFTVNTVDGFQGQERDVIFISLVRANEEGQIGFLNDLRR 597
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
MNVAITRA + ++ ++ T+ H+ F +LL I+ G
Sbjct: 598 MNVAITRARMKLVIMGEADTLKHHGFYRKLLEFIQNIG 635
>gi|164659902|ref|XP_001731075.1| hypothetical protein MGL_2074 [Malassezia globosa CBS 7966]
gi|159104973|gb|EDP43861.1| hypothetical protein MGL_2074 [Malassezia globosa CBS 7966]
Length = 1019
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 221/445 (49%), Gaps = 71/445 (15%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT +I VQ ++LV AP+N AVD + EKL GL +VR+
Sbjct: 462 PLSLIQGPPGTGKTVTSASLIYHLVQMKRGKILVCAPSNVAVDQLTEKLHRTGLKVVRLV 521
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK-- 368
+ R E + S++ F+A L + + Q ++ L+ I Q
Sbjct: 522 SRMR-----------ETISSQV-RFLA--------LHEQVAQVEENTELSHLIEQKRNNG 561
Query: 369 QLGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPLIRRLDTFDL-----------V 413
+L +++ + V +E+L +A V+ T + +AD RRL +++ V
Sbjct: 562 ELSTMEERRYRSQVFQREREILDAADVICTTCSSSAD---RRLHSYEFQTVLIDEATQAV 618
Query: 414 GKRC-----------ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
C +L GD QL PV+L+RK + G+ +SL ER L GV +L
Sbjct: 619 EPECLIPIVRGCRQLVLVGDHKQLGPVVLNRKVADAGMNLSLFERLVLL--GVKPRRLEV 676
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ A++ + S Y G L + V++H + P + P++
Sbjct: 677 QYRMHPALSEFPSNMFYDGML--QNGVSAHERLRRNVAIPWPVPNMPMMFYQ-------- 726
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQHLR 578
+LG EE + +GT S+ N EA V V +L+ AGV+ I V +PY Q + +++
Sbjct: 727 NLGQEE-ISASGT-SYLNRTEASSVEKLVTTLLKAGVAAEHIGVVTPYEGQRNFVINYMQ 784
Query: 579 ERLDDLPEAA-GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
+ +A VEVA++D+FQGRE D +I+S VRSN+ +GFL D RR+NVA+TRA
Sbjct: 785 LHGSMMKDAYRNVEVASVDAFQGREKDYIIVSCVRSNSSLGIGFLSDPRRLNVALTRARF 844
Query: 638 HVAVVCDSSTICHNTFLARLLRHIR 662
+ ++ + +C N LL H +
Sbjct: 845 GLILIGNPRILCKNPLWYHLLVHFK 869
>gi|359405877|ref|ZP_09198604.1| putative DNA helicase [Prevotella stercorea DSM 18206]
gi|357557227|gb|EHJ38779.1| putative DNA helicase [Prevotella stercorea DSM 18206]
Length = 622
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 138/463 (29%), Positives = 216/463 (46%), Gaps = 74/463 (15%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ++A+ L K + ++ GPPGTGKT L E I +++ +VLV A +N AVD + E
Sbjct: 189 SQQQAVNEVLRAK-DVAVVHGPPGTGKTTTLVEAIYETLRRESQVLVCAQSNMAVDWIAE 247
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDL 350
KL D G+N++R+GNP R V K+ SF E FE +RK +
Sbjct: 248 KLVDRGVNVLRIGNPTR-------------VNDKMLSFTYERRFEAHPDYPQLWSIRKAI 294
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLD 408
R+ + + Q + +L + E + A+V+ T TGAA+ ++ +
Sbjct: 295 RELRGERRRSDAWHQKMDRLKSRATEIELRIRASLFGEARVIACTLTGAANRVLEGEKFS 354
Query: 409 TFDL----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
T + R I AGD CQL P + S AL+GG+G++L+ER
Sbjct: 355 TLFIDEAAQALEAACWIAIRRAGRVIFAGDHCQLPPTVKSIMALKGGLGITLMERIVKAK 414
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
V+ T L QYRMN+ I ++S YGG + ++ + ++D P++
Sbjct: 415 PDVV-TLLKVQYRMNEQIMRFSSDWFYGGEVQTAPGIERRSILD---------YDRPMMW 464
Query: 513 LDTRLPYGSLSL---------GCEEHLDLAGTGSFYNE-GEAEIVVHHVFSLICAGVSPS 562
+DT G E L L ++ + G+ I+ H+
Sbjct: 465 VDTSEAEGKEEFVGENFGRINRTEAELTLQTLQQYFEKIGKQRILDEHI----------- 513
Query: 563 AIAVQSPYVAQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA 618
+ + SPY AQVQ L + + P + V T+D FQG+E D ++IS+VR+N
Sbjct: 514 DVGIISPYRAQVQLLHKMIRQSEFFRPYRRAISVNTVDGFQGQERDIIVISLVRNNDGKE 573
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+GFL D RRMNVAITRA + ++ ++T+ + F +L I
Sbjct: 574 IGFLRDLRRMNVAITRARMKLIILGSAATMTAHPFYKKLYEWI 616
>gi|134109641|ref|XP_776499.1| hypothetical protein CNBC4250 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259177|gb|EAL21852.1| hypothetical protein CNBC4250 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1089
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 145/465 (31%), Positives = 219/465 (47%), Gaps = 73/465 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + +VLV AP+N AVD
Sbjct: 453 LNHSQMSAVKAVLQK--PLSLIQGPPGTGKTVTSASIVYHLAKMNPGQVLVCAPSNVAVD 510
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ EK+ GL +VR+ +R E + S + + +D +L++
Sbjct: 511 HLCEKIHQTGLKVVRLAAKSR-----------EALDSSVDFLSLHSQVANADTHHELQKL 559
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVK----EVLSSAQVVLATNTGAADPLIRRLDT 409
++ +R +L ++ ++K K VK ++L++A V+ T GA DP RL
Sbjct: 560 IQ-------LRNDQGELSQSDERKYKALVKACEKDILNAADVICTTCVGAGDP---RLAK 609
Query: 410 FDL---------------------VG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
F +G K+ +L GD QL PVI+++KA G+ SL ER
Sbjct: 610 FKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARAGLSQSLFER 669
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
L G +L QYRM+ ++ ++S Y G+L + T L F P +
Sbjct: 670 LVIL--GNHPIRLQVQYRMHPCLSEFSSNLFYEGTLQNGVTAPERLRKHVDFPWP--VAD 725
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P+ +LG EE + +GT SF N EA V V +GV P+ I V
Sbjct: 726 TPMFFHQ--------NLGTEE-ISSSGT-SFLNRTEASNVEKMVTKFFKSGVLPNQIGVI 775
Query: 568 SPYVAQVQHLRERLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+PY Q ++ + DL + VEVA++D+FQGRE D +I+S VRSN +G
Sbjct: 776 TPYEGQRSYIASYMQLHGSLKKDLYKE--VEVASVDAFQGREKDYIILSCVRSNEHQGIG 833
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
FL D RR+NVA+TRA V ++ + + + LL H + G
Sbjct: 834 FLNDPRRLNVALTRAKYGVVILGNPKVLSKHPLWLYLLSHYKEKG 878
>gi|351713804|gb|EHB16723.1| Regulator of nonsense transcripts 1 [Heterocephalus glaber]
Length = 1068
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 133/419 (31%), Positives = 206/419 (49%), Gaps = 69/419 (16%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 436 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 495
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 496 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 544
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 545 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 597
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 598 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 655
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 656 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 704
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP 585
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 705 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYM---- 759
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
+ +G VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 760 QFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 818
>gi|308807923|ref|XP_003081272.1| RNA helicase, putative (ISS) [Ostreococcus tauri]
gi|116059734|emb|CAL55441.1| RNA helicase, putative (ISS) [Ostreococcus tauri]
Length = 963
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 219/456 (48%), Gaps = 59/456 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+DSQ A+ L +RPL ++QGPPGTGKT I+ ++G +V+V AP+N AVD
Sbjct: 432 LNDSQFNAVKEVL--ERPLSLVQGPPGTGKTVTSATIVYHLAKRGNGQVIVCAPSNVAVD 489
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ EK+ GL +VR+ + +R + + L + ++A+ + L+ +C
Sbjct: 490 HLAEKIEKTGLKVVRISSRSREHLVSSVEHL--TLHYQVANIGGATHKAFQKLQALKNEC 547
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
L+ G K K +K+ +++L +A V+ T GA DP + F +V
Sbjct: 548 ---GELSPGDE-------KKYKNAQKKLERDILENADVICTTAVGAGDPRLADF-RFRMV 596
Query: 414 --------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
K ++ GD QL PV+ ++A G+ SL ER L
Sbjct: 597 LIDESTQATEPECLIPIVMGAKHVVMVGDHRQLGPVVTCKQAHAAGLAQSLFERLIAL-- 654
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S + Y G L + + + L VD P+ P+ P++
Sbjct: 655 GIKPIRLGVQYRMHPCLSDFPSNKFYEGVLSNGVSASDRTLSHVDFPWPVPS----KPMM 710
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
S +E + +GT SF N EA V V L+ +GVSP I V +PY
Sbjct: 711 FW---------SQTGQEEMSASGT-SFLNRAEAVAVEKCVTHLLNSGVSPEDIGVVTPYE 760
Query: 572 AQ----VQHLRERLDDLPE-AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
Q VQH+ P+ ++VA++DSFQG+E D +I++ VRSN +GFL D R
Sbjct: 761 GQRAYVVQHMTRVGVLHPQLYKDIQVASVDSFQGKEKDFIIMTCVRSNEKSGIGFLSDPR 820
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
R+NVAITRA + ++ + + +L H R
Sbjct: 821 RLNVAITRARSGLIIIGNPKVLNKQLLFHDMLTHFR 856
>gi|406864055|gb|EKD17101.1| RNA helicase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 1098
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 135/426 (31%), Positives = 208/426 (48%), Gaps = 55/426 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
++SQ A+ L K PL +IQGPPGTGKT +I + G +VLV AP+N AVD
Sbjct: 452 LNNSQINAVKSVLQK--PLSLIQGPPGTGKTVTSATVIYHLAKVNGGQVLVCAPSNVAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL +VR+ +R E V+S + + + +D +L
Sbjct: 510 QLCERIHRTGLKVVRLTAKSR-----------EDVQSSVGFLSLHEQVRMNDSNLEL--- 555
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD----- 408
K L + + +L Q K K + +E+L++A V+ T GA DP + ++
Sbjct: 556 TKLSQLKSELGELSSQDEKKFKTLTRGAEREILTNADVICCTCVGAGDPRLAKMKFRTVL 615
Query: 409 --------------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
L K+ +L GD QL PVI+++KA + G+ SL ER L +
Sbjct: 616 IDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVQLGQN 675
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+ +L QYRM+ ++ + S Y GSL + T+ + D F P ++ P++
Sbjct: 676 PI--RLDVQYRMHPCLSEFPSNMFYEGSLQNGVTMVQRIRCDVDFPWP--VSDTPMMFWS 731
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT S+ N EA V V AGV P+ I V +PY Q
Sbjct: 732 --------NLGNEE-ISASGT-SYLNRTEASNVEKIVTRFFKAGVQPADIGVITPYEGQR 781
Query: 575 QHLRERLDDL-----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
++ + + +EVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 782 SYVVSSMQNTGTFKKENYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLN 841
Query: 630 VAITRA 635
VA+TRA
Sbjct: 842 VALTRA 847
>gi|403337792|gb|EJY68119.1| hypothetical protein OXYTRI_11366 [Oxytricha trifallax]
Length = 1153
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 138/444 (31%), Positives = 215/444 (48%), Gaps = 61/444 (13%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT ++ V+Q +VLV AP+N AVD + +K++ G+ +VR+
Sbjct: 576 PLCLIQGPPGTGKTVTSTTLVTHLVKQKMGKVLVCAPSNIAVDQLTDKINSTGIKVVRMC 635
Query: 311 NPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+R +S V SL E +K +++ K L ++L LK + +L +
Sbjct: 636 ARSRESVSSNVDYLSLHEQIK-----YLSHGPFK---LMQEL--ILKKEEQ----NELTE 681
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--------------- 413
+ + LK+ +++ E+L +A+V+ T A D RRL F
Sbjct: 682 KEERQLKELKRQAEDEILKNAEVICTTCVAAFD---RRLRNFKFSQVLIDEATQATEPET 738
Query: 414 -------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
K IL GD CQL PVI+ +KA + G+ SL ER L G+ +L QYRM
Sbjct: 739 LIPILRGAKHVILVGDHCQLGPVIMCKKAAKAGLNQSLFERLVCL--GIRPIRLQVQYRM 796
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
+ ++++ S Y GSL + + +L D F P ++ P++ Y S+S
Sbjct: 797 HPVLSAFPSMTFYEGSLQNGISKQDRILSDFKFQWPA--SEKPMMF------YHSIS--- 845
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD---- 582
E + +GT SF N EA V V + + P I + +PY Q + +
Sbjct: 846 NEEISASGT-SFLNRQEAYNVEALVTQFLKFDLKPEQIGIITPYEGQKAFITSYMQRSGQ 904
Query: 583 -DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAV 641
D +EVA++DSFQGRE D +++S VRSN +GFL D RR+NVA+TRA + +
Sbjct: 905 LDPSLYKEIEVASVDSFQGREKDFILLSCVRSNEASGIGFLNDPRRLNVALTRAKYGLVI 964
Query: 642 VCDSSTICHNTFLARLLRHIRYFG 665
++ + + LL + G
Sbjct: 965 FGNAKVLSKHDLWNNLLNEFKNQG 988
>gi|58264876|ref|XP_569594.1| ATP dependent helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57225826|gb|AAW42287.1| ATP dependent helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1090
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 145/465 (31%), Positives = 219/465 (47%), Gaps = 73/465 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + +VLV AP+N AVD
Sbjct: 453 LNHSQMSAVKAVLQK--PLSLIQGPPGTGKTVTSASIVYHLAKMNPGQVLVCAPSNVAVD 510
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ EK+ GL +VR+ +R E + S + + +D +L++
Sbjct: 511 HLCEKIHQTGLKVVRLAAKSR-----------EALDSSVDFLSLHSQVANADTHHELQKL 559
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVK----EVLSSAQVVLATNTGAADPLIRRLDT 409
++ +R +L ++ ++K K VK ++L++A V+ T GA DP RL
Sbjct: 560 IQ-------LRNDQGELSQSDERKYKALVKACEKDILNAADVICTTCVGAGDP---RLAK 609
Query: 410 FDL---------------------VG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
F +G K+ +L GD QL PVI+++KA G+ SL ER
Sbjct: 610 FKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARAGLSQSLFER 669
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
L G +L QYRM+ ++ ++S Y G+L + T L F P +
Sbjct: 670 LVIL--GNHPIRLQVQYRMHPCLSEFSSNLFYEGTLQNGVTAPERLRKHVDFPWP--VAD 725
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P+ +LG EE + +GT SF N EA V V +GV P+ I V
Sbjct: 726 TPMFFHQ--------NLGTEE-ISSSGT-SFLNRTEASNVEKMVTKFFKSGVLPNQIGVI 775
Query: 568 SPYVAQVQHLRERLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+PY Q ++ + DL + VEVA++D+FQGRE D +I+S VRSN +G
Sbjct: 776 TPYEGQRSYIASYMQLHGSLKKDLYKE--VEVASVDAFQGREKDYIILSCVRSNEHQGIG 833
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
FL D RR+NVA+TRA V ++ + + + LL H + G
Sbjct: 834 FLNDPRRLNVALTRAKYGVVILGNPKVLSKHPLWLYLLSHYKEKG 878
>gi|315607147|ref|ZP_07882151.1| helicase [Prevotella buccae ATCC 33574]
gi|315251201|gb|EFU31186.1| helicase [Prevotella buccae ATCC 33574]
Length = 634
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 141/444 (31%), Positives = 214/444 (48%), Gaps = 58/444 (13%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL+D G+N++R+GNP+R
Sbjct: 206 IVHGPPGTGKTTTLVEAINETLMRESQVMVCAQSNMAVDWICEKLTDRGINVLRIGNPSR 265
Query: 315 ISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC-LKDDSLAAGIRQL 366
V K+ SF E FE +RK +R+ + + Q
Sbjct: 266 -------------VNDKMLSFTYERRFESHPDYPQLWAIRKTIRELRSRRRRGSGDYHQK 312
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------------ 412
L++L + E E+ A+V+ +T G+A L+ ++ T +
Sbjct: 313 LERLKSRAAEIEIRINSELFGEARVIASTLVGSAHRLLDGQKYATLFIDEAAQALEAACW 372
Query: 413 ----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
R +LAGD CQL P + S AL G+G +L+ER ++ + T L QYRMN+
Sbjct: 373 IPIRKASRVVLAGDHCQLPPTVKSIAALRAGLGKTLMERIVE-NKPEVVTLLKVQYRMNE 431
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPT-WITQCPLLLLDTRLPYGSLSLGCE 527
I ++S Y G ++S+ + ++D + P W T L G
Sbjct: 432 QIMRFSSDWFYHGEVVSAPQIRHRGILD--YDHPMEWKTNS----LTPSPSSGEEGEAAG 485
Query: 528 EHLDLAGTGSFYNEGEAEI---VVHHVFSLICAGV---SPSAIAVQSPYVAQVQHLRERL 581
E + G N+GEAE+ + F+ I + + SPY AQVQ+LR+ +
Sbjct: 486 ESFVSSSFGRI-NKGEAELTLGTLEEYFTKIGKQRILDERIDVGIISPYRAQVQYLRQLI 544
Query: 582 DDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
P + V T+D FQG+E D ++IS+VRSN G +GFL D RRMNVAITRA
Sbjct: 545 RKREFFKPYRQCITVNTVDGFQGQERDIILISLVRSNDEGQIGFLRDLRRMNVAITRARM 604
Query: 638 HVAVVCDSSTICHNTFLARLLRHI 661
+ ++ D ST+ + F +L +I
Sbjct: 605 KLIILGDVSTLGRHPFYKKLWEYI 628
>gi|402304960|ref|ZP_10824023.1| AAA domain protein [Prevotella sp. MSX73]
gi|400380746|gb|EJP33559.1| AAA domain protein [Prevotella sp. MSX73]
Length = 621
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 217/450 (48%), Gaps = 58/450 (12%)
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+ + + I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL+D G+N++R
Sbjct: 187 RAKDVAIVHGPPGTGKTTTLVEAINETLMRESQVMVCAQSNMAVDWICEKLTDRGINVLR 246
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC-LKDDSLA 360
+GNP+R V K+ SF E FE +RK +R+ + +
Sbjct: 247 IGNPSR-------------VNDKMLSFTYERRFESHPDYPQLWAIRKTIRELRSRRRRGS 293
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------ 412
Q L++L + E E+ A+V+ +T G+A L+ ++ T +
Sbjct: 294 GDYHQKLERLKSRAAEIEIRINSELFGEARVIASTLVGSAHRLLDGQKYATLFIDEAAQA 353
Query: 413 ----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R +LAGD CQL P + S AL G+G +L+ER ++ + T L
Sbjct: 354 LEAACWIPIRKASRVVLAGDHCQLPPTVKSIAALRAGLGKTLMERIVE-NKPEVVTLLKV 412
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPT-WITQCPLLLLDTRLPYGS 521
QYRMN+ I ++S Y G ++S+ + ++D + P W T L G
Sbjct: 413 QYRMNEQIMRFSSDWFYHGEVVSAPQIRHRGILD--YDHPMEWKTNS----LTPSPSSGE 466
Query: 522 LSLGCEEHLDLAGTGSFYNEGEAEI---VVHHVFSLICAGV---SPSAIAVQSPYVAQVQ 575
E + G N+GEAE+ + F+ I + + SPY AQVQ
Sbjct: 467 EGEAAGESFVSSSFGRI-NKGEAELTLGTLEEYFTKIGKQRILDERIDVGIISPYRAQVQ 525
Query: 576 HLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
+LR+ + P + V T+D FQG+E D ++IS+VRSN G +GFL D RRMNVA
Sbjct: 526 YLRQLIRKREFFKPYRQCITVNTVDGFQGQERDIILISLVRSNDEGQIGFLRDLRRMNVA 585
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHI 661
ITRA + ++ D ST+ + F +L +I
Sbjct: 586 ITRARMKLIILGDVSTLGRHPFYKKLWEYI 615
>gi|392396283|ref|YP_006432884.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527361|gb|AFM03091.1| DNA/RNA helicase, superfamily I [Flexibacter litoralis DSM 6794]
Length = 661
Score = 178 bits (452), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 142/470 (30%), Positives = 227/470 (48%), Gaps = 65/470 (13%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
++SQK A+ + + + + II GPPGTGKT L I ++ +++V AP+N AVD +
Sbjct: 197 NESQKNAVQ-NILRAQDIAIIHGPPGTGKTTTLVAAIVETLKNERQIMVCAPSNTAVDWL 255
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
EKL+ + + R+G+PAR+S + +L G+I K + ++ +R+ +
Sbjct: 256 TEKLNAQNVKVTRLGHPARVSDTLEHLTLDGKIEKHPDYKYYKSLLKQSEQMRRKALKFK 315
Query: 355 KD-DSLAAGIRQLLKQLGKTLK----KKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
++ RQ + + K LK K E+ K VL +QV+ T G+A+ ++ T
Sbjct: 316 RNFGKQERSERQHMLRDAKRLKQDALKLEEYISKHVLEHSQVLACTLAGSANYMLNH-RT 374
Query: 410 FD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
F L R I+AGD QL P I S +A + G+ +L E+
Sbjct: 375 FSTLFIDEAAQALEGATWIPILKANRVIMAGDHQQLPPTIKSFEAAKSGLENTLFEKIIK 434
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
H A L+ QYRMN+ I +++++ Y G+L + T +H+L + P+
Sbjct: 435 NHPQT-ANMLSVQYRMNEQIMEFSNQKFYNGNLKAFETNKNHVL---------YQNLAPV 484
Query: 511 LLLDTRLPYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHV---FSLICAGVSPS---- 562
+DT GC + T S YN EA++VV H+ F I +
Sbjct: 485 EFVDT--------AGCGFSEMQNEETLSRYNPEEAKLVVSHLQVLFEEILLKIDNKEIEN 536
Query: 563 --------AIAVQSPYVAQVQHLRE--RLDDL--PEAAGVEVATIDSFQGREADAVIISM 610
++ V S Y AQV LR+ R +++ + + + T+D FQG+E + + IS+
Sbjct: 537 SKEFIDNFSVGVLSTYKAQVYLLRDLIRKNEVLSNYSNQITIHTVDGFQGQEREVMYISL 596
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
VRSN G +GFL D RR NVAITRA K + V DS+T+ + F L +
Sbjct: 597 VRSNEKGEIGFLKDFRRFNVAITRAKKRLVVFGDSATLGSDEFYKDFLDY 646
>gi|195553850|ref|XP_002076779.1| GD24645 [Drosophila simulans]
gi|194202769|gb|EDX16345.1| GD24645 [Drosophila simulans]
Length = 1180
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 216/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+ G VLV AP+N AVD
Sbjct: 452 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 510 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRNMETNSELKKL 558
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ + ++L +A V+ T GA D + R+
Sbjct: 559 QQLKDET-----GELSSADEKRYRSLKRASENQLLEAADVICCTCVGAGDGRLSRVKFTS 613
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 614 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 672
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 673 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 727
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AG+ P I + +PY
Sbjct: 728 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY 776
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 777 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 836
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 837 RRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYK 873
>gi|298375719|ref|ZP_06985676.1| DNA helicase [Bacteroides sp. 3_1_19]
gi|298268219|gb|EFI09875.1| DNA helicase [Bacteroides sp. 3_1_19]
Length = 640
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 161/513 (31%), Positives = 250/513 (48%), Gaps = 77/513 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEV----------KLDGIMGKTFDDSQKKAIALGLNKKRP 252
T+F DV + N L+ +V +L I + SQ++A+ L K+
Sbjct: 146 TMFSALSDVMRAKNNQLSHLRDVLLGQEKPRQRELFPIRFPWLNRSQEEAVNKVLGAKQ- 204
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL D G+N++R+GNP
Sbjct: 205 VSIVHGPPGTGKTTTLVEAIYETLHRENQVIVCAQSNTAVDCISEKLVDRGINVLRIGNP 264
Query: 313 ARISPAVASKSLGEIVKS-----KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
RI+ + S + +S +L S +S++RK R+ + D+ IR L
Sbjct: 265 TRINDKMLSFTYERRFESHPDYPELWSIRKAVRDIQSNMRKKSRE--ERDT----IRNRL 318
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------------- 412
+L + E + E+ A+VV T G+A+ ++ R T +
Sbjct: 319 SRLKFRATELEVKIDTELFDEARVVACTLVGSANRVMMNRHFTTLFIDEAAQALEAACWI 378
Query: 413 -VGK--RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
+GK R ILAGD QL P I +A G+G +L+++ A ++ L QYRM++
Sbjct: 379 AIGKADRVILAGDHHQLPPTIKCIEAEREGLGRTLMQKIAHTKPETVSL-LKIQYRMHED 437
Query: 470 IASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWI--TQCPLLLLDTRLPYGSLSLG 525
I ++S+ Y L S+ V+ L +DTP V W ++C +TR
Sbjct: 438 IMRFSSQWFYHNELESAPEVSGRGILRLDTPIV---WFDTSECDFTE-NTR--------- 484
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ-------SPYVAQVQHLR 578
EE T S N EAE++V S I +S + + SPY AQVQ++R
Sbjct: 485 -EE------TMSRVNRQEAELLVEQSRSYI-QKISKERVLEENIDFGLISPYKAQVQYIR 536
Query: 579 ERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+ + P + V T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITR
Sbjct: 537 KLIKQDAFFKPLRRLITVHTVDGFQGQERDVILISLVRANEDGKIGFLNDLRRMNVAITR 596
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
A + ++ D+ST+ + F L +I G++
Sbjct: 597 ARMKLMILGDASTLTRHAFYNELYNYISQRGKI 629
>gi|221488111|gb|EEE26325.1| DNA-binding protein, putative [Toxoplasma gondii GT1]
Length = 1320
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 174/584 (29%), Positives = 251/584 (42%), Gaps = 171/584 (29%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T +SQK+A+ LGL + R L +I GPPGTGK+ L E++ + +G RVL AP+N AVD
Sbjct: 277 TLTESQKRAVLLGL-RSRDLALIHGPPGTGKSTALLELLLQLASRGARVLACAPSNVAVD 335
Query: 294 NMVEK---LSDVGLNI--------------VRVGNPARISPAVASKSL-GEIVKSKLASF 335
N++E+ ++V N VR+G+PAR+ ++ L ++ +S+ A+
Sbjct: 336 NLLERVAAFANVNSNASLEASRLAGRLRRCVRLGHPARVDENLSRFCLESQVQRSEGAAL 395
Query: 336 VAE---------------------FERKKSDLRKDLRQCLKDDSLAAG------------ 362
E +RK+ + R L + S +
Sbjct: 396 SREIRLELDRSLEMLRDRKKLERHMQRKQKETRGSGPTGLGESSALSSSTRASTWSQAKR 455
Query: 363 -IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG----------------------- 398
+R+ ++ L + L+ E+ V+EVL + +V AT G
Sbjct: 456 ELREEIQTLRRELRAFERRAVEEVLEQSPIVFATCVGSDNEALKQFFAPPGDASGKPGRS 515
Query: 399 ---------AADPLIRRLDTFDLV-------------GKRCILAGDQCQLAPVILSRKAL 436
AA +R L F LV G R +LAGD CQL P I SRKA
Sbjct: 516 GFDVVVIDEAAQASLRLLPLFVLVAALEAVCWIPLLYGHRAVLAGDHCQLPPTIKSRKAE 575
Query: 437 EGGIGVSLLERAATLHEGVLATKL-TTQYRMNDAIASWASKEMYGGSLISSSTVASHLL- 494
+GG+GV+L ER G ++L TQ+RM+ I W++++ Y G+L ++ +VAS LL
Sbjct: 576 DGGLGVTLFERQMHAQHGPRISQLLDTQFRMHRKIMGWSNEQFYHGALRAADSVASRLLE 635
Query: 495 VDTPFVK------------------------------PTWITQC---PLLLLDT------ 515
P +K T+ T C P L +DT
Sbjct: 636 AKYPRLKDETEHRGKRGEADLGQRADSSPGKRADGELETFAT-CVAPPFLWIDTAGVSWL 694
Query: 516 -----RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA-GVSPSAIAVQSP 569
+ L L S N GEA +VV + L+ GV P I + +P
Sbjct: 695 EEDNQEEDHSLLRQASASSTALQLHASKSNRGEAALVVKRLQDLVWNFGVKPEDICIITP 754
Query: 570 YVAQVQHLRERL------------------------DDLPEA-AGVEVATIDSFQGREAD 604
Y QVQ LR+ L D L + A + V T+D FQGRE +
Sbjct: 755 YRQQVQLLRQYLREAAEAAPALALGKKEGEARERETDSLRASFAHIPVNTVDGFQGREGE 814
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
V IS+VRSN VGFL D RR+NVA+TRA H+ +V DS TI
Sbjct: 815 VVAISLVRSNRKHEVGFLKDVRRLNVAVTRAKCHLLIVGDSETI 858
>gi|195480688|ref|XP_002101353.1| GE17585 [Drosophila yakuba]
gi|194188877|gb|EDX02461.1| GE17585 [Drosophila yakuba]
Length = 1187
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 215/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+ G VLV AP+N AVD
Sbjct: 452 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 510 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRNMETNSELKKL 558
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ ++L +A V+ T GA D + R+
Sbjct: 559 QQLKDET-----GELSSADEKRYRSLKRAAENQLLEAADVICCTCVGAGDGRLSRIKFTS 613
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 614 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 672
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 673 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 727
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AG+ P I + +PY
Sbjct: 728 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY 776
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 777 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 836
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 837 RRLNVALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYK 873
>gi|440904008|gb|ELR54581.1| Regulator of nonsense transcripts 1 [Bos grunniens mutus]
Length = 1156
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 203/415 (48%), Gaps = 61/415 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 519 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 578
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 579 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 627
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 628 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 680
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 681 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 738
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 739 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 787
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 788 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 846
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA
Sbjct: 847 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA 901
>gi|325268516|ref|ZP_08135146.1| helicase [Prevotella multiformis DSM 16608]
gi|324989044|gb|EGC20997.1| helicase [Prevotella multiformis DSM 16608]
Length = 654
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 216/445 (48%), Gaps = 52/445 (11%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
++ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+GNP R
Sbjct: 212 VVHGPPGTGKTTTLVEAINETLMRESQVLVCAQSNMAVDWISEKLIDRGINVLRIGNPTR 271
Query: 315 ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAA-GIRQLLKQLGKT 373
++ K LG + K + ++ + S +RK +R+ + + Q + +L
Sbjct: 272 VN----DKMLGFTYERKFEAH-PDYPQLWS-IRKAIRELRNNRKRGSESYHQKMDRLKSR 325
Query: 374 LKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------------VGK 415
+ E + A+VV +T GA ++ ++ T +
Sbjct: 326 ATELEIRIHTSLFGEARVVASTLAGAGSRVMEGQKFTTLFIDEAAQALEAACWIAIRRAS 385
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
R ILAGD CQL P + S AL GG+G +L+ER V+ T L QYRMN+ I ++S
Sbjct: 386 RVILAGDHCQLPPTVKSIAALRGGLGKTLMERIVENKREVV-TLLKVQYRMNEDIMRFSS 444
Query: 476 KEMYGGSLISSSTVASH--LLVDTPFVKPTWI--------TQCPLLLLDTRLPYGSLSLG 525
YGG + ++ + L D P V WI + L +++ P+
Sbjct: 445 DWFYGGQVEAAPQIKYRGILDYDNPMV---WIDTSDEAVTSAYGLAADESKTPFPLSGKD 501
Query: 526 CEEHLDLAGTGSFY---NEGEAEIVVHHVFSLICAGVSPSA------IAVQSPYVAQVQH 576
E+ GS + N+GEAE+ + + + + SPY AQVQ+
Sbjct: 502 QEDAFHEQFVGSSFGRINKGEAELTLKTLKDYFTKIGRQRVLDERIDVGIISPYRAQVQY 561
Query: 577 LR----ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR +R P + V V T+D FQG+E D ++IS+VRSN G +GFL D RRMNVAI
Sbjct: 562 LRSLIKKREFFKPYRSLVSVNTVDGFQGQERDVILISLVRSNEEGQIGFLRDLRRMNVAI 621
Query: 633 TRACKHVAVVCDSSTICHNTFLARL 657
TRA + ++ ++ T+ + F +L
Sbjct: 622 TRARMKLIILGNARTMTRHAFYKKL 646
>gi|195356067|ref|XP_002044503.1| GM13241 [Drosophila sechellia]
gi|194131805|gb|EDW53739.1| GM13241 [Drosophila sechellia]
Length = 1180
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 216/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+ G VLV AP+N AVD
Sbjct: 452 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 510 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRNMETNSELKKL 558
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ + ++L +A V+ T GA D + R+
Sbjct: 559 QQLKDET-----GELSSADEKRYRSLKRASENQLLEAADVICCTCVGAGDGRLSRVKFTS 613
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 614 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 672
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 673 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 727
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AG+ P I + +PY
Sbjct: 728 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY 776
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 777 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 836
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 837 RRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYK 873
>gi|260593445|ref|ZP_05858903.1| putative helicase [Prevotella veroralis F0319]
gi|260534561|gb|EEX17178.1| putative helicase [Prevotella veroralis F0319]
Length = 646
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/462 (31%), Positives = 224/462 (48%), Gaps = 52/462 (11%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
+ +Q+KA+ L K + I+ GPPGTGKT + E I + + +VLV A +N AVD +
Sbjct: 197 NPTQEKAVNEVLWAK-DVAIVHGPPGTGKTTTMVEAINETLMRESQVLVCAQSNMAVDWI 255
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
EKL D G+N++R+GNP R++ K LG + K + ++ + S +RK +R+
Sbjct: 256 SEKLVDRGINVLRIGNPTRVN----DKMLGFTYERKFEAH-PDYPQLWS-IRKAIRELRN 309
Query: 356 DDSLAA-GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL 412
++ Q +++L + E E+ A+V+ +T GA ++ ++ T +
Sbjct: 310 HRKRSSENYHQKMERLKSRATELEIRINSELFGEARVIASTLVGANSRVMEGQKFTTLFI 369
Query: 413 ----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
R I AGD CQL P + S AL G+G +L+ER ++ +
Sbjct: 370 DEAAQALEAACWIPIRRASRVIFAGDHCQLPPTVKSLAALHAGLGKTLMERVVE-NKPEV 428
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLD 514
T L QYRMN+ I ++S YGG + S+ + L D P V WI D
Sbjct: 429 VTLLKVQYRMNEEIMRFSSNWFYGGQVESAPQIKYRGILDYDNPMV---WIDTS-----D 480
Query: 515 TRLPYGSLSLGCEEH--LDLAGTGSFY---NEGEAEIVVHHVFSLICAGVSPSA------ 563
+ L S E+ G + N+GEAE+ + + S
Sbjct: 481 SSLENQSEGGQNEDKSIFKEQFVGESFGRINKGEAELTLQTLQSYFTKIGKQRILDERID 540
Query: 564 IAVQSPYVAQVQHLR----ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAV 619
+ V SPY AQVQ+LR +R P + + V T+D FQG+E D ++IS+VRSN G +
Sbjct: 541 VGVISPYRAQVQYLRGLIKKREFFKPYRSLISVNTVDGFQGQERDVILISLVRSNDAGQI 600
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
GFL D RRMNVAITRA + ++ + T+ + F +L I
Sbjct: 601 GFLRDLRRMNVAITRARMKLIILGNVQTMTQHPFYKKLWESI 642
>gi|317475492|ref|ZP_07934755.1| hypothetical protein HMPREF1016_01737 [Bacteroides eggerthii
1_2_48FAA]
gi|316908323|gb|EFV30014.1| hypothetical protein HMPREF1016_01737 [Bacteroides eggerthii
1_2_48FAA]
Length = 633
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 159/518 (30%), Positives = 241/518 (46%), Gaps = 97/518 (18%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTF-----------DDSQKKAIALGLNK-- 249
T+F EDV + N LA+ + L G M F + +Q+ A+ NK
Sbjct: 149 TMFEALEDVLRAKGNRLAELRDTLL-GTMKAGFRELYPVRFPWLNSTQETAV----NKVL 203
Query: 250 -KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R
Sbjct: 204 CARDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNMAVDWISEKLVDRGVNVLR 263
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSD---------LRKDLRQCLKDDSL 359
+GNP R V K+ SF +ER+ + +RK+LRQ
Sbjct: 264 IGNPTR-------------VNDKMLSFT--YERRFENHPLYPELWSIRKELRQLGGRARR 308
Query: 360 AA-----GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL 412
+ GIR + +L E + E+ SA V+ +T + L+ R T +
Sbjct: 309 GSYDEREGIRSRMSRLRDRATALEVQINTELFDSAHVIASTLVSSNHRLLNGRHFGTLFI 368
Query: 413 ----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
R +LAGD CQL P I +A GG+ +L+E+ A +
Sbjct: 369 DEAAQALEAACWIAIRKADRVVLAGDHCQLPPTIKCYEAARGGLERTLMEKVAASKPSAV 428
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLD 514
+ L QYRM++ I ++S Y G L ++ + L DTP TWI + D
Sbjct: 429 SL-LKVQYRMHEDIMRFSSNWFYDGELEAAPEIRHRGILDWDTPV---TWIDTSDM---D 481
Query: 515 TRLPYGSLSLGC----EEHLDLAGTGSF-YNEGEAEIVVHHV-FSLICAGVSPSAIAVQS 568
+ + + G E HL L ++ G + I+ + F LI S
Sbjct: 482 FKEEFVGETFGRINKEEAHLLLKELEAYILRIGGSRILEERIDFGLI------------S 529
Query: 569 PYVAQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
PY AQVQ+LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D
Sbjct: 530 PYKAQVQYLRGKIKGSATLRPYRSLITVNTVDGFQGQERDVIFISLVRANEEGQIGFLND 589
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RRMNVAITRA + ++ +++T+ H+ F +LL +++
Sbjct: 590 LRRMNVAITRARMKLVILGEAATLGHHAFYKQLLEYVK 627
>gi|18859757|ref|NP_572767.1| Upf1 [Drosophila melanogaster]
gi|27923995|sp|Q9VYS3.2|RENT1_DROME RecName: Full=Regulator of nonsense transcripts 1 homolog
gi|16769416|gb|AAL28927.1| LD30316p [Drosophila melanogaster]
gi|22832121|gb|AAF48115.2| Upf1 [Drosophila melanogaster]
gi|220960128|gb|ACL92600.1| Upf1-PA [synthetic construct]
Length = 1180
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 215/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+ G VLV AP+N AVD
Sbjct: 452 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 510 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRNMETNSELKKL 558
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ ++L +A V+ T GA D + R+
Sbjct: 559 QQLKDET-----GELSSADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTS 613
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 614 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 672
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 673 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 727
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AG+ P I + +PY
Sbjct: 728 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY 776
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 777 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 836
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 837 RRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYK 873
>gi|150007774|ref|YP_001302517.1| helicase [Parabacteroides distasonis ATCC 8503]
gi|149936198|gb|ABR42895.1| putative helicase [Parabacteroides distasonis ATCC 8503]
Length = 640
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 159/513 (30%), Positives = 248/513 (48%), Gaps = 77/513 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEV----------KLDGIMGKTFDDSQKKAIALGLNKKRP 252
T+F DV + N L+ +V +L I + SQ++A+ L K+
Sbjct: 146 TMFSALSDVMRAKNNQLSHLRDVLLGQEKPGQRELFPIRFPWLNRSQEEAVNKVLGAKQ- 204
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL D G+N++R+GNP
Sbjct: 205 VSIVHGPPGTGKTTTLVEAIYETLHRENQVIVCAQSNTAVDCISEKLVDRGINVLRIGNP 264
Query: 313 ARISPAVASKSLGEIVKS-----KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
RI+ + S + +S +L S +S++RK R+ + D+ IR L
Sbjct: 265 TRINDKMLSFTYERRFESHPDYPELWSIRKAIRDIQSNMRKKSRE--ERDT----IRNRL 318
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------------- 412
+L + E + E+ A+VV T G+A+ ++ R T +
Sbjct: 319 SRLKFRATELEVKIDTELFDEARVVACTLVGSANRVMMNRHFTTLFIDEAAQALEAACWI 378
Query: 413 ---VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
R ILAGD QL P I +A G+G +L+++ A ++ L QYRM++
Sbjct: 379 AISKADRVILAGDHHQLPPTIKCIEAEREGLGRTLMQKIAHTKPETVSL-LKIQYRMHED 437
Query: 470 IASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWI--TQCPLLLLDTRLPYGSLSLG 525
I ++S+ Y L S+ V+ L +DTP V W ++C +TR
Sbjct: 438 IMRFSSQWFYHNELESAPEVSGRGILRLDTPIV---WFDTSECDFTE-NTR--------- 484
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ-------SPYVAQVQHLR 578
EE T S N EAE++V + S I +S + + SPY AQVQ++R
Sbjct: 485 -EE------TMSRVNRQEAELLVEQLRSYI-QKISKERVLEENIDFGLISPYKAQVQYIR 536
Query: 579 ERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+ + P + V T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITR
Sbjct: 537 KLIKQDAFFKPLRRLITVHTVDGFQGQERDVILISLVRANEDGKIGFLNDLRRMNVAITR 596
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
A + ++ D+ST+ + F L +I G++
Sbjct: 597 ARMKLMILGDASTLTRHAFYKELYNYISQRGKI 629
>gi|358055738|dbj|GAA98083.1| hypothetical protein E5Q_04765 [Mixia osmundae IAM 14324]
Length = 1047
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 215/452 (47%), Gaps = 75/452 (16%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIAR--AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
++PL +IQGPPGTGKT I+ + QG+ VLVTAP+N AVD + EK+ GL +V
Sbjct: 472 QKPLSLIQGPPGTGKTVTSASIVYHLATMSQGQ-VLVTAPSNVAVDQLTEKIHTTGLKVV 530
Query: 308 RVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
R+ +R E ++S ++ + +D +L++ ++ L +L
Sbjct: 531 RITAKSR-----------EALESSISHLTLHEQVANNDTHVELQKLIQ---LKTEQGELS 576
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD------------------- 408
+ K + +E+L++A V+ T G DP + ++
Sbjct: 577 SSDERKFKSLTRACEREILTNADVICCTCVGCGDPRLSKIKFRTVLIDEATQATEPECMI 636
Query: 409 --TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
TF + K+ ++ GD QL P I+S+KA G+ SL ER L G +L QYRM
Sbjct: 637 PLTFGV--KQLVMVGDHSQLGPTIMSKKAARAGLTQSLFERLVLL--GNRPIRLQVQYRM 692
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
+ ++ + S Y GSL + T + VD P+ +PT P+ Y +L
Sbjct: 693 HPCLSEFPSNMFYEGSLQNGVTAPERIKKNVDFPWPQPT----TPM--------YFHQNL 740
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL------- 577
G EE + +GT SF N EA V V L +GV P I + +PY Q ++
Sbjct: 741 GQEE-ISSSGT-SFLNRTEAANVEKVVTRLFKSGVMPHQIGIVTPYEGQRAYIANYMLFN 798
Query: 578 ----RERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAIT 633
+E D +EVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+T
Sbjct: 799 GSLKKELYKD------IEVASVDAFQGREKDYILLSCVRSNEHQGIGFLNDPRRLNVALT 852
Query: 634 RACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RA + ++ + + + LL H + G
Sbjct: 853 RAKYGLVILGNPKVLSKHALWHYLLTHYKEKG 884
>gi|301310190|ref|ZP_07216129.1| DNA helicase [Bacteroides sp. 20_3]
gi|300831764|gb|EFK62395.1| DNA helicase [Bacteroides sp. 20_3]
Length = 640
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 159/513 (30%), Positives = 248/513 (48%), Gaps = 77/513 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEV----------KLDGIMGKTFDDSQKKAIALGLNKKRP 252
T+F DV + N L+ +V +L I + SQ++A+ L K+
Sbjct: 146 TMFSALSDVMRAKNNQLSHLRDVLLGQEKPGQRELFPIRFPWLNRSQEEAVNKVLGAKQ- 204
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL D G+N++R+GNP
Sbjct: 205 VSIVHGPPGTGKTTTLVEAIYETLHRENQVIVCAQSNTAVDCISEKLVDRGINVLRIGNP 264
Query: 313 ARISPAVASKSLGEIVKS-----KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
RI+ + S + +S +L S +S++RK R+ + D+ IR L
Sbjct: 265 TRINDKMLSFTYERRFESHPDYPELWSIRKAVRDIQSNMRKKSRE--ERDT----IRNRL 318
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------------- 412
+L + E + E+ A+VV T G+A+ ++ R T +
Sbjct: 319 SRLKFRATELEVKIDTELFDEARVVACTLVGSANRIMMNRHFTTLFIDEAAQALEAACWI 378
Query: 413 ---VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
R ILAGD QL P I +A G+G +L+++ A ++ L QYRM++
Sbjct: 379 AISKADRVILAGDHHQLPPTIKCIEAEREGLGRTLMQKIAHAKPETVSL-LKIQYRMHED 437
Query: 470 IASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWI--TQCPLLLLDTRLPYGSLSLG 525
I ++S+ Y L S+ V+ L +DTP V W ++C +TR
Sbjct: 438 IMRFSSQWFYHNELESAPEVSGRGILRLDTPIV---WFDTSECDFTE-NTR--------- 484
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ-------SPYVAQVQHLR 578
EE T S N EAE++V + S I +S + + SPY AQVQ++R
Sbjct: 485 -EE------TMSRVNRQEAELLVEQLRSYI-QKISKERVLEENIDFGLISPYKAQVQYIR 536
Query: 579 ERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+ + P + V T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITR
Sbjct: 537 KLIKQDAFFKPLRRLITVHTVDGFQGQERDVILISLVRANEDGKIGFLNDLRRMNVAITR 596
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
A + ++ D+ST+ + F L +I G++
Sbjct: 597 ARMKLMILGDASTLTRHAFYKELYNYISQRGKI 629
>gi|262381717|ref|ZP_06074855.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|423336431|ref|ZP_17314178.1| hypothetical protein HMPREF1059_00130 [Parabacteroides distasonis
CL09T03C24]
gi|262296894|gb|EEY84824.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|409240906|gb|EKN33680.1| hypothetical protein HMPREF1059_00130 [Parabacteroides distasonis
CL09T03C24]
Length = 640
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 159/513 (30%), Positives = 248/513 (48%), Gaps = 77/513 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEV----------KLDGIMGKTFDDSQKKAIALGLNKKRP 252
T+F DV + N L+ +V +L I + SQ++A+ L K+
Sbjct: 146 TMFSALSDVMRAKNNQLSHLRDVLLGQEKPGQRELFPIRFPWLNRSQEEAVNKVLGAKQ- 204
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL D G+N++R+GNP
Sbjct: 205 VSIVHGPPGTGKTTTLVEAIYETLHRENQVIVCAQSNTAVDCISEKLVDRGINVLRIGNP 264
Query: 313 ARISPAVASKSLGEIVKS-----KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLL 367
RI+ + S + +S +L S +S++RK R+ + D+ IR L
Sbjct: 265 TRINDKMLSFTYERRFESHPDYPELWSIRKAVRDIQSNMRKKSRE--ERDT----IRNRL 318
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------------- 412
+L + E + E+ A+VV T G+A+ ++ R T +
Sbjct: 319 SRLKFRATELEVKIDTELFDEARVVACTLVGSANRIMMNRHFTTLFIDEAAQALEAACWI 378
Query: 413 ---VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
R ILAGD QL P I +A G+G +L+++ A ++ L QYRM++
Sbjct: 379 AISKADRVILAGDHHQLPPTIKCIEAEREGLGRTLMQKIAHAKPETVSL-LKIQYRMHED 437
Query: 470 IASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWI--TQCPLLLLDTRLPYGSLSLG 525
I ++S+ Y L S+ V+ L +DTP V W ++C +TR
Sbjct: 438 IMRFSSQWFYHNELESAPEVSGRGILRLDTPIV---WFDTSECDFTE-NTR--------- 484
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ-------SPYVAQVQHLR 578
EE T S N EAE++V + S I +S + + SPY AQVQ++R
Sbjct: 485 -EE------TMSRVNRQEAELLVEQLRSYI-QKISKERVLEENIDFGLISPYKAQVQYIR 536
Query: 579 ERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+ + P + V T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITR
Sbjct: 537 KLIKQDAFFKPLRRLITVHTVDGFQGQERDVILISLVRANEDGKIGFLNDLRRMNVAITR 596
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
A + ++ D+ST+ + F L +I G++
Sbjct: 597 ARMKLMILGDASTLTRHAFYKELYNYISQRGKI 629
>gi|288926626|ref|ZP_06420541.1| DNA helicase [Prevotella buccae D17]
gi|288336595|gb|EFC74966.1| DNA helicase [Prevotella buccae D17]
Length = 634
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 214/444 (48%), Gaps = 58/444 (13%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL+D G+N++R+GNP+R
Sbjct: 206 IVHGPPGTGKTTTLVEAINETLMRESQVMVCAQSNMAVDWICEKLTDRGINVLRIGNPSR 265
Query: 315 ISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC-LKDDSLAAGIRQL 366
V K+ SF E FE +RK +R+ + + Q
Sbjct: 266 -------------VNDKMLSFTYERRFESHPDYPQLWAIRKTIRELRSRRRRGSGDYHQK 312
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------------ 412
+++L + E E+ A+V+ +T G+A L+ ++ T +
Sbjct: 313 MERLKSRAAEIEIRINSELFGEARVIASTLVGSAHRLLDGQKYATLFIDEAAQALEAACW 372
Query: 413 ----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
R +LAGD CQL P + S AL G+G +L+ER ++ + T L QYRMN+
Sbjct: 373 IPIRKASRVVLAGDHCQLPPTVKSIAALRAGLGKTLMERIVE-NKPEVVTLLKVQYRMNE 431
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPT-WITQCPLLLLDTRLPYGSLSLGCE 527
I ++S Y G ++S+ + ++D + P W T L G
Sbjct: 432 QIMRFSSDWFYHGEVVSAPQIRHRGILD--YDHPMEWKTNS----LTPSPSSGEEGEAAG 485
Query: 528 EHLDLAGTGSFYNEGEAEI---VVHHVFSLICAGV---SPSAIAVQSPYVAQVQHLRERL 581
E + G N+GEAE+ + F+ I + + SPY AQVQ+LR+ +
Sbjct: 486 ESFVSSSFGRI-NKGEAELTLGTLEEYFTKIGKRRILDERIDVGIISPYRAQVQYLRQLI 544
Query: 582 DDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
P + V T+D FQG+E D ++IS+VRSN G +GFL D RRMNVAITRA
Sbjct: 545 RKREFFKPYRQCITVNTVDGFQGQERDIILISLVRSNDEGQIGFLRDLRRMNVAITRARM 604
Query: 638 HVAVVCDSSTICHNTFLARLLRHI 661
+ ++ D ST+ + F +L +I
Sbjct: 605 KLIILGDVSTLGRHPFYKKLWEYI 628
>gi|170572722|ref|XP_001892210.1| Regulator of nonsense transcripts 1 homolog [Brugia malayi]
gi|158602607|gb|EDP38975.1| Regulator of nonsense transcripts 1 homolog, putative [Brugia
malayi]
Length = 501
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 134/474 (28%), Positives = 228/474 (48%), Gaps = 54/474 (11%)
Query: 223 SEVKLDGIMGKT--FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE 280
+ + LD + K+ ++ Q++A+ LNK RP++ I GPPGTGKT ++ EI+ AV + +
Sbjct: 39 NNIFLDEVSKKSVRLNEDQRRAVFAALNKSRPIVTIHGPPGTGKTAVIAEIVLEAVSRKQ 98
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
+VL+ AP+N AV+N+V++L D+ I +G + +S A + V + A F+
Sbjct: 99 KVLICAPSNIAVNNIVDRLKDLA-GICALGFNSELSLAAELEQHDRFVDIQCA-----FK 152
Query: 341 RKKSDLRKDL--RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTG 398
+ S + C + + ++L L +T ++SS QV++ T T
Sbjct: 153 KLDSGESNGIYGNNCDEHKKVWHDASKMLWHLKET-----------IVSSKQVIVCTLTN 201
Query: 399 AADPLIRR------LDTFD--------------LVGKRCILAGDQCQLAPVILSRKAL-E 437
+ +R L D L+ R ++ GD QL PV+ + + L
Sbjct: 202 NSLRFLREHGFQPTLTVIDEAAQALECVAWYSLLLSPRAVIVGDPWQLPPVLKTSRLLGM 261
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT 497
I SL++ + + LT QYRMN I W S Y L + +A LL D
Sbjct: 262 DDISNSLMDTLSKRFGEANSFMLTEQYRMNRKIMEWPSSFFYQSQLRPNEHIADQLLSDI 321
Query: 498 PFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA 557
V + P++ +DT + E + S+ N EA++++ +V +L
Sbjct: 322 SKVPKGSLFDEPMIFIDTSHDKSA------ESSEKLYRHSYANALEAKLIIKYVTALSMF 375
Query: 558 GVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
GV I + +PYVAQV L++ L V ++D+FQG+E + +++S+VR+N G
Sbjct: 376 GVQEKDIGIIAPYVAQVDMLKKSL------KTSRVNSVDAFQGQECEVIVMSLVRNNGDG 429
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
+GFL D RR NVA+TRA + +V + + + L L+ +++ GR+ E
Sbjct: 430 RIGFLKDERRFNVAVTRARRQFVLVGSAIMMKYAKHLRSLIEYMQRHGRIIKQE 483
>gi|308505126|ref|XP_003114746.1| CRE-SMG-2 protein [Caenorhabditis remanei]
gi|308258928|gb|EFP02881.1| CRE-SMG-2 protein [Caenorhabditis remanei]
Length = 1067
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 140/460 (30%), Positives = 228/460 (49%), Gaps = 55/460 (11%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ +A+ L RPL +IQGPPGTGKT + I+ VQ+ + VLV +P+N AVD
Sbjct: 440 LNSSQMQAVKQVLT--RPLSLIQGPPGTGKTVVSATIVYHLVQKTDGNVLVCSPSNIAVD 497
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ EK+ GL +VR+ +R L ++ ++ +K L++++ +
Sbjct: 498 HLAEKIHKTGLKVVRLCARSREHTETTVPYL--TLQHQMKVMGGPELQKLIQLKEEIGEL 555
Query: 354 -LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
KDDS ++++ + E+L++A V+ T + AAD + ++ T +
Sbjct: 556 ESKDDSRFLQLKRVKEH--------------ELLAAADVICCTCSSAADARLTKIRTRTV 601
Query: 413 V-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
+ ++ +L GD CQL PV++ +KA G+ SL ER L
Sbjct: 602 LIDESTQATEPEILVSIVRGVRQLVLVGDHCQLGPVVICKKAAMAGLSQSLFERLVLL-- 659
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
G+ +L QYRM+ ++ + S Y GSL + T S L + +++P + + +
Sbjct: 660 GIRPFRLQVQYRMHPVLSEFPSNAFYDGSLQNGVT-ESELELFFVYLRPIFADDRQMKGV 718
Query: 514 DTRLP---YGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
D P + C +L+ +G SF N EA V V LI GV P+ I V +P
Sbjct: 719 DWHWPTPNKPAFFWHCSGAEELSSSGTSFLNRTEAANVEKLVSKLIKGGVQPNQIGVITP 778
Query: 570 YVAQ------VQHLRERLDD-LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
Y Q H + L+ L E+ VE+A++D+FQGRE D +I++ VRSN + +GFL
Sbjct: 779 YEGQRSFIVNYMHTQGTLNSKLYES--VEIASVDAFQGREKDYIIVTCVRSNDILGIGFL 836
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D RR+NVAITRA + VV ++ + + L+ H +
Sbjct: 837 NDPRRLNVAITRAKYGIVVVGNAKVLARHELWYELINHYK 876
>gi|409045768|gb|EKM55248.1| hypothetical protein PHACADRAFT_28301 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1067
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 209/436 (47%), Gaps = 57/436 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT + + +VLV AP+N AVD + EK+ GL +VR
Sbjct: 457 QKPLSLIQGPPGTGKTVTSASTVYHLAKMNPGQVLVCAPSNVAVDQLTEKIHATGLKVVR 516
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ +R E + S +A + + +L++ ++ ++
Sbjct: 517 LTAKSR-----------EALDSSVAFLTLHQQVANNTTHVELQKLIQ-------LKNEQG 558
Query: 369 QLGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+L ++K K + KE+LS+A V+ T GA DP + +L ++
Sbjct: 559 ELSSNDERKYKALIRQCEKEILSAADVICCTCVGAGDPRLSKLKFRTVLIDEATQAAEPG 618
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASW 473
K+ +L GD QL PVI+++KA G+ SL ER L G +L QYRM+ ++ +
Sbjct: 619 CKQVVLVGDHQQLGPVIMNKKAARAGLTQSLFERLVVL--GNRPIRLQVQYRMHPCLSEF 676
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S Y G+L + T L + F P + P+ +LG EE + +
Sbjct: 677 PSNMFYEGTLQNGVTAPERLRKNVDFPWP--VPDTPMFFYQ--------NLGQEE-ISSS 725
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-------DLPE 586
GT SF N EA V V +GV P+ I V +PY Q ++ + DL +
Sbjct: 726 GT-SFLNRTEASNVEKIVTKFFKSGVVPNQIGVVTPYEGQRSYIVNYMQFNGTLKKDLYK 784
Query: 587 AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
+EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA V ++ +
Sbjct: 785 E--IEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGVVILGNPK 842
Query: 647 TICHNTFLARLLRHIR 662
+ + LL H +
Sbjct: 843 VLSKHPLWHYLLTHYK 858
>gi|194889307|ref|XP_001977057.1| GG18821 [Drosophila erecta]
gi|190648706|gb|EDV45984.1| GG18821 [Drosophila erecta]
Length = 1186
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 215/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+ G VLV AP+N AVD
Sbjct: 452 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 510 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRNMETNSELKKL 558
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ ++L +A V+ T GA D + R+
Sbjct: 559 QQLKDET-----GELSSADEKRYRILKRAAENQLLEAADVICCTCVGAGDGRLSRIKFTS 613
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 614 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 672
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 673 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 727
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AG+ P I + +PY
Sbjct: 728 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY 776
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 777 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 836
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 837 RRLNVALTRAKYGIIIVGNPKVLAKQQLWNHLLNFYK 873
>gi|311746247|ref|ZP_07720032.1| DNA-binding protein SMUBP-2 [Algoriphagus sp. PR1]
gi|126576477|gb|EAZ80755.1| DNA-binding protein SMUBP-2 [Algoriphagus sp. PR1]
Length = 642
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 153/482 (31%), Positives = 227/482 (47%), Gaps = 97/482 (20%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ +A L N K + ++ GPPGTGKT L E I +AV G+ +LV+AP+NAAVD +VE
Sbjct: 186 SQNQACQLISNAK-DVAVVHGPPGTGKTTTLIEAIEQAVTAGQSILVSAPSNAAVDLLVE 244
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G+ +R+G+PAR V K L + + +K A + + KK LRK+ Q LK
Sbjct: 245 KLIDQGIETLRLGHPAR----VEEKILNQTLDAKTAFHSSYRDLKK--LRKETDQYLK-- 296
Query: 358 SLAAGI-----------RQLL----KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
LA R+L+ +L + K E+ ++ +V +T GA+
Sbjct: 297 -LAKQYKRKFGPEERAQRKLMYAEVSRLREASKSLEEYIQYDIFQKTKVFASTLVGASSY 355
Query: 403 LIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVS 443
++ ++ FD+V K+ + AGD CQL P I S +A + G+
Sbjct: 356 SLKGME-FDVVFIDEAAQGLEAATWIPILKAKKVVFAGDHCQLPPTIKSYQAAQEGL--- 411
Query: 444 LLERAATLHEGVLATK------LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT 497
A TL E V+A K L QYRM + I +++++ Y G L ++ H
Sbjct: 412 ----AETLFEKVIARKSQASQMLQVQYRMPEVIMGFSNEQFYKGELQAAENTKLHTFPGE 467
Query: 498 PFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA-----------GTGSFYNEGEAEI 546
+ WI D + SLS E A G G+F EG
Sbjct: 468 D-QQLEWIDTAGAGYNDQK-EAESLSTCNPEEAAFACRYLNEMIVRIGIGNFKQEG---- 521
Query: 547 VVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE-------VATIDSFQ 599
I + +PY AQV+ LR + + E ++ + T+D FQ
Sbjct: 522 ---------------WTIGLIAPYGAQVRLLRSLIFEGFEYPNLKAFSDLITIDTVDGFQ 566
Query: 600 GREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
G+E D ++IS+ RSN G +GFL D RRMNVA+TRA + + +V DSST+ N F +LL+
Sbjct: 567 GQERDLMLISLTRSNEKGEIGFLADERRMNVALTRAKRKLVLVGDSSTLALNPFFDQLLQ 626
Query: 660 HI 661
+
Sbjct: 627 YF 628
>gi|288803446|ref|ZP_06408878.1| DNA helicase [Prevotella melaninogenica D18]
gi|288334056|gb|EFC72499.1| DNA helicase [Prevotella melaninogenica D18]
Length = 638
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 141/466 (30%), Positives = 222/466 (47%), Gaps = 53/466 (11%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q+KA+ L K + ++ GPPGTGKT L E I + + +V+V A +N AVD + E
Sbjct: 181 TQEKAVNEVLWAK-DVAVVHGPPGTGKTTTLVEAINETLMRESQVMVCAQSNMAVDWICE 239
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G+N++R+GNP R++ K LG + K + ++ + S +RK +R+ +
Sbjct: 240 KLVDRGINVLRIGNPTRVN----DKMLGFTYERKFEAH-PDYPQLWS-IRKAIRELRNNR 293
Query: 358 SLAA-GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--- 413
+ Q + +L + E + A+VV +T GA ++ + L
Sbjct: 294 KKGSESYHQKMDRLKSRATELEIRINAALFGEARVVASTLVGANSRIMEGQNFTTLFIDE 353
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R I AGD CQL P + S AL GG+G +L+ER ++ + T
Sbjct: 354 AAQALEAACWIAIRRASRVIFAGDHCQLPPTVKSIAALRGGLGKTLMERIVE-NKPEVVT 412
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTR 516
L QYRMN+ I ++S YGG + ++ + L D P V WI ++ +
Sbjct: 413 LLKVQYRMNEEIMRFSSDWFYGGQVETAPQIKYRGILDYDNPMV---WIDTSDEAVVASY 469
Query: 517 LPYGSLSLGCEEHLDLAGTGSFY-----------NEGEAEIVVHHVFSLICAGVSPSA-- 563
S + LD +F+ N+GEAE+ + +
Sbjct: 470 DLTESEANSAPSQLDNDKENAFHEQFVGSSFGRINKGEAELTLKTLVDYFTKIGKQRVLD 529
Query: 564 ----IAVQSPYVAQVQHLR----ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
+ V SPY AQVQ+LR +R P + + V T+D FQG+E D ++IS+VRSN
Sbjct: 530 ERIDVGVISPYRAQVQYLRSLIKKRAFFKPYRSLISVNTVDGFQGQERDVILISLVRSND 589
Query: 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
G +GFL D RRMNVAITRA + ++ + T+ + F +L + +
Sbjct: 590 DGQIGFLRDLRRMNVAITRARMKLIILGNVQTMTKHEFYKKLWKSL 635
>gi|146411955|ref|XP_001481949.1| hypothetical protein PGUG_05712 [Meyerozyma guilliermondii ATCC
6260]
Length = 949
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 145/479 (30%), Positives = 219/479 (45%), Gaps = 84/479 (17%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR------------------AV 276
++SQ+ A+ L +RPL +IQGPPGTGKT II
Sbjct: 387 LNESQENAVRTVL--QRPLSLIQGPPGTGKTFTSATIIYHLRNMINKKPSGKKSSKSKKK 444
Query: 277 QQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV 336
Q E++LV AP+N AVD++ EK++++G+ ++R+ +R S V
Sbjct: 445 QTAEKILVCAPSNVAVDHLAEKIANLGVKVMRLTAKSR---------------EDAESLV 489
Query: 337 AEFERKKSDLRKDLR-QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT 395
+ ++ + R Q L+D A G +LL + K ++ K V+ +V+ +T
Sbjct: 490 SHLSLHNLIVQTNKRLQKLQDKKNAEG--ELLAKEAVEFHKLTRKAEKSVMEDCEVICST 547
Query: 396 NTGAADPLIRRLDT--FDLV--------------------GKRCILAGDQCQLAPVILSR 433
GA D RLD+ F V K+ IL GD QL PVIL +
Sbjct: 548 CVGAGD---HRLDSMVFRAVLIDESTQASEPEIMIPIVKGAKQVILVGDHQQLGPVILHK 604
Query: 434 KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
KA + G+ SL ER L G + +L QYRM+ ++ + S Y GSL + + S
Sbjct: 605 KAGDAGLKQSLFERLVVL--GHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVSSESRT 662
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFS 553
+ F P + P++ YG E + +G S+ N EA V +
Sbjct: 663 FKNETFPWP--VLDFPMMFWAN---YG------REEISASGY-SYLNRVEAMNVEKIITR 710
Query: 554 LICAGVSPSAIAVQSPYVAQVQHLRERL-------DDLPEAAGVEVATIDSFQGREADAV 606
L GV I V +PY Q ++ + + D + + VEVA++D+FQGRE D +
Sbjct: 711 LFKQGVKAEQIGVVTPYEGQRAYILQHMLLTGSLVDKREQYSEVEVASVDAFQGREKDYI 770
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
I+S VR+N +GFL DSRR+NVA+TRA + +V + + N LL H R G
Sbjct: 771 ILSCVRANETHGIGFLSDSRRLNVALTRAKYGLVIVGNPRCLSKNKLWNHLLIHFREKG 829
>gi|50303751|ref|XP_451821.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640953|emb|CAH02214.1| KLLA0B06435p [Kluyveromyces lactis]
Length = 969
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 148/459 (32%), Positives = 217/459 (47%), Gaps = 63/459 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + +RVLV AP+N AVD
Sbjct: 407 LNQSQSNAVKHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKQRVLVCAPSNVAVD 464
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ KL +GL +VR+ +R S+ E+ L S AE + KK K+
Sbjct: 465 HLAAKLHSMGLKVVRLTAKSRED---VESSVSELALHNLVSRSAEGKLKKLLNLKEKTGE 521
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-TFDL 412
L ++ L +K + T+ + A V+ T GA D +RLD F
Sbjct: 522 LSSSDTTKFVK---------LVRKSEATI---IQKADVICCTCVGAGD---KRLDYKFRT 566
Query: 413 V--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
V K+ +L GD QL PVIL RKA + G+ SL ER +L
Sbjct: 567 VLIDESTQASEPECLIPIVKGAKQVVLVGDHQQLGPVILDRKAGDAGLKQSLFERLISL- 625
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
G + +L QYRMN ++ + S Y GSL + T+ + + F P I P++
Sbjct: 626 -GHIPIRLEVQYRMNPQLSEFPSNMFYEGSLQNGVTIEQRTIARSTFPWP--IHTIPMMF 682
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+ G EE ++G G S+ N EA + L GV P I V +PY
Sbjct: 683 W--------ANYGREE---ISGNGTSYLNRIEAMNCEKIITRLFKDGVKPEQIGVITPYE 731
Query: 572 AQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
Q ++ + + + GVEVA++D+FQGRE D +I+S VR+N +GFL D R
Sbjct: 732 GQRAYVVQYMQMNGSMEKSLYMGVEVASVDAFQGREKDYIILSCVRANERNTIGFLSDPR 791
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
R+NVA+TRA + ++ + + N+ + LL H R G
Sbjct: 792 RLNVALTRAKYGLIILGNPRALSRNSLWSHLLLHFREKG 830
>gi|50551471|ref|XP_503209.1| YALI0D23881p [Yarrowia lipolytica]
gi|49649077|emb|CAG81409.1| YALI0D23881p [Yarrowia lipolytica CLIB122]
Length = 964
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 221/449 (49%), Gaps = 68/449 (15%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAV-------QQGERVLVTAPTNAAVDNMVEKLSDV 302
+RP +IQGPPGTGKT + II ++G ++LV AP+N AVD + E+++
Sbjct: 429 RRPFSLIQGPPGTGKTVVSTTIIYHLANIRRQNPEKGSKILVCAPSNVAVDQLAERIAST 488
Query: 303 GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER--KKSDLRKDLRQCLKDDSLA 360
G++++R+ +R S + + + L ++ L F R K +L+ +L + D
Sbjct: 489 GIDVLRLTARSRESMSSSVEHL--TIQHALRHGDHGFTRLQKLFELKDELGEFSAADE-- 544
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------- 413
K K EK+ + ++ A+V+ T + A + ++ L TF V
Sbjct: 545 -----------KEFAKLEKKASEAIIRKAEVICCTCSTAGNFKLQNL-TFSAVLIDEVTQ 592
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
K+ + GD QL PVIL+ KA G+ SL ER + G + +L
Sbjct: 593 ASEPECLIPLVHGCKQVVFVGDHQQLGPVILNSKAANAGLNKSLFERLILI--GHVPIRL 650
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLP 518
QYRM+ +++ + S Y GSL + T AS +L VD P+ +P Q P+L
Sbjct: 651 MVQYRMHPSLSEFPSNMFYEGSLQNGVTTASRVLKYVDFPWPQP----QHPMLFWS---- 702
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
+LG EE + +GT SF N EA V L GV+P I V +PY Q ++
Sbjct: 703 ----NLGQEE-ISASGT-SFLNRTEAANCERIVTRLFKCGVAPDQIGVVTPYEGQRAYVT 756
Query: 579 ERL---DDLPEA--AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAIT 633
+ + + EA GVEV ++D+FQGRE D +I++ VRS+ G +GFL D RR+NVA+T
Sbjct: 757 QYMVSSGSVDEAMYKGVEVQSVDAFQGREKDFIILTCVRSSKTGGIGFLSDPRRLNVALT 816
Query: 634 RACKHVAVVCDSSTICHNTFLARLLRHIR 662
RA + ++ + + + L+ + R
Sbjct: 817 RAKYGLIILGNPHVLARHPLWLHLITYFR 845
>gi|224138824|ref|XP_002326699.1| predicted protein [Populus trichocarpa]
gi|222834021|gb|EEE72498.1| predicted protein [Populus trichocarpa]
Length = 1256
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 145/453 (32%), Positives = 211/453 (46%), Gaps = 90/453 (19%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
++P+ +IQGPPGTGKT + + A+ VLV AP+N AVD + EK+S GL +VR+
Sbjct: 495 QKPISLIQGPPGTGKT-----VTSAAI-----VLVCAPSNVAVDQLAEKISATGLKVVRL 544
Query: 310 GNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAGI 363
+R E V S + ++ +KS+L K Q LKD+
Sbjct: 545 CAKSR-----------EAVSSPVEHLTLHYQVRHLDTSEKSELHK--LQQLKDEQ----- 586
Query: 364 RQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD------------ 411
+L K K ++ T +E+ SA V+ T GA DP RL F
Sbjct: 587 GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDP---RLANFRFRQVLIDESTQA 643
Query: 412 ----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLT 461
L K+ + GD CQL PVI+ +KA G+ SL ER L GV +L
Sbjct: 644 TEPECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GVKPIRLQ 701
Query: 462 TQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGS 521
QYRM+ +++ + S Y G+L + TV F P + P+
Sbjct: 702 VQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWP--VPNRPMFFY-------- 751
Query: 522 LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPS--AIAVQSPYVAQVQH--- 576
+ +G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 752 VQMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQACIGVITPYEGQRAYIVN 809
Query: 577 -------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+N
Sbjct: 810 YMSRNGALRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLN 864
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
VA+TRA + ++ + + LL H +
Sbjct: 865 VALTRARYGIVILGNPKVLSKQPLWNSLLTHYK 897
>gi|294675290|ref|YP_003575906.1| helicase [Prevotella ruminicola 23]
gi|294473767|gb|ADE83156.1| putative helicase [Prevotella ruminicola 23]
Length = 539
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 216/453 (47%), Gaps = 66/453 (14%)
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+ + + I+ GPPGTGKT L E I + + +VLV A +N AVD + E L D G+N++R
Sbjct: 110 RAKDVAIVHGPPGTGKTTTLVEAIYETLMRESQVLVCAQSNMAVDWISEILVDRGVNVLR 169
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQCLKDDSLA- 360
+GNP R V K+ SF E FE LRK +R+ +
Sbjct: 170 IGNPTR-------------VNDKMLSFTYERRFEAHPDYEMLWALRKAIREVRANRKRGD 216
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTF--DLVGK- 415
Q +++L + + E ++ S A+V+ T G+A+ ++ ++ T D +
Sbjct: 217 QKFHQKVERLKERATELELRIKNDLFSEARVIACTLVGSANKVLDGQKFGTLFIDEAAQA 276
Query: 416 -------------RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R ILAGD CQL P + +AL+ G+G +L+ER ++ + T L
Sbjct: 277 LEAACWIPMRRVSRVILAGDHCQLPPTVKCYEALKAGLGKTLMERIVE-NKPEVVTLLKM 335
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR------ 516
QYRMN+ I ++S Y + S+ V ++D V TWI +
Sbjct: 336 QYRMNEEIMRFSSDWFYNNQVESAPDVKYRSILDLD-VPMTWIDTSQFDFPEESGITFKE 394
Query: 517 ----LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
+G ++ E LA F G+ I+ + + V SPY A
Sbjct: 395 EFVGESFGRINKAEAELTMLALQQYFEKIGKERIIKERI-----------DVGVISPYRA 443
Query: 573 QVQHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
QVQ+LR++L P + + + T+D FQG+E D ++IS+VR+N G +GFL D RRM
Sbjct: 444 QVQYLRQQLKKREFFKPFKSLISINTVDGFQGQERDIIMISLVRANDEGQIGFLRDLRRM 503
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
NVAITRA + ++ D+ST+ + F +L +I
Sbjct: 504 NVAITRARMKLIILGDASTLTRHPFYKKLYDYI 536
>gi|384486429|gb|EIE78609.1| hypothetical protein RO3G_03313 [Rhizopus delemar RA 99-880]
Length = 1038
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/447 (30%), Positives = 214/447 (47%), Gaps = 65/447 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT I+ + +VLV AP+N AVD + EK+ GL +VR
Sbjct: 455 QKPLSLIQGPPGTGKTVTSASIVYHLAKMNPGQVLVCAPSNVAVDQLAEKIHQTGLKVVR 514
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC--LKDDS--LAAGIR 364
V +R E + S ++ + + +D +L++ LK D L+A
Sbjct: 515 VTAKSR-----------EELDSPVSFLTLHEQVQNNDTNVELQKLIHLKRDQGELSAADE 563
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD---------------- 408
+ L + +K E+L++A V+ T+ GA D I L
Sbjct: 564 RKYNALKRACEK-------EILANADVICCTSVGAGDSRIANLRFRTVLIDEATQASEPE 616
Query: 409 ---TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
L K+ +L GD QL P+I+++KA G+ SL ER L G+ +L QYR
Sbjct: 617 CMIPLVLGCKQAVLVGDHQQLGPIIMNKKAARAGLCQSLFERLVIL--GIRPIRLQVQYR 674
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ ++ + S Y G+L + T + D F P + + P++ +LG
Sbjct: 675 MHPCLSEFPSNMFYEGTLQNGITTQERIRKDIDFPWP--VLETPMMFY--------ANLG 724
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
EE + +GT S+ N EA V + +GV PS I V +PY Q ++ + +
Sbjct: 725 NEE-ISTSGT-SYLNRTEASNCEKIVTRFMKSGVMPSQIGVVTPYEGQRSYIVQYMQFNG 782
Query: 583 ----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
DL + +EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA
Sbjct: 783 SLRKDLYKE--IEVASVDAFQGREKDYIILSCVRSNEHQGIGFLSDPRRLNVALTRAKYG 840
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFG 665
V ++ + + + LL H + G
Sbjct: 841 VVILGNPKILSRHPLWHHLLVHYKEKG 867
>gi|325860214|ref|ZP_08173339.1| hypothetical protein HMPREF9303_0593 [Prevotella denticola CRIS
18C-A]
gi|325482301|gb|EGC85309.1| hypothetical protein HMPREF9303_0593 [Prevotella denticola CRIS
18C-A]
Length = 639
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 147/465 (31%), Positives = 225/465 (48%), Gaps = 59/465 (12%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q++A+ G+ + + +I GPPGTGKT L E I + + +VLV A +N AVD + E
Sbjct: 181 AQERAVN-GVLWAKDVAVIHGPPGTGKTTTLVEAINETLMRESQVLVCAQSNMAVDWISE 239
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G+N++R+GNP R++ K LG + K + ++ + S +RK +R+ +
Sbjct: 240 KLIDRGINVLRIGNPTRVN----DKMLGFTYERKFEAH-PDYPQLWS-IRKAIRELRNNR 293
Query: 358 SLAA-GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-- 412
+ Q + +L + E + A+VV +T GA ++ ++ T +
Sbjct: 294 KRGSESYHQKMDRLKSRATELEIRIHTSLFGEARVVASTLVGAGSRVMEGQKFTTLFIDE 353
Query: 413 --------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R ILAGD CQL P + S AL GG+G +L+ER V+ T
Sbjct: 354 AAQALEAACWIAIRRASRVILAGDHCQLPPTVKSIAALRGGLGKTLMERIVENKPEVV-T 412
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLL--- 513
L QYRMN+ I ++S YGG + ++ + L D P V WI +
Sbjct: 413 LLKVQYRMNEEIMRFSSDWFYGGQVEAAPQIKYRGILDYDNPMV---WIDTSDDTMTAAS 469
Query: 514 --------DTRLPYGSLSLGCEEHLDLAGTGSFY---NEGEAEIVVHHV---FSLICAGV 559
T +P G G E GS + N+GEAE+ + + F+ I
Sbjct: 470 GSTASEGNQTSVPSGK---GKEASFHEQFVGSSFGRINKGEAELTLKTLKDYFTKIGRQR 526
Query: 560 ---SPSAIAVQSPYVAQVQHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVR 612
+ + SPY AQVQ+LR + P + V V T+D FQG+E D ++IS+VR
Sbjct: 527 VLDEQIDVGIISPYRAQVQYLRSLIKKREFFKPYRSLVSVNTVDGFQGQERDVILISLVR 586
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
SN G +GFL D RRMNVAITRA + ++ + T+ + F +L
Sbjct: 587 SNEEGQIGFLRDLRRMNVAITRARMKLIILGNVRTMTRHPFYKKL 631
>gi|390945185|ref|YP_006408946.1| type III restriction enzyme, res subunit [Belliella baltica DSM
15883]
gi|390418613|gb|AFL86191.1| Type III restriction enzyme, res subunit [Belliella baltica DSM
15883]
Length = 643
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 147/472 (31%), Positives = 234/472 (49%), Gaps = 63/472 (13%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q +A+ L +N+ + II GPPGTGKT L I ++ +VLV AP+NAAVD +VE
Sbjct: 186 AQNQALRL-INQSDDVAIIHGPPGTGKTTTLIAAIQNILKTNRQVLVCAPSNAAVDLLVE 244
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKK-----SDLRKDLRQ 352
KL D G+ +R+G+PAR V K L + + +K+AS + + KK + RK R+
Sbjct: 245 KLVDKGVPTLRIGHPAR----VDDKILAQTLDAKIASHESYKDLKKLRKSVDEYRKLGRK 300
Query: 353 CLKDDSLAAGI--RQLLKQLGKTLKKK---EKETVKEVLSSAQVVLATNTGAADPLIRRL 407
++ + ++LL + G+ + E + +V QV +T G+++ ++ +
Sbjct: 301 YKRNFGHEERVQRKRLLDEAGRMKEDADILENYIMYDVFQMTQVFASTLVGSSNQALKGI 360
Query: 408 DT----FDLVGK--------------RCILAGDQCQLAPVILSRKALEGGIGVSLLERAA 449
D D G+ + ++ GD QL P I S +A + G+ +L E+
Sbjct: 361 DFPYVFIDEAGQGLEAATWIPIMKAEKVVMTGDHLQLPPTIKSYEAAKAGLSETLFEKVI 420
Query: 450 TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCP 509
+ + LT QYRM + I ++SK Y +L ++ H L + V
Sbjct: 421 K-RQPEASKMLTVQYRMPEKIMGFSSKLFYKNNLEAAVNTHIHFLTEEESV--------- 470
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-AGVSPSA----- 563
L +DT GS G EH + + N EA+ + ++ +L+ G+
Sbjct: 471 LEFIDTA---GS---GFSEHQEKESLSTL-NAEEAKFTLKYLENLLKRVGIGKIKTEGWN 523
Query: 564 IAVQSPYVAQVQHLRERLDDLPEAAGV----EVATIDS---FQGREADAVIISMVRSNTL 616
I + SPY AQV+ +E + + E + E+ TIDS FQG+E D + IS+VRSN
Sbjct: 524 IGLISPYRAQVRKFQELIFESYEYPNLRSFSELLTIDSIDGFQGQERDIIFISLVRSNAN 583
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVK 668
G +GFL D+RRMNVA+TRA + + V+ DSST+ N F L ++ G K
Sbjct: 584 GEIGFLSDTRRMNVALTRAKRKLVVIGDSSTLSSNDFYNAFLNYVEEKGEYK 635
>gi|300773891|ref|ZP_07083760.1| DNA helicase [Sphingobacterium spiritivorum ATCC 33861]
gi|300760062|gb|EFK56889.1| DNA helicase [Sphingobacterium spiritivorum ATCC 33861]
Length = 634
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 220/443 (49%), Gaps = 56/443 (12%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
L I+ GPPGTGKT L + I +Q+ +++LVTAP+N AVD + EKL + G+ +VR+GN
Sbjct: 199 LTIVHGPPGTGKTTTLVQGIKALLQKYPDQILVTAPSNTAVDLLTEKLHETGVKVVRIGN 258
Query: 312 PARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAA--GIRQLLKQ 369
P ++S + +L ++S + RKK+D+ +D+ + K + A ++ L Q
Sbjct: 259 PVKVSEQLHELTLDGKLESHPMQKELKTIRKKADVFRDMAKKYKRNFGKAERDQKKALFQ 318
Query: 370 LGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPLIRRLDT----FDLVGK------ 415
K L K+ ++ K++L AQV+ AT G+ I+ D G+
Sbjct: 319 EAKNLMKEAEQIAQYIQKDILDQAQVITATLVGSNHSAIQDRTYAAVFIDEAGQALEPAC 378
Query: 416 --------RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
+ ILAGD QL P I S+ + +L+E+ + + L QYRM+
Sbjct: 379 WIPILKSDKLILAGDHLQLPPTIKSKDSSVRAFHETLMEKLVHAYPSCVCL-LRQQYRMH 437
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLV--DTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
I + S +Y +L + ++A L D F L +DT G
Sbjct: 438 QDIMQYPSAALYNNTLFAEPSIAQQELTPGDNAF-----------LFIDT------AGAG 480
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA-----GVSP-SAIAVQSPYVAQVQHLRE 579
+E + + N EA ++ H+ + A +SP I + SPY QV L+E
Sbjct: 481 FDE---VQEDTAISNIEEANFLIQHLTQYLAAFKKDENMSPFPNIGLISPYRQQVLLLKE 537
Query: 580 --RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
R D++ + +++ TID FQG+E D + IS+ RSN G +GFL + RRMNVA+TRA
Sbjct: 538 LIRNDEMKISVSIQIQTIDGFQGQERDIIYISLTRSNAEGQIGFLNEIRRMNVAMTRARY 597
Query: 638 HVAVVCDSSTICHNTFLARLLRH 660
+ ++ DSSTI + F A ++++
Sbjct: 598 KLIIIGDSSTIGQHPFYAGMIQY 620
>gi|383810355|ref|ZP_09965851.1| AAA domain / AAA domain multi-domain protein [Prevotella sp. oral
taxon 306 str. F0472]
gi|383357100|gb|EID34588.1| AAA domain / AAA domain multi-domain protein [Prevotella sp. oral
taxon 306 str. F0472]
Length = 646
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 145/462 (31%), Positives = 223/462 (48%), Gaps = 52/462 (11%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
+ +Q+KA+ L K + I+ GPPGTGKT + E I + + +VLV A +N AVD +
Sbjct: 197 NPTQEKAVNEVLWAK-DVAIVHGPPGTGKTTTMVEAINETLMRESQVLVCAQSNMAVDWI 255
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
EKL D G+N++R+GNP R++ K LG + K + ++ + S +RK +R+
Sbjct: 256 SEKLVDRGINVLRIGNPTRVN----DKMLGFTYERKFEAH-PDYPQLWS-IRKAIRELRN 309
Query: 356 DDSLAA-GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL 412
++ Q +++L + E E+ A+V+ +T GA ++ ++ T +
Sbjct: 310 HRKRSSENYHQKMERLKSRATELEIRINSELFGEARVIASTLVGANSRVMEGQKFTTLFI 369
Query: 413 ----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
R I AGD CQL P + S AL G+G +L+ER ++ +
Sbjct: 370 DEAAQALEAACWIPIRRASRVIFAGDHCQLPPTVKSLAALHAGLGKTLMERVVE-NKPEV 428
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLD 514
T L QYRMN+ I ++S YGG + S+ + L D P V WI D
Sbjct: 429 VTLLKVQYRMNEEIMRFSSNWFYGGQVESAPQIKYRGILDYDNPMV---WIDTS-----D 480
Query: 515 TRLPYGSLSLGCEEH--LDLAGTGSFY---NEGEAEIVVHHVFSLICAGVSPSA------ 563
+ L S E+ G + N+GEAE+ + + S
Sbjct: 481 SSLENQSEGGQNEDKSIFKEQFVGESFGRINKGEAELTLQTLQSYFTKIGKQRILDERID 540
Query: 564 IAVQSPYVAQVQHLR----ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAV 619
+ V SPY AQVQ LR +R P + + V T+D FQG+E D ++IS+VRSN G +
Sbjct: 541 VGVISPYRAQVQFLRGLIKKREFFKPYRSLISVNTVDGFQGQERDVILISLVRSNDAGQI 600
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
GFL D RRMNVAITRA + ++ + T+ + F +L I
Sbjct: 601 GFLRDLRRMNVAITRARMKLIILGNIQTMTQHPFYKKLWESI 642
>gi|423303764|ref|ZP_17281763.1| hypothetical protein HMPREF1072_00703 [Bacteroides uniformis
CL03T00C23]
gi|423307517|ref|ZP_17285507.1| hypothetical protein HMPREF1073_00257 [Bacteroides uniformis
CL03T12C37]
gi|392687095|gb|EIY80392.1| hypothetical protein HMPREF1072_00703 [Bacteroides uniformis
CL03T00C23]
gi|392690126|gb|EIY83397.1| hypothetical protein HMPREF1073_00257 [Bacteroides uniformis
CL03T12C37]
Length = 610
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 140/457 (30%), Positives = 217/457 (47%), Gaps = 74/457 (16%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+G
Sbjct: 184 RDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWISEKLVDRGVNVLRIG 243
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSD---------LRKDLRQCLKDDSLAA 361
NP R V K+ SF +ER+ + +RK+LR+ +
Sbjct: 244 NPTR-------------VNDKMLSFT--YERRFENHPLYPELWSIRKNLRELGSRARRGS 288
Query: 362 -----GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-- 412
G+R + +L E + E+ A V+ +T + L+ RR T +
Sbjct: 289 YDEREGVRSRMSRLRDRATALEIQINAELFDGAHVIASTLVSSNHRLLNGRRFGTLFIDE 348
Query: 413 --------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R +LAGD CQL P I +A GG+ +L+E+ + V++
Sbjct: 349 AAQALEAACWIAIRKADRVVLAGDHCQLPPTIKCYEAARGGLERTLMEKVVSNKPAVVSL 408
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
L QYRM++ I + S+ Y G L ++ V ++D W T P+ +DT
Sbjct: 409 -LKVQYRMHEEIMKFPSQWFYNGELEAAPEVRYRGILD-------WDT--PIHWIDTS-- 456
Query: 519 YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI--CAG----VSPSAIAVQSPYVA 572
+ +E + T N+ EA++++ + I G I + SPY A
Sbjct: 457 ----EMDFKEEF-VGETFGRINKAEADLLLSELKIYINRIGGNRILEEKIDIGIISPYKA 511
Query: 573 QVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
QVQ+LR ++ P + V T+D FQG+E D + IS+VR+N G +GFL D RRM
Sbjct: 512 QVQYLRSKIKADASLKPYRSLFTVNTVDGFQGQERDVIFISLVRANEEGQIGFLNDLRRM 571
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NVAITRA + ++ ++ T+ H+ F +LL I+ G
Sbjct: 572 NVAITRARMKLVILGEAETLKHHGFYRKLLEFIQNIG 608
>gi|150402752|ref|YP_001330046.1| putative DNA helicase [Methanococcus maripaludis C7]
gi|150033782|gb|ABR65895.1| putative DNA helicase [Methanococcus maripaludis C7]
Length = 633
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 183/697 (26%), Positives = 308/697 (44%), Gaps = 131/697 (18%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+ + L+R ERD E+ F + E+ + EN GRA L +
Sbjct: 7 YVNKFKGLVRKERDHEINFHKAEIKKLGIKRENV------------GRAILNLNGKVLRE 54
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
F G ++V R + T +S GD+V V SRG S + G V +G
Sbjct: 55 FF--------GEYIV--RYGRREKFKKTDISVGDVVLV----SRGNPLQSDLLGTVIEIG 100
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
S H D + + ++ RI + +T++R AL N
Sbjct: 101 -----------SNHVDVSMENVPKWALNDIRIDLYVNDVTFKRMLNALDKFNSTD----N 145
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
I ++ + G K+ + +E++ + + ++ QK+A+ L R L +
Sbjct: 146 RLIDIILGVDGPKQ----------SKKTEIRF---LDHSLNEYQKEAVLEAL-AARDLYL 191
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV-GLNIVRVGNPAR 314
I GPPGTGKT + E+I + + +V+ TA +N AVDN++ +S IVR+G+P+R
Sbjct: 192 IHGPPGTGKTRTISEVILQEALRKNKVIATADSNIAVDNILSNISKYESFKIVRIGHPSR 251
Query: 315 ISPAVASKSLGEIV---------KSKLASFVAEFERKKSDLRKD--LRQCLKDD------ 357
IS + SL + K +E +KS R D R+ + DD
Sbjct: 252 ISKKLMKYSLQNKITEHPNYNTLKKMKMDLQKNYEVRKSFKRPDPKWRRGMTDDDIIIFS 311
Query: 358 SLAAGIRQLLKQ-----------------LGKTLKKKEKETVKEVLSSAQVVLATNTGAA 400
L IR + K+ L + ++K EK+ + +++S++ VV+ATN+ A
Sbjct: 312 KLNKDIRGVPKETIKKMADWVICSENIVKLKENIQKFEKKLIDDIISTSDVVVATNSMAG 371
Query: 401 DPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALEGGIG 441
++ FD ++ ++ I+AGD QL P +LS E +
Sbjct: 372 SEILEDY-KFDVCVIDEGSQSMEPSSLIPIVLSRKLIIAGDHKQLPPTVLSE---ELELK 427
Query: 442 VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
+L ER + + + L QYRMN+ I ++++ Y LI+ +V SH L+D V+
Sbjct: 428 KTLFERLISENPD-FSKILQVQYRMNEKIMEFSNEMFYENKLIAHESVKSHNLLD--IVE 484
Query: 502 PTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSP 561
++ + P +++ +E D S YN EAE V V L +
Sbjct: 485 NVSKEDKDIV---NKKPLQFINVNGQEKQD--SFKSSYNVEEAEKVDEIVSKLRKYEIPV 539
Query: 562 SAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
S I +PY AQV+++ +L+ +EV ++D FQGRE + ++IS VR++ + GF
Sbjct: 540 SVI---TPYDAQVKYISNKLN----TDEIEVKSVDGFQGRENEVIVISFVRTDKM---GF 589
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
L D RR+NVA+TRA + + VV + + + ++ L
Sbjct: 590 LKDLRRLNVAVTRARRKLIVVGSKNLLIKDDAYSKFL 626
>gi|423344038|ref|ZP_17321751.1| hypothetical protein HMPREF1077_03181 [Parabacteroides johnsonii
CL02T12C29]
gi|409213558|gb|EKN06575.1| hypothetical protein HMPREF1077_03181 [Parabacteroides johnsonii
CL02T12C29]
Length = 637
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 151/479 (31%), Positives = 230/479 (48%), Gaps = 89/479 (18%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ++A+ L K + I+ GPPGTGKT L E I + + +V+V A +N AVD + E
Sbjct: 192 SQEEAVNHVLAAK-DVSIVHGPPGTGKTTTLVEAIYETLHRENQVMVCAQSNTAVDWISE 250
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G++++R+GNP R V K+ SF +ER+ + D
Sbjct: 251 KLVDRGIHVLRIGNPTR-------------VNDKMLSFT--YERRF--------ESHPDY 287
Query: 358 SLAAGIRQLLKQLGKTLKKK---EKETVK-------------------EVLSSAQVVLAT 395
+ GIR+ ++++ L++K EKETV+ E+ A+VV T
Sbjct: 288 AELWGIRKAIREIQSNLRRKSHSEKETVRNRLSRLRFRATELEVKIDTELFDEARVVACT 347
Query: 396 NTGAADPLI--RRLDTFDL--------------VGK--RCILAGDQCQLAPVILSRKALE 437
G+A+ ++ R T + +GK R ILAGD QL P I +A
Sbjct: 348 LVGSANRVLTNRNFTTLFIDEAAQALEAACWIAIGKADRVILAGDHHQLPPTIKCIEAAR 407
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLV 495
GG+ +L+++ T + + L TQYRMN++I + S+ Y L S+ V L
Sbjct: 408 GGLDHTLMQKI-TDRKPETVSLLKTQYRMNESIMRFPSRWFYRDELQSAPEVKHRGILEF 466
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNE--GEAEIVVHHV-F 552
DTP V W+ + +L + +E L T Y E G+ ++ + F
Sbjct: 467 DTPVV---WLDTADCHFEEDQLTDSMSRINKDEATLLVSTLQKYIEKIGKERVLDESIDF 523
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLR----ERLDDLPEAAGVEVATIDSFQGREADAVII 608
LI SPY +QVQ++R + P + V T+D FQG+E D ++I
Sbjct: 524 GLI------------SPYKSQVQYIRGLVKRNVFFKPFRRLITVHTVDGFQGQERDVIMI 571
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
S+VR+N G +GFLGD RRMNVAITRA + ++ D+ T+ + F L +IR G+V
Sbjct: 572 SLVRANDKGRIGFLGDLRRMNVAITRARMKLMILGDAPTLTRHAFYKELYEYIRENGQV 630
>gi|383123539|ref|ZP_09944218.1| putative DNA helicase [Bacteroides sp. 1_1_6]
gi|251839647|gb|EES67730.1| putative DNA helicase [Bacteroides sp. 1_1_6]
Length = 648
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 146/454 (32%), Positives = 220/454 (48%), Gaps = 74/454 (16%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 221 RDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 280
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA 360
NP R V K+ SF E FE S +RK +R+ ++ S +
Sbjct: 281 NPTR-------------VNDKMLSFTYERRFENHPSYPELWGIRKSIREMGSRMRRGSYS 327
Query: 361 A--GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL---- 412
G+R + +L + E ++ SA+V+ +T + L+ RR T +
Sbjct: 328 EREGMRSRMSRLRDRATELEILINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAA 387
Query: 413 ------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
R ILAGD CQL P I +A GG+ +L+E+ ++ L
Sbjct: 388 QALEAACWIAIRKADRVILAGDHCQLPPTIKCIEAARGGLDHTLMEKVVQQKPSAVSL-L 446
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLP 518
QYRM++AI + S+ Y G L ++ V + L DTP WI + D
Sbjct: 447 KVQYRMHEAIMRFPSEWFYNGELEAAPEVRNRGILDFDTPM---NWIDTSEM---DFHEE 500
Query: 519 YGSLSLG----CEEHLDLAGTGSFYNE-GEAEIVVHHV-FSLICAGVSPSAIAVQSPYVA 572
+ S G E +L L ++ + G+A I+ + F LI SPY A
Sbjct: 501 FVGESFGRINKQEANLLLQELEAYISRIGKARILDESIDFGLI------------SPYKA 548
Query: 573 QVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
QVQ+LR ++ P + + V T+D FQG+E D V IS+VR+N G +GFL D RRM
Sbjct: 549 QVQYLRSKIRGSSFLRPFRSLITVNTVDGFQGQERDVVFISLVRANEDGQIGFLNDLRRM 608
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
NVAITRA + ++ D++T+ + F +L+++IR
Sbjct: 609 NVAITRARMKLVILGDATTLTKHAFYRKLIQYIR 642
>gi|82915224|ref|XP_729015.1| nonsense mRNA reducing factor 1 [Plasmodium yoelii yoelii 17XNL]
gi|23485801|gb|EAA20580.1| nonsense mRNA reducing factor 1-related [Plasmodium yoelii yoelii]
Length = 1297
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 137/439 (31%), Positives = 218/439 (49%), Gaps = 55/439 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR--AVQQGERVLVTAPTNAAV 292
+ SQ AI LN PL +IQGPPGTGKT ++ + G +VLVTAP+N AV
Sbjct: 666 LNHSQIDAIKKSLNS--PLSLIQGPPGTGKTLTCATLVYHMHKTKMGGKVLVTAPSNVAV 723
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
D + ++ GL +VR+ +R S + + L + KL K+D+ ++L +
Sbjct: 724 DQLSVRIHRTGLKVVRLCARSRESVSSIADYLYLHNQVKLL---------KTDVGEELNK 774
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
L+ L + +L ++ LKK ++L+ A V+ T GA D ++R F+
Sbjct: 775 LLE---LKEEVGELSQKDENRLKKLILHAEYKILTEADVICTTCVGAMDKRLKRF-RFNQ 830
Query: 413 V--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
V K+ +L GD CQL P+I+ +KA G+G SL ER L
Sbjct: 831 VLIDEATQSTEPECLVPIVTGAKQIVLVGDHCQLGPIIVCKKAASSGLGKSLFERLVML- 889
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
G+ +L QYRM+ ++ + S Y G L + T+ F P ++ P+
Sbjct: 890 -GITPFRLEVQYRMHPCLSEFPSYVFYDGCLQNGITLKEREYPLKNFPWPN--SKYPMFF 946
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
++ G EE + +GT S+ N EA+ + V +L+ AG+ + I V +PY
Sbjct: 947 YNSN--------GLEE-MSASGT-SYLNRNEAQNMEVLVRALLNAGLKATQIGVITPYEG 996
Query: 573 Q---VQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
Q + L ++ +EVA++D+FQGRE D +++S VRSN +GFL D RR+N
Sbjct: 997 QRAYITSLFQKNISYQHCLDIEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRRLN 1056
Query: 630 VAITRACKHVAVVCDSSTI 648
VA+TRA K+ ++C ++ +
Sbjct: 1057 VALTRA-KYGLIICGNAKV 1074
>gi|345884981|ref|ZP_08836376.1| hypothetical protein HMPREF0666_02552 [Prevotella sp. C561]
gi|345042227|gb|EGW46333.1| hypothetical protein HMPREF0666_02552 [Prevotella sp. C561]
Length = 656
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 224/463 (48%), Gaps = 55/463 (11%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q+KA+ L K + ++ GPPGTGKT L E I + + +V+V A +N AVD + E
Sbjct: 199 TQEKAVNEVLWAK-DVAVVHGPPGTGKTTTLVEAINETLMRESQVMVCAQSNMAVDWICE 257
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G+N++R+GNP R++ K LG + K + ++ + S +RK +R+ +
Sbjct: 258 KLVDRGINVLRIGNPTRVN----DKMLGFTYERKFEAH-PDYPQLWS-IRKAIRELRNNR 311
Query: 358 SLAA-GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-- 412
+ Q + +L + E E+ A+VV +T GA ++ ++ T +
Sbjct: 312 KKGSESYHQKMDRLKSRATELEIRINAELFGEARVVASTLVGANSRIMEGQKFTTLFIDE 371
Query: 413 --------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R I AGD CQL P + S AL GG+G +L+ER ++ + T
Sbjct: 372 AAQALEAACWIAIRRASRIIFAGDHCQLPPTVKSIAALRGGLGKTLMERIVE-NKPEVVT 430
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTR 516
L QYRMN+ I ++S YGG + ++ + L D P V WI ++ +
Sbjct: 431 LLKVQYRMNEEIMRFSSDWFYGGQVETAPQIKYRGILDYDNPMV---WIDTSDEAVVASY 487
Query: 517 ---------LPYGSLSLGCEEHLDLAGTGSFY---NEGEAEIVVHHVFSLICAGVSPSA- 563
+P LS E GS + N+GEAE+ + +
Sbjct: 488 DLTESEANSVP-SQLSNDKENAFHEQFVGSSFGRINKGEAELTLKTLVDYFTKIGKQRVL 546
Query: 564 -----IAVQSPYVAQVQHLR----ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
+ V SPY AQVQ+LR +R P + + V T+D FQG+E D ++IS+VRSN
Sbjct: 547 DERIDVGVISPYRAQVQYLRSLIKKRAFFKPYRSLISVNTVDGFQGQERDVILISLVRSN 606
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
G +GFL D RRMNVAITRA + ++ + T+ + F +L
Sbjct: 607 DDGQIGFLRDLRRMNVAITRARMKLIILGNVQTMTKHEFYKKL 649
>gi|17510163|ref|NP_490829.1| Protein SMG-2 [Caenorhabditis elegans]
gi|351051256|emb|CCD73461.1| Protein SMG-2 [Caenorhabditis elegans]
Length = 1069
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 148/460 (32%), Positives = 224/460 (48%), Gaps = 70/460 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ +A+ L RPL +IQGPPGTGKT + I+ VQ+ E VLV +P+N AVD
Sbjct: 446 LNSSQMQAVKQVLT--RPLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVD 503
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK---KSDLRKDL 350
++ EK+ GL +VR+ +R E ++ + + + K ++L+K +
Sbjct: 504 HLAEKIHKTGLKVVRLCARSR-----------EHSETTVPYLTLQHQLKVMGGAELQKLI 552
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
+ LKD+ AG + L K+ KE E+L++A V+ T + AAD + ++ T
Sbjct: 553 Q--LKDE---AGELEFKDDLRYMQLKRVKE--HELLAAADVICCTCSSAADARLSKIRTR 605
Query: 411 DLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
++ ++ +L GD CQL PV++ +KA G+ SL ER L
Sbjct: 606 TVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL 665
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCP 509
G+ +L QYRM+ ++ + S Y GSL + T + VD + KP
Sbjct: 666 --GIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPN------ 717
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
P E L +GT SF N EA V V LI AGV P I V +P
Sbjct: 718 -------KPAFFWHCSGSEELSASGT-SFLNRTEAANVEKLVSKLIKAGVQPHQIGVITP 769
Query: 570 YVAQ------VQHLRERLDD-LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
Y Q H + L+ L E VE+A++D+FQGRE D +I++ VRSN + +GFL
Sbjct: 770 YEGQRSFIVNYMHTQGTLNSKLYE--NVEIASVDAFQGREKDYIIVTCVRSNDILGIGFL 827
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D RR+NVAITRA + +V ++ + + L+ H +
Sbjct: 828 SDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYK 867
>gi|296423838|ref|XP_002841459.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637699|emb|CAZ85650.1| unnamed protein product [Tuber melanosporum]
Length = 1105
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 146/455 (32%), Positives = 216/455 (47%), Gaps = 65/455 (14%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMV 296
SQ A+ L+K PL +IQGPPGTGKT I+ + +VLV AP+N AVD +
Sbjct: 440 SQVHAVKSVLSK--PLSLIQGPPGTGKTVTSATIVYHLAKTNVGQVLVCAPSNVAVDQLT 497
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKD 356
EK+ GL +VR+ +R E V S + SF++ E+ + L + +K
Sbjct: 498 EKIHRTGLKVVRLTAKSR-----------EDVDSPV-SFLSLHEQVR--LNDTNVELVKL 543
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------- 408
L + +L Q K K + +E+L++A V+ T GA DP + +L
Sbjct: 544 GQLKNELGELSSQDEKKFKHLTRNAEREILTNADVICCTCVGAGDPRLAKLKFRTVLIDE 603
Query: 409 -----------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
L K+ +L GD QL PVI+++KA G+ SL ER L G
Sbjct: 604 STQAAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAARAGLHQSLFERLVIL--GCAP 661
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
+L QYRM+ ++ + S Y GSL + T L + F P + DT +
Sbjct: 662 IRLNVQYRMHPCLSEFPSNMFYEGSLQNGVTTQERLRRNVDF---------PWPVADTPM 712
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH- 576
+ S +LG EE + +GT S+ N EA + AGV PS I + +PY Q +
Sbjct: 713 MFWS-NLGNEE-ISASGT-SYLNRTEASACEKIITRFFKAGVLPSQIGIITPYEGQRSYI 769
Query: 577 ---------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
LR+ L +EVA++D+FQGRE D +++S VRSN +GFL D RR
Sbjct: 770 VSSMQTNGALRKEL-----YKEIEVASVDAFQGREKDYIVLSCVRSNDHQGIGFLNDPRR 824
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+NVA+TRA V ++ + + + LL H +
Sbjct: 825 LNVALTRAKFGVVILGNPKVLSKHPLWHYLLLHYK 859
>gi|302345999|ref|YP_003814352.1| hypothetical protein HMPREF0659_A6297 [Prevotella melaninogenica
ATCC 25845]
gi|302149083|gb|ADK95345.1| conserved hypothetical protein [Prevotella melaninogenica ATCC
25845]
Length = 656
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 141/462 (30%), Positives = 224/462 (48%), Gaps = 53/462 (11%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q+KA+ L K + ++ GPPGTGKT L E I + + +V+V A +N AVD + E
Sbjct: 199 TQEKAVNEVLWAK-DVAVVHGPPGTGKTTTLVEAINETLMRESQVMVCAQSNMAVDWICE 257
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G+N++R+GNP R++ K LG + K + ++ + S +RK +R+ +
Sbjct: 258 KLVDRGINVLRIGNPTRVN----DKMLGFTYERKFEAH-PDYPQLWS-IRKAIRELRNNR 311
Query: 358 SLAA-GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-- 412
++ Q + +L + E E+ A+VV +T GA ++ ++ T +
Sbjct: 312 KKSSESYHQKMDRLKSRATELEIRINAELFGEARVVASTLVGANSRIMEGQKFTTLFIDE 371
Query: 413 --------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
R I AGD CQL P + S AL GG+G +L+ER ++ + T
Sbjct: 372 AAQALEAACWIAIRRASRVIFAGDHCQLPPTVKSIAALRGGLGKTLMERIVE-NKPEVVT 430
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTR 516
L QYRMN+ I ++S YGG + ++ + L D P V WI ++ +
Sbjct: 431 LLKVQYRMNEEIMRFSSDWFYGGQVETAPQIKYRGILDYDNPMV---WIDTSDEAVVASY 487
Query: 517 LPYGSLSLGCEEHLDLAGTGSFY-----------NEGEAEIVVHHVFSLICAGVSPSA-- 563
S + L+ +F+ N+GEAE+ + +
Sbjct: 488 DLTESEANSAPSQLNNDRGNAFHEQFVGSSFGRINKGEAELTLKTLVDYFTKIGKQRVLN 547
Query: 564 ----IAVQSPYVAQVQHLR----ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
+ V SPY AQVQ+LR +R P + + V T+D FQG+E D ++IS+VRSN
Sbjct: 548 ERIDVGVISPYRAQVQYLRSLIKKRAFFKPYRSLISVNTVDGFQGQERDVILISLVRSND 607
Query: 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
G +GFL D RRMNVAITRA + ++ + T+ + F +L
Sbjct: 608 DGQIGFLRDLRRMNVAITRARMKLIILGNVQTMTKHEFYKKL 649
>gi|289192489|ref|YP_003458430.1| DNA helicase [Methanocaldococcus sp. FS406-22]
gi|288938939|gb|ADC69694.1| DNA helicase [Methanocaldococcus sp. FS406-22]
Length = 647
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 186/706 (26%), Positives = 324/706 (45%), Gaps = 125/706 (17%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+D + ++ +L+ IER E++F + E+ + EN GRA I
Sbjct: 4 VDLYVKKFMDLIEIERRCEMDFHKNEIIKLGKKRENV------------GRA-------I 44
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL LG +V F G + T +SPGD+V + S+ S + V
Sbjct: 45 LNLKGKFLGESLGCT-IVRF---GRKKPFKTEISPGDVVLI----SKENPLQSDLYANVI 96
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
+G++ ++ ++ P + ++ + VR+D + +T++R EAL
Sbjct: 97 YVGKNFIDVAFDVDV----PKW--VYKERVRVD---LYVNDITFKRMKEAL-----REFA 142
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
++ +A ++ G + L EN +KL+ K ++SQK A+ + K
Sbjct: 143 RKRDKLAYII--LGIEHPEKPLREN-------IKLE-FYDKNLNESQKIAVKKAVLSK-D 191
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKL--SDVGLNIVRV 309
L +I GPPGTGKT + E+I + V+ +VL TA +N A DN++E L L +VRV
Sbjct: 192 LYLIHGPPGTGKTRTITEVIVQEVRFNKHKVLATADSNIAADNILEYLIKKYPDLKVVRV 251
Query: 310 GNPARISPAVASKSLGEIVKSK--------LASFVAEFERKKSDLRK---DLRQCLKDD- 357
G+P RIS + SL ++++ L + E + ++ K R+ + D+
Sbjct: 252 GHPTRISKDLIQHSLPYLIENHEKYQEILSLREKIKEIKEQRDKFLKPSPRWRRGMSDEQ 311
Query: 358 --------------------SLAAGI--RQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT 395
S+A I + +K++ L + ++ + E+LS A V+++T
Sbjct: 312 ILKVAKRKKSYRGIPKEKIISMAEWIIRNRKIKRIINNLDEITEKIMNEILSEADVIVST 371
Query: 396 NTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKAL 436
N+ A +++ + FD+V GK+ I+AGD QL P +LS
Sbjct: 372 NSMAGSEILKGWE-FDVVVIDEGSQAMEPSCLIPIVKGKKLIMAGDHKQLPPTVLSENE- 429
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ +L ER + ++ L QYRMN+ I + +K Y L + +V + L+D
Sbjct: 430 --ELKKTLFERLIKKYPE-FSSILEIQYRMNEKIMEFPNKMFYDNKLKADESVKNITLLD 486
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
VK I + +++ +P + + E D + S+YN EAE V+ V L+
Sbjct: 487 --LVKEEEIDEADRDIINE-IPVQFIHVEGVERKD-KESPSYYNIEEAEKVLEVVKKLVK 542
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
+ + I +PY AQV++LR ++ +EV T+D FQGRE +A++IS VR+
Sbjct: 543 YKIPTNVI---TPYDAQVRYLRRMFEE--HNIDIEVNTVDGFQGRENEAIVISFVRTKNF 597
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
GFL D RR+NVAITRA + + ++ + + + +++ R
Sbjct: 598 ---GFLRDLRRLNVAITRAKRKLILIGNEHLLKQDKVYNEMIKWAR 640
>gi|237720100|ref|ZP_04550581.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229450652|gb|EEO56443.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 649
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 217/450 (48%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 225 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 284
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 285 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 338
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 339 RMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFSTLFIDEAAQALEAAC 398
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ L ++ L QYRM+
Sbjct: 399 WIAIRKADRVILAGDHCQLPPTIKCIEAARGGLDHTLMEKVVQLKPSAVSL-LKVQYRMH 457
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+AI + S Y G L ++ V L DTP WI +
Sbjct: 458 EAIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 499
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 500 -DFHEDFVGE-SFGRINKQEANLLLQELEAYI-ERIGKERILDERIDFGLISPYKAQVQY 556
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 557 LRGKIKGNSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 616
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 617 TRARMKLVILGDASTLTKHPFYKRLMLFIK 646
>gi|391341257|ref|XP_003744947.1| PREDICTED: regulator of nonsense transcripts 1-like [Metaseiulus
occidentalis]
Length = 1137
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 137/443 (30%), Positives = 211/443 (47%), Gaps = 66/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + +QG VLV AP+N AVD + EK+ L +VR
Sbjct: 453 QRPLSLIQGPPGTGKTVTSATIVYQLAKQGHGPVLVCAPSNIAVDQLTEKIHRTRLKVVR 512
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS--LAAGIRQL 366
+ +R A+ S + +++ + + S+L+K Q LKD++ L++ +
Sbjct: 513 LCAKSR--EAINSPVSFLALHNQVRNMEVNASQHISELKK--LQQLKDETGELSSADEKR 568
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
+ L + ++ E+L +A V+ T GA DP I R ++
Sbjct: 569 YRILKRLCER-------ELLEAADVICCTCVGAGDPRILRFKFHSILIDECMQATEPECM 621
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ + A G+ SL ER L G+ +L QYRM+
Sbjct: 622 VPVVLGAKQLILVGDHCQLGPVVMCKGAARAGLSQSLFERLVVL--GIRPLRLEVQYRMH 679
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+++ + S Y GSL + L VD PF +P P+
Sbjct: 680 PSLSEFPSNFFYEGSLQNGVYAEERRLKGVDFPFPQP----DKPMFFY-----------C 724
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
C ++A +G S+ N EA +V V + + V P I V +PY Q L + +
Sbjct: 725 CNGQEEIAASGTSYLNRTEAALVEKIVTRFLKSSVKPEQIGVITPYEGQRAFLVQYM--- 781
Query: 585 PEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
+ +G +EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA
Sbjct: 782 -QYSGSLHSKLYQDIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPRRLNVALTRA 840
Query: 636 CKHVAVVCDSSTICHNTFLARLL 658
+ +V + + LL
Sbjct: 841 RYGIIIVGNPKVLSKQPLWNHLL 863
>gi|7509302|pir||T26415 hypothetical protein Y106G6D.5 - Caenorhabditis elegans
Length = 693
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 136/457 (29%), Positives = 219/457 (47%), Gaps = 47/457 (10%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + +T + SQ A++ +N +R LL IQGPPGTGKT ++ EI+ + +++ ++VLV APT
Sbjct: 233 GNLPETLNPSQVAAVSAAMNTQRNLLCIQGPPGTGKTRVIAEIVHQLMKKKKKVLVCAPT 292
Query: 289 NAAVDN--------MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
+ AV N M+E++ + A + + + E K AS + E +
Sbjct: 293 HVAVRNAMDATTGRMIEEMPE---------EKAEQQLCLLANTKDEFQNHKSASKLEEIK 343
Query: 341 RKKSDL--------RKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVV 392
++ S + + L +S+ I + TL + + E +A V+
Sbjct: 344 KQLSTMSTSDPLYKKMSYEYYLIRNSIFRSIFYPKLAVFSTLGTSSIQKLPEYHWNADVM 403
Query: 393 LATNTGAADPLIRRLDTFDLVG-KRCILAGDQCQLAPVILSRKALEGGIGVSLLER-AAT 450
+ + K+ IL GDQ QL V+LS KA++G +SL+E+ A
Sbjct: 404 IVDEAAQCTEPATWVPVLTTPSCKKLILVGDQKQLPAVVLSDKAMKGNFKLSLMEKLAEE 463
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
+ L QYRMN I +W+++ Y L + STV+ L D CP
Sbjct: 464 FSSNNINILLNEQYRMNKKIMNWSNEVFYENQLTAHSTVSDITLRDI----------CPN 513
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAG----TGSFYNEGEAEIVVHHVFSLIC-AGVSPSAIA 565
L D L + + E D + + SF N E +V +V L+ G++P AIA
Sbjct: 514 LPEDHVLNNPIMMINMENVKDRSHEEFESHSFTNTDELNLVTEYVNRLVVDLGINPKAIA 573
Query: 566 VQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
V SPY AQ++ LR + V+V T+D+FQG E VI +VR N G +GFL ++
Sbjct: 574 VISPYYAQIEKLRRSI-----PFRVDVNTVDAFQGHERQVVIFCLVRDNDEGQIGFLNET 628
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + ++ + + N L +L +H++
Sbjct: 629 RRLNVAVTRARRQFVLIGNGRMMKGNKHLLKLYKHLQ 665
>gi|357621770|gb|EHJ73491.1| putative nonsense-mediated mrna decay protein 1 [Danaus plexippus]
Length = 1037
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 151/458 (32%), Positives = 226/458 (49%), Gaps = 72/458 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+Q G VLV AP+N AVD
Sbjct: 451 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVRQNGGPVLVCAPSNTAVD 508
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKK------SDLR 347
+ EK+ GL +VR+ +R E ++S + SF+A E+ + S+LR
Sbjct: 509 QLTEKIHRTGLKVVRLCAKSR-----------EAMESSV-SFLALHEQARALGSADSELR 556
Query: 348 KDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL 407
K R LK++ AG +L + + + + +L +A VV T GA DP + R+
Sbjct: 557 KLTR--LKEE---AG--ELSAADERRYRALRRAAERRLLDAADVVCTTCVGAGDPRVARM 609
Query: 408 DTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERA 448
++ ++ IL GD CQL PV++ +KA + G+ SL ER
Sbjct: 610 RFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERL 669
Query: 449 ATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWIT 506
L G+ +L QYRM+ ++ + S Y GSL + + L +D P+ +P
Sbjct: 670 VVL--GIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPWPRPDR-- 725
Query: 507 QCPLLLLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIA 565
P+ T+ G EE +AG+G S+ N EA V + AGV P I
Sbjct: 726 --PMFFYVTQ--------GQEE---IAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIG 772
Query: 566 VQSPYVAQ----VQHLRERLDDLPE-AAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+ +PY Q VQH++ + + +EVA++D+FQGRE D +I+S VRSN +G
Sbjct: 773 IITPYEGQRSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIG 832
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
FL D RR+NVA+TRA + VV + + LL
Sbjct: 833 FLSDPRRLNVALTRAKYGLIVVGNPKVLSKQPLWNHLL 870
>gi|29347483|ref|NP_810986.1| helicase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339383|gb|AAO77180.1| putative helicase [Bacteroides thetaiotaomicron VPI-5482]
Length = 652
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 145/454 (31%), Positives = 220/454 (48%), Gaps = 74/454 (16%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 225 RDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 284
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA 360
NP R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 285 NPTR-------------VNDKMLSFTYERRFENHSAYPELWGIRKSIREMGSRMRRGSYS 331
Query: 361 A--GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL---- 412
G+R + +L + E ++ SA+V+ +T + L+ RR T +
Sbjct: 332 EREGMRSRMSRLRDRATELEILINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAA 391
Query: 413 ------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
R ILAGD CQL P I +A GG+ +L+E+ ++ L
Sbjct: 392 QALEAACWIAIRKADRVILAGDHCQLPPTIKCIEAARGGLDHTLMEKVVQQKPSAVSL-L 450
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLP 518
QYRM++AI + S+ Y G L ++ V + L DTP WI + D
Sbjct: 451 KVQYRMHEAIMRFPSEWFYNGELEAAPEVRNRGILDFDTPM---NWIDTSEM---DFHEE 504
Query: 519 YGSLSLG----CEEHLDLAGTGSFYNE-GEAEIVVHHV-FSLICAGVSPSAIAVQSPYVA 572
+ S G E +L L ++ + G+A I+ + F LI SPY A
Sbjct: 505 FVGESFGRINKQEANLLLQELEAYISRIGKARILDESIDFGLI------------SPYKA 552
Query: 573 QVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
QVQ+LR ++ P + + V T+D FQG+E D V IS+VR+N G +GFL D RRM
Sbjct: 553 QVQYLRSKIRGSSFLRPFRSLITVNTVDGFQGQERDVVFISLVRANEDGQIGFLNDLRRM 612
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
NVAITRA + ++ D++T+ + F +L+++IR
Sbjct: 613 NVAITRARMKLVILGDATTLTKHAFYRKLIQYIR 646
>gi|118388103|ref|XP_001027152.1| phage head-tail adaptor, putative family protein [Tetrahymena
thermophila]
gi|89308922|gb|EAS06910.1| phage head-tail adaptor, putative family protein [Tetrahymena
thermophila SB210]
Length = 1112
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 140/450 (31%), Positives = 215/450 (47%), Gaps = 71/450 (15%)
Query: 250 KRPLLIIQGPPGTGKT----GLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEKLSDVG 303
++PL +IQGPPGTGKT ++ ++ + G+R VLV AP+N VD + E++ G
Sbjct: 455 QQPLCLIQGPPGTGKTFTSTAIIYHLVKNIQKSGQRGQVLVCAPSNIVVDQLAERIHQAG 514
Query: 304 LNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAA 361
+ +VR+ + +R IS +V +L V+S E + K +L++D + DD
Sbjct: 515 IKVVRMCSRSREMISSSVEFLTLHNQVRSLDFDEYKEMQ-KLLELKEDQGELDHDDEDKY 573
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------- 413
LK+ G+ KE+L +A+V+ +T +ADP ++ + F V
Sbjct: 574 ---YSLKRQGE----------KEILRNAEVICSTCISSADPRLKDI-RFKHVLIDEATQA 619
Query: 414 ------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLT 461
K IL GD QL PV+ R + G+ SL ER ++ G+ +L
Sbjct: 620 IEPECLLPMLKGAKHVILVGDHRQLGPVVTCRDTAKAGLNKSLFERMVSM--GIRPIRLQ 677
Query: 462 TQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGS 521
QYRM+ ++ + S Y G+L + T F P PL+ L+
Sbjct: 678 VQYRMHPDLSIFPSNTFYEGTLQNGVTFNDRQF-HGEFPWPN--KNKPLMFLN------- 727
Query: 522 LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL 581
S G EE + +GT S+ N E ++ VF LI A V P I + +PY Q R +
Sbjct: 728 -SCGVEE-ISSSGT-SYLNRQETALIEDIVFRLIKAKVKPEQIGIITPYKGQ----RFYI 780
Query: 582 DDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
D G +E+A++D FQGRE D +IIS VRSN +GFL D RR+NVAI
Sbjct: 781 GDYLSKNGRLNHVLYRQIEIASVDGFQGREKDYIIISCVRSNECQGIGFLTDPRRLNVAI 840
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + +V ++ + + LL H++
Sbjct: 841 TRARYGLIIVGNAKVLARDNLWNNLLNHMK 870
>gi|154492784|ref|ZP_02032410.1| hypothetical protein PARMER_02423 [Parabacteroides merdae ATCC
43184]
gi|154087089|gb|EDN86134.1| putative DNA helicase [Parabacteroides merdae ATCC 43184]
Length = 640
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 231/486 (47%), Gaps = 89/486 (18%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ++A+ L K + I+ GPPGTGKT L E I + + +V+V A +N AVD + E
Sbjct: 193 SQEEAVNHVLAAK-DVSIVHGPPGTGKTTTLVEAIYETLHRENQVMVCAQSNTAVDWISE 251
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G++++R+GNP RI+ K+ SF +ER+ + D
Sbjct: 252 KLVDRGIHVLRIGNPTRIN-------------DKMLSFT--YERRF--------ESHPDY 288
Query: 358 SLAAGIRQLLKQLGKTLKKK---EKETVK-------------------EVLSSAQVVLAT 395
+ GIR+ ++++ L+KK EKET + E+ A+VV T
Sbjct: 289 AELWGIRKAIREIQSNLRKKSHGEKETARNRLSRLRFRATELEVKIDTELFDEARVVACT 348
Query: 396 NTGAADPLI--RRLDTFDL--------------VGK--RCILAGDQCQLAPVILSRKALE 437
G+A+ ++ R T + +GK R ILAGD QL P I +A
Sbjct: 349 LVGSANRVLTNRNFTTLFIDEAAQALEAACWIAIGKADRVILAGDHHQLPPTIKCIEAAR 408
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLV 495
GG+ +L+++ T + + L TQYRMN+ I + S+ Y L S+ V L
Sbjct: 409 GGLDHTLMQKI-TDRKPETVSLLKTQYRMNEDIMRFPSRWFYHDELQSAPEVKHRGILEF 467
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNE--GEAEIVVHHV-F 552
DTP V W+ + RL + +E L T Y E G+ ++ + F
Sbjct: 468 DTPVV---WLDTADCHFEEDRLDDSMSRINRDEATLLVSTLQKYIEKIGKERVLDESIDF 524
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRE--RLDDL--PEAAGVEVATIDSFQGREADAVII 608
LI SPY +QVQ++R + D P + T+D FQG+E D ++I
Sbjct: 525 GLI------------SPYKSQVQYIRGLIKRDTFFKPFRRLITAHTVDGFQGQERDVIMI 572
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVK 668
S+VR+N G +GFLGD RRMNVAITRA + ++ D+ T+ + F L +I G+V
Sbjct: 573 SLVRANDKGRIGFLGDLRRMNVAITRARMKLMILGDAPTLTRHAFYKELYEYIWENGQVI 632
Query: 669 HAEPGS 674
+P S
Sbjct: 633 TVQPPS 638
>gi|423345058|ref|ZP_17322747.1| hypothetical protein HMPREF1060_00419 [Parabacteroides merdae
CL03T12C32]
gi|409222844|gb|EKN15781.1| hypothetical protein HMPREF1060_00419 [Parabacteroides merdae
CL03T12C32]
Length = 639
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 231/486 (47%), Gaps = 89/486 (18%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ++A+ L K + I+ GPPGTGKT L E I + + +V+V A +N AVD + E
Sbjct: 192 SQEEAVNHVLAAK-DVSIVHGPPGTGKTTTLVEAIYETLHRENQVMVCAQSNTAVDWISE 250
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G++++R+GNP RI+ K+ SF +ER+ + D
Sbjct: 251 KLVDRGIHVLRIGNPTRIN-------------DKMLSFT--YERRF--------ESHPDY 287
Query: 358 SLAAGIRQLLKQLGKTLKKK---EKETVK-------------------EVLSSAQVVLAT 395
+ GIR+ ++++ L+KK EKET + E+ A+VV T
Sbjct: 288 AELWGIRKAIREIQSNLRKKSHGEKETARNRLSRLRFRATELEVKIDTELFDEARVVACT 347
Query: 396 NTGAADPLI--RRLDTFDL--------------VGK--RCILAGDQCQLAPVILSRKALE 437
G+A+ ++ R T + +GK R ILAGD QL P I +A
Sbjct: 348 LVGSANRVLTNRNFTTLFIDEAAQALEAACWIAIGKADRVILAGDHHQLPPTIKCIEAAR 407
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLV 495
GG+ +L+++ T + + L TQYRMN+ I + S+ Y L S+ V L
Sbjct: 408 GGLDHTLMQKI-TDRKPETVSLLKTQYRMNEDIMRFPSRWFYHDELQSAPEVKHRGILEF 466
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNE--GEAEIVVHHV-F 552
DTP V W+ + RL + +E L T Y E G+ ++ + F
Sbjct: 467 DTPVV---WLDTADCHFEEDRLDDSMSRINRDEATLLVSTLQKYIEKIGKERVLDESIDF 523
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRE--RLDDL--PEAAGVEVATIDSFQGREADAVII 608
LI SPY +QVQ++R + D P + T+D FQG+E D ++I
Sbjct: 524 GLI------------SPYKSQVQYIRGLIKRDTFFKPFRRLITAHTVDGFQGQERDVIMI 571
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVK 668
S+VR+N G +GFLGD RRMNVAITRA + ++ D+ T+ + F L +I G+V
Sbjct: 572 SLVRANDKGRIGFLGDLRRMNVAITRARMKLMILGDAPTLTRHAFYKELYEYIWENGQVI 631
Query: 669 HAEPGS 674
+P S
Sbjct: 632 TVQPPS 637
>gi|449685514|ref|XP_002161143.2| PREDICTED: regulator of nonsense transcripts 1-like [Hydra
magnipapillata]
Length = 1153
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 208/444 (46%), Gaps = 63/444 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG ++LV AP+N AVD + EK+ GL +VR
Sbjct: 502 QRPLSLIQGPPGTGKTVTSASIVYHLAKQGLGQILVCAPSNIAVDQLTEKIHKTGLKVVR 561
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S + + + D +L+ Q LKDD +
Sbjct: 562 LAAKSR-----------EAIDSPVGFLALHNQVRNMDSMPELQKLQQLKDDQ--GELSSS 608
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-TFDLV------------ 413
++ KTLK + KE+L A V+ T GA DP +R F V
Sbjct: 609 DEKRYKTLKTSAE---KELLQHADVICTTCIGAGDPRLRVAKLRFRCVLIDESTQATEPE 665
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ +L GD CQL PV++ +KA G+ SL ER L G+ +L QYR
Sbjct: 666 CMVPIVHGTKQLVLVGDHCQLGPVVMCKKAASAGLSQSLFERLVVL--GIRPIRLQVQYR 723
Query: 466 MNDAIASWASKEMYGGSLISSSTVA--SHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
M+ +++ + S Y G+L + TVA S VD P+ + P+ T
Sbjct: 724 MHPSLSEFPSNLFYDGTLQNGVTVAERSQPGVDFPWP----VGDKPMFFYATT------- 772
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD- 582
+E + +GT S+ N EA V + AGV P + + +PY Q ++ +
Sbjct: 773 --GQEEISSSGT-SYLNRTEAATVEKIATRFLRAGVKPEQMGIITPYEGQRAYIVAYMQF 829
Query: 583 --DLPEA--AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L + +EVA++D+FQGRE D +I+S RSN +GFL D RR+NVA+TR+
Sbjct: 830 SGSLHSSLYQNIEVASVDAFQGREKDYIIMSCARSNEHQGIGFLKDPRRLNVALTRSKYG 889
Query: 639 VAVVCDSSTICHNTFLARLLRHIR 662
+ ++ + + LL +
Sbjct: 890 LIIIGNPKVLSKQPLWNHLLNDYK 913
>gi|423723542|ref|ZP_17697691.1| hypothetical protein HMPREF1078_01678 [Parabacteroides merdae
CL09T00C40]
gi|409241252|gb|EKN34022.1| hypothetical protein HMPREF1078_01678 [Parabacteroides merdae
CL09T00C40]
Length = 639
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 231/486 (47%), Gaps = 89/486 (18%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ++A+ L K + I+ GPPGTGKT L E I + + +V+V A +N AVD + E
Sbjct: 192 SQEEAVNHVLAAK-DVSIVHGPPGTGKTTTLVEAIYETLHRENQVMVCAQSNTAVDWISE 250
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G++++R+GNP RI+ K+ SF +ER+ + D
Sbjct: 251 KLVDRGIHVLRIGNPTRIN-------------DKMLSFT--YERRF--------ESHPDY 287
Query: 358 SLAAGIRQLLKQLGKTLKKK---EKETVK-------------------EVLSSAQVVLAT 395
+ GIR+ ++++ L+KK EKET + E+ A+VV T
Sbjct: 288 AELWGIRKAIREIQSNLRKKSHGEKETARNRLSRLRFRATELEVKIDTELFDEARVVACT 347
Query: 396 NTGAADPLI--RRLDTFDL--------------VGK--RCILAGDQCQLAPVILSRKALE 437
G+A+ ++ R T + +GK R ILAGD QL P I +A
Sbjct: 348 LVGSANRVLTNRNFTTLFIDEAAQALEAACWIAIGKADRVILAGDHHQLPPTIKCIEAAR 407
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLV 495
GG+ +L+++ T + + L TQYRMN+ I + S+ Y L S+ V L
Sbjct: 408 GGLDHTLMQKI-TDRKPETVSLLKTQYRMNEDIMRFPSRWFYHDELQSAPEVKHRGILEF 466
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNE--GEAEIVVHHV-F 552
DTP V W+ + RL + +E L T Y E G+ ++ + F
Sbjct: 467 DTPVV---WLDTADCHFEEDRLDDSMSRINRDEATLLVSTLQKYIEKIGKERVLDESIDF 523
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRE--RLDDL--PEAAGVEVATIDSFQGREADAVII 608
LI SPY +QVQ++R + D P + T+D FQG+E D ++I
Sbjct: 524 GLI------------SPYKSQVQYIRGLIKRDTFFKPFRRLITAHTVDGFQGQERDVIMI 571
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVK 668
S+VR+N G +GFLGD RRMNVAITRA + ++ D+ T+ + F L +I G+V
Sbjct: 572 SLVRANDKGRIGFLGDLRRMNVAITRARMKLMILGDAPTLTRHAFYKELYEYIWENGQVI 631
Query: 669 HAEPGS 674
+P S
Sbjct: 632 TVQPPS 637
>gi|299147977|ref|ZP_07041040.1| putative DNA helicase [Bacteroides sp. 3_1_23]
gi|298514160|gb|EFI38046.1| putative DNA helicase [Bacteroides sp. 3_1_23]
Length = 649
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 142/450 (31%), Positives = 216/450 (48%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 225 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 284
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 285 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 338
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 339 RISHLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFSTLFIDEAAQALEAAC 398
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ L ++ L QYRM+
Sbjct: 399 WIAIRKADRVILAGDHCQLPPTIKCIEAARGGLDHTLMEKVVQLKPSAVSL-LKVQYRMH 457
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+AI + S Y G L ++ V L DTP WI +
Sbjct: 458 EAIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 499
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 500 -DFHEDFVGE-SFGRINKQEANLLLQELEAYI-ERIGKERILDERIDFGLISPYKAQVQY 556
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 557 LRGKIKGNSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 616
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 617 TRARMKLVILGDASTLTKHPFYKRLMLFIK 646
>gi|403412933|emb|CCL99633.1| predicted protein [Fibroporia radiculosa]
Length = 1074
Score = 176 bits (445), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 141/456 (30%), Positives = 213/456 (46%), Gaps = 61/456 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K P+ +IQGPPGTGKT + + +VLV AP+N AVD
Sbjct: 441 LNHSQMYAVKSVLQK--PISLIQGPPGTGKTVTSASTVYHLAKMNPGQVLVCAPSNVAVD 498
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKK-SDLRKDLRQ 352
+ EK+ GL +VR+ +R A+ S + ++A++ E +K L+ + +
Sbjct: 499 QLTEKIHATGLKVVRLTAKSR--EALDSSVSFLTLHQQVANYTTHVELQKLIQLKNEQGE 556
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD---- 408
+D + K ++ KE+LS+A V+ T GA DP + +L
Sbjct: 557 LSSNDE-------------RKYKALIRQCEKEILSAADVICCTCVGAGDPRLSKLKFRTV 603
Query: 409 ---------------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
L K+ +L GD QL PVI+++KA G+ SL ER L
Sbjct: 604 LIDEATQAAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAARAGLTQSLFERLVVL-- 661
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
G +L QYRM+ ++ + S Y G+L + T L + F P + P+
Sbjct: 662 GNRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWP--VPDTPMFFY 719
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
+LG EE + +GT SF N EA V V +GV PS I V +PY Q
Sbjct: 720 Q--------NLGQEE-ISSSGT-SFLNRTEASNVEKIVTKFFKSGVVPSQIGVVTPYEGQ 769
Query: 574 VQHLRERLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
++ + DL + +EVA++D+FQGRE D +I+S VRSN +GFL D R
Sbjct: 770 RSYIVNYMQFNGSLKKDLYKE--IEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPR 827
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
R+NVA+TRA V ++ + + + LL H +
Sbjct: 828 RLNVALTRAKYGVVILGNPKVLSKHPLWHYLLTHYK 863
>gi|190349039|gb|EDK41614.2| hypothetical protein PGUG_05712 [Meyerozyma guilliermondii ATCC
6260]
Length = 949
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 146/478 (30%), Positives = 222/478 (46%), Gaps = 82/478 (17%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR------------------AV 276
++SQ+ A+ L +RPL +IQGPPGTGKT II
Sbjct: 387 LNESQENAVRTVL--QRPLSLIQGPPGTGKTFTSATIIYHLRNMINKKPSGKKSSKSKKK 444
Query: 277 QQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV 336
Q E++LV AP+N AVD++ EK++++G+ ++R+ +R A S+ + L + +
Sbjct: 445 QTAEKILVCAPSNVAVDHLAEKIANLGVKVMRLTAKSRED---AESSVSHL---SLHNLI 498
Query: 337 AEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATN 396
+ ++ Q L+D A G +L + K ++ K V+ +V+ +T
Sbjct: 499 VQTNKR--------LQKLQDKKNAEG--ELSAKEAVEFHKLTRKAEKSVMEDCEVICSTC 548
Query: 397 TGAADPLIRRLDT--FDLV--------------------GKRCILAGDQCQLAPVILSRK 434
GA D RLD+ F V K+ IL GD QL PVIL +K
Sbjct: 549 VGAGD---HRLDSMVFRAVLIDESTQASEPEIMIPIVKGAKQVILVGDHQQLGPVILHKK 605
Query: 435 ALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL 494
A + G+ SL ER L G + +L QYRM+ ++ + S Y GSL + + S
Sbjct: 606 AGDAGLKQSLFERLVVL--GHVPIRLEVQYRMHPCLSEFPSNMFYEGSLQNGVSSESRTF 663
Query: 495 VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSL 554
+ F P + P++ YG E + +G S+ N EA V + L
Sbjct: 664 KNETFPWP--VLDFPMMFWAN---YG------REEISASGY-SYLNRVEAMNVEKIITRL 711
Query: 555 ICAGVSPSAIAVQSPYVAQ----VQHLR---ERLDDLPEAAGVEVATIDSFQGREADAVI 607
GV I V +PY Q +QH+ +D + + VEVA++D+FQGRE D +I
Sbjct: 712 FKQGVKAEQIGVVTPYEGQRAYILQHMSLTGSLVDKREQYSEVEVASVDAFQGREKDYII 771
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+S VR+N +GFL DSRR+NVA+TRA + +V + + N LL H R G
Sbjct: 772 LSCVRANETHGIGFLSDSRRLNVALTRAKYGLVIVGNPRCLSKNKLWNHLLIHFREKG 829
>gi|317504722|ref|ZP_07962683.1| DNA helicase [Prevotella salivae DSM 15606]
gi|315664160|gb|EFV03866.1| DNA helicase [Prevotella salivae DSM 15606]
Length = 649
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 141/456 (30%), Positives = 220/456 (48%), Gaps = 63/456 (13%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q++A+ L K + ++ GPPGTGKT L E I + + +VLV A +N A+D + E
Sbjct: 210 TQERAVNEVLWAK-DVAVVHGPPGTGKTTTLVEAINETLMKESQVLVCAQSNMALDWISE 268
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASF----------VAEFERKKSDLR 347
+L D G+N++RVGNP R++ K LG + + S A E + R
Sbjct: 269 QLVDRGINVLRVGNPTRVN----DKMLGFTYERRFESHPDYPQLWAIRKAIRELRSHRKR 324
Query: 348 KDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL---ATNTGAADPLI 404
D R K + L A +L ++ L + + ++ SA VL T D
Sbjct: 325 GDERFHQKFEHLKARATELEIRINSNLFDEARVVASTLVGSANRVLEGMKFGTLFIDEAA 384
Query: 405 RRLDTFDLVG----KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
+ L+ + R +LAGD CQL P++ S AL+ G+G SL+ER H+ + T L
Sbjct: 385 QALEAACWIPMRRVTRVVLAGDHCQLPPMVKSIAALKAGLGKSLMERIVE-HKPDVVTLL 443
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL--- 517
QYRMN+ I ++S Y G + S+ + ++D P+ D+++
Sbjct: 444 KIQYRMNEKIMKFSSDWFYHGEVESAPQTRNRGILD---------LDEPIEWRDSKVDDE 494
Query: 518 -----------PYGSLSLGCEEHLDLAGTGSFYNE-GEAEIVVHHVFSLICAGVSPSAIA 565
+G ++ E L L ++ + G+ I+ H+ +
Sbjct: 495 EGDSGESFVGESFGRIN-KAEAQLTLDTLEDYFKKIGKQRILDEHI-----------DVG 542
Query: 566 VQSPYVAQVQHL----RERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
V SPY AQVQ+L R+R P + V T+D FQG+E D ++IS+VRSN G +GF
Sbjct: 543 VISPYRAQVQYLRRLIRKRESFKPYRHSISVNTVDGFQGQERDIILISLVRSNDQGQIGF 602
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
L D RRMNVAITRA + ++ D +T+C + F +L
Sbjct: 603 LNDLRRMNVAITRARMKLIILGDKATLCRHPFYRKL 638
>gi|321463387|gb|EFX74403.1| hypothetical protein DAPPUDRAFT_57163 [Daphnia pulex]
Length = 1129
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 139/455 (30%), Positives = 216/455 (47%), Gaps = 77/455 (16%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ + G VLV AP+N AVD + EK+ GL +VR
Sbjct: 464 QRPLTLIQGPPGTGKTVTSATIVYHLAKLGSGPVLVCAPSNIAVDQLTEKIHRTGLKVVR 523
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ +R E + S + SF+A L +R CL+ S + QL +
Sbjct: 524 LCAKSR-----------EAIDSPV-SFLA--------LHNQVR-CLEGASELRKLVQLKE 562
Query: 369 QLGKTLKKKEK-------ETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------- 413
++G+ + EK + +E+L +A V+ T GA D + R+ ++
Sbjct: 563 EVGELSQGDEKRYRMLKRQAERELLEAADVLACTCVGAGDVRLARIKFASILIDESMQAT 622
Query: 414 -----------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
++ IL GD CQL PV++ + A + G+ SL ER L G+ +L
Sbjct: 623 EPECMVPVVLGARQLILVGDHCQLGPVVMCKPAAKAGLSQSLFERLVVL--GIRPFRLEV 680
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ ++ + S Y GSL + +L VD P+ P R +
Sbjct: 681 QYRMHPRLSEFPSNFFYEGSLQNGVCAEDRILRGVDFPWPMPD------------RPMFF 728
Query: 521 SLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
++LG EE +AG+G S+ N EA V + +GV P I + +PY Q +L +
Sbjct: 729 YVTLGQEE---IAGSGTSYLNRTEASNVEKIATRFLRSGVKPEQIGIITPYEGQRAYLVQ 785
Query: 580 RLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+ +E+A++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TR
Sbjct: 786 YMQHQGSLHAKLYQDIEIASVDAFQGREKDLIIMSCVRSNENQGIGFLNDPRRLNVAMTR 845
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKH 669
A + +V + + + H+ +F + H
Sbjct: 846 ARYGIIIVGNPKVLAKQP----VWNHLLHFYKENH 876
>gi|393785219|ref|ZP_10373372.1| hypothetical protein HMPREF1071_04240 [Bacteroides salyersiae
CL02T12C01]
gi|392662922|gb|EIY56477.1| hypothetical protein HMPREF1071_04240 [Bacteroides salyersiae
CL02T12C01]
Length = 634
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 139/452 (30%), Positives = 215/452 (47%), Gaps = 80/452 (17%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP R
Sbjct: 211 IVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNPTR 270
Query: 315 ISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC-----LKDDSLAAG 362
V K+ SF E FE + +RK +R+ + S
Sbjct: 271 -------------VNDKMLSFTYERRFENHPAYTELWSVRKSIREISGHIRKGNYSERES 317
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-------- 412
+R + +L + E +++ SSA+V+ +T + ++ RR T +
Sbjct: 318 MRNRISRLRDRATELEILINEDLFSSARVIASTLVSSNHRILEGRRFSTLFIDEAAQALE 377
Query: 413 --------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
R I AGD CQL P I +A GG+ +L+E+ T ++ V + L QY
Sbjct: 378 AACWIAIRKADRVIFAGDHCQLPPTIKCIEAARGGLDQTLMEKVVT-NKPVSVSLLKVQY 436
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
RMN+AI + S+ Y L S+ V L DTP V WI L
Sbjct: 437 RMNEAIMRFPSEWFYNNQLESAPEVRHRGILDYDTPMV---WIDTSEL------------ 481
Query: 523 SLGCEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQ 573
E H + G SF N+ EA++++ + + I + + + + SPY AQ
Sbjct: 482 ----EFHEEFVGE-SFGRINKPEADLLIQELKNYI-QRIGENRVFDERIDFGLISPYKAQ 535
Query: 574 VQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
VQ+LR ++ P + + T+D FQG+E D + IS+VR+N G +GFL D RRMN
Sbjct: 536 VQYLRNKIKSSSFFRPFRELITINTVDGFQGQERDVIFISLVRANENGQIGFLNDLRRMN 595
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
VAITRA + ++ ++ T+ + F +L+ ++
Sbjct: 596 VAITRARMKLVILGEAQTLTRHAFYKKLMEYV 627
>gi|254571547|ref|XP_002492883.1| ATP-dependent RNA helicase of the SFI superfamily, required for
nonsense mediated mRNA decay and for [Komagataella
pastoris GS115]
gi|238032681|emb|CAY70704.1| ATP-dependent RNA helicase of the SFI superfamily, required for
nonsense mediated mRNA decay and for [Komagataella
pastoris GS115]
Length = 941
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 149/477 (31%), Positives = 220/477 (46%), Gaps = 77/477 (16%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVD 293
+ SQ A+ L ++ L +IQGPPGTGKT I+ A + ++VLVTA +N AVD
Sbjct: 376 LNPSQVNAVKSVLQQR--LSLIQGPPGTGKTVTSATIVYHLAKSKKKKVLVTASSNIAVD 433
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VRV +R + A+ SL +V +
Sbjct: 434 HLASKLEDIGLKVVRVTARSRENVESAIDHLSLSSLVSNT-------------------- 473
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKK-------KEKETVKEVLSSAQVVLATNTGAADPLI 404
++ + + + +LG KK + K+ E+L+ A VV T +GA D +
Sbjct: 474 ----NNPVLKKLLKKKDELGSLSKKDMNIYISQTKKAEAEILAEAHVVCCTCSGAGDKRL 529
Query: 405 RRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
+ F V K+ IL GD QL PVIL A + G+ SL
Sbjct: 530 ANI-KFPYVLIDESTQPSEPESLIPIVKGAKQVILVGDHQQLGPVILHNGAAKAGLRQSL 588
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
ER L G + +L QYRM+ +++ + S Y GSL + + L+ + F P
Sbjct: 589 FERLIKL--GHIPIRLEVQYRMHPSLSEFPSNMFYDGSLQNGVSHEQRLIRRSSFPWPA- 645
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
PLL + YG+ E + ++GT SF N EA + L+ G+ P I
Sbjct: 646 -PGIPLLFWSS---YGT------EEISISGT-SFLNRSEAMNCEKIISRLLSEGIKPHQI 694
Query: 565 AVQSPYVAQVQHLRERL------DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA 618
V +PY Q ++ + L D VEVA++D+FQGRE D +I S RSN
Sbjct: 695 GVITPYQGQRDYIVQYLLMNGAHPDREIYQDVEVASVDAFQGREKDFIIFSCTRSNHTNT 754
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSF 675
+GFL D+RR+NVAITRA + V+ + T+ + RLL H R G + SF
Sbjct: 755 IGFLKDARRLNVAITRAKYGLFVLGNIKTLQKDPLWNRLLVHFRDKGALVEGRLDSF 811
>gi|134046854|ref|YP_001098339.1| putative DNA helicase [Methanococcus maripaludis C5]
gi|132664479|gb|ABO36125.1| putative DNA helicase [Methanococcus maripaludis C5]
Length = 633
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 183/699 (26%), Positives = 318/699 (45%), Gaps = 135/699 (19%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+ + L+R ERD E+ F +EE+ + EN GRA L +
Sbjct: 7 YVNKFKGLVRKERDHEINFHKEEIKKLGIKRENV------------GRAILNLNGKVL-- 52
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
L G ++V R + T +S GD+V + S+G S + G V +G
Sbjct: 53 ------RELFGEYVV--RYGRREKFKKTDISVGDVVLI----SKGNPLHSDLLGTVIEIG 100
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
+ +S+ + K +RID + +T++R AL N
Sbjct: 101 SNHVDVSMEV--------VPKWALNDIRIDL---YVNDVTFKRMLNALDKFNSTD----N 145
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAI--ALGLNKKRPL 253
I ++ L G K+ + +E++ + + ++ Q++ + ALG R L
Sbjct: 146 RLIDIILGLDGPKK----------SKKTEIRF---LDYSLNEYQQETVLEALG---ARDL 189
Query: 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV-GLNIVRVGNP 312
+I GPPGTGKT + E+I + V + +V+ TA +N AVDN++ +S IVR+G+P
Sbjct: 190 YLIHGPPGTGKTRTISEVILQEVLRKNKVIATADSNIAVDNILSNISKYESFKIVRIGHP 249
Query: 313 ARISPAVASKSL-GEIVKSKLASFVAEFE---RKKSDLRKDL-------RQCLKDD---- 357
+RIS + SL +I + S + + + +K DLRK R+ + DD
Sbjct: 250 SRISKKLMKYSLQNKITEHPNYSTLKKMKMDLQKNYDLRKSFKRPDPKWRRGMTDDDIII 309
Query: 358 --SLAAGIRQLLKQ-----------------LGKTLKKKEKETVKEVLSSAQVVLATNTG 398
L IR + K+ L + ++K EK+ + +++S++ VV+ATN+
Sbjct: 310 FSKLNKDIRGVPKETIKKMADWVICSENIAKLKENIQKFEKKIIDDIVSASDVVVATNSM 369
Query: 399 AADPLIRRLDTFDL-------------------VGKRCILAGDQCQLAPVILSRKALEGG 439
A ++ FD+ + ++ I+AGD QL P +LS E
Sbjct: 370 AGSDILEDY-KFDVCAIDEGSQSMEPSSLIPIVISRKLIIAGDHKQLPPTVLSD---ELE 425
Query: 440 IGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
+ +L ER + + L QYRMN+ I +++++ Y LI+ +V SH L++
Sbjct: 426 LKKTLFERMINENPD-FSKILQVQYRMNEKIMAFSNEMFYENKLIAHESVKSHNLLE--- 481
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGV 559
+ + ++ + L + +++ EE D S YN EAE V+ V L +
Sbjct: 482 IVENISNEDKYIINEKSLQF--INVDGEEKQD--SFKSSYNVEEAEKVLEIVSKLQKYEI 537
Query: 560 SPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAV 619
S I +PY AQV+++ + L+ ++V ++D FQGRE + ++IS VR++ +
Sbjct: 538 PVSVI---TPYDAQVKYISKMLN----TDKIDVKSVDGFQGRENEVIVISFVRTDKM--- 587
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
GFL D RR+NVA+TRA + + VV + + + ++ L
Sbjct: 588 GFLKDLRRLNVAVTRARRKLIVVGSKNLLIKDDAYSKFL 626
>gi|45359144|ref|NP_988701.1| DNA helicase [Methanococcus maripaludis S2]
gi|45048019|emb|CAF31137.1| putative DNA helicase [Methanococcus maripaludis S2]
Length = 633
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 182/702 (25%), Positives = 314/702 (44%), Gaps = 141/702 (20%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+ + EL++ ERD E+ F +EE+ + T EN GRA L +
Sbjct: 7 YVNKFKELVKKERDHEINFHKEEIKKLGTKRENV------------GRAILNLNGKVIRE 54
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
F G ++V R + + T +S GD+V + S+G S + G V +G
Sbjct: 55 FF--------GEYIV--RYGRSEKFKKTDISVGDIVLI----SKGNPLQSDLLGTVIEIG 100
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
+ +S+ + K +RID + +T++R ML N L K N
Sbjct: 101 SNHVDVSMEI--------VPKWALNDIRIDL---YVNDVTFKR-----ML---NALDKFN 141
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
+ ++ + + ++ + +EV+ + ++ QK+A+ L R L +
Sbjct: 142 STDNRLIDI------ILSVDSPQKSKTTEVRF---LDYRLNEYQKEAVLEAL-AARDLYL 191
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD-VGLNIVRVGNPAR 314
I GPPGTGKT + E+I + + +V+ TA +N AVDN++ +S IVR+G+P+R
Sbjct: 192 IHGPPGTGKTSTISEVILQEALRKNKVIATADSNIAVDNILSNISKHESFKIVRIGHPSR 251
Query: 315 ISPAVASKSLGEIVK-----SKLASFVAEFERKKSDLRKDL-------RQCLKDDSLAA- 361
IS + SL + S L E + K DLRK+ R+ + +D +
Sbjct: 252 ISKKLIKYSLQTKITEHPNYSTLVKLKTELQ-KNYDLRKNFQRPDPKWRRGMSNDDIIIF 310
Query: 362 --------GI-RQLLKQLG-------------KTLKKKEKETVKEVLSSAQVVLATNTGA 399
GI ++ +KQ+ + ++K EK+ + +++S++ VV+ATN+ A
Sbjct: 311 SKLNKDIRGIPKETIKQMADWVICSENIAKTKENVQKFEKKLIDDIISTSDVVVATNSMA 370
Query: 400 ADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
++ FD+ ++ I+AGD QL P +LS E +
Sbjct: 371 GSEILEDY-KFDIAVIDEGSQSTEPSSLIPIVRSRKLIIAGDHKQLPPTVLSD---ELEL 426
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV----D 496
+L ER H + L QYRMN+ I ++++ Y LI+ +V S L+ +
Sbjct: 427 KKTLFERMIQEHPE-FSKILQVQYRMNEKIMEFSNEMFYENKLIAHESVKSQNLLEIVEN 485
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
I + PL ++ G E+ S YN EAE V+ V L
Sbjct: 486 VSNEDKDIINEKPLQFINVD--------GEEKQ---NSFKSSYNVEEAEKVLEIVSKLQK 534
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
+ S I +PY AQV+++ + L+ ++V ++D FQGRE + ++IS VR++ +
Sbjct: 535 YEIPVSVI---TPYDAQVKYISKMLN----TDKIDVKSVDGFQGRENEVIVISFVRTSKM 587
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
GFL D +R+NVA+TRA + + VV + + + ++ L
Sbjct: 588 ---GFLKDLKRLNVAVTRAKRKLIVVGSKNLLIKDDAYSKFL 626
>gi|328353104|emb|CCA39502.1| Regulator of nonsense transcripts 1 [Komagataella pastoris CBS
7435]
Length = 967
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 149/477 (31%), Positives = 220/477 (46%), Gaps = 77/477 (16%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVD 293
+ SQ A+ L ++ L +IQGPPGTGKT I+ A + ++VLVTA +N AVD
Sbjct: 402 LNPSQVNAVKSVLQQR--LSLIQGPPGTGKTVTSATIVYHLAKSKKKKVLVTASSNIAVD 459
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VRV +R + A+ SL +V +
Sbjct: 460 HLASKLEDIGLKVVRVTARSRENVESAIDHLSLSSLVSNT-------------------- 499
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKK-------KEKETVKEVLSSAQVVLATNTGAADPLI 404
++ + + + +LG KK + K+ E+L+ A VV T +GA D +
Sbjct: 500 ----NNPVLKKLLKKKDELGSLSKKDMNIYISQTKKAEAEILAEAHVVCCTCSGAGDKRL 555
Query: 405 RRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
+ F V K+ IL GD QL PVIL A + G+ SL
Sbjct: 556 ANI-KFPYVLIDESTQPSEPESLIPIVKGAKQVILVGDHQQLGPVILHNGAAKAGLRQSL 614
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
ER L G + +L QYRM+ +++ + S Y GSL + + L+ + F P
Sbjct: 615 FERLIKL--GHIPIRLEVQYRMHPSLSEFPSNMFYDGSLQNGVSHEQRLIRRSSFPWPA- 671
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
PLL + YG+ E + ++GT SF N EA + L+ G+ P I
Sbjct: 672 -PGIPLLFWSS---YGT------EEISISGT-SFLNRSEAMNCEKIISRLLSEGIKPHQI 720
Query: 565 AVQSPYVAQVQHLRERL------DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA 618
V +PY Q ++ + L D VEVA++D+FQGRE D +I S RSN
Sbjct: 721 GVITPYQGQRDYIVQYLLMNGAHPDREIYQDVEVASVDAFQGREKDFIIFSCTRSNHTNT 780
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSF 675
+GFL D+RR+NVAITRA + V+ + T+ + RLL H R G + SF
Sbjct: 781 IGFLKDARRLNVAITRAKYGLFVLGNIKTLQKDPLWNRLLVHFRDKGALVEGRLDSF 837
>gi|329961517|ref|ZP_08299598.1| putative DNA helicase [Bacteroides fluxus YIT 12057]
gi|328531729|gb|EGF58558.1| putative DNA helicase [Bacteroides fluxus YIT 12057]
Length = 627
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 144/507 (28%), Positives = 242/507 (47%), Gaps = 77/507 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEV----------KLDGIMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV+ + N L++ ++ +L + + +Q+ A+ L K
Sbjct: 147 TMFEALEDVSRSKGNRLSELRDIMLGTGKPGFRELYPVRFPWLNSTQETAVNKVLCAK-D 205
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+GNP
Sbjct: 206 VAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWISEKLIDRGVNVLRIGNP 265
Query: 313 ARISPAVASKSL-----GEIVKSKLASFVAEFERKKSDLRKDLRQC-----LKDDSLAAG 362
R++ + S + G + ++L S +RK+LR+ + G
Sbjct: 266 TRVNDKMLSFTYERRFEGHPLYTELWS-----------IRKNLRELSGRSRRGNYDEREG 314
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-------- 412
IR + +L E + ++ A V+ +T + L+ R T +
Sbjct: 315 IRNRMSRLRDRATALEIQINADLFDGAHVIASTLVSSNHRLLNGHRFGTLFIDEAAQALE 374
Query: 413 --------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
R +LAGD CQL P I +A GG+ +L+E+ + ++ L QY
Sbjct: 375 AACWIAIRKADRVVLAGDHCQLPPTIKCHEAARGGLERTLMEKVVSSKPSTVSL-LKVQY 433
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM++ I ++S+ Y G L ++ V ++D W P+ +DT +
Sbjct: 434 RMHEDIMKFSSQWFYNGELEAAPEVRCRGILD-------W--DSPISWIDTS------DM 478
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI------AVQSPYVAQVQHLR 578
+E + T N+ EA +++ + S I S + + SPY AQVQ+LR
Sbjct: 479 DFKEEF-VGETFGRINKDEANLLLQELKSYITRIGSNRILEERIDFGIISPYRAQVQYLR 537
Query: 579 ERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITR
Sbjct: 538 NKIKTDASLKPYRSLLTVNTVDGFQGQERDVIFISLVRANEEGQIGFLNDLRRMNVAITR 597
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHI 661
A + ++ +++T+ H++F +L+ +I
Sbjct: 598 ARMKLVILGEAATLSHHSFYRKLMEYI 624
>gi|298385061|ref|ZP_06994620.1| DNA helicase [Bacteroides sp. 1_1_14]
gi|298262205|gb|EFI05070.1| DNA helicase [Bacteroides sp. 1_1_14]
Length = 651
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 220/456 (48%), Gaps = 78/456 (17%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 225 RDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 284
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA 360
NP R V K+ SF E FE S +RK +R+ ++ S +
Sbjct: 285 NPTR-------------VNDKMLSFTYERRFENHPSYPELWGIRKSIREMGSRMRRGSYS 331
Query: 361 A--GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL---- 412
G+R + +L + E ++ SA+V+ +T + L+ RR T +
Sbjct: 332 EREGMRSRMSRLRDRATELEILINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAA 391
Query: 413 ------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
R ILAGD CQL P I +A GG+ +L+E+ ++ L
Sbjct: 392 QALEAACWIAIRKADRVILAGDHCQLPPTIKCIEAARGGLDHTLMEKVVQQKPSAVSL-L 450
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLP 518
QYRM++AI + S+ Y G L ++ V + L DTP WI +
Sbjct: 451 KVQYRMHEAIMRFPSEWFYNGELEAAPEVRNRGILDFDTPM---NWIDTSEM-------- 499
Query: 519 YGSLSLGCEEHLDLAGTGSF--YNEGEAEIVVHHVFSLIC----AGVSPSAI--AVQSPY 570
+ H + G SF N+ EA +++ + + I A + +I + SPY
Sbjct: 500 --------DFHEEFVGE-SFGRINKQEANLLLQELEAYISRIGKARILDESIDFGLISPY 550
Query: 571 VAQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
AQVQ+LR ++ P + + V T+D FQG+E D V IS+VR+N G +GFL D R
Sbjct: 551 KAQVQYLRSKIRGSSFLRPFRSLITVNTVDGFQGQERDVVFISLVRANEDGQIGFLNDLR 610
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RMNVAITRA + ++ D++T+ + F +L+ +I+
Sbjct: 611 RMNVAITRARMKLVILGDATTLTKHAFYRKLITYIK 646
>gi|169614636|ref|XP_001800734.1| hypothetical protein SNOG_10464 [Phaeosphaeria nodorum SN15]
gi|160702789|gb|EAT81858.2| hypothetical protein SNOG_10464 [Phaeosphaeria nodorum SN15]
Length = 682
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 193/635 (30%), Positives = 293/635 (46%), Gaps = 108/635 (17%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG-------NHRLPPTTLSPGDMVCVRVCDSRGACAT 124
I NL V S TGLGG +V ++ +P + GD+V V+ S A
Sbjct: 48 ILNLNVSSIRTGLGGKTVVELGLDSAVVAKGDKPDIPEHGIRVGDIVGVQEQPSGSAKKA 107
Query: 125 SCIQGFVHNLGEDGC-------TISVALESRHGD-PTFSKLFGKSVRIDRIQGLADTLTY 176
+G G +G + V L+ G+ P+ KL+ + R++ LA+ +TY
Sbjct: 108 EKREGA--KKGAEGVVLKVRRENVEVVLDKEDGEVPSAGKLWMGADVCVRVK-LANDVTY 164
Query: 177 ERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV--KLDGIMGKT 234
+R + + LQK + P + LFG DL D S KL+ +
Sbjct: 165 KRMNQTMTRLQKFSDQEYTPFMR---VLFGQASPTPL--PPDLNDPSNPLHKLE-WNDPS 218
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+DSQ++AI L R + +I GPPGTGKT L E+I + ++Q R+LV P+N +VDN
Sbjct: 219 LNDSQQEAIRFAL-ASREVALIHGPPGTGKTHTLIELILQLLKQKLRLLVCGPSNISVDN 277
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+VE+L+ + +VR+G+PAR+ P+V + SL + ++ A+ + + RK+ D D + +
Sbjct: 278 IVERLASHKVPMVRLGHPARLLPSVLNHSLDVLTRTSEAAALVQDVRKEMD---DKQNSI 334
Query: 355 KDDSLAAGIRQL---LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ A RQ+ LK+L K +++E+ V ++S ++VVLAT GA ++ + FD
Sbjct: 335 RKTRNAKERRQVYTELKELRKEYRERERGCVNNLVSGSKVVLATLHGAGGFHLKGQE-FD 393
Query: 412 LV---------------------GKRCILAGDQCQLAPVILS------------------ 432
+V + +LAGD QL P I S
Sbjct: 394 VVIVDEASQALEAQCWVPLLWVKANKLVLAGDHLQLPPTIKSLNSKESKAAKSKKTEEGA 453
Query: 433 ------RKALEG-GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLIS 485
K + G + +L +R LH + LTTQYRM++ I + S E+Y L++
Sbjct: 454 KNAEAPAKPVNGMTLETTLFDRLLALHGPSIKRMLTTQYRMHEKIMRFPSDELYESKLVA 513
Query: 486 SSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT------GSF 538
+ V LL P+ VK T TQ PL+ DT+ G E+ G+ S
Sbjct: 514 ADFVKDRLLNGLPYDVKDTEDTQEPLVFWDTQ--GGDFPEKTEDDAVTKGSKGMSLGDSK 571
Query: 539 YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSF 598
NE EA +V HV LI AGV IAV +PY AQVQ + ++D F
Sbjct: 572 SNEAEAALVKLHVNHLIEAGVKAEDIAVVTPYNAQVQ----------------LGSVDGF 615
Query: 599 QGREADAVIISM-VRSNTLGAVGFLGDSRRMNVAI 632
QGRE +AVI R+ LG V D+ NV +
Sbjct: 616 QGREKEAVITWYPSRTTPLGTVA--QDAMHANVHL 648
>gi|410099466|ref|ZP_11294437.1| hypothetical protein HMPREF1076_03615 [Parabacteroides goldsteinii
CL02T12C30]
gi|409218937|gb|EKN11903.1| hypothetical protein HMPREF1076_03615 [Parabacteroides goldsteinii
CL02T12C30]
Length = 647
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 147/493 (29%), Positives = 235/493 (47%), Gaps = 99/493 (20%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
+ +Q++A+ L+ K + I+ GPPGTGKT L E I + + +V+V A +N AVD +
Sbjct: 191 NTTQEEAVNHVLSAKE-VSIVHGPPGTGKTTTLVEAIYETLHRENQVMVCAQSNTAVDWI 249
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
EKL D G+N++R+GNP R V K+ SF +ER+ +
Sbjct: 250 SEKLVDRGINVLRIGNPTR-------------VNDKMLSFT--YERRF--------ESHP 286
Query: 356 DDSLAAGIRQLLKQLGKTLKKK---EKETVK-------------------EVLSSAQVVL 393
D S GIR+ ++++ + +KK EK+T + ++ S A+V+
Sbjct: 287 DYSELWGIRKAIREIQSSFRKKSHSEKDTARNRLSRLRFRATELEVQIDADLFSEARVIA 346
Query: 394 ATNTGAADPLIRRLDTFDLV------------------GKRCILAGDQCQLAPVILSRKA 435
T G+A+ ++ + L R ILAGD QL P I +A
Sbjct: 347 CTLVGSANRVLTNHNFTTLFIDEAAQALEAACWIAISKADRVILAGDHHQLPPTIKCIEA 406
Query: 436 LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--L 493
GG+ +L+++ A ++ L QYRM++ I ++S+ Y L ++ V L
Sbjct: 407 TRGGLDRTLMQKVAAGKPETVSL-LKVQYRMHEDIMRFSSRWFYQDELQAAPEVKYRGIL 465
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVF 552
DTP V W DT C+ E L+ + S N+ EAE++V +
Sbjct: 466 AYDTPVV---W--------FDT--------ADCDFEEDQLSESQSRINKKEAELLVEQLQ 506
Query: 553 SLICAGVSPSAI-------AVQSPYVAQVQHLRERLDD----LPEAAGVEVATIDSFQGR 601
+ I +S + + SPY +QVQ++R + P + V T+D FQG+
Sbjct: 507 AYI-EKISKERVLDESIDFGLISPYKSQVQYIRGLIKRNSFFKPFRKLITVHTVDGFQGQ 565
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
E D ++IS+VR+N G +GFL D RRMNVAITRA + ++ D+ST+ +TF L ++I
Sbjct: 566 ERDVIMISLVRANDQGNIGFLNDLRRMNVAITRARMKLIILGDASTLTKHTFYRELYKYI 625
Query: 662 RYFGRVKHAEPGS 674
G V +P +
Sbjct: 626 TANGHVIPLKPAT 638
>gi|261402463|ref|YP_003246687.1| DNA helicase [Methanocaldococcus vulcanius M7]
gi|261369456|gb|ACX72205.1| DNA helicase [Methanocaldococcus vulcanius M7]
Length = 651
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 191/706 (27%), Positives = 324/706 (45%), Gaps = 131/706 (18%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+D + ++ +L+ IER E++F + E+ + EN GRA I
Sbjct: 4 IDLYVKKFKDLIEIERRCEMDFHKNEIIRLGKKRENV------------GRA-------I 44
Query: 73 CNLFVVSTSTGLG---GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
NL LG G LV F G + T +SPGD+V + SR S +
Sbjct: 45 LNL----KGKFLGESLGCTLVRF---GRKKPFKTEISPGDVVLI----SREDPLKSDLYA 93
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
V ++G++ I VA + P + ++ VRID + +T++R EAL K
Sbjct: 94 NVISVGKN--FIDVAFD--EDVPKW--VYKDRVRID---LYVNDITFKRMKEALREFAK- 143
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
++N I ++ L E + ++K+ +DSQK A+ +
Sbjct: 144 ---RKNKLIYIILGL----------ERPEKPLREDIKI-KFYDDKLNDSQKLAVKRAVLS 189
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDV--GLNI 306
K L +I GPPGTGKT L E+I + V +VL TA +N A DN++E L L +
Sbjct: 190 K-DLYLIHGPPGTGKTRTLTEVIVQEVNFNKHKVLATADSNTAADNILEYLVKKYPDLKV 248
Query: 307 VRVGNPARISPAVASKSLGEIVKS-----KLASFVAEFERKKSDLRKDL------RQCLK 355
VRVG+P RIS + SL ++++ ++ S ++ K + K L R+ +
Sbjct: 249 VRVGHPTRISKDLIEHSLPYLIENHEKYQEVLSLKERIKQIKEERDKFLKPSPRWRRGMS 308
Query: 356 DD---------------------SLAAGI--RQLLKQLGKTLKKKEKETVKEVLSSAQVV 392
D+ S+A I + ++++ + L ++ + E+LS A VV
Sbjct: 309 DEQILKISKKKKSYRGIPKEKIISMAEWITKNKKIQKIIRNLDDLTEKIINEILSEADVV 368
Query: 393 LATNTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSR 433
++TN+ A +++ + FD+V G + I+AGD QL P +LS
Sbjct: 369 VSTNSMAGSDVLKDWE-FDVVVIDEGSQAMEPSCLIPIVKGNKLIMAGDHKQLPPTVLSE 427
Query: 434 KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHL 493
+ +L ER + ++ L QYRMN+ I + ++ Y L + +V +
Sbjct: 428 NK---ELKKTLFERLIKKYPD-FSSILEIQYRMNEKIMEFPNRMFYDNKLKADESVKNIT 483
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFS 553
L+D VK I + +++ ++P +++ +E D + S+YN EAE V V
Sbjct: 484 LLD--LVKEEEIEETDKSIVN-KIPVQFINVEGKERRD-KESYSYYNIEEAEQVFDIVKK 539
Query: 554 LICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRS 613
L+ + I+V +PY AQV++LR ++ VEV T+D FQGRE + ++IS VR+
Sbjct: 540 LLKYRI---PISVITPYDAQVRYLRSMFEE--NNIDVEVNTVDGFQGRENETIVISFVRT 594
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
GFL D RR+NVAITR + + ++ + + + + +++
Sbjct: 595 EKF---GFLKDLRRLNVAITRPKRKLVLIGNENLLKQDKIYNEMIK 637
>gi|403178280|ref|XP_003336719.2| hypothetical protein PGTG_17974 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164088|gb|EFP92300.2| hypothetical protein PGTG_17974 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1131
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 136/438 (31%), Positives = 206/438 (47%), Gaps = 61/438 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL ++QGPPGTGKT ++ + +VLV AP+N AVD + EK+ GL +VR
Sbjct: 493 QKPLSLVQGPPGTGKTVTSASVVYHLSKMNPGQVLVCAPSNVAVDQLTEKIHLTGLKVVR 552
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V +R E + S + + +D DL++ ++ L A +L
Sbjct: 553 VQAKSR-----------EAIDSSVQYLTLHQQVANNDTHPDLQKLIQ---LKAEQGELSS 598
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-------------------T 409
+ K + +E+L++A V+L T GA DP + ++
Sbjct: 599 TDERRYKSLTRLCEREILTNADVILCTCVGAGDPRLAKMKFRTVLIDEATQATEPECMIP 658
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
L K+ + GD QL P I+++KA G+ S+ ER L G +L QYRM+
Sbjct: 659 LTLGVKQVVFVGDHQQLGPTIMNKKAARAGLTQSMFERLVLL--GNRPIRLQVQYRMHPC 716
Query: 470 IASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
++ + S Y GSL + T + VD P+ +PT P+ +LG E
Sbjct: 717 LSEFPSNMFYEGSLQNGVTAPERIKKNVDFPWPQPT----TPMCF--------HCNLGQE 764
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD----- 582
E + +GT SF N EA V V AGV PS I + +PY Q ++ +
Sbjct: 765 E-ISSSGT-SFLNRTEASNVEKVVTRFFKAGVLPSQIGIVTPYEGQRSYIVTYMQTNGTL 822
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
DL +EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA V
Sbjct: 823 KKDL--YKDIEVASVDAFQGREKDYIILSCVRSNDHQGIGFLNDPRRLNVALTRAKYGVV 880
Query: 641 VVCDSSTICHNTFLARLL 658
V+ + + + LL
Sbjct: 881 VLGNPKVLSKHALWHFLL 898
>gi|15668275|ref|NP_247068.1| DNA-binding protein [Methanocaldococcus jannaschii DSM 2661]
gi|2498043|sp|Q57568.1|Y104_METJA RecName: Full=Uncharacterized ATP-dependent helicase MJ0104
gi|1590880|gb|AAB98084.1| DNA-binding protein, probably DNA helicase [Methanocaldococcus
jannaschii DSM 2661]
Length = 663
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 183/703 (26%), Positives = 325/703 (46%), Gaps = 125/703 (17%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+D + ++ +L+ IER E++F + E+ + EN GRA I
Sbjct: 14 VDLYVKKFMDLIEIERRCEMDFHKNEIIKLGKKRENV------------GRA-------I 54
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL LG +V F G + T +SPGD+V V S+ S + V
Sbjct: 55 LNLKGKFLGESLGCT-IVRF---GRKKPFKTEISPGDVVLV----SKENPLQSDLYANVI 106
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
+G++ ++ ++ P + ++ + VR+D + +T++R EAL
Sbjct: 107 YVGKNFIDVAFDVDV----PKW--VYKERVRVDL---YVNDITFKRMKEAL-----REFA 152
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
++ +A ++ G + L E+ +KL+ K ++SQK A+ + R
Sbjct: 153 RKRDKLAYII--LGIEHPEKPLRED-------IKLE-FYDKNLNESQKLAVKKAV-LSRD 201
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKL--SDVGLNIVRV 309
L +I GPPGTGKT + E+I + V+ +VL TA +N A DN++E L L +VRV
Sbjct: 202 LYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNIAADNILEYLIKKYPDLKVVRV 261
Query: 310 GNPARISPAVASKSLGEIVKSK--------LASFVAEFERKKSDLRK---DLRQCLKDD- 357
G+P RIS + SL ++++ L + E + ++ K R+ + D+
Sbjct: 262 GHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIKEQRDKFLKPSPRWRRGMSDEQ 321
Query: 358 --------------------SLAAGI--RQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT 395
S+A I + +K++ L + ++ + E+L+ A V++AT
Sbjct: 322 ILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNLDEITEKIMNEILAEADVIVAT 381
Query: 396 NTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKAL 436
N+ A +++ + FD++ G++ I+AGD QL P +LS
Sbjct: 382 NSMAGSEILKGWE-FDVIVIDEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTVLSENE- 439
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ +L ER + ++ L QYRMN+ I + +K Y L + +V + L+D
Sbjct: 440 --ELKKTLFERLIKKYPE-FSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLD 496
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
VK I + +++ +P +++ E D + S+YN EAE V+ V L+
Sbjct: 497 --LVKEEEIDEVDRDIINE-IPVQFINVEGIERKD-KESPSYYNIEEAEKVLEIVKKLVK 552
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
+ + I +PY AQV++LR ++ +EV T+D FQGRE +A++IS VR+
Sbjct: 553 YKIPTNVI---TPYDAQVRYLRRLFEE--HNIDIEVNTVDGFQGRENEAIVISFVRTKNF 607
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
GFL D RR+NVAITRA + + ++ + + + + +++
Sbjct: 608 ---GFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIK 647
>gi|326436499|gb|EGD82069.1| ATP-dependent helicase NAM7 [Salpingoeca sp. ATCC 50818]
Length = 1192
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 217/452 (48%), Gaps = 47/452 (10%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+ SQ AI L ++PL +IQGPPGTGKT ++ VQQ +VLV AP+N AV++
Sbjct: 589 LNHSQLNAIRTVL--QQPLSLIQGPPGTGKTVTSATLVYHLVQQRGQVLVCAPSNIAVEH 646
Query: 295 MVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
+ +++ G+ +VRV R + + SL V++ S K +L +
Sbjct: 647 LAQRIHLTGVKVVRVAAKTREQLEGDASFLSLHNQVENYTGSSKFTKLTKLKKELGELSE 706
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETV--------KEVLSSA---QVVLATNTGAAD 401
D+ + R+L K++ +K + +++ V++ T A +
Sbjct: 707 A--DERM---YRRLYKKIEDIFLRKADVICCTCAGGGDRRIVAGKPYRTVLVDEATQATE 761
Query: 402 PLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLT 461
P I L L + IL GD CQL PV++ +KA G+ SL ER GV +L
Sbjct: 762 PEI--LIPLVLGANQVILVGDHCQLGPVVMCKKAANAGLAHSLFERLVV--HGVRPVRLQ 817
Query: 462 TQYRMNDAIASWASKEMYGGSLISSSTVAS--HLLVDTPFVKPTWITQCPLLLLDTRLPY 519
QYRM+ A++ + S Y GSL + T A VD P+ P + P+L
Sbjct: 818 VQYRMHPALSEFPSNTFYEGSLQNGVTAAEREQPAVDFPWPNP----EVPMLFY------ 867
Query: 520 GSLSLGCEEHLDLAGTGSFY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
S+G EE +A +GS Y N EA V V + AG++P I + +PY Q H+
Sbjct: 868 --ASMGREE---MAASGSSYLNRTEAANVEKIVTRFMRAGITPDQIGIITPYEGQRAHIV 922
Query: 579 ERLDDLPEA-----AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAIT 633
+ ++ A +EVA++DSFQGRE D +I+S RSN +GFL D RR+NVA+T
Sbjct: 923 QYMNFHGAARRSFYEALEVASVDSFQGREKDYIILSCTRSNDHQGIGFLNDPRRLNVALT 982
Query: 634 RACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RA + +V + + LL H + G
Sbjct: 983 RAKYGLILVGNPRALSKQALWHNLLLHFKEQG 1014
>gi|62087184|dbj|BAD92039.1| immunoglobulin mu binding protein 2 variant [Homo sapiens]
Length = 629
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 138/237 (58%), Gaps = 19/237 (8%)
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
G+ +SL+ER A + + LT QYRM+ AI WAS MY G L + S+VA HLL D P
Sbjct: 53 GLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLP 112
Query: 499 FVKPTWITQCPLLLLDTRLPYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSL 554
V T T PLLL+DT GC E D G N GE +V H+ +L
Sbjct: 113 GVAATEETGVPLLLVDT--------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQAL 161
Query: 555 ICAGVSPSAIAVQSPYVAQVQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRS 613
+ AGV IAV SPY QV LR+ L PE +E+ ++D FQGRE +AVI+S VRS
Sbjct: 162 VDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRS 218
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
N G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 219 NRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 275
>gi|291243686|ref|XP_002741733.1| PREDICTED: regulator of nonsense transcripts 1-like, partial
[Saccoglossus kowalevskii]
Length = 974
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/443 (30%), Positives = 211/443 (47%), Gaps = 63/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT ++ +Q +VLV AP+N AVD + EK+ GL +VR
Sbjct: 330 QRPLSLIQGPPGTGKTVTSATVVYHLSKQNLGQVLVCAPSNIAVDQLTEKIHRTGLKVVR 389
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + + D +L+ Q LKD++ +L
Sbjct: 390 LCAKSR-----------EAIDSPVSFLALHNQVRNMDAIPELQKLQQLKDET-----GEL 433
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
K + ++ +E+L +A V+ T GA DP + R ++
Sbjct: 434 SSADEKRYRSLKRNCERELLQNADVLCCTCVGAGDPRLARFRFRSILIDESTQATEPECM 493
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 494 IPAVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPIRLQVQYRMH 551
Query: 468 DAIASWASKEMYGGSLISSSTVA--SHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
++S+ S Y GSL + T S+ +D P+ + T P+L T G
Sbjct: 552 PILSSFPSNIFYEGSLQNGVTPGERSNKSLDFPWPQ----TDKPMLFYAT--------TG 599
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQHLRER 580
EE +A +G S+ N EA V + G+ P I + +PY Q VQ+++
Sbjct: 600 QEE---IASSGTSYLNRTEAANVEKITTRFLRCGIRPEQIGIITPYEGQRSFIVQYMQHN 656
Query: 581 LDDLPE-AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+ +E+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TR +
Sbjct: 657 GSLHAKLYQEIEIASVDAFQGREKDYIILSCVRANEHQGIGFLNDPRRLNVALTRCKFGI 716
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + LL H +
Sbjct: 717 IIVGNPKVLSKQALWNHLLNHYK 739
>gi|325280121|ref|YP_004252663.1| helicase [Odoribacter splanchnicus DSM 20712]
gi|324311930|gb|ADY32483.1| putative helicase [Odoribacter splanchnicus DSM 20712]
Length = 627
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 224/463 (48%), Gaps = 63/463 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+ SQ+KA+ L K + ++ GPPGTGKT L E + + + +V+V+A +N AVD
Sbjct: 188 LNASQEKAVNQVLCAKE-VAVVHGPPGTGKTTTLVEAVYETLHRENQVMVSAQSNTAVDW 246
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK---DLR 351
+ EKL D G+ ++R+GNP R++ + + + + + S E + + +R+ LR
Sbjct: 247 IAEKLVDRGIPVLRIGNPTRVNDKMLAFTYER--RFEAHSDYPELWQIRKTIREMTGRLR 304
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVK---EVLSSAQVVLATNTGAADPLIRRLD 408
+ ++D +L QL K + ++ E+ + A+V+ T GAA ++ R
Sbjct: 305 KSGREDR-----ERLHNQLTKLRVRATGLEIRIDTELFTEARVIACTLVGAASRVLERKR 359
Query: 409 TFDLV------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
L R ILAGD CQL P I +A GG+G +LLE+
Sbjct: 360 FSSLFIDEAAQAIEAACWIAISRADRVILAGDHCQLPPTIKCIEAARGGLGRTLLEKV-V 418
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQC 508
LH+ + L QYRM++ I + S+ Y L ++ V L DTP +WI
Sbjct: 419 LHKPETVSLLKIQYRMHEDIMRFPSRWFYHDELEAAPEVKYRGILDFDTPV---SWI--- 472
Query: 509 PLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI-CAGV-----SPS 562
DT L +E GTG N GEAE++V + + + G+
Sbjct: 473 -----DTS------ELDLQEKAVAEGTGRL-NTGEAELLVRELKNYMERIGIRRILEEHI 520
Query: 563 AIAVQSPYVAQVQHLRERLDDLPEAAG----VEVATIDSFQGREADAVIISMVRSNTLGA 618
V SPY AQV +LR L P + V T+D FQG+E D ++IS+VR+N G
Sbjct: 521 DFGVISPYRAQVHYLRHLLKKEPFFRPCRRLITVHTVDGFQGQERDVIMISLVRANEKGQ 580
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+GFL D RRMNVAITRA + ++ ++ T+ + F L +I
Sbjct: 581 IGFLRDLRRMNVAITRARMKLLILGEAVTLTRHPFYRELYEYI 623
>gi|169852646|ref|XP_001833005.1| ATP dependent helicase [Coprinopsis cinerea okayama7#130]
gi|116505799|gb|EAU88694.1| ATP dependent helicase [Coprinopsis cinerea okayama7#130]
Length = 1079
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 140/455 (30%), Positives = 212/455 (46%), Gaps = 59/455 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + +VLV AP+N AVD
Sbjct: 444 LNHSQMYAVKSVLQK--PLSLIQGPPGTGKTVTSASIVYHLAKMNPGQVLVCAPSNVAVD 501
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R E + S + + S +L++
Sbjct: 502 QLTEKIHATGLKVVRLTAKSR-----------EALDSSVNFLTLHQQVANSTTHIELQKL 550
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD----- 408
++ + + ++ KTL + + KE+L +A V+ T GA DP + +L
Sbjct: 551 IQLKNEQGELSSNDERKYKTLIR---QCEKEILGAADVICCTCVGAGDPRLSKLRFRTVL 607
Query: 409 --------------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
L K+ ++ GD QL PVI+++KA G+ SL ER L G
Sbjct: 608 IDEATQAAEPECMIPLVLGCKQVVMVGDHQQLGPVIMNKKAARAGLTQSLFERLVLL--G 665
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ + S Y GSL + T L + F P + P+
Sbjct: 666 NRPIRLQVQYRMHPCLSEFPSNMFYEGSLQNGVTAPERLRKNVDFPWP--VPDTPMFFYQ 723
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT SF N EA V V +GV P+ I V +PY Q
Sbjct: 724 --------NLGQEE-ISSSGT-SFLNRTEASNVEKIVTKFFKSGVVPNQIGVVTPYEGQR 773
Query: 575 QHLRERLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
++ + DL + +EVA++D+FQGRE D +I+S VRSN +GFL D RR
Sbjct: 774 SYIVNYMQFNGSLKKDLYKE--IEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRR 831
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+NVA+TRA V ++ + + + LL H +
Sbjct: 832 LNVALTRAKYGVVILGNPKVLSKHPLWHYLLTHYK 866
>gi|407039213|gb|EKE39508.1| regulator of nonsense transcripts, putative [Entamoeba nuttalli
P19]
Length = 937
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/465 (29%), Positives = 224/465 (48%), Gaps = 60/465 (12%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+ L +IQGPPGTGKT I+ VQ G++VLV AP+N AVD + K+++ G+ ++R
Sbjct: 416 KQLSLIQGPPGTGKTVTSATIVYHVVQSNPGKKVLVCAPSNIAVDQLGTKITETGVKVIR 475
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V + +R + +SL + L + + E +K ++ L Q KDD + I
Sbjct: 476 VYSKSR---EIEDESLYDY---SLKTLMEEQLKKDKEMFA-LYQEYKDDPDSLDIVS--- 525
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP----LIRRLDT--------------- 409
T++K+ E +L V+ T GA D ++ +DT
Sbjct: 526 --KTTIQKRINEIELSLLRETDVICCTCCGALDSRLSGILEHIDTVLIDESTQADEPECL 583
Query: 410 --FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
+ K+ L GD CQL P++ S +A + G+G+ + R L G +L QYRM+
Sbjct: 584 ICLNNSVKQLFLVGDHCQLGPILNSPRAKKNGLGLPMFSRLLQL--GHEPYRLQFQYRMH 641
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC-PLLLL--DTRLPYGSLSL 524
++ ++S+ Y G L + T P +K W Q P++ + + + YGS
Sbjct: 642 PCLSEFSSQTFYDGVLQNGVTALERQF---PSLKYFWFKQNKPMMFIAANGKESYGS--- 695
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
GT S+ N+ E ++ + ++ VSPS I V +PY+AQ Q + RL
Sbjct: 696 --------NGT-SYLNDEEVFLIEQIIIKMLGNKVSPSQIGVITPYIAQKQAIISRLSLN 746
Query: 583 -DLPEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
+ EA +E+A++DSFQGRE D +I S VRSN + +GFL +R+NV+ITRA +
Sbjct: 747 RRISEAQLNDIEIASVDSFQGREKDFIIFSTVRSNEISDIGFLSIPQRLNVSITRAKYGL 806
Query: 640 AVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDP 684
VV + T+ N L+ + + H + + + ++P
Sbjct: 807 VVVGNPETLMQNPLWCAYLQFFQNNNVLVHGQLENLKEYPIKLEP 851
>gi|237838453|ref|XP_002368524.1| regulator of nonsense transcripts UPF1, putative [Toxoplasma gondii
ME49]
gi|211966188|gb|EEB01384.1| regulator of nonsense transcripts UPF1, putative [Toxoplasma gondii
ME49]
Length = 1449
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 156/489 (31%), Positives = 231/489 (47%), Gaps = 106/489 (21%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKT----GLLKEII--------------ARAV 276
+ SQ AI L + PL +IQGPPGTGKT L+ +++ R
Sbjct: 602 LNPSQMLAIRYAL--QHPLSLIQGPPGTGKTLTCSTLVYQMVKLSEVGSHIHPRCAGRVN 659
Query: 277 QQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV 336
++G +VLV AP+N AVD + E+++ GL ++R+ + +R E S L SF
Sbjct: 660 KEGGQVLVVAPSNVAVDQLAERINRTGLKVIRMYSKSR-----------EGASSSLTSFC 708
Query: 337 AE---FERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKE-------TVKEVL 386
E +K +L+ D +A I QL +Q G+ E+ E+L
Sbjct: 709 VENLALHKKVLELKTG-----SSDEMAKYI-QLKEQTGELAAADERRLRLLISRAEMEIL 762
Query: 387 SSAQVVLATNTGAADPLIRRLDTFD----------------------LVGKRCILAGDQC 424
+A V+ T GA D RL F L K+ +L GD C
Sbjct: 763 QTADVICTTCVGAGD---NRLQGFRFRQVVIDEAAQATEPECLIPIVLGAKQVVLIGDHC 819
Query: 425 QLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI 484
QL PV+LS+KA G+ SL R L G +L QYRM+ A++ + S Y G L
Sbjct: 820 QLGPVVLSKKAAAAGLATSLFSRLLAL--GHRPLRLKVQYRMHPALSFFPSYFFYEGELQ 877
Query: 485 SSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGS--------LSLGCEEHLDLAGTG 536
+ T+ T+ Q P D R P+ + S EE ++G+G
Sbjct: 878 NGVTMTER----------TYFHQGPG---DHRFPWPNEERPMFFYHSTASEE---ISGSG 921
Query: 537 SFY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---LRERLDDLPEAA--GV 590
+ Y N EA + V L+ G+ S I V +PY Q H L +R L +AA +
Sbjct: 922 TSYVNRVEASNIEKIVTFLLKCGLKASQIGVITPYDGQRAHISSLFQRQTTLGQAAFADL 981
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
EVA++D+FQGRE D +++S VRSN+ +GFL DSRR+NVA+TRA K+ ++C ++T+
Sbjct: 982 EVASVDAFQGREKDFILLSCVRSNSNTGIGFLADSRRLNVAMTRA-KYGLIICGNATVLA 1040
Query: 651 NTFLARLLR 659
N ++ R+ R
Sbjct: 1041 N-YMPRVAR 1048
>gi|440295047|gb|ELP87976.1| nonsense-mediated mRNA decay protein, putative [Entamoeba invadens
IP1]
Length = 943
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/430 (31%), Positives = 212/430 (49%), Gaps = 42/430 (9%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
L +IQGPPGTGKT II AV G++VLV AP+N AVD + K+ D G+ ++RV
Sbjct: 423 LSLIQGPPGTGKTVTSATIIYHAVHSNPGKKVLVCAPSNIAVDQLAAKIVDTGVKVIRVF 482
Query: 311 NPARISP--AVASKSLGEIVKSKLASFV-AEFERKKSDLRKDLRQCLKDD--SLAAGIRQ 365
R S + SLG+IV +A E K R++ + + D S+ A IR
Sbjct: 483 GKGRESENEPLYDYSLGKIVDDVMAQMKDKETLEKYKAFREEPEELAEADKNSILAVIRD 542
Query: 366 LLKQLGKTLK----------KKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGK 415
+ ++ + + + + + V++ +T A +P + L F +
Sbjct: 543 IELKVFRECDVICCTCCVAGDRRLFGINNQIDT--VLVDESTQAEEPEV--LVCFMNSVR 598
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
+ L GD CQL PV+ S+ A + G+G+ + R L G +L QYRM+ A++ ++S
Sbjct: 599 QIFLVGDHCQLGPVLNSKDARKYGLGLPMFSRLLQL--GHEPYRLQFQYRMHPALSEFSS 656
Query: 476 KEMYGGSLISSSTVASHLLVDTPFVKPTWITQC-PLLLLDTRLPYGSLSLGCEEHLDLAG 534
Y G L + T +K W Q P++ + T G S G +
Sbjct: 657 HTFYDGVLQNGVTALERQFNS---LKRFWFVQNRPMMFVATA---GKESFG-------ST 703
Query: 535 TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA-----G 589
S+ N+ E ++ + +I GVSP I V +PY+AQ Q +R RL E
Sbjct: 704 ATSYLNDEEVTVIRDIIVKMIDCGVSPEQIGVITPYIAQKQAIRVRLTKDTELGVNVMNA 763
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC 649
+E+A++DSFQGRE D +I S VRSN+ +GFL + +R+NV+ITRA + VV + ST+
Sbjct: 764 IEIASVDSFQGREKDFIIFSTVRSNSTNEIGFLKNPQRLNVSITRAKYGLVVVGNPSTLS 823
Query: 650 HNTFLARLLR 659
+ + L+
Sbjct: 824 SDPLWSLYLQ 833
>gi|218261116|ref|ZP_03476067.1| hypothetical protein PRABACTJOHN_01731 [Parabacteroides johnsonii
DSM 18315]
gi|218224216|gb|EEC96866.1| hypothetical protein PRABACTJOHN_01731 [Parabacteroides johnsonii
DSM 18315]
Length = 638
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 229/479 (47%), Gaps = 89/479 (18%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ++A+ L K + I+ GPPGTGKT L E I + + +V+V A +N AVD + E
Sbjct: 193 SQEEAVNHVLAAK-DVSIVHGPPGTGKTTTLVEAIYETLHRENQVMVCAQSNTAVDWISE 251
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
KL D G++++R+GNP R V K+ SF +ER+ + D
Sbjct: 252 KLVDRGIHVLRIGNPTR-------------VNDKMLSFT--YERRF--------ESHPDY 288
Query: 358 SLAAGIRQLLKQLGKTLKKK---EKETVK-------------------EVLSSAQVVLAT 395
+ GIR+ ++++ L++K EKET + E+ A+VV T
Sbjct: 289 AELWGIRKAIREIQSNLRRKSHSEKETGRNRLSRLRFRATELEVKIDTELFDEARVVACT 348
Query: 396 NTGAADPLI--RRLDTFDL--------------VGK--RCILAGDQCQLAPVILSRKALE 437
G+A+ ++ R T + +GK R ILAGD QL P I +A
Sbjct: 349 LVGSANRVLTNRNFTTLFIDEAAQALEAACWIAIGKADRVILAGDHHQLPPTIKCIEAAR 408
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLV 495
GG+ +L+++ T + + L TQYRMN++I + S+ Y L S+ V L
Sbjct: 409 GGLDHTLMQKI-TDRKPETVSLLKTQYRMNESIMRFPSRWFYRDELQSAPEVKHRGILEF 467
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNE--GEAEIVVHHV-F 552
DTP V W+ + +L + +E L T Y E G+ ++ + F
Sbjct: 468 DTPVV---WLDTADCHFEEDQLTDSMSRINKDEATLLVSTLQKYIEKIGKERVLDESIDF 524
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLR----ERLDDLPEAAGVEVATIDSFQGREADAVII 608
LI SPY +QVQ++R + P + V T+D FQG+E D ++I
Sbjct: 525 GLI------------SPYKSQVQYIRGLVKRNVFFKPFRRLITVHTVDGFQGQERDVIMI 572
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
S+VR+N G +GFLGD RRMNVAITRA + ++ D+ T+ + F L +IR G+V
Sbjct: 573 SLVRANDKGRIGFLGDLRRMNVAITRARMKLMILGDAPTLTRHAFYKELYEYIRENGQV 631
>gi|341881801|gb|EGT37736.1| hypothetical protein CAEBREN_04117 [Caenorhabditis brenneri]
Length = 1054
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 224/461 (48%), Gaps = 72/461 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ +A+ L RPL +IQGPPGTGKT + I+ V++ E VLV +P+N AVD
Sbjct: 440 LNSSQMQAVKQVLT--RPLSLIQGPPGTGKTVVSATIVYHLVKKTEGNVLVCSPSNIAVD 497
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ EK+ GL +VR+ +R L ++ +L RK L++++ +
Sbjct: 498 HLAEKIHKTGLKVVRLTAKSREHTDTTIPYL--TLQHQLKVMAGPELRKLIQLKEEIGEL 555
Query: 354 -LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
KDD IR QL K+ KE ++L++A V+ T + AAD + ++ T +
Sbjct: 556 EAKDD-----IR--YSQL-----KRVKE--HDLLAAADVICCTCSSAADARLTKIRTRTV 601
Query: 413 V-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
+ ++ +L GD CQL PV++ +KA G+ SL ER L
Sbjct: 602 LIDESTQATEPEILVSIVRGVRQLVLVGDHCQLGPVVICKKAAMAGLSQSLFERLVLL-- 659
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFV---KPTWITQC 508
G+ +L QYRM+ ++ + S Y GSL + T + VD + KP + C
Sbjct: 660 GIRPFRLQVQYRMHPVLSEFPSNAFYDGSLQNGVTENDRYMKGVDWHWPTHNKPAFFWHC 719
Query: 509 PLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQS 568
G EE L +GT SF N EA V V LI GV P I V +
Sbjct: 720 S---------------GAEE-LSASGT-SFLNRTEAANVEKLVSKLIKGGVQPLQIGVIT 762
Query: 569 PYVAQ------VQHLRERLDD-LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
PY Q H + L+ L E+ VE+A++D+FQGRE D +I++ VRSN +GF
Sbjct: 763 PYEGQRSFIVNYMHTQGTLNSKLYES--VEIASVDAFQGREKDYIIVTCVRSNDALGIGF 820
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
L D RR+NVAITRA + VV ++ + + L+ H +
Sbjct: 821 LSDPRRLNVAITRAKYGMVVVGNAKVLSRHELWYELINHFK 861
>gi|221505815|gb|EEE31460.1| regulator or nonsense transcripts RENT1, putative [Toxoplasma gondii
VEG]
Length = 1449
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 156/489 (31%), Positives = 231/489 (47%), Gaps = 106/489 (21%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKT----GLLKEII--------------ARAV 276
+ SQ AI L + PL +IQGPPGTGKT L+ +++ R
Sbjct: 602 LNPSQMLAIRYAL--QHPLSLIQGPPGTGKTLTCSTLVYQMVKLSEVGSHIHPRCAGRVN 659
Query: 277 QQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV 336
++G +VLV AP+N AVD + E+++ GL ++R+ + +R E S L SF
Sbjct: 660 KEGGQVLVVAPSNVAVDQLAERINRTGLKVIRMYSKSR-----------EGASSSLTSFC 708
Query: 337 AE---FERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKE-------TVKEVL 386
E +K +L+ D +A I QL +Q G+ E+ E+L
Sbjct: 709 VENLALHKKVLELKTG-----SSDEMAKYI-QLKEQTGELAAADERRLRLLISRAEMEIL 762
Query: 387 SSAQVVLATNTGAADPLIRRLDTFD----------------------LVGKRCILAGDQC 424
+A V+ T GA D RL F L K+ +L GD C
Sbjct: 763 QTADVICTTCVGAGD---NRLQGFRFRQVVIDEAAQATEPECLIPIVLGAKQVVLIGDHC 819
Query: 425 QLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI 484
QL PV+LS+KA G+ SL R L G +L QYRM+ A++ + S Y G L
Sbjct: 820 QLGPVVLSKKAAAAGLATSLFSRLLAL--GHRPLRLKVQYRMHPALSFFPSYFFYEGELQ 877
Query: 485 SSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGS--------LSLGCEEHLDLAGTG 536
+ T+ T+ Q P D R P+ + S EE ++G+G
Sbjct: 878 NGVTMTER----------TYFHQGPG---DHRFPWPNEERPMFFYHSTASEE---ISGSG 921
Query: 537 SFY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---LRERLDDLPEAA--GV 590
+ Y N EA + V L+ G+ S I V +PY Q H L +R L +AA +
Sbjct: 922 TSYVNRIEASNIEKIVTFLLKCGLKASQIGVITPYDGQRAHISSLFQRQTTLGQAAFADL 981
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
EVA++D+FQGRE D +++S VRSN+ +GFL DSRR+NVA+TRA K+ ++C ++T+
Sbjct: 982 EVASVDAFQGREKDFILLSCVRSNSNTGIGFLADSRRLNVAMTRA-KYGLIICGNATVLA 1040
Query: 651 NTFLARLLR 659
N ++ R+ R
Sbjct: 1041 N-YMPRVAR 1048
>gi|340346996|ref|ZP_08670112.1| DNA helicase [Prevotella dentalis DSM 3688]
gi|433652214|ref|YP_007278593.1| hypothetical protein Prede_1241 [Prevotella dentalis DSM 3688]
gi|339610499|gb|EGQ15349.1| DNA helicase [Prevotella dentalis DSM 3688]
gi|433302747|gb|AGB28563.1| hypothetical protein Prede_1241 [Prevotella dentalis DSM 3688]
Length = 675
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 149/478 (31%), Positives = 231/478 (48%), Gaps = 72/478 (15%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
+Q++A+ L K + ++ GPPGTGKT L E I + + +VLV A +N AVD + E
Sbjct: 212 TQERAVNEVLRAK-DVEVVHGPPGTGKTTTLVEAINETLMRESQVLVCAQSNMAVDWISE 270
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK-- 355
KL D G+N++R+GNP R++ K LG + + + ++ + + +RK +R+ K
Sbjct: 271 KLVDRGINVLRIGNPTRVN----DKMLGFTYERRFEAH-PDYPQLWA-IRKAIRELRKKR 324
Query: 356 ---DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTF 410
D+S Q +++L + E E+ A+V+ +T GA L+ ++ T
Sbjct: 325 KGRDESY----HQKMERLKSRATELEIRINAELFGEARVIASTLVGADSRLLEGQKFSTL 380
Query: 411 --DLVGK--------------RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
D + R +LAGD CQL P + S A++ G+G +L+ER +
Sbjct: 381 FIDEAAQALEAACWIPIRRVSRVVLAGDHCQLPPTVKSIAAMKAGLGKTLMERIVE-QKP 439
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH---LLVDTPFVKPTWITQCPLL 511
T L QYRM + I ++S+ YGG + ++ A H L ++ PF TWI P
Sbjct: 440 ECVTLLQVQYRMREEIMHFSSEWFYGGR-VETAPQAKHRGILDLENPF---TWIDTAPPQ 495
Query: 512 LL--------------DTRLPYGSLSLGCEEHLDLAGTGSFY---NEGEAEIV---VHHV 551
L D+ LP G LG G Y N GEA + +
Sbjct: 496 LSPAGEVEQVPHKNIGDSLLPEG---LGKASDFSEQFVGESYGRVNRGEAFLTLDALQDY 552
Query: 552 FSLICAGV---SPSAIAVQSPYVAQVQHLRERLDDL----PEAAGVEVATIDSFQGREAD 604
F I + V SPY AQVQ+LR+ + P + V T+D FQG+E D
Sbjct: 553 FVKIGRQRILDEKIDVGVISPYRAQVQYLRQLIKRREFFKPYRHLISVNTVDGFQGQERD 612
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+++SMVR+N G +GFL D RRMNVAITRA + ++ ++ T+ + F RL + +
Sbjct: 613 IILVSMVRANDQGQIGFLCDLRRMNVAITRARMKLIILGNAPTLTRHPFYKRLYTYAK 670
>gi|66805537|ref|XP_636490.1| hypothetical protein DDB_G0288923 [Dictyostelium discoideum AX4]
gi|74852418|sp|Q54I89.1|RENT1_DICDI RecName: Full=Regulator of nonsense transcripts 1; AltName:
Full=Up-frameshift suppressor 1 homolog
gi|60464869|gb|EAL62985.1| hypothetical protein DDB_G0288923 [Dictyostelium discoideum AX4]
Length = 1331
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 204/452 (45%), Gaps = 82/452 (18%)
Query: 252 PLLIIQGPPGTGKTGLLKEII---ARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
PL +IQGPPGTGKT + II + V+ ++VLV P+N A+D + KL ++GL +VR
Sbjct: 552 PLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTPSNVAIDQLTGKLHEIGLKVVR 611
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAG----IR 364
+ S L E V S + +Q K D + G +R
Sbjct: 612 L-----------SSKLREEVASPVEHLTLH------------KQVYKLDQMGDGELGKLR 648
Query: 365 QLLKQLGKTLKKKEKETVK-------EVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
+L + G + EK + +L A V+ AT GA DP RL F
Sbjct: 649 KLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVICATCVGAGDP---RLSQFRFPHILI 705
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
K+ IL GD QL PV+L +K ++ G+ SL ER +L G
Sbjct: 706 DESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKKVVDAGLSQSLFERLISL--GH 763
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
+LT QYRM+ ++ + S Y G L+S SH D+ P + P+ +
Sbjct: 764 HPERLTIQYRMHPSLTEFPSNTSYEGQLVSE---LSHTDRDSQSKFPWPQPKDPMFFFNC 820
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
G EE + +GT SF N EA I V + G P I + +PY Q
Sbjct: 821 --------TGSEE-ISSSGT-SFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRA 870
Query: 576 HLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
++ + +L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 871 YITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNV 930
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ ++ + + L+ H +
Sbjct: 931 ALTRARFGLIILGNAKVLSKDPLWNSLISHFK 962
>gi|374384247|ref|ZP_09641773.1| putative DNA helicase [Odoribacter laneus YIT 12061]
gi|373228854|gb|EHP51157.1| putative DNA helicase [Odoribacter laneus YIT 12061]
Length = 645
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 144/491 (29%), Positives = 229/491 (46%), Gaps = 73/491 (14%)
Query: 222 WSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER 281
+ E KL + +D Q+KA+ L + + + I+ GPPGTGKT L E I + + +
Sbjct: 177 FRERKLPLLRFPWLNDQQEKAVNHVL-RAQDIAIVHGPPGTGKTTTLVEAIYETLHKENQ 235
Query: 282 VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--F 339
VLV A +N AVD + EKL D G++++R+GNP R V K+ SF E F
Sbjct: 236 VLVCAQSNMAVDWISEKLVDRGIHVLRIGNPTR-------------VNDKMLSFTYERRF 282
Query: 340 ERKKS-----DLRKDLRQC---LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQV 391
E ++RK +R+ L+ + L+ L + E + +E+ A+V
Sbjct: 283 EAHPDYPELWNIRKTIRELSPKLRKRETREAVYSRLQHLRHRATELEIKIEQELFGEARV 342
Query: 392 VLATNTGAADPLI--RRLDTFDL----------------VGKRCILAGDQCQLAPVILSR 433
+ +T G+A+ ++ +R T + R ILAGD CQL P I ++
Sbjct: 343 IASTLVGSANKILEGKRFSTLFIDEAAQALEAACWIAIRKTDRVILAGDHCQLPPTIKNK 402
Query: 434 KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH- 492
+A + G+ +L+++ A ++ L QYRM++ I + S+ Y L ++ V
Sbjct: 403 EAAQQGLARTLMQKVAQRQPPAVSL-LQIQYRMHEDIMHFPSRWFYHNCLQAAPEVRFRN 461
Query: 493 -LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNE-----GEAEI 546
L D+P V W C D+ SL + E GE I
Sbjct: 462 ILEYDSPIV---W---CDTQAYDSSEETAGESLSHLNRTEALLLLQQLQEYIQKIGETRI 515
Query: 547 VVHHV-FSLICAGVSPSAIAVQSPYVAQVQHLRERLDD----LPEAAGVEVATIDSFQGR 601
+ + F LI SPY AQV+++R+ + P + + + T+D FQG+
Sbjct: 516 LDEQIDFGLI------------SPYKAQVRYIRQLMRKNPFFKPFSRLISINTVDGFQGQ 563
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
E D + IS+VR+N G +GFL D RRMNVAITRA + ++ D+ T+ H+ F L +I
Sbjct: 564 ERDVIFISLVRANEAGNIGFLQDLRRMNVAITRARMKLILLGDALTLLHHPFYKALFEYI 623
Query: 662 RYFGRVKHAEP 672
+ G + P
Sbjct: 624 QEKGVITTLTP 634
>gi|221484204|gb|EEE22500.1| regulator of nonsense transcripts 1 protein, putative [Toxoplasma
gondii GT1]
Length = 1449
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 156/489 (31%), Positives = 231/489 (47%), Gaps = 106/489 (21%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKT----GLLKEII--------------ARAV 276
+ SQ AI L + PL +IQGPPGTGKT L+ +++ R
Sbjct: 602 LNPSQMLAIRYAL--QHPLSLIQGPPGTGKTLTCSTLVYQMVKLSEVGSHIHPRCAGRVN 659
Query: 277 QQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV 336
++G +VLV AP+N AVD + E+++ GL ++R+ + +R E S L SF
Sbjct: 660 KEGGQVLVVAPSNVAVDQLAERINRTGLKVIRMYSKSR-----------EGASSSLTSFC 708
Query: 337 AE---FERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKE-------TVKEVL 386
E +K +L+ D +A I QL +Q G+ E+ E+L
Sbjct: 709 VENLALHKKVLELKTG-----SSDEMAKYI-QLKEQTGELAAADERRLRLLISRAEMEIL 762
Query: 387 SSAQVVLATNTGAADPLIRRLDTFD----------------------LVGKRCILAGDQC 424
+A V+ T GA D RL F L K+ +L GD C
Sbjct: 763 QTADVICTTCVGAGD---NRLQGFRFRQVVIDEAAQATEPECLIPIVLGAKQVVLIGDHC 819
Query: 425 QLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI 484
QL PV+LS+KA G+ SL R L G +L QYRM+ A++ + S Y G L
Sbjct: 820 QLGPVVLSKKAAAAGLATSLFSRLLAL--GHRPLRLKVQYRMHPALSFFPSYFFYEGELQ 877
Query: 485 SSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGS--------LSLGCEEHLDLAGTG 536
+ T+ T+ Q P D R P+ + S EE ++G+G
Sbjct: 878 NGVTMTER----------TYFHQGPG---DHRFPWPNEERPMFFYHSTASEE---ISGSG 921
Query: 537 SFY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---LRERLDDLPEAA--GV 590
+ Y N EA + V L+ G+ S I V +PY Q H L +R L +AA +
Sbjct: 922 TSYVNRIEASNIEKIVTFLLKCGLKASQIGVITPYDGQRAHISSLFQRQTTLGQAAFADL 981
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
EVA++D+FQGRE D +++S VRSN+ +GFL DSRR+NVA+TRA K+ ++C ++T+
Sbjct: 982 EVASVDAFQGREKDFILLSCVRSNSNTGIGFLADSRRLNVAMTRA-KYGLIICGNATVLA 1040
Query: 651 NTFLARLLR 659
N ++ R+ R
Sbjct: 1041 N-YMPRVAR 1048
>gi|407838371|gb|EKG00049.1| regulator of nonsense transcripts 1, putative,nonsense mRNA
reducing factor 1, putative [Trypanosoma cruzi]
Length = 839
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 190/627 (30%), Positives = 283/627 (45%), Gaps = 111/627 (17%)
Query: 84 LGGMHLVLFRVEGNHRLPPTT--LSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTI 141
GG HL L + +LPP+ L GD + V S ++ LGE+
Sbjct: 244 FGGKHLFLLK-----QLPPSDVGLRCGDHASIWVKGSSRLLNGVVVEIGKSQLGEEEVIF 298
Query: 142 SV-ALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAA 200
V E +++ S R++ D+ + +R C AL L+ + S++A
Sbjct: 299 EVKTYEIERARRALNEILAASTVSFRLE--YDSTSDQRKCHALNLMMTDW-----ASLSA 351
Query: 201 VV--TLFGDKEDVTWLEENDLADWSEVKLDGIMGK--TFDDSQKKAIALGLNKKRPLLII 256
+ T+ G E+ +SEV +D G+ + SQ A+ L + PL +I
Sbjct: 352 YLYFTILGRAEEAA-------KRFSEVDIDLPRGRLSNLNSSQDTAVRTAL--RNPLTLI 402
Query: 257 QGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARI 315
QGPPGTGKT I+ ++ ++LV AP+N AVD + E++S GL VR+ R
Sbjct: 403 QGPPGTGKTSTSVAIVLEVNRRIRSQILVCAPSNVAVDQLAERISAAGLKTVRLHAHYRE 462
Query: 316 SPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLK 375
+ K LG L S V EF S R+ LRQ L+ LK G+ L
Sbjct: 463 VVPSSVKHLG------LDSQVEEFIASSSGNRR-LRQLLE-----------LKLAGEVLD 504
Query: 376 KKEK----ETVKEV----LSSAQVVLATNTGAADPLIRRLDT--FDLV------------ 413
++E+ ++V+++ L A V+ T GAAD RRL F V
Sbjct: 505 EQEQKIYNDSVRDIEEALLGGADVICCTCIGAAD---RRLGKMRFQYVLIDEATQGTEPE 561
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ L GD CQL P++ S A G+ SL ER L G A +L QYR
Sbjct: 562 TLVPLVRGAKQVFLVGDHCQLRPLVFSLPAERAGLRRSLFER--LLMTGHRAVRLDVQYR 619
Query: 466 MNDAIASWASKEMYGGSLISSSTV----ASHLLVDTPFVKPTWITQCPLLLLDTRLPYGS 521
M+ A++ + S + Y G+L + T AS + P+ PT P+ +T
Sbjct: 620 MHPALSLFPSDQFYEGTLQNGLTEEQRDASRVF---PWPDPTR----PIFFYNT------ 666
Query: 522 LSLGCEEHLDLAGTGSFY-NEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRE 579
G EE L+ GS Y N EA + + LI G V P I V +PY Q +++
Sbjct: 667 --TGSEE---LSANGSSYLNRAEAALTERIITKLIRDGKVKPDDIGVITPYGGQCRYVMN 721
Query: 580 ---RLDDLPEAAG--VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
R LP A VEV+++D+FQGRE + +I+S VRSN +GF+ D RR+NV+ITR
Sbjct: 722 YLVRCGPLPRTAYERVEVSSVDAFQGREKEFIILSCVRSNHRQGIGFVVDWRRLNVSITR 781
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHI 661
A + + ++ + + LL H+
Sbjct: 782 AKRGLIIMGNVQLLSRYPAWHALLAHL 808
>gi|150399643|ref|YP_001323410.1| putative DNA helicase [Methanococcus vannielii SB]
gi|150012346|gb|ABR54798.1| putative DNA helicase [Methanococcus vannielii SB]
Length = 633
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 193/699 (27%), Positives = 318/699 (45%), Gaps = 133/699 (19%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+ + EL++ ERD E+ F +EE+ + E+ GRA L I
Sbjct: 7 YVNKYKELVKRERDYEISFHREEIKKMGEKREDI------------GRAILNLKGKILRE 54
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
F G + + R + T +S GD+V + SR S + G V +G
Sbjct: 55 F-------YGEL---IVRYSRKEKFKKTDISVGDIVLI----SREEPLQSDLLGTVVEIG 100
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRID-RIQGLADTLTYERNCEALMLLQKNGLHKR 194
+ I ++LES K +D RI + +T++R +AL +N ++
Sbjct: 101 SN--YIDISLES----------IPKWAFVDIRIDLYVNDVTFKRMIKAL----ENLVNLD 144
Query: 195 NPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLL 254
N I ++ + D S+ ++ KT +D QK A+ L+ R L
Sbjct: 145 NRLIDIILEI-------------DSPTKSKPLNIELIDKTLNDYQKNAVISALSA-RDLY 190
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV-GLNIVRVGNPA 313
+I GPPGTGKT + EII + + +++ TA +N AVDN++ LS IVR+G+P+
Sbjct: 191 LIHGPPGTGKTKTISEIILQEAFRKNKIIATADSNIAVDNILSNLSKYPDFKIVRIGHPS 250
Query: 314 RISPAVASKSLGE-IVK----SKLASFVAE----FERKKSDLRKDL---RQCLKDD---- 357
RIS + SL E I+K KL+ E +E KK+ R DL R+ DD
Sbjct: 251 RISKKLLEYSLYEQILKHEKYEKLSILRKELHKNYEFKKNLNRPDLKWMRKLSNDDIIIF 310
Query: 358 -SLAAGIR-----------------QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399
L IR + +++L + ++K EK + ++SS+ ++L+TN+ A
Sbjct: 311 SKLDKDIRGIPKLEIKKMADWILATEKIEKLKENIEKIEKSIIDSIISSSSIILSTNSMA 370
Query: 400 ADPLIRRLDTFDL-------------------VGKRCILAGDQCQLAPVILSRKALEGGI 440
++ FD+ + ++ I++GD QL P ++S E +
Sbjct: 371 GSEILENY-RFDVCIIDEGSQSMEPSALIPISLSRKLIISGDHKQLPPTVISN---EIEL 426
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
+L ER + + + L QYRMN+ I +++K YG ++S S++ L++ V
Sbjct: 427 KKTLFERLISKYPE-FSKVLQIQYRMNEKIMEFSNKMFYGEMIVSHSSIKHQNLME--IV 483
Query: 501 KPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS 560
K +L +P + + +E + S+YN EAE V+ V V
Sbjct: 484 KNIESFDSEIL---NDMPLQFIDIDGKELKN--KFKSYYNILEAEKVLEVVKKFQKYNVP 538
Query: 561 PSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
S I +PY AQV++ + L + +EV +ID FQGRE + +I+S+VR+N L G
Sbjct: 539 VSVI---TPYDAQVKY----ISGLINSDEIEVKSIDGFQGRENEVIILSLVRTNKL---G 588
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
FL D RR+NVAITRA + + V+ + + + A L+
Sbjct: 589 FLKDLRRLNVAITRAKRKLVVIGSKNLLIKDDTYAEFLK 627
>gi|374586342|ref|ZP_09659434.1| AAA ATPase [Leptonema illini DSM 21528]
gi|373875203|gb|EHQ07197.1| AAA ATPase [Leptonema illini DSM 21528]
Length = 646
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 150/460 (32%), Positives = 225/460 (48%), Gaps = 56/460 (12%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE 297
SQ +A+ LN ++ GPPGTGKT L IA ++ E VLV A TNAAVD +
Sbjct: 185 SQDEAVTGILNTP-DFAVVHGPPGTGKTTTLVAAIAALYRREESVLVCAATNAAVDLLAL 243
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLKD 356
KL + G+ ++R+G+PAR+ A + +L G + A +A++ + + L + R+ +
Sbjct: 244 KLDEQGIPVLRIGHPARVYDAAQALTLEGRMESRSEAKLLAKYRAEAAQLFRQARRFRRS 303
Query: 357 ---------DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL 407
+SL A R L KT+++ EK + +++ VV AT TGA+ P IR
Sbjct: 304 FGAAERAERESLFAEYRAL----QKTIREMEKTALGDIIERTPVVCATLTGASHPSIREK 359
Query: 408 DTFDLV-------------------GKRCILAGDQCQLAPVI-LSRKALEGGIGVSLLER 447
+V +R I+AGD QLAP+I L L + ++ER
Sbjct: 360 RFTTVVIDEATQALEPACYIPLLKNPERIIMAGDHQQLAPLIRLPASPLSETLFAKMIER 419
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VKPTWIT 506
L QYRM I ++++ Y G L++ +V L P +KP
Sbjct: 420 HKDSGRVFF---LNEQYRMQPVILGFSNQRFYEGRLVTHDSV----LNRPPMRMKPEAEV 472
Query: 507 QC--PLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS-PSA 563
LL +DT GS E D A + S +N EA ++V V ++ G P +
Sbjct: 473 SLTGSLLFVDT---AGS---DATEEQD-ADSESRFNRFEAMLLVRIVERMLRLGEDDPES 525
Query: 564 IAVQSPYVAQVQHLRERLDD---LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+A+ +PY AQV LR D LP +EV T+DSFQG E D + +S R+N +G
Sbjct: 526 VALIAPYRAQVDLLRSLCSDVATLPTGQAIEVDTVDSFQGAERDWIGVSFTRNNEEAEIG 585
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
FL D RR NVA+TRA + + +V DS+T+ + F A L+ +
Sbjct: 586 FLKDLRRTNVAMTRARRRLILVGDSTTLSMHPFYADLIAY 625
>gi|17380277|sp|O76512.1|RENT1_CAEEL RecName: Full=Regulator of nonsense transcripts 1; AltName:
Full=ATP-dependent helicase smg-2; AltName:
Full=Nonsense mRNA reducing factor 1; AltName:
Full=Up-frameshift suppressor 1 homolog
gi|3328177|gb|AAC26789.1| nonsense-mediated mRNA decay trans-acting factor [Caenorhabditis
elegans]
Length = 1069
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 223/460 (48%), Gaps = 70/460 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ +A+ L RPL +IQGPPGTGKT + I+ VQ+ E VLV +P+N AVD
Sbjct: 446 LNSSQMQAVKQVLT--RPLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVD 503
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK---KSDLRKDL 350
++ EK+ GL +VR+ +R E ++ + + + K ++L+K +
Sbjct: 504 HLAEKIHKTGLKVVRLCARSR-----------EHSETTVPYLTLQHQLKVMGGAELQKLI 552
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
+ LKD+ AG + L K+ KE E+L++A V+ T + AAD + ++ T
Sbjct: 553 Q--LKDE---AGELEFKDDLRYMQLKRVKE--HELLAAADVICCTCSSAADARLSKIRTR 605
Query: 411 DLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
++ ++ +L GD CQL PV++ +KA G+ SL ER L
Sbjct: 606 TVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL 665
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCP 509
G+ +L QYRM+ ++ + S Y GSL + T + VD + KP
Sbjct: 666 --GIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPN------ 717
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAV--- 566
P E L +GT SF N EA V V LI AGV P I V
Sbjct: 718 -------KPAFFWHCSGSEELSASGT-SFLNRTEAANVEKLVSKLIKAGVQPHQIGVITS 769
Query: 567 ---QSPYVAQVQHLRERLDD-LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
Q ++ H + L+ L E VE+A++D+FQGRE D +I++ VRSN + +GFL
Sbjct: 770 YEGQRSFIVNYMHTQGTLNSKLYE--NVEIASVDAFQGREKDYIIVTCVRSNDILGIGFL 827
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D RR+NVAITRA + +V ++ + + L+ H +
Sbjct: 828 SDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYK 867
>gi|241598902|ref|XP_002404932.1| nonsense-mediated mRNA decay protein, putative [Ixodes scapularis]
gi|215502402|gb|EEC11896.1| nonsense-mediated mRNA decay protein, putative [Ixodes scapularis]
Length = 1122
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 210/456 (46%), Gaps = 67/456 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ V+Q VLV AP+N AVD
Sbjct: 451 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSGTIVYHLVKQSNGPVLVCAPSNIAVD 508
Query: 294 NMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
+ EK+ L +VR+ +R E + S ++ + + + +L
Sbjct: 509 QLTEKIHQTSLKAGVVRLCAKSR-----------EAINSPVSFLALHNQIRNMEGHSELH 557
Query: 352 --QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
Q LKD++ +L K + +K +E+L +A V+ T GA DP + R
Sbjct: 558 KLQQLKDET-----GELSSADEKRYRMLKKACERELLEAADVICCTCVGAGDPRLARFKF 612
Query: 410 FDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
++ K+ IL GD CQL PV++ +KA G+ SL ER
Sbjct: 613 HSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVV 672
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQC 508
L G+ +L QYRM+ ++ + S Y GSL + + VD P+ +P
Sbjct: 673 L--GIRPLRLEVQYRMHPQLSKFPSNFFYEGSLQNGVFADERRMKGVDFPWPQPDK---- 726
Query: 509 PLLLLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P+L C+ ++AG+G S+ N EA +V + + V P I +
Sbjct: 727 PMLFY-----------ACQGQEEMAGSGTSYLNRTEAALVEKIATRFLRSAVKPQQIGII 775
Query: 568 SPYVAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
+PY Q +L + + +EVA++D+FQGRE D +++S VRSN +GFL
Sbjct: 776 TPYEGQRAYLVQHMQFQGALHAKLYQEIEVASVDAFQGREKDLIVMSCVRSNEHQGIGFL 835
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
D RR+NVA+TRA + +V + + LL
Sbjct: 836 NDPRRLNVALTRARYGIIIVGNPKVLSKQPLWNHLL 871
>gi|302829609|ref|XP_002946371.1| hypothetical protein VOLCADRAFT_86581 [Volvox carteri f.
nagariensis]
gi|300268117|gb|EFJ52298.1| hypothetical protein VOLCADRAFT_86581 [Volvox carteri f.
nagariensis]
Length = 1135
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 156/493 (31%), Positives = 221/493 (44%), Gaps = 99/493 (20%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L++ PL +IQGPPGTGKT I+ G +VLV AP+N AVD
Sbjct: 519 LNHSQLHAVKSVLHQ--PLSLIQGPPGTGKTVTSAAIVYHLAHSGTGQVLVAAPSNVAVD 576
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASF-VAEFERKKSDLRKDLRQ 352
+ K+ GL +VR+ A+ AVAS + ++ V E ER LRK L
Sbjct: 577 QLAHKMDQTGLKVVRLC--AKTREAVASPVEHLTLHYQVTHMAVPEGER----LRKLLAL 630
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF-- 410
L A + LK L + L+ EVL +A VV T GA DP RL F
Sbjct: 631 RGAQGGLNASDEKELKSLRRRLEM-------EVLENADVVCTTCVGAGDP---RLANFRF 680
Query: 411 ------------------------------------------------DLVGKRCILAGD 422
++ + IL GD
Sbjct: 681 QHVLIDESTQAAEPECLIPMVLGAKQLPHAAQWVFLLLASPHVHRWRTSMLTAKVILVGD 740
Query: 423 QCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
CQL PVI+ +KA E G+ SL ER L GV +L QYRM+ ++ + S Y G+
Sbjct: 741 HCQLGPVIMCKKAAEAGLCQSLFERLRLL--GVKPIRLQVQYRMHPCLSEFPSNTFYEGT 798
Query: 483 LISSSTVASHLLV--DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540
L + + + LV D P+ P P++ + LG EE + +GT S+ N
Sbjct: 799 LQNGTGMGERRLVGVDFPWHNP----DKPMMFW--------VQLGAEE-ISASGT-SYLN 844
Query: 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE--------RLDDLPEAAGVEV 592
EA V V + G+SPS I V +PY Q H+ R D E +EV
Sbjct: 845 RTEAAAVEKVVTRFLQNGMSPSQIGVITPYEGQRAHVVSVMVRNGAVRQDLYKE---IEV 901
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
+++D+FQGRE D +++S VRSN ++GFL D RR+NVA+TRA + V+ + +
Sbjct: 902 SSVDAFQGREKDIIVLSCVRSNEHSSIGFLSDPRRLNVALTRARYGLVVLGNPRVLSRQP 961
Query: 653 FLARLLRHIRYFG 665
LL++ + G
Sbjct: 962 LWNSLLQYFKESG 974
>gi|388852346|emb|CCF53961.1| probable NAM7-nonsense-mediated mRNA decay protein [Ustilago
hordei]
Length = 1091
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 214/458 (46%), Gaps = 59/458 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + + VLV AP+N AVD
Sbjct: 483 LNHSQVNAVKSVLQK--PLSLIQGPPGTGKTVTSATIVYQLSKMNPGAVLVCAPSNVAVD 540
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R E + S ++ + +D +L++
Sbjct: 541 QLCEKIHLTGLKVVRLSAKSR-----------EALDSPISFLTLHEQVANNDTHIELQKL 589
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
++ L +L + K + KE+LS+A V+ T G DP + ++ ++
Sbjct: 590 IQ---LKNEQGELSSSDERKYKALTRACEKEILSTADVICCTCVGCGDPRLSKIKFRTVL 646
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
K+ + GD QL PVI+++KA G+ SL ER L G
Sbjct: 647 VDEATQAAEPEVMIPLVMGCKQVVFVGDHLQLGPVIMNKKAARAGLSQSLFERLIML--G 704
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLL 512
+L QYRM+ ++ + S Y G+L + T L VD P+ P W+ P+
Sbjct: 705 NRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRREVDFPWPVP-WL---PMFF 760
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
+LG EE + +GT SF N EA V V AGV PS I + +PY
Sbjct: 761 FQ--------NLGQEE-ISSSGT-SFLNRTEASNVEKIVTRFFKAGVKPSQIGIVTPYEG 810
Query: 573 Q----VQHLRERLDDLPE-AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
Q V H++ E VEVA++D+FQGRE D +I+S VRSN +GFL D RR
Sbjct: 811 QRSYIVNHMQLHGSLKKELYKQVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLSDPRR 870
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+NVA+TRA + ++ + + + LL H + G
Sbjct: 871 LNVALTRARYGLVILGNPKVLNKHPLWHYLLVHYKEKG 908
>gi|383112071|ref|ZP_09932871.1| hypothetical protein BSGG_3732 [Bacteroides sp. D2]
gi|382949144|gb|EFS33032.2| hypothetical protein BSGG_3732 [Bacteroides sp. D2]
Length = 645
Score = 173 bits (438), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 215/450 (47%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 221 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 280
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 281 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 334
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 335 RMSHLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAAQALEAAC 394
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 395 WIAIRKADRVILAGDHCQLPPTIKCIEAARGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 453
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+AI + S Y G L ++ V L DTP WI +
Sbjct: 454 EAIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 495
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 496 -DFHEDFVGE-SFGRINKQEANLLLQELEAYI-ERIGKERILDERIDFGLISPYKAQVQY 552
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 553 LRGKIKGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 612
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 613 TRARMKLVILGDASTLTKHPFYKRLMLFIK 642
>gi|423298652|ref|ZP_17276707.1| hypothetical protein HMPREF1070_05372 [Bacteroides ovatus
CL03T12C18]
gi|392662021|gb|EIY55587.1| hypothetical protein HMPREF1070_05372 [Bacteroides ovatus
CL03T12C18]
Length = 645
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 216/450 (48%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 221 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVAVLRIG 280
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 281 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 334
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 335 RMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAAQALEAAC 394
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 395 WIAIRKADRVILAGDHCQLPPTIKCIEASRGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 453
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+AI + S Y G L ++ V L DTP WI +
Sbjct: 454 EAIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 495
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 496 -DFHEDFVGE-SFGRINKQEANLLLQELETYI-ERIGKKRILDERIDFGLISPYKAQVQY 552
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 553 LRGKIKGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 612
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 613 TRARMKLVILGDASTLTKHPFYKRLMLFIK 642
>gi|212693586|ref|ZP_03301714.1| hypothetical protein BACDOR_03103 [Bacteroides dorei DSM 17855]
gi|212663839|gb|EEB24413.1| putative DNA helicase [Bacteroides dorei DSM 17855]
Length = 630
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 147/497 (29%), Positives = 230/497 (46%), Gaps = 83/497 (16%)
Query: 215 EENDLADWSEVKLDGIMGKTF----------DDSQKKAIALGLNKKRPLLIIQGPPGTGK 264
++N LA+ ++ + +TF ++SQ++A+ ++ K + I+ GPPGTGK
Sbjct: 162 KDNRLAELRDIFHGTLKAQTFSFGFTRFPWLNNSQEEAVNKVMHAK-DVAIVHGPPGTGK 220
Query: 265 TGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL 324
T L E I + + +V+V A +N AVD + EKL D G+ ++R+GNP R
Sbjct: 221 TTTLVEAIYETLHRENQVMVCAQSNMAVDWISEKLVDRGIPVLRIGNPTR---------- 270
Query: 325 GEIVKSKLASFVAE--FERKKS-----DLRKDLRQCLKDDSLAA---GIRQLLKQLGKTL 374
V K+ SF E FE +RK +R+ A IR + L
Sbjct: 271 ---VNDKMLSFTYERRFESHPDYPQLWSIRKAIRELYSRSRKGAERENIRLKINSLKDRA 327
Query: 375 KKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------------VGKR 416
+ E + + S A+V+ T +A+ ++ RR T + R
Sbjct: 328 TELEIRINEALFSEARVIACTLVSSANRVLTGRRFGTLFIDEAAQALEPACWIAIRKADR 387
Query: 417 CILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASK 476
+LAGD CQL P I +A GG+ +L++ ++ + L QYRMND I ++S+
Sbjct: 388 IVLAGDHCQLPPTIKCVEAARGGLDQTLMQEIVQ-NKPETVSLLKVQYRMNDEIMHFSSE 446
Query: 477 EMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
Y G L S+ V L DTP W+ + + C E
Sbjct: 447 WFYQGELKSAPEVKYRGILDYDTPI---EWV--------------NTEGMNCNEEFVGES 489
Query: 535 TGSFYNEGEAEIVV----HHVFSLICAGVSPSAIAVQ--SPYVAQVQHLRE--RLDDL-- 584
G N+ EA + + H++ + I V SPY AQVQ+LR+ + D
Sbjct: 490 FGRI-NKAEAALSISQLTHYINKIGKERFLEERIDVGLISPYKAQVQYLRQLIKRDAFFK 548
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
P + + T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITRA + ++ D
Sbjct: 549 PYRHLITINTVDGFQGQERDVILISLVRANEDGQIGFLNDLRRMNVAITRARMKLIILGD 608
Query: 645 SSTICHNTFLARLLRHI 661
+ST+ + F +L +I
Sbjct: 609 ASTLTKHPFYKKLYEYI 625
>gi|340624895|ref|YP_004743348.1| putative DNA helicase [Methanococcus maripaludis X1]
gi|339905163|gb|AEK20605.1| putative DNA helicase [Methanococcus maripaludis X1]
Length = 633
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 178/697 (25%), Positives = 321/697 (46%), Gaps = 131/697 (18%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+ + EL++ ERD E+ F +EE+ + EN GRA L +
Sbjct: 7 YVNKFKELVKKERDHEINFHKEEIKKLGIKRENV------------GRAILNLNGKVIRE 54
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
F G ++V R + + T +S GD+V + S+G S + G V +G
Sbjct: 55 FF--------GEYIV--RYGRSEKFKKTDISVGDIVLI----SKGNPLQSDLLGTVIEIG 100
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
+ +S+ + K +RID + +T++R ML N L K N
Sbjct: 101 SNHVDVSMEI--------VPKWALNDIRIDL---YVNDVTFKR-----ML---NALDKFN 141
Query: 196 PSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLI 255
+ ++ + + ++ + +E++ + ++ QK+A+ L+ R L +
Sbjct: 142 STDNRLIDI------ILSVDSPQKSKTTEIRF---LDYRLNEYQKEAVLEALSA-RDLYL 191
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD-VGLNIVRVGNPAR 314
I GPPGTGKT + E+I + + +V+ TA +N AVDN++ +S IVR+G+P+R
Sbjct: 192 IHGPPGTGKTSTISEVILQEALRKNKVIATADSNIAVDNILSNISKHESFKIVRIGHPSR 251
Query: 315 ISPAVASKSL-GEIVKSKLASFVAEFE---RKKSDLRKDL-------RQCLKDDSLAA-- 361
IS + SL +I + S + + + +K DLRK+ R+ + +D +
Sbjct: 252 ISKKLMKYSLQNKITEHPNYSTLVKLKTDLQKNYDLRKNFQRPDPKWRRGMSNDDIIIFS 311
Query: 362 -------GI-RQLLKQLG-------------KTLKKKEKETVKEVLSSAQVVLATNTGAA 400
GI ++ +KQ+ + ++K EK+ + +++S++ VV+ATN+ A
Sbjct: 312 KLNKDIRGIPKETIKQMADWVICSENIAKTKENVQKFEKKLIDDIISTSDVVVATNSMAG 371
Query: 401 DPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIG 441
++ FD+ ++ I+AGD QL P +LS E +
Sbjct: 372 SEILEDY-KFDVCVIDEGSQSTEPSSLIPIVRSRKLIIAGDHKQLPPTVLSD---ELELK 427
Query: 442 VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
+L ER H + L QYRMN+ I ++++ Y LI+ +V S L++ +
Sbjct: 428 KTLFERMIQDHPE-FSKILQVQYRMNEKIMEFSNEMFYENKLIAHESVKSQNLIE---IV 483
Query: 502 PTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSP 561
+ ++ + L + +++ EE + S YN EAE V+ V L +
Sbjct: 484 ENVSNEDKDIINEKTLQF--INVDGEEKQN--SFKSSYNVEEAEKVLEIVSKLQKYEIPV 539
Query: 562 SAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
S I +PY AQV+++ + L+ ++V ++D FQGRE + ++IS VR++ + GF
Sbjct: 540 SVI---TPYDAQVKYISKMLN----TDKIDVKSVDGFQGRENEVIVISFVRTSKM---GF 589
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
L D RR+NVA+TRA + + VV + + + ++ L
Sbjct: 590 LKDLRRLNVAVTRAKRKLIVVGSKNLLIKDDAYSKFL 626
>gi|254585189|ref|XP_002498162.1| ZYRO0G03740p [Zygosaccharomyces rouxii]
gi|238941056|emb|CAR29229.1| ZYRO0G03740p [Zygosaccharomyces rouxii]
Length = 944
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 150/457 (32%), Positives = 217/457 (47%), Gaps = 65/457 (14%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMV 296
SQ A+ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD++
Sbjct: 409 SQSHAVEHAL--QRPLSLIQGPPGTGKTVTSATIVYHLSKLHKDRILVCAPSNVAVDHLA 466
Query: 297 EKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
KL +GL +VR+ +R + +V+ +L +V S+ A + K + +L +
Sbjct: 467 AKLRMLGLKVVRLTARSREDVESSVSDLALHNLV-SRSAKGELKKLLKLKEEVGEL--SV 523
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-FDLV 413
KD K+ K +K E + +L A VV T GA D RRL F V
Sbjct: 524 KD----------TKKFVKMVKIAESD----ILKKADVVCCTCVGAGD---RRLGAKFKTV 566
Query: 414 --------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
+ IL GD QL PVIL RKA + G+ SL ER +L
Sbjct: 567 LIDESTQASEPECLIPIVKGAIQVILVGDHQQLGPVILERKAGDAGLKQSLFERLISL-- 624
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I + P++
Sbjct: 625 GHVPLRLEVQYRMNPHLSEFPSNMFYEGSLQNGVTIEQRTVPNSTFPWP--IHEVPMMFW 682
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
YG E + GT S+ N EA + L GV P I V +PY Q
Sbjct: 683 AN---YG------REEISANGT-SYLNRIEAMNCERIITRLFKDGVKPEQIGVITPYEGQ 732
Query: 574 VQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRM 628
++ + + D VEVA++D+FQGRE D +I+S VR+N ++GFL DSRRM
Sbjct: 733 RAYILQYMQMNGSLDTDLYVNVEVASVDAFQGREKDYIILSCVRANDQQSIGFLSDSRRM 792
Query: 629 NVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
NV +TRA + ++ + + N LL H R G
Sbjct: 793 NVGLTRAKYGLVILGNPRALSTNVLWNNLLIHFREKG 829
>gi|265755988|ref|ZP_06090455.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|423242331|ref|ZP_17223440.1| hypothetical protein HMPREF1065_04063 [Bacteroides dorei
CL03T12C01]
gi|263234066|gb|EEZ19667.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|392639617|gb|EIY33433.1| hypothetical protein HMPREF1065_04063 [Bacteroides dorei
CL03T12C01]
Length = 630
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 147/497 (29%), Positives = 230/497 (46%), Gaps = 83/497 (16%)
Query: 215 EENDLADWSEVKLDGIMGKTF----------DDSQKKAIALGLNKKRPLLIIQGPPGTGK 264
++N LA+ ++ + +TF ++SQ++A+ ++ K + I+ GPPGTGK
Sbjct: 162 KDNRLAELRDIFHGTLKAQTFSFGFTRFPWLNNSQEEAVNKVMHAK-DVAIVHGPPGTGK 220
Query: 265 TGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL 324
T L E I + + +V+V A +N AVD + EKL D G+ ++R+GNP R
Sbjct: 221 TTTLVEAIYETLHRENQVMVCAQSNMAVDWISEKLVDRGVPVLRIGNPTR---------- 270
Query: 325 GEIVKSKLASFVAE--FERKKS-----DLRKDLRQCLKDDSLAA---GIRQLLKQLGKTL 374
V K+ SF E FE +RK +R+ A IR + L
Sbjct: 271 ---VNDKMLSFTYERRFESHPDYPQLWSIRKAIRELYSRSRKGAERENIRLKINSLKDRA 327
Query: 375 KKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------------VGKR 416
+ E + + S A+V+ T +A+ ++ RR T + R
Sbjct: 328 TELEIRINEALFSEARVIACTLVSSANRVLTGRRFGTLFIDEAAQALEPACWIAIRKADR 387
Query: 417 CILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASK 476
+LAGD CQL P I +A GG+ +L++ ++ + L QYRMND I ++S+
Sbjct: 388 IVLAGDHCQLPPTIKCVEAARGGLDQTLMQEIVQ-NKPETVSLLKVQYRMNDEIMHFSSE 446
Query: 477 EMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
Y G L S+ V L DTP W+ + + C E
Sbjct: 447 WFYQGELKSAPEVKYRGILDYDTPI---EWV--------------NTEGMNCNEEFVGES 489
Query: 535 TGSFYNEGEAEIVV----HHVFSLICAGVSPSAIAVQ--SPYVAQVQHLRE--RLDDL-- 584
G N+ EA + + H++ + I V SPY AQVQ+LR+ + D
Sbjct: 490 FGRI-NKAEAALSISQLTHYINKIGKERFLEERIDVGLISPYKAQVQYLRQLIKRDAFFK 548
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
P + + T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITRA + ++ D
Sbjct: 549 PYRHLITINTVDGFQGQERDVILISLVRANEDGQIGFLNDLRRMNVAITRARMKLIILGD 608
Query: 645 SSTICHNTFLARLLRHI 661
+ST+ + F +L +I
Sbjct: 609 ASTLTKHPFYKKLYEYI 625
>gi|260950771|ref|XP_002619682.1| hypothetical protein CLUG_00841 [Clavispora lusitaniae ATCC 42720]
gi|238847254|gb|EEQ36718.1| hypothetical protein CLUG_00841 [Clavispora lusitaniae ATCC 42720]
Length = 967
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 145/472 (30%), Positives = 229/472 (48%), Gaps = 64/472 (13%)
Query: 224 EVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERV 282
E L+ + SQ+ A+A + PL +IQGPPGTGKT I+ V+ + RV
Sbjct: 419 ENSLNNKRCSALNASQRAAVAHAIAS--PLTLIQGPPGTGKTVTSAAIVRELVRLRRSRV 476
Query: 283 LVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
LV AP+N AVD++ KL GL +VR+ +R E ++S+ A+ +A +
Sbjct: 477 LVCAPSNVAVDHLALKLRAAGLKVVRLAARSR-----------EDIESE-ATPLALHTQV 524
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
++ + + +R L D + G +L + + + + ++++SSA V+ T GA D
Sbjct: 525 RAAIPRRVR-TLVDKQASGG--ELDARAKARIARSWRAAEQKLISSADVICTTCVGADD- 580
Query: 403 LIRRLDTFDLV----------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
RRL+ ++ K+ +L GD QL PV+L A G+
Sbjct: 581 --RRLEEYEFPIVLVDESTQATEPEALIPITRGAKQVVLVGDHQQLGPVVLDPAASAAGL 638
Query: 441 GVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
SL ER ++ G + +L QYRM+ A++ +AS Y GSL++ T F
Sbjct: 639 RRSLFERLVSM--GHVPLRLEVQYRMHPALSEFASNMFYEGSLLNGVTSDDRTRPGADFP 696
Query: 501 KPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS 560
P + P++ YG +G A S+ N EA V + L+ GVS
Sbjct: 697 WP--VPDRPMMFWAN---YGKEEIG-------ANGSSYLNRVEAMNVDKIIARLVRDGVS 744
Query: 561 PSAIAVQSPYVAQVQHLRERL---DDLPEAA----GVEVATIDSFQGREADAVIISMVRS 613
P I V +PY Q ++ + L +P++A VEV+++D+FQGRE D +I+S VR+
Sbjct: 745 PDQIGVITPYEGQRVYIWQYLKLNSTVPKSALNELEVEVSSVDAFQGREKDYIILSCVRA 804
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
N +GFL DSRR+NVA+TRA + ++ + ++ N LL H R G
Sbjct: 805 NEDRDIGFLKDSRRLNVALTRAKFGLIILGNPRSLSKNKLWNSLLVHYRERG 856
>gi|70949042|ref|XP_743968.1| regulator of nonsense transcripts [Plasmodium chabaudi chabaudi]
gi|56523717|emb|CAH78222.1| regulator of nonsense transcripts, putative [Plasmodium chabaudi
chabaudi]
Length = 670
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 218/438 (49%), Gaps = 56/438 (12%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR--AVQQGERVLVTAPTNAAVD 293
+ SQ AI LN PL +IQGPPGTGKT ++ + G +VLVTAP+N AVD
Sbjct: 102 NHSQIDAIQKSLNS--PLSLIQGPPGTGKTLTCATLVYHMHKTKMGGKVLVTAPSNVAVD 159
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ ++ GL +VR+ +R S + + L + KL K+D+ ++L +
Sbjct: 160 QLSVRIHRTGLKVVRLCARSRESVSSIADYLYLHNQVKLL---------KTDVGEELNKL 210
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV 413
L+ L + +L ++ LKK ++L A V+ T GA D +++ F+ V
Sbjct: 211 LE---LKEEVGELSQKDENRLKKLILHAEYKILIEADVICTTCVGAMDKRLKKF-RFNQV 266
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
K+ +L GD CQL P+I+ +KA G+G SL ER L G
Sbjct: 267 LVDEATQSTEPECLVPLVTAKQIVLVGDHCQLGPIIVCKKAASAGLGKSLFERLVML--G 324
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW-ITQCPLLLL 513
+ +L QYRM+ ++ + S Y G L + T+ + P W ++ P+
Sbjct: 325 ITPFRLEVQYRMHPCLSEFPSYVFYDGCLQNGITLKER---EYPLKNFPWPNSKYPMFFY 381
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
++ G EE + +GT S+ N EA+ + V +L+ +G+ + I V +PY Q
Sbjct: 382 NSN--------GLEE-MSASGT-SYLNRSEAQNMEILVRALLNSGLKATQIGVITPYEGQ 431
Query: 574 ---VQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
+ L ++ +EVA++D+FQGRE D +++S VRSN +GFL D RR+NV
Sbjct: 432 RAYITSLFQKNISYQHCLDIEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRRLNV 491
Query: 631 AITRACKHVAVVCDSSTI 648
A+TRA K+ ++C ++ +
Sbjct: 492 ALTRA-KYGLIICGNAKV 508
>gi|427385832|ref|ZP_18882139.1| hypothetical protein HMPREF9447_03172 [Bacteroides oleiciplenus YIT
12058]
gi|425726871|gb|EKU89734.1| hypothetical protein HMPREF9447_03172 [Bacteroides oleiciplenus YIT
12058]
Length = 629
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 215/450 (47%), Gaps = 69/450 (15%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+G
Sbjct: 204 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWISEKLVDRGVNVLRIG 263
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC--LKDDSLAA 361
NP R V K+ SF E FE S +RK +R+ + S
Sbjct: 264 NPTR-------------VNDKMLSFTYERRFESHPSYTELWGIRKAMREMNGRRRGSYEE 310
Query: 362 --GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----- 412
R L +L + E + ++ SA V+ +T + ++ RR T +
Sbjct: 311 RESARNRLSRLRDRATQLEIQINADLFDSAHVIASTLVSSNHRVLNGRRFGTLFIDEAAQ 370
Query: 413 -----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLT 461
R +LAGD CQL I +A G+ +L+ER T V++ L
Sbjct: 371 ALEAACWIAIRKADRIVLAGDHCQLPATIKCYEAARAGLEHTLMERIVTTKPTVVSL-LK 429
Query: 462 TQYRMNDAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRL-- 517
QYRMN+AI + S+ Y G L ++ + L DTP TWI + + +
Sbjct: 430 IQYRMNEAIMHFPSQWFYDGQLEAAPEIRHRGILDWDTPI---TWIDTSEMEFKEEFVGE 486
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNE-GEAEIVVHHV-FSLICAGVSPSAIAVQSPYVAQVQ 575
+G ++ E HL L ++ G I+ + F +I SPY AQVQ
Sbjct: 487 TFGRINRE-EAHLLLKELEAYIQRIGGHRILDERIDFGII------------SPYKAQVQ 533
Query: 576 HLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
+LR ++ P + + V T+D FQG+E D V IS+VR+N G +GFL D RRMNVA
Sbjct: 534 YLRNKIKTSAALRPYRSLLTVNTVDGFQGQERDVVFISLVRANEEGQIGFLNDLRRMNVA 593
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHI 661
ITRA + ++ +++T+ H+ F +L+ +I
Sbjct: 594 ITRARMKLVILGEANTLKHHKFYHKLIEYI 623
>gi|323507767|emb|CBQ67638.1| probable NAM7-nonsense-mediated mRNA decay protein [Sporisorium
reilianum SRZ2]
Length = 1094
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 141/460 (30%), Positives = 214/460 (46%), Gaps = 63/460 (13%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + + VLV AP+N AVD
Sbjct: 479 LNHSQVNAVKSVLQK--PLSLIQGPPGTGKTVTSASIVYQLSKMNPGPVLVCAPSNVAVD 536
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R E + S ++ + +D +L++
Sbjct: 537 QLTEKIHMTGLKVVRLTAKSR-----------EALDSPISFLTLHEQVANNDTNIELQKL 585
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPLIRRLDT 409
++ ++ +L + ++K K + KE+LS+A V+ T G DP + ++
Sbjct: 586 IQ-------LKNEQGELSSSDERKCKALIRACEKEILSTADVICCTCVGCGDPRLAKIKF 638
Query: 410 FDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
++ K+ + GD QL PVI+++K G SL ER
Sbjct: 639 RTVLVDEATQAAEPECMIPLVMGCKQVVFVGDHLQLGPVIMNKKVARAGASQSLFERLIM 698
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G +L QYRM+ ++ + S Y G+L + T L D F P + P+
Sbjct: 699 L--GNRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKDVDFPWP--VPSLPM 754
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L +LG EE + +GT SF N EA V V AGV PS I + +PY
Sbjct: 755 LFFQ--------NLGQEE-ISSSGT-SFLNRTEASNVEKIVTRFFKAGVKPSQIGIVTPY 804
Query: 571 VAQ----VQHLRERLDDLPE-AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q V H++ E VEVA++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 805 EGQRSYIVNHMQLHGSLKKELYKEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLSDP 864
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NVA+TRA + ++ + + + LL H + G
Sbjct: 865 RRLNVALTRARYGLVILGNPKVLNKHPLWHYLLVHYKEKG 904
>gi|294778267|ref|ZP_06743693.1| putative DNA helicase [Bacteroides vulgatus PC510]
gi|294447895|gb|EFG16469.1| putative DNA helicase [Bacteroides vulgatus PC510]
Length = 630
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 147/504 (29%), Positives = 233/504 (46%), Gaps = 101/504 (20%)
Query: 217 NDLADWSEVKLDGIMGKTF----------DDSQKKAIALGLNKKRPLLIIQGPPGTGKTG 266
N LA+ E+ +TF +++Q++A+ ++ K + I+ GPPGTGKT
Sbjct: 164 NRLAELREIFHGNQQAETFSFGFTRFPWLNNTQEEAVNKVMHAK-DVAIVHGPPGTGKTT 222
Query: 267 LLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGE 326
L E I + + +V+V A +N AVD + EKL D G+ ++R+GNP R
Sbjct: 223 TLVEAIYETLHRENQVMVCAQSNMAVDWISEKLVDRGVPVLRIGNPTR------------ 270
Query: 327 IVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVL 386
V K+ +F E ++ + D Q S+ IR+L G++ K E+E +++ +
Sbjct: 271 -VNDKMLAFTYE---RRFESHPDYPQLW---SIRKAIREL---YGRSRKGAERENIRQKI 320
Query: 387 SS-------------------AQVVLATNTGAADPLI--RRLDTFDL------------- 412
+S A+V+ T +A+ ++ R+ T +
Sbjct: 321 NSLKDRATELEIRINEALFGEARVIACTLVSSANRILTGRKFSTLFIDEAAQALEPACWI 380
Query: 413 ---VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
R ILAGD CQL P I +A GG+ +L++ A ++ L QYRMND
Sbjct: 381 AIRKADRVILAGDYCQLPPTIKCMEAARGGLDRTLMQEIADNKPDTVSL-LKVQYRMNDE 439
Query: 470 IASWASKEMYGGSLISSSTVA--SHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
I ++S+ Y G L S+ V S L DTP WI + + C
Sbjct: 440 IMRFSSEWFYQGELKSAPEVKYRSILDYDTPI---EWI--------------NTEGMECN 482
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA------IAVQSPYVAQVQHLRE-- 579
E G N+ EA + + + + I + + SPY AQVQ+LR+
Sbjct: 483 EEFVGESFGRI-NKEEAALSISQLTNYINKIGKDRFLEERIDVGLISPYKAQVQYLRQLI 541
Query: 580 RLDDL--PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
+ D P + + T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITRA
Sbjct: 542 KRDAFFKPYRHLITINTVDGFQGQERDVILISLVRANEEGQIGFLNDLRRMNVAITRARM 601
Query: 638 HVAVVCDSSTICHNTFLARLLRHI 661
+ ++ D+ST+ + F +L +I
Sbjct: 602 KLIILGDASTLTKHPFYKKLYEYI 625
>gi|19113992|ref|NP_593080.1| ATP-dependent RNA helicase Upf1 [Schizosaccharomyces pombe 972h-]
gi|19924241|sp|Q09820.2|RENT1_SCHPO RecName: Full=ATP-dependent helicase upf1; AltName:
Full=Nonsense-mediated mRNA decay protein upf1; AltName:
Full=Regulator of nonsense transcripts 1 homolog;
AltName: Full=Up-frameshift suppressor 1
gi|4894186|emb|CAA91194.2| ATP-dependent RNA helicase Upf1 [Schizosaccharomyces pombe]
Length = 925
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 152/488 (31%), Positives = 229/488 (46%), Gaps = 81/488 (16%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII-------ARAVQQGERVLVTAPTNA 290
SQ +A+ L+K PL +IQGPPGTGKT ++ +R + VLV AP+N
Sbjct: 396 SQSEAVRAVLSK--PLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPSNV 453
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKD 349
AVD + EK+ GL +VRV A+KS +I S SF++ E+ K +
Sbjct: 454 AVDQLAEKIHRTGLRVVRV----------AAKSREDIESS--VSFLSLHEQIKNYKFNPE 501
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
L++ LK L + +L Q K L+ KE+L +A V+ T GA D RR+
Sbjct: 502 LQRLLK---LRSENNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVGAGD---RRISK 555
Query: 410 FD----------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+ L K+ +L GD QL PV++++K + SL ER
Sbjct: 556 YKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLFER 615
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL----ISSSTVASHLLVDTPFVKPT 503
L G +L QYRM+ ++ + S Y G+L +S +A H VD P+++P
Sbjct: 616 LIIL--GNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARH--VDFPWIQP- 670
Query: 504 WITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA 563
PL+ Y + +E L +GT SF N EA V + + + V P
Sbjct: 671 ---DSPLMF------YANFG---QEELSASGT-SFLNRTEASTCEKIVTTFLRSNVLPEQ 717
Query: 564 IAVQSPYVAQ----VQHLRER---LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
I + +PY Q VQ+++ DL +A VEVA++D+FQGRE D +I+S VRS+
Sbjct: 718 IGIVTPYDGQRSYIVQYMQNNGSMQKDLYKA--VEVASVDAFQGREKDFIILSCVRSSEH 775
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFG 676
+GF+ D RR+NVA+TRA V V+ + + + + H + G + S
Sbjct: 776 QGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQ 835
Query: 677 GSGLGMDP 684
L + P
Sbjct: 836 KFSLTLTP 843
>gi|392567037|gb|EIW60212.1| ATP dependent helicase, partial [Trametes versicolor FP-101664 SS1]
Length = 1084
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 210/448 (46%), Gaps = 77/448 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT I+ + +VLV AP+N AVD + EK+ GL +VR
Sbjct: 459 QKPLSLIQGPPGTGKTVTSASIVYHLAKMNPGQVLVCAPSNVAVDQLTEKIHATGLKVVR 518
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ +R E + S + SF+ L Q + +++ +++L++
Sbjct: 519 LSAKSR-----------EALDSSV-SFLT------------LHQQVANNTTHVELQKLIQ 554
Query: 369 ------QLGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPLIRRLD---------- 408
+L ++K K + KE+L A V+ T GA DP + +L
Sbjct: 555 LKNEQGELSSNDERKYKALIRQCEKEILGVADVICCTCVGAGDPRLSKLKFRTVLIDEAT 614
Query: 409 ---------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459
L K+ +L GD QL PVI+++KA G+ SL ER L G +
Sbjct: 615 QAAEPECMIPLILGCKQVVLVGDHQQLGPVIMNKKAARAGLTQSLFERLVVL--GNRPIR 672
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPY 519
L QYRM+ ++ + S Y G+L + T L + F P + P+
Sbjct: 673 LQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWP--VPDTPMFFYQ----- 725
Query: 520 GSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
+LG EE + +GT SF N EA V V +GV PS I V +PY Q ++
Sbjct: 726 ---NLGQEE-ISSSGT-SFLNRTEASNVEKIVTKFFKSGVVPSQIGVITPYEGQRSYIVN 780
Query: 580 RLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
+ DL + +EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+
Sbjct: 781 YMQFNGSLKKDLYKE--IEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVAL 838
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRH 660
TRA V ++ + + T L L H
Sbjct: 839 TRAKYGVVILGNPKVLSKLTRLQHPLWH 866
>gi|298479725|ref|ZP_06997925.1| DNA helicase [Bacteroides sp. D22]
gi|298274115|gb|EFI15676.1| DNA helicase [Bacteroides sp. D22]
Length = 649
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 140/450 (31%), Positives = 215/450 (47%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 225 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 284
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 285 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 338
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 339 RMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFSTLFIDEAAQALEAAC 398
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 399 WIAIRKADRVILAGDHCQLPPTIKCIEASRGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 457
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+ I + S Y G L ++ V L DTP WI +
Sbjct: 458 ETIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 499
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 500 -DFHEDFVGE-SFGRINKQEANLLLQELETYI-ERIGKERILDERIDFGLISPYKAQVQY 556
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 557 LRGKIKGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 616
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 617 TRARMKLVILGDTSTLAKHPFYKRLMLFIK 646
>gi|159905473|ref|YP_001549135.1| putative DNA helicase [Methanococcus maripaludis C6]
gi|159886966|gb|ABX01903.1| DNA helicase [Methanococcus maripaludis C6]
Length = 633
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 186/702 (26%), Positives = 318/702 (45%), Gaps = 141/702 (20%)
Query: 16 FTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNL 75
+ + L+R ERD E+ F +EE+ + EN GRA L +
Sbjct: 7 YVNKFKGLVRKERDQEINFHKEEIKKLGIRRENV------------GRAILNLNGKVLRE 54
Query: 76 FVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLG 135
F G ++V R + T +S GD+V + S+G S + G V +G
Sbjct: 55 FF--------GEYVV--RYGRREKFKKTDISVGDVVLI----SKGNPLQSDLLGTVIEIG 100
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
+ +S+ + K +R+D + +T++R ML N L K N
Sbjct: 101 LNHVDVSMEV--------VPKWALNDIRLDL---YVNDVTFKR-----ML---NALDKFN 141
Query: 196 PS----IAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKR 251
+ I ++ + G K+ + +E++ + + ++ QK+A+ L R
Sbjct: 142 SADNRLIDIILGVDGPKQ----------SKKTEIRF---LDYSLNEYQKEAVLEAL-AAR 187
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV-GLNIVRVG 310
L +I GPPGTGKT + E+I + + +V+ TA +N AVDN++ +S IVR+G
Sbjct: 188 DLYLIHGPPGTGKTRTISEVILQEALRKNKVIATADSNIAVDNILSNISKYESFKIVRIG 247
Query: 311 NPARISPAVASKSL-GEIVKSKLASFVAEFE---RKKSDLRKDL-------RQCLKDD-- 357
+P+RIS + SL +I + + + + + +K DLRK R+ + DD
Sbjct: 248 HPSRISKKLMKYSLQNKITEHPKYNTLKKMKMDLQKNYDLRKSFKRPDPKWRRGMTDDEI 307
Query: 358 ----SLAAGIRQLLKQ-----------------LGKTLKKKEKETVKEVLSSAQVVLATN 396
L IR + K+ L + ++K EK+ + +++S++ VV+ATN
Sbjct: 308 IIFSKLNKDIRGVPKETIKKMADWVICSENIAKLKENIQKFEKKIIDDIVSTSDVVVATN 367
Query: 397 TGAADPLIRRLDTFD-------------------LVGKRCILAGDQCQLAPVILSRKALE 437
+ A ++ FD ++ ++ I+AGD QL P +LS E
Sbjct: 368 SMAGSEILEDY-RFDVCAIDEGSQSMEPSSLIPIVMSRKLIIAGDHKQLPPTVLSD---E 423
Query: 438 GGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ +L ER +HE +K L QYRMN+ I ++++ Y LI+ +V H L+D
Sbjct: 424 LELKKTLFER--MIHENSDFSKILQVQYRMNEKIMEFSNEMFYKNKLIAHGSVKFHNLLD 481
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
VK ++ + P +++ +E D S YN EA VV V L
Sbjct: 482 --IVKNVSKEDKDIV---NKKPLQFINVDGQEKQD--SFKSSYNVEEAYKVVEIVSKLRK 534
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
+ S I +PY AQV+++ L+ ++V ++D FQGRE + ++IS VR++ +
Sbjct: 535 YEIPVSVI---TPYDAQVKYISNMLN----TNEIDVKSVDGFQGRENEVIVISFVRTDKM 587
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
GFL D RR+NVA+TRA + + VV + + + ++ L
Sbjct: 588 ---GFLKDLRRLNVAVTRARRKLIVVGSKNLLIKDDAYSKFL 626
>gi|423312487|ref|ZP_17290424.1| hypothetical protein HMPREF1058_01036 [Bacteroides vulgatus
CL09T03C04]
gi|392688175|gb|EIY81464.1| hypothetical protein HMPREF1058_01036 [Bacteroides vulgatus
CL09T03C04]
Length = 630
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 141/475 (29%), Positives = 224/475 (47%), Gaps = 91/475 (19%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
+++Q++A+ ++ K + I+ GPPGTGKT L E I + + +V+V A +N AVD +
Sbjct: 193 NNTQEEAVNKVMHAK-DVAIVHGPPGTGKTTTLVEAIYETLHRENQVMVCAQSNMAVDWI 251
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
EKL D G+ ++R+GNP R V K+ +F E ++ + D Q
Sbjct: 252 SEKLVDRGVPVLRIGNPTR-------------VNDKMLAFTYE---RRFESHPDYPQLW- 294
Query: 356 DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSS-------------------AQVVLATN 396
S+ IR+L G++ K E+E +++ ++S A+V+ T
Sbjct: 295 --SIRKAIREL---YGRSRKGAERENIRQKINSLKDRATELEIRINEALFGEARVIACTL 349
Query: 397 TGAADPLI--RRLDTFDL----------------VGKRCILAGDQCQLAPVILSRKALEG 438
+A+ ++ R+ T + R ILAGD CQL P I +A G
Sbjct: 350 VSSANRILTGRKFSTLFIDEAAQALEPACWIAIRKADRVILAGDYCQLPPTIKCMEAARG 409
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVA--SHLLVD 496
G+ +L++ A ++ L QYRMND I ++S+ Y G L S+ V S L D
Sbjct: 410 GLDRTLMQEIADNKPDTVSL-LKVQYRMNDEIMRFSSEWFYQGELKSAPEVKYRSILDYD 468
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
TP WI + + C E G N+ EA + + + + I
Sbjct: 469 TPI---EWI--------------NTEGMECNEEFVGESFGRI-NKEEAALSISQLTNYIN 510
Query: 557 AGVSPSA------IAVQSPYVAQVQHLRE--RLDDL--PEAAGVEVATIDSFQGREADAV 606
+ + SPY AQVQ+LR+ + D P + + T+D FQG+E D +
Sbjct: 511 KIGKDRFLEERIDVGLISPYKAQVQYLRQLIKRDAFFKPYRHLITINTVDGFQGQERDVI 570
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+IS+VR+N G +GFL D RRMNVAITRA + ++ D+ST+ + F +L +I
Sbjct: 571 LISLVRANEEGQIGFLNDLRRMNVAITRARMKLIILGDASTLTKHPFYKKLYEYI 625
>gi|67481561|ref|XP_656130.1| regulator of nonsense transcripts [Entamoeba histolytica HM-1:IMSS]
gi|56473310|gb|EAL50744.1| regulator of nonsense transcripts, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449704720|gb|EMD44907.1| Hypothetical protein EHI5A_012990 [Entamoeba histolytica KU27]
Length = 937
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 137/467 (29%), Positives = 222/467 (47%), Gaps = 64/467 (13%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+ L +IQGPPGTGKT I+ VQ G++VLV AP+N AVD + K+++ G+ ++R
Sbjct: 416 KQLSLIQGPPGTGKTVTSATIVYHVVQSNPGKKVLVCAPSNIAVDQLGTKITETGVKVIR 475
Query: 309 VGNPARISP--AVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
V + +R + ++ SL +++ KL KK L Q KDD +
Sbjct: 476 VYSKSRETEDESLYDYSLKTLMEEKL---------KKDKEMFALYQEYKDDPDSLDFVS- 525
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP----LIRRLDT------------- 409
T++K+ + +L V+ T GA D ++ +DT
Sbjct: 526 ----TATIQKRINQIELSLLRETDVICCTCCGALDTRLSGILEHIDTVLIDESTQADEPE 581
Query: 410 ----FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
+ K+ L GD CQL P++ S +A + G+G+ + R L G +L QYR
Sbjct: 582 CLICLNNSVKQLFLVGDHCQLGPILNSSRAKKYGLGLPMFSRLLQL--GHEPYRLQFQYR 639
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC-PLLLL--DTRLPYGSL 522
M+ ++ ++S+ Y G L + T P +K W Q P++ + + + YGS
Sbjct: 640 MHPCLSEFSSQTFYDGVLQNGVTALERQF---PSLKYFWFKQNKPMMFIAANGKESYGS- 695
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD 582
GT S+ N+ E I+ + ++ VSPS I V +PY+AQ Q + RL
Sbjct: 696 ----------NGT-SYINDEEVFIIEQIIIKMLGNKVSPSQIGVITPYIAQKQAIISRLS 744
Query: 583 ---DLPEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
+ EA +E+A++DSFQGRE D +I S VRSN + +GFL +R+NV+ITRA
Sbjct: 745 LNRRISEAQLNDIEIASVDSFQGREKDFIIFSTVRSNEISDIGFLSIPQRLNVSITRAKY 804
Query: 638 HVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDP 684
+ VV + T+ N L+ + + H + + + ++P
Sbjct: 805 GLVVVGNPETLMQNPLWCAYLQFFQNNNVLVHGQLENLKEYPIKLEP 851
>gi|336403156|ref|ZP_08583876.1| hypothetical protein HMPREF0127_01189 [Bacteroides sp. 1_1_30]
gi|335946894|gb|EGN08690.1| hypothetical protein HMPREF0127_01189 [Bacteroides sp. 1_1_30]
Length = 645
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 140/450 (31%), Positives = 215/450 (47%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 221 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 280
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 281 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 334
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 335 RMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFSTLFIDEAAQALEAAC 394
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 395 WIAIRKADRVILAGDHCQLPPTIKCIEASRGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 453
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+ I + S Y G L ++ V L DTP WI +
Sbjct: 454 ETIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 495
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 496 -DFHEDFVGE-SFGRINKQEANLLLQELETYI-ERIGKERILDERIDFGLISPYKAQVQY 552
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 553 LRGKIKGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 612
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 613 TRARMKLVILGDTSTLAKHPFYKRLMLFIK 642
>gi|327312657|ref|YP_004328094.1| hypothetical protein HMPREF9137_0361 [Prevotella denticola F0289]
gi|326944641|gb|AEA20526.1| conserved hypothetical protein [Prevotella denticola F0289]
Length = 639
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 213/451 (47%), Gaps = 64/451 (14%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
++ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+GNP R
Sbjct: 197 VVHGPPGTGKTTTLVEAINETLMRESQVLVCAQSNMAVDWISEKLIDRGINVLRIGNPTR 256
Query: 315 ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAA-GIRQLLKQLGKT 373
++ K LG + K + ++ + S +RK +R+ + + Q + +L
Sbjct: 257 VN----DKMLGFTYERKFEAH-PDYPQLWS-IRKAIRELRNNRKRGSESYHQKMDRLKSR 310
Query: 374 LKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------------VGK 415
+ E + A+V+ +T GA ++ ++ T +
Sbjct: 311 ATELEIRIHTSLFGEARVIASTLVGAGSRVMEGQKFTTLFIDEAAQALEAACWIAIRRAS 370
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
R ILAGD CQL P + S AL GG+G +L+ER ++ + T L QYRMN+ I ++S
Sbjct: 371 RVILAGDHCQLPPTVKSIAALRGGLGKTLMERIVE-NKPEVVTLLKVQYRMNEEIMRFSS 429
Query: 476 KEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE----- 528
YGG + ++ + L D P V WI D + S S E
Sbjct: 430 DWFYGGQVEAAPQIKYRGILDYDNPMV---WIDTS-----DDTMTAASGSTASEGNQTSV 481
Query: 529 ----------HLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSA------IAVQSPY 570
H G+ SF N+GEAE+ + + + + SPY
Sbjct: 482 PSVEDKEASFHEQFVGS-SFGRINKGEAELTLKTLKDYFTKIGRQRVLDERIDVGIISPY 540
Query: 571 VAQVQHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
AQVQ+LR + P + V V T+D FQG+E D ++IS+VRSN G +GFL D R
Sbjct: 541 RAQVQYLRSLIKKREFFKPYRSLVSVNTVDGFQGQERDVILISLVRSNEEGQIGFLRDLR 600
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARL 657
RMNVAITRA + ++ + T+ + F +L
Sbjct: 601 RMNVAITRARMKLIILGNVRTMTRHPFYKKL 631
>gi|153808854|ref|ZP_01961522.1| hypothetical protein BACCAC_03154 [Bacteroides caccae ATCC 43185]
gi|149128680|gb|EDM19898.1| putative DNA helicase [Bacteroides caccae ATCC 43185]
Length = 647
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 146/455 (32%), Positives = 219/455 (48%), Gaps = 76/455 (16%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 221 RDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWISEKLVDRGVPVLRIG 280
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA 360
NP R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 281 NPTR-------------VNDKMLSFTYERRFESHPAYPELWGIRKSIRETGSRMRKGSYS 327
Query: 361 A--GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL---- 412
G+R + +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 328 EREGMRSRMSRLRDRATELEIQINTDLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAA 387
Query: 413 ------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
R ILAGD CQL P I +A G+ +L+E+ +H+ A L
Sbjct: 388 QALEAACWIAIRKADRVILAGDHCQLPPTIKCIEAARSGLDHTLMEKV--VHKKPSAVSL 445
Query: 461 -TTQYRMNDAIASWASKEMYGGSLISSSTVA--SHLLVDTPFVKPTWITQCPLLLLDTRL 517
QYRM+++I + S+ Y G L ++ V S L DTP WI + D
Sbjct: 446 LKMQYRMHESIMRFPSEWFYHGELEAAPEVRYRSILDFDTPM---NWIDTSEM---DFHE 499
Query: 518 PYGSLSLG----CEEHLDLAGTGSFYNE-GEAEIVVHHV-FSLICAGVSPSAIAVQSPYV 571
+ S G E +L L ++ N G+A I+ + F LI SPY
Sbjct: 500 EFVGESFGRINKQEANLLLQELEAYINRIGKARILDEKIDFGLI------------SPYK 547
Query: 572 AQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
AQVQ+LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RR
Sbjct: 548 AQVQYLRSKIKVSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRR 607
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
MNVAITRA + ++ D+ T+ + F RL+ I+
Sbjct: 608 MNVAITRARMKLVILGDAVTLTKHPFYKRLMSFIK 642
>gi|345518256|ref|ZP_08797710.1| hypothetical protein BSFG_02007 [Bacteroides sp. 4_3_47FAA]
gi|254835551|gb|EET15860.1| hypothetical protein BSFG_02007 [Bacteroides sp. 4_3_47FAA]
Length = 630
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 145/467 (31%), Positives = 223/467 (47%), Gaps = 75/467 (16%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
+++Q++A+ ++ K + I+ GPPGTGKT L E I + + +V+V A +N AVD +
Sbjct: 193 NNTQEEAVNKVMHAK-DVAIVHGPPGTGKTTTLVEAIYETLHRENQVMVCAQSNMAVDWI 251
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRK 348
EKL D G+ ++R+GNP R V K+ +F E FE +RK
Sbjct: 252 SEKLVDRGVPVLRIGNPTR-------------VNDKMLAFTYERRFESHPDYPQLWSIRK 298
Query: 349 DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKE---TVKEVL-SSAQVVLATNTGAADPLI 404
+R+ L S R+ ++Q +LK + E V E L A+V+ T +A+ ++
Sbjct: 299 AIRE-LYGRSRKGAERENIRQKINSLKDRATELEIRVNEALFGEARVIACTLVSSANRIL 357
Query: 405 --RRLDTFDL----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLE 446
R+ T + R ILAGD CQL P I +A GG+ +L++
Sbjct: 358 TGRKFSTLFIDEAAQALEPACWIAIRKADRVILAGDYCQLPPTIKCMEAARGGLDRTLMQ 417
Query: 447 RAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVA--SHLLVDTPFVKPTW 504
A ++ L QYRMND I ++S+ Y G L S+ V S L DTP W
Sbjct: 418 EIADNKPDTVSL-LKVQYRMNDEIMRFSSEWFYQGELKSAPEVKYRSILDYDTPI---EW 473
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA- 563
I + + C E G N+ EA + + + + I
Sbjct: 474 I--------------NTEGMECNEEFVGESFGRI-NKEEAALSISQLTNYINKIGKDRFL 518
Query: 564 -----IAVQSPYVAQVQHLRE--RLDDL--PEAAGVEVATIDSFQGREADAVIISMVRSN 614
+ + SPY AQVQ+LR+ + D P + + T+D FQG+E D ++IS+VR+N
Sbjct: 519 EERIDVGLISPYKAQVQYLRQLIKRDAFFKPYRHLITINTVDGFQGQERDVILISLVRAN 578
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
G +GFL D RRMNVAITRA + ++ D+ST+ + F +L +I
Sbjct: 579 EEGQIGFLNDLRRMNVAITRARMKLIILGDASTLTKHPFYKKLYEYI 625
>gi|160885310|ref|ZP_02066313.1| hypothetical protein BACOVA_03309 [Bacteroides ovatus ATCC 8483]
gi|156109660|gb|EDO11405.1| putative DNA helicase [Bacteroides ovatus ATCC 8483]
Length = 649
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 216/450 (48%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 225 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 284
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 285 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 338
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 339 RMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFSTLFIDEAAQALEAAC 398
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 399 WIAIRKADRVILAGDHCQLPPTIKCIEASCGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 457
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+AI + S Y G L ++ V L DTP WI +
Sbjct: 458 EAIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 499
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 500 -DFHEDFVGE-SFGRINKQEANLLLQELKTYI-ERIGKERILDERIDFGLISPYKAQVQY 556
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 557 LRGKIKGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 616
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 617 TRARMKLVILGDASTLTKHPFYKRLMLFIK 646
>gi|423220918|ref|ZP_17207412.1| hypothetical protein HMPREF1061_04185 [Bacteroides caccae
CL03T12C61]
gi|392622396|gb|EIY16524.1| hypothetical protein HMPREF1061_04185 [Bacteroides caccae
CL03T12C61]
Length = 647
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 146/455 (32%), Positives = 219/455 (48%), Gaps = 76/455 (16%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 221 RDVAIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWISEKLVDRGVPVLRIG 280
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA 360
NP R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 281 NPTR-------------VNDKMLSFTYERRFESHPAYPELWGIRKSIRETGSRMRKGSYS 327
Query: 361 A--GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL---- 412
G+R + +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 328 EREGMRSRMSRLRDRATELEIQINTDLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAA 387
Query: 413 ------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
R ILAGD CQL P I +A G+ +L+E+ +H+ A L
Sbjct: 388 QALEAACWIAIRKADRVILAGDHCQLPPTIKCIEAARSGLDHTLMEKV--VHKKPSAVSL 445
Query: 461 -TTQYRMNDAIASWASKEMYGGSLISSSTVA--SHLLVDTPFVKPTWITQCPLLLLDTRL 517
QYRM+++I + S+ Y G L ++ V S L DTP WI + D
Sbjct: 446 LKMQYRMHESIMRFPSEWFYHGELEAAPEVRYRSILDFDTPM---NWIDTSEM---DFHE 499
Query: 518 PYGSLSLG----CEEHLDLAGTGSFYNE-GEAEIVVHHV-FSLICAGVSPSAIAVQSPYV 571
+ S G E +L L ++ N G+A I+ + F LI SPY
Sbjct: 500 EFVGESFGRINKQEANLLLQELEAYINRIGKARILDEKIDFGLI------------SPYK 547
Query: 572 AQVQHLRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRR 627
AQVQ+LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RR
Sbjct: 548 AQVQYLRSKIKVSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRR 607
Query: 628 MNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
MNVAITRA + ++ D+ T+ + F RL+ I+
Sbjct: 608 MNVAITRARMKLVILGDAVTLTKHPFYKRLMSFIK 642
>gi|393786855|ref|ZP_10374987.1| hypothetical protein HMPREF1068_01267 [Bacteroides nordii
CL02T12C05]
gi|392658090|gb|EIY51720.1| hypothetical protein HMPREF1068_01267 [Bacteroides nordii
CL02T12C05]
Length = 634
Score = 172 bits (435), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 146/502 (29%), Positives = 237/502 (47%), Gaps = 67/502 (13%)
Query: 204 LFGDKEDVTWLEENDLADWSEV----------KLDGIMGKTFDDSQKKAIALGLNKKRPL 253
+F EDV + N LA+ + +L + + +Q++A+ L K +
Sbjct: 151 MFEALEDVIRAKNNRLAELRDTLLGTLSVHQRELYPVRFPWLNSTQEEAVNKVLCTK-DV 209
Query: 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPA 313
I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 210 AIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWISEKLVDRGVPVLRIGNPT 269
Query: 314 RISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGI-RQLLKQLGK 372
R++ K L + + S A E +RK +R+ + I R+ ++
Sbjct: 270 RVN----DKMLSFTYERRFESHPAYTE--LWGIRKSIREMSGRIRKGSHIERENMRNHIS 323
Query: 373 TLKKKEKET---VKEVLSSAQVVLATNTGAADPLI---RRLDTFDL-------------- 412
L+ + E + E L S+ V+A+ +++ I RR T +
Sbjct: 324 HLRDRATELEILINEALFSSTRVVASTLVSSNHRILNGRRFSTLFIDEAAQALEAACWIA 383
Query: 413 --VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
R I AGD CQL P I +A GG+ +L+E+ AT ++ + L QYRMN++I
Sbjct: 384 IRKTDRVIFAGDHCQLPPTIKCIEAARGGLNHTLMEKVAT-NKPSSVSLLKVQYRMNESI 442
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ S+ Y L S+ + ++D P++ +DT + C E
Sbjct: 443 MRFPSEWFYNNQLESAPEIRQRGILDF---------DTPMIWIDTS------EMECHEEF 487
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ------SPYVAQVQHLRERLDDL 584
G N+ EA +++ + S I + Q SPY AQVQ+LR ++
Sbjct: 488 VGESFGRI-NKPEANLLLQELESYIQKIGENRVLDEQIDFGLISPYKAQVQYLRNKIKSS 546
Query: 585 PEAAG----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+ V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITRA +
Sbjct: 547 SFFRRFRPLITVNTVDGFQGQERDVIFISLVRANESGQIGFLNDLRRMNVAITRARMKLV 606
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
++ +++T+ +TF +L+ +I+
Sbjct: 607 ILGNAATLIKHTFYHKLMEYIQ 628
>gi|345507626|ref|ZP_08787273.1| hypothetical protein BSAG_02536 [Bacteroides sp. D1]
gi|345455366|gb|EEO50825.2| hypothetical protein BSAG_02536 [Bacteroides sp. D1]
Length = 645
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 140/450 (31%), Positives = 215/450 (47%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 221 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 280
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 281 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 334
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 335 RMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAAQALEAAC 394
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 395 WIAIRKADRVILAGDHCQLPPTIKCIEASRGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 453
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+ I + S Y G L ++ V L DTP WI +
Sbjct: 454 ETIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 495
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 496 -DFHEDFVGE-SFGRINKQEANLLLQELETYI-ERIGKERILDERIDFGLISPYKAQVQY 552
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 553 LRGKIKGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 612
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 613 TRARMKLVILGDTSTLAKHPFYKRLMLFIK 642
>gi|319643934|ref|ZP_07998509.1| helicase [Bacteroides sp. 3_1_40A]
gi|317384458|gb|EFV65425.1| helicase [Bacteroides sp. 3_1_40A]
Length = 630
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 141/475 (29%), Positives = 224/475 (47%), Gaps = 91/475 (19%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
+++Q++A+ ++ K + I+ GPPGTGKT L E I + + +V+V A +N AVD +
Sbjct: 193 NNTQEEAVNKVMHAK-DVAIVHGPPGTGKTTTLVEAIYETLHRENQVMVCAQSNMAVDWI 251
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
EKL D G+ ++R+GNP R V K+ +F E ++ + D Q
Sbjct: 252 SEKLVDRGVPVLRIGNPTR-------------VNDKMLAFTYE---RRFESHPDYPQLW- 294
Query: 356 DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSS-------------------AQVVLATN 396
S+ IR+L G++ K E+E +++ ++S A+V+ T
Sbjct: 295 --SIRKAIREL---YGRSRKGAERENIRQKINSLKDRATELEIRINEALFGEARVIACTL 349
Query: 397 TGAADPLI--RRLDTFDL----------------VGKRCILAGDQCQLAPVILSRKALEG 438
+A+ ++ R+ T + R ILAGD CQL P I +A G
Sbjct: 350 VSSANRILTGRKFSTLFIDEAAQALEPACWIAIRKADRVILAGDYCQLPPTIKCMEAARG 409
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVA--SHLLVD 496
G+ +L++ A ++ L QYRMND I ++S+ Y G L S+ V S L D
Sbjct: 410 GLDRTLMQEIADNKPDTVSL-LKVQYRMNDEIMRFSSEWFYQGELKSAPEVKYRSILDYD 468
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
TP WI + + C E G N+ EA + + + + I
Sbjct: 469 TPI---EWI--------------NTEGMECNEEFVGESFGRI-NKEEAALSISQLTNYIN 510
Query: 557 AGVSPSA------IAVQSPYVAQVQHLRE--RLDDL--PEAAGVEVATIDSFQGREADAV 606
+ + SPY AQVQ+LR+ + D P + + T+D FQG+E D +
Sbjct: 511 KIGKDRFLEERIDVGLISPYKAQVQYLRQLIKRDAFFKPYRHLITINTVDGFQGQERDVI 570
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+IS+VR+N G +GFL D RRMNVAITRA + ++ D+ST+ + F +L +I
Sbjct: 571 LISLVRANEEGQIGFLNDLRRMNVAITRARMKLIILGDASTLTKHPFYKKLYEYI 625
>gi|262407014|ref|ZP_06083563.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294805767|ref|ZP_06764646.1| putative DNA helicase [Bacteroides xylanisolvens SD CC 1b]
gi|262355717|gb|EEZ04808.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294447090|gb|EFG15678.1| putative DNA helicase [Bacteroides xylanisolvens SD CC 1b]
Length = 649
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 140/450 (31%), Positives = 215/450 (47%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 225 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 284
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 285 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 338
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 339 RMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAAQALEAAC 398
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 399 WIAIRKADRVILAGDHCQLPPTIKCIEASRGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 457
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+ I + S Y G L ++ V L DTP WI +
Sbjct: 458 ETIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 499
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 500 -DFHEDFVGE-SFGRINKQEANLLLQELETYI-ERIGKERILDERIDFGLISPYKAQVQY 556
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 557 LRGKIKGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 616
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 617 TRARMKLVILGDTSTLAKHPFYKRLMLFIK 646
>gi|167384498|ref|XP_001736978.1| nonsense-mediated mRNA decay protein [Entamoeba dispar SAW760]
gi|165900437|gb|EDR26756.1| nonsense-mediated mRNA decay protein, putative [Entamoeba dispar
SAW760]
Length = 937
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 139/466 (29%), Positives = 225/466 (48%), Gaps = 62/466 (13%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+ L +IQGPPGTGKT I+ VQ G++VLV AP+N AVD + K+ + G+ ++R
Sbjct: 416 KQLSLIQGPPGTGKTVTSATIVYHVVQSNPGKKVLVCAPSNIAVDQLGIKIIETGVKVIR 475
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
V + +R +A +SL + L + + E +K ++ L Q KDD + I
Sbjct: 476 VYSKSR---ELAEESLHDY---SLKTLMIEQLKKDKEMFL-LYQDYKDDPDSLDI----- 523
Query: 369 QLGKT-LKKKEKETVKEVLSSAQVVLATNTGAADP----LIRRLDT-------------- 409
+ KT ++K+ E +L V+ T GA D ++ +DT
Sbjct: 524 -VNKTAIQKRINEIELALLRETDVICCTCCGALDNRLNGILEHIDTVLIDESTQADEPEC 582
Query: 410 ---FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
+ K+ L GD CQL P++ S +A + G+G+ + R L G +L QYRM
Sbjct: 583 LICLNNSVKQLFLVGDHCQLGPILNSSRAKKNGLGLPMFSRLLQL--GHEPYRLQFQYRM 640
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC-PLLLL--DTRLPYGSLS 523
+ ++ ++S+ Y G L + T P +K W Q P++ + + + YGS
Sbjct: 641 HPCLSEFSSQTFYDGVLQNGVTALERQF---PSLKYFWFKQNKPMMFIAANGKESYGS-- 695
Query: 524 LGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD- 582
GT S+ N+ E I+ + ++ V PS I V +PY+AQ Q + RL
Sbjct: 696 ---------NGT-SYLNDEEVFIIEQIIIKMLVNKVDPSQIGVITPYIAQKQAIISRLSL 745
Query: 583 --DLPEAA--GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
+ EA +E+A++DSFQGRE D +I S VRSN + +GFL +R+NV+ITRA
Sbjct: 746 NRRVSEAQLNDIEIASVDSFQGREKDFIIFSTVRSNEISDIGFLSIPQRLNVSITRAKYG 805
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDP 684
+ VV + T+ N L+ + + H + + + ++P
Sbjct: 806 LVVVGNPETLMQNPLWCAYLQFFQNNNVLVHGQLENLKEYPIKLEP 851
>gi|71417104|ref|XP_810474.1| regulator of nonsense transcripts 1 [Trypanosoma cruzi strain CL
Brener]
gi|70875009|gb|EAN88623.1| regulator of nonsense transcripts 1, putative [Trypanosoma cruzi]
Length = 839
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 188/625 (30%), Positives = 280/625 (44%), Gaps = 107/625 (17%)
Query: 84 LGGMHLVLFRVEGNHRLPPTT--LSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTI 141
GG HL L + +LPP+ L GD + V S ++ LGE+
Sbjct: 244 FGGKHLFLLK-----QLPPSDVGLRCGDHASIWVKGSSRLLNGVVVEIGKSQLGEEEVIF 298
Query: 142 SV-ALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAA 200
V E +++ S R++ D+ + +R C AL L+ + + S
Sbjct: 299 EVKTYEIERARRALNEILAASTVSFRLE--YDSTSDQRKCHALNLMMTDW---SSLSAYL 353
Query: 201 VVTLFGDKEDVTWLEENDLADWSEVKLDGIMGK--TFDDSQKKAIALGLNKKRPLLIIQG 258
T+ G E+ +SEV ++ G+ + SQ A+ L + PL +IQG
Sbjct: 354 YFTILGRAEEAA-------KRFSEVDINLPRGRLSNLNSSQDTAVRTAL--RNPLTLIQG 404
Query: 259 PPGTGKTGLLKEIIARA-VQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISP 317
PPGTGKT I+ ++ ++LV AP+N AVD + E++S GL VR+ R
Sbjct: 405 PPGTGKTSTSVAIVLEVNLRIRSQILVCAPSNVAVDQLAERISAAGLKTVRLHAHYRELV 464
Query: 318 AVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKK 377
+ K LG L S V EF S R+ LRQ L+ LK G+ L ++
Sbjct: 465 PSSVKHLG------LDSQVEEFIASSSGNRR-LRQLLE-----------LKLAGEVLDEQ 506
Query: 378 EK----ETVKEV----LSSAQVVLATNTGAADPLIRRLDT--FDLV-------------- 413
E+ ++V+++ L A V+ T GAAD RRL F V
Sbjct: 507 EQKIYNDSVRDIEEALLGGADVICCTCIGAAD---RRLGKMRFQYVLIDEATQGTEPETL 563
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
K+ L GD CQL P++ S A G+ SL ER L G A +L QYRM+
Sbjct: 564 VPLVRGAKQVFLVGDHCQLRPLVFSLPAERAGLRRSLFER--LLMTGHRAVRLDVQYRMH 621
Query: 468 DAIASWASKEMYGGSLISSSTV----ASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
A++ + S + Y G+L + T AS + P+ PT P+ +T
Sbjct: 622 PALSLFPSDQFYEGTLQNGLTEEQRDASRVF---PWPDPTR----PIFFYNT-------- 666
Query: 524 LGCEEHLDLAGTGSFY-NEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRE-- 579
G EE L+ GS Y N EA + + LI G V P I V +PY Q +++
Sbjct: 667 TGSEE---LSANGSSYLNRAEAALTERIITKLIRDGKVKPDDIGVITPYGGQCRYVMNYL 723
Query: 580 -RLDDLPEAAG--VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R LP A VEV+++D+FQGRE + +I+S VRSN +GF+ D RR+NV+ITRA
Sbjct: 724 VRCGPLPRTAYERVEVSSVDAFQGREKEFIILSCVRSNHRQGIGFVVDWRRLNVSITRAK 783
Query: 637 KHVAVVCDSSTICHNTFLARLLRHI 661
+ + ++ + + LL H+
Sbjct: 784 RGLIIMGNVQLLSRYPAWHALLAHL 808
>gi|295084850|emb|CBK66373.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
Length = 649
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 216/450 (48%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 225 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 284
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 285 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 338
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 339 RMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFSTLFIDEAAQALEAAC 398
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 399 WIAIRKADRVILAGDHCQLPPTIKCIEASCGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 457
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+AI + S Y G L ++ V L DTP WI +
Sbjct: 458 EAIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 499
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 500 -DFHEDFVGE-SFGRINKQEANLLLQELETYI-ERIGKERILDERIDFGLISPYKAQVQY 556
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 557 LRGKIKGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 616
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 617 TRARMKLVILGDASTLTKHPFYKRLMLFIK 646
>gi|293373939|ref|ZP_06620281.1| putative DNA helicase [Bacteroides ovatus SD CMC 3f]
gi|292631160|gb|EFF49796.1| putative DNA helicase [Bacteroides ovatus SD CMC 3f]
Length = 649
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 211/445 (47%), Gaps = 56/445 (12%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 225 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 284
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQL 370
NP R++ + S + +S A + + KS R S G+R + +L
Sbjct: 285 NPTRVNDKMLSSTYERRFESHPA-YPELWGIHKSIREMGSRMRRGSYSEREGMRNRMSRL 343
Query: 371 GKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL---------------- 412
+ E + ++ SA+V+ +T + L+ RR T +
Sbjct: 344 RDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAAQALEAACWIAIR 403
Query: 413 VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM++AI
Sbjct: 404 KADRVILAGDHCQLPPTIKCIEASRGGLDHTLMEKVVQQKPSAVSL-LKVQYRMHEAIMQ 462
Query: 473 WASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ S Y G L ++ V L DTP WI + + H
Sbjct: 463 FPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM----------------DFHE 503
Query: 531 DLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQHLRERL 581
D G SF N+ EA +++ + + I + I + SPY AQVQ+LR ++
Sbjct: 504 DFVGE-SFGRINKQEANLLLQELETYI-ERIGKKRILDERIDFGLISPYKAQVQYLRGKI 561
Query: 582 DD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITRA
Sbjct: 562 KGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAITRARM 621
Query: 638 HVAVVCDSSTICHNTFLARLLRHIR 662
+ ++ D+ST+ + F RL+ I+
Sbjct: 622 KLVILGDASTLAKHPFYKRLMLFIK 646
>gi|405953739|gb|EKC21342.1| Regulator of nonsense transcripts 1 [Crassostrea gigas]
Length = 1108
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 208/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ V+Q +VLV AP+N AVD + EK+ GL +VR
Sbjct: 467 QRPLSLIQGPPGTGKTVTSATIVYHLVKQNNGQVLVCAPSNIAVDQLTEKIHKTGLKVVR 526
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDSLAAGIRQL 366
+ +R E + S ++ + + + +L+ Q LKD++ +L
Sbjct: 527 LCAKSR-----------EAIDSPVSFLALHNQIRNMESVPELQKLQQLKDET-----GEL 570
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
K + +K+ KE+L A V+ T G DP + ++ ++
Sbjct: 571 SSTDEKRYRSLKKQCEKELLQHADVICCTCVGTGDPRLAKMQFRSVLIDESTQATEPECM 630
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
++ IL GD CQL PV++ +KA G+ SL ER L G+ +L QYRM+
Sbjct: 631 IPVVLGCRQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL--GIRPIRLQVQYRMH 688
Query: 468 DAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
A++++ S Y GSL + + +D P+ + P+ T
Sbjct: 689 PALSAFPSNIFYEGSLQNGVAPGDRVRKGLDIPWPQ----GDKPMFFYTT---------S 735
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V + + V P I + +PY Q ++ + +
Sbjct: 736 GQEEISSSGT-SYLNRTEAANVEKIATRFLRSNVKPEQIGIITPYEGQRAYIVQYMQYSG 794
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+ +EVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA +
Sbjct: 795 SLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPRRLNVALTRAKYGII 854
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 855 IVGNPKVLSKQPLWNHLLTYYK 876
>gi|423215342|ref|ZP_17201869.1| hypothetical protein HMPREF1074_03401 [Bacteroides xylanisolvens
CL03T12C04]
gi|392691910|gb|EIY85150.1| hypothetical protein HMPREF1074_03401 [Bacteroides xylanisolvens
CL03T12C04]
Length = 645
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 140/450 (31%), Positives = 215/450 (47%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 221 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 280
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 281 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 334
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 335 RMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAAQALEAAC 394
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 395 WIAIRKADRVILAGDHCQLPPTIKCIEASRGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 453
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+ I + S Y G L ++ V L DTP WI +
Sbjct: 454 ETIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 495
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 496 -DFHEDFVGE-SFGRINKQEANLLLQELETYI-ERIGKERILDERIDFGLISPYKAQVQY 552
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 553 LRGKIKGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 612
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 613 TRARMKLVILGDASTLAKHPFYKRLMLFIK 642
>gi|150004508|ref|YP_001299252.1| helicase [Bacteroides vulgatus ATCC 8482]
gi|149932932|gb|ABR39630.1| putative helicase [Bacteroides vulgatus ATCC 8482]
Length = 630
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 141/475 (29%), Positives = 224/475 (47%), Gaps = 91/475 (19%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
+++Q++A+ ++ K + I+ GPPGTGKT L E I + + +V+V A +N AVD +
Sbjct: 193 NNTQEEAVNKVMHAK-DVAIVHGPPGTGKTTTLVEAIYETLHRENQVMVCAQSNMAVDWI 251
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
EKL D G+ ++R+GNP R V K+ +F E ++ + D Q
Sbjct: 252 SEKLVDRGVPVLRIGNPIR-------------VNDKMLAFTYE---RRFESHPDYPQLW- 294
Query: 356 DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSS-------------------AQVVLATN 396
S+ IR+L G++ K E+E +++ ++S A+V+ T
Sbjct: 295 --SIRKAIREL---YGRSRKGAERENIRQKINSLKDRATELEIRINEALFGEARVIACTL 349
Query: 397 TGAADPLI--RRLDTFDL----------------VGKRCILAGDQCQLAPVILSRKALEG 438
+A+ ++ R+ T + R ILAGD CQL P I +A G
Sbjct: 350 VSSANRILTGRKFSTLFIDEAAQALEPACWIAIRKADRVILAGDYCQLPPTIKCMEAARG 409
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVA--SHLLVD 496
G+ +L++ A ++ L QYRMND I ++S+ Y G L S+ V S L D
Sbjct: 410 GLDRTLMQEIADNKPDTVSL-LKVQYRMNDEIMRFSSEWFYQGELKSAPEVKYRSILDYD 468
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
TP WI + + C E G N+ EA + + + + I
Sbjct: 469 TPI---EWI--------------NTEGMECNEEFVGESFGRI-NKEEAALSISQLTNYIN 510
Query: 557 AGVSPSA------IAVQSPYVAQVQHLRE--RLDDL--PEAAGVEVATIDSFQGREADAV 606
+ + SPY AQVQ+LR+ + D P + + T+D FQG+E D +
Sbjct: 511 KIGKDRFLEERIDVGLISPYKAQVQYLRQLIKRDAFFKPYRHLITINTVDGFQGQERDVI 570
Query: 607 IISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+IS+VR+N G +GFL D RRMNVAITRA + ++ D+ST+ + F +L +I
Sbjct: 571 LISLVRANEEGQIGFLNDLRRMNVAITRARMKLIILGDASTLTKHPFYKKLYEYI 625
>gi|336416735|ref|ZP_08597067.1| hypothetical protein HMPREF1017_04175 [Bacteroides ovatus
3_8_47FAA]
gi|335937173|gb|EGM99077.1| hypothetical protein HMPREF1017_04175 [Bacteroides ovatus
3_8_47FAA]
Length = 645
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 141/450 (31%), Positives = 216/450 (48%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+G
Sbjct: 221 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVPVLRIG 280
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC---LKDDSLA--AGIRQ 365
NP R++ K L + + S A E +RK +R+ ++ S + G+R
Sbjct: 281 NPTRVN----DKMLSSTYERRFESHPAYPE--LWGIRKSIREMGSRMRRGSYSEREGMRN 334
Query: 366 LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------- 412
+ +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 335 RMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFSTLFIDEAAQALEAAC 394
Query: 413 -----VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
R ILAGD CQL P I +A GG+ +L+E+ ++ L QYRM+
Sbjct: 395 WIAIRKADRVILAGDHCQLPPTIKCIEASCGGLDHTLMEKVVQQKPSAVSL-LKVQYRMH 453
Query: 468 DAIASWASKEMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
+AI + S Y G L ++ V L DTP WI +
Sbjct: 454 EAIMQFPSDWFYHGELEAAPEVRYRGILDFDTPM---NWIDTSEM--------------- 495
Query: 526 CEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI-------AVQSPYVAQVQH 576
+ H D G SF N+ EA +++ + + I + I + SPY AQVQ+
Sbjct: 496 -DFHEDFVGE-SFGRINKQEANLLLQELETYI-ERIGKERILDERIDFGLISPYKAQVQY 552
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAI
Sbjct: 553 LRGKIKGSSFLRPFRSLITVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAI 612
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ D+ST+ + F RL+ I+
Sbjct: 613 TRARMKLVILGDASTLTKHPFYKRLMLFIK 642
>gi|340504626|gb|EGR31053.1| upf1 regulator of nonsense transcripts, putative [Ichthyophthirius
multifiliis]
Length = 928
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 141/451 (31%), Positives = 212/451 (47%), Gaps = 73/451 (16%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ----GER--VLVTAPTNAAVDNMVEKLSDVG 303
++PL +IQGPPGTGKT II VQ G+R +LV AP+N VD + E++ G
Sbjct: 333 QQPLCLIQGPPGTGKTFTSTAIIYHLVQNIKRTGQRGQILVCAPSNIVVDQLAERMHYAG 392
Query: 304 LNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAA 361
L +VR+ + +R +S +V +L V+S L E +K L +D + D
Sbjct: 393 LKVVRMCSKSREMVSSSVEFLTLHNQVRS-LGHGEYEEMQKLLTLMEDQGEL---DHQDE 448
Query: 362 GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------- 413
+ LK+ G+ KE+L +A+V+ +T +ADP ++ F V
Sbjct: 449 DVYYSLKRQGE----------KEILQNAEVICSTCISSADPRLKEF-RFKHVLIDEATQA 497
Query: 414 ------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLT 461
K IL GD QL PV+ R G+ SL ER ++ GV T+L
Sbjct: 498 IEPECLLPLLKGAKHAILVGDHRQLGPVVTCRDTANAGLNKSLFERLVSM--GVRPTRLQ 555
Query: 462 TQYRMNDAIASWASKEMYGGSLISSSTVASHLLV-DTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ ++ + S Y G+L++ T D P+ PL+ L+
Sbjct: 556 VQYRMHPDLSIFPSNTFYEGTLLNGVTFNDRQFHGDFPWPNKN----KPLMFLN------ 605
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
S G EE + +GT S+ N E ++ V+ LI V P I + +PY Q R
Sbjct: 606 --SCGVEE-ISSSGT-SYLNRQETMLIEEIVYKLIKGKVRPDQIGIITPYKGQ----RFY 657
Query: 581 LDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
+ D + G +E ++D FQGRE D +IIS VRSN +GFL D+RR+NVA
Sbjct: 658 IGDYLQKNGKLNPTLYQEIECCSVDGFQGREKDYIIISCVRSNESQGIGFLTDARRLNVA 717
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
ITRA + +V ++ + + LL ++
Sbjct: 718 ITRARYGLIIVGNAKVLARDNLWNNLLNFMK 748
>gi|388580348|gb|EIM20663.1| hypothetical protein WALSEDRAFT_54922 [Wallemia sebi CBS 633.66]
Length = 941
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 214/458 (46%), Gaps = 65/458 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT ++ + +VLV AP+N AVD
Sbjct: 373 LNHSQMYAVKSVLQK--PLSLIQGPPGTGKTVTSASVVYHLSKMNPGQVLVCAPSNVAVD 430
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL VR+ +R AV S + ++A+ E +K + K+
Sbjct: 431 QLCEKIHLTGLKTVRLTAKSR--EAVDSPISFLTLHEQVANSTHHIELQKLFMLKN---- 484
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD----- 408
+ L++ + K L + +K E+L++A V+ T GA DP + +L
Sbjct: 485 -EQGELSSSDERKFKTLTRVCEK-------EILNAADVICCTCVGAGDPRLSKLKFRTVL 536
Query: 409 ------------TFDLV--GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
T L+ K+ +L GD QL PVI+++KA G+ SL ER L G
Sbjct: 537 IDEATQAAEPECTIPLIMGCKQAVLVGDHQQLGPVIMNKKAARAGLTQSLFERLVML--G 594
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ + S Y G+L + T L + F P I P+
Sbjct: 595 NRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWP--IPDTPMFFYQ 652
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
+LG EE + +GT SF N EA V AGV P+ I + +PY Q
Sbjct: 653 --------NLGQEE-ISSSGT-SFLNRTEASNCEKIVTKFFKAGVVPAQIGIVTPYEGQR 702
Query: 575 QH----------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
+ L++ L + VEVA++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 703 SYIVNYMQFNGALKKELYN-----QVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLSD 757
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA ++ + + + LL H +
Sbjct: 758 PRRLNVAMTRAKYGAVILGNPKILSKHPLWHHLLTHFK 795
>gi|396485924|ref|XP_003842291.1| similar to DNA helicase [Leptosphaeria maculans JN3]
gi|312218867|emb|CBX98812.1| similar to DNA helicase [Leptosphaeria maculans JN3]
Length = 607
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 170/580 (29%), Positives = 269/580 (46%), Gaps = 98/580 (16%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFRVEG-------NHRLPPTTLSPGDMVCVRVCDSRGACAT 124
I NL V S TGLGG +V ++ +P + GD+V V+ D A
Sbjct: 48 ILNLNVSSVRTGLGGKTVVELALDPAVVAKGEKPDIPEHGIRVGDIVAVQ--DQPSGSAK 105
Query: 125 SCIQGFVHNLGEDGC-------TISVALESRHGD-PTFSKLFGKSVRIDRIQGLADTLTY 176
+ + G +G + V L+ D P+ KL+ I LA+ +TY
Sbjct: 106 KTEKKELTKKGAEGVVLRVRRENVEVVLDKEDADVPSGGKLW--------IVKLANDVTY 157
Query: 177 ERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEV--KLDGIMGKT 234
+R + + LQK G P + LFG +DL D S KL+ ++
Sbjct: 158 KRMNQTMSRLQKFGDQDYTPFMR---VLFGQASPTPL--PSDLNDPSHPLHKLE-WKDQS 211
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+DSQK+AI L+ R + +I GPPGTGKT L E+I + ++Q R+LV P+N +VDN
Sbjct: 212 LNDSQKEAIRFALSS-REIALIHGPPGTGKTHTLIELILQLLKQNLRLLVCGPSNISVDN 270
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+VE+L+ + +VR+G+PAR+ P+V + SL + ++ A+ + + R + D ++ +
Sbjct: 271 IVERLASHKVPMVRLGHPARLLPSVLNHSLDVLTRTSEAAALVQDVRTEMDGKQASIRKT 330
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV- 413
++ I LK+L + +++EK V ++ ++VVLAT GA ++ + FD+V
Sbjct: 331 RNARERRQIYTELKELRQEYREREKGCVNNLVGGSKVVLATLHGAGGFHLKGQE-FDVVI 389
Query: 414 --------------------GKRCILAGDQCQLAPVILS--------------------- 432
+ +LAGD QL P I S
Sbjct: 390 VDEASQALEAQCWIPLLWVKAGKLVLAGDHLQLPPTIKSLHFRDKKKTMNNAQDAKKGKD 449
Query: 433 --RKALEGGIGV-------SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL 483
K +G + + +L +R LH + LTTQYRM++ I + + E+Y L
Sbjct: 450 EDAKKTDGTLRIQGMTLETTLFDRLLALHGPGIKRMLTTQYRMHETIMRFPADELYESKL 509
Query: 484 ISSSTVASHLLVDTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG------ 536
+++ V LL D P+ V+ T T+ PL+ DT+ G + E+ + G G
Sbjct: 510 VAADFVKERLLKDLPYEVQDTEDTREPLVFWDTQ--GGDFAEKAEDE-GVTGKGGKGMRL 566
Query: 537 --SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
S NEGEA +V HV +L+ AGV IAV +PY QV
Sbjct: 567 GDSKSNEGEAALVKMHVGNLVQAGVKAEDIAVVTPYNGQV 606
>gi|333910064|ref|YP_004483797.1| DNA helicase [Methanotorris igneus Kol 5]
gi|333750653|gb|AEF95732.1| DNA helicase [Methanotorris igneus Kol 5]
Length = 654
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 185/702 (26%), Positives = 312/702 (44%), Gaps = 132/702 (18%)
Query: 14 DEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTIC 73
+ + + +L+ ER E++F +EE+ + G +E+ I
Sbjct: 5 EHYVNKFMKLIEKERKYEMDFHREEIKRL-------------------GDKREEVGRAIL 45
Query: 74 NLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHN 133
+L LG + + R + RL +S GD+V + S+G S + G V
Sbjct: 46 HLKGRKLREELGSIIVRYGRKKPFKRL---EISVGDVVLI----SKGNPLHSDLFGNVVE 98
Query: 134 LGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHK 193
+G++ I+ D K K VRID + +T++R +AL N
Sbjct: 99 IGKNFIDIAF-------DEAPPKWAYKDVRIDL---YVNDITFKRMKKAL-----NKFRN 143
Query: 194 RNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPL 253
N + ++ ++E + +VK K ++SQK A+ L + + L
Sbjct: 144 INNKLVGIIL---------GIDEPRMGKEVKVKF---FDKNLNESQKNAVINAL-RAKDL 190
Query: 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVG--LNIVRVGN 311
+I GPPGTGKT + E+I + + +VL TA +N A DN++ LS +NIVR+G+
Sbjct: 191 YLIHGPPGTGKTRTITEVIIQECMRKNKVLATADSNIAADNILSNLSKYTKYINIVRIGH 250
Query: 312 PARISPAVASKSLG------------EIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
P RIS + SL + +K +++ + E ++ K + K R+ + D+ +
Sbjct: 251 PTRISKELIEHSLFYKVEKHEKYKAIKKIKEEMSKLMDERDKYKKPIPK-WRRGMSDEEI 309
Query: 360 AA---------GI-RQLLKQLGKTLKKKEK-------------ETVKEVLSSAQVVLATN 396
G+ R +LK + K +K EK E +KE++ A VV+ATN
Sbjct: 310 VIFSKLNKDVRGVPRDVLKSMAKWIKTNEKIKKLREKMKKIEEEIIKEIIRKADVVIATN 369
Query: 397 TGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALE 437
+ A + + FD+ K+ I+AGD QL P +LS +
Sbjct: 370 SMAGCDFLEGFE-FDVCVIDEGSQSMEPSALIPIVKSKKLIMAGDHKQLPPTVLSE---D 425
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT 497
+ +L ER + ++ L QYRMN+ I + +K Y L + +V S ++D
Sbjct: 426 EELKKTLFERLIKTYPK-FSSILKIQYRMNEKIMEFPNKAFYDNKLKAHDSVKSQTILD- 483
Query: 498 PFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA 557
+K I + +++ P + + +E D T S+YNE EA++V V +
Sbjct: 484 -LIKGVEIDEEDKYIINEE-PVVFIDVKGKEKRDKDST-SYYNEEEAKVVAKLVETFKKY 540
Query: 558 GVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
+ S I +PY AQV+ + +D +EV+T+D FQG+E + +IIS VR+
Sbjct: 541 NIPVSVI---TPYDAQVKLISNLCED------IEVSTVDGFQGKENEVIIISFVRTEKF- 590
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
GFL D RR+NVAITRA + + +V + N L++
Sbjct: 591 --GFLEDLRRLNVAITRAKRKLVIVGCKELLSQNETYKELVK 630
>gi|443896129|dbj|GAC73473.1| RNA helicase nonsense mRNA reducing factor [Pseudozyma antarctica
T-34]
Length = 1090
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 205/441 (46%), Gaps = 53/441 (12%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
K+PL +IQGPPGTGKT I+ + + VLV AP+N AVD + EK+ GL +VR
Sbjct: 498 KKPLSLIQGPPGTGKTVTSASIVYQLSKMNPGPVLVCAPSNVAVDQLTEKIHATGLKVVR 557
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ +R E + S + + +D +L++ ++ L +L
Sbjct: 558 LTAKSR-----------EALDSPIGFLTLHEQVANNDTHVELQKLIQ---LKNEQGELSS 603
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--------------- 413
+ K + KE+LS+A V+ T G DP + +++ ++
Sbjct: 604 SDERKYKALTRACEKEILSTADVICCTCVGCGDPRLSKINFRTVLVDEATQAAEPECMIP 663
Query: 414 ----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
K+ + GD QL PVI+++KA G+ SL ER L G +L QYRM+
Sbjct: 664 LVMGCKQVVFVGDHLQLGPVIMNKKAARAGLSQSLFERLIML--GNRPIRLEIQYRMHPC 721
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
++ + S Y G+L + T L F P + P++ +LG EE
Sbjct: 722 LSEFPSNMFYEGTLQNGITAQERLRAKVDFPWP--VPSLPMMFFQ--------NLGQEE- 770
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQHLRERLDDLP 585
+ +GT SF N EA V V AGV P I + +PY Q V H++
Sbjct: 771 ISSSGT-SFLNRTEASNVEKIVTRFFKAGVEPWQIGIVTPYEGQRSYIVNHMQLHGSLKK 829
Query: 586 E-AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
E VEVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA + ++ +
Sbjct: 830 ELYKEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLSDPRRLNVALTRARFGLVILGN 889
Query: 645 SSTICHNTFLARLLRHIRYFG 665
+ + LL H + G
Sbjct: 890 PKVLNKHPLWHYLLVHYKEKG 910
>gi|323454972|gb|EGB10841.1| hypothetical protein AURANDRAFT_22049 [Aureococcus anophagefferens]
Length = 1026
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 149/479 (31%), Positives = 223/479 (46%), Gaps = 64/479 (13%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNAAVDN 294
D + +A A+ +PL +IQGPPGTGKT I+ +QG +VLVTAP+N AVD
Sbjct: 410 DLNHSQAAAVRSVVTQPLSLIQGPPGTGKTVTSAAIVWHLAKQGMGQVLVTAPSNIAVDQ 469
Query: 295 MVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
+ EK+ GL +VR+ +R IS +V +L +++ +AE LRK +R
Sbjct: 470 LTEKIHATGLKVVRLCAKSREAISTSVDHLTLHTMLRDIDTPEIAE-------LRKLMR- 521
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI-------- 404
LK+D +L K +K T + +L +A V+ T A DP +
Sbjct: 522 -LKEDQ-----GELAPADEKQFRKLRANTERVLLKAADVICTTCACAGDPRLGGSRFRQV 575
Query: 405 -----------RRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
L L K+ +L GD QL PVI+ + A + G+ SL ER L
Sbjct: 576 LIDEATQATEPESLIPIVLGAKQLVLVGDHQQLGPVIMCKGAAKAGLTQSLYERLVAL-- 633
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP-FVKPTWITQCPLLL 512
G+ +L QYR + ++ + S Y G+L + + L P F P + P++
Sbjct: 634 GIRPIRLQVQYRSHPCLSEFPSAMFYEGTLQNGVSEGERDLEGEPRFPWPN--PEAPMMF 691
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
+ G EE + +GT SF N EA + V + G+ P I V +PY
Sbjct: 692 Y--------VCAGAEE-MSASGT-SFLNRSEAASIERLVTHYLKLGLDPDQIGVITPYEG 741
Query: 573 QVQHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLG 623
Q ++ + +AG VEVA++DSFQGRE D +I+S VRSN +GFL
Sbjct: 742 QRAYVVHHM----ASAGALRADVYERVEVASVDSFQGREKDVIILSCVRSNEHQGIGFLN 797
Query: 624 DSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGM 682
D RR+NVA+TRA + ++ + + + LL H + G V G+ S L +
Sbjct: 798 DPRRLNVALTRAKYGLVILGAARVLAQDALWHELLTHFKKLGCVAEGPLGNLKVSSLAL 856
>gi|171687455|ref|XP_001908668.1| hypothetical protein [Podospora anserina S mat+]
gi|170943689|emb|CAP69341.1| unnamed protein product [Podospora anserina S mat+]
Length = 827
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 218/805 (27%), Positives = 335/805 (41%), Gaps = 234/805 (29%)
Query: 72 ICNLFVVSTSTGLGGMHLV------LFRVEGNHRLPPTTLSPGDMVC------------- 112
+ NL V+S TGLGG +V F G+ LP + GD+V
Sbjct: 46 LTNLAVLSQRTGLGGKTVVEVGPDGAFSCSGD--LPEHGIRSGDIVLLAEQPAASGKKRE 103
Query: 113 VRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLAD 172
V+ + +G ++G V +G G + VA+E + V I + LAD
Sbjct: 104 VKELERKG------VKGVVTRVGRQG--LGVAVEEDGEGEGEVVGGDRRVWIVK---LAD 152
Query: 173 TLTYERNCEALMLLQKNGLHKRNPSIAA------VVTLFGDKEDVTWLEENDLADWSEVK 226
+T++R NG ++ +A + LFG E DL+ EV
Sbjct: 153 EVTWKR---------MNGTMEKMAKMAEGEYSYFMRVLFGLTTPSPVPE--DLSKDEEVG 201
Query: 227 LDGIMGKTFD----DSQKKAIALGLNKKRPLLIIQGPPG--------------------- 261
I K FD +SQK AI L K + + +I GPPG
Sbjct: 202 EGKI--KWFDTSLNESQKDAIRFAL-KSQEIALIHGPPGVSFFFFLVFFPFPFLYTNLPP 258
Query: 262 --TGKTGLLKEIIAR--AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISP 317
TGKT L E+I + A+ R+LV P+N +VDN+VE+LS + ++R+G+PAR+ P
Sbjct: 259 KKTGKTHTLIELILQLLALNSNSRILVCGPSNISVDNIVERLSPHKIPLIRLGHPARLLP 318
Query: 318 AVASKSLGEIVKSKLASFV-----AEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGK 372
+V + SL + ++ A + AE + K++ +RK + I LK+L K
Sbjct: 319 SVLNHSLDVLTRTSEAGAIVKDVRAEMDAKQASIRKT-----RSGKERKAIYADLKELRK 373
Query: 373 TLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------------- 413
+++EK+ V ++++ ++VVLAT G+ +R + FD+V
Sbjct: 374 EYRQREKKCVSDLVAKSKVVLATLHGSGGYQLRD-EKFDVVIIDEASQALEAQCWVALLS 432
Query: 414 GKRCILAGDQCQLAPVILSRKALE------------------------------------ 437
K+ I AGD QL P I S +
Sbjct: 433 AKKAICAGDHLQLPPTIKSLNSSSSSSFFSSSKTSSKNSSTSGEKKTAKTKKDTAASNTP 492
Query: 438 ------GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
+ +L +R +LH + LTTQYRM+++I + S E+Y G LI++ V +
Sbjct: 493 PTIPKGATLETTLFDRLLSLHGPKIKRMLTTQYRMHESIMRFPSDELYEGKLIAAEGVKA 552
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTG--SFY-----NE 541
LL P V+ T+ PL+ +DT+ P + EE G S Y NE
Sbjct: 553 RLLNQLPDVRDVDETREPLVFIDTQGGDFPEKTEDEEEEEEKKKKGVTKRSLYGDSKRNE 612
Query: 542 GEAEIVVHHVFSLI-CAGVSPSAIAVQSPYVAQV-------------------------- 574
GEA +V HV L+ GV +AV SPY AQV
Sbjct: 613 GEAMLVREHVRCLVEDGGVRAEDVAVVSPYNAQVCFSLTSIQAVTLELPGTDRTTMRSFV 672
Query: 575 -----QH---------LRER-------LDDLPEA-AGVEVATIDSFQGREADAVIISMVR 612
QH +R R L L E G+E+ ++D FQGRE +AVI+++VR
Sbjct: 673 IATSKQHPSLSFSPSRIRGRTWTRLALLAPLKEQYPGIELGSVDGFQGREKEAVIVTLVR 732
Query: 613 SNTLGAVGFLGDSRRMN---------------------VAITRACKHVAVVCDSSTICHN 651
SN+ G VGFL + RR+N VA+TRA + + V+ DS T+
Sbjct: 733 SNSDGEVGFLAEKRRLNGTFILFYSGGLVRVEMGVNARVAMTRAKRSLTVIGDSETVKKG 792
Query: 652 T-FLARLLRHIRYFGRVKHAEPGSF 675
+ FL + + + +++ + S
Sbjct: 793 SKFLKKWMEFLEENADLRYPDLASL 817
>gi|440750068|ref|ZP_20929312.1| dna-binding protein smubp-2 [Mariniradius saccharolyticus AK6]
gi|436481109|gb|ELP37290.1| dna-binding protein smubp-2 [Mariniradius saccharolyticus AK6]
Length = 642
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 139/478 (29%), Positives = 231/478 (48%), Gaps = 75/478 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
++SQ +A+ L + K + +I GPPGTGKT L I ++ +V+VTAP+NAAVD
Sbjct: 183 LNESQNQALGLVVATK-DVAVIHGPPGTGKTTTLVASIVETLKSVSQVMVTAPSNAAVDL 241
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+VEKL G+ +R+G+PAR+ + +++L +I + + + ++ +LRK +
Sbjct: 242 LVEKLVTQGIKTLRIGHPARVDEQILAQTLDAKIAQHESYKDLKRVKKSVDELRKLASKY 301
Query: 354 LKDDSLAAGI--RQLLKQLGKTLKKK---EKETVKEVLSSAQVVLATNTGAADPLI--RR 406
++ + R++L ++ + + E V ++ QVV T GAA ++ R+
Sbjct: 302 KRNYGQEERMQKRRMLDEVARARDEAAQLEDYIVYDIFQETQVVACTLVGAAHSMLDGRK 361
Query: 407 LDTFDL----------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
+ ++ ++AGD CQL P I S +A +GG+ +L E+
Sbjct: 362 FPVVFIDEAAQGLEPAVWIPVQKAQKVVMAGDHCQLPPTIKSYEAAQGGLAETLFEKVIK 421
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
+ L QYRM + IA ++S Y L ++ H L + P+
Sbjct: 422 RKPSA-SHMLNVQYRMPELIAGFSSDFFYRRDLHAAPNTRYHFLDEAE----------PV 470
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTG----------SFYNEGEAEIVVHHVFSLI----C 556
L E +D AG+G S +N EA+ + + SLI
Sbjct: 471 L----------------EFIDTAGSGFAEQTEEETFSTFNPEEAKFCLGQLESLIKRIGI 514
Query: 557 AGVSPSA--IAVQSPYVAQVQHLRERLDDLPEAAGV----EVATIDS---FQGREADAVI 607
A + +A I + +PY AQV+ E L + + E+ TIDS FQG+E D ++
Sbjct: 515 AKIKTAAWNIGLIAPYKAQVRKFNELLFESYNYPNLRSFSELLTIDSIDGFQGQERDIIL 574
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+S+VRSNT +GFL D+RRMNVA+TRA + + VV DS+T+ + F + ++ G
Sbjct: 575 LSLVRSNTKNEIGFLSDTRRMNVALTRAKRKLIVVGDSATLSAHPFYHAYIDYVESHG 632
>gi|406696583|gb|EKC99865.1| hypothetical protein A1Q2_05830 [Trichosporon asahii var. asahii
CBS 8904]
Length = 1018
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 221/456 (48%), Gaps = 56/456 (12%)
Query: 225 VKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE---R 281
+ ++G + SQ +AIA+ L+++ L ++QGPPGTGKT ++ E I Q +
Sbjct: 524 IAIEGDPRVPLNPSQTRAIAMMLSER--LSLVQGPPGTGKTRVIVETIKLLKQHWQIPHP 581
Query: 282 VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER 341
VLV A TN AVDN+VE L G+N VR G+P R+SP V + +L ++ A V R
Sbjct: 582 VLVCAHTNVAVDNLVEGLKTQGVNAVRFGSPDRVSPRVEAHTLEARIEQHPAYPVLNRAR 641
Query: 342 K-KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA 400
K L+ +L + L A +++ K G+ K + EVL A VV T A
Sbjct: 642 NSKESLQAELSENLAGPQREAKQKEIGKLNGRIYLLKRRLQA-EVLHEADVVCTTCLSAT 700
Query: 401 DPLIRRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
++ +D F V + + GD QL PVI+S A +GG+
Sbjct: 701 SRVLEVID-FPFVFLDEASMATEPLSIVPLTKGSAQVAIIGDHKQLPPVIVSEAAQQGGL 759
Query: 441 GVSLLERAATLHE-GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
G SL ER +HE V + L TQYRM+ +IA+++S+ Y G L + V VD
Sbjct: 760 GTSLFER--LIHEQAVPSIMLDTQYRMHPSIAAFSSEAFYNGQLKDGTVVDGQ--VDPVL 815
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG- 558
PT LL D SL+ + + S N EA V V L+ +
Sbjct: 816 HPPT----TAFLLPDGDS-SKSLTFLNHDFPESPQNRSIANHHEAGRVCDIVADLLASNP 870
Query: 559 -VSPSAIAVQSPYVAQVQHLRERL--DDL----------PEAA----GVEVATIDSFQGR 601
+ + I V +PY AQ++ + E L D+ PE A +E+ T+D F+GR
Sbjct: 871 DLKGADIGVIAPYSAQIRLITEFLTIDERRQRAFRQWLGPERAREIEDIEIRTVDGFEGR 930
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
E +I S VRSNT G +GFLGD RR+NV +TRA +
Sbjct: 931 EKSVIIFSTVRSNTGGFLGFLGDWRRLNVGLTRAKR 966
>gi|324500307|gb|ADY40148.1| Regulator of nonsense transcripts 1 [Ascaris suum]
Length = 1087
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 138/460 (30%), Positives = 216/460 (46%), Gaps = 77/460 (16%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ +A+ + L +RPL +IQGPPGTGKT I+ V+Q +VLV AP+N AVD
Sbjct: 436 LNHSQVQAVKMVL--QRPLSLIQGPPGTGKTVTSATIVYHLVRQTSGQVLVCAPSNIAVD 493
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R E + S +A + K +L +
Sbjct: 494 QLAEKIHRTGLKVVRLCAKSR-----------ETLDSPVAFLALHNQLKAVQGAAELHK- 541
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKE-------TVKEVLSSAQVVLATNTGAADPLIRR 406
++QL +++G+ E+ K++L +A V+ T AAD +
Sbjct: 542 ---------LQQLKEEIGELADADERRFRTLRMAKEKQLLGAADVICCTCVSAADNRLSH 592
Query: 407 L--------------DTFDLVG-----KRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+ + +V K+ +L GD CQL PVI+ +KA + G+ SL ER
Sbjct: 593 MRIKCVLIDESTQATEPEVMVAVVRGVKQLVLVGDHCQLGPVIMCKKAAKAGLSQSLFER 652
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
L G +L QYRM+ A++++ S Y G+L + T L + P +
Sbjct: 653 LVVL--GTRPIRLQVQYRMHPALSAFPSNVFYEGTLQNGVTQGERQLAGVDWQWP--VPD 708
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P++ YG +E L +GT S+ N EA V + AG+ P I +
Sbjct: 709 KPMMFWSC---YG------QEELSPSGT-SYLNRTEAANVEKVATRFLKAGLRPEQIGII 758
Query: 568 SPYVAQVQHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGA 618
+PY Q R + + G +EVA +D+FQGRE D +I++ VRSN
Sbjct: 759 TPYEGQ----RSYIVQFMQTQGALHSKLYLEMEVANVDAFQGREKDIIIVTCVRSNEHQG 814
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
+GFL DSRR+NVA+TRA V ++ ++ + + +LL
Sbjct: 815 IGFLNDSRRLNVALTRAKYGVIIIGNAKILSRHPLWNQLL 854
>gi|423285449|ref|ZP_17264331.1| hypothetical protein HMPREF1204_03869 [Bacteroides fragilis HMW
615]
gi|404578964|gb|EKA83682.1| hypothetical protein HMPREF1204_03869 [Bacteroides fragilis HMW
615]
Length = 634
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 148/513 (28%), Positives = 241/513 (46%), Gaps = 85/513 (16%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDG----------IMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV + N LA+ ++ L + + +Q+ A+ L K
Sbjct: 150 TMFEALEDVIRAKGNRLAELRDILLSKQPSRWRETYPVRFPWLNSTQEAAVNKVLCAK-D 208
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 209 VAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNP 268
Query: 313 ARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA-- 360
+R V K+ SF E FE S +RK +R+ ++ S +
Sbjct: 269 SR-------------VNDKMLSFTYERRFEGHPSYTELWGIRKSIREMGNRMRKSSYSER 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------ 412
R + L + + E + +++ S A+V+ +T + ++ RR T +
Sbjct: 316 EAARSRINHLRERATELEIQINEDLFSGARVIASTLVSSNHRILTGRRFTTLFIDEAAQA 375
Query: 413 ----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R I AGD CQL P I +A G+ +L+E+ A + ++ L
Sbjct: 376 LEAACWIAIRKADRVIFAGDHCQLPPTIKCIEAARNGLEQTLMEKVAANKQETVSL-LKV 434
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ +I ++S+ Y G L ++ V + ++D P+ +DT
Sbjct: 435 QYRMHQSIMQFSSEWFYQGELQAAPEVTNRGILDLDL---------PMSWIDTS------ 479
Query: 523 SLGCEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAIAVQ------SPYVAQV 574
E H + G SF N+ EA +++ + + I + + SPY AQV
Sbjct: 480 --EMEFHEEFVGE-SFGRINKPEANLLLQELEAYIRKIGEKRVLEERIDFGLISPYKAQV 536
Query: 575 QHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
Q+LR +L P + + + T+D FQG+E D + IS+VR+N G +GFL D RRMNV
Sbjct: 537 QYLRGKLKGCLFFRPFRSQITIHTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNV 596
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIRY 663
AITRA + ++ D+ T+ + F +L+ +IR+
Sbjct: 597 AITRARMKLVILGDAVTMSKHAFYKKLIGYIRH 629
>gi|393245688|gb|EJD53198.1| ATP dependent helicase [Auricularia delicata TFB-10046 SS5]
Length = 1072
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 217/460 (47%), Gaps = 69/460 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + +VLV AP+N AVD
Sbjct: 437 LNHSQMYAVKSVLQK--PLSLIQGPPGTGKTVTSASIVYHLAKMNHGQVLVCAPSNVAVD 494
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R A+ S + ++A+ + E L+K ++
Sbjct: 495 QLTEKIHATGLKVVRLTAKSR--EALDSSISFLTLHQQVANSTSHVE-----LQKLIQLK 547
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD-- 411
+ L++ + K L +T +K E+L++A V+ T GA D RL F
Sbjct: 548 NEQGELSSNDERKYKALVRTCEK-------EILAAADVICTTCVGAGD---LRLSKFKFR 597
Query: 412 --------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
L K+ +L GD QL PVI+++KA G+ SL ER +
Sbjct: 598 TVLIDEATQAAEPECMIPLVLGCKQAVLVGDHQQLGPVIMNKKAARAGLTQSLFERLVLI 657
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCP 509
G +L QYRM+ ++ + S Y G+L + T L VD P+ P P
Sbjct: 658 --GNRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWPAP----DTP 711
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
+ +LG EE + +GT SF N EA V V +GV PS I V +P
Sbjct: 712 MFFYQ--------NLGQEE-ISSSGT-SFLNRTEAANVEKIVTKFFKSGVVPSQIGVITP 761
Query: 570 YVAQVQHLRERLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
Y Q ++ + DL + +EVA++D+FQGRE D +I+S VRSN +GFL
Sbjct: 762 YEGQRSYIVNYMQFNGSLKKDLYKE--IEVASVDAFQGREKDYIILSCVRSNEHQGIGFL 819
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D RR+NVA+TRA V ++ + + + LL H +
Sbjct: 820 NDPRRLNVALTRAKYGVVILGNPKVLSKHPLWHYLLTHYK 859
>gi|410028927|ref|ZP_11278763.1| type III restriction enzyme, res subunit [Marinilabilia sp. AK2]
Length = 642
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 235/474 (49%), Gaps = 71/474 (14%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
+ + SQ++A+ L + + + II GPPGTGKT L ++ +++ ++VLV AP+NAAV
Sbjct: 181 ENLNPSQQEALGL-VASAKDVAIIHGPPGTGKTTTLVHAVSYSLEHNKQVLVCAPSNAAV 239
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER--KKSDLRKDL 350
D +VEKL + GL+ +R+G+PAR+ + S++L K L + +R KK+D + L
Sbjct: 240 DLLVEKLRERGLSTLRIGHPARVEDHILSQTLD--AKVALHDSYKDLKRLKKKADEFRKL 297
Query: 351 RQCLK-----DDSLAAGIRQLLKQLGKTLKKKEKETVKE-----VLSSAQVVLATNTGAA 400
Q K ++ + R+L ++ + K E E ++E + QV T GA+
Sbjct: 298 GQKYKRSFGPEERIQK--RRLFDEVNRL--KDEGEHLEEYIQYDIFQQTQVFATTLVGAS 353
Query: 401 DPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIG 441
+ ++ + F LV + ++AGD QL P I S +A G+
Sbjct: 354 NSALKGM-KFPLVFIDEAAQGLEAATWIPIQKAQAVVMAGDHFQLPPTIKSYEAAMNGLS 412
Query: 442 VSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV 500
+L E+ + LA+K L QYRM + I ++++ Y LI++ + H L +
Sbjct: 413 ETLFEK--VIKRQPLASKMLQLQYRMPELIMGFSNQMFYNHGLIAADNTSKHYLSE---- 466
Query: 501 KPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-AGV 559
+ P+L G L EE L S +N+ EA + + L+ G+
Sbjct: 467 ------EEPVLEFVDTAGSGFLEAVEEESL------STFNQEEANFALQCLEDLLKRTGI 514
Query: 560 SPSA-----IAVQSPYVAQVQHLRERLDD---LPEAAGV-EVATIDS---FQGREADAVI 607
+ I V +PY AQV+ L E L + P E+ TIDS FQG+E D ++
Sbjct: 515 AKMKEKGWNIGVIAPYRAQVRKLNELLFESYAFPNLRSFSELLTIDSIDGFQGQERDIIL 574
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
IS+VRSN G +GFL D RRMNV +TRA + + V+ DS+T+ + F +I
Sbjct: 575 ISLVRSNAKGEIGFLADIRRMNVGLTRAKRKLVVIGDSATLGSHPFYRSFFDYI 628
>gi|343415926|emb|CCD20512.1| hypothetical protein, conserved (fragment) [Trypanosoma vivax Y486]
Length = 794
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 140/456 (30%), Positives = 225/456 (49%), Gaps = 56/456 (12%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV-QQGERVLVTAPTNAA 291
K ++SQ+ A+ L+ +IQGPPGTGKT +II + + ++ RVLV AP+NAA
Sbjct: 344 KGLNESQQAAVKAALSNA--FTLIQGPPGTGKTSTSVQIIRQLLLRKKTRVLVCAPSNAA 401
Query: 292 VDNMVEKLSDVGLNIVRVGNPARI-SPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL 350
VD++ E + ++ +RV R + + +LG V+ + + RKK D+ +
Sbjct: 402 VDHLSESMYKNKIDFIRVQPRYREENDSGRPYTLGSRVREIMEAM--PLNRKKRDI---V 456
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT- 409
++ L+ L+ +QL ++L E VK++L+ +VV T GA +R
Sbjct: 457 KRALESGRLSEEEKQLCQKL-------EDRAVKKILAETRVVACTCIGAGSRWLRGFKAD 509
Query: 410 FDLVG------------------KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
F L+ K+ L GD QL PV+LS A + G SL ER A
Sbjct: 510 FVLIDEASQATEPETLVPLFRGEKQVALVGDHRQLGPVVLSNVAGKKGFARSLFERLAGA 569
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G T+L QYR + I ++S YGG+++ D + P + P+L
Sbjct: 570 --GSEITQLNLQYRTHPFIYRFSSMAFYGGTVLDGVPAEKR---DASGIFPWPNPEKPML 624
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPY 570
D G EE D SF NE EA + V +++ +G V P + + SPY
Sbjct: 625 FYDCS--------GVEEVGD--SGASFLNEAEARATISVVDAVLESGAVRPDEVGIISPY 674
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
AQ +++RERL A VE++T+D++QGRE + +I+S VR+N VGF+GD
Sbjct: 675 RAQCEYMRERLLQWGTAGKDIYEKVEISTVDAYQGREKEIIILSCVRNNEERTVGFIGDE 734
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
RR+NV++TRA + + + + + + ++LL ++
Sbjct: 735 RRLNVSLTRARRGLIAIGKAEALRGDKCWSKLLLYM 770
>gi|265766889|ref|ZP_06094718.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263253266|gb|EEZ24742.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 634
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 147/513 (28%), Positives = 242/513 (47%), Gaps = 85/513 (16%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDG----------IMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV + N LA+ ++ L + + +Q+ A+ L K
Sbjct: 150 TMFEALEDVIRAKGNRLAELRDILLSKQPSCWRATYPVRFPWLNSTQEAAVNKVLCAK-D 208
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 209 VAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNP 268
Query: 313 ARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA-- 360
+R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 269 SR-------------VNDKMLSFTYERRFEGHPAYTELWGIRKSIREMGNRMRKSSYSER 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------ 412
R + L + + E + +++ S A+V+ +T + ++ RR T +
Sbjct: 316 EAARSRINHLRERATELEIQINEDLFSGARVIASTLVSSNHRILTGRRFTTLFIDEAAQA 375
Query: 413 ----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R I AGD CQL P I +A + G+ +L+E+ A + ++ L
Sbjct: 376 LEAACWTAIRRADRVIFAGDHCQLPPTIKCIEAAQNGLEQTLMEKVAANKQETVSL-LKV 434
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ +I ++S+ Y G L ++ V + ++D P+ +DT
Sbjct: 435 QYRMHQSIMQFSSEWFYQGELQAAPEVTNRGILDLDL---------PMSWIDTS------ 479
Query: 523 SLGCEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI------AVQSPYVAQV 574
E H + G SF N+ EA +++ + + I + + SPY AQV
Sbjct: 480 --EMEFHEEFVGE-SFGRINKPEANLLLQELEAYIRKIGEKRVLEERIDFGLISPYKAQV 536
Query: 575 QHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
Q+LR +L P + + + T+D FQG+E D + IS+VR+N G +GFL D RRMNV
Sbjct: 537 QYLRGKLKGCLFFRPFRSQITIHTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNV 596
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIRY 663
AITRA + ++ D+ T+ + F +L+ +IR+
Sbjct: 597 AITRARMKLVILGDAVTMSKHAFYKKLIGYIRH 629
>gi|423278771|ref|ZP_17257685.1| hypothetical protein HMPREF1203_01902 [Bacteroides fragilis HMW
610]
gi|404585763|gb|EKA90367.1| hypothetical protein HMPREF1203_01902 [Bacteroides fragilis HMW
610]
Length = 656
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 140/481 (29%), Positives = 231/481 (48%), Gaps = 71/481 (14%)
Query: 220 ADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
+ W E+ + + +Q++A+ L K + I+ GPPGTGKT L E + + +
Sbjct: 201 SQWREIY--PVRFPWLNTTQEEAVNKVLRAK-DVAIVHGPPGTGKTTTLVEAVYETLHRE 257
Query: 280 ERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEF 339
+VLV A +N AVD + EKL D G+ ++R+GNP+R++ K L + + S A
Sbjct: 258 NQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNPSRVN----DKMLSFTYERRFESHPAYT 313
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVL------SSAQVVL 393
E +RK +R + + G + + L+ KE+ T E+L SSA+V+
Sbjct: 314 E--LWGIRKSIRD-MGNHLRKGGYSERESTRNRILRLKERATELEILINEDLFSSARVIA 370
Query: 394 ATNTGAADPLI--RRLDTFDL----------------VGKRCILAGDQCQLAPVILSRKA 435
+T + ++ R T + R ILAGD CQL P I +A
Sbjct: 371 STLVSSNHRILTGRHFSTLFIDEAAQALEAACWIAIRKADRVILAGDHCQLPPTIKCMEA 430
Query: 436 LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--L 493
G+ +L+E+ +++ + L QYRM+ +I + S Y G L ++ ++ L
Sbjct: 431 ARSGLDRTLMEKV-VMNKQEAVSLLKIQYRMHRSIMQFPSAWFYQGELEAAPEISHRGIL 489
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF--YNEGEAEIVVHHV 551
+DTP WI + + H + G SF N+ EA +++ +
Sbjct: 490 ELDTPI---NWIDTSEM----------------DFHEEFVGE-SFGRINKPEANLLLQEL 529
Query: 552 FSLICAGVSPSAIAVQ-------SPYVAQVQHLRERLDD----LPEAAGVEVATIDSFQG 600
+ I + + +A + SPY AQVQ+LR ++ P + V T+D FQG
Sbjct: 530 ENYI-RKIGENRVAEECIDFGLISPYKAQVQYLRNKIKGNPFFRPYRNRITVNTVDGFQG 588
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
+E D + IS+VR+N G +GFL D RRMNVAITRA + ++ D++T+ + F +L+ +
Sbjct: 589 QERDVIFISLVRANENGQIGFLNDLRRMNVAITRARMKLVILGDATTMSKHAFYRKLIEY 648
Query: 661 I 661
I
Sbjct: 649 I 649
>gi|375359786|ref|YP_005112558.1| putative DNA-binding protein [Bacteroides fragilis 638R]
gi|301164467|emb|CBW24025.1| putative DNA-binding protein [Bacteroides fragilis 638R]
Length = 634
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 244/509 (47%), Gaps = 77/509 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDG----------IMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV + N LA+ ++ L + + +Q+ A+ L K
Sbjct: 150 TMFEALEDVIRAKGNRLAELRDILLSKQPSCWRETYPVRFPWLNSTQEAAVNKVLCAK-D 208
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 209 VAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNP 268
Query: 313 ARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLAA- 361
+R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 269 SR-------------VNDKMLSFTYERRFEGHPAYTELWGIRKSIREMGNRMRKSSYSER 315
Query: 362 -GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------ 412
R + L + + E + +++ S A+V+ +T + ++ RR T +
Sbjct: 316 EAARSRINHLRERATELEIQINEDLFSGARVIASTLVSSNHRILTGRRFTTLFIDEAAQA 375
Query: 413 ----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R I AGD CQL P I +A G+ +L+E+ A + ++ L
Sbjct: 376 LEAACWIAIRKADRVIFAGDHCQLPPTIKCIEAARNGLEQTLMEKVAANKQETVSL-LKV 434
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL--PYG 520
QYRM+ +I ++S+ Y G L ++ V + ++D + +WI + + + +G
Sbjct: 435 QYRMHQSIMQFSSEWFYQGELQAAPEVTNRGILDLD-LPMSWIDTSEMEFHEEFIGESFG 493
Query: 521 SLSLGCEEHLDLAGTGSFYNE-GEAEIVVHHV-FSLICAGVSPSAIAVQSPYVAQVQHLR 578
++ E +L L ++ + GE ++ + F LI SPY AQVQ+LR
Sbjct: 494 RIN-KPEANLLLQELEAYIRKIGEKRVLEERIDFGLI------------SPYKAQVQYLR 540
Query: 579 ERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+L P + + + T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITR
Sbjct: 541 GKLKGCLFFRPFRSQITIHTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAITR 600
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRY 663
A + ++ D+ T+ + F +L+ +IR+
Sbjct: 601 ARMKLVILGDAVTMSKHAFYKKLIGYIRH 629
>gi|345513474|ref|ZP_08792995.1| hypothetical protein BSEG_03593 [Bacteroides dorei 5_1_36/D4]
gi|229437375|gb|EEO47452.1| hypothetical protein BSEG_03593 [Bacteroides dorei 5_1_36/D4]
Length = 630
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 146/497 (29%), Positives = 229/497 (46%), Gaps = 83/497 (16%)
Query: 215 EENDLADWSEVKLDGIMGKTF----------DDSQKKAIALGLNKKRPLLIIQGPPGTGK 264
++N LA+ ++ + +TF ++SQ++A+ ++ K + I+ GPPGTGK
Sbjct: 162 KDNRLAELRDIFHGTLKAQTFSFGFTRFPWLNNSQEEAVNKVMHAK-DVAIVHGPPGTGK 220
Query: 265 TGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL 324
T L E I + + +V+V A +N AVD + EKL D G+ ++R+GNP R
Sbjct: 221 TTTLVEAIYETLHRENQVMVCAQSNMAVDWISEKLVDRGVPVLRIGNPTR---------- 270
Query: 325 GEIVKSKLASFVAE--FERKKS-----DLRKDLRQCLKDDSLAA---GIRQLLKQLGKTL 374
V K+ F E FE +RK +R+ A IR + L
Sbjct: 271 ---VNDKMLFFTYERRFESHPDYPQLWSIRKAIRELYSRSRKGAERENIRLKINSLKDRA 327
Query: 375 KKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------------VGKR 416
+ E + + S A+V+ T +A+ ++ RR T + R
Sbjct: 328 TELEIRINEALFSEARVIACTLVSSANRVLTGRRFGTLFIDEAAQALEPACWIAIRKADR 387
Query: 417 CILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASK 476
+LAGD CQL P I +A GG+ +L++ ++ + L QYRMND I ++S+
Sbjct: 388 IVLAGDHCQLPPTIKCVEAARGGLDQTLMQEIVQ-NKPETVSLLKVQYRMNDEIMHFSSE 446
Query: 477 EMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
Y G L S+ V L DTP W+ + + C E
Sbjct: 447 WFYQGELKSAPEVKYRGILDYDTPI---EWV--------------NTEGMNCNEEFVGES 489
Query: 535 TGSFYNEGEAEIVV----HHVFSLICAGVSPSAIAVQ--SPYVAQVQHLRE--RLDDL-- 584
G N+ EA + + H++ + I V SPY AQVQ+LR+ + D
Sbjct: 490 FGRI-NKAEAALSISQLTHYINKIGKERFLEERIDVGLISPYKAQVQYLRQLIKRDAFFK 548
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
P + + T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITRA + ++ D
Sbjct: 549 PYRHLITINTVDGFQGQERDVILISLVRANEDGQIGFLNDLRRMNVAITRARMKLIILGD 608
Query: 645 SSTICHNTFLARLLRHI 661
+ST+ + F +L +I
Sbjct: 609 ASTLTKHPFYKKLYEYI 625
>gi|53715040|ref|YP_101032.1| helicase [Bacteroides fragilis YCH46]
gi|52217905|dbj|BAD50498.1| putative helicase [Bacteroides fragilis YCH46]
Length = 634
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 244/509 (47%), Gaps = 77/509 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDG----------IMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV + N LA+ ++ L + + +Q+ A+ L K
Sbjct: 150 TMFEALEDVIRAKGNRLAELRDILLSKQPSCWRETYPVRFPWLNSTQEAAVNKVLCAK-D 208
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 209 VAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNP 268
Query: 313 ARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLAA- 361
+R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 269 SR-------------VNDKMLSFTYERRFEGHPAYTELWGIRKSIREMGNRMRKSSYSER 315
Query: 362 -GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------ 412
R + L + + E + +++ S A+V+ +T + ++ RR T +
Sbjct: 316 EAARSRINHLRERATELEIQINEDLFSGARVIASTLVSSNHRILTGRRFTTLFIDEAAQA 375
Query: 413 ----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R I AGD CQL P I +A G+ +L+E+ A + ++ L
Sbjct: 376 LEAACWIAIRKADRVIFAGDHCQLPPTIKCIEAARNGLEQTLMEKVAANKQETVSL-LKV 434
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL--PYG 520
QYRM+ +I ++S+ Y G L ++ V + ++D + +WI + + + +G
Sbjct: 435 QYRMHQSIMQFSSEWFYQGELQAAPEVTNRGILDLD-LPMSWIDTSEMEFHEEFIGESFG 493
Query: 521 SLSLGCEEHLDLAGTGSFYNE-GEAEIVVHHV-FSLICAGVSPSAIAVQSPYVAQVQHLR 578
++ E +L L ++ + GE ++ + F LI SPY AQVQ+LR
Sbjct: 494 RIN-KPEANLLLQELEAYIRKIGEKRVLEERIDFGLI------------SPYKAQVQYLR 540
Query: 579 ERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+L P + + + T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITR
Sbjct: 541 GKLKGCSFFRPFRSQITIHTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAITR 600
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRY 663
A + ++ D+ T+ + F +L+ +IR+
Sbjct: 601 ARMKLVILGDAVTMSKHAFYKKLIGYIRH 629
>gi|395333828|gb|EJF66205.1| ATP dependent helicase [Dichomitus squalens LYAD-421 SS1]
Length = 1060
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 139/465 (29%), Positives = 215/465 (46%), Gaps = 80/465 (17%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + +VLV AP+N AVD
Sbjct: 428 LNHSQMYAVKSVLQK--PLSLIQGPPGTGKTVTSASIVYHLAKMNPGQVLVCAPSNVAVD 485
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R E + S + SF+ L Q
Sbjct: 486 QLTEKIHATGLKVVRLSAKSR-----------EALDSSV-SFLT------------LHQQ 521
Query: 354 LKDDSLAAGIRQLLK------QLGKTLKKKEKETV----KEVLSSAQVVLATNTGAADPL 403
+ +++ +++L++ +L ++K K + KE+L +A V+ T GA DP
Sbjct: 522 VANNTTHVELQKLIQLKNEQGELSSNDERKYKALIRQCEKEILGAADVICCTCVGAGDPR 581
Query: 404 IRRLD-------------------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
+ +L L K+ +L GD QL PVI+++KA G+ SL
Sbjct: 582 LSKLKFRTVLIDEATQAAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAARAGLTQSL 641
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
ER L G +L QYRM+ ++ + S Y G+L + T L + F P
Sbjct: 642 FERLVVL--GNRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWP-- 697
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
+ P+ +LG EE ++ +G+ + A V V +GV PS I
Sbjct: 698 VPDTPMFFYQ--------NLGQEE---ISSSGTSFLNRRASNVEKIVTKFFKSGVVPSQI 746
Query: 565 AVQSPYVAQVQHLRERLD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
V +PY Q ++ + DL + +EVA++D+FQGRE D +I+S VRSN
Sbjct: 747 GVITPYEGQRSYIVNYMQFNGSLKKDLYKE--IEVASVDAFQGREKDYIILSCVRSNEHQ 804
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+GFL D RR+NVA+TRA V ++ + + + LL H +
Sbjct: 805 GIGFLNDPRRLNVALTRAKYGVVILGNPKVLSKHPLWHYLLTHYK 849
>gi|383116067|ref|ZP_09936820.1| hypothetical protein BSHG_3112 [Bacteroides sp. 3_2_5]
gi|251945242|gb|EES85680.1| hypothetical protein BSHG_3112 [Bacteroides sp. 3_2_5]
Length = 634
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 244/509 (47%), Gaps = 77/509 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDG----------IMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV + N LA+ ++ L + + +Q+ A+ L K
Sbjct: 150 TMFEALEDVIRAKGNRLAELRDILLSKQPSCWRATYPVRFPWLNSTQEAAVNKVLCAK-D 208
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 209 VAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNP 268
Query: 313 ARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLAA- 361
+R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 269 SR-------------VNDKMLSFTYERRFEGHPAYTELWGIRKSIREMGNRMRKSSYSER 315
Query: 362 -GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------ 412
R + L + + E + +++ S A+V+ +T + ++ RR T +
Sbjct: 316 EAARSRINHLRERATELEIQINEDLFSGARVIASTLVSSNHRILTGRRFTTLFIDEAAQA 375
Query: 413 ----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R I AGD CQL P I +A G+ +L+E+ A + ++ L
Sbjct: 376 LEAACWIAIRKADRVIFAGDHCQLPPTIKCIEAARNGLEQTLMEKVAANKQETVSL-LKV 434
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL--PYG 520
QYRM+ +I ++S+ Y G L ++ V + ++D + +WI + + + +G
Sbjct: 435 QYRMHQSIMQFSSEWFYQGELQAAPEVTNRGILDLD-LPMSWIDTSEMEFHEEFIGESFG 493
Query: 521 SLSLGCEEHLDLAGTGSFYNE-GEAEIVVHHV-FSLICAGVSPSAIAVQSPYVAQVQHLR 578
++ E +L L ++ + GE ++ + F LI SPY AQVQ+LR
Sbjct: 494 RIN-KPEANLLLQELEAYIRKIGEKRVLEERIDFGLI------------SPYKAQVQYLR 540
Query: 579 ERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
+L P + + + T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITR
Sbjct: 541 GKLKGCSFFRPFRSQITIHTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAITR 600
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIRY 663
A + ++ D+ T+ + F +L+ +IR+
Sbjct: 601 ARMKLVILGDAVTMSKHAFYKKLIGYIRH 629
>gi|336410631|ref|ZP_08591107.1| hypothetical protein HMPREF1018_03124 [Bacteroides sp. 2_1_56FAA]
gi|335944206|gb|EGN06030.1| hypothetical protein HMPREF1018_03124 [Bacteroides sp. 2_1_56FAA]
Length = 634
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 147/513 (28%), Positives = 241/513 (46%), Gaps = 85/513 (16%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDG----------IMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV + N LA+ ++ L + + +Q+ A+ L K
Sbjct: 150 TMFEALEDVIRTKGNRLAELRDILLSKQPSRWRETYPVRFPWLNSTQEAAVNKVLCAK-D 208
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 209 VAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNP 268
Query: 313 ARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA-- 360
+R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 269 SR-------------VNDKMLSFTYERRFEGHPAYTELWGIRKSIREMGNRMRKSSYSER 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------ 412
R + L + + E + +++ S A+V+ +T + ++ RR T +
Sbjct: 316 EAARSRINHLRERATELEIQINEDLFSGARVIASTLVSSNHRILTGRRFTTLFIDEAAQA 375
Query: 413 ----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R I AGD CQL P I +A G+ +L+E+ A + ++ L
Sbjct: 376 LEAACWIAIRKADRVIFAGDHCQLPPTIKCIEAARNGLEQTLMEKVAANKQETVSL-LKV 434
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ +I ++S+ Y G L ++ V + ++D P+ +DT
Sbjct: 435 QYRMHQSIMQFSSEWFYQGELQAAPEVTNRGILDLDL---------PMSWIDTS------ 479
Query: 523 SLGCEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAIAVQ------SPYVAQV 574
E H + G SF N+ EA +++ + + I + + SPY AQV
Sbjct: 480 --EMEFHEEFVGE-SFGRINKPEANLLLQELEAYIRKIGEKRVLEERIDFGLISPYKAQV 536
Query: 575 QHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
Q+LR +L P + + + T+D FQG+E D + IS+VR+N G +GFL D RRMNV
Sbjct: 537 QYLRGKLKGCLFFRPFRSQITIHTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNV 596
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIRY 663
AITRA + ++ D+ T+ + F +L+ +IR+
Sbjct: 597 AITRARMKLVILGDAVTMSKHAFYKKLIGYIRH 629
>gi|340369264|ref|XP_003383168.1| PREDICTED: regulator of nonsense transcripts 1-like [Amphimedon
queenslandica]
Length = 1081
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 141/452 (31%), Positives = 215/452 (47%), Gaps = 73/452 (16%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++PL +IQGPPGTGKT I+ + G +VLV AP+N AVD + EK+ GL +VR
Sbjct: 465 QKPLGLIQGPPGTGKTVTSATIVYHLSKMGMGQVLVCAPSNIAVDQLTEKIHKTGLKVVR 524
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLK 368
+ +R E + S + SF+A L + Q KD Q LK
Sbjct: 525 LCAKSR-----------EAIDSPV-SFLA--------LHNQVIQLAKDSYPELKKLQQLK 564
Query: 369 ----QLGKTLKKK----EKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------- 413
+L T +K+ +++ KE+L A V+ T A DP + + +F +V
Sbjct: 565 DDQGELSSTDEKRYTSLKRQLEKELLLGADVICCTCVSAGDPRLAKF-SFKMVLIDESTQ 623
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
K+ +L GD CQL PVI+ +KA + SL ER L+ + +L
Sbjct: 624 ATEPECMVPIVMGSKQVVLVGDHCQLGPVIMCKKAANARLSQSLFERLVLLN--IKPIRL 681
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ A+ + S Y G+L ++ + + + F P P+
Sbjct: 682 EVQYRMHPALTEFPSSVFYDGTLQNAVSPEERRMDEVNFPWPN--VDKPMFFW------- 732
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
S G EE + +GT S+ N EA V V L+ GV P I V +PY Q ++ ++
Sbjct: 733 -CSFGQEE-ISSSGT-SYLNRTEAVNVEKVVTKLMKNGVKPVQIGVITPYEGQRAYVVQQ 789
Query: 581 LD-------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAIT 633
+ L E +EVA++D+FQGRE D +I+S VRSN +GFL D+RR+NVA+T
Sbjct: 790 MQFNGGMSSKLYEQ--LEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDARRLNVALT 847
Query: 634 RACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RA V ++ ++ + N L++ + G
Sbjct: 848 RAKYGVIIIGNAKVLSRNELWHHLIKEYQEQG 879
>gi|71003407|ref|XP_756384.1| hypothetical protein UM00237.1 [Ustilago maydis 521]
gi|46095821|gb|EAK81054.1| hypothetical protein UM00237.1 [Ustilago maydis 521]
Length = 1088
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 140/450 (31%), Positives = 207/450 (46%), Gaps = 49/450 (10%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT I+ + + VLV AP+N AVD
Sbjct: 480 LNHSQVNAVKSVLQK--PLSLIQGPPGTGKTVTSATIVYQLSKMNPGPVLVCAPSNVAVD 537
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R E + ++ + +D +L++
Sbjct: 538 QLTEKIHLTGLKVVRLTAKSR-----------EALDGPISFLTLHEQVANNDTNIELQKL 586
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL------ 407
++ L +L + K + KE+LS+A V+ T G DP + ++
Sbjct: 587 IQ---LKNEQGELSSSDERKYKALTRACEKEILSTADVICCTCVGCGDPRLSKIKFRTVL 643
Query: 408 --DTFDLVGKRC-----ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
+ C + GD QL PVI+++K G SL ER L G +L
Sbjct: 644 VDEATQAAEPECMIPLVVFVGDHLQLGPVIMNKKVARAGASQSLFERLIML--GNRPIRL 701
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ ++ + S Y G+L + T L D F P + P+L
Sbjct: 702 QVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKDVDFPWP--VPSLPMLFFQ------ 753
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQH 576
+LG EE + +GT SF N EA V V AGV PS I + +PY Q V H
Sbjct: 754 --NLGQEE-ISSSGT-SFLNRTEAANVEKIVTRFFKAGVKPSQIGIVTPYEGQRSYIVNH 809
Query: 577 LRERLDDLPE-AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
++ E VEVA++D+FQGRE D +I+S VRSN +GFL D RR+NVA+TRA
Sbjct: 810 MQLHGSLKKELYKDVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLSDPRRLNVALTRA 869
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+ ++ + + + LL H + G
Sbjct: 870 RFGLVILGNPKVLNKHPLWHYLLVHYKEKG 899
>gi|423270406|ref|ZP_17249377.1| hypothetical protein HMPREF1079_02459 [Bacteroides fragilis
CL05T00C42]
gi|423275362|ref|ZP_17254307.1| hypothetical protein HMPREF1080_02960 [Bacteroides fragilis
CL05T12C13]
gi|392698330|gb|EIY91512.1| hypothetical protein HMPREF1079_02459 [Bacteroides fragilis
CL05T00C42]
gi|392702843|gb|EIY95988.1| hypothetical protein HMPREF1080_02960 [Bacteroides fragilis
CL05T12C13]
Length = 634
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 147/513 (28%), Positives = 241/513 (46%), Gaps = 85/513 (16%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDG----------IMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV + N LA+ ++ L + + +Q+ A+ L K
Sbjct: 150 TMFEALEDVIRAKGNRLAELRDILLSKQPSRWRETYPVRFPWLNSTQEAAVNKVLCAK-D 208
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 209 VAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNP 268
Query: 313 ARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA-- 360
+R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 269 SR-------------VNDKMLSFTYERRFEGHPAYTELWGIRKSIREMGNRMRKSSYSER 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------ 412
R + L + + E + +++ S A+V+ +T + ++ RR T +
Sbjct: 316 EAARSRINHLRERATELEIQINEDLFSGARVIASTLVSSNHRILTGRRFTTLFIDEAAQA 375
Query: 413 ----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R I AGD CQL P I +A G+ +L+E+ A + ++ L
Sbjct: 376 LEAACWIAIRKADRVIFAGDHCQLPPTIKCIEAARNGLEQTLMEKVAANKQETVSL-LKV 434
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ +I ++S+ Y G L ++ V + ++D P+ +DT
Sbjct: 435 QYRMHQSIMQFSSEWFYQGELQAAPEVTNRGILDLDL---------PMSWIDTS------ 479
Query: 523 SLGCEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAIAVQ------SPYVAQV 574
E H + G SF N+ EA +++ + + I + + SPY AQV
Sbjct: 480 --EMEFHEEFVGE-SFGRINKPEANLLLQELEAYIRKIGEKRVLEERIDFGLISPYKAQV 536
Query: 575 QHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
Q+LR +L P + + + T+D FQG+E D + IS+VR+N G +GFL D RRMNV
Sbjct: 537 QYLRGKLKGCLFFRPFRSQITIHTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNV 596
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIRY 663
AITRA + ++ D+ T+ + F +L+ +IR+
Sbjct: 597 AITRARMKLVILGDAVTMSKHAFYKKLIGYIRH 629
>gi|149061857|gb|EDM12280.1| immunoglobulin mu binding protein 2, isoform CRA_b [Rattus
norvegicus]
Length = 567
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 134/228 (58%), Gaps = 13/228 (5%)
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
+ER A H + L QYRM+ AI WAS+ MY G L + +VA HLL D P V T
Sbjct: 1 MERLAEKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTE 60
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEE-HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA 563
T PLLL+DT GC L+ + S N GE +V H+ +L+ AGV
Sbjct: 61 ETSVPLLLIDT--------AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGD 112
Query: 564 IAVQSPYVAQVQHLRERLDD-LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
IAV +PY QV LR+ L + PE +E+ ++D FQGRE +AVI++ VRSN G VGFL
Sbjct: 113 IAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFL 169
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+ RR+NVA+TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 170 AEDRRINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 217
>gi|60683002|ref|YP_213146.1| DNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|60494436|emb|CAH09232.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343]
Length = 634
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 147/513 (28%), Positives = 241/513 (46%), Gaps = 85/513 (16%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDG----------IMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV + N LA+ ++ L + + +Q+ A+ L K
Sbjct: 150 TMFEALEDVIRAKGNRLAELRDILLSKQPSCWRATYPVRFPWLNSTQEAAVNKVLCAK-D 208
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 209 VAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNP 268
Query: 313 ARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA-- 360
+R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 269 SR-------------VNDKMLSFTYERRFEGHPAYTELWGIRKSIREMGNRMRKSSYSER 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------ 412
R + L + + E + +++ S A+V+ +T + ++ RR T +
Sbjct: 316 EAARSRINHLRERATELEIQINEDLFSGARVIASTLVSSNHRILTGRRFTTLFIDEAAQA 375
Query: 413 ----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R I AGD CQL P I +A G+ +L+E+ A + ++ L
Sbjct: 376 LEAACWIAIRKADRVIFAGDHCQLPPTIKCIEAARNGLEQTLMEKVAANKQETVSL-LKV 434
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ +I ++S+ Y G L ++ V + ++D P+ +DT
Sbjct: 435 QYRMHQSIMQFSSEWFYQGELQAAPEVTNRGILDLDL---------PMSWIDTS------ 479
Query: 523 SLGCEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI------AVQSPYVAQV 574
E H + G SF N+ EA +++ + + I + + SPY AQV
Sbjct: 480 --EMEFHEEFVGE-SFGRINKPEANLLLQELEAYIRKIGEKRVLEERIDFGLISPYKAQV 536
Query: 575 QHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
Q+LR +L P + + + T+D FQG+E D + IS+VR+N G +GFL D RRMNV
Sbjct: 537 QYLRGKLKGCLFFRPFRSQITIHTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNV 596
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIRY 663
AITRA + ++ D+ T+ + F +L+ +IR+
Sbjct: 597 AITRARMKLVILGDAVTMSKHAFYKKLIGYIRH 629
>gi|328866870|gb|EGG15253.1| hypothetical protein DFA_10087 [Dictyostelium fasciculatum]
Length = 854
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 223/446 (50%), Gaps = 71/446 (15%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTG----LLKEIIARAVQQGE---RVLVTAPTNA 290
SQK AI + ++ L IQGPPGTGK+ LL+ ++ R Q G+ ++L T+ TN
Sbjct: 298 SQKDAIEKSICRRASL--IQGPPGTGKSTTAIYLLRLLVHRK-QSGKSNVKILATSFTNT 354
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL 350
VDN++E L G+N++R+G+ ++ + +L ++ +L + + +R
Sbjct: 355 GVDNLLEGLLKAGVNVLRLGDANKVREELRCATLEYRMEEELNRWDSSAKRS-------- 406
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
Q K S + ++ E+E ++S A V+ +T G+ ++ + F
Sbjct: 407 NQGSKPGSSSYYMQS------------EREIKSRLISEADVICSTCIGSGHEMLMD-EKF 453
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
++ ++ L GDQ QLAP+ILS KA+EGG+ +S+ +R
Sbjct: 454 QIIVVDEATQATEPAILIPLLKSSEQMYLFGDQNQLAPIILSHKAIEGGLNISMFDRL-- 511
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
G+ L TQYRM+ +I+ + Y G L+++ T S+L + P P+
Sbjct: 512 FKSGLTPFLLNTQYRMHSSISDFPRHHFYNG-LLNNGTNDSNLKIPIGIKWPQ--IDFPV 568
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS--PSAIAVQS 568
+ +D +S G EE S YN EA VV SL+ S + I + +
Sbjct: 569 VFID-------ISNGREE----IKHHSLYNNEEAVAVVQVAESLLENDESLFRNNIGIIT 617
Query: 569 PYVAQVQHLRERLDDLPEAAGVE--VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
PY AQV+H+ + + G + VAT+DS+QGRE D +I S VRSNT G +GFL D R
Sbjct: 618 PYHAQVKHINQVFSNDKSWRGAQPSVATVDSYQGREMDVIIFSTVRSNTKGNIGFLKDWR 677
Query: 627 RMNVAITRACKHVAVVCDSSTICHNT 652
R+NV+ITRA + + V+ + TI +++
Sbjct: 678 RLNVSITRAKRGLVVIGNFGTINNSS 703
>gi|302829959|ref|XP_002946546.1| hypothetical protein VOLCADRAFT_79084 [Volvox carteri f.
nagariensis]
gi|300268292|gb|EFJ52473.1| hypothetical protein VOLCADRAFT_79084 [Volvox carteri f.
nagariensis]
Length = 832
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 138/438 (31%), Positives = 222/438 (50%), Gaps = 59/438 (13%)
Query: 96 GNHRLPPTTLSPGDMVCVRVCDSRGAC-ATSCIQGFVHNLGEDGCTISVALESRHGDPTF 154
G LPP P D+V +R SRG A + G ++ + E ++V D
Sbjct: 198 GTAELPPHKFGPHDVVALR--PSRGPSDAPPLVSGVIYRVRETAIIVAV-------DEAP 248
Query: 155 SKLFGKSVRIDRIQGLADTLTYER---NCEALMLLQKNGLHKRN----PSIAAVVTLFGD 207
+ + +R+D+ LA+ +TY+R +AL+ +++ + P A V +FG
Sbjct: 249 EEGLDQQLRLDK---LANEVTYQRMRGTLDALLRVRRGTAATPDGRFLPGGAVVDVVFGR 305
Query: 208 KEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGL 267
+E E+ A W+ + + D+SQ+ A++L L+ + + ++ PPGTGKT
Sbjct: 306 RE--PRFTESAPA-WTAIN------RGLDESQRAAVSLALSSQ-DVALVHEPPGTGKTTA 355
Query: 268 LKEIIARAVQQGERVLVTAPTNAAVDNMVEKL--SDVGLNIVRVGNPARISPAVASKSL- 324
+ EII + V +G RVL A +N AVDN+VE+L ++ L +VR+G+PAR+ P V SL
Sbjct: 356 VVEIILQEVARGSRVLAAAASNIAVDNLVERLVRAEPKLKLVRLGHPARLLPQVLDSSLE 415
Query: 325 GEIVKSKLASFVAEFERKKSDLRKDLRQC-LKDDSLAAGIRQLLKQLGKTLKKKEKETVK 383
+++S +S + + D+ + L + +D + +R L++L K + +++ V
Sbjct: 416 AHVLRSDNSSLARDCRAEMKDINQRLLKLGPRDRAERRALRSDLRRLAKEERLRQEAAVV 475
Query: 384 EVLSSAQVVLATNTGAADPLIRRLDT--FD-------------------LVGKRCILAGD 422
EV+ A+VV T TG + R+L++ FD L +R +LAGD
Sbjct: 476 EVIKGARVVCCTLTGVSH---RQLESELFDVAVVDEAAQALEAATWSALLRARRAVLAGD 532
Query: 423 QCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
QL P ++S +A + G+ +L ER L A LT QYRMN AI W+S E+Y G
Sbjct: 533 HLQLPPTVVSEEAAKMGLARTLFERLQRLLPAASAM-LTVQYRMNKAIMQWSSDELYEGR 591
Query: 483 LISSSTVASHLLVDTPFV 500
L + STVA H LVD V
Sbjct: 592 LTAHSTVADHTLVDVAGV 609
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 100/161 (62%), Gaps = 8/161 (4%)
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSP 569
LLL+DT G EE + G+ S+ N GEA+ V+ HV L+ +SP I + +P
Sbjct: 673 LLLIDT------AGCGYEEQQEAEGS-SYANPGEAKAVMAHVRRLVQRRISPHNIGIITP 725
Query: 570 YVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
Y AQV L+E L A +E++++D FQGRE +A+IISMVRSN G VGFL D RRMN
Sbjct: 726 YNAQVALLKE-LRQEQAATALEISSVDGFQGREKEAIIISMVRSNDSGEVGFLSDRRRMN 784
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
VA+TRA +H A+VCD+ T+ H+ FL RL+ + G A
Sbjct: 785 VAVTRARRHCAIVCDTETVSHDEFLKRLVDYFSANGEYSSA 825
>gi|255691334|ref|ZP_05415009.1| DNA helicase [Bacteroides finegoldii DSM 17565]
gi|260622976|gb|EEX45847.1| putative DNA helicase [Bacteroides finegoldii DSM 17565]
Length = 628
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 137/450 (30%), Positives = 213/450 (47%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +V+V A +N AVD + EKL D G+ ++R+G
Sbjct: 204 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVMVCAQSNTAVDWICEKLVDRGVPVLRIG 263
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA 360
NP R V K+ SF E FE + +RK +R+ ++ S
Sbjct: 264 NPTR-------------VNDKMLSFTYERRFESHPAYPELWGIRKSIREMGGRMRRGSYE 310
Query: 361 A--GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL---- 412
G+R + +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 311 EREGMRSRMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAA 370
Query: 413 ------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
R +LAGD CQL P I +A GG+ +L+E+ ++ L
Sbjct: 371 QALEAACWIAIRKADRVVLAGDHCQLPPTIKCIEAARGGLEYTLMEKVVRQKPSSVSL-L 429
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP-TWITQCPLLLLDTRL-- 517
QYRMN+AI + S Y G L ++ V ++D F P +WI + + +
Sbjct: 430 KVQYRMNEAIMQFPSDWFYQGELEAAPEVRYRGILD--FDSPMSWIDTSEMEFHEEFVGE 487
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV-FSLICAGVSPSAIAVQSPYVAQVQH 576
+G ++ L G+ I+ + F LI SPY AQVQ+
Sbjct: 488 SFGRINKQEANLLLEELEAYINRIGKERILEERIDFGLI------------SPYKAQVQY 535
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D V IS+VR+N G +GFL D RRMNVAI
Sbjct: 536 LRSKIKGSSFLRPLRSLITVNTVDGFQGQERDVVFISLVRANEEGQIGFLNDLRRMNVAI 595
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ +++T+ + F RL+ I+
Sbjct: 596 TRARMKLVILGEAATLTKHPFYKRLMAFIK 625
>gi|401881567|gb|EJT45865.1| hypothetical protein A1Q1_05671 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1018
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 153/456 (33%), Positives = 221/456 (48%), Gaps = 56/456 (12%)
Query: 225 VKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE---R 281
+ ++G + SQ +AIA+ L+++ L ++QGPPGTGKT ++ E I Q +
Sbjct: 524 IAIEGDPRVPLNPSQTRAIAMMLSER--LSLVQGPPGTGKTRVIVETIKLLKQHWQIPHP 581
Query: 282 VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER 341
VLV A TN AVDN+VE L G+N VR G+P R+SP V + +L ++ A V R
Sbjct: 582 VLVCAHTNVAVDNLVEGLKTQGVNAVRFGSPDRVSPRVEAHTLEARIEQHPAYPVLNRAR 641
Query: 342 K-KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA 400
K L+ +L + L A +++ K G+ K + EVL A VV T A
Sbjct: 642 NSKESLQAELSENLAGPQREAKQKEIGKLNGRIYLLK-RLLQAEVLHEADVVCTTCLSAT 700
Query: 401 DPLIRRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGI 440
++ +D F V + + GD QL PVI+S A +GG+
Sbjct: 701 SRVLEVID-FPFVFLDEASMATEPLSIVPLTKGSAQVAIIGDHKQLPPVIVSEAAQQGGL 759
Query: 441 GVSLLERAATLHE-GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF 499
G SL ER +HE V + L TQYRM+ +IA+++S+ Y G L + V VD
Sbjct: 760 GTSLFER--LIHEQAVPSIMLDTQYRMHPSIAAFSSEAFYNGQLRDGTVVDGQ--VDPVL 815
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG- 558
PT LL D SL+ + + S N EA V V L+ +
Sbjct: 816 HPPT----TAFLLPDGDS-SKSLTFLNHDFPESPQNRSIANHHEAGRVCDIVADLLASNP 870
Query: 559 -VSPSAIAVQSPYVAQVQHLRERL--DDL----------PEAA----GVEVATIDSFQGR 601
+ + I V +PY AQ++ + E L D+ PE A +E+ T+D F+GR
Sbjct: 871 DLKGADIGVIAPYSAQIRLITEFLTIDERRQRAFRQWLGPERAREIEDIEIRTVDGFEGR 930
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACK 637
E +I S VRSNT G +GFLGD RR+NV +TRA +
Sbjct: 931 EKSVIIFSTVRSNTGGFLGFLGDWRRLNVGLTRAKR 966
>gi|307102593|gb|EFN50864.1| hypothetical protein CHLNCDRAFT_59413 [Chlorella variabilis]
Length = 762
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 181/589 (30%), Positives = 276/589 (46%), Gaps = 92/589 (15%)
Query: 125 SCIQGFVHNLGEDGCTISVA---LESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCE 181
+ ++G V +G+D ++VA E+ P G R+D QG++ T T +R
Sbjct: 207 ATLEGTVQAVGQDEVRVAVAKPVAETMGAAPA-----GTRWRLD--QGVSAT-TAQRQLA 258
Query: 182 ALMLLQKNGLH-KRNPSIAAV-VTLFGDKE-------DVTWLEENDLADWSEVKLDGIMG 232
AL L LH R AAV L G + TW E ++ + +L
Sbjct: 259 ALSRL--GMLHDSRCRGEAAVRAILLGSPQAERLAARPTTWAESSEWRSAAAEQLRRQQQ 316
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLL---KEIIARAVQ--------QGER 281
+ ++SQ +A+A L R + QGPPGTGKT L E++ RAV+ QG
Sbjct: 317 QQLNESQVRAVAASLT--RTFTLWQGPPGTGKTRTLLAFVEVMVRAVEGSVVRRHAQGA- 373
Query: 282 VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER 341
+L A TNAA DN+++ L G+ VRVG PA++ P + L +V+S + A R
Sbjct: 374 ILAVADTNAAADNLLDGLLARGIRAVRVGQPAKVRPELRHACLEALVQSTPSGQRAARLR 433
Query: 342 KKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
+D+ L+Q + AG +L Q + + E AT +
Sbjct: 434 AGADV--FLQQVVVATCNGAGDARLEAQCFRIVVLDE------------CAQATEPSSLV 479
Query: 402 PLIRRLDTFDLVGKRCI-LAGDQCQLAPVILSRKALE-GGIGVSLLERAATLHEGVLATK 459
PL++ G +C+ +AGDQ QL P ++S +A E + V L R L GV +
Sbjct: 480 PLVK--------GAQCVVMAGDQRQLPPTVVSERAKEMYHLDVPLFTR--LLEGGVSSRL 529
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV-DTPFVKPTWITQCPLLLLDTRLP 518
L QYRM+ AI+ + S+ Y G + S T V P+ P CP+L ++
Sbjct: 530 LEVQYRMHPAISEFPSRHFYSGRVQSGVTQQDRPPVRGVPWTNPA----CPVLFIN---- 581
Query: 519 YGSLSLGCEEHLDLAGTG-----------SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
++ G E+ LAG S+ N EAE+ + + ++ S +I +
Sbjct: 582 ---IAEGSEQQA-LAGNNRRGGSGDSSGASYSNSEEAEVAMKALQRVLQEDDSVQSIVLL 637
Query: 568 SPYVAQVQHLRERLD--DLPEAAG----VEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
SPY QV+ L L +LPE A + V+T+D +QGRE+D VI S VRSN G VGF
Sbjct: 638 SPYNGQVRLLTSLLSRAELPEGAADRCQITVSTVDGYQGRESDVVIFSTVRSNPAGRVGF 697
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
L D RR+NVAITRA + + V+ + +T+ H+ ++ + R++ A
Sbjct: 698 LSDERRLNVAITRARRGLIVLGNQATLQHDPNWGAWMQWVAEQRRLRPA 746
>gi|123508693|ref|XP_001329696.1| regulator of nonsense transcripts 1 [Trichomonas vaginalis G3]
gi|121912743|gb|EAY17561.1| regulator of nonsense transcripts 1, putative [Trichomonas
vaginalis G3]
Length = 882
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 142/459 (30%), Positives = 218/459 (47%), Gaps = 67/459 (14%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAV 292
T + SQ A++ L K P +IQGPPGTGKT + ++ R +Q + VLV AP+NAAV
Sbjct: 390 TLNLSQVNAVSYAL--KSPFCMIQGPPGTGKTTTIAALVTRFLQAKAGPVLVCAPSNAAV 447
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
+ + E ++ ++ RV IS S++ E + K A + ++ R+
Sbjct: 448 ERVTEAIASTHASVCRV-----IS---TSRTDIEAIDDKYALHNMVYSLDCAESRR---- 495
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT--F 410
L D + R + K K K V+ +A V+ T +ADP RL T F
Sbjct: 496 -LNDMLIERSNRDFSEDEEKKFKDLRKSLENRVIDAADVITCTCITSADP---RLATKVF 551
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ L GD QL PV+ + K +E G+G S+++R
Sbjct: 552 PTVIIDEATQAVEPEILIPIMHGSKQVCLVGDHMQLGPVVTNPKCVEAGLGNSIVQRLVQ 611
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI----SSSTVASHLLVDTPFVKPTWIT 506
L G+ +L TQYRM+ ++ + S Y G L+ + + + P KP++
Sbjct: 612 L--GLRPQRLLTQYRMHPVLSEFPSNTFYDGELMNGIPAEKRTPQQPVFNWP--KPSF-- 665
Query: 507 QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAV 566
PL+ + ++ EE + +GT S+ N EA IV V L AGV P I +
Sbjct: 666 --PLMFYN--------NVNNEEEISNSGT-SYINAFEATIVSQIVTQLCKAGVDPQQIGI 714
Query: 567 QSPYVAQ---VQHLRERLDDLPEA--AGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
SPY Q +Q+ + LP + + +A++DSFQG E D +I+S VR N G++GF
Sbjct: 715 ISPYSGQKFYLQNFLASMATLPSSFYQRLAIASVDSFQGGEKDYIIMSCVRCNPHGSIGF 774
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
L D RR+NVA+TRA + +V + + + LLRH
Sbjct: 775 LKDYRRLNVALTRAKYGLIIVGCARVLSKSILWYNLLRH 813
>gi|237708745|ref|ZP_04539226.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|423228836|ref|ZP_17215242.1| hypothetical protein HMPREF1063_01062 [Bacteroides dorei
CL02T00C15]
gi|423247648|ref|ZP_17228696.1| hypothetical protein HMPREF1064_04902 [Bacteroides dorei
CL02T12C06]
gi|229457171|gb|EEO62892.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|392631541|gb|EIY25512.1| hypothetical protein HMPREF1064_04902 [Bacteroides dorei
CL02T12C06]
gi|392635575|gb|EIY29474.1| hypothetical protein HMPREF1063_01062 [Bacteroides dorei
CL02T00C15]
Length = 630
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 148/499 (29%), Positives = 232/499 (46%), Gaps = 87/499 (17%)
Query: 215 EENDLADWSEVKLDGIMGKTF----------DDSQKKAIALGLNKKRPLLIIQGPPGTGK 264
++N LA+ ++ + +TF ++SQ++A+ ++ K + I+ GPPGTGK
Sbjct: 162 KDNRLAELRDIFHGTLKAQTFSFGFTRFPWLNNSQEEAVNKVMHAK-DVAIVHGPPGTGK 220
Query: 265 TGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL 324
T L E I + + +V+V A +N AVD + EKL D G+ ++R+GNP R
Sbjct: 221 TTTLVEAIYETLHRENQVMVCAQSNMAVDWISEKLVDRGVPVLRIGNPTR---------- 270
Query: 325 GEIVKSKLASFVAE--FERKKS-----DLRKDLRQCLKDDSLAA---GIRQLLKQLGKTL 374
V K+ SF E FE +RK +R+ A IR + L
Sbjct: 271 ---VNDKMLSFTYERRFESHPDYPQLWSIRKAIRELYSRSRKGAERENIRLKINSLKDRA 327
Query: 375 KKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL----------------VGKR 416
+ E + + S A+V+ T +A+ ++ RR T + R
Sbjct: 328 TELEIRINEALFSEARVIACTLVSSANRVLTGRRFGTLFIDEAAQALEPACWIAIRKADR 387
Query: 417 CILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASK 476
+LAGD CQL P I +A GG+ +L++ ++ + L QYRMND I ++S+
Sbjct: 388 IVLAGDHCQLPPTIKCVEAARGGLDQTLMQEIVQ-NKPETVSLLKVQYRMNDEIMHFSSE 446
Query: 477 EMYGGSLISSSTVASH--LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
Y G L S+ V L DTP W+ + G + + G
Sbjct: 447 WFYQGELKSAPEVKYRGILDYDTPI---EWVN----------------TEGMNYNEEFVG 487
Query: 535 TGSF--YNEGEAEIVV----HHVFSLICAGVSPSAIAVQ--SPYVAQVQHLRE--RLDDL 584
SF N+ EA + + H++ + I V SPY AQVQ+LR+ + D
Sbjct: 488 E-SFGRINKAEAALSISQLTHYINKIGKERFLEERIDVGLISPYKAQVQYLRQLIKRDAF 546
Query: 585 --PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
P + + T+D FQG+E D ++IS+VR+N G +GFL D RRMNVAITRA + ++
Sbjct: 547 FKPYRHLITINTVDGFQGQERDVILISLVRANEDGQIGFLNDLRRMNVAITRARMKLIIL 606
Query: 643 CDSSTICHNTFLARLLRHI 661
D+ST+ + F +L +I
Sbjct: 607 GDASTLTKHPFYKKLYEYI 625
>gi|313148991|ref|ZP_07811184.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|424664802|ref|ZP_18101838.1| hypothetical protein HMPREF1205_00677 [Bacteroides fragilis HMW
616]
gi|313137758|gb|EFR55118.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|404575335|gb|EKA80078.1| hypothetical protein HMPREF1205_00677 [Bacteroides fragilis HMW
616]
Length = 656
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 139/481 (28%), Positives = 231/481 (48%), Gaps = 71/481 (14%)
Query: 220 ADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
+ W E+ + + +Q++A+ L K + I+ GPPGTGKT L E + + +
Sbjct: 201 SQWREIY--PVRFPWLNTTQEEAVNKVLRAK-DVAIVHGPPGTGKTTTLVEAVYETLHRE 257
Query: 280 ERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEF 339
+VLV A +N AVD + EKL D G+ ++R+GNP+R++ K L + + S A
Sbjct: 258 NQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNPSRVN----DKMLSFTYERRFESHPAYT 313
Query: 340 ERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVL------SSAQVVL 393
E +RK +R + G + + L+ KE+ T E+L SSA+V+
Sbjct: 314 E--LWGIRKSIRD-MGHHMRKGGYSERESTRNRILRLKERATELEILINEDLFSSARVIA 370
Query: 394 ATNTGAADPLI--RRLDTFDL----------------VGKRCILAGDQCQLAPVILSRKA 435
+T + ++ R + + R ILAGD CQL P I +A
Sbjct: 371 STLVSSNHRILTGRHFSSLFIDEAAQALEAACWIAIRKADRVILAGDHCQLPPTIKCMEA 430
Query: 436 LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--L 493
G+ +L+E+ +++ + L QYRM+ +I + S Y G L ++ ++ L
Sbjct: 431 ARSGLDRTLMEKV-VMNKQEAVSLLKIQYRMHRSIMQFPSAWFYQGELEAAPEISHRGIL 489
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF--YNEGEAEIVVHHV 551
+DTP WI + + H + G SF N+ EA +++ +
Sbjct: 490 ELDTPI---NWIDTSEM----------------DFHEEFVGE-SFGRINKPEANLLLQEL 529
Query: 552 FSLICAGVSPSAIAVQ-------SPYVAQVQHLRERLDD----LPEAAGVEVATIDSFQG 600
+ I + + +A + SPY AQVQ+LR ++ P + + V T+D FQG
Sbjct: 530 ENYI-RKIGENRVAEECIDFGLISPYKAQVQYLRNKIKGNPFFRPYRSRITVNTVDGFQG 588
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
+E D + IS+VR+N G +GFL D RRMNVAITRA + ++ D++T+ + F +L+ +
Sbjct: 589 QERDVIFISLVRANENGQIGFLNDLRRMNVAITRARMKLVILGDATTMSKHAFYRKLIEY 648
Query: 661 I 661
I
Sbjct: 649 I 649
>gi|423251575|ref|ZP_17232588.1| hypothetical protein HMPREF1066_03598 [Bacteroides fragilis
CL03T00C08]
gi|423254898|ref|ZP_17235828.1| hypothetical protein HMPREF1067_02472 [Bacteroides fragilis
CL03T12C07]
gi|392649760|gb|EIY43433.1| hypothetical protein HMPREF1066_03598 [Bacteroides fragilis
CL03T00C08]
gi|392653464|gb|EIY47120.1| hypothetical protein HMPREF1067_02472 [Bacteroides fragilis
CL03T12C07]
Length = 634
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 143/503 (28%), Positives = 242/503 (48%), Gaps = 65/503 (12%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDG----------IMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV + N LA+ ++ L + + +Q+ A+ L K
Sbjct: 150 TMFEALEDVIRAKGNRLAELRDILLSKQPSRWRETYPVRFPWLNSTQEAAVNKVLCAK-D 208
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 209 VAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNP 268
Query: 313 ARISPAVASKSLGEIVKSKLASFVAEFERKKS--DLRKDLRQCLKDDSLAAGIRQLLKQL 370
+R++ + S + + A + + +KS ++ +R+ + AA R + L
Sbjct: 269 SRVNDKMLSFTYERRFEGHPA-YTELWGIRKSIREMGNRMRKSSYSEREAAHSR--INHL 325
Query: 371 GKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL---------------- 412
+ + E + +++ S A+V+ +T + ++ RR T +
Sbjct: 326 RERATELEIQINEDLFSGARVIASTLVSSNHRILTGRRFTTLFIDEAAQALEAACWIAIR 385
Query: 413 VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
R I AGD CQL P I +A G+ +L+E+ A + ++ L QYRM+ +I
Sbjct: 386 KADRVIFAGDHCQLPPTIKCIEAARNGLEQTLMEKVAANKQETVSL-LKVQYRMHQSIMQ 444
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL 532
++S+ Y G L ++ V + ++D P+ +DT E H +
Sbjct: 445 FSSEWFYQGELQAAPEVTNRGILDLDL---------PMSWIDTS--------EMEFHEEF 487
Query: 533 AGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAIAVQ------SPYVAQVQHLRERLDDL 584
G SF N+ EA +++ + + I + + SPY AQVQ+LR +L
Sbjct: 488 VGE-SFGRINKPEANLLLQELEAYIRKIGEKRVLEERIDFGLISPYKAQVQYLRGKLKGC 546
Query: 585 ----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
P + + + T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITRA +
Sbjct: 547 LFFRPFRSQITIHTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAITRARMKLV 606
Query: 641 VVCDSSTICHNTFLARLLRHIRY 663
++ D+ T+ + F +L+ +IR+
Sbjct: 607 ILGDAVTMSKHAFYKKLIGYIRH 629
>gi|189463893|ref|ZP_03012678.1| hypothetical protein BACINT_00227 [Bacteroides intestinalis DSM
17393]
gi|189438466|gb|EDV07451.1| putative DNA helicase [Bacteroides intestinalis DSM 17393]
Length = 629
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 147/504 (29%), Positives = 233/504 (46%), Gaps = 70/504 (13%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTF-----------DDSQKKAIALGLNKKR 251
T+F DV + N LA+ ++ L G + F + +Q+ A+ L R
Sbjct: 147 TMFEALSDVIRAKGNRLAELRDIML-GTLKPGFRELYPVRFPWLNSTQENAVNKVL-YSR 204
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+GN
Sbjct: 205 DVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWISEKLVDRGVNVLRIGN 264
Query: 312 PARISPAVASKSL-----GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIR-- 364
P R++ + S + G S+L S R + + + +R
Sbjct: 265 PTRVNDKMLSFTYERRFEGHPAYSELWSIRKAIREMGGKHRGSYEERESARNRMSRLRDR 324
Query: 365 --QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT-------GAADPL-------IRRLD 408
QL Q+ L ++SS +L + AA L IR+ D
Sbjct: 325 ATQLEIQINADLFDNAHVITSTLVSSNHRILNGHRFGTLFIDEAAQALEAACWIAIRKAD 384
Query: 409 TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
R +LAGD CQL P I +A GG+ +L+ER ++ L QYRM++
Sbjct: 385 -------RVVLAGDHCQLPPTIKCYEAARGGLESTLMERVVANKPSTVSL-LKVQYRMHE 436
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
I + S+ Y G L ++ + ++D W T P+ +DT + +E
Sbjct: 437 EIMKFPSQWFYNGELEAAPEIRYRGILD-------WDT--PISWIDTS------EMDFKE 481
Query: 529 HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI------AVQSPYVAQVQHLRERLD 582
+ T N+ EA++++ + I + + SPY AQVQ+LR ++
Sbjct: 482 EF-VGETFGRINKAEADLLLQELKVYINRIGGKRVLEERIDFGIISPYKAQVQYLRNKIK 540
Query: 583 D----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITRA
Sbjct: 541 ASGSLKPYRSLLTVNTVDGFQGQERDVIFISLVRANEEGQIGFLNDLRRMNVAITRARMK 600
Query: 639 VAVVCDSSTICHNTFLARLLRHIR 662
+ ++ + +T+ H+ F +L+ HI+
Sbjct: 601 LVILGEVNTLKHHKFYHKLIEHIQ 624
>gi|393911179|gb|EFO25239.2| nonsense mRNA reducing factor 1 NORF1 [Loa loa]
Length = 1059
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 144/460 (31%), Positives = 217/460 (47%), Gaps = 77/460 (16%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ V+Q +VLV AP+N AVD
Sbjct: 435 LNHSQVHAVKTVL--QRPLSLIQGPPGTGKTVTSATIVYHLVKQTNGQVLVCAPSNIAVD 492
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R E + S +A F+A + K+
Sbjct: 493 QLAEKIHRTGLKVVRLCAKSR-----------ETLDSPVA-FLALHNQLKA--------- 531
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKE-----TVKE--VLSSAQVVLATNTGAADPLIRR 406
L + ++QL +++G+ E+ KE +L++A V+ T AAD +
Sbjct: 532 LHGAAELHKLQQLKEEIGELADADERRFRALRIAKECQLLAAADVICCTCVSAADSRLSH 591
Query: 407 L--------------DTFDLVGKRC-----ILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+ + +V C +L GD CQL PVI+ +KA + G+ SL ER
Sbjct: 592 MRIKCVLIDESTQATEPEVMVAVVCGVRQLVLVGDHCQLGPVIMCKKAAKAGLSQSLFER 651
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
L G +L QYRM+ A++S+ S Y GSL + T L+ + P +
Sbjct: 652 LVLL--GNRPIRLQVQYRMHPALSSFPSNVFYEGSLQNGVTEGERQLIGIDWQWP--VPD 707
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P++ YG +E L +GT SF N EA V + AG+ P I +
Sbjct: 708 KPMMFWSC---YG------QEELSSSGT-SFLNRTEAANVEKLATRFLKAGIKPEQIGII 757
Query: 568 SPYVAQVQHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGA 618
+PY Q R + + G +EVA +D+FQGRE D +I++ VRSN
Sbjct: 758 TPYEGQ----RSYIVQFMQTQGALHSKLYLEMEVANVDAFQGREKDIIIVTCVRSNDHQG 813
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
+GFL DSRR+NVA+TRA + +V ++ + + LL
Sbjct: 814 IGFLNDSRRLNVALTRAKFGLIIVGNAKVLSRHPLWNYLL 853
>gi|390444674|ref|ZP_10232447.1| ATPase AAA [Nitritalea halalkaliphila LW7]
gi|389664177|gb|EIM75683.1| ATPase AAA [Nitritalea halalkaliphila LW7]
Length = 601
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 143/484 (29%), Positives = 225/484 (46%), Gaps = 81/484 (16%)
Query: 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAA 291
+ + Q+KA L + + + ++ GPPGTGKT L + I A +VLV AP+NAA
Sbjct: 134 NRALNPPQEKACQL-IQQAEDVALVHGPPGTGKTSTLVQAILTASYTYPQVLVCAPSNAA 192
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSD-LRKDL 350
VD + E+L + GL ++R+G+PARI + + +L + + + + RKK++ LRK
Sbjct: 193 VDLLTERLGEAGLEVLRLGHPARIDAPIIASTLDARIAAHDSYKELKLLRKKAEALRKQA 252
Query: 351 RQCLKDDSLAA-GIRQLLKQLGKTLKKK----EKETVKEVLSSAQVVLATNTGAADPLIR 405
+ ++ A R Q + LK+ E +V AQV+ T GAA
Sbjct: 253 GKYKRNFGAAERAARNHALQEARMLKENARHLEDYIHYDVFQRAQVIACTLVGAASA--- 309
Query: 406 RLDTFD---------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSL 444
+LD + L R ++AGD CQL P I S +A G+ +L
Sbjct: 310 QLDGYRFPLVFIDEAAQGLEPATWIPILRADRVVMAGDHCQLPPTIKSFEAGRAGLSRTL 369
Query: 445 LERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW 504
E+ + A L QYRM + I ++++ Y G L ++ +H L
Sbjct: 370 FEKVIQ-RQPEAAVMLEVQYRMPEVIMRFSAQTFYKGKLQAAPITETHRLHPNE------ 422
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG----------SFYNEGEAEIVVHHVFSL 554
P+L E +D AGTG S NE EA ++ ++
Sbjct: 423 ----PIL----------------EFIDTAGTGFLEHKEKDSLSTLNEREAVALLRYLEQC 462
Query: 555 ICA-GVSPSA-----IAVQSPYVAQVQHLRERLDDLPEAAGVE-------VATIDSFQGR 601
I G+ I + +PY AQV+ LR + + + ++ V +ID FQG+
Sbjct: 463 IRRLGIGHMKQEGWNIGLIAPYSAQVRALRHHIFETFQFPNLKAFSELLTVNSIDGFQGQ 522
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
E D + IS+VR+N G +GFL D RRMNVA+TRA + + V+ DS+T+ H+ F A + ++
Sbjct: 523 ERDIMAISLVRANETGEIGFLSDIRRMNVALTRAKRKLIVMGDSATLSHHPFYADFIDYV 582
Query: 662 RYFG 665
G
Sbjct: 583 DRHG 586
>gi|330995988|ref|ZP_08319882.1| putative DNA helicase [Paraprevotella xylaniphila YIT 11841]
gi|329573985|gb|EGG55563.1| putative DNA helicase [Paraprevotella xylaniphila YIT 11841]
Length = 659
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 179/618 (28%), Positives = 264/618 (42%), Gaps = 101/618 (16%)
Query: 105 LSPGDMVCVRVCDSRGACATSCIQG---FVHNLGE----DGCTISVALESRHGDPTFSKL 157
PG VC D+ G G + H G DG T+ VAL T S L
Sbjct: 78 FEPGKQVCFFTQDASGELRQGNHGGRLHYFHFTGTVSFVDGNTMVVALPDTE---TLSHL 134
Query: 158 FGKSVRIDRI--QGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLE 215
G DR+ Q D TY EAL + R+ +A + +F
Sbjct: 135 RGN----DRVGAQLYLDETTYRLMFEALDRVSA----ARHGRLAELRDIF---------- 176
Query: 216 ENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA 275
+ A + + +Q+ A+ L K ++I+ GPPGTGKT L E I
Sbjct: 177 -HGTAQAGHFTFQPVRFPWLNPTQETAVNEVLRAK-DVMIVHGPPGTGKTTTLVEAIYET 234
Query: 276 VQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASF 335
+ + +VLV A +N AVD + EKL+D G+ ++R+GNP+R V K+ SF
Sbjct: 235 LHRESQVLVCAQSNMAVDWISEKLTDRGVAVLRIGNPSR-------------VNDKMLSF 281
Query: 336 VAE--FERKKS-----DLRKDLRQCL--KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVL 386
E FE S +RK +R + S Q + +L + E + +
Sbjct: 282 TYERRFEAHPSYPSLWAIRKAIRDLYAHRPSSGREAFHQKIARLRDRATELEIAINESLF 341
Query: 387 SSAQVVLATNTGAADPLI--RRLDTFDL----------------VGKRCILAGDQCQLAP 428
+ +V+ T TG+A+ ++ ++ T + R ILAGD QL P
Sbjct: 342 NETRVIACTLTGSANRVLAGKKFSTLFIDEAAQALEASCWIAIQKAGRVILAGDHRQLPP 401
Query: 429 VILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSST 488
+ +A++GG+ +L+E A ++ L TQYRMNDAI ++S+ Y G + S+
Sbjct: 402 TVKCPEAMKGGLDRTLMETIAARQPSAVSL-LRTQYRMNDAIMHFSSECFYDGKVESAPE 460
Query: 489 VASH--LLVDTPFVKPTWI------TQCPLLLLDTRLPYGSLSLGCEEHLDLAGT----- 535
V L DTP WI P L + P + + D T
Sbjct: 461 VKYRGILDWDTPM---EWIDTADEEQTAPYLTEEPSNPVSAPAPPTAGIPDFEETRNPDS 517
Query: 536 GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ-------SPYVAQVQHLRE--RLDDL-- 584
S N EA + + ++ + I + SPY QVQ LR R D
Sbjct: 518 TSRSNPEEARLTL-NILKAYFQKIGKERILAERIDTGLISPYKGQVQLLRTLLRRDAFFK 576
Query: 585 PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCD 644
P + V T+D FQG+E D ++IS+VRSN G +GFL D RRMNVAITRA + +V +
Sbjct: 577 PYRHLLSVNTVDGFQGQERDVILISLVRSNENGQIGFLHDLRRMNVAITRARMKLILVGN 636
Query: 645 SSTICHNTFLARLLRHIR 662
S T+C F + +I+
Sbjct: 637 SHTLCRTPFYKLMYSYIK 654
>gi|303283432|ref|XP_003061007.1| tRNA-splicing endonuclease positive effector [Micromonas pusilla
CCMP1545]
gi|226457358|gb|EEH54657.1| tRNA-splicing endonuclease positive effector [Micromonas pusilla
CCMP1545]
Length = 1099
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 146/477 (30%), Positives = 227/477 (47%), Gaps = 95/477 (19%)
Query: 221 DWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT----GLLKEIIARAV 276
D++ +D I K+ ++SQ+ A+ L + L ++QGPPGTGKT ++K ++A +
Sbjct: 549 DFASGAVDPI-AKSLNESQRNALRSALTNR--LTLVQGPPGTGKTYTSVAIVKGLLA--M 603
Query: 277 QQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV 336
+G VL T+ +N AVDN+V+ ++D + +VRVG E V+ +L +V
Sbjct: 604 NRGP-VLCTSDSNTAVDNLVQGMADARMRVVRVGR-------------SEAVRPELLKYV 649
Query: 337 AEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATN 396
ER +D G + L Q + L A VV T
Sbjct: 650 --LERMFNDR--------------TGPERSLAQ-------------QRALRQADVVCCTC 680
Query: 397 TGAADPLIRRLDTFDLV-----------------GKRC---ILAGDQCQLAPVILSRKAL 436
+GA ++ + + F V K C +L GD QL P + R A
Sbjct: 681 SGAGSDMLEKFN-FSAVLLDEASQVTEPSSLVPLSKGCHQLVLVGDHKQLPPTVTCRDAG 739
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
G+ SL +R A + GV L Q+RM+ A++ + S Y G + S T+A
Sbjct: 740 NAGLSTSLFDRLANM--GVKPKLLDVQFRMHPALSRFPSDAFYDGR-VKSGTLARDRPAP 796
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
+ F P P+ + +P S + G E + G GSF N+ EA++VV + L+
Sbjct: 797 SGFAWPN--AGVPIAFVPVGVPGVSGAYGGHERRE--GNGSFVNQREADVVVDVLSRLLR 852
Query: 557 AG---VSPSAIAVQSPYVAQVQHLRERL---------DDLPEAAGVEVATIDSFQGREAD 604
AG + P + V +PY AQV+H+R +L D GVEV+++D +QGRE +
Sbjct: 853 AGGGELEPRDVGVVTPYAAQVRHIRRQLRNRGIQTGIDRETGKPGVEVSSVDGYQGREKE 912
Query: 605 AVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC--HNTFLARLLR 659
+++S VRSN G +GF+ D+RR NV +TRA + V V D +T+ H T+ R LR
Sbjct: 913 VMVVSTVRSNDRGTMGFVSDARRCNVTLTRAKRGVVVCGDPNTLASDHVTW-GRWLR 968
>gi|261328192|emb|CBH11169.1| nonsense mRNA reducing factor 1, putative [Trypanosoma brucei
gambiense DAL972]
Length = 842
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 213/464 (45%), Gaps = 74/464 (15%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAV 292
+ SQ++A+ + L + PL +IQGPPGTGKT II R+LV AP+N AV
Sbjct: 371 NLNYSQEQALRVAL--RNPLTLIQGPPGTGKTSTSVAIIRELHSHVKSRILVCAPSNVAV 428
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
D++ +++S GL +VR+ R + +S+G L + +R
Sbjct: 429 DHLAQRVSGTGLKVVRLQAKYRNDIPCSVESIG--------------------LERQVRD 468
Query: 353 CLKDDSLAAGIRQLLK--QLGKTLKKKEKETVKE--------VLSSAQVVLATNTGAADP 402
+ S +++LL Q GK+L K+ T K+ +L +A VV T GA D
Sbjct: 469 YINASSGLERLKELLDSMQTGKSLNDKDYGTYKDGVEKIERLILRNADVVCCTCIGAGDY 528
Query: 403 LIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVS 443
++ + ++ K+ IL GD CQL P++ S A + G S
Sbjct: 529 RLKTMKFKHVLIDEATQGTEPEVLIPLVRGAKQVILVGDHCQLRPLVFSTAAEKAGYQRS 588
Query: 444 LLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPT 503
L ER + G +L QYRMN +++ + S Y G+L + T D V P
Sbjct: 589 LFERLVLM--GHRPVRLDVQYRMNPSLSFFPSHHYYEGTLQNGVTAEQR---DASEVFPW 643
Query: 504 WITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPS 562
P+ + + G EE L G S+ N EA + V LI GV P
Sbjct: 644 PDVTKPIFFYN--------ATGNEE---LGSNGRSYLNRAEAALTEQIVTKLIQGGVEPG 692
Query: 563 AIAVQSPYVAQVQHLRERLDD---LPEAAG--VEVATIDSFQGREADAVIISMVRSNTLG 617
I V +PY +Q ++LR L LP VE++++D+FQGRE + +I+S VRSN
Sbjct: 693 DIGVITPYRSQCRYLRSYLSRSGRLPMEVYDRVEISSVDAFQGREKEFIILSCVRSNHRQ 752
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
GF+ D RR+NV++TRA + + ++ + LL H+
Sbjct: 753 GAGFVTDGRRLNVSLTRAKRGLIIMGNVQLFSRYPGWHELLVHM 796
>gi|298715439|emb|CBJ28050.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1242
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 127/226 (56%), Gaps = 25/226 (11%)
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV---------------KPTW 504
L QYRMN I WAS EMYGG L++ +VA L D P +
Sbjct: 542 LNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHTSAAAASSSSSTKEEEEGAE 601
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
+ +LL+DT GC+ + AG GS NE EAE+ V HV L+ AGV S +
Sbjct: 602 MWAAVMLLVDT--------TGCDMPEEDAGGGSRRNEREAEVAVRHVKGLLNAGVRESEV 653
Query: 565 AVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
AV SPY QV L+ L PE GVEV ++D FQG E +A+++S+VRSN VGFL D
Sbjct: 654 AVISPYNGQVNLLKRLLR--PEHPGVEVRSVDGFQGGEKEAIVLSLVRSNAGKKVGFLAD 711
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+RR+NVA+TRA +HVA+VCD+ + F+ RLLRH+ G + A
Sbjct: 712 ARRLNVAVTRAKRHVAIVCDAECCGSDPFIGRLLRHVEDRGEYRSA 757
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 202/511 (39%), Gaps = 137/511 (26%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++E+ + +LLR+ERD E+E +N + + + +E VS +
Sbjct: 18 INEWARVQRKLLRLERDEEVEQVAGMINQL-------TAQECMERGVS-----------L 59
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGA-----CATSCI 127
L V STGL G V LP L GD V R+ S+G S I
Sbjct: 60 VPLAVTGLSTGLYGRACVSVGDPKGRPLPAHRLGAGDQV--RLYSSKGGKGDVEGGISEI 117
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
G V + E T+ V E D + +R+D + A T+++ L L+
Sbjct: 118 SGVVGKVTEG--TVEVISE----DADDAGSLRAPLRLDVV---ASEATHKKLMLGLDALE 168
Query: 188 K-----------NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFD 236
K N L P AA V G L + ++ +
Sbjct: 169 KYPGGGPAERVINVLFGSEPPSAAAVAPTGP---------------PAATLSSLALRSLN 213
Query: 237 DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMV 296
DSQ++A+A L R + +I GPPGTGKT + ++ AV +G R LV AP+N AVD M+
Sbjct: 214 DSQREAVAFAL-ATRDVALIHGPPGTGKTTTVVALVQEAVARGWRCLVCAPSNVAVDGML 272
Query: 297 EKLSDVGL-----------------------------NIVRVGNPARISPAVASKSLGEI 327
EKL G +VR+G+PAR+ P V S+ +
Sbjct: 273 EKLVAAGEEGGGGSAGGGGGGGGGGGGYGGKNIGGRPRVVRMGHPARLLPQVLEHSMEAL 332
Query: 328 VKSKLASFVAEFERKKSDLRKDLRQCL-------------------KDDSLAAGIRQLLK 368
V + + + D+RKD+ L + IR +
Sbjct: 333 VSRHEGTAIVK------DVRKDIDTLLGRLHGESGTGGGGGSGGAGGVSKSRSRIRGADR 386
Query: 369 QLGK--TLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
+ + + +E + V+EVL S VVLAT GAA +R + FDLV
Sbjct: 387 KGARMEEARAREGKVVQEVLRSRDVVLATCVGAATHSLRE-EEFDLVVIDEAAQALEAAC 445
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEG 438
G+R +LAGD QLAP + SRKA G
Sbjct: 446 WIPILKGRRLVLAGDHKQLAPTVKSRKAEAG 476
>gi|401402591|ref|XP_003881287.1| putative regulator of nonsense transcripts UPF1 [Neospora caninum
Liverpool]
gi|325115699|emb|CBZ51254.1| putative regulator of nonsense transcripts UPF1 [Neospora caninum
Liverpool]
Length = 1428
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 231/482 (47%), Gaps = 92/482 (19%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ----------------- 277
+ SQ AI L + PL +IQGPPGTGKT ++ + V+
Sbjct: 609 LNPSQMLAIRYAL--QHPLSLIQGPPGTGKTLTSSTLVYQMVKLSEMGSHVHPRGTGGFN 666
Query: 278 -QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLA--S 334
G +VLV AP+N AVD + E+++ GL ++R+ + +R A+ SL LA
Sbjct: 667 KDGGQVLVVAPSNVAVDQLAERINRTGLKVIRMYSKSREG---AASSLTSFCMEHLALHK 723
Query: 335 FVAEFERKKSD-LRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL 393
V E + SD + K L+ + LAA + L+ L + + E E +L +A V+
Sbjct: 724 KVLELKTAGSDEMAKYLQLKEQTGELAAADERRLRLL---ISRAEME----ILQTADVIC 776
Query: 394 ATNTGAADPLIRRLDTFD----------------------LVGKRCILAGDQCQLAPVIL 431
T GA D RL F L K+ +L GD CQL PV+L
Sbjct: 777 TTCVGAGD---NRLQGFRFRQVVIDEAAQATEPECLIPIVLGAKQVVLIGDHCQLGPVVL 833
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
S+KA G+ SL R L G +L QYRM+ A++ + S Y G L + T+
Sbjct: 834 SKKAAAAGLATSLFSRLLAL--GHRPLRLKVQYRMHPALSFFPSYFFYEGELQNGVTMTE 891
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTRLPYGS--------LSLGCEEHLDLAGTGSFY-NEG 542
T+ + P + R P+ S S EE ++G+G+ Y N
Sbjct: 892 R----------TYFHRGP---GEHRFPWPSEERPMFFYHSTASEE---ISGSGTSYVNRV 935
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---LRERLDDLPEA--AGVEVATIDS 597
EA + V L+ G+ S I V +PY Q H L +R L +A A +EVA++D+
Sbjct: 936 EASNIEKIVTFLLKCGLKASQIGVITPYDGQRAHISSLFQRQTTLGQAAFADLEVASVDA 995
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
FQGRE D +++S VRSN+ +GFL DSRR+NVA+TRA K+ ++C ++++ N ++ R+
Sbjct: 996 FQGREKDFILLSCVRSNSNTGIGFLADSRRLNVAMTRA-KYGLIICGNASVLAN-YMPRV 1053
Query: 658 LR 659
R
Sbjct: 1054 AR 1055
>gi|72389186|ref|XP_844888.1| regulator of nonsense transcripts 1 [Trypanosoma brucei TREU927]
gi|62359996|gb|AAX80419.1| regulator of nonsense transcripts 1, putative [Trypanosoma brucei]
gi|70801422|gb|AAZ11329.1| regulator of nonsense transcripts 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 842
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 216/462 (46%), Gaps = 70/462 (15%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAV 292
+ SQ++A+ + L + PL +IQGPPGTGKT II R+LV AP+N AV
Sbjct: 371 NLNYSQEQALRVAL--RNPLTLIQGPPGTGKTSTSVAIIRELHSHVKSRILVCAPSNVAV 428
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
D++ +++S GL +VR+ R + +S+G L V ++ S L + L++
Sbjct: 429 DHLAQRVSGTGLKVVRLQAKYRNDIPCSVESIG------LERQVGDYINASSGLER-LKE 481
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKE--------VLSSAQVVLATNTGAADPLI 404
L DS+ Q GK+L K+ T K+ +L +A VV T GA D +
Sbjct: 482 LL--DSM---------QTGKSLNDKDYGTYKDGVEKIERLILRNADVVCCTCIGAGDYRL 530
Query: 405 RRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
+ + ++ K+ IL GD CQL P++ S A + G SL
Sbjct: 531 KTMKFKHVLIDEATQGTEPEVLIPLVRGAKQVILVGDHCQLRPLVFSTAAEKAGYQRSLF 590
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI 505
ER + G +L QYRMN +++ + S Y G+L + T D V P
Sbjct: 591 ERLVLM--GHRPVRLDVQYRMNPSLSFFPSHHYYEGTLQNGVTAEQR---DASEVFPWPD 645
Query: 506 TQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAI 564
P+ + + G EE L G S+ N EA + V LI GV P I
Sbjct: 646 VTKPIFFYN--------ATGNEE---LGSNGRSYLNRAEAALTEQIVTKLIQGGVEPGDI 694
Query: 565 AVQSPYVAQVQHLRERLDD---LPEAAG--VEVATIDSFQGREADAVIISMVRSNTLGAV 619
V +PY +Q ++LR L LP VE++++D+FQGRE + +I+S VRSN
Sbjct: 695 GVITPYRSQCRYLRSYLSRSGRLPMEVYDRVEISSVDAFQGREKEFIILSCVRSNHRQGA 754
Query: 620 GFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
GF+ D RR+NV++TRA + + ++ + LL H+
Sbjct: 755 GFVTDGRRLNVSLTRAKRGLIIMGNVQLFSRYPGWHELLVHM 796
>gi|423302630|ref|ZP_17280652.1| hypothetical protein HMPREF1057_03793 [Bacteroides finegoldii
CL09T03C10]
gi|408470506|gb|EKJ89040.1| hypothetical protein HMPREF1057_03793 [Bacteroides finegoldii
CL09T03C10]
Length = 628
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 136/450 (30%), Positives = 212/450 (47%), Gaps = 66/450 (14%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
R + I+ GPPGTGKT L E I + + +V+V +N AVD + EKL D G+ ++R+G
Sbjct: 204 RDVSIVHGPPGTGKTTTLVEAIYETLHREPQVMVCTQSNTAVDWICEKLVDRGVPVLRIG 263
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA 360
NP R V K+ SF E FE + +RK +R+ ++ S
Sbjct: 264 NPTR-------------VNDKMLSFTYERRFESHPAYPELWGIRKSIREMGGRMRRGSYE 310
Query: 361 A--GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL---- 412
G+R + +L + E + ++ SA+V+ +T + L+ RR T +
Sbjct: 311 EREGMRSRMSRLRDRATELEIQINADLFDSARVIASTLVSSNHRLLNGRRFPTLFIDEAA 370
Query: 413 ------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
R +LAGD CQL P I +A GG+ +L+E+ ++ L
Sbjct: 371 QALEAACWIAIRKTDRVVLAGDHCQLPPTIKCIEAARGGLEYTLMEKVVRQKPSSVSL-L 429
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP-TWITQCPLLLLDTRL-- 517
QYRMN+AI + S Y G L ++ V ++D F P +WI + + +
Sbjct: 430 KVQYRMNEAIMQFPSDWFYQGELEAAPEVRYRGILD--FDSPMSWIDTSEMEFHEEFIGE 487
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV-FSLICAGVSPSAIAVQSPYVAQVQH 576
+G ++ L G+ I+ + F LI SPY AQVQ+
Sbjct: 488 SFGRINKQEANLLLEELEAYINRIGKERILEERIDFGLI------------SPYKAQVQY 535
Query: 577 LRERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
LR ++ P + + V T+D FQG+E D V IS+VR+N G +GFL D RRMNVAI
Sbjct: 536 LRSKIKGSSFLRPLRSLITVNTVDGFQGQERDVVFISLVRANEEGQIGFLNDLRRMNVAI 595
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIR 662
TRA + ++ +++T+ + F RL+ I+
Sbjct: 596 TRARMKLVILGEAATLTKHPFYKRLMAFIK 625
>gi|341875677|gb|EGT31612.1| hypothetical protein CAEBREN_16388 [Caenorhabditis brenneri]
Length = 834
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 132/452 (29%), Positives = 221/452 (48%), Gaps = 49/452 (10%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288
G + +++Q KA+ + LN++R ++ IQGPPGTGKT +L I+A + ++ +V PT
Sbjct: 356 GSQQNSLNETQYKALKMALNEQRKVVCIQGPPGTGKTFVLAHILATLIFGEKQAIVLTPT 415
Query: 289 NAAVDN---MVEKL---SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER- 341
A+ N M EK+ ++ + + + + AV + E K K+A + F+
Sbjct: 416 KEALKNIMIMTEKVIKEKNLECHDKTLMDQVKFEKAVNNSPAAEDAKEKIAQWDENFKNN 475
Query: 342 --KKSDLRKDLRQCLKDDSLAAGIRQLLKQ------------LGKTLKKKEKETVKEVLS 387
K +D D++ L + + A +++KQ + T+K K V+
Sbjct: 476 MLKFADFY-DMKTNLINRTFAEVGTEIMKQTRIVFATIQSSFVDTTMKYKIFNPCMCVID 534
Query: 388 SAQVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
A V+ T T P + R+ KR ILAGD QL ++LS KA + S+++R
Sbjct: 535 EAAQVMETQTW---PAVIRM-------KRIILAGDPKQLPALVLSAKAKAAKLEDSIMDR 584
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSS----TVASHLLVDTP----- 498
E L QYR + I +W++K Y G+L + + T+ ++ ++ P
Sbjct: 585 IIHNKEKFSWIMLDEQYRCHPNIIAWSNKSFYDGALKNKTSEDNTIRNNFKIEAPPQFRN 644
Query: 499 -FVKPTWITQCPLLLLDTRLPYGSL-SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
F + D R L ++G + D + S+ NEGEA +V+ H L
Sbjct: 645 LFDAAVLVDTSSETDPDRRETLHELFTVGPSPNEDGGSSRSYKNEGEARLVLLHYKHLRE 704
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG------VEVATIDSFQGREADAVIISM 610
G+ IA+ +PY AQ + +++ + ++ E G ++ T+D QG+E D VI SM
Sbjct: 705 LGIEAKNIAIITPYRAQTELIKQGMANIIEDDGDLSCSETKIGTVDGVQGQEYDCVIFSM 764
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
VRSN A+GF+GD RR+NVA+TRA +H+ +
Sbjct: 765 VRSNPRNAMGFVGDLRRLNVAMTRAKRHLMFI 796
>gi|401827897|ref|XP_003888241.1| superfamily I DNA/RNA helicase [Encephalitozoon hellem ATCC 50504]
gi|392999441|gb|AFM99260.1| superfamily I DNA/RNA helicase [Encephalitozoon hellem ATCC 50504]
Length = 771
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 212/438 (48%), Gaps = 54/438 (12%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDN 294
+ SQ+ A+ L +K + +IQGPPGTGKT + I+ V+ G +VLV AP+N AVD
Sbjct: 332 NASQETAVRAALGRK--VTLIQGPPGTGKTLVSSAIVYNFVKHYGGKVLVVAPSNTAVDQ 389
Query: 295 MVEKLSDVGLNIVRVGNPARI--SPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD--L 350
+ K+ GL ++RV + R V+ SL E +K + E +KK + +D
Sbjct: 390 LTLKIHKTGLKVLRVMSRRRECGQSDVSFLSLHENLKE-----LQEGRKKKDEACRDNGR 444
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVV--LATNTGAADPLIRRLD 408
+ +D + +R+ L L + E T V S ++ + D ++ +
Sbjct: 445 YSSIYNDEASESLRKQL------LNQAEVITCTCVTSGQKMFNKFRFHYVLIDEAVQSTE 498
Query: 409 TFDLV-----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQ 463
L+ K+ +L GD QL P IL +K + G SL ER ++ GV+ L+ Q
Sbjct: 499 PLSLIPLVYGCKKLVLVGDHKQLGPTILCKKVAQAGFKQSLFERLISI--GVVPYVLSVQ 556
Query: 464 YRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLS 523
YRM+ + W S+ Y G L++ + P + C YG
Sbjct: 557 YRMDTDLCEWPSEMFYNGELLTGGKGFCRFDLGIP---TNFFYVC----------YG--- 600
Query: 524 LGCEEHLDLAGTGSFYNEGEA---EIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRER 580
E + +GT SF N+ EA E ++ H+F GV+ S I V +PY Q ++ R
Sbjct: 601 ---REEVSASGT-SFINQAEALYCESIIRHLFK---CGVTESQIGVITPYEGQRSYILNR 653
Query: 581 LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+ E +E++ +D FQGRE D +I+S+VRSN +GF+GD RRMNV +TRA +
Sbjct: 654 IFG-AEPGNLEISNVDGFQGREKDFIIVSLVRSNLYQGIGFVGDKRRMNVTLTRAKHGLV 712
Query: 641 VVCDSSTICHNTFLARLL 658
++ + +T+ + + LL
Sbjct: 713 IIGNPTTLMKHDIWSNLL 730
>gi|396082359|gb|AFN83969.1| putative DNA helicase [Encephalitozoon romaleae SJ-2008]
Length = 779
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/448 (29%), Positives = 215/448 (47%), Gaps = 74/448 (16%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDN 294
+ SQ+ A+ L +K + +IQGPPGTGKT + I+ V+ G +VLV AP+N AVD
Sbjct: 340 NTSQETAVRAALGRK--VTLIQGPPGTGKTLVSSSIVYNFVKHYGGKVLVVAPSNTAVDQ 397
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE--RKKSDLRKDLRQ 352
+ K+ GL ++RV + R E +S + SF++ E R+ + RK +
Sbjct: 398 LTLKIHKTGLKVLRVMSRRR-----------ECGQSDV-SFLSLHENLRELQEGRKKKDE 445
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR------ 406
+D+ I ++ ++LK K++L+ A+V+ T + + +
Sbjct: 446 GCRDNGRYNSIYN--DEVSESLK-------KQLLNQAEVITCTCVTSGQKMFNKFRFHYV 496
Query: 407 -----------LDTFDLVG--KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
L LV K+ +L GD QL P IL +K + G SL ER ++
Sbjct: 497 LIDEAVQSTEPLSLIPLVYGCKKLVLVGDHKQLGPTILCKKVAQAGFKQSLFERLISI-- 554
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
GV+ L+ QYRM+ + W S+ Y G L++ + P + C
Sbjct: 555 GVVPYVLSIQYRMDTDLCEWPSEMFYNGELLTGGKRFCRFDLGIP---TNFFYVC----- 606
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEA---EIVVHHVFSLICAGVSPSAIAVQSPY 570
YG E + +GT SF N+ EA E ++ H+F GV+ + I V +PY
Sbjct: 607 -----YG------REEVSASGT-SFINQAEALYCESIIRHLFK---CGVTENQIGVITPY 651
Query: 571 VAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
Q ++ R+ E +E++ +D FQGRE D +I+S+VRSN +GF+GD RRMNV
Sbjct: 652 EGQRSYILNRIFG-AEPGNLEISNVDGFQGREKDFIIVSLVRSNLYQGIGFVGDKRRMNV 710
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLL 658
+TRA + ++ + +T+ + + LL
Sbjct: 711 TLTRAKHGLVIIGNPTTLMKHDMWSNLL 738
>gi|332878015|ref|ZP_08445745.1| putative DNA helicase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357047737|ref|ZP_09109335.1| putative DNA helicase [Paraprevotella clara YIT 11840]
gi|332683977|gb|EGJ56844.1| putative DNA helicase [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355529425|gb|EHG98859.1| putative DNA helicase [Paraprevotella clara YIT 11840]
Length = 659
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 154/494 (31%), Positives = 233/494 (47%), Gaps = 64/494 (12%)
Query: 217 NDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV 276
+D A I + +Q+ A+ L K ++I+ GPPGTGKT L E I +
Sbjct: 177 HDTAQAGHFSFQPIRFPWLNPTQETAVNEVLRAK-DVMIVHGPPGTGKTTTLVEAIYETL 235
Query: 277 QQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFV 336
+ +VLV A +N AVD + EKL+D G+ ++RVGNP+R++ + S + K+ S+
Sbjct: 236 HRESQVLVCAQSNMAVDWISEKLTDRGVAVLRVGNPSRVNDKMLSFTYERRFKAH-PSYP 294
Query: 337 AEFERKKSDLRKDLRQCL--KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLA 394
+ + +RK +R + S Q + +L + E + + + A+V+
Sbjct: 295 SLWA-----IRKAIRDLYARRPSSGREAFHQKVARLRDRATELEIAINESLFNEARVIAC 349
Query: 395 TNTGAADPLI--RRLDTFDL-----------------VGKRCILAGDQCQLAPVILSRKA 435
T G+A+ ++ ++ T + VG R ILAGD QL P + +A
Sbjct: 350 TLAGSANRVLAGKKFPTLFIDEAAQALEASCWIAIQKVG-RVILAGDHRQLPPTVKCPEA 408
Query: 436 LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--L 493
L+GG+ +L+E A H ++ L TQYRMND I ++S+ Y G + S+ V L
Sbjct: 409 LKGGLDRTLMETIAARHPSAVSL-LRTQYRMNDVIMRFSSECFYDGKVESAPEVKYRGIL 467
Query: 494 LVDTPFVKPTWI------TQCPLLLLDTRLPYGSL---SLGCEEHLDLAGT-----GSFY 539
DTP WI P L T P G++ +L E D T S
Sbjct: 468 DWDTPM---EWIDTADEEQTAPYL---TEEPSGAVCAPALPAVEVPDFGETRNPDSTSRS 521
Query: 540 NEGEAEIVVHHVFSLICAGVSPSAIAVQ-------SPYVAQVQHLRE--RLDDL--PEAA 588
N EA + + ++ + I + SPY QVQ LR R D P
Sbjct: 522 NPEEARLTL-NILKAYFQKIGKERILAERIDTGIISPYKGQVQLLRALLRRDAFFKPYRH 580
Query: 589 GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+ V T+D FQG+E D ++IS+VRSN G +GFL D RRMNVAITRA + +V +S T+
Sbjct: 581 LLSVNTVDGFQGQERDVILISLVRSNENGQIGFLHDLRRMNVAITRARMKLILVGNSHTL 640
Query: 649 CHNTFLARLLRHIR 662
C F L +I+
Sbjct: 641 CRTPFYKLLHGYIK 654
>gi|145491971|ref|XP_001431984.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399091|emb|CAK64586.1| unnamed protein product [Paramecium tetraurelia]
Length = 935
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 140/464 (30%), Positives = 215/464 (46%), Gaps = 79/464 (17%)
Query: 237 DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER------VLVTAPTNA 290
D+ KKA+ K PL +IQGPPGTGKT I+ + V+ E+ +LV AP+N
Sbjct: 381 DAVKKAL------KSPLSLIQGPPGTGKTVTSATIVYQLVKAMEKQKQRGQILVCAPSNI 434
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK-D 349
VD + EK++ G+ +VR+ + R S S EF S +R D
Sbjct: 435 VVDQLAEKINKTGVKVVRLCSKTRES----------------VSTNIEFLTLHSQVRSLD 478
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEK-------ETVKEVLSSAQVVLATNTGAADP 402
+ Q + +LL Q G+ +K E+ E KE++ A ++ T G+AD
Sbjct: 479 IPQYHQ----LQAFYELLDQQGELDQKDEQVFIRMRDEAEKEIIEQADIICTTCIGSADK 534
Query: 403 LIRRLD-TFDLV------------------GKRCILAGDQCQLAPVILSRKALEGGIGVS 443
++ + F L+ K IL GD QL PV+ SR+A G+ S
Sbjct: 535 RLKEMRFLFVLIDEATQAIEPECLLPMLKGAKHVILVGDHRQLGPVVQSREAASVGLDRS 594
Query: 444 LLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPT 503
L ER L G+ +L QYRM+ + + S Y G+L + T++ F P
Sbjct: 595 LFERLVQL--GIRPVRLQVQYRMHPELTVFPSNTFYEGTLQNGVTISDRTHSGN-FPWPN 651
Query: 504 WITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA 563
Q P++ ++ + +E L +GT S+ N EA V V+ L V +
Sbjct: 652 --KQKPMIFIN---------VTGQEQLSASGT-SYLNTQEAVAVEQAVYYLYQNTVKLNK 699
Query: 564 IAVQSPYVAQVQHLR---ERLDDLP--EAAGVEVATIDSFQGREADAVIISMVRSNTLGA 618
I + +PY Q ++ +R LP + +EVA++D FQGRE D +IIS VRSN
Sbjct: 700 IGIITPYKGQRTYILSYLQRNGQLPYNQYRDIEVASVDGFQGREKDFIIISCVRSNDTQG 759
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+GFL + RR+NV ITRA + V+ ++ + + +L H +
Sbjct: 760 IGFLTNPRRLNVTITRARYGLIVIGNARVLSKDNLWNNMLNHFK 803
>gi|423260347|ref|ZP_17241269.1| hypothetical protein HMPREF1055_03546 [Bacteroides fragilis
CL07T00C01]
gi|423266481|ref|ZP_17245483.1| hypothetical protein HMPREF1056_03170 [Bacteroides fragilis
CL07T12C05]
gi|387775493|gb|EIK37600.1| hypothetical protein HMPREF1055_03546 [Bacteroides fragilis
CL07T00C01]
gi|392701058|gb|EIY94219.1| hypothetical protein HMPREF1056_03170 [Bacteroides fragilis
CL07T12C05]
Length = 634
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 146/513 (28%), Positives = 240/513 (46%), Gaps = 85/513 (16%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDG----------IMGKTFDDSQKKAIALGLNKKRP 252
T+F EDV + N LA+ ++ L + + +Q+ A+ L K
Sbjct: 150 TMFEALEDVIRAKGNRLAELRDILLSKQPSCWRATYPVRFPWLNSTQEAAVNKVLCAK-D 208
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+ ++R+GNP
Sbjct: 209 VAIVHGPPGTGKTTTLVEAIYETLHRENQVLVCAQSNTAVDWIAEKLVDRGVPVLRIGNP 268
Query: 313 ARISPAVASKSLGEIVKSKLASFVAE--FERKKS-----DLRKDLRQC---LKDDSLA-- 360
+R V K+ SF E FE + +RK +R+ ++ S +
Sbjct: 269 SR-------------VNDKMLSFTYERRFEGHPAYTELWGIRKSIREMGNRMRKSSYSER 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL------ 412
R + L + + E + +++ S A+V+ +T + ++ R T +
Sbjct: 316 EAARSRINHLRERATELEIQINEDLFSGARVIASTLVSSNHRILTGWRFTTLFIDEAAQA 375
Query: 413 ----------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTT 462
R I AGD CQL P I +A G+ +L+E+ A + ++ L
Sbjct: 376 LEAACWIAIRKADRVIFAGDHCQLPPTIKCIEAARNGLEQTLMEKVAANKQETVSL-LKV 434
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ +I ++S+ Y G L ++ V + ++D P+ +DT
Sbjct: 435 QYRMHQSIMQFSSEWFYQGELQAAPEVTNRGILDLDL---------PMSWIDTS------ 479
Query: 523 SLGCEEHLDLAGTGSF--YNEGEAEIVVHHVFSLICAGVSPSAI------AVQSPYVAQV 574
E H + G SF N+ EA +++ + + I + + SPY AQV
Sbjct: 480 --EMEFHEEFVGE-SFGRINKPEANLLLQELEAYIRKIGEKRVLEERIDFGLISPYKAQV 536
Query: 575 QHLRERLDDL----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
Q+LR +L P + + + T+D FQG+E D + IS+VR+N G +GFL D RRMNV
Sbjct: 537 QYLRGKLKGCLFFRPFRSQITIHTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNV 596
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIRY 663
AITRA + ++ D+ T+ + F +L+ +IR+
Sbjct: 597 AITRARMKLVILGDAVTMSKHAFYKKLIGYIRH 629
>gi|47217411|emb|CAG00771.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1186
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 139/484 (28%), Positives = 220/484 (45%), Gaps = 94/484 (19%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 478 QRPLSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIHKTGLKVVR 537
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E ++S ++ + D +L+ Q LKD++ L++
Sbjct: 538 LCAKSR-----------EAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGELSSADE 586
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD---------------- 408
+ + L +T ++ E+L +A V+ T GA DP + ++
Sbjct: 587 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 639
Query: 409 ---------------------------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIG 441
++ + IL GD CQL PV++ +KA + G+
Sbjct: 640 CMVPVVLGAKQVHTHTHTRAHNNRPCFSYPPSCPQLILVGDHCQLGPVVMCKKAAKAGLS 699
Query: 442 VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL---ISSSTVASHLLVDTP 498
SL ER L G+ +L QYRM+ A++++ S Y GSL +++ ++ + L
Sbjct: 700 QSLFERLVVL--GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGWISLNALEMNA 757
Query: 499 FVKPTWITQCPLLLLDTRLPYG--------------SLSLGCEEHLDLAGTG-SFYNEGE 543
VK +Q LL R+ G ++ G EE +A +G S+ N E
Sbjct: 758 TVKSEPHSQIGCLLAGDRIKKGFDFQWPQPEKPMFFYVTQGQEE---IASSGTSYLNRTE 814
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-----DLPEAAGVEVATIDSF 598
A V L+ AG P I + +PY Q +L + + VE+A++D+F
Sbjct: 815 AANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQQVEIASVDAF 874
Query: 599 QGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
QGRE D +I+S VR+N +GFL D RR+NVA+TRA V +V + + LL
Sbjct: 875 QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLL 934
Query: 659 RHIR 662
+ +
Sbjct: 935 NNYK 938
>gi|392512894|emb|CAD25885.2| INVOLVED IN mRNA DECAY CONTROL (DNA2/NAM7 HELICASE FAMILY)
[Encephalitozoon cuniculi GB-M1]
Length = 776
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 203/444 (45%), Gaps = 73/444 (16%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMV 296
SQ+ A+ L +K + +IQGPPGTGKT + I+ V+ G +VLV AP+N AVD +
Sbjct: 342 SQEVAVRAALGRK--VTLIQGPPGTGKTLVSSAIVYNLVRHYGGKVLVVAPSNTAVDQLT 399
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKD 356
K+ GL ++RV + R G+ S L+ E ++ RKD D
Sbjct: 400 LKIHKTGLRVLRVMSRRR--------EYGQSDVSFLSLHENLRELQEGRKRKDEDHSRYD 451
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR---------- 406
+ + LK K++L+ A+V+ T + + R
Sbjct: 452 SIYNDEVNESLK--------------KQLLNQAEVITCTCVTSGQKMFNRFKFHCVLIDE 497
Query: 407 -------LDTFDLVG--KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
L LV K+ +L GD QL P IL +K + G SL ER ++ GV+
Sbjct: 498 AVQSTEPLSLIPLVYGCKKLVLVGDHKQLGPTILCKKVAQAGFKQSLFERLISI--GVVP 555
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
L+ QYRM+ + W S+ Y G L++ + P + C
Sbjct: 556 YMLSVQYRMDADLCEWPSEMFYNGELLTGGKNFCRFDLGIPV---NFFYVC--------- 603
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEA---EIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
YG E + +GT SF N+ EA E ++ H+F GV+ S I V +PY Q
Sbjct: 604 -YG------REEVSASGT-SFVNQAEALYCESIIRHLFK---CGVTESQIGVITPYEGQR 652
Query: 575 QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
++ R+ E +E++ +D FQGRE D +I+S+VRSN +GF+GD RRMNV +TR
Sbjct: 653 SYILNRIFG-AEPGNLEISNVDGFQGREKDFIIVSLVRSNLYQGIGFVGDKRRMNVTLTR 711
Query: 635 ACKHVAVVCDSSTICHNTFLARLL 658
A + ++ + T+ + LL
Sbjct: 712 AKHGLVIIGNPMTLMKHDMWGNLL 735
>gi|19074775|ref|NP_586281.1| INVOLVED IN mRNA DECAY CONTROL (DNA2/NAM7 HELICASE FAMILY)
[Encephalitozoon cuniculi GB-M1]
gi|449329865|gb|AGE96133.1| mRNA decay control [Encephalitozoon cuniculi]
Length = 782
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 203/444 (45%), Gaps = 73/444 (16%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMV 296
SQ+ A+ L +K + +IQGPPGTGKT + I+ V+ G +VLV AP+N AVD +
Sbjct: 348 SQEVAVRAALGRK--VTLIQGPPGTGKTLVSSAIVYNLVRHYGGKVLVVAPSNTAVDQLT 405
Query: 297 EKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKD 356
K+ GL ++RV + R G+ S L+ E ++ RKD D
Sbjct: 406 LKIHKTGLRVLRVMSRRR--------EYGQSDVSFLSLHENLRELQEGRKRKDEDHSRYD 457
Query: 357 DSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR---------- 406
+ + LK K++L+ A+V+ T + + R
Sbjct: 458 SIYNDEVNESLK--------------KQLLNQAEVITCTCVTSGQKMFNRFKFHCVLIDE 503
Query: 407 -------LDTFDLVG--KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
L LV K+ +L GD QL P IL +K + G SL ER ++ GV+
Sbjct: 504 AVQSTEPLSLIPLVYGCKKLVLVGDHKQLGPTILCKKVAQAGFKQSLFERLISI--GVVP 561
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
L+ QYRM+ + W S+ Y G L++ + P + C
Sbjct: 562 YMLSVQYRMDADLCEWPSEMFYNGELLTGGKNFCRFDLGIPV---NFFYVC--------- 609
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEA---EIVVHHVFSLICAGVSPSAIAVQSPYVAQV 574
YG E + +GT SF N+ EA E ++ H+F GV+ S I V +PY Q
Sbjct: 610 -YG------REEVSASGT-SFVNQAEALYCESIIRHLFK---CGVTESQIGVITPYEGQR 658
Query: 575 QHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
++ R+ E +E++ +D FQGRE D +I+S+VRSN +GF+GD RRMNV +TR
Sbjct: 659 SYILNRIFG-AEPGNLEISNVDGFQGREKDFIIVSLVRSNLYQGIGFVGDKRRMNVTLTR 717
Query: 635 ACKHVAVVCDSSTICHNTFLARLL 658
A + ++ + T+ + LL
Sbjct: 718 AKHGLVIIGNPMTLMKHDMWGNLL 741
>gi|374723515|gb|EHR75595.1| putative DNA helicase [uncultured marine group II euryarchaeote]
Length = 662
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 144/457 (31%), Positives = 224/457 (49%), Gaps = 59/457 (12%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAP 287
G+ T + SQ+ A+ L ++ L +IQGPPGTGKT +++ V G +L TA
Sbjct: 208 GLAAMTLNPSQRAAVESALERR--LTLIQGPPGTGKTHTAVHLLSALVNIGRGPILATAE 265
Query: 288 TNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSD-L 346
+N AVDN++E L ++G+ VR+G P ++ + +L ++ F R+++D L
Sbjct: 266 SNVAVDNLLEGLLELGVKAVRIGRPVKVREHLRQATLDAQIERHPLQEELRFVREQNDEL 325
Query: 347 RKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR 406
R+ L LK + + + K ++ E + VL A+V+ AT G L+R
Sbjct: 326 RRSL-SGLKGKEKGMAHKDVNRNF-KEMRSIEANMIASVLDGAEVICATTIGVGHKLLRD 383
Query: 407 LDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLE 446
F +V ++ +L GD QL P ++S A +GG+G SL E
Sbjct: 384 -RRFPVVLMDEATQASEPSALVPITRGCRQLVLVGDHKQLPPTVISEAAQQGGLGQSLFE 442
Query: 447 RAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP----FVKP 502
R G+ LTTQYRM+ I + S Y L T A D P F+ P
Sbjct: 443 RLTEC--GLDTHMLTTQYRMHPTIREYPSARFYEDRLDDGCTPA-----DRPPAAGFLWP 495
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG-VSP 561
W + +D GS E +D G+ S N EA V+ V L+ AG ++P
Sbjct: 496 DWDHPVAFVPID-----GS------EIVDEEGS-SKSNLDEAAKVLSIVNGLLSAGDLTP 543
Query: 562 SAIAVQSPYVAQVQHLRE-------RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
+ I V +PY QV+ L + R + P AG+E+ ++D +QGRE + ++ S VR+N
Sbjct: 544 ADIGVITPYSGQVRLLVDLFEQAGGREEGAP-YAGLEIKSVDGYQGREKEIIVFSAVRAN 602
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
G +GFL D RR+NVAITRA + + V+ ++ T+ H+
Sbjct: 603 EHGEIGFLRDRRRLNVAITRARRGLIVLGNTKTLRHD 639
>gi|170593003|ref|XP_001901254.1| Regulator of nonsense transcripts 1 homolog [Brugia malayi]
gi|158591321|gb|EDP29934.1| Regulator of nonsense transcripts 1 homolog, putative [Brugia
malayi]
Length = 1112
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 148/476 (31%), Positives = 224/476 (47%), Gaps = 74/476 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ V+Q +VLV AP+N AVD
Sbjct: 435 LNHSQVHAVKTVL--QRPLSLIQGPPGTGKTVTSATIVYHLVKQTNGQVLVCAPSNIAVD 492
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R E + S +A F+A L LR
Sbjct: 493 QLAEKIHRTGLKVVRLCAKSR-----------ETLDSPVA-FLA--------LHNQLR-A 531
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKE-----TVKE--VLSSAQVVLATNTGAADPLIRR 406
L + ++QL +++G+ E+ KE +L++A V+ T AAD +
Sbjct: 532 LHGAAELHKLQQLKEEMGELADADERRFRALRIAKECQLLTAADVICCTCVSAADSRLSH 591
Query: 407 L--------------DTFDLVGKRC-----ILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+ + +V C +L GD CQL PVI+ +KA + G+ SL ER
Sbjct: 592 MRIKCVLIDESTQATEPEVMVAVVCGVRQLVLVGDHCQLGPVIMCKKAAKAGLSQSLFER 651
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFV----KPT 503
L G +L QYRM+ A++S+ S Y GSL + T HL + V
Sbjct: 652 LVLL--GNRPIRLQVQYRMHPALSSFPSNVFYEGSLQNGVTEGKHLSMKRKEVINLSHMC 709
Query: 504 WIT-QCPLLLLDTRLPYGS---LSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAG 558
+I+ + L+ +D + P + C +L+ +G SF N EA V + AG
Sbjct: 710 FISGERQLIGIDWQWPVPDKPMMFWSCYGQEELSSSGTSFLNRTEAANVEKLATRFLKAG 769
Query: 559 VSPSAIAVQSPYVAQVQHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIIS 609
+ P I + +PY Q R + + G +EVA +D+FQGRE D +I++
Sbjct: 770 LKPEQIGIITPYEGQ----RSYIVQFMQTQGALHSKLYLEMEVANVDAFQGREKDIIIVT 825
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
VRSN +GFL DSRR+NVA+TRA + +V ++ + + LL + G
Sbjct: 826 CVRSNDHQGIGFLNDSRRLNVALTRAKFGLIIVGNAKVLSRHPLWNYLLSMFKEKG 881
>gi|145499757|ref|XP_001435863.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402999|emb|CAK68466.1| unnamed protein product [Paramecium tetraurelia]
Length = 928
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 138/465 (29%), Positives = 215/465 (46%), Gaps = 81/465 (17%)
Query: 237 DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER------VLVTAPTNA 290
D+ KKA+ K PL +IQGPPGTGKT I+ + V+ E+ +LV AP+N
Sbjct: 374 DAVKKAL------KSPLSLIQGPPGTGKTVTSATIVHQLVKALEKQKQRGQILVCAPSNI 427
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK-D 349
VD + EK++ G+ +VR+ + R S S EF + +R D
Sbjct: 428 VVDQLAEKINKTGVKVVRLCSKTRES----------------VSTTIEFLTLHNQVRSLD 471
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEK-------ETVKEVLSSAQVVLATNTGAADP 402
+ Q + +L+ Q G+ +K E+ E KE++ A V+ T G+AD
Sbjct: 472 IPQYHQ----LQMFYELMDQQGELDQKDEQVFIRMRDEAEKEIIEQADVICTTCIGSADK 527
Query: 403 LIRRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGV 442
++ + F V + IL GD QL PV+ SR+A G+
Sbjct: 528 RLKDM-RFPFVLIDEATQAIEPECLLPMIKGAQHVILVGDHRQLGPVVQSREAASVGLDR 586
Query: 443 SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
SL ER L G+ +L QYRM+ + + S Y G+L + T++ F P
Sbjct: 587 SLFERLVQL--GIRPVRLQVQYRMHPELTVFPSNTFYEGTLQNGVTISDRTHSGN-FPWP 643
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPS 562
Q P++ ++ + +E L +GT S+ N EA V V+ L V +
Sbjct: 644 N--KQKPMIFINVQ---------GQEQLSASGT-SYLNTQEAVAVEQAVYYLYQNTVKLN 691
Query: 563 AIAVQSPYVAQVQHL---RERLDDLP--EAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
I + +PY Q ++ +R LP + +EVA++D FQGRE D +IIS VRSN
Sbjct: 692 KIGIITPYKGQRTYIISYLQRNGQLPYNQYRDIEVASVDGFQGREKDFIIISCVRSNDTQ 751
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+GFL + RR+NV ITRA + ++ ++ +C + +L H +
Sbjct: 752 GIGFLTNPRRLNVTITRARFGLIIIGNARVLCKDNLWNNMLNHFK 796
>gi|423226361|ref|ZP_17212827.1| hypothetical protein HMPREF1062_05013 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392629789|gb|EIY23795.1| hypothetical protein HMPREF1062_05013 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 627
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 236/507 (46%), Gaps = 78/507 (15%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTF-----------DDSQKKAIALGLNKKR 251
T+F DV + N LA+ ++ L G + F + +Q+ A+ LN R
Sbjct: 147 TMFEALSDVIRAKGNRLAELRDIML-GTLKPGFRELYPVRFPWLNSTQENAVNKVLNS-R 204
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+GN
Sbjct: 205 DVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVNVLRIGN 264
Query: 312 PARISPAVASKSL-----GEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
P R++ + S + G S+L S +RK +R+ + R+
Sbjct: 265 PTRVNDKMLSFTYERRFEGHPAYSELWS-----------IRKAMREMGGKHRGSYEERES 313
Query: 367 LKQLGKTLKKK----EKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL-------- 412
+ L+ + E + ++ +A V+ +T + ++ R T +
Sbjct: 314 ARNRMSRLRDRATQLEIQINADLFDNAHVIASTLVSSNHRILNGRHFGTLFIDEAAQALE 373
Query: 413 --------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
R +LAGD CQL P I +A GG+ +L+ER ++ L QY
Sbjct: 374 AACWIAIRKADRVVLAGDHCQLPPTIKCYEAARGGLECTLMERVVANKPSTVSL-LKVQY 432
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM++ I + S+ Y G L ++ + ++D W T P+ +DT +
Sbjct: 433 RMHEDIMKFPSQWFYNGELQAAPEIRYRGILD-------WDT--PINWIDTS------DM 477
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI------AVQSPYVAQVQHLR 578
+E + T N+ EA++++ + + I + + SPY AQVQ+LR
Sbjct: 478 DFKEEF-IGETFGRINKAEADLLLQELKAYIDRIGGKRMLEERIDFGIISPYKAQVQYLR 536
Query: 579 ERLDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
++ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITR
Sbjct: 537 NKIKASGSLKPYRSLLTVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAITR 596
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHI 661
A + ++ ++ T+ + F L+ +I
Sbjct: 597 ARMKLVILGEAETMKRHKFYKELIEYI 623
>gi|224536127|ref|ZP_03676666.1| hypothetical protein BACCELL_00992 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522261|gb|EEF91366.1| hypothetical protein BACCELL_00992 [Bacteroides cellulosilyticus
DSM 14838]
Length = 627
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 149/505 (29%), Positives = 234/505 (46%), Gaps = 74/505 (14%)
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTF-----------DDSQKKAIALGLNKKR 251
T+F DV + N LA+ ++ L G + F + +Q+ A+ LN R
Sbjct: 147 TMFEALSDVIRAKGNRLAELRDIML-GTLKPGFRELYPVRFPWLNSTQENAVNKVLNS-R 204
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311
+ I+ GPPGTGKT L E I + + +VLV A +N AVD + EKL D G+N++R+GN
Sbjct: 205 DVSIVHGPPGTGKTTTLVEAIYETLHREPQVLVCAQSNTAVDWICEKLVDRGVNVLRIGN 264
Query: 312 PARISPAVASKSL-----GEIVKSKLASF------VAEFERKKSDLRKDLRQCLKDDSLA 360
P R++ + S + G S+L S + R + R+ R + L
Sbjct: 265 PTRVNDKMLSFTYERRFEGHPAYSELWSIRKAMREIGGKHRGSYEERESARNRM--SRLR 322
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVL-ATNTG------AADPL-------IRR 406
QL Q+ L ++SS +L + G AA L IR+
Sbjct: 323 DRATQLEIQINADLFDNAHVIASTLVSSNHRILNGRHFGTLFIDEAAQALEAACWIAIRK 382
Query: 407 LDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
D R +LAGD CQL P I +A GG+ +L+ER ++ L QYRM
Sbjct: 383 AD-------RVVLAGDHCQLPPTIKCYEAARGGLECTLMERVVANKPSTVSL-LKVQYRM 434
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
++ I + S+ Y G L ++ + ++D W T P+ +DT +
Sbjct: 435 HEDIMKFPSQWFYNGELQAAPEIRYRGILD-------WDT--PINWIDTS------DMDF 479
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI------AVQSPYVAQVQHLRER 580
+E + T N+ EA++++ + I + + SPY AQVQ+LR +
Sbjct: 480 KEEF-IGETFGRINKAEADLLLQELKVYIDRIGGKRVLEERIDFGIISPYKAQVQYLRNK 538
Query: 581 LDD----LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
+ P + + V T+D FQG+E D + IS+VR+N G +GFL D RRMNVAITRA
Sbjct: 539 IKASGSLKPYRSLLTVNTVDGFQGQERDVIFISLVRANEDGQIGFLNDLRRMNVAITRAR 598
Query: 637 KHVAVVCDSSTICHNTFLARLLRHI 661
+ ++ ++ T+ + F L+ +I
Sbjct: 599 MKLVILGEAETMKRHKFYKELIEYI 623
>gi|303391232|ref|XP_003073846.1| putative DNA helicase [Encephalitozoon intestinalis ATCC 50506]
gi|303302994|gb|ADM12486.1| putative DNA helicase [Encephalitozoon intestinalis ATCC 50506]
Length = 779
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 135/449 (30%), Positives = 209/449 (46%), Gaps = 74/449 (16%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVD 293
+ SQ+ A+ L +K + +IQGPPGTGKT + I+ V+ G +VLV AP+N AVD
Sbjct: 339 LNASQEIAVRAALGRK--VTLIQGPPGTGKTLVSSAIVYNLVKHYGGKVLVVAPSNTAVD 396
Query: 294 NMVEKLSDVGLNIVRVGNPARI--SPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
+ K+ GL ++RV + R V SL E +K + RKK D
Sbjct: 397 QLTLKIHKTGLRVLRVMSRRRECGQSDVNFLSLHENLKE------LQEGRKKKD------ 444
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR----- 406
+C D + I + ++LKK +L+ A+V+ T + + +
Sbjct: 445 ECYGDHNRYNSIYN--DETNESLKK-------HLLNQAEVITCTCVTSGQKMFNKFRFHY 495
Query: 407 ------------LDTFDLVG--KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
L LV K+ +L GD QL P IL +K + G SL ER ++
Sbjct: 496 VLIDEAVQSTEPLSLIPLVYGCKKLVLVGDHKQLGPTILCKKVAQAGFKQSLFERLISI- 554
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
GV+ L+ QYRM+ + W S+ Y G L++ + P + C
Sbjct: 555 -GVVPYVLSVQYRMDADLCEWPSEMFYNGELLTGGKNFCRFDLGIP---TNFFYVC---- 606
Query: 513 LDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEA---EIVVHHVFSLICAGVSPSAIAVQSP 569
YG E + +GT SF N+ EA E ++ H+F GV+ + I V +P
Sbjct: 607 ------YG------REEVSPSGT-SFVNQAEALHCESIIRHLFK---CGVTENQIGVITP 650
Query: 570 YVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMN 629
Y Q ++ R+ E +E++ +D FQGRE D +I+S+VRSN +GF+GD RRMN
Sbjct: 651 YEGQRSYILNRIFG-AEPGNLEISNVDGFQGREKDFIIVSLVRSNLYQGIGFVGDKRRMN 709
Query: 630 VAITRACKHVAVVCDSSTICHNTFLARLL 658
V +TRA + ++ + T+ + + LL
Sbjct: 710 VMLTRAKHGLVIIGNPMTLMRHDMWSNLL 738
>gi|402594446|gb|EJW88372.1| hypothetical protein WUBG_00717 [Wuchereria bancrofti]
Length = 1089
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 146/467 (31%), Positives = 218/467 (46%), Gaps = 81/467 (17%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ V+Q +VLV AP+N AVD
Sbjct: 435 LNHSQVHAVKTVL--QRPLSLIQGPPGTGKTVTSATIVYHLVKQTNGQVLVCAPSNIAVD 492
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R E + S +A F+A L LR
Sbjct: 493 QLAEKIHRTGLKVVRLCAKSR-----------ETLDSPVA-FLA--------LHNQLR-A 531
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKE-----TVKE--VLSSAQVVLATNTGAADPLIRR 406
L + ++QL +++G+ E+ KE +L++A V+ T AAD +
Sbjct: 532 LHGAAELHKLQQLKEEMGELADADERRFRALRIAKECQLLAAADVICCTCVSAADSRLSH 591
Query: 407 L--------------DTFDLVGKRC-----ILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+ + +V C +L GD CQL PVI+ +KA + G+ SL ER
Sbjct: 592 MRIKCVLIDESTQATEPEVMVAVVCGVRQLVLVGDHCQLGPVIMCKKAAKAGLSQSLFER 651
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
L G +L QYRM+ A++S+ S Y GSL + L+ + P +
Sbjct: 652 LVLL--GNRPIRLQVQYRMHPALSSFPSNVFYEGSLQN----GERQLIGIDWQWP--VPD 703
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P++ YG +E L +GT SF N EA V + AG+ P I +
Sbjct: 704 KPMMFWSC---YG------QEELSSSGT-SFLNRTEAANVEKLATRFLKAGIKPEQIGII 753
Query: 568 SPYVAQVQHLRERLDDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGA 618
+PY Q R + + G +EVA +D+FQGRE D +I++ VRSN
Sbjct: 754 TPYEGQ----RSYIVQFMQTQGALHSKLYLEMEVANVDAFQGREKDIIIVTCVRSNDHQG 809
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+GFL DSRR+NVA+TRA + +V ++ + + LL + G
Sbjct: 810 IGFLNDSRRLNVALTRAKFGLIIVGNAKVLSRHPLWNYLLSMFKEKG 856
>gi|340053654|emb|CCC47947.1| putative nonsense mRNA reducing factor 1 [Trypanosoma vivax Y486]
Length = 861
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 157/518 (30%), Positives = 243/518 (46%), Gaps = 73/518 (14%)
Query: 177 ERNCEALMLLQKNGLHKRNPSIAAVV--TLFG--DKEDVTWLEENDLADWSEVKLDGIMG 232
+R EAL + +R+ S++A + T+ G DK + + E ++++L
Sbjct: 345 KRKVEAL-----STFSRRSTSLSAYLYFTILGHVDKAEERYSE-------TDIELPAKRL 392
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAA 291
++SQ++A+ L K+PL +IQGPPGTGKT I+++ ++ + ++LV AP+N A
Sbjct: 393 SNLNNSQEQAVRTAL--KKPLTLIQGPPGTGKTSTSVAIVSQLYERVKTQILVCAPSNVA 450
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
VD++ E+L GLN+VR+ R +VA + LG + +++ F+ + S + L+
Sbjct: 451 VDHLAERLEAAGLNVVRLQPRCRDVISVAVERLG--LDNQVEDFI-----ETSTGHETLK 503
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
+ L L + + KK + + +L+ A VV T GA D +R + F
Sbjct: 504 RIL---GLIRSGENISDEDYNAYKKGTMKIEELILNKADVVCCTCIGAGDSRLREM-RFK 559
Query: 412 LV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
V K+ L GD CQL PV+ S A G SL ER L
Sbjct: 560 YVLIDEATQGTEPETLIPLVRGAKQVFLVGDHCQLRPVVFSIAAERTGFRRSLFERL--L 617
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G +L QYRM+ ++ + S Y G+L + T D V P P
Sbjct: 618 MMGHRPLRLDVQYRMHPCLSLFISHHFYEGTLQNGVTEGQR---DALQVFPWPDGTRPFF 674
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFY-NEGEAEIVVHHVFSLIC-AGVSPSAIAVQSP 569
+ S G EE L GS Y N EA + V LI GVSP I V +P
Sbjct: 675 FYN--------STGPEE---LGANGSSYLNRTEAALAEQVVTKLIRDGGVSPDGIGVITP 723
Query: 570 YVAQVQHLRERLDD---LPEAAG--VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
Y +Q + LR L LP + VEV+++D+FQGRE + +I S VRSN +GF D
Sbjct: 724 YRSQCRFLRNYLSRCGFLPASTYDRVEVSSVDAFQGREKEFIIFSCVRSNHRQGIGFAVD 783
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NV++TRA + + ++ + LL H++
Sbjct: 784 GRRLNVSLTRAKRGLIIMGNVQLFSRYPNWNELLVHMK 821
>gi|407400115|gb|EKF28555.1| regulator of nonsense transcripts 1, putative,nonsense mRNA
reducing factor 1, putative [Trypanosoma cruzi
marinkellei]
Length = 839
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 153/469 (32%), Positives = 223/469 (47%), Gaps = 83/469 (17%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT----GLLKEIIARAVQQGERVLVTAPTN 289
+ SQ A+ L + PL +IQGPPGTGKT +++E+ R Q +LV AP+N
Sbjct: 382 NLNSSQDAAVRTAL--RNPLTLIQGPPGTGKTSTSVAIVRELHRRTHSQ---ILVCAPSN 436
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD 349
AVD + E++S GL VR+ R + K LG + S++ F+A S+ +
Sbjct: 437 VAVDQLAERISATGLKTVRLQAHYREVVPSSVKHLG--LDSQVEEFIA-----SSNGNRT 489
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEV----LSSAQVVLATNTGAADPLIR 405
L+Q L D AG K LG+ K + V+++ L A V+ T GAAD R
Sbjct: 490 LKQLL--DMRLAG-----KALGEQDIKVYNDGVRDIEEMLLGGADVICCTCIGAAD---R 539
Query: 406 RLDT--FDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVS 443
RL F V K+ L GD CQL P++ S G+ S
Sbjct: 540 RLGKMRFQYVLIDEATQGTEPETLVPLVRGAKQVFLLGDHCQLRPIVFSLPVERAGLRRS 599
Query: 444 LLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTV----ASHLLVDTPF 499
L ER L G A +L QYRM+ A++ + S + Y G+L + T AS + P+
Sbjct: 600 LFER--LLLTGHRAVRLDVQYRMHPALSLFPSDQFYEGTLQNGLTEEQRDASQVF---PW 654
Query: 500 VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFY-NEGEAEIVVHHVFSLICAG 558
PT P+ +T G EE ++ GS Y N EA + + LI G
Sbjct: 655 PDPTR----PIFFYNT--------TGSEE---VSANGSSYLNRAEAALTERIITKLIQDG 699
Query: 559 -VSPSAIAVQSPYVAQVQHLRE---RLDDLPEAA--GVEVATIDSFQGREADAVIISMVR 612
V P I V +PY Q ++L R LP+ A VEV+++D+FQGRE + +I+S VR
Sbjct: 700 KVKPDDIGVITPYGGQCRYLMNYLLRCGPLPKTAYESVEVSSVDAFQGREKEFIILSCVR 759
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
SN +GF+ D RR+NV+ITRA + + ++ + + LL H+
Sbjct: 760 SNHRQGIGFVVDWRRLNVSITRAKRGLIIMGNVQLLSRYPVWHALLAHL 808
>gi|308485038|ref|XP_003104718.1| hypothetical protein CRE_23956 [Caenorhabditis remanei]
gi|308257416|gb|EFP01369.1| hypothetical protein CRE_23956 [Caenorhabditis remanei]
Length = 717
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 135/468 (28%), Positives = 225/468 (48%), Gaps = 71/468 (15%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ +T + SQ+ A++ LN +R LL IQGPPGTGKT ++ EI+ +++ ++VLV APT+
Sbjct: 258 LPETLNSSQQAAVSAALNTQRNLLCIQGPPGTGKTRVIAEIVHHLLKKKKKVLVCAPTHV 317
Query: 291 AVDN-MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER-----KKS 344
AV N M + + L I PA I A L S EF++ K
Sbjct: 318 AVRNAMQATMKRMLLEI-----PANIVEAQVCT---------LNSLRDEFQQHQFFPKLL 363
Query: 345 DLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI 404
+ L + K+DS + + L ++ V+ + S Q + +T ++ I
Sbjct: 364 AANERLAKTNKNDSEYKKVSREYYYLWLSI-------VRSIYSPRQAIYSTLGTSS---I 413
Query: 405 RRLDTFDLVG--------------------------KRCILAGDQCQLAPVILSRKALEG 438
++L+ + K+ IL GDQ QL V+ S KA++
Sbjct: 414 QKLNEYGWKADVMIVDEAAQCTEPATWVPVLTTPSCKKLILVGDQKQLPAVVFSEKAMQE 473
Query: 439 GIGVSLLER-AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT 497
+ VSL+E+ ++ + L QYRMN+ I +W ++ Y L + S+VA L D
Sbjct: 474 NMKVSLMEKLSSEFASNNINILLNEQYRMNEKIMNWPNEIFYDNKLTAHSSVADITLRDI 533
Query: 498 -PFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
P + ++ P+L++D C E S+ N GE ++ +V L+
Sbjct: 534 CPDIPEGFVLNNPILMIDMEKFENKSQEECLEPF------SYSNTGEINVIKDYVIRLVT 587
Query: 557 -AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
GV P IAV +PY AQ++ LR + V++ T+D+FQG E + +I +VR N
Sbjct: 588 DVGVDPKDIAVIAPYYAQIERLRSEI-----PFRVDINTVDAFQGHEREVIIFCLVRDND 642
Query: 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTIC-HNTFLARLLRHIR 662
G++GFL ++RR+NVA+TRA + ++ S + N L +L ++++
Sbjct: 643 DGSIGFLRETRRLNVAVTRAKRQFVLIGSSRMMMRRNKDLRKLYKYLK 690
>gi|145353588|ref|XP_001421091.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581327|gb|ABO99384.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 466
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 147/484 (30%), Positives = 215/484 (44%), Gaps = 93/484 (19%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---------QGERVL 283
+ + SQ+ A+ L+ L + QGPPGTGKT L I AV +G VL
Sbjct: 8 EPLNPSQRVAVKSALSSS--LAVWQGPPGTGKTRTLIAYIGAAVHLASIQKRRGRGPIVL 65
Query: 284 VTAPTNAAVDNMVEKLSDVG-------LNIVRVGNPARISPAVASKSL-GEIVKSKLASF 335
+A +N AVDN++E L+ L +VRVG PA++ P + +L +I L
Sbjct: 66 ASAASNVAVDNILEGLAKESFIVDGRPLRVVRVGAPAKVQPWLQQLTLDAQIALHPLGRQ 125
Query: 336 VAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT 395
A +R+ ++ S A RQ K + E K +L S VV T
Sbjct: 126 AAA-----------MREAIRGQSGPAFARQR-----KQATQLELTAAKSILKSVDVVCTT 169
Query: 396 NTGAADPLIRRLDTFDLV----GKRC---------------ILAGDQCQLAPVILSRKAL 436
GA D L+ TF + +C +L GD QL P ++SR A+
Sbjct: 170 CVGAGDELLEDF-TFPVAVVDEATQCTEPGALISLTKALSAVLVGDSKQLPPTVVSRDAV 228
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ G+ VS+ ER L GV + L QYRM+ IA + S Y G + S T LV
Sbjct: 229 DAGLQVSIFERMERL--GVKVSLLDMQYRMHPQIAEFPSLAFYKGKVGSVPTPQDRPLV- 285
Query: 497 TPFVKPTWIT-QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI 555
P + W + P+ ++ P G S YN GEA++ + V L+
Sbjct: 286 -PGI--AWPSPNVPVAFVEISAPESRAPDG----------NSLYNVGEAKMAIGVVRKLL 332
Query: 556 CAG--VSPSAIAVQSPYVAQVQHLRERL----------------DDLPEAAGVEVATIDS 597
AG P I V SPY AQV+ L+E D + E +E+ ++D
Sbjct: 333 AAGDLAGPGDIGVISPYAAQVRRLQEEYGVGGSPKRNYLDYTEEDKIEE---LEIRSVDG 389
Query: 598 FQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARL 657
FQGRE + +++ VRSN G +GF+ D RR+NV ITRA + + V+ + T+ +N
Sbjct: 390 FQGREKEVIVLCTVRSNPSGDIGFVADPRRLNVGITRAKRGLIVLGNRKTLSNNEMWRSW 449
Query: 658 LRHI 661
+ I
Sbjct: 450 FKWI 453
>gi|449303317|gb|EMC99325.1| hypothetical protein BAUCODRAFT_399389 [Baudoinia compniacensis
UAMH 10762]
Length = 1096
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 140/456 (30%), Positives = 209/456 (45%), Gaps = 78/456 (17%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L K PL +IQGPPGTGKT +I + G +VLV AP+N AVD
Sbjct: 452 LNGSQINAVKSVLTK--PLSLIQGPPGTGKTVTSATVIYHLSKINGGQVLVCAPSNVAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ E++ GL VRV +R E V S ++ + + +D +L
Sbjct: 510 QLCERIHKTGLKCVRVTAKSR-----------EDVDSPVSFLSLHRQVQMNDTNVELN-- 556
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD----- 408
K L A + +L Q K K + +E+LS+A V+ T GA DP + +
Sbjct: 557 -KLQQLKAELGELSSQDEKKFKTLTRAAEREILSNADVICCTCVGAGDPRLAKFKFRTVL 615
Query: 409 --------------TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
L K+ +L GD QL PVI++ +L G
Sbjct: 616 IDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMN-----------IL--------G 656
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLD 514
+L QYRM+ ++ + S Y GSL + T+ LL + F P + P++
Sbjct: 657 CAPIRLQVQYRMHPCLSEFPSNMFYEGSLQNGITMQERLLRNVDFPWP--VADAPMMFWS 714
Query: 515 TRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ- 573
+LG EE + +GT S+ N EA V V AGV P +I + +PY Q
Sbjct: 715 --------NLGNEE-ISASGT-SYLNRTEASNVEKIVTRFFKAGVKPESIGIITPYEGQR 764
Query: 574 ---VQHLRE----RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
VQ +++ R + E VEVA++D+FQGRE D +++S VRSN +GFL D R
Sbjct: 765 SYVVQSMQQTGTFRKEIYKE---VEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPR 821
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
R+NVA+TRA + ++ + + + LL H +
Sbjct: 822 RLNVALTRAKYGLVILGNPKVLAKHPLWHYLLLHFK 857
>gi|414590338|tpg|DAA40909.1| TPA: hypothetical protein ZEAMMB73_069756 [Zea mays]
Length = 889
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 138/402 (34%), Positives = 197/402 (49%), Gaps = 75/402 (18%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 520 QKPVSLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVR 579
Query: 309 VGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQL 366
+ +R +S V +L V+ S +KS+L K L+Q LKD+ +L
Sbjct: 580 LCAKSREAVSSPVEHLTLHYQVRHLDTS-------EKSELHK-LQQ-LKDEQ-----GEL 625
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD--------------- 411
K K ++ T +E+L SA V+ T GA DP RL F
Sbjct: 626 SSSDEKKYKALKRATEREILQSADVICCTCVGAGDP---RLSNFRFRQVLIDESTQATEP 682
Query: 412 -------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
L K+ +L GD CQL PVI+ +KA G+ SL ER L GV +L QY
Sbjct: 683 ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVIL--GVKPFRLQVQY 740
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCPLLLLDTRLPYGSL 522
RM+ ++ + S Y G+L + TV +D P+ P R + +
Sbjct: 741 RMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVP------------NRPMFFYV 788
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH------ 576
+G EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 789 QMGQEE-ISASGT-SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMA 846
Query: 577 ----LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
LR++L +EVA++DSFQGRE D +I+S VRSN
Sbjct: 847 RNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSN 883
>gi|399218547|emb|CCF75434.1| unnamed protein product [Babesia microti strain RI]
Length = 889
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 201/439 (45%), Gaps = 48/439 (10%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295
D QK+AI + K + I GPPGTGKT L E+I + V GE VLV+ P+N AVD +
Sbjct: 180 DKYQKEAIEHAI-KSKDFACIWGPPGTGKTTTLSELIHQLVISGETVLVSCPSNFAVDLI 238
Query: 296 VEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
K +G++ VRVG A I + E L +F E L
Sbjct: 239 YSKTVSIGVSCVRVGRGAVIKELQLKMATIE----SLKNFYTE---------NSYSTILN 285
Query: 356 DDSLAAGIR-QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVG 414
+ + R QLLK+ + KE+ + +T D L++ +G
Sbjct: 286 TNQGSYSKRMQLLKKARAIFTTCLGTSSKEIQNFINKYRKFDTLIIDESGNSLESTCYIG 345
Query: 415 -----KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
KR + AGD QL P++ SR S+LER L QYRMN
Sbjct: 346 MLTGVKRVVFAGDHFQLPPIVKSRIKTS-----SILERLYLSCPNSFVM-LKRQYRMNQQ 399
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
I W++ + Y L S S+V + +L + ++D P + E
Sbjct: 400 IVKWSNNQFYSNKLESDSSVKNSVLNER--------------MVDFYPPLIWYEIEGMEE 445
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLI--CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
D +GS +N+ EA V+ +V +I AG+ P I V +PY AQ + L+E +
Sbjct: 446 FD---SGSIFNKLEASYVLDYV-KIISSTAGIHPECITVITPYRAQARLLQELIG--VTT 499
Query: 588 AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSST 647
+ +++ID+ QG E+D VI S+V N+ G +GFL D RRMNVAITR +HVAV ++T
Sbjct: 500 HNLRISSIDASQGFESDVVIFSLVSCNSEGNIGFLSDYRRMNVAITRGKRHVAVFGSANT 559
Query: 648 ICHNTFLARLLRHIRYFGR 666
N + L + FGR
Sbjct: 560 FQRNHSPYKDLLKVVKFGR 578
>gi|320168749|gb|EFW45648.1| RENT1 [Capsaspora owczarzaki ATCC 30864]
Length = 1120
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 169/617 (27%), Positives = 263/617 (42%), Gaps = 113/617 (18%)
Query: 88 HLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCT---ISVA 144
H VL R +G++R T+ GD + +R G G H L G T I++
Sbjct: 375 HFVLPRQDGDYR----TVH-GDELRLRYAGELG----RPWAGEGHVLVLPGSTTEGITLE 425
Query: 145 LESRHGDPTF------SKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSI 198
L S +G PT KS DR+Q T + C + + K
Sbjct: 426 LWSSNGVPTHLTHNFHVDFVWKSTTFDRMQAALKTFAVDEKCVSSYIFHK---------- 475
Query: 199 AAVVTLFGDKEDVTWLEENDLADWSEV----KLDGIMGKTFDDSQKKAIALGLNKKRPLL 254
L G +E +L D V L+ ++SQ AI L + P
Sbjct: 476 -----LLG--------KEVELKDEHRVSVPENLNAPNLPKLNESQMSAITRVL--REPFS 520
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
+IQGPPGTGKT ++ + G+ VLV AP+N AVD + E++ GL +VR+ +R
Sbjct: 521 LIQGPPGTGKTVTSATLVYHLSKFGQ-VLVCAPSNIAVDQLTERIHRTGLKVVRLAAKSR 579
Query: 315 ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTL 374
E ++S ++ + + S +L + ++ G+ + ++ + L
Sbjct: 580 -----------EAIESSVSFLALHSQIRNSAAHPELAKLMQLREEQNGLDDVDERRFRQL 628
Query: 375 KKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--------------------G 414
K + ++ L +A V+ T GA DP + R+ F V
Sbjct: 629 KFAAE---RDFLKNADVICTTCVGAGDPRLARM-RFRAVLVDEATQATEPEAIIPIVMGA 684
Query: 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWA 474
K+ +L GD CQL PV++ +KA + SL ER + +L QYRM+ ++++
Sbjct: 685 KQVVLVGDHCQLGPVVMCKKAAKANFTQSLFERLVMGQNRPI--RLEIQYRMHPCLSAFP 742
Query: 475 SKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG 534
S Y GSL + A F P P+ +LG EE L +G
Sbjct: 743 SDTFYEGSLQNGVLAADRTPKTPAFTWPD--PNNPMFFWS--------NLGQEE-LSASG 791
Query: 535 TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGV---- 590
T S+ N EA V V L+ +G P I V +PY Q + + + A GV
Sbjct: 792 T-SYLNRAEASSVEKLVTQLLKSGTKPDQIGVITPYEGQRAFILQTM----TANGVLRSQ 846
Query: 591 -----EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
EVA++D+FQGRE D +I+S VRS +GFL D RR+NVA+TRA + V+ ++
Sbjct: 847 LYQQIEVASVDAFQGREKDYIILSCVRS---AGIGFLNDPRRLNVALTRARYGLVVIGNA 903
Query: 646 STICHNTFLARLLRHIR 662
+ + ++ + R
Sbjct: 904 HRLARDPLWNEVITYFR 920
>gi|429961769|gb|ELA41314.1| hypothetical protein VICG_01687 [Vittaforma corneae ATCC 50505]
Length = 575
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 205/447 (45%), Gaps = 87/447 (19%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAA 291
K F +Q + IA+ R L +IQGPPGTGKT + I+ V+ G++VLV AP+N A
Sbjct: 161 KFFALNQSQEIAVKAALTRTLTLIQGPPGTGKTMVSAVIVYNLVKHYGKKVLVVAPSNTA 220
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
D + K++D GL ++R+ +++ D+ D+
Sbjct: 221 ADQLAIKINDTGLKVLRI-----------------------------MSKRREDVSTDV- 250
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD-TF 410
D L L K L + + + + +L A+VV T A +++ + F
Sbjct: 251 -----DFLC-----LHKLLNEFFIDSKNASQRNLLEMAEVVCCTCVTAGQKILKEFEFPF 300
Query: 411 DLVGK------------------RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
L+ + + IL GD QL P IL++ ++ G SL ER L
Sbjct: 301 VLIDEAVQSTEPLSLVPCVYSPEKLILVGDHKQLGPTILNKDVVKYGFKQSLFERL--LR 358
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLL 512
GV+ L+ QYRM+ + ++ S+ Y G L+ S T S +L D P
Sbjct: 359 IGVMPYLLSVQYRMHPDLCAFPSEYFYNG-LLKSGTSTSKVL-DLP-------------- 402
Query: 513 LDTRLPYGSLSLGCEEHLDLAGT-GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+ C+ +++ + SF+N+ EA IV + + L GV I V +PY
Sbjct: 403 -------NNFFYVCDGKEEISQSRTSFFNKSEAVIVENIIRFLFKNGVLEQQIGVITPYE 455
Query: 572 AQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
Q ++ ++ EA +E+ +D FQGRE D +I+S+VRSN VGF+GD RRMNV
Sbjct: 456 GQRSYILGQIFG-NEAGNLEIKNVDGFQGREKDFIIVSLVRSNIFQGVGFVGDKRRMNVT 514
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLL 658
+TRA + ++ + T+ N A LL
Sbjct: 515 LTRAKHGLIIIGNPFTLYKNEMWADLL 541
>gi|58261218|ref|XP_568019.1| DNA helicase [Cryptococcus neoformans var. neoformans JEC21]
gi|57230101|gb|AAW46502.1| DNA helicase, putative [Cryptococcus neoformans var. neoformans
JEC21]
Length = 952
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 144/492 (29%), Positives = 232/492 (47%), Gaps = 72/492 (14%)
Query: 212 TWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEI 271
+W E + + V+++G + +Q +A+ + L++ L ++QGPPGTGKT ++ E
Sbjct: 436 SWAERHRSERETPVEVEGDPYVPLNRTQLRAMGMMLSEA--LSLVQGPPGTGKTRVIVET 493
Query: 272 IA---RAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 328
I Q +LV A TN AVDN++ + G+ +R G R+ + +LG +
Sbjct: 494 IKLLKHHFQIPHPILVCAHTNVAVDNLLAGMVKHGVKAIRTGMAERVPTDLKQYTLGIKM 553
Query: 329 KSK-LASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLS 387
+S + + V K L+ ++ + + LK++ + + ++ +E+L
Sbjct: 554 ESHPMWTCVQTMTEKTKRLKDEIFRLDFGNPERQQKSSELKKIWRQIWGIQQSITRELLL 613
Query: 388 SAQVV-------LATNTGAADPLIRRLDTFDLVGKRCIL------------AGDQCQLAP 428
A VV ++ N + D I LD + + L GD QL P
Sbjct: 614 DADVVCTTCISAISANLNSIDFPIVFLDEASMATEPLTLLPLMKGSSHVAIIGDHKQLPP 673
Query: 429 VILSRKALEGGIGVSLLERAATLHE-GVLATKLTTQYRMNDAIASWASKEMYGGSLISSS 487
VI+S+ A GG+ SL ER +HE V + L TQYRM+ ++A+++SK Y SL+ +
Sbjct: 674 VIVSQDAHAGGLSTSLFER--LIHEKNVPSIMLDTQYRMHPSLAAFSSKTFYS-SLLKNG 730
Query: 488 TVASH--------LLVDTPFVKPT------WITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
T AS L+ + P P+ W + L L+ HL+
Sbjct: 731 TPASERPPPETAFLIPEDPIPDPSTGELRLWGEKTNLTFLN------------HSHLESP 778
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAG--VSPSAIAVQSPYVAQVQHLRERL------DDLP 585
S NEGEAEI+V V L+ + S I + +PY+ Q++ L E L D L
Sbjct: 779 VLQSMANEGEAEIIVDVVTDLLHKNPDLKGSQIGIIAPYLGQIKVLSETLFASETQDSLK 838
Query: 586 EAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
G VE+ T+D F+GRE + +I S VRSN G +GFLGD RR+NV +TRA
Sbjct: 839 RILGDERTEEIQDVEIKTVDGFEGREKEVIIFSTVRSNAGGYIGFLGDWRRVNVGLTRAR 898
Query: 637 KHVAVVCDSSTI 648
+ + +V + T+
Sbjct: 899 RALIMVGNKETL 910
>gi|134115759|ref|XP_773593.1| hypothetical protein CNBI2070 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256219|gb|EAL18946.1| hypothetical protein CNBI2070 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 952
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 143/487 (29%), Positives = 232/487 (47%), Gaps = 62/487 (12%)
Query: 212 TWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEI 271
+W E + + V+++G + +Q +A+ + L++ L ++QGPPGTGKT ++ E
Sbjct: 436 SWAERHRSERETPVEVEGDPYVPLNRTQLRAMGMMLSEA--LSLVQGPPGTGKTRVIVET 493
Query: 272 IA---RAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV 328
I Q +LV A TN AVDN++ + G+ +R G R+ + +LG +
Sbjct: 494 IKLLKHHFQIPHPILVCAHTNVAVDNLLAGMVKHGVKAIRTGMAERVPTDLKQYTLGIKM 553
Query: 329 KSK-LASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLS 387
+S + + V K L+ ++ + + LK++ + + ++ +E+L
Sbjct: 554 ESHPMWTCVQTMTEKTKRLKDEIFRLDFGNPERQQKSSELKKIWRQIWGIQQSITRELLL 613
Query: 388 SAQVV-------LATNTGAADPLIRRLDTFDLVGKRCIL------------AGDQCQLAP 428
A VV ++ N + D I LD + + L GD QL P
Sbjct: 614 DADVVCTTCISAISANLNSIDFPIVFLDEASMATEPLTLLPLMKGSSHVAIIGDHKQLPP 673
Query: 429 VILSRKALEGGIGVSLLERAATLHE-GVLATKLTTQYRMNDAIASWASKEMYGGSLISSS 487
VI+S+ A GG+ SL ER +HE V + L TQYRM+ ++A+++SK Y L + +
Sbjct: 674 VIVSQDAHAGGLSTSLFER--LIHEKNVPSIMLDTQYRMHPSLAAFSSKTFYSSLLKNGT 731
Query: 488 TVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE---------HLDLAGTGSF 538
+ +T F+ P + P+ T G L L E+ HL+ S
Sbjct: 732 PASERPPPETAFLIP----EDPIPDPST----GELRLSGEKTNLTFLNHSHLESPVLQSM 783
Query: 539 YNEGEAEIVVHHVFSLICAG--VSPSAIAVQSPYVAQVQHLRERL------DDLPEAAG- 589
NEGEAEI+V V L+ + S I + +PY+ Q++ L E L D L G
Sbjct: 784 ANEGEAEIIVDVVTDLLHKNPDLKGSQIGIIAPYLGQIKVLSETLFASETQDSLKRILGD 843
Query: 590 --------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAV 641
VE+ T+D F+GRE + +I S VRSN G +GFLGD RR+NV +TRA + + +
Sbjct: 844 ERTEEIQDVEIKTVDGFEGREKEVIIFSTVRSNAGGYIGFLGDWRRVNVGLTRARRALIM 903
Query: 642 VCDSSTI 648
V + T+
Sbjct: 904 VGNKETL 910
>gi|402470074|gb|EJW04529.1| hypothetical protein EDEG_01257 [Edhazardia aedis USNM 41457]
Length = 534
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 135/484 (27%), Positives = 225/484 (46%), Gaps = 75/484 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ+ A+ L+ + L +IQGPPGTGKT ++ V+Q + +VLV + +N A+D
Sbjct: 57 LNSSQQIAVKAALHNQ--LTLIQGPPGTGKTVTCAAVVYNLVKQFKGKVLVVSNSNTAID 114
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
++ K+ L ++R+ + R + S L + A + + E+K+ ++ +
Sbjct: 115 HLAVKIHHSALKVIRIVSKRREN---CSDELEFLSLHMQAKILLKEEKKRGKTKRSTKNT 171
Query: 354 --LKDDSLAAGIRQLLKQLGKTLKKKEKET----------------VKEVLSSAQVVLAT 395
L +DS + +K+ +T ++++L +A V+ T
Sbjct: 172 AELSEDSNTENQYSVKDTFNANKDRKKSKTAHLESNSDDDALKYKMMRKILDNADVICCT 231
Query: 396 NTGAADPLIRRLDT-FDLVG------------------KRCILAGDQCQLAPVILSRKAL 436
+ ++++ D + L+ ++ IL GD QL P+IL +KA
Sbjct: 232 CVTSGQKILKKYDIPYVLIDEAVQCTEPLSIIPLAYGCRKLILVGDHKQLGPIILDKKAA 291
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL---ISSSTVASHL 493
+ G+ +L ER L G L L QYRM+ +A W S Y GSL IS S +
Sbjct: 292 KAGLKETLFERLIKL--GNLPFLLNMQYRMHPKLAEWPSNTFYEGSLKNGISESKRLNRT 349
Query: 494 LVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFS 553
++ PF PT+ C YG E L +GT S+ N+ EA + + S
Sbjct: 350 VL--PF--PTFFYVC----------YGL------EELSASGT-SYLNQTEALVTEEIIKS 388
Query: 554 LICAGVSPSAIAVQSPYVAQVQHLRERLDDLP-EAAGVEVATIDSFQGREADAVIISMVR 612
L+ +G+S I V +PY Q + RL + +E+ +D++QGRE D +IIS+VR
Sbjct: 389 LVKSGISEKQIGVITPYEGQRVFILNRLTKTSLKLENLEIKNVDAYQGREKDYIIISLVR 448
Query: 613 SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL-----RHIRYFGRV 667
SN +GFL D RR+NV +TRA ++ + +T+ N A + R + Y G V
Sbjct: 449 SNQKQGIGFLNDERRLNVTLTRAKYGCCIIGNPNTLYKNKMWANFINFYQDRDMIYKGSV 508
Query: 668 KHAE 671
+ E
Sbjct: 509 ECLE 512
>gi|308810613|ref|XP_003082615.1| tRNA-splicing endonuclease positive effector (SEN1) (ISS)
[Ostreococcus tauri]
gi|116061084|emb|CAL56472.1| tRNA-splicing endonuclease positive effector (SEN1) (ISS)
[Ostreococcus tauri]
Length = 545
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 143/470 (30%), Positives = 214/470 (45%), Gaps = 95/470 (20%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQ---------QGERVLVTAPTNAAVDNMVEKLSDVG 303
L + QGPPGTGKT L I AV +G VL +A +N AVDN++E L+
Sbjct: 102 LAVWQGPPGTGKTRTLIAYIGAAVHLASIQRRRGKGPVVLASAASNVAVDNILEGLAKEK 161
Query: 304 -------LNIVRVGNPARISPAVASKSL-GEIVKSKLASFVAEFERKKSDLRKDLRQCLK 355
L +VR+G PA++ P + +L +I + L A +R ++
Sbjct: 162 FVIDGRPLRVVRLGAPAKVQPWLQELTLDAQIAQHPLGRQAAA-----------MRDAIR 210
Query: 356 DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-- 413
S A RQ K + E K +L S VV +T GA D L+ L TF +
Sbjct: 211 GLSGPAYARQR-----KQATQLELTAAKSILKSVDVVCSTCVGAGDDLLEDL-TFPVTVL 264
Query: 414 --GKRC---------------ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVL 456
+C +L GD QL P ++SR A++ G+ +S+ ER L GV
Sbjct: 265 DEATQCTEPAALIALSKALSAVLVGDSRQLPPTVVSRDAVDAGLQISIFERMERL--GVK 322
Query: 457 ATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV-DTPFVKPTWITQCPLLLLDT 515
+ L QYRM+ IA + S+ Y G + S+ T +V + KP P++ L+
Sbjct: 323 VSLLDLQYRMHPLIAEFPSQAFYSGKVGSAPTPQDRPIVPGVAWPKPN----VPVVFLEI 378
Query: 516 -----RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG--VSPSAIAVQS 568
R P G+ S YN EA+ + V ++ +G P I V S
Sbjct: 379 NDAECRAPDGN---------------SLYNVEEAKTAITVVKKILASGDLAGPGDIGVIS 423
Query: 569 PYVAQVQHLRER-----------LD--DLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
PY AQV+ L+E LD D + +E+ ++D FQGRE + +++ VRSNT
Sbjct: 424 PYAAQVRLLQEEYGVLGTAKRNYLDYTDEDKMKELEIRSVDGFQGREKEVIVLCTVRSNT 483
Query: 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
G +GF+ D RR+NV ITRA + + V+ + T+ N + + I +G
Sbjct: 484 GGGIGFVDDPRRLNVGITRARRGLIVLGNRRTLSTNEIWRKWFKWIDQYG 533
>gi|300708470|ref|XP_002996413.1| hypothetical protein NCER_100487 [Nosema ceranae BRL01]
gi|239605714|gb|EEQ82742.1| hypothetical protein NCER_100487 [Nosema ceranae BRL01]
Length = 683
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 123/421 (29%), Positives = 193/421 (45%), Gaps = 82/421 (19%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
R + +IQGPPGTGKT + I+ +++ + +VLV AP+N AVD + K+ GL ++RV
Sbjct: 303 RKVTLIQGPPGTGKTLVSAAIVYNYIKKFKGKVLVVAPSNTAVDQLTLKVHKTGLKVIRV 362
Query: 310 GNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+ R E +SD+ SL ++ L
Sbjct: 363 MSRRR-------------------------EYTQSDVN--------FLSLHENVKDLQTM 389
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRR-----------------LDTFDL 412
+ ++ E+ K +L+ A V+ T A + + L+ L
Sbjct: 390 CNMSDEEDEENIKKRLLNQADVITCTCVTAGQKMFNKMKFSCVLVDEAVQSTEPLNIIPL 449
Query: 413 VG--KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
V + IL GD QL P IL +K + G SL ER L G+ L+ QYRM+ +
Sbjct: 450 VYGCTKLILVGDHKQLGPTILCKKVAKAGFKQSLFERLILL--GISPYILSLQYRMHADL 507
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
W S+ Y G L + + + L + P + C YG +E +
Sbjct: 508 CEWPSETFYNGELQTGNRLFYKLNIGIP---HNFFYAC----------YG------KEEV 548
Query: 531 DLAGTGSFYNEGEA---EIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+GT SF N EA E ++ H+F +G++ I V +PY Q H+ R+ E
Sbjct: 549 STSGT-SFVNPMEALYCESIIRHLFK---SGITEKQIGVITPYEGQRSHILNRIFG-SEP 603
Query: 588 AGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSST 647
+E++ +D FQGRE D +I+S+VRSN +GF+GD RRMNVA+TRA + ++ + +T
Sbjct: 604 GNLEISNVDGFQGREKDYIIVSLVRSNLYQGIGFVGDKRRMNVALTRAKHGLIIIGNPNT 663
Query: 648 I 648
+
Sbjct: 664 M 664
>gi|18202669|sp|Q98TR3.1|RENT1_FUGRU RecName: Full=Putative regulator of nonsense transcripts 1;
AltName: Full=ATP-dependent helicase RENT1
gi|13161880|emb|CAC33025.1| hypothetical protein [Takifugu rubripes]
Length = 1097
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 130/440 (29%), Positives = 209/440 (47%), Gaps = 59/440 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 466 QRPLSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVR 525
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E ++S ++ + D +L+ Q LKD++ L++
Sbjct: 526 LCAKSR-----------EAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGELSSADE 574
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL--------DTFDLVGKR 416
+ + L +T ++ E+L +A V+ T A DP + ++ ++ +
Sbjct: 575 KRYRALKRTAER-------ELLMNADVIWCTCVRAGDPRLAKMQFRSILIDESTQATEPK 627
Query: 417 CI----LAGDQCQLAPV------ILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
CI L Q L + ++ +KA + G+ SL ER L G+ +L QYRM
Sbjct: 628 CIGPVELGAKQLILGEITASWSCVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRM 685
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
+ A++++ S Y GSL + T + F P + P+ T+
Sbjct: 686 HPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQ--PEKPMFFYVTQ---------G 734
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQHLRERLD 582
+E + +GT S+ N EA V L+ AG P I + +PY Q VQ+++
Sbjct: 735 QEEIASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGS 793
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+ VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V +V
Sbjct: 794 LHTKLYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIV 853
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL + +
Sbjct: 854 GNPKALSKQPLWNNLLNNYK 873
>gi|300176550|emb|CBK24215.2| unnamed protein product [Blastocystis hominis]
Length = 939
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 147/456 (32%), Positives = 216/456 (47%), Gaps = 58/456 (12%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAA 291
K + Q A+ LNK L +IQGPPGTGKT + II V+ +RVLV AP+N A
Sbjct: 417 KQLNGFQLDAVKNALNKH--LTLIQGPPGTGKTVVSATIIYHIVKSYKQRVLVCAPSNIA 474
Query: 292 VDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
VDN+ +L +GL +VR+ AR +V S+ + + LA +V S+L K L
Sbjct: 475 VDNLTLRLHRLGLCVVRL--VARSRESVRSE-VENVCLHNLAVYVGG---PTSELYK-LN 527
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
L+++ QL ++ K +LS A+VV T + A D + L +F
Sbjct: 528 AKLQENG------QLSEKEAALYKSYLTIAEHTILSHAEVVCCTCSAALDARLAGL-SFP 580
Query: 412 LV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
V R IL GD QL PVI ++A +SL ER +L
Sbjct: 581 AVLVDESTQAREPECLIPIVNGCDRLILVGDHKQLGPVIQDQEAKRAEFDISLFERLLSL 640
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
G+ L QYRM+ A++ + S Y G+L ++ +S + F P + P++
Sbjct: 641 --GIKPYCLNIQYRMHPALSIFPSNMFYNGAL-KNAVHSSERTRNLAFPWPR--SDMPMM 695
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ G E D +G SF N EA V V I G+ I V +PY
Sbjct: 696 FWCVQ--------GSE---DPGSSGRSFLNRMEATCVEKVVERFINCGIPGDRIGVITPY 744
Query: 571 VAQVQHLRE----RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSR 626
+Q LR+ ++ E VE+A++D FQGRE D +I S VRSN+ G +GFL D R
Sbjct: 745 DSQRTLLRQVLSRHMEKAEEVKKVEIASVDEFQGRENDYIIFSCVRSNSDGVLGFLNDMR 804
Query: 627 RMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
R+NVAITRA + ++ + +T+ + L+ H +
Sbjct: 805 RLNVAITRAKYGIVIIGNPNTLRSHPIWVELMNHFQ 840
>gi|448521196|ref|XP_003868449.1| Sen1 helicase [Candida orthopsilosis Co 90-125]
gi|380352789|emb|CCG25545.1| Sen1 helicase [Candida orthopsilosis]
Length = 1946
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 181/702 (25%), Positives = 296/702 (42%), Gaps = 144/702 (20%)
Query: 77 VVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGE 136
+V T T + G + V F + L+ D++ + CD+ + ++ +
Sbjct: 1120 LVGTRTSVDGFYDV-FTSMSKKTIENRKLTESDLLVI-ACDNESIIQPKERRNYIKS-PN 1176
Query: 137 DGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNP 196
C ++ E ++ +P +S + ++RI + L TL + + ++Q
Sbjct: 1177 TACCLAKIREIKYVNPEYSDV---TLRIAKTSPLVGTLAPKATIIGMRVMQ--------- 1224
Query: 197 SIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDD--------------SQKKA 242
+VT+ + + L+ DL D S + + K DD SQ KA
Sbjct: 1225 ----MVTVEREFSSLRGLQYYDLVD-SIISATPTVPKQVDDKDVEHMHKLYDVNMSQAKA 1279
Query: 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER------------------VLV 284
I +G + +IQGPPGTGKT + I+ ++ G +L+
Sbjct: 1280 I-IGSYQSEGFSLIQGPPGTGKTKTILGIVGYSLSHGTNEKVIEMPSKSSSPPSKAKILI 1338
Query: 285 TAPTNAAVDNMVEKLSD---------VGLNIVRVGNPARISPAVASKSLGEIVKSKLASF 335
AP+NAAVD +V +L + + L +VR+G I+PAV +L E+V +L +
Sbjct: 1339 CAPSNAAVDELVVRLRNGVKNSKGEHMPLKVVRLGRSDAINPAVKDLTLEELVDKELQTK 1398
Query: 336 VAEFE---------RKKSDLRKDLRQCLKDDSLAA----GIRQLLKQLGKT---LKKK-- 377
E K + R LR L D++L G++Q L ++ K L KK
Sbjct: 1399 QVEVVTDPNLRSELNKMTQERDRLRSRLNDETLDPKEKDGVQQKLLEINKQRSELTKKLD 1458
Query: 378 ---EKETV----KEV---------LSSAQVVLATNTGAADPLIRRLD-TFDLV------- 413
E+ ++ KE+ LS A ++ AT +G+A L+ L TFD V
Sbjct: 1459 DQRERSSIAYRNKEIDRRNIQARILSEANILCATLSGSAHDLVANLSVTFDQVIIDEACQ 1518
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
K+CI+ GD QL P +LS+ A SL R + + L
Sbjct: 1519 CLESAAIIPLRYGCKKCIMVGDPNQLPPTVLSQSAASLNYDQSLFVRMQQNYPDSVYL-L 1577
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
TQYRM+ I+ + S E Y LI D P +K P L+D PY
Sbjct: 1578 NTQYRMHPMISKFPSAEFYQSKLI-----------DGPGMKEK--NTRPWHLIDPLSPYR 1624
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEI---VVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
+ H T S +N+ EA + +V + +++ I + SPY Q++ +
Sbjct: 1625 FFDI-VSRHEKNELTRSLFNKEEANVCLQLVQKMMTMVPQSDIAGKIGIISPYKEQIRTI 1683
Query: 578 RERLDDLPEAAG------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
+ + A G ++ T+D FQG+E + +I+S VR++ G VGFL D RRMNVA
Sbjct: 1684 KSVFE---RAYGRLIFNEIDFNTVDGFQGQEKEIIIMSCVRASANGNVGFLSDVRRMNVA 1740
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPG 673
+TRAC + ++ + +++ + RLL V A G
Sbjct: 1741 LTRACTTLWILGNKTSLERDAVWKRLLEDAEKRNTVTKAHSG 1782
>gi|320580258|gb|EFW94481.1| DEAD-box type RNA helicase [Ogataea parapolymorpha DL-1]
Length = 968
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 158/503 (31%), Positives = 223/503 (44%), Gaps = 98/503 (19%)
Query: 229 GIMGKTF--DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286
G M +T+ +DSQ +AIA G K +IQGPPGTGKT + II A+ G
Sbjct: 306 GRMKQTYAVNDSQARAIA-GTVHKDGFSLIQGPPGTGKTKTILGIIGCALTSGN------ 358
Query: 287 PTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDL 346
P A+ +E+L D L+ V A +K + E RK
Sbjct: 359 PN--AIATTLEELVDAQLSAVDTA-------ADDTK-------------IREEHRKCVHE 396
Query: 347 RKDLRQCLKDDSLAAGIRQLLKQLGKTLKK-KEKETVKE-------------VLSSAQVV 392
R +LRQ LAAG ++ K+LG+ L + +E+ +VK +LSSA+VV
Sbjct: 397 RDELRQ-----KLAAGNKR--KELGRRLDELREQNSVKHRNREIERRNAQFRILSSAEVV 449
Query: 393 LATNTGAADPLIRRLD-TFDLV--------------------GKRCILAGDQCQLAPVIL 431
+T +G+A ++ + TFD V KRCI+ GD QL P +L
Sbjct: 450 CSTLSGSAHDVLAGMSFTFDTVVIDEAAQCIELSAIIPLRYGAKRCIMVGDPNQLPPTVL 509
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
S+KA SL R H+ + L QYRM+ I+ + SKE Y L+ S +A
Sbjct: 510 SQKAASFNYEQSLFVRMQNNHDNAVYL-LNVQYRMHPEISKFPSKEFYDSKLLDGSGMAE 568
Query: 492 HLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEI---VV 548
T P + PY ++ H T S YN EA+I +V
Sbjct: 569 K-------------TARPWHAIQEYGPYRFFNIEGS-HQQNEQTKSLYNYAEAKIALEIV 614
Query: 549 HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDD---LPEAAGVEVATIDSFQGREADA 605
+F+L P I + SPY Q++ +RE P ++ T+D FQG+E D
Sbjct: 615 SDLFALFPDEQWPGKIGIISPYKEQIRCIREVFVQKFGFPITKEIDFNTVDGFQGQEKDI 674
Query: 606 VIISMVRSNTLGA-VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYF 664
V+ S VR+ + VGFLGD RRMNVA+TRA + V+ T+ N L+ +
Sbjct: 675 VLFSCVRAGEQNSGVGFLGDVRRMNVALTRARSSLWVLGSRETLMSNKTWRDLIDDLYER 734
Query: 665 GRVKHAEPG---SFGGSGLGMDP 684
G V A PG GG G +P
Sbjct: 735 GLVTRAYPGFTRKKGGLGDNYEP 757
>gi|50302599|ref|XP_451235.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640366|emb|CAH02823.1| KLLA0A05324p [Kluyveromyces lactis]
Length = 1445
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 135/463 (29%), Positives = 211/463 (45%), Gaps = 88/463 (19%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
+ +F+++QK AI L + LI+ G PGTGKT ++ E+++ V QG+ V+VT+ TN+
Sbjct: 1030 LNDSFNENQKMAIERSLTCRDYNLIL-GMPGTGKTSVICELVSILVNQGKSVMVTSYTNS 1088
Query: 291 AVDNMVEKLSD--VGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK 348
AVDN++ KL+ +VR+G+ R+ V + E++
Sbjct: 1089 AVDNIIMKLTSRIPRSKMVRLGSGRRVHDLVKPYCITEMLDG------------------ 1130
Query: 349 DLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIR-RL 407
+ E + E++ +AQVV T G DP ++ R
Sbjct: 1131 -----------------------------DNENLSEIIDAAQVVGVTCLGINDPWLQMRN 1161
Query: 408 DTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERA 448
FD V G + IL GD QL P++ + A + G+ SL E+
Sbjct: 1162 GDFDYVILDEASQVSLPVAIGPLRFGYKFILVGDHYQLPPLVKNSFARDNGLQESLFEKL 1221
Query: 449 ATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF----VKPTW 504
H + +L QYRMN I S ++ +YGG L + ++ P + TW
Sbjct: 1222 CHSHPQSVV-ELQLQYRMNAEIMSLSNVLIYGGKLQCGTDEIRRQVLQFPNNYKCSQDTW 1280
Query: 505 ITQC-----PLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGV 559
+ + P+++LD G S ++ ++ G N GEA +V V L+ G+
Sbjct: 1281 LQKAINPEQPVVILDHD---GFQSTSNQQFVEQNDHGQLSNVGEANVVNEVVRELLAHGI 1337
Query: 560 SPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAV 619
I V S Y AQ+ L+ L+DL ++V T D FQGR+ D +IISMVRSN A
Sbjct: 1338 EVDQIGVMSMYKAQMSLLKTTLEDL----DIDVLTADQFQGRDKDCIIISMVRSNPDQAS 1393
Query: 620 G-FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
G L D RR+NVA++RA K + ++C I L + H+
Sbjct: 1394 GVLLRDLRRINVAVSRAKKKLIIICSWKCISKIHPLKPFVDHV 1436
>gi|308810357|ref|XP_003082487.1| tRNA-splicing endonuclease positive effector (SEN1) (ISS)
[Ostreococcus tauri]
gi|116060956|emb|CAL56344.1| tRNA-splicing endonuclease positive effector (SEN1) (ISS)
[Ostreococcus tauri]
Length = 1079
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 205/429 (47%), Gaps = 52/429 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ+ A+ L ++ L +IQGPPGTGKT I+ ++ G VL T+ +N AVD
Sbjct: 632 LNASQRDAMKAALERR--LTLIQGPPGTGKTHTSVAIVRGMLEIGHGPVLCTSDSNTAVD 689
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRK-DLRQ 352
NMVE L+ G+N++R+G P + P +A +++ + + E ++ LR Q
Sbjct: 690 NMVEGLAKAGVNVIRLGRPEAVRPDLARYQ----IENAIPPGATKHEAYEAQLRAVRYAQ 745
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
+ AG L + + E V E +S V LA
Sbjct: 746 AICATCSGAGSDFLDRINFSAVMLDEASQVTEPMS--LVPLANGC--------------- 788
Query: 413 VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
++ +L GD QL P ++SR+A G+ +SL +R GV L TQ+RM+ AI+
Sbjct: 789 --QQLVLVGDHKQLPPTVVSREAELAGMTLSLFDRLT--RAGVKPYLLDTQFRMHPAISH 844
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDL 532
+ S Y G L+ S T A F P I P+ T E +
Sbjct: 845 FPSHSFYNG-LVKSGTPAKDRPAPKGFQWP--IPSVPIAFCPT----------PENSKET 891
Query: 533 AGTGSFYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRERL---------D 582
S+ N EAE V+ + ++ AG + P + + +PY AQV+ +R L D
Sbjct: 892 NDNLSYSNRVEAERVLEILLGVLSAGELRPCHVGIVTPYAAQVKLIRSMLRQRGVRTGVD 951
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
AG+EV+++D +QGRE + +I+S VR+N L +GF+ D+RR NV +TRA + V VV
Sbjct: 952 RDTGEAGIEVSSVDGYQGREKELMIVSTVRANDLNTIGFVADARRCNVTLTRARRGVIVV 1011
Query: 643 CDSSTICHN 651
+ST+ +
Sbjct: 1012 GHASTLSKD 1020
>gi|353241966|emb|CCA73744.1| related to regulator of nonsense transcripts 1 [Piriformospora
indica DSM 11827]
Length = 850
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 232/496 (46%), Gaps = 79/496 (15%)
Query: 214 LEENDLADWSE-------VKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTG 266
+++ + DW+ V +G T + SQ +AIAL ++ L ++QGPPGTGKT
Sbjct: 298 IDDPSILDWANRHSITPPVHKEGDPVVTLNASQTQAIALMFKER--LSLVQGPPGTGKTR 355
Query: 267 LLKE---IIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKS 323
+ E I+ + +LV TN AVDN+VE ++D G+N +RVGN +
Sbjct: 356 TIIEALRILKSHFKVEHPLLVCTYTNVAVDNLVEGIADAGMNPLRVGNEGGAQMERHPR- 414
Query: 324 LGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIR--QLLKQLGKTLKKKEKET 381
E+V K+ + +A+ + + LR+++ D + R + L ++ K E
Sbjct: 415 WPEVV--KIMNEIAQIRQIRDRLRREMGSAPSDQQKESISRLGNKIHLLRESKAKLESAM 472
Query: 382 VKEVLSSAQVVLATNTGAADPLIRRLDTFDLVG--------------------KRCILAG 421
+ SA V+ T A R +D F +V K L G
Sbjct: 473 RYMIFKSADVICTTCITAGSSAFRMMD-FPVVFLDEASMSTEPASLIPLMHGCKHLALIG 531
Query: 422 DQCQLAPVILSRKALEGGIGVSLLERAATLHEG-VLATKLTTQYRMNDAIASWASKEMYG 480
D QL PVI S A EGG+G SL ER + EG V + L TQYRM+ +I+++ S E YG
Sbjct: 532 DHKQLPPVITSELAKEGGLGKSLFER--LIEEGSVPSVMLDTQYRMHPSISAFPSDEFYG 589
Query: 481 GSL----IS-----SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
+L IS +T+A + K + P +L + + H +
Sbjct: 590 KALRDGTISPAGGVPATLAPPHSMHLARRKSKLTGEIPAVLF----------IHHDNH-E 638
Query: 532 LAGTGSFYNEGEAEIV--VHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERL-------D 582
++ S N E +IV V L+ G+ I + SPYVAQV+ L + L D
Sbjct: 639 ISRDRSRANLEEMKIVAAVLEDLLLMNPGLRGRDIGIISPYVAQVRMLNKMLKEDSSWAD 698
Query: 583 DLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAIT 633
+A G VE+ T+D F+GRE + +I S VR+N+ G +GFL D RRMNVA+T
Sbjct: 699 AFRDALGDPRCHELQDVEIKTVDGFEGREKEIIIFSTVRNNSWGHIGFLADRRRMNVALT 758
Query: 634 RACKHVAVVCDSSTIC 649
RA + + VV ST+
Sbjct: 759 RAKRALFVVGSISTLS 774
>gi|300175280|emb|CBK20591.2| unnamed protein product [Blastocystis hominis]
Length = 861
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 216/464 (46%), Gaps = 65/464 (14%)
Query: 224 EVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKE--IIARAVQQGER 281
EV D + + SQ AIA L + +IQGPPGTGKT + + R G
Sbjct: 416 EVSFDAPNLRPLNRSQHDAIAYALQSE--FTLIQGPPGTGKTAYRNDPKHLWRFKTPGP- 472
Query: 282 VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER 341
VLV P+N A D + ++ G+N+VR+ AV+ +S+ V+ +L + E
Sbjct: 473 VLVCTPSNVAADEICARIHRTGVNVVRLM-------AVSKESMESPVQ-ELCVHIKAREL 524
Query: 342 KKSDLRKDLR-QCLKDDSLA---AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
K++ + L Q DD A R +K+ GK ++ V+ SA VV++T
Sbjct: 525 MKAEASELLAIQTRHDDGEEIEEADWRHFMKESGKYKRR--------VIQSADVVVSTCD 576
Query: 398 GAADPLIRRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALE 437
A PL+ F+ V R +L GDQ QL PV+LS
Sbjct: 577 SAGSPLLSGC-VFNSVLVDEASQATECETLIPIVHGAHRVVLVGDQKQLQPVVLSAVCKR 635
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT 497
G VSL ER + G+ L QYRM+ A++ +++ + Y G L A+ L+
Sbjct: 636 AGYDVSLFER--LIDSGMEPQLLCVQYRMHPALSVFSNHKFYEGRLEDGIGEANRPLI-- 691
Query: 498 PFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS-FYNEGEAEIVVHHVFSLIC 556
F P T+ PLL + + G S+G TGS F N EA VV+ V L+
Sbjct: 692 KFCYPN--TKVPLLFWNVK---GRESIG--------NTGSSFLNVQEATAVVNIVKELMQ 738
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
G+ I V + Y Q L+ L VE A++++FQGRE D +++S VRSN +
Sbjct: 739 CGIKEKKIGVITSYTGQKVLLKNLLQQ-SRLGKVECASVNTFQGREMDYIVLSCVRSNPM 797
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
+GFL D +R+NVA+TRA + +V D+S + +N L +
Sbjct: 798 RIIGFLKDPKRLNVALTRARFGMIIVGDTSVLKYNDLWKEYLSY 841
>gi|440794946|gb|ELR16091.1| hypothetical protein ACA1_224920 [Acanthamoeba castellanii str.
Neff]
Length = 1615
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 150/502 (29%), Positives = 225/502 (44%), Gaps = 82/502 (16%)
Query: 233 KTFD-----DSQKKAIALGLNKKRPLLIIQGPPGTGKTGL---LKEIIARAVQQGERVLV 284
K FD +SQ+K I L +K L ++QGPPGTGKT L L +++ + +L
Sbjct: 321 KNFDAWKLNESQRKVITTILTRK--LTLVQGPPGTGKTTLAIHLMKLLVHLCRGHAPILC 378
Query: 285 TAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKS 344
TA TN AVDN++E L+D G+ VRVG P +I + SL +++ A+ K
Sbjct: 379 TADTNVAVDNLLEGLADSGVRAVRVGRPVKIREELRDLSLEALMQEHAAN------NKLD 432
Query: 345 DLRKDL---RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
LR++L + AA R+ + L + +++ E +VL A V+ AT GA
Sbjct: 433 ALRQELAGLSHGKTPEERAAAKREGVT-LHQNIRRLEDYIHNDVLGKADVICATCIGAGH 491
Query: 402 PLIRRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIG 441
L+ F +V + +L GD QL P + S +A +GG+
Sbjct: 492 DLLASR-AFPIVILDESTQATEPASLCALVHNSQHVVLLGDHYQLPPTVTSPEAQQGGLS 550
Query: 442 VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
SL R + G+ L QYRM+ I+ + S YGG I VA+ T
Sbjct: 551 ESLFARMIAM--GIEPYMLEIQYRMHPIISEFPSVHFYGGK-IKDGIVAAQRPSPTGIAW 607
Query: 502 PTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSP 561
P+ + +D G E+ S++N E E V F L+ A
Sbjct: 608 PSEGNPIAFVNVD----------GYEKQS--TDGYSWFNSAEGEAV----FQLVSAFDQR 651
Query: 562 SA------IAVQSPYVAQVQHL------RERLDDLPEAAGVEVATIDSFQGREADAVIIS 609
S I V +PY QV+HL R ++ + + + ++D +QGRE + +I +
Sbjct: 652 SDVGDVKDIGVITPYNGQVKHLADLFSRRGGMNKNEKWHKLNINSVDGYQGREKEVIIFT 711
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR------- 662
VRSN+ G VGFL D RR+NVA+TRA + + VV + T+ + + LR I
Sbjct: 712 AVRSNSRGDVGFLRDWRRLNVALTRARRGLLVVGNRRTLQSDEHWGKWLRWIDTHRLGTN 771
Query: 663 ---YFGRVKHAEPGSFGGSGLG 681
GR H + G SG G
Sbjct: 772 LQAILGRGHHPPAPAGGRSGSG 793
>gi|414871608|tpg|DAA50165.1| TPA: hypothetical protein ZEAMMB73_963119 [Zea mays]
Length = 341
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 124/210 (59%), Gaps = 8/210 (3%)
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
+ + LT QYRM++ I SW+SKE+Y + + S+VA H+L D V + T+ ++L+DT
Sbjct: 129 ITSMLTVQYRMHEHIMSWSSKELYNNKIKAHSSVAGHMLYDLEEVTRSSSTEPTIVLIDT 188
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
GC+ S NEGEA + + H L+ +GV+ S I + +PY AQV
Sbjct: 189 --------TGCDMEEVKDEEESTMNEGEAAVSIAHAKLLVESGVNASDIGIITPYAAQVT 240
Query: 576 HLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
L+ + + +E++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TRA
Sbjct: 241 CLKMMRNKDAKLKDLEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRA 300
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+ +VCD T+ + FL RL+ + G
Sbjct: 301 RRQCCLVCDVETVSSDRFLKRLVEYFEENG 330
>gi|440789574|gb|ELR10880.1| putative DNA helicase [Acanthamoeba castellanii str. Neff]
Length = 1656
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 143/472 (30%), Positives = 217/472 (45%), Gaps = 72/472 (15%)
Query: 233 KTFD-----DSQKKAIALGLNKKRPLLIIQGPPGTGKTGL---LKEIIARAVQQGERVLV 284
K FD +SQ+K I L +K L ++QGPPGTGKT L L +++ + +L
Sbjct: 322 KNFDAWKLNESQRKVITTILTRK--LTLVQGPPGTGKTTLAIHLMKLLVHLCRGHAPILC 379
Query: 285 TAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKS 344
TA TN AVDN++E L+D G+ VRVG P +I + SL +++ A+ K
Sbjct: 380 TADTNVAVDNLLEGLADSGVRAVRVGRPVKIREELRDLSLEALMQEHAAN------NKLD 433
Query: 345 DLRKDL---RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
LR++L + AA R+ + L + +++ E +VL A V+ AT GA
Sbjct: 434 ALRQELAGLSHGKTPEERAAAKREGVT-LHQNIRRLEDYIHNDVLGKADVICATCIGAGH 492
Query: 402 PLIRRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIG 441
L+ F +V + +L GD QL P + S +A +GG+
Sbjct: 493 DLLASR-AFPIVILDESTQATEPASLCALVHNSQHVVLLGDHYQLPPTVTSPEAQQGGLS 551
Query: 442 VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
SL R + G+ L QYRM+ I+ + S YGG I VA+ T
Sbjct: 552 ESLFARMIAM--GIEPYMLEIQYRMHPIISEFPSVHFYGGK-IKDGIVAAQRPSPTGIAW 608
Query: 502 PTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSP 561
P+ + +D G E+ S++N E E V F L+ A
Sbjct: 609 PSEGNPIAFVNVD----------GYEKQS--TDGYSWFNSAEGEAV----FQLVSAFDQR 652
Query: 562 SA------IAVQSPYVAQVQHL------RERLDDLPEAAGVEVATIDSFQGREADAVIIS 609
S I V +PY QV+HL R ++ + + + ++D +QGRE + +I +
Sbjct: 653 SDVGDVKDIGVITPYNGQVKHLADLFSRRGGMNKNEKWHKLNINSVDGYQGREKEVIIFT 712
Query: 610 MVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
VRSN+ G VGFL D RR+NVA+TRA + + VV + T+ + + LR I
Sbjct: 713 AVRSNSRGDVGFLRDWRRLNVALTRARRGLLVVGNRRTLQSDEHWGKWLRWI 764
>gi|226530450|ref|NP_001146778.1| uncharacterized protein LOC100280381 [Zea mays]
gi|219888715|gb|ACL54732.1| unknown [Zea mays]
Length = 274
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 124/210 (59%), Gaps = 8/210 (3%)
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
+ + LT QYRM++ I SW+SKE+Y + + S+VA H+L D V + T+ ++L+DT
Sbjct: 62 ITSMLTVQYRMHEHIMSWSSKELYNNKIKAHSSVAGHMLYDLEEVTRSSSTEPTIVLIDT 121
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
GC+ S NEGEA + + H L+ +GV+ S I + +PY AQV
Sbjct: 122 --------TGCDMEEVKDEEESTMNEGEAAVSIAHAKLLVESGVNASDIGIITPYAAQVT 173
Query: 576 HLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
L+ + + +E++T+D FQGRE +A+IISMVRSN+ VGFL D RRMNVA+TRA
Sbjct: 174 CLKMMRNKDAKLKDLEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRA 233
Query: 636 CKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
+ +VCD T+ + FL RL+ + G
Sbjct: 234 RRQCCLVCDVETVSSDRFLKRLVEYFEENG 263
>gi|354545469|emb|CCE42197.1| hypothetical protein CPAR2_807460 [Candida parapsilosis]
Length = 1950
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 144/521 (27%), Positives = 228/521 (43%), Gaps = 112/521 (21%)
Query: 231 MGKTFD--DSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--------- 279
M K FD SQ KAI +G + +IQGPPGTGKT + I+ ++ G
Sbjct: 1268 MYKHFDVNMSQAKAI-IGSYQSEGFSLIQGPPGTGKTKTILGIVGYSLSHGVNEKAIEAP 1326
Query: 280 ---------ERVLVTAPTNAAVDNMVEKL---------SDVGLNIVRVGNPARISPAVAS 321
++L+ AP+NAAVD +V +L ++ L +VR+G I+ AV
Sbjct: 1327 SKSASPSSRAKILICAPSNAAVDELVVRLRNGVRNSKGENMPLKVVRLGRSDAINQAVRD 1386
Query: 322 KSLGEIVKSKLASFVAEFE---------RKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGK 372
+L E+V +L + + KK+ R LR L D++L + R ++Q +
Sbjct: 1387 LTLEELVDKELQTKQVDVATDQNLRPELNKKTQERDTLRSRLNDETLDSKERDDVQQKLR 1446
Query: 373 TLKKKEKETVKE-------------------------VLSSAQVVLATNTGAADPLIRRL 407
+ K+ E K+ +LS A ++ AT +G+A L+ L
Sbjct: 1447 EINKQRSELAKKLDEQRERTSIAYRNKEIDRRNIQARILSEANILCATLSGSAHDLVANL 1506
Query: 408 D-TFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLE 446
TFD V +RCI+ GD QL P +LS+ A SL
Sbjct: 1507 AVTFDQVIIDEACQCSESAAIIPLRYGCRRCIMVGDPNQLPPTVLSQTAASLNYDQSLFV 1566
Query: 447 RAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWIT 506
R H + L TQYRM+ I+ + S E Y LI D P ++
Sbjct: 1567 RMQKNHPDSIYL-LNTQYRMHPMISKFPSAEFYQSKLI-----------DGPGMQEK--N 1612
Query: 507 QCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEI---VVHHVFSLICAGVSPSA 563
P +D PY + H T S YN EA + +V + +++
Sbjct: 1613 TRPWHSVDPLSPYRFFDI-VSRHEKNELTRSLYNTEEANVCLQLVQKMMTMVPQKDIAGK 1671
Query: 564 IAVQSPYVAQVQHLRERLDDLPEAAG------VEVATIDSFQGREADAVIISMVRSNTLG 617
I + SPY Q++ ++ + A G ++ T+D FQG+E + +I+S VR++ G
Sbjct: 1672 IGIISPYKEQIKTIKRVFE---RAFGRLIFNEIDFNTVDGFQGQEKEIIIMSCVRASANG 1728
Query: 618 AVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
++GFL D RRMNVA+TRAC + ++ + +++ + RL+
Sbjct: 1729 SIGFLSDIRRMNVALTRACTTLWILGNKNSLARDEVWKRLI 1769
>gi|380491432|emb|CCF35325.1| DNA-binding protein SMUBP-2 [Colletotrichum higginsianum]
Length = 246
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 139/251 (55%), Gaps = 25/251 (9%)
Query: 443 SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPF-VK 501
+L +R LH + LTTQYRM++ I + S E+Y G LI++ V LL D P+ V+
Sbjct: 6 TLFDRLLALHGSSIKRMLTTQYRMHEKIMRFPSDELYEGKLIAAEAVKQRLLRDLPYEVE 65
Query: 502 PTWITQCPLLLLDTR---LPYGSLSLGCEEHLDLAGTGSFY-------NEGEAEIVVHHV 551
T T PL+ +DT+ P S ++ D F NE EA +V HV
Sbjct: 66 DTEDTNEPLIFIDTQGGDYPEKS----EDDDKDAVKKAKFSLHGESKSNEMEAALVRQHV 121
Query: 552 FSLICAGVSPSAIAVQSPYVAQVQ---HLRERLDDLPEAAGVEVATIDSFQGREADAVII 608
L+ AGV P IAV +PY AQ+ HL+ER G+E+ ++D FQGRE +AVI+
Sbjct: 122 QKLVDAGVKPEDIAVVTPYNAQLAVLAHLKERF------PGIELGSVDGFQGREKEAVIV 175
Query: 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH-NTFLARLLRHIRYFGRV 667
S+VRSN+ G VGFLG+ RR+NVA+TR + + V+ DS T+ + FL R + + +
Sbjct: 176 SLVRSNSDGEVGFLGEKRRLNVAMTRPKRSLTVIGDSETVKRGSNFLKRWMDFLEENADL 235
Query: 668 KHAEPGSFGGS 678
++ + S GS
Sbjct: 236 RYPDLLSLQGS 246
>gi|219125350|ref|XP_002182946.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405740|gb|EEC45682.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 237
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 131/226 (57%), Gaps = 19/226 (8%)
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL------VDTPFVKPTWITQ 507
G ++ L QYRM+ IA WAS+ +YGG+L +++ V S L +D +
Sbjct: 19 GRVSRMLRVQYRMHKLIADWASQALYGGALQTATNVQSRTLAQLTGCLDEEEDCFGAASN 78
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
LLL+DT GC H + GS +NEGEA+IV HV +L+ GV IA+
Sbjct: 79 AALLLIDT--------TGCNMHESVNAAGSRFNEGEAQIVRQHVQTLLDMGVRQEQIAII 130
Query: 568 SPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAV---GFLGD 624
SPY QV+ LR L LP+A +E+ ++D FQG E +AV++S+VRS+ G V GFLGD
Sbjct: 131 SPYNGQVELLRSAL--LPDAPHLEIRSVDGFQGGEREAVVLSLVRSSARGGVDGIGFLGD 188
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+RR+NVA+TRA +H VVCDS T+ + F+ L+ I G + A
Sbjct: 189 NRRLNVAVTRAKRHCCVVCDSGTVSKSPFIRGLVDWIEEHGETRAA 234
>gi|402086548|gb|EJT81446.1| DNA helicase [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 852
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 130/388 (33%), Positives = 194/388 (50%), Gaps = 48/388 (12%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T ++SQK A+ L + +I GPPGTGKT L E+I + ++QG R+LV AP+N AVD
Sbjct: 219 TLNESQKDAVRFALASPE-IALIHGPPGTGKTHTLIELILQFLKQGLRILVCAPSNVAVD 277
Query: 294 NMVEKLS-DVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
N+ E+L+ G IVR+G+PAR+ P+VA+ SL + ++ A + R + D ++ +
Sbjct: 278 NVAERLAPHSGAPIVRIGHPARLLPSVAAHSLDVLTQTSEAGAIVRDVRAEMDAKQGSIK 337
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
K I LK+L K +++E+ V +++ S++VVLAT GA +R+ + FD+
Sbjct: 338 KTKSARERRLIYADLKELRKEFRERERRCVTDLVRSSKVVLATLHGAGGFQLRQ-EKFDV 396
Query: 413 V-------------------GKRCILAGDQCQLAPVILSRKALE---------------- 437
V K+ + AGD QL P I S +
Sbjct: 397 VIIDEASQALEAQCWVALFAAKKAVCAGDHLQLPPTIKSLNSKTPTAAGGAAPAAAKGKG 456
Query: 438 --GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV 495
+ +L +R LH + LTTQYRM++ I + S E+YG L ++ V LL
Sbjct: 457 RGATLETTLFDRLLKLHGASIKRMLTTQYRMHEKIMRFPSDELYGSELTAAEAVKGRLLR 516
Query: 496 DTPF-VKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTG-------SFYNEGEAEIV 547
D P+ V+ T T+ PL+ +DT+ S E D AG S NE EA +V
Sbjct: 517 DLPYAVEDTDETREPLIFIDTQGGNFSERSDDTEAGDAAGKKKIALHGESKSNEREAALV 576
Query: 548 VHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
V L+ AGV P IAV +PY QV+
Sbjct: 577 SQQVRLLVDAGVKPEDIAVVTPYNGQVR 604
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 589 GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
G+E+ ++D FQGRE +AVI+S+VRSN+ G VGFLG+ RR+NVA+TR + + ++ DS T+
Sbjct: 768 GIELGSVDGFQGREKEAVIVSLVRSNSEGEVGFLGEKRRLNVAMTRPKRSLTIIGDSDTV 827
Query: 649 CHNT-FLARLLRHIRYFGRVKHAE 671
+ FL R + H+ +++ E
Sbjct: 828 KRGSAFLKRWMEHLEEHADLRYPE 851
>gi|183220768|ref|YP_001838764.1| putative helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|167779190|gb|ABZ97488.1| Putative helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 593
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 209/441 (47%), Gaps = 52/441 (11%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
++ GPPGTGKT LL + +++ QQ E VL PTN A D +VE G+ ++R+GN +
Sbjct: 171 MVFGPPGTGKTTLLMQAVSQITQQKESVLTLCPTNFACDYIVELAIQKGIRVIRLGNSTK 230
Query: 315 ISPAVASKSLGEIVKS-----KLASFVAEF---ERKKSDLRKDLRQCLKDDSLAAGIRQL 366
I V L ++++ ++ ++ E ++K + +++ + +++ +R+
Sbjct: 231 IKEEVLPYHLDHLIQTHPDQKQIQNWQTELKVIQKKINSWKRNFGKEEREER--NNLRKE 288
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLD-TF------------- 410
K L T++++E ++L +++++++T G + R+ D TF
Sbjct: 289 AKFLVHTIREQESTIRTKLLDTSELIVSTFAGFGNEFKKGRKFDYTFVDEATQSVDPGCY 348
Query: 411 --DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
GK+ GD QL ++ + S LE+ L G L Q+RM
Sbjct: 349 MAMFSGKKTFFFGDPKQLG---VNYSHPDHKTVASFLEKVIDLDSGERTIFLEKQFRMKP 405
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
I + + Y + + + L PF + + + P+L +DT S EE
Sbjct: 406 EILGFPNLTYYENKVFTHPNLT--FLTSPPFSE-IFGSDTPILWVDTAGSDTSEETEGEE 462
Query: 529 HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA 588
SF+NE E ++ + G+ AV SPY QV L R D
Sbjct: 463 M-------SFFNETEIGLIE----TFFERGLPKETTAVVSPYRGQVDKLNLRAD------ 505
Query: 589 GVEVA-TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSST 647
G + TIDSFQGRE++ VI+S+VRSN G +GFL + +R+NVA+TRA H+ ++ DSST
Sbjct: 506 GRWIGQTIDSFQGRESEIVILSLVRSNPDGEIGFLMNPKRLNVALTRAKSHLILIGDSST 565
Query: 648 ICHNTFLARLLRHIRYFGRVK 668
+C + L +I G ++
Sbjct: 566 LCRHKEFQDLYNYIESNGEIR 586
>gi|189910869|ref|YP_001962424.1| DNA and RNA helicase subunit [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167775545|gb|ABZ93846.1| DNA and RNA helicase subunit [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
Length = 608
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 209/441 (47%), Gaps = 52/441 (11%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
++ GPPGTGKT LL + +++ QQ E VL PTN A D +VE G+ ++R+GN +
Sbjct: 186 MVFGPPGTGKTTLLMQAVSQITQQKESVLTLCPTNFACDYIVELAIQKGIRVIRLGNSTK 245
Query: 315 ISPAVASKSLGEIVKS-----KLASFVAEF---ERKKSDLRKDLRQCLKDDSLAAGIRQL 366
I V L ++++ ++ ++ E ++K + +++ + +++ +R+
Sbjct: 246 IKEEVLPYHLDHLIQTHPDQKQIQNWQTELKVIQKKINSWKRNFGKEEREER--NNLRKE 303
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLD-TF------------- 410
K L T++++E ++L +++++++T G + R+ D TF
Sbjct: 304 AKFLVHTIREQESTIRTKLLDTSELIVSTFAGFGNEFKKGRKFDYTFVDEATQSVDPGCY 363
Query: 411 --DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
GK+ GD QL ++ + S LE+ L G L Q+RM
Sbjct: 364 MAMFSGKKTFFFGDPKQLG---VNYSHPDHKTVASFLEKVIDLDSGERTIFLEKQFRMKP 420
Query: 469 AIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE 528
I + + Y + + + L PF + + + P+L +DT S EE
Sbjct: 421 EILGFPNLTYYENKVFTHPNLT--FLTSPPFSE-IFGSDTPILWVDTAGSDTSEETEGEE 477
Query: 529 HLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA 588
SF+NE E ++ + G+ AV SPY QV L R D
Sbjct: 478 M-------SFFNETEIGLIE----TFFERGLPKETTAVVSPYRGQVDKLNLRAD------ 520
Query: 589 GVEVA-TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSST 647
G + TIDSFQGRE++ VI+S+VRSN G +GFL + +R+NVA+TRA H+ ++ DSST
Sbjct: 521 GRWIGQTIDSFQGRESEIVILSLVRSNPDGEIGFLMNPKRLNVALTRAKSHLILIGDSST 580
Query: 648 ICHNTFLARLLRHIRYFGRVK 668
+C + L +I G ++
Sbjct: 581 LCRHKEFQDLYNYIESNGEIR 601
>gi|307109973|gb|EFN58210.1| hypothetical protein CHLNCDRAFT_142077 [Chlorella variabilis]
Length = 442
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 157/508 (30%), Positives = 228/508 (44%), Gaps = 110/508 (21%)
Query: 163 RIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEEN--DLA 220
R+ R+Q L + TYER+ EAL LQ+ ++ P A + + +W E + A
Sbjct: 6 RLWRLQRLCNMTTYERSMEALCELQQ----EQAPGAACRLLV------ESWFNEGCINAA 55
Query: 221 DWSEVK-LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279
++ K L T +DSQ +AI +PL +I GPPGTGKT + ++ Q+
Sbjct: 56 QQADAKQLHPACIATCNDSQCEAIQAA--AAQPLTLIHGPPGTGKTHTIAHLLENLFQKR 113
Query: 280 ER--VLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA 337
+ VLVTA TN AVDN++ KL + A + G +++ A V
Sbjct: 114 QETPVLVTAGTNVAVDNILRKLLSC------------LGAASSQAQPGRLLRVGDAGNVG 161
Query: 338 EFERKKSDLRKDL-RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATN 396
KDL R CL+ G+R + + V++ L A V T
Sbjct: 162 ----------KDLQRYCLEAQE---GLR--------SPYGFDSRRVRKALRHALAVFTTC 200
Query: 397 TGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVI-------LSRKALEGGIGVSLLERAA 449
TG L+ D C+ V+ L KAL+ + +SL ER +
Sbjct: 201 TGTGSKLL-----------------DGCRFGAVVVDEASQVLFEKALKFRLDISLFERCS 243
Query: 450 TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCP 509
+ +L L TQYRM+ AIAS+ + YGG L SS T + T+I
Sbjct: 244 QSLQPLL---LDTQYRMHPAIASFPNSTFYGGRLRSSPTTGASTPPPPLPAPVTFIN--- 297
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI--------CAGVSP 561
+ D R GS S YN EA+ VV + L+ C V
Sbjct: 298 --VADGRESLGS---------------SKYNAREADAVVGLLRQLLGRRSGSSDCGTVGG 340
Query: 562 SAIAVQSPYVAQVQHLRERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG 620
+ I V +PY AQ + LR R L PE +E++T+D+FQGRE + +IIS VR+N+ +G
Sbjct: 341 ADIGVVTPYRAQAEQLRRRTQQLWPE---LEISTVDAFQGREKEVIIISPVRANSCERLG 397
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTI 648
F+ D RR+NVA+TRA + V VV T+
Sbjct: 398 FVSDRRRLNVALTRAMRAVVVVGHRETL 425
>gi|199594059|gb|ACH90516.1| ERI-6/7 [Caenorhabditis elegans]
Length = 925
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 124/448 (27%), Positives = 202/448 (45%), Gaps = 55/448 (12%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN- 294
++ Q+ AI + LN+ R L+ IQGPPGTGKT L ++ R +QQ ++V+V APT A+ N
Sbjct: 367 NEKQRTAIKMALNENRKLVCIQGPPGTGKTFTLTLLLCRLIQQKKQVVVLAPTREALANI 426
Query: 295 -MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQ 352
M+ K + + R+G + + +++ KS A AE R DLR+
Sbjct: 427 RMMTKKT-----LKRMGIKVHEHALMDTNEYRDVINKSDRALMAAEEVR-------DLRK 474
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD- 411
+ + + ++Q + + E EV+ + +V AT + + + FD
Sbjct: 475 AFDNGEITENVLDEMRQ--SIINRVRNEVGAEVIGNVRVAFATIGASFVDFVMKHKKFDP 532
Query: 412 --------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
KR ++AGD QL ++ + +A G+ S+++R
Sbjct: 533 CLCIIDEAAQVMEAQTWPAVYKMKRIVMAGDPKQLPALVFTDEAKAFGLQNSVMDRILEK 592
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC--P 509
L QYR N IA+W++ Y L + + L +P P
Sbjct: 593 KNNFSWIMLENQYRSNAKIATWSNTCFYHNQLKTDVKCHEYSLHTILNPQPKKFRNLFDP 652
Query: 510 LLLLDTRLPYG-SLSLGCEEH-------LDLAGTG-SFYNEGEAEIVVHHVFSLICAGVS 560
L+L+DT L L EH ++ G S+ N EA+I + H L+ GV
Sbjct: 653 LVLIDTSLERDVEKRLETYEHAVFDTNSINKTKQGFSYANLAEAKIAIGHYQRLLKYGVQ 712
Query: 561 PSAIAVQSPYVAQVQHLRERLDDLPEAAG------VEVATIDSFQGREADAVIISMVRSN 614
PS IA+ +PY Q + + +++ G + T+DS QG+E + VI +MVRSN
Sbjct: 713 PSDIAIITPYKGQTSLVTKLMEEFGAETGYTDFVQTTIGTVDSVQGKEYEVVIFTMVRSN 772
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVV 642
+GF+ + RR+NV ITRA +H +
Sbjct: 773 PRKTMGFVSELRRLNVVITRAKRHFMFI 800
>gi|328351981|emb|CCA38380.1| hypothetical protein PP7435_Chr2-0694 [Komagataella pastoris CBS
7435]
Length = 2154
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 151/520 (29%), Positives = 226/520 (43%), Gaps = 116/520 (22%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-----------------AVQQ 278
+ SQ +AIA G + +IQGPPGTGKT + I+ + AV
Sbjct: 1277 NKSQAQAIA-GASTSSGFSLIQGPPGTGKTKTILGIVGKVLTTRNNLHSTPISIPGAVTS 1335
Query: 279 GER--------VLVTAPTNAAVDNMVEKLSD---------VGLNIVRVGNPARISPAVAS 321
G R VLV AP+NAAVD +V +L + +VR+G I+ AV
Sbjct: 1336 GPRKPETGVRKVLVCAPSNAAVDELVIRLREGVPGISGQMFKPKVVRLGRSDAINSAVKD 1395
Query: 322 KSLGEIVKSKLASF---------VAEFERKKSDLRKDLRQCLKDDS------------LA 360
+L E+V ++L + E K R +R+ LK+ S
Sbjct: 1396 LTLEELVDAELNETARAPKADQSIREKHNKVLAERNSIREALKEVSNLKPEEVKDLQKRY 1455
Query: 361 AGIRQLLKQLGKTLKKKEKETVK--------------EVLSSAQVVLATNTGAADPLIRR 406
+ I + +LGK L ++ +E +LS AQ++ +T +G+A +
Sbjct: 1456 SEITKAKNELGKKLDEQREEVSVSYRNREIQRRAVQFRILSQAQIICSTLSGSAHDFLAT 1515
Query: 407 LDT-FDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
+DT FD V KRCI+ GD QL P +LS+ A E SL
Sbjct: 1516 MDTSFDTVVIDEACQCIELSAIIPLRYGCKRCIMVGDPNQLPPTVLSQAAAEYKYEQSLF 1575
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI 505
R +H + L QYRM+ I+ + SKE Y G LI + +W
Sbjct: 1576 VRMMNVHPKSVYL-LNVQYRMHPQISVFPSKEFYNGKLIDGEGTETK-------NTRSWH 1627
Query: 506 TQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS---PS 562
+ P PY + + +E + + S +N EA+ VV + +L+ S
Sbjct: 1628 KKIP--------PYCFIDVTGKESTNTSNK-SLFNRAEAQAVVSLIDALLGLDRDFNFAS 1678
Query: 563 AIAVQSPYVAQVQHLRER-LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
I V SPY QV LR+ L G++V T+D FQG+E D ++ S VR++ VGF
Sbjct: 1679 KIGVISPYKQQVVLLRDMILRKFGRNIGIDVNTVDGFQGQEKDVILFSCVRADETKGVGF 1738
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
L D RR+NVA+TRA + +V +S + ++ L RH+
Sbjct: 1739 LADVRRLNVALTRAKSTLLIVGHASNLSGHS----LWRHL 1774
>gi|254568798|ref|XP_002491509.1| Presumed helicase required for RNA polymerase II transcription
termination and processing of RNAs [Komagataella pastoris
GS115]
gi|238031306|emb|CAY69229.1| Presumed helicase required for RNA polymerase II transcription
termination and processing of RNAs [Komagataella pastoris
GS115]
Length = 2146
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 151/520 (29%), Positives = 226/520 (43%), Gaps = 116/520 (22%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-----------------AVQQ 278
+ SQ +AIA G + +IQGPPGTGKT + I+ + AV
Sbjct: 1277 NKSQAQAIA-GASTSSGFSLIQGPPGTGKTKTILGIVGKVLTTRNNLHSTPISIPGAVTS 1335
Query: 279 GER--------VLVTAPTNAAVDNMVEKLSD---------VGLNIVRVGNPARISPAVAS 321
G R VLV AP+NAAVD +V +L + +VR+G I+ AV
Sbjct: 1336 GPRKPETGVRKVLVCAPSNAAVDELVIRLREGVPGISGQMFKPKVVRLGRSDAINSAVKD 1395
Query: 322 KSLGEIVKSKLASF---------VAEFERKKSDLRKDLRQCLKDDS------------LA 360
+L E+V ++L + E K R +R+ LK+ S
Sbjct: 1396 LTLEELVDAELNETARAPKADQSIREKHNKVLAERNSIREALKEVSNLKPEEVKDLQKRY 1455
Query: 361 AGIRQLLKQLGKTLKKKEKETVK--------------EVLSSAQVVLATNTGAADPLIRR 406
+ I + +LGK L ++ +E +LS AQ++ +T +G+A +
Sbjct: 1456 SEITKAKNELGKKLDEQREEVSVSYRNREIQRRAVQFRILSQAQIICSTLSGSAHDFLAT 1515
Query: 407 LDT-FDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
+DT FD V KRCI+ GD QL P +LS+ A E SL
Sbjct: 1516 MDTSFDTVVIDEACQCIELSAIIPLRYGCKRCIMVGDPNQLPPTVLSQAAAEYKYEQSLF 1575
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI 505
R +H + L QYRM+ I+ + SKE Y G LI + +W
Sbjct: 1576 VRMMNVHPKSVYL-LNVQYRMHPQISVFPSKEFYNGKLIDGEGTETK-------NTRSWH 1627
Query: 506 TQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS---PS 562
+ P PY + + +E + + S +N EA+ VV + +L+ S
Sbjct: 1628 KKIP--------PYCFIDVTGKESTNTSNK-SLFNRAEAQAVVSLIDALLGLDRDFNFAS 1678
Query: 563 AIAVQSPYVAQVQHLRER-LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
I V SPY QV LR+ L G++V T+D FQG+E D ++ S VR++ VGF
Sbjct: 1679 KIGVISPYKQQVVLLRDMILRKFGRNIGIDVNTVDGFQGQEKDVILFSCVRADETKGVGF 1738
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
L D RR+NVA+TRA + +V +S + ++ L RH+
Sbjct: 1739 LADVRRLNVALTRAKSTLLIVGHASNLSGHS----LWRHL 1774
>gi|354610036|ref|ZP_09027992.1| DEAD-like helicase [Halobacterium sp. DL1]
gi|353194856|gb|EHB60358.1| DEAD-like helicase [Halobacterium sp. DL1]
Length = 748
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 150/469 (31%), Positives = 215/469 (45%), Gaps = 105/469 (22%)
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
Q++A+ + ++ I GPPGTGKT L +A AV +GERVLVTA +N AVDN++
Sbjct: 348 QRRALGWAVAADD-VVCIHGPPGTGKTRTLVAFVAHAVARGERVLVTAHSNQAVDNLL-- 404
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
VG + + AVA+ S ++ VA + R +
Sbjct: 405 ---VGDSTPDDAEEGTLHAAVAADS--DVT-------VARYGRHSRN------------- 439
Query: 359 LAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----- 413
R + +Q T + A VV AT GAA R D FD+
Sbjct: 440 -----RVVAEQYRGT-----------PVDGADVVAATTNGAA--AFDR-DAFDVAVVDEA 480
Query: 414 --------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459
++ +LAGD QL P ++ +A EG + SL E + +A
Sbjct: 481 TQASRAATAIAHACAEKLVLAGDHRQLPPYSVT-EAGEGEMRPSLFETLVERYGDRVAVL 539
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPY 519
L QYRM++AIA++ ++ Y G L ++ A L P P+ L+D
Sbjct: 540 LCRQYRMHEAIATFPNEAFYDGRLETADRNADWTLDGFP----------PVSLVD----- 584
Query: 520 GSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
+ EE + G S N EAE+VV V L+ AGVSP+ + V + Y QV+ +R
Sbjct: 585 ----VAGEERREERGA-SVRNPQEAEVVVDRVTRLLDAGVSPADVGVIAAYSGQVREIRS 639
Query: 580 RLDDLP-EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS----RRMNVAITR 634
RL L E G+ V T+DSFQG E DA+++S RSN G GFL S RR+NVA+TR
Sbjct: 640 RLGTLDRETDGLTVDTVDSFQGGERDAIVVSFARSNPEGNAGFLEHSAEGPRRLNVALTR 699
Query: 635 ACKHVAVVCDSSTI------------CHNTFLARLLRHIRYFGRVKHAE 671
A KH+A+V D T+ C +T+ A L + V+HA+
Sbjct: 700 ARKHLALVGDWDTLRSRAAHRDPADSCADTY-ADLYETLVEMNGVEHAQ 747
>gi|324518959|gb|ADY47250.1| DNA-binding protein SMUBP-2, partial [Ascaris suum]
Length = 377
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 144/265 (54%), Gaps = 10/265 (3%)
Query: 412 LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
L RC+LAGD CQL V+ S +A+ G+G SL+E V+ L+ Q+RMN+ I
Sbjct: 107 LQAPRCVLAGDHCQLPTVLHSSEAISQGLGTSLMETLDKEFGSVVKHFLSVQHRMNEKIM 166
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
W++ Y L + +VA L D + + + PLL++DT S G ++
Sbjct: 167 RWSADYFYESKLQAHRSVAGISLSDISAIDGSDLMNEPLLMIDTHSV--SRQRGLSVSVE 224
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
S+ N GEAEIV +V L+ GV + V SPY AQV+ LR+ L G E
Sbjct: 225 RIHQQSYRNHGEAEIVCAYVQFLMRKGVRQCDVGVISPYFAQVELLRKTL-------GEE 277
Query: 592 VA-TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
+ T+D FQG++ + +++S+VR+N G +GFL D+RR+NVA+TRA + +V SS + H
Sbjct: 278 IVNTVDGFQGQQREVIVMSLVRNNYEGRIGFLSDARRLNVAVTRARRQFLLVGSSSMMRH 337
Query: 651 NTFLARLLRHIRYFGRVKHAEPGSF 675
L LL IR G+V + +F
Sbjct: 338 AEHLRSLLECIRTVGKVLRPDQLTF 362
>gi|71981659|ref|NP_491374.2| Protein ERI-7 [Caenorhabditis elegans]
gi|373253976|emb|CCD64256.1| Protein ERI-7 [Caenorhabditis elegans]
Length = 625
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 124/448 (27%), Positives = 202/448 (45%), Gaps = 55/448 (12%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN- 294
++ Q+ AI + LN+ R L+ IQGPPGTGKT L ++ R +QQ ++V+V APT A+ N
Sbjct: 67 NEKQRTAIKMALNENRKLVCIQGPPGTGKTFTLTLLLCRLIQQKKQVVVLAPTREALANI 126
Query: 295 -MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQ 352
M+ K + + R+G + + +++ KS A AE R DLR+
Sbjct: 127 RMMTKKT-----LKRMGIKVHEHALMDTNEYRDVINKSDRALMAAEEVR-------DLRK 174
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD- 411
+ + + ++Q + + E EV+ + +V AT + + + FD
Sbjct: 175 AFDNGEITENVLDEMRQ--SIINRVRNEVGAEVIGNVRVAFATIGASFVDFVMKHKKFDP 232
Query: 412 --------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
KR ++AGD QL ++ + +A G+ S+++R
Sbjct: 233 CLCIIDEAAQVMEAQTWPAVYKMKRIVMAGDPKQLPALVFTDEAKAFGLQNSVMDRILEK 292
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC--P 509
L QYR N IA+W++ Y L + + L +P P
Sbjct: 293 KNNFSWIMLENQYRSNAKIATWSNTCFYHNQLKTDVKCHEYSLHTILNPQPKKFRNLFDP 352
Query: 510 LLLLDTRLPYG-SLSLGCEEH-------LDLAGTG-SFYNEGEAEIVVHHVFSLICAGVS 560
L+L+DT L L EH ++ G S+ N EA+I + H L+ GV
Sbjct: 353 LVLIDTSLERDVEKRLETYEHAVFDTNSINKTKQGFSYANLAEAKIAIGHYQRLLKYGVQ 412
Query: 561 PSAIAVQSPYVAQVQHLRERLDDLPEAAG------VEVATIDSFQGREADAVIISMVRSN 614
PS IA+ +PY Q + + +++ G + T+DS QG+E + VI +MVRSN
Sbjct: 413 PSDIAIITPYKGQTSLVTKLMEEFGAETGYTDFVQTTIGTVDSVQGKEYEVVIFTMVRSN 472
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVV 642
+GF+ + RR+NV ITRA +H +
Sbjct: 473 PRKTMGFVSELRRLNVVITRAKRHFMFI 500
>gi|312071929|ref|XP_003138834.1| nonsense mRNA reducing factor 1 NORF1 [Loa loa]
Length = 1141
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 142/485 (29%), Positives = 217/485 (44%), Gaps = 98/485 (20%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ V+Q +VLV AP+N AVD
Sbjct: 458 LNHSQVHAVKTVL--QRPLSLIQGPPGTGKTVTSATIVYHLVKQTNGQVLVCAPSNIAVD 515
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
+ EK+ GL +VR+ +R E + S +A F+A + K+
Sbjct: 516 QLAEKIHRTGLKVVRLCAKSR-----------ETLDSPVA-FLALHNQLKA--------- 554
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEKE-----TVKE--VLSSAQVVLATNTGAADPLIRR 406
L + ++QL +++G+ E+ KE +L++A V+ T AAD +
Sbjct: 555 LHGAAELHKLQQLKEEIGELADADERRFRALRIAKECQLLAAADVICCTCVSAADSRLSH 614
Query: 407 L--------------DTFDLVGKRC-----ILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+ + +V C +L GD CQL PVI+ +KA + G+ SL ER
Sbjct: 615 MRIKCVLIDESTQATEPEVMVAVVCGVRQLVLVGDHCQLGPVIMCKKAAKAGLSQSLFER 674
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
L G +L QYRM+ A++S+ S Y GSL + T L+ + P +
Sbjct: 675 LVLL--GNRPIRLQVQYRMHPALSSFPSNVFYEGSLQNGVTEGERQLIGIDWQWP--VPD 730
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567
P++ YG +E L +GT SF N EA V + AG+ P I +
Sbjct: 731 KPMMFWSC---YG------QEELSSSGT-SFLNRTEAANVEKLATRFLKAGIKPEQIGII 780
Query: 568 SPYVAQVQHLRERLDDLPEAAG-----VEVATIDSFQ----------------------- 599
+PY Q ++ + + +EVA +D+FQ
Sbjct: 781 TPYEGQRSYIVQFMQTQGALHSKLYLEMEVANVDAFQSYQQVGYSTETSRTLPLKVIGRS 840
Query: 600 ------GREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTF 653
GRE D +I++ VRSN +GFL DSRR+NVA+TRA + +V ++ + +
Sbjct: 841 MRFLHTGREKDIIIVTCVRSNDHQGIGFLNDSRRLNVALTRAKFGLIIVGNAKVLSRHPL 900
Query: 654 LARLL 658
LL
Sbjct: 901 WNYLL 905
>gi|324524295|gb|ADY48391.1| DNA-binding protein SMUBP-2, partial [Ascaris suum]
Length = 280
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 144/265 (54%), Gaps = 10/265 (3%)
Query: 412 LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIA 471
L RC+LAGD CQL V+ S +A+ G+G SL+E V+ L+ Q+RMN+ I
Sbjct: 10 LQAPRCVLAGDHCQLPTVLHSSEAISQGLGTSLMETLDKEFGSVVKHFLSVQHRMNEKIM 69
Query: 472 SWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLD 531
W++ Y L + +VA L D + + + PLL++DT S G ++
Sbjct: 70 RWSADYFYESKLQAHRSVAGISLSDISAIDGSDLMNEPLLMIDTHSV--SRQRGLSVSVE 127
Query: 532 LAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
S+ N GEAEIV +V L+ GV + V SPY AQV+ LR+ L G E
Sbjct: 128 RIHQQSYRNHGEAEIVCAYVQFLMRMGVRQCDVGVISPYFAQVELLRKTL-------GEE 180
Query: 592 VA-TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
+ T+D FQG++ + +++S+VR+N G +GFL D+RR+NVA+TRA + +V SS + H
Sbjct: 181 IVNTVDGFQGQQREVIVMSLVRNNYEGRIGFLSDARRLNVAVTRARRQFLLVGSSSMMRH 240
Query: 651 NTFLARLLRHIRYFGRVKHAEPGSF 675
L LL IR G+V + +F
Sbjct: 241 AEHLRSLLECIRTVGKVLRPDQLTF 265
>gi|405119638|gb|AFR94410.1| DNA helicase [Cryptococcus neoformans var. grubii H99]
Length = 903
Score = 152 bits (384), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 140/481 (29%), Positives = 226/481 (46%), Gaps = 72/481 (14%)
Query: 212 TWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEI 271
+W E + V+++G + +Q +A+ + L++ L ++QGPPGTGKT ++ E
Sbjct: 436 SWAERHRSEREIPVEVEGDPYIPLNRTQLRAMGMMLSEA--LSLVQGPPGTGKTRVIVET 493
Query: 272 IA---RAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSL---- 324
I Q +LV A TN AVDN++ + G+ +R G R+ + SL
Sbjct: 494 IKLLKHHFQIPHPILVCAHTNVAVDNLLAGMIKHGVKAIRTGMAERVPADLKQYSLEIKM 553
Query: 325 -GEIVKSKLASFVAEFERKKSDL-RKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETV 382
+ + + + V + +R K ++ R D + ++ +K++ + + +
Sbjct: 554 ESHPMWTSVQTMVEKAKRLKDEIFRMDFGNPERQQKISE-----MKKIWRQIWGIRQSIT 608
Query: 383 KEVLSSAQVV-------LATNTGAADPLIRRLDTFDLVGKRCIL------------AGDQ 423
+E+L A VV ++ N + D I LD + + L GD
Sbjct: 609 RELLLDADVVCTTCISAISANLNSIDFPIVFLDEASMATEPLTLLPLMKGSSHVAIIGDH 668
Query: 424 CQLAPVILSRKALEGGIGVSLLERAATLHE-GVLATKLTTQYRMNDAIASWASKEMYGGS 482
QL PVI+S+ A GG+ SL ER +HE V + L TQYRM+ ++A+++SK Y
Sbjct: 669 KQLPPVIVSQDAHAGGLSTSLFER--LIHEKDVPSIMLDTQYRMHPSLAAFSSKTFYSSL 726
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEE---------HLDLA 533
L + + + +T F+ I + P+ T G L L E+ HL+
Sbjct: 727 LKNGTPASERPPPETAFL----IPEDPIPDPST----GELRLSGEKTNLTFLNHSHLESP 778
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAG--VSPSAIAVQSPYVAQVQHLRERL------DDLP 585
S NEGEAEI+V V L+ + S I + +PY+ Q++ + E L D L
Sbjct: 779 VLQSMANEGEAEIIVDVVTDLLHKNPDLKGSQIGIIAPYLGQIKVVSETLFASRTQDSLK 838
Query: 586 ---------EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
E VE+ T+D F+GRE + +I S VRSN G +GFLGD RR+NV +TRA
Sbjct: 839 TILGDERTEEVQDVEIKTVDGFEGREKEVIIFSTVRSNAGGYIGFLGDWRRVNVGLTRAR 898
Query: 637 K 637
+
Sbjct: 899 R 899
>gi|363753828|ref|XP_003647130.1| hypothetical protein Ecym_5575 [Eremothecium cymbalariae DBVPG#7215]
gi|356890766|gb|AET40313.1| hypothetical protein Ecym_5575 [Eremothecium cymbalariae DBVPG#7215]
Length = 1497
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 135/466 (28%), Positives = 219/466 (46%), Gaps = 92/466 (19%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
F+ Q KAI + K LI+ G PGTGKT ++ E+I + G+ VL+ + T++AVDN
Sbjct: 1084 FNRDQAKAIDKVMRCKDYALIL-GMPGTGKTTVVAELIKILTKNGKSVLLASYTHSAVDN 1142
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
++ KL D + ++R+G+ ++ P K+ V +F++ ++
Sbjct: 1143 ILLKLLDAEVRMIRLGHIHKLHP-------------KVRHLVPDFDKTET---------- 1179
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIR-RLDTFDLV 413
D LA L+ QVV T G DP++ R FD V
Sbjct: 1180 -HDQLAFS-----------------------LNEPQVVATTCLGINDPMLNLRNKDFDYV 1215
Query: 414 -------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEG 454
G++ IL GD QL P++ + A E G+ +L + H
Sbjct: 1216 ILDEASQVSLPIALGPIRFGEKFILVGDHYQLPPLVKNEIAKEKGLEETLFKTLCQRHPA 1275
Query: 455 VLATKLTTQYRMNDAIASWASKEMYGGSL------ISSSTVASHL----LVDTPFVKPTW 504
+ T+LT QYRMN I + +++ +Y G L +++ T+A + + + P+++
Sbjct: 1276 SV-TELTIQYRMNTDIMALSNELIYNGKLKCGNDSVANQTLAIQMDIAAISNPPWLRDVL 1334
Query: 505 ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564
Q ++LLD YG + + ++A + N GEA +V + LI GVS I
Sbjct: 1335 DPQRKVVLLD----YGDIP----DMQEMADKDNIRNPGEARLVKLIIEGLISLGVSTLDI 1386
Query: 565 AVQSPYVAQVQHLRERLDDLPEAAG--VEVATIDSFQGREADAVIISMVRSNTLGAVG-F 621
V + Y +Q++ LR L LP + +E+ T D FQGR+ + +IISMVRSN G
Sbjct: 1387 GVMTLYRSQLRLLRSEL--LPHSNNNHLEILTADQFQGRDKECIIISMVRSNDKQNAGLL 1444
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
L + RR+NVA++RA + ++C TIC+ + LR + G V
Sbjct: 1445 LRELRRVNVAMSRAKSKLILICSKRTICNVKEIHGFLRLVERNGWV 1490
>gi|321256931|ref|XP_003193410.1| DNA helicase [Cryptococcus gattii WM276]
gi|317459880|gb|ADV21623.1| DNA helicase, putative [Cryptococcus gattii WM276]
Length = 954
Score = 151 bits (382), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 146/512 (28%), Positives = 236/512 (46%), Gaps = 74/512 (14%)
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
QK+G+ RN I +W E + V+++G + +Q +A+ +
Sbjct: 425 QKSGILSRNTLIR------------SWAERHRSGREIPVEVEGDPHVPLNRTQLRAMGMM 472
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIA---RAVQQGERVLVTAPTNAAVDNMVEKLSDVG 303
L + L ++QGPPGTGKT ++ E I Q +LV A TN AVDN++ + G
Sbjct: 473 LTEA--LSLVQGPPGTGKTRVIVETIKLLKHHFQIPHPILVCAHTNVAVDNLLAGMVKHG 530
Query: 304 LNIVRVGNPARISPAVASKSLGEIVKSK-LASFVAEFERKKSDLRKDLRQCLKDDSLAAG 362
+ +R G R+ + +L ++S + V K L+ ++ + D+
Sbjct: 531 VKAIRTGTAERVPAELKQYTLEIKMESHPMWISVQSMTEKAKRLKDEIFRMDFDNPERQQ 590
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVV-------LATNTGAADPLIRRLDTFDLVGK 415
+K++ + + ++ +E+L A VV ++ N + D I LD + +
Sbjct: 591 KNLEMKKIWRQIWGIQQIINRELLLDADVVCTTCISAISANLNSIDFPIVFLDEASMATE 650
Query: 416 RCIL------------AGDQCQLAPVILSRKALEGGIGVSLLERAATLHE-GVLATKLTT 462
L GD QL PVI+S A GG+ SL ER +HE V + L T
Sbjct: 651 PLTLLPLMKGSSHVAIIGDHKQLPPVIVSGDAHAGGLSTSLFER--LIHEKDVPSIMLDT 708
Query: 463 QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
QYRM+ ++A+++SK Y L + + + +T F+ P + P+ T G L
Sbjct: 709 QYRMHPSLAAFSSKTFYSSLLKNGTAASERPPPETAFLIP----EDPIPDPST----GEL 760
Query: 523 SLGCEE---------HLDLAGTGSFYNEGEAEIVVHHVFSLICAG--VSPSAIAVQSPYV 571
L E+ H + S NEGEAEI+V + L+ + S I + +PY+
Sbjct: 761 RLSGEKTNLTFLNHSHPESPVLQSMANEGEAEIIVDVITDLLHKNPDLKGSQIGIIAPYL 820
Query: 572 AQVQHLRERL------DDLPEAAG---------VEVATIDSFQGREADAVIISMVRSNTL 616
Q++ L E L D L + G VE+ T+D F+GRE + +I S VRSN
Sbjct: 821 GQIKVLSETLFASGTQDSLKKILGDERTEEVQDVEIKTVDGFEGREKEVIIFSTVRSNPG 880
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
G +GFLGD RR+NV +TRA + + +V + T+
Sbjct: 881 GYIGFLGDWRRVNVGLTRARRALIMVGNKETL 912
>gi|45190389|ref|NP_984643.1| AEL218Wp [Ashbya gossypii ATCC 10895]
gi|44983285|gb|AAS52467.1| AEL218Wp [Ashbya gossypii ATCC 10895]
Length = 1471
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 222/454 (48%), Gaps = 56/454 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
F+ Q KAI + K LI+ G PGTGKT L+ EII + G+ VL+T+ T++AVDN
Sbjct: 1060 FNKDQLKAIDKAIRCKDYALIL-GMPGTGKTTLIAEIIRILARNGKNVLLTSYTHSAVDN 1118
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVAS--KSLGEI-VKSKLASFVAEFERKKSDLRKDLR 351
++ KL D L I R+G R+ P V +SL ++ +L S V EF+ +
Sbjct: 1119 ILLKLLDSELQIARLGYKHRVHPGVRHLVQSLEDVQTHEELVSSVDEFQVIAT------- 1171
Query: 352 QCLK-DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSA-QVVLATNTGAADPLIRRLDT 409
CL +DSL A L+ K + V +L A QV L G IR
Sbjct: 1172 TCLGVNDSLLA------------LRTKNFDYV--ILDEASQVSLPIALGP----IR---- 1209
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
G R +L GD QL P++ + A E G+ +L + H + T+LT QYRMN+
Sbjct: 1210 ---YGDRFLLVGDHYQLPPLVRNHIAKEDGLEDTLFQLLCDQHPSCM-TELTLQYRMNED 1265
Query: 470 IASWASKEMYGGSLI--SSSTVASHLLVDTP-FVKPTWITQ----CPLLLLDTRLPYGSL 522
I + +++ +Y G L S L ++ P + W+ + C +++ + Y ++
Sbjct: 1266 IMALSNELIYDGKLKCGDRSVAERALRIEVPKSITQPWLREALNPCKRVIM---INYDNI 1322
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD 582
E A + NEGE+ IV V L+ G S + I V + Y AQ++ L+ L
Sbjct: 1323 PSIRE----TADRDNIRNEGESRIVGLLVSGLLSCGASSADIGVMTLYRAQLRLLKSEL- 1377
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSN-TLGAVGFLGDSRRMNVAITRACKHVAV 641
P ++ +EV T D FQGR+ + VIIS VR N +L A L + RR+NVA++RA + +
Sbjct: 1378 -APHSSTLEVLTADQFQGRDKECVIISTVRCNPSLNAGALLRELRRVNVAMSRAKSKLIL 1436
Query: 642 VCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSF 675
VC +TI L LR + G V P ++
Sbjct: 1437 VCSLATISSVPQLQGFLRLLHRNGWVYTLSPSTY 1470
>gi|374107859|gb|AEY96766.1| FAEL218Wp [Ashbya gossypii FDAG1]
Length = 1471
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 148/454 (32%), Positives = 222/454 (48%), Gaps = 56/454 (12%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
F+ Q KAI + K LI+ G PGTGKT L+ EII + G+ VL+T+ T++AVDN
Sbjct: 1060 FNKDQLKAIDKAIRCKDYALIL-GMPGTGKTTLIAEIIRILARNGKNVLLTSYTHSAVDN 1118
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVAS--KSLGEI-VKSKLASFVAEFERKKSDLRKDLR 351
++ KL D L I R+G R+ P V +SL ++ +L S V EF+ +
Sbjct: 1119 ILLKLLDSELQIARLGYKHRVHPGVRHLVQSLEDVQTHEELVSSVDEFQVIAT------- 1171
Query: 352 QCLK-DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSA-QVVLATNTGAADPLIRRLDT 409
CL +DSL A L+ K + V +L A QV L G IR
Sbjct: 1172 TCLGVNDSLLA------------LRTKNFDYV--ILDEASQVSLPIALGP----IR---- 1209
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
G R +L GD QL P++ + A E G+ +L + H + T+LT QYRMN+
Sbjct: 1210 ---YGDRFLLVGDHYQLPPLVRNHIAKEDGLEDTLFQLLCDQHPSCM-TELTLQYRMNED 1265
Query: 470 IASWASKEMYGGSLI--SSSTVASHLLVDTP-FVKPTWITQ----CPLLLLDTRLPYGSL 522
I + +++ +Y G L S L ++ P + W+ + C +++ + Y ++
Sbjct: 1266 IMALSNELIYDGKLKCGDRSVAERALRIEVPKSITQPWLREALNPCKRVIM---INYDNI 1322
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD 582
E A + NEGE+ IV V L+ G S + I V + Y AQ++ L+ L
Sbjct: 1323 PSIRE----TADRDNIRNEGESRIVGLLVSGLLSCGASSADIGVMTLYRAQLRLLKSEL- 1377
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSN-TLGAVGFLGDSRRMNVAITRACKHVAV 641
P ++ +EV T D FQGR+ + VIIS VR N +L A L + RR+NVA++RA + +
Sbjct: 1378 -APHSSTLEVLTADQFQGRDKECVIISTVRCNPSLNAGALLRELRRVNVAMSRAKSKLIL 1436
Query: 642 VCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSF 675
VC +TI L LR + G V P ++
Sbjct: 1437 VCSLATISSVPQLQGFLRLLHRNGWVYTLSPSTY 1470
>gi|412993880|emb|CCO14391.1| predicted protein [Bathycoccus prasinos]
Length = 1285
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 137/445 (30%), Positives = 202/445 (45%), Gaps = 95/445 (21%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ +A+ L ++ + +IQGPPGTGKT ++ ++ + +L T+ +N AVD
Sbjct: 728 MNKSQHEALRAALFQR--ITLIQGPPGTGKTHTAVALVQMWLKCRTMPILCTSDSNIAVD 785
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+V+ LS G+ + R+G P E V+ L F+ E
Sbjct: 786 NLVDGLSRAGVRVARIGRP-------------EAVRQDLMPFMVES-------------- 818
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEK-ETVKEVLSSAQVVLATNTGAADPLIRRLD---- 408
AGI + G + K ++ + + VL A+V+ AT GA ++ R
Sbjct: 819 ------IAGI-----EPGSNMSKDQQYQAINGVLRRAEVICATCAGAGSDILERFSFAAC 867
Query: 409 ------------TFDLVGKRC---ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
T + K C +L GDQ QL P I+SR A E G+G SL ER L
Sbjct: 868 LIDEATQATEPATVVPMTKGCKQIVLIGDQNQLPPTIISRDADERGLGTSLFER--MLSR 925
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
G+ L QYRM+ AIA + S++ Y L+S T S F P + PL +
Sbjct: 926 GIRTFMLKVQYRMHPAIAKFPSQQFYSNELLSG-TPPSQRRAPQGFDWP--VPAVPLAFV 982
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVA 572
D C E + + S N EA+ VV V L+ V I + SPY A
Sbjct: 983 D-----------CPEGEERSDGASQMNTIEAQKVVTLVKKLMAEHEVLACDIGIVSPYAA 1031
Query: 573 QVQHLRERLDDLPEA---------------AGVEVATIDSFQGREADAVIISMVRSNTLG 617
QV+ +++ L P A A +EV +ID FQGRE + ++ S R+N +G
Sbjct: 1032 QVRAIKKLLQ--PNAVKRTRFDAPAAPDSDAAIEVCSIDGFQGREKEVIVFSCTRANLMG 1089
Query: 618 AVGFLGDSRRMNVAITRACKHVAVV 642
VGFL D RR+NV +TRA + + +V
Sbjct: 1090 NVGFLADRRRVNVMLTRARRGLIIV 1114
>gi|123448689|ref|XP_001313071.1| possible regulator of nonsense transcripts [Trichomonas vaginalis
G3]
gi|121894941|gb|EAY00142.1| possible regulator of nonsense transcripts, putative [Trichomonas
vaginalis G3]
Length = 814
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 155/566 (27%), Positives = 253/566 (44%), Gaps = 87/566 (15%)
Query: 129 GFVHNLGEDGCTISVALESRHGDPTFSKLFG-KSVRIDRIQGLADTLTYERNCEALMLLQ 187
F + + T S+ L+ GD SK +G S+++ R+Q +++T++R ++L +
Sbjct: 239 AFFNKFNDKEGTCSLCLK---GD---SKFYGANSLKVQRVQ---NSITFQRQLKSLDYM- 288
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKT------------- 234
KNGL + V LF K D + + + D + K
Sbjct: 289 KNGLEE------FWVNLFLGKFDKKQFQAKNGIKKIPLSKDIKVTKQSSGLNFIVRDKNT 342
Query: 235 ---FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTNA 290
+ SQ KA+ L+++ IQGPPGTGKT + I+ V G VL+ +N
Sbjct: 343 VIELNRSQGKAVEAALSQR--FTYIQGPPGTGKTTSITAIVKSFVDGGIFPVLIVGHSNV 400
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKK-SDLRKD 349
D LS++GL + RV + I A+ + L EI S+ + +ER K S +K
Sbjct: 401 TADFGCLALSNIGLKVGRVLS-LEIEDAIQAAKLNEI-DSEYNFIIPGYERSKFSTFQKA 458
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIR---R 406
+Q ++ + +K K+ + +++ QV+ T++ + + R
Sbjct: 459 KKQYIEKYGTEPDL------ASSKSYRKFKKIEQRIIADCQVICVTSSTSGSVRVEGNFR 512
Query: 407 LDTFDLVGK---------------RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
FD G+ R +L GD QL P I + G GV+L+++ L
Sbjct: 513 AIIFDEAGQCLDPDFLISMKHNPERLVLVGDTFQLGPTIQNNAVRNAGFGVNLMKKLVKL 572
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI---TQC 508
G++ LT QYRM+ +I + SK Y +L+ S A + F KP + Q
Sbjct: 573 --GLIPNILTYQYRMHPSILEFPSKTFYK-NLVKSGISAEQRIYK--FSKPNFKFPNPQI 627
Query: 509 PLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQS 568
PL+ D +E D G S++ + V + +L +GV ++I + +
Sbjct: 628 PLMFWDVE---------GKEQSDGDGK-SYWCLSQCNAVSQVLDALFNSGVPANSIGIIT 677
Query: 569 PYVAQVQHLRERLDDLPEAA------GVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
PY Q +L + LD + E+ VE+AT+D FQGRE D +I ++VRSN +GFL
Sbjct: 678 PYNGQNDYLMDNLDYICESCSAEYIKNVEIATVDGFQGREKDFIIFNLVRSNENYQIGFL 737
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTI 648
D R+NV+ITRA + V+ S T
Sbjct: 738 SDIERLNVSITRAKYGLIVIGHSRTF 763
>gi|412987528|emb|CCO20363.1| predicted protein [Bathycoccus prasinos]
Length = 985
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 145/508 (28%), Positives = 232/508 (45%), Gaps = 114/508 (22%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ------------- 277
K + SQ+KA+ + + L + +GPPGTGKT L +IA V
Sbjct: 504 YAKNLNPSQRKAVKAAM--QNTLTLWRGPPGTGKTRTLVALIASVVNYANVQENGGKSDR 561
Query: 278 ----------QGERVLVTAPTNAAVDNMVEKL----SDVGLNIVRVGNPARISPAVASKS 323
+G +VL A +N AVDN+++ L D +NI+R+G+PAR+ P + +
Sbjct: 562 GKSSNTQASWRGPKVLACAASNVAVDNILDALLREKIDRSMNILRLGSPARVQPWLLEST 621
Query: 324 LGEIV----KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEK 379
L V K K A+ + E R + L AA R+ +QL ++
Sbjct: 622 LSHKVALHPKGKEANSIRERFRGITSLE------------AAKARKQAQQL-------DR 662
Query: 380 ETVKEVLSSAQVVLATNTGAADPLI-RRLDTFDLVGK--RCI---------------LAG 421
E +V++++ V+LAT GA D L+ R+ + V + +C+ L G
Sbjct: 663 EAAIQVVNASDVILATCVGAGDDLLADRVFRYAFVDEAAQCVEPHTLIPLTKALAGVLVG 722
Query: 422 DQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGG 481
D QL P ++SR A+ G+ SL+ER L GV L QYRM+ +A+++S Y
Sbjct: 723 DTKQLPPTVVSRDAVAIGLQRSLIERLELL--GVEPYLLEEQYRMHPGLAAFSSVRFYDR 780
Query: 482 SLIS----SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGS 537
L S S VA + V+ P T PL ++ + E + S
Sbjct: 781 RLKSVPKPSERVAPNG-VNWP------STMVPLAFVEVK----------GEEMRAPDGNS 823
Query: 538 FYNEGEAEIVVHHVFSLICAGVSPSA--IAVQSPYVAQVQHLRERLD------------- 582
+N EAE V V L+ +G +A I + +PY AQV+ + E +
Sbjct: 824 IFNVQEAEECVRVVQKLLLSGDVKNAGDIGIIAPYAAQVRAISEEWNRKVTSDVKLKNTS 883
Query: 583 ----DLPEAAG--VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
D PE+A +E+ ++D FQGRE + +++ VR+N +GF+ D RR+NVAITRA
Sbjct: 884 VVEADNPESAKDELEIRSVDGFQGREKEVIVLCTVRNNRQNQLGFVADPRRLNVAITRAK 943
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYF 664
+ + V+ T+ + + L+ + +
Sbjct: 944 RGLIVLGHRDTLSTDQLWQKWLQFVDKY 971
>gi|308808322|ref|XP_003081471.1| tRNA-splicing endonuclease positive effector (SEN1) (ISS)
[Ostreococcus tauri]
gi|116059934|emb|CAL55993.1| tRNA-splicing endonuclease positive effector (SEN1) (ISS)
[Ostreococcus tauri]
Length = 1261
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 192/417 (46%), Gaps = 50/417 (11%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGL-NIVRVGNPA 313
++ G PG GKT L I QG+ +LVT+ T++A+DN++ +L DVG+ + +RVG
Sbjct: 850 LVLGYPGAGKTATLVVAIKALRAQGKSILVTSHTHSAIDNILSRLPDVGITDFLRVGEEQ 909
Query: 314 RISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKT 373
+ISP V LG ER + D+R+ + + +G
Sbjct: 910 KISPTVQPYMLGS-------------ERWSCTVSDDMRKISERAKIVGAT---CYAMGHA 953
Query: 374 LKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSR 433
+++ V + S Q+ L PL + K +L GD QL P+++S+
Sbjct: 954 FFQRKMYDVVLIDESGQITLP---NILPPL--------FMAKSFVLVGDHHQLPPLVVSK 1002
Query: 434 KALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH- 492
KA E G+ SL + H ++ T L+ QYRM + + + Y G L S + V +
Sbjct: 1003 KAAERGLNKSLFAQLCEAHPDIV-THLSLQYRMAEPLTRLPNLLTYDGKLRSGTEVVARQ 1061
Query: 493 -LLVDTP----FVKPTWITQC--PL---LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG 542
L ++ P P W+ P+ + LDT +LG H T NE
Sbjct: 1062 MLALEAPRGMYASAPQWLLHAMDPMNHFVFLDTS------ALGAAAHETPPPT---INEA 1112
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGRE 602
E +V+ V + + GV I SP+ AQV ++ L P GVE TID QGR+
Sbjct: 1113 ELSLVLTVVGAFVTHGVDAENICTLSPFNAQVDAMQASLSGYPALRGVEALTIDRAQGRD 1172
Query: 603 ADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLL 658
DA+ IS VRSN G L D RR+NVAITRA K + +V + T+ + L R +
Sbjct: 1173 MDAICISFVRSNEEALAGELLNDERRLNVAITRAKKKLVIVGCAKTLRSSPVLGRAI 1229
>gi|402468945|gb|EJW04018.1| hypothetical protein EDEG_01691 [Edhazardia aedis USNM 41457]
Length = 699
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 131/492 (26%), Positives = 219/492 (44%), Gaps = 85/492 (17%)
Query: 214 LEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA 273
LEEN+ +S K + +DSQK+A+ L K I GPPGTGKT + EII
Sbjct: 233 LEENE--KYSSFKF---LNVNLNDSQKEAVKLIF--KEISFKILGPPGTGKTTTIVEIIH 285
Query: 274 RAVQQGERVLVTAPTNAAVDNMVEKL--SDVGLNIVRVGNPARISPAVASKSLGEIVKSK 331
+ + + +++L+ P+NA++DN+++ + R+G+ + +L ++ +
Sbjct: 286 QLINKNKKLLICGPSNASIDNILQSFLKNPTKCVFFRLGSSFKCYKGFEKYNLNQLAQDS 345
Query: 332 LASFVAEFERKKSDLRKDLRQCLKDDSLAAGI-----RQLLKQLGKTLKKKEKETVKEVL 386
V + DL+K+ + + I + L ++ K +K K+ KE +
Sbjct: 346 ----VKYMQDHADDLKKNKEKAYSKKNTKNKIDLKQTKNELAEINKEIKTKQINFKKEKI 401
Query: 387 SSAQVVLATNTGA------------ADPLIRRLDTFDLV----GKRCILAGDQCQLAPVI 430
SA V+ +T + D + ++ L+ GK ILAGD QL PV
Sbjct: 402 KSANVIFSTLYSSLKLENVQFDWVIIDECCQSMEVESLMAISKGKNFILAGDPFQLGPVT 461
Query: 431 LSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVA 490
+ +SL ER L L QYRM + + S+++K Y +IS
Sbjct: 462 ------QLKYEISLFERLYKLQ----TIWLKEQYRMCELLISFSNKYFYKNIIISK---- 507
Query: 491 SHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVV-- 548
L D F + P+L +DT Y + S YNE EA I V
Sbjct: 508 --LKSDFKFFNIS-----PILFIDTSTSY---------QYESDSETSKYNEEEASICVKL 551
Query: 549 -----------HHVFSL------ICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVE 591
+ +F+ I S ++ V +PY AQVQ + + +D + +
Sbjct: 552 LSYINKQVKNQNQMFTSYKHSNSIVGDESLFSVGVIAPYSAQVQQITKNIDKYDYSCII- 610
Query: 592 VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
+T+DSFQG+E D +++S+VRSN +GFL + RR NVAITR K + ++ +S +
Sbjct: 611 -STVDSFQGQERDVMVLSLVRSNLENDIGFLEEIRRTNVAITRCKKGLVIIGNSLVFRKH 669
Query: 652 TFLARLLRHIRY 663
F + + +++
Sbjct: 670 PFYGKFINFLQH 681
>gi|412986744|emb|CCO15170.1| ATP-dependent helicase NAM7 [Bathycoccus prasinos]
Length = 974
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 125/428 (29%), Positives = 209/428 (48%), Gaps = 53/428 (12%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAV 292
++SQ++A++ L ++ L +IQGPPGTGKT I+ + G VL T+ +N AV
Sbjct: 538 NLNESQQRAVSATLERR--LSLIQGPPGTGKTHTSVAIVRGLIDIGRGPVLCTSDSNTAV 595
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN+VE L+ G+ +VR+G E V+ LA + E
Sbjct: 596 DNLVEGLARAGVRVVRIGR-------------TEAVRQDLAMYQIENMVPPG-------- 634
Query: 353 CLKDDSLAAGIR--QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
C K ++ A IR + + + T + + + SA V+L + +P+ L
Sbjct: 635 CTKHEAYEAQIRAVRYAQAVCCTCAGSGSDFLDRISFSA-VMLDEASQVTEPM--SLVPI 691
Query: 411 DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
++ +L GD QL P ILSR+A GG+ +S+ +R +L GV+ L TQ+RM+ A+
Sbjct: 692 SRGCQQLVLVGDHKQLPPTILSREAELGGLTLSMFDRLVSL--GVVPYMLDTQFRMHPAL 749
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ S Y L + + A ++PT I +P + +
Sbjct: 750 GKFPSDAFYDKQLKNGTPRA---------MRPTPIG---FNWPQPNVPICYIPTHPTNAM 797
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRERL-------- 581
+ + S+ N EAE+V+ ++ + A + P I + +PY AQV+ LR+ +
Sbjct: 798 ENNDSNSYSNRAEAELVLAYLRGFLSAQELRPKDIGIVTPYAAQVRLLRQMIRRAGIQTG 857
Query: 582 -DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
D G+EV+++D FQGRE + +I+S VR+NT ++GF+ D RR NV +TRA + +
Sbjct: 858 VDRNTGECGIEVSSVDGFQGREKELMIVSTVRANTNRSLGFVSDPRRCNVTLTRARRGLV 917
Query: 641 VVCDSSTI 648
V+ +T+
Sbjct: 918 VIGHENTL 925
>gi|342319237|gb|EGU11187.1| DNA replication helicase Dna2, putative [Rhodotorula glutinis ATCC
204091]
Length = 1334
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 142/463 (30%), Positives = 220/463 (47%), Gaps = 56/463 (12%)
Query: 224 EVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVL 283
E+K G+ DD Q++A+A L + LI+ G PGTGKT EII Q G+ +L
Sbjct: 873 EIKQAGLPSHLNDD-QRQAVAKVLTAQDYALIL-GMPGTGKTTTTAEIIKALAQAGKSIL 930
Query: 284 VTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKK 343
+T+ T++AVDN++ K+ D GL+I+R+GN ++ P++ +L ++
Sbjct: 931 LTSYTHSAVDNILLKVKDAGLSILRLGNRDKVLPSLHPYTLSS----------EDYAHSL 980
Query: 344 SDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPL 403
SD+ L + + GI + + K + V V ++QV L T G
Sbjct: 981 SDIDNKLLRPQIVATTCLGINE-------PIFVKRRFDVCIVDEASQVTLPTCLGP---- 1029
Query: 404 IRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQ 463
+R D+F +L GD QL P++ + A +GG+ VSL +R + H + LT Q
Sbjct: 1030 LRFADSF-------VLVGDHNQLPPLVRNGAARKGGLDVSLFKRLSDAHPNAV-VNLTHQ 1081
Query: 464 YRMNDAIASWASKEMYGGSL-ISSSTVASHL------LVDTPFVKPTWITQCP---LLLL 513
YRMN I S +++ +Y G L + V L ++ W P ++ +
Sbjct: 1082 YRMNSDIMSLSNELVYSGQLKVGDERVGGRKLGVRKDLAESVVESWVWDIIDPDRSVIFV 1141
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFY-NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVA 572
DT +L E + GS N EA +V V +L +GV I V S Y
Sbjct: 1142 DTD------ALPARERRN----GSLIDNLSEAVLVTKTVSALAGSGVDEEEIGVISLYRQ 1191
Query: 573 QVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVA 631
Q++ L +L P GVE+ T D QGR+ + +++S+VRSNT G G L D RR+NV
Sbjct: 1192 QIKLLSRQLSSHP---GVEILTADRSQGRDKECIVLSLVRSNTSGNAGDLLKDWRRINVC 1248
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGS 674
+TRA + + STI H +A +R + G V G+
Sbjct: 1249 LTRAKSKLVIFGSRSTISHVQLMADFVRLVEAKGWVYELPAGA 1291
>gi|190346052|gb|EDK38051.2| hypothetical protein PGUG_02149 [Meyerozyma guilliermondii ATCC 6260]
Length = 1359
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 149/540 (27%), Positives = 240/540 (44%), Gaps = 111/540 (20%)
Query: 226 KLDGIMGK-TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV-------- 276
KL+ +M ++SQ AI + + + +IQGPPGTGKT + I+ +
Sbjct: 674 KLNDVMNNYKVNESQANAI-ISTHNRSGFSLIQGPPGTGKTKTILGIVGYNLSQDVPSGL 732
Query: 277 -----QQGE-----RVLVTAPTNAAVDNMVEKLSDVGLN---------IVRVGNPARISP 317
QQG+ ++LV AP+NAAVD +V +L D N +VR+G ++
Sbjct: 733 IEVDGQQGKPQTSSKILVCAPSNAAVDELVVRLRDGVFNFKGERITPSVVRLGRSDAVNS 792
Query: 318 AVASKSLGEIVKSKLASFVAEFER---------KKSDLRKDLRQCLKDDSLA-------- 360
AV +L E+V +L + V R K R LRQ L+ +L+
Sbjct: 793 AVRDLTLEELVDKQLQTTVQHVARDPEVRAEHTKLVKERDSLRQSLQSTTLSDEEFTQME 852
Query: 361 AGIRQLLKQLGKTLKK-----------------KEKETVKEVLSSAQVVLATNTGAADPL 403
+ +R++ K+ + KK + ++ ++L+++Q++ +T +G+A
Sbjct: 853 SRLREVNKKRNELAKKLDEQRENAAVAYRSRELERRQLQAKILNTSQIICSTLSGSAHDF 912
Query: 404 IRRLD-TFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGV 442
+ L TF+ V +CI+ GD QL P +LS+ A
Sbjct: 913 LASLGITFEKVIIDEACQCVELSAIIPLRYGCTKCIMVGDPKQLPPTVLSQTAASLNYDK 972
Query: 443 SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
SL R A L QYRM+ I+ + S E Y L A L +T +P
Sbjct: 973 SLFVRMQEQFPDS-AYLLDVQYRMHPDISRFPSAEFYRSRLHDG---AGMLEKNT---RP 1025
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIV---VHHVFSLICAGV 559
W ++ P PY + +H + S YN EA++V V H+ ++
Sbjct: 1026 -WHSEVPFS------PYRFFDI-VGKHQQHESSRSLYNRAEAQVVLEMVDHLMYMLPPKE 1077
Query: 560 SPSAIAVQSPYVAQVQHLRERLDDLPEAAG------VEVATIDSFQGREADAVIISMVRS 613
I V SPY Q++ L+ D + G V+ T+D +QG+E + +I+S VR+
Sbjct: 1078 FRGRIGVISPYKEQIRTLK---DIFAKKYGRQIWNEVDFNTVDGYQGQEKEIIIMSCVRA 1134
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPG 673
+ G VGFL D RRMNVA+TRA + ++ + ++ N +RLL+ G V A+PG
Sbjct: 1135 SETGNVGFLSDVRRMNVALTRARTTLWILGNQKSLMRNKVWSRLLQDASDRGLVSKAQPG 1194
>gi|268565329|ref|XP_002639410.1| Hypothetical protein CBG03999 [Caenorhabditis briggsae]
Length = 741
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 139/504 (27%), Positives = 230/504 (45%), Gaps = 62/504 (12%)
Query: 214 LEENDLADWSEV---KLDGIMGKTF-----DDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
L+ D+ D +V KL + K F + SQ AI + +N+ RPL+ IQGPPGTGK+
Sbjct: 226 LQVQDILDNHQVEAEKLRKLTDKGFPPMNLNPSQLLAIRMAMNEDRPLVCIQGPPGTGKS 285
Query: 266 GLLKEIIARAVQQGERVLVTAPTNAAVDN---MVEKLSDVGLNIVRVGNPARISPAVASK 322
L ++ R ++ ++ +V PT A+ N M EKL +V A + K
Sbjct: 286 HTLSYLLFRIMRSKKQAVVLTPTREALKNLKQMTEKLLKEREQEFQVHEHALMDIKTYHK 345
Query: 323 SLGEIVKSKLASFVAEFERKKSDLRKDLRQC-LKDDSLAAGIRQLLKQLGKTLKKKEKET 381
+ ++K A E+ +S +R+D + + + + R+L K + E
Sbjct: 346 LIDASDEAKSA-----IEQIRS-IREDAQMGEIAHEDYSESSRRLEKAVC-------SEV 392
Query: 382 VKEVLSSAQVVLATNTGAADPLIRRLDTFD---------------------LVGKRCILA 420
+E+L + +VV +T + + ++ +F L K+ +LA
Sbjct: 393 GREILKNVRVVFSTIESSFVTEVMKVQSFQPAMCLVDEAAQVMECQTWPAVLKMKKLVLA 452
Query: 421 GDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYG 480
GD QL ++ ++ + + S++ER E L TQYR ++ I W++ Y
Sbjct: 453 GDPKQLPALVKTKLGRDLKLNQSVMERLMLKKENYSWVMLNTQYRSHEEITHWSNSCFYD 512
Query: 481 GSLISSSTVASHLLVDTPFVKPTWI-TQCPLLLLDTR--LPYGSLSLGCEEHLDLAGTG- 536
L SST LVD KP++ P++ +DT +L E+ + L G
Sbjct: 513 CHL-KSSTKDEKKLVDELNPKPSFTGLYEPMVHIDTSGVKTDPERALTYEQRVTLVTDGE 571
Query: 537 ---SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAA----- 588
S+ N GEA + H +L+ GV P IA+ SPY Q++ L +D+ + +
Sbjct: 572 KEYSYSNIGEATYAMQHYKNLLDMGVKPENIALISPYRGQIELLGRMIDEYCKTSNNMDC 631
Query: 589 -GVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSST 647
++ T+DS QG+E D VI + VR+N GF+ D RR+NV +TRA +H ++
Sbjct: 632 KNTKIGTVDSVQGQEYDVVIFTSVRNNPKKNFGFVSDVRRLNVVVTRAKRHFVLIGSGYM 691
Query: 648 ICHNTF--LARLLRHIRYFGRVKH 669
HN + RL IR + + H
Sbjct: 692 FKHNHISEVRRLFDTIRNWNQRFH 715
>gi|339252438|ref|XP_003371442.1| hypothetical protein Tsp_11650 [Trichinella spiralis]
gi|316968330|gb|EFV52623.1| hypothetical protein Tsp_11650 [Trichinella spiralis]
Length = 650
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 124/437 (28%), Positives = 199/437 (45%), Gaps = 53/437 (12%)
Query: 251 RPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
R + +IQGPPGTGKT I+ A +G +LV +P+N A+D + EK+S GL ++R
Sbjct: 188 RSISLIQGPPGTGKTVTSASIVYHLAKARGTPILVCSPSNVAIDQLAEKISRTGLRVIRT 247
Query: 310 GNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+R E + S + + ++ +++L + L+ + + +
Sbjct: 248 CAKSR-----------EKIDSPVGFLTLHQQVRRLVEKEELGKLLQVKEETGELSPVEEN 296
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
+LK K + +E+L A V+ T A D + + ++
Sbjct: 297 RFSSLKLKYE---RELLKKADVICCTCVAAGDSRLAAIKFRAVLIDESTQAKEPECLIPI 353
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
++ +L GD CQL PV++ +A G+ SL ER L G +L QYRM+ +
Sbjct: 354 VTGARQVVLVGDHCQLGPVVICEEAARAGLNRSLFERLVIL--GNQPIRLQVQYRMHPLL 411
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ S Y G+L + T +L F P P+ + +LS +E
Sbjct: 412 SLLPSNLFYEGTLQNGVTEQERILEAGDFRWPN--PTVPMFF------WCTLS---QEEK 460
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL-RERLDDLPE--- 586
+G SF N EA + + +GV I + +PY AQ H+ + L P
Sbjct: 461 PRSGK-SFLNRAEAAHIEKIATKFLRSGVRADQIGIITPYEAQRAHIVKHMLHSGPLNNK 519
Query: 587 -AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
+EVA++D+FQGRE D +++S VRSN +GFL DSRR+NVA+TRA + +V +
Sbjct: 520 LYQEIEVASVDAFQGREKDIILLSCVRSNKDNKIGFLNDSRRLNVALTRARYGLIIVGNP 579
Query: 646 STICHNTFLARLLRHIR 662
+ H LLR R
Sbjct: 580 KVLSHQPMWNSLLRFCR 596
>gi|241953325|ref|XP_002419384.1| helicase, putative; tRNA-splicing endonuclease positive effector,
putative [Candida dubliniensis CD36]
gi|223642724|emb|CAX42978.1| helicase, putative [Candida dubliniensis CD36]
Length = 2009
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 153/535 (28%), Positives = 235/535 (43%), Gaps = 108/535 (20%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE--------------- 280
+DSQ +AI +G K +IQGPPGTGKT + I+ ++ Q +
Sbjct: 1299 NDSQARAI-MGTFKSEGFSLIQGPPGTGKTKTILGIVGYSLSQEKNKKVIDISESGSSPA 1357
Query: 281 -----RVLVTAPTNAAVDNMVEKLSD---------VGLNIVRVGNPARISPAVASKSLGE 326
++L+ AP+NAAVD +V +L D + L +VR+G I+ +V +L E
Sbjct: 1358 PSDKAKILICAPSNAAVDELVLRLRDGVRNSSGEHMPLKVVRLGRSDAINSSVRDLTLEE 1417
Query: 327 IVKSKLASFVAE--------FERKKS-DLRKDLRQCLKDDSLA--------AGIRQLLKQ 369
+V +L + E E K + R +LR+ L +SL IR + K+
Sbjct: 1418 LVDKELQTKQTEVVIDPNIRLEHTKCINERDELRKRLATESLEDKDITELEEKIRAINKK 1477
Query: 370 LGKTLKK----KEKETV----KEV---------LSSAQVVLATNTGAADPLIRRLDT-FD 411
+ KK +EK ++ KE+ LS AQV+ +T +G+A L+ L FD
Sbjct: 1478 RSELAKKLDEQREKASIANRTKEINRRNIQARILSEAQVLCSTLSGSAHDLVANLSVQFD 1537
Query: 412 LV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
V ++CI+ GD QL P +LS+ A SL R
Sbjct: 1538 QVIIDEACQCLELSAIIPLRYGCRKCIMVGDPNQLPPTVLSQAAASYNYEQSLFVRMQKN 1597
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
H + L QYRM+ I+ + S E Y L + L ++T +P W PL
Sbjct: 1598 HPDSVYM-LDVQYRMHPMISKFPSSEFYNSKLKDGDNM---LELNT---RP-WHKDPPLT 1649
Query: 512 LLDTRLPYGSLS-LGCEEHLDLAGTGSFYNEGEAEIVVH---HVFSLICAGVSPSAIAVQ 567
PY LG E +L T S +N EA + + + +I + +
Sbjct: 1650 ------PYRFFDILGKHEKNEL--TRSLFNTDEAMVALQLTDKLMQIIPQDKFSGNVGII 1701
Query: 568 SPYVAQVQHLRE---RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
SPY Q++ ++E R P ++ T+D FQG+E + +I+S VR++ G VGFL D
Sbjct: 1702 SPYKEQIRKIKEVFVRKYGKPILDEIDFNTVDGFQGQEKEIIIMSCVRASATGNVGFLSD 1761
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSG 679
RRMNVA+TRA + ++ + ++ N +LL V A PG S
Sbjct: 1762 VRRMNVALTRAKTTLWILGNKESLSRNEVWRKLLTDADERKCVTQAYPGFLNSSN 1816
>gi|253742031|gb|EES98885.1| DNA helicase HCS1 [Giardia intestinalis ATCC 50581]
Length = 734
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 160/537 (29%), Positives = 240/537 (44%), Gaps = 79/537 (14%)
Query: 204 LFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTG 263
L G++E LE WS KLD + + Q++A+ ++ L +I GP GTG
Sbjct: 197 LLGERE----LEPLSSKQWSH-KLDIPASLSLNSKQREAVQC-MSAASFLSVIWGPAGTG 250
Query: 264 KTGLLKEIIARAVQQG--ERVLVTAPTNAAVDNMV-------EKLSDVGLNIVRVGNPAR 314
KT L +A + R+LV AP+N A DN++ KL+ +I+R+G+PAR
Sbjct: 251 KTTTLSAGVALCLLNNPQTRILVCAPSNTATDNLLLGICAALRKLNGKTDSILRLGSPAR 310
Query: 315 -----ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGI---RQL 366
I P + L S+L +F++ + ++ +R K + R
Sbjct: 311 ATSEAIYPFLFDSRLLTDYASELHGAKTDFQKAEQAYKR-IRTKTKTTGDKKALYEARSE 369
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL----DTFDLV--------- 413
+ +++ K VL++A++V T +G + L R + FDLV
Sbjct: 370 FYSARSNMIASQRDCGKRVLATARLVACTLSGTSTSLCLRAAESSNGFDLVLVDEASQAL 429
Query: 414 -----------GKRCILAGDQCQLAPVILSRKALEGG---------IGVSLLERAATLH- 452
+ +LAGD QL P +LS +A+ I SL+++A +
Sbjct: 430 DVSLLGAILLTKGKLVLAGDPNQLPPTVLSDRAMHSKTFSLPFINRITSSLVQKAEEVAP 489
Query: 453 EGVLATKLTT---QYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW----- 504
EGV + L QYR I + S E Y G L+ +V + L D F+ W
Sbjct: 490 EGVQMSPLVMLEQQYRFCQQICRFPSDEFYLGRLVPDDSVKNISLAD--FLGKDWFNCVD 547
Query: 505 ---ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV-FSLICAGVS 560
+++ P L L E L S N GEA+IVV V + + S
Sbjct: 548 DGTLSKNPTELFVDTCSMNLLEAREEGDQSLLPQLSILNYGEADIVVKLVDYFVSILSRS 607
Query: 561 P------SAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN 614
P +AI SPY AQV L R+D A G+E++T+D FQGRE + +IIS VRSN
Sbjct: 608 PKVDRPQAAIGCISPYAAQVSLLVGRMD-AHVAKGLEISTVDGFQGREKEIIIISFVRSN 666
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
G VGFL D RR+NV+ITRA + V +V +S T+ + L H+ G + E
Sbjct: 667 DEGDVGFLSDVRRLNVSITRAKRLVVIVGNSITLEKDPTLKAYCNHLMSNGVILFPE 723
>gi|327277984|ref|XP_003223743.1| PREDICTED: DNA2-like helicase-like [Anolis carolinensis]
Length = 1099
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 132/446 (29%), Positives = 206/446 (46%), Gaps = 54/446 (12%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + QK+A+ L K LI+ G PGTGKT + ++ G VL+T+ T+ AV
Sbjct: 643 KGLNKPQKQAMKQVLLSKDYTLIV-GMPGTGKTTTICALVRILYACGFSVLLTSFTHTAV 701
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN++ KL+ + +R+G ++ P + + EI KS VA+ E+
Sbjct: 702 DNILLKLARFKVGFLRLGRAQKVHPDIRKFTEEEICKSNCIKTVADLEKLYHSQPVVATT 761
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
C+ + T K+ + V E +Q + PL L
Sbjct: 762 CMGTNHPIF-----------TRKRFDFCIVDEASQISQPI------CLGPLFYSL----- 799
Query: 413 VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIAS 472
R +L GD QL P++ + +A + G+G SL +R V+ +LT QYRMN I S
Sbjct: 800 ---RFVLVGDHQQLPPLVQNAEARDLGMGESLFKRLEKNENAVV--QLTVQYRMNRKIMS 854
Query: 473 WASKEMYGGSLISSSTVASHLLVDTPFVK----------PTWITQC-----PLLLLDTRL 517
++K +Y G L S S S ++D P K TW+ + P+ L+T
Sbjct: 855 LSNKLVYDGKLESGSERISKAVIDLPKFKELKLEQQYPSKTWLKETLDPNNPVCFLNTE- 913
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
+ E ++ G N EA +V+ I AG PS I V SPY Q++ +
Sbjct: 914 -----KIPAPEQIEKHGVS---NMTEARLVLFLTSMFIKAGCRPSDIGVISPYRHQLKVI 965
Query: 578 RERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRAC 636
+ + + + VEV T+D +QGR+ +I+S VRSN+ G G L D RR+NVAITRA
Sbjct: 966 TDLMTS-SQISKVEVNTVDKYQGRDKSIIIVSFVRSNSDGKPGELLKDWRRLNVAITRAK 1024
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIR 662
+ ++ ++C L +LL H++
Sbjct: 1025 HKLVMLGCVPSLCQYIPLKKLLSHLK 1050
>gi|392567172|gb|EIW60347.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 788
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/261 (39%), Positives = 137/261 (52%), Gaps = 27/261 (10%)
Query: 420 AGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMY 479
AG Q L P + ++L ER ++ + LT QYRM+ IA++ SK MY
Sbjct: 542 AGSQAVLRP--------PSTLEMTLFERLEKMYGPGIKRMLTVQYRMHKQIATFPSKIMY 593
Query: 480 GGSLISSSTVASHLLVDTPFVKP------TWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
L S +VASHLL D P K I P + DT GCE +
Sbjct: 594 HSKLTSHPSVASHLLRDLPNTKADSEEDEKEILGTPAVFYDT--------AGCEYFERVE 645
Query: 534 G---TGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGV 590
G GS NE EA +V + L+ AGV PS IAV +PY AQV L L + A +
Sbjct: 646 GDGDEGSRCNENEASVVKMWLDQLVGAGVQPSQIAVITPYQAQVTLLTSLLRPI-FGAEL 704
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
E+ T+D QGRE +A++IS+VRSN VGFL D RR+NVA+TRA +H+ VV DSST+ H
Sbjct: 705 EIGTVDGMQGREKEAIVISLVRSNEKREVGFLKDKRRLNVAMTRARRHLCVVGDSSTVQH 764
Query: 651 NT-FLARLLRHIRYFGRVKHA 670
+ FL + + + V++A
Sbjct: 765 GSPFLKKWMAWLDANADVRYA 785
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 134/498 (26%), Positives = 206/498 (41%), Gaps = 116/498 (23%)
Query: 10 QSRLDEFTQRMSELLRIERDAELEFTQEEL-NAVPTPDENSDSSKPIEFLVSHGRAPQEL 68
+ +L+ F R ELL+ ER+AE+E T L N P + L G A
Sbjct: 4 EEQLNAFIARHRELLKREREAEIERTSLLLSNCAP------------KLLEQKGLA---- 47
Query: 69 CDTICNLFVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLSPGDMVCV----------R 114
+C L S GLGG LV L R H PP +L PGD+ + +
Sbjct: 48 ---LCGLGTTSVGIGLGGKTLVELERPTAYHSTPIFPPHSLRPGDLARIEEHTTSAASKK 104
Query: 115 VCDSRGACATS-----CIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRID---R 166
+ A AT ++G ++ + + I+V DP + G+ + I R
Sbjct: 105 TAKPKKAGATDKPKDDGVEGVIYKVSDTKIVIAV-------DPPETS--GEDLNIPERCR 155
Query: 167 IQGLADTLTYERNCEALMLLQK----NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADW 222
+ LA+++TY+R +AL L+K N K + + + L +T E
Sbjct: 156 VVKLANSVTYDRMDKALDQLEKLVLPNSDAKEDKFLPKMTNLIRVLMGMTAPSER----- 210
Query: 223 SEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-- 280
VK K+ + SQ++AI L + I GPPGTGKT L E+I
Sbjct: 211 VPVKDLTFFDKSLNSSQQEAIRFALGSPE-VACIHGPPGTGKTHTLIELIRHFTSATPSN 269
Query: 281 ----RVLVTAPTNAAVDNMVEKL-------SDVGLNIVRVGNPARISP----------AV 319
R+LV +N +VDN++E+L L + R+G+PAR+
Sbjct: 270 PKPLRLLVCGASNMSVDNILERLLALPAPEGGAKLKVTRIGHPARVMAHENVIEATLEVQ 329
Query: 320 ASKS----LGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLK 375
AS+S L + VK++L + + K + + L+ + +R L K+ +
Sbjct: 330 ASRSDEAALAKDVKNELETALGVLSGKGKGTKGKGPRGLERKKMWDDVRALRKE----YR 385
Query: 376 KKEKETVKEVLSSAQVVLATNTGAADPLIRRL--DTFDLV-------------------G 414
++E V+ VL AQVVLAT + R+L FD+V
Sbjct: 386 QREGGVVRSVLKDAQVVLATCHSSGG---RQLWNQNFDVVIIDEATQALEAVCWVPIFKA 442
Query: 415 KRCILAGDQCQLAPVILS 432
++ ILAGD QL P I+S
Sbjct: 443 QKLILAGDPMQLPPTIIS 460
>gi|390605116|gb|EIN14507.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 778
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/250 (38%), Positives = 138/250 (55%), Gaps = 23/250 (9%)
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVAS 491
S K+LE V+L +R ++ + L QYRM+ I ++ SK +Y LI TVA+
Sbjct: 541 SPKSLE----VTLFDRLEKMYGSNIKRMLRIQYRMHAHINAFPSKTLYSNKLIPHPTVAN 596
Query: 492 HLLVDTPFVKPTW------ITQCPLLLLDTRLPYGSLSLGCEEHLDLAG---TGSFYNEG 542
HLL D P + + + P++ DT GCE H G GS NE
Sbjct: 597 HLLRDLPNIATSENDLDLDALETPVVFFDT--------AGCEYHERTDGDGDEGSKCNEN 648
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGRE 602
EA +V H V +L+ AG+ P IA+ +PY AQVQ L L + +E+ +ID QGRE
Sbjct: 649 EASVVKHWVETLVGAGILPDQIAIVTPYQAQVQLLTSVLRPT-FGSDLEIGSIDGMQGRE 707
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH-NTFLARLLRHI 661
+AVII++VRSN+ VGFL + RR+NVA+TRA +H+ VV DSST+ H ++FL + +
Sbjct: 708 KEAVIITLVRSNSKREVGFLKEKRRLNVAMTRAKRHLCVVGDSSTVQHGSSFLKAWMSWL 767
Query: 662 RYFGRVKHAE 671
V++ E
Sbjct: 768 EENADVRYPE 777
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 110/431 (25%), Positives = 180/431 (41%), Gaps = 91/431 (21%)
Query: 72 ICNLFVVSTSTGLGGMHLVLFR----VEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
I L V S + GLGG LV + LPP TL PGD+ V + A+
Sbjct: 50 IGGLGVASLNIGLGGKTLVELERPTAYNASPLLPPHTLRPGDLARVEENVTGAGTASKFA 109
Query: 128 QGFVHNLGEDG-CTISVALESRHGDPTFSKLFGKSVRID-------RIQGLADTLTYERN 179
+G + D C + + + D S++ S D RI LA+++TY+R
Sbjct: 110 KGRKPSTAPDKECKSTEGVVYQVSD---SRIVIASDAEDVDLPERCRIVKLANSITYDRM 166
Query: 180 CEALMLLQKNGL-------HKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVK-LDGI- 230
+A+ +++ L + P V L G LA S ++ +D +
Sbjct: 167 DKAIDQMERVVLPSHGDKGYPSPPPNRLVQILLG------------LASPSPLRPIDHLT 214
Query: 231 -MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ------QGERVL 283
+ + +Q++A+ L + I GPPGTGKT L EII + + +R+L
Sbjct: 215 FFNEGLNSTQREAVKFVLQSPE-VACIHGPPGTGKTHTLIEIIRQLTSITAWNPRPQRLL 273
Query: 284 VTAPTNAAVDNMVEKL------SDV---GLNIVRVGNPARISPAVA-------------- 320
V +N +VDN++E+L SD + + RVG+PAR+
Sbjct: 274 VCGASNLSVDNILERLLALPPPSDPKQGKIKVTRVGHPARVMAKEGVLEATLEVQAGRSD 333
Query: 321 SKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKE 380
+L + VK++L + + K + + L+ + +R L K+ +K+E
Sbjct: 334 QAALAKDVKNELEATLDSLNGKGKGAKAKRPRGLERKKMWDDVRALRKE----YRKREGG 389
Query: 381 TVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCILAG 421
V+ VL +++VVLAT + + D FD+V ++ ILAG
Sbjct: 390 VVESVLKASEVVLATCFTSGGRQLFNQD-FDVVIIDEATQAMEAVCWIPVFKAEKLILAG 448
Query: 422 DQCQLAPVILS 432
D QL P +LS
Sbjct: 449 DPMQLPPTVLS 459
>gi|294643874|ref|ZP_06721665.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
gi|292640780|gb|EFF59007.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
Length = 398
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 127/420 (30%), Positives = 198/420 (47%), Gaps = 66/420 (15%)
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE 340
+VLV A +N AVD + EKL D G+ ++R+GNP R++ K L + + S A E
Sbjct: 4 QVLVCAQSNTAVDWICEKLVDRGVPVLRIGNPTRVN----DKMLSSTYERRFESHPAYPE 59
Query: 341 RKKSDLRKDLRQC---LKDDSLAA--GIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT 395
+RK +R+ ++ S + G+R + +L + E + ++ SA+V+ +T
Sbjct: 60 --LWGIRKSIREMGSRMRRGSYSEREGMRNRMSRLRDRATELEIQINADLFDSARVIAST 117
Query: 396 NTGAADPLI--RRLDTFDL----------------VGKRCILAGDQCQLAPVILSRKALE 437
+ L+ RR T + R ILAGD CQL P I +A
Sbjct: 118 LVSSNHRLLNGRRFPTLFIDEAAQALEAACWIAIRKADRVILAGDHCQLPPTIKCIEASR 177
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASH--LLV 495
GG+ +L+E+ ++ L QYRM++ I + S Y G L ++ V L
Sbjct: 178 GGLDHTLMEKVVQQKPSAVSL-LKVQYRMHETIMQFPSDWFYHGELEAAPEVRYRGILDF 236
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF--YNEGEAEIVVHHVFS 553
DTP WI + + H D G SF N+ EA +++ + +
Sbjct: 237 DTPM---NWIDTSEM----------------DFHEDFVGE-SFGRINKQEANLLLQELET 276
Query: 554 LICAGVSPSAI-------AVQSPYVAQVQHLRERLDD----LPEAAGVEVATIDSFQGRE 602
I + I + SPY AQVQ+LR ++ P + + V T+D FQG+E
Sbjct: 277 YI-ERIGKERILDERIDFGLISPYKAQVQYLRGKIKGSSFLRPFRSLITVNTVDGFQGQE 335
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D + IS+VR+N G +GFL D RRMNVAITRA + ++ D+ST+ + F RL+ I+
Sbjct: 336 RDVIFISLVRANEDGQIGFLNDLRRMNVAITRARMKLVILGDTSTLAKHPFYKRLMLFIK 395
>gi|146421053|ref|XP_001486478.1| hypothetical protein PGUG_02149 [Meyerozyma guilliermondii ATCC 6260]
Length = 1359
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 149/540 (27%), Positives = 238/540 (44%), Gaps = 111/540 (20%)
Query: 226 KLDGIMGK-TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV-------- 276
KL+ +M ++SQ AI + + + +IQGPPGTGKT + I+ +
Sbjct: 674 KLNDVMNNYKVNESQANAI-ISTHNRSGFSLIQGPPGTGKTKTILGIVGYNLSQDVPLGL 732
Query: 277 -----QQGE-----RVLVTAPTNAAVDNMVEKLSDVGLN---------IVRVGNPARISP 317
QQG+ ++LV AP+NAAVD +V +L D N +VR+G ++
Sbjct: 733 IEVDGQQGKPQTSSKILVCAPSNAAVDELVVRLRDGVFNFKGERITPSVVRLGRSDAVNS 792
Query: 318 AVASKSLGEIVKSKLASFVAEFER---------KKSDLRKDLRQCLKDDSL--------A 360
AV +L E+V +L + V R K R LRQ L+ +L
Sbjct: 793 AVRDLTLEELVDKQLQTTVQHVARDPEVRAEHTKLVKERDSLRQSLQSTTLLDEEFTQME 852
Query: 361 AGIRQLLKQLGKTLKK-----------------KEKETVKEVLSSAQVVLATNTGAADPL 403
+R++ K+ + KK + ++ ++L+++Q++ +T +G+A
Sbjct: 853 LRLREVNKKRNELAKKLDEQRENAAVAYRSRELERRQLQAKILNTSQIICSTLSGSAHDF 912
Query: 404 IRRLD-TFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGV 442
+ L TF+ V +CI+ GD QL P +LS+ A
Sbjct: 913 LASLGITFEKVIIDEACQCVELSAIIPLRYGCTKCIMVGDPKQLPPTVLSQTAASLNYDK 972
Query: 443 SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
SL R A L QYRM+ I+ + S E Y L A L +T +P
Sbjct: 973 SLFVRMQEQFPDS-AYLLDVQYRMHPDISRFPSAEFYRSRLHDG---AGMLEKNT---RP 1025
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIV---VHHVFSLICAGV 559
W ++ P PY + +H + S YN EA++V V H+ ++
Sbjct: 1026 -WHSEVPFS------PYRFFDI-VGKHQQHESSRSLYNRAEAQVVLEMVDHLMYMLPPKE 1077
Query: 560 SPSAIAVQSPYVAQVQHLRERLDDLPEAAG------VEVATIDSFQGREADAVIISMVRS 613
I V SPY Q++ L+ D + G V+ T+D +QG+E + +I+S VR+
Sbjct: 1078 FRGRIGVISPYKEQIRTLK---DIFAKKYGRQIWNEVDFNTVDGYQGQEKEIIIMSCVRA 1134
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPG 673
+ G VGFL D RRMNVA+TRA + ++ + ++ N +RLL+ G V A+PG
Sbjct: 1135 SETGNVGFLSDVRRMNVALTRARTTLWILGNQKSLMRNKVWSRLLQDASDRGLVSKAQPG 1194
>gi|68465577|ref|XP_723150.1| potential nuclear RNA processing factor [Candida albicans SC5314]
gi|68465870|ref|XP_723003.1| potential nuclear RNA processing factor [Candida albicans SC5314]
gi|46445015|gb|EAL04286.1| potential nuclear RNA processing factor [Candida albicans SC5314]
gi|46445171|gb|EAL04441.1| potential nuclear RNA processing factor [Candida albicans SC5314]
Length = 2018
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 153/535 (28%), Positives = 235/535 (43%), Gaps = 108/535 (20%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE--------------- 280
+DSQ +AI +G K +IQGPPGTGKT + I+ ++ Q +
Sbjct: 1298 NDSQARAI-MGTFKSEGFSLIQGPPGTGKTKTILGIVGYSLSQEKNNKVIDISGSGSSPT 1356
Query: 281 -----RVLVTAPTNAAVDNMVEKLSD---------VGLNIVRVGNPARISPAVASKSLGE 326
++L+ AP+NAAVD +V +L D + L +VR+G I+ +V +L E
Sbjct: 1357 PSDKAKILICAPSNAAVDELVLRLRDGVRNSSGEHMPLKVVRLGRSDAINSSVRDLTLEE 1416
Query: 327 IVKSKLASFVAE--------FERKKS-DLRKDLRQCLKDDSLAA-----------GIRQL 366
+V +L + E E K + R +LR+ L +SL I +
Sbjct: 1417 LVDKELQTKQTEVVIDPNIRLEHTKCINERDELRKRLATESLEEKEITELEEKIRAINKK 1476
Query: 367 LKQLGKTL-KKKEKETV----KEV---------LSSAQVVLATNTGAADPLIRRLDT-FD 411
+L K L +++EK ++ KE+ LS AQV+ +T +G+A L+ L FD
Sbjct: 1477 RSELAKKLDEQREKASIANRTKEINRRNIQARILSEAQVLCSTLSGSAHDLVANLSVQFD 1536
Query: 412 LV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
V K+CI+ GD QL P +LS+ A SL R
Sbjct: 1537 QVIIDEACQCLELSAIIPLRYGCKKCIMVGDPNQLPPTVLSQAAASYNYEQSLFVRMQKN 1596
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
H + L QYRM+ I+ + S E Y L + L ++T +P W PL
Sbjct: 1597 HPDSVYM-LDVQYRMHPMISKFPSSEFYNSKLKDGDGM---LELNT---RP-WHKDPPLT 1648
Query: 512 LLDTRLPYGSLS-LGCEEHLDLAGTGSFYNEGEAEIVVH---HVFSLICAGVSPSAIAVQ 567
PY LG E +L T S +N EA + + + L+ I +
Sbjct: 1649 ------PYRFFDILGKHEKNEL--TRSLFNTDEAIVALQLTDKLMQLLPQDKFSGKIGII 1700
Query: 568 SPYVAQVQHLRE---RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
SPY Q++ ++E R P ++ T+D FQG+E + +I+S VR++ G VGFL D
Sbjct: 1701 SPYKEQIRKIKEVFVRKYGKPILDEIDFNTVDGFQGQEKEIIIMSCVRASATGNVGFLSD 1760
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSG 679
RRMNVA+TRA + ++ + ++ N +LL + A PG S
Sbjct: 1761 VRRMNVALTRAKTTLWILGNKDSLSRNEVWKKLLTDAGERNCITQAYPGFLNPSN 1815
>gi|255082057|ref|XP_002508247.1| predicted protein [Micromonas sp. RCC299]
gi|226523523|gb|ACO69505.1| predicted protein [Micromonas sp. RCC299]
Length = 1188
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 137/450 (30%), Positives = 204/450 (45%), Gaps = 92/450 (20%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L ++ + +IQGPPGTGKT ++ ++ + +L T+ +N AVD
Sbjct: 653 MNKSQTDALEAALFQR--VTLIQGPPGTGKTHTAVALVQMWLRNRTSPILCTSDSNIAVD 710
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N+V+ LS G+ + R+G P E V+ L F+ E
Sbjct: 711 NLVDGLSRAGVRVARIGRP-------------EAVRQDLMQFMVES-------------- 743
Query: 354 LKDDSLAAGIRQLLKQLGKTLKKKEK-ETVKEVLSSAQVVLATNTGAADPLIRRLD---- 408
AGI + G + K ++ + + VL A+VV AT GA ++ R
Sbjct: 744 ------IAGI-----EPGSNMSKDQQYQAINGVLRRAEVVCATCAGAGSDILERFSFQAC 792
Query: 409 ------------TFDLVGKRC---ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
T + K C +L GDQ QL P I+SR+A G+G SL ER L
Sbjct: 793 LIDEATQATEPATVVPLTKGCSQVVLIGDQKQLPPTIISREADAAGLGTSLFER--MLAR 850
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLL 513
G+ A L QYRM+ AIA++ SK Y G+L+ S T S F P + PL +
Sbjct: 851 GIRAFMLKVQYRMHPAIAAYPSKAFYSGALL-SGTPPSARRAPMGFDWP--VPAVPLAFV 907
Query: 514 DTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA-GVSPSAIAVQSPYVA 572
D +P G + + S N EA+ VV+ V L V I + +PY A
Sbjct: 908 D--VPDG---------YERSDGSSQTNPVEAQKVVNIVKKLAAGHDVIFGEIGIVTPYSA 956
Query: 573 QVQ-----------HLRERLD---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA 618
QV+ +R R D D +EV ++D FQGRE + ++ R+N G
Sbjct: 957 QVRAIKRLLNGNKPEVRSRFDAPADPNTLQALEVCSVDGFQGREKEVIVFCCTRANPNGN 1016
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
VGFL D RR+NV +TRA + + ++ + T+
Sbjct: 1017 VGFLADPRRVNVMLTRARRGLIIIGNLGTL 1046
>gi|149241697|ref|XP_001526342.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450465|gb|EDK44721.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 2053
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 146/537 (27%), Positives = 231/537 (43%), Gaps = 112/537 (20%)
Query: 231 MGKTFDDSQKKAIAL-GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE--------- 280
M K +D ++ +A A+ G + +IQGPPGTGKT + I+ A+ E
Sbjct: 1344 MYKIYDVNKSQARAIKGTYESDGFFLIQGPPGTGKTKTILGIVGYALSHKESDKIIELPQ 1403
Query: 281 ----------RVLVTAPTNAAVDNMVEKLSD---------VGLNIVRVGNPARISPAVAS 321
++L+ AP+NAAVD +V +L + + L +VR+G I+ AV
Sbjct: 1404 KPAAKPSKGGKILICAPSNAAVDELVLRLRNGVKNSKGEHMDLKVVRLGRSDAINAAVRD 1463
Query: 322 KSLGEIVKSKLAS------------------FVAEFERKKSDLRKDLRQCLKDDSLAAGI 363
+L E+V +L S V E ++ K+ L + + D L +
Sbjct: 1464 LTLEELVDKELQSKQQEDVIIDPGIRAEHTKKVKERDQIKTRLSTESLSSKEIDKLETRL 1523
Query: 364 RQLLKQ---LGKTL-KKKEKETV-------------KEVLSSAQVVLATNTGAADPLIRR 406
R++ K+ L K L +++E+ ++ ++L AQV+ AT +G+A LI
Sbjct: 1524 REVNKERSDLAKKLDEQRERASIAYRSREIGRRTIQTKILDDAQVLCATLSGSAHELISS 1583
Query: 407 LDT-FDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
L FD V ++CI+ GD QL P +LS+ A SL
Sbjct: 1584 LSVKFDQVIIDEACQCLELSAIIPLRYGCRKCIMVGDPNQLPPTVLSQAASSFNYEQSLF 1643
Query: 446 ERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI 505
R T + + L QYRM+ I+ + S E Y L + K W
Sbjct: 1644 VRMQTNYPDSVYL-LNVQYRMHPQISQFPSAEFYQSKLKDGPNMEEK-------NKRPWH 1695
Query: 506 TQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEI---VVHHVFSLICAGVSPS 562
+ PL PY + H T S +N EA I +V + +LI
Sbjct: 1696 SIKPL------SPYRFFDIAS-RHTKNELTRSLFNLEEARICLQLVQKLITLIPQQAFAG 1748
Query: 563 AIAVQSPYVAQVQHLRERLDDLPEAAG------VEVATIDSFQGREADAVIISMVRSNTL 616
+ + SPY Q++ ++ D G ++ T+D FQG+E + +I+S VR++
Sbjct: 1749 KVGIISPYKEQIRTIK---DVFVREYGKIILNEIDFNTVDGFQGQEKEIIIMSCVRASAD 1805
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPG 673
G VGFL D RRMNVA+TRA + ++ + ++ N RLL+ V +A PG
Sbjct: 1806 GNVGFLSDVRRMNVALTRARTTLWILGNRESLLRNKVWNRLLKDAEQRNAVTNASPG 1862
>gi|307104875|gb|EFN53127.1| hypothetical protein CHLNCDRAFT_137486 [Chlorella variabilis]
Length = 949
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 134/405 (33%), Positives = 199/405 (49%), Gaps = 73/405 (18%)
Query: 261 GTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVA 320
G+ T + +A+ + QG+ VLV+AP+N AVD++ E+ S GL +VR+ +R
Sbjct: 380 GSAPTDVTTGFLAK-MGQGQ-VLVSAPSNIAVDHLAERTSQTGLRVVRLQARSR------ 431
Query: 321 SKSLGEIVKSKLASFVAEFERKKSDL--RKDLRQC--LKDD--SLAAGIRQLLKQLGKTL 374
E V + + ++ + D+ ++LR+ LK++ LAA + K L ++L
Sbjct: 432 -----EAVATTVEHLTLHYQVEHLDIPEAQELRKLRLLKEELGELAAADERKYKALKRSL 486
Query: 375 KKKEKETVKEVLSSAQVVLATNTGAADPLI-----RRL------------DTFDLV--GK 415
++ E+L +A VV AT G D + RRL LV K
Sbjct: 487 ER-------EILQAADVVCATCAGVGDSRLTNFRFRRLLIDEATQAVEPEAMIPLVMGAK 539
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
+ IL GD CQL PVI+++ A G+ SL ER L GV +L A+ + S
Sbjct: 540 QLILVGDHCQLGPVIINKVAARAGLSQSLFERLMLL--GVKPIRL--------AVHEFPS 589
Query: 476 KEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGT 535
Y G+L + TVA + F W T P + + LG EE + +GT
Sbjct: 590 NTFYEGALQNGVTVAERTRTNVLF---PWPTDKPCMFY--------VQLGAEE-ISASGT 637
Query: 536 GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL---RERLDDLPEA--AGV 590
S+ N EA V V L+ +GVSP+ I + +PY Q H+ R + +A A +
Sbjct: 638 -SYLNRTEAASVEKIVTYLLKSGVSPAQIGIITPYEGQRAHVVTVMTRSGPMRQALYAEI 696
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635
E A++DSFQGRE D +I+S VRSN +GFL D RR+NVA+TRA
Sbjct: 697 ECASVDSFQGREKDYIILSCVRSNEHQGIGFLADPRRLNVALTRA 741
>gi|238880881|gb|EEQ44519.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 2018
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 153/535 (28%), Positives = 235/535 (43%), Gaps = 108/535 (20%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE--------------- 280
+DSQ +AI +G K +IQGPPGTGKT + I+ ++ Q +
Sbjct: 1298 NDSQARAI-MGTFKSEGFSLIQGPPGTGKTKTILGIVGYSLSQEKNNKVIDISGSGSSPT 1356
Query: 281 -----RVLVTAPTNAAVDNMVEKLSD---------VGLNIVRVGNPARISPAVASKSLGE 326
++L+ AP+NAAVD +V +L D + L +VR+G I+ +V +L E
Sbjct: 1357 PSDKAKILICAPSNAAVDELVLRLRDGVRNSSGEHMPLKVVRLGRSDAINSSVRDLTLEE 1416
Query: 327 IVKSKLASFVAE--------FERKKS-DLRKDLRQCLKDDSLAA-----------GIRQL 366
+V +L + E E K + R +LR+ L +SL I +
Sbjct: 1417 LVDKELQTKQTEVVIDPNIRLEHTKCINERDELRKRLATESLEEKEITELEEKIRAINKK 1476
Query: 367 LKQLGKTL-KKKEKETV----KEV---------LSSAQVVLATNTGAADPLIRRLDT-FD 411
+L K L +++EK ++ KE+ LS AQV+ +T +G+A L+ L FD
Sbjct: 1477 RSELAKKLDEQREKASIANRTKEINRRNIQARILSEAQVLCSTLSGSAHDLVANLSVQFD 1536
Query: 412 LV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
V K+CI+ GD QL P +LS+ A SL R
Sbjct: 1537 QVIIDEACQCLELSAIIPLRYGCKKCIMVGDPNQLPPTVLSQAAASYNYEQSLFVRMQKN 1596
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
H + L QYRM+ I+ + S E Y L + L ++T +P W PL
Sbjct: 1597 HPDSVYM-LDVQYRMHPMISKFPSSEFYNSKLKDGDGM---LELNT---RP-WHKDPPLT 1648
Query: 512 LLDTRLPYGSLS-LGCEEHLDLAGTGSFYNEGEAEIVVH---HVFSLICAGVSPSAIAVQ 567
PY LG E +L T S +N EA + + + L+ I +
Sbjct: 1649 ------PYRFFDILGKHEKNEL--TRSLFNTDEAIVALQLTDKLMQLLPQDRFSGKIGII 1700
Query: 568 SPYVAQVQHLRE---RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
SPY Q++ ++E R P ++ T+D FQG+E + +I+S VR++ G VGFL D
Sbjct: 1701 SPYKEQIRKIKEVFVRKYGKPILDEIDFNTVDGFQGQEKEIIIMSCVRASATGNVGFLSD 1760
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSG 679
RRMNVA+TRA + ++ + ++ N +LL + A PG S
Sbjct: 1761 VRRMNVALTRAKTTLWILGNKDSLSRNEVWKKLLTDAGERNCITQAYPGFLNPSN 1815
>gi|297619674|ref|YP_003707779.1| DNA helicase [Methanococcus voltae A3]
gi|297378651|gb|ADI36806.1| DNA helicase [Methanococcus voltae A3]
Length = 732
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 143/534 (26%), Positives = 240/534 (44%), Gaps = 134/534 (25%)
Query: 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298
QK+A+ L L ++ GPPGTGKT + EII + ++G V+ TA +N AVDN++E
Sbjct: 211 QKEAVISALTS-NDLYLVHGPPGTGKTRTITEIIIQESKRGNSVIATADSNTAVDNILEN 269
Query: 299 LSDV------------------------------------GLNIVRVGNPARISPAVASK 322
L+ L IVR+G+P+RIS +
Sbjct: 270 LAKAPKIAKKLKITYDAKYNPKNNFKNNPKKDNIRKNGLEKLKIVRIGHPSRISKELIDY 329
Query: 323 SL-GEIVKSKLASFVA---EFERKKSDLRKDL-------RQCLKDDS--LAAGIRQLLK- 368
SL +I K +L + E ++ RKD+ R+ L +D L A ++Q ++
Sbjct: 330 SLHSKITKHELYIKIVKLRELLEREYLKRKDMPSPDPKFRRGLTNDDIVLYAKLKQRIRG 389
Query: 369 --------------------QLGKTLKKKEKETVKEVLSSAQVVLATNT----------- 397
++ + K EK+ + +++ ++ VVLATN+
Sbjct: 390 IPPQKIEEMALWVKCNEKIAKIKDKIVKTEKQIICDIIENSDVVLATNSMAGSEYLEDFE 449
Query: 398 ---GAADPLIRRLDTFDLVG----KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
G D + ++ L+ + I+AGD QL P +LS E + +L ER
Sbjct: 450 FNVGVIDECSQSMEPSTLITALKCDKIIMAGDHKQLPPTVLSD---ELELKNTLFERMIK 506
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
++ + L QYRMND I +++ Y L+S ++V + +L D + P
Sbjct: 507 KNKD-FSQILKIQYRMNDKIMGFSNGLFYNNQLVSDNSVKNQVLSD---LNPN------- 555
Query: 511 LLLDTRLPYGSLSLGCEEH-----LDLAGT------GSFYNEGEAEIVVHHVFSLICAGV 559
LD L GS+ G ++++G S+YN E +IV V + + +
Sbjct: 556 --LDLNLELGSIMEGLFNDNPLVLINISGNEKRDDFKSYYNTSELKIVDIIVDNYLKNDL 613
Query: 560 SPSAIAVQSPYVAQVQHLRERL-----DDLPE-------AAGVEVATIDSFQGREADAVI 607
I+V SPY AQV+ ++E L D++ + V+V +ID +QGRE + ++
Sbjct: 614 ---PISVISPYDAQVKKIKEMLSKYETDEIEDNEIINGRNVNVKVKSIDGYQGRENEIIV 670
Query: 608 ISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
+S VRS +GFL D RR+NVA+TRA + + +V + + N+ + L ++
Sbjct: 671 VSFVRSE---KIGFLSDLRRLNVALTRAKRKLILVGNFDFLTSNSTYSDLYDYM 721
>gi|328851436|gb|EGG00591.1| hypothetical protein MELLADRAFT_118002 [Melampsora larici-populina
98AG31]
Length = 1001
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 163/604 (26%), Positives = 262/604 (43%), Gaps = 98/604 (16%)
Query: 133 NLGEDGCTI---SVALESRHGDPTFSK--LFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+ G DG + S A+++ H DP + L K + I+ +L + L+ +
Sbjct: 396 DYGWDGTSFDRTSAAVQALHDDPDALRRNLTEKDIERSNIKITGSSLRH-----PLLFAE 450
Query: 188 KNGLHKRNP------SIAAVVTLFG-DKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQK 240
N +P SI+ LF D+ +W + + ++ D +G ++ Q
Sbjct: 451 NNESFAHDPITTHPSSISPTFHLFTRDQRINSWAKRHLRHPPLKMPGDPDLGH-LNEPQT 509
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR---AVQQGERVLVTAPTNAAVDNMVE 297
+AIA+ ++ PL +IQGPPGTGKT + +++A Q + + V APT+ +VDN+V
Sbjct: 510 RAIAMAISS--PLSLIQGPPGTGKTQTIIQMVALLKIHFQVSQPIAVCAPTHVSVDNLVL 567
Query: 298 KLSDVGLNIVRVGNPARISPAVASKSLGEI-VKSKLASFVAEFERKKSDLRKDLRQCLKD 356
L GL VR G +++ VA SL + ++ L + R+ L KDL K
Sbjct: 568 GLVKAGLKPVRCGEHLKVASEVAQYSLETLELQHSLTPTIDAKNRRLESLTKDLDAIEKR 627
Query: 357 ---------------DSLAAGIRQLLKQLGKTLKKK----EKETVKEVLSSAQVVLATNT 397
++ A + ++LK K L + ++ ++++S+ VV T
Sbjct: 628 WRNVKPAVSSKRQPANTKQARVLEILKTEYKRLLYEVYILKRRRQLQIIASSDVVCCTCL 687
Query: 398 GAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEG 438
GA + ++ ++ +L GD QL + LS A
Sbjct: 688 GAGASGLEAVEFASVIIDEAAMCHEPTALVPLTKGSAHAVLVGDHKQLPAITLSPAAEAH 747
Query: 439 GIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTP 498
G G+SL ER + + V + L QYRMN I+++ + E Y H LVD+
Sbjct: 748 GFGISLFERIQS-QQSVQSILLHKQYRMNPIISAFPNAEFYD-----------HALVDS- 794
Query: 499 FVKPTWITQCPLLL---LDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI 555
+KP I L ++S HL+ + N+ EAEIV+ + L+
Sbjct: 795 -IKPDSIKPVYFHFDRSLGPEQKSRAVSFVTHNHLETKIEKTLTNQTEAEIVLGILRDLL 853
Query: 556 CAG--VSPSAIAVQSPYVAQVQHLRERLDDLPEAAG------------VEVATIDSFQGR 601
+S I + +PY QV L + L P+ A VE+ T+D FQGR
Sbjct: 854 RTNPELSGRDIGIIAPYRGQVS-LLQSLQRQPQKASLIRNSEQSYRNEVEINTVDGFQGR 912
Query: 602 EADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
E +I+S VR N +GFL D RR NVA TRA + VV T+ + AR+ RH
Sbjct: 913 EKPVIILSCVRGNFERQIGFLADLRRFNVAATRAKQKFIVVGHLDTLQY----ARVNRHF 968
Query: 662 RYFG 665
++ G
Sbjct: 969 KFGG 972
>gi|312086798|ref|XP_003145219.1| hypothetical protein LOAG_09644 [Loa loa]
Length = 487
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 122/467 (26%), Positives = 217/467 (46%), Gaps = 92/467 (19%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
++ Q++A++ LNK RP++ I GPPGTGKT ++ EI+ AV + ++VL+ AP+N AV+N
Sbjct: 50 LNEDQRRAVSAALNKSRPIVTIHGPPGTGKTAVIAEIVIEAVSRKQKVLICAPSNVAVNN 109
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
+V++L D+ I +G + +S LAS + + + K SD++ ++
Sbjct: 110 IVDRLKDLD-GICVLGFNSELS---------------LASELEQHD-KFSDIQCAFKKLH 152
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEK--ETVKE-VLSSAQVVLATNTGAADPLIRR----- 406
++ + GK K +KE ++S QV++ T T ++ +R
Sbjct: 153 SEEGSGIISGNNRDEHGKAWHHASKMLWNLKESIVSCKQVIVCTLTNSSLRFLREQGFQP 212
Query: 407 -LDTFD--------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
L D L+ +R ++ GD QL PV+ + +
Sbjct: 213 NLTIIDEAAQALECVAWYSLLLSRRAVIVGDLWQLPPVLKTSR----------------- 255
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLL 511
W S Y L + +A+ LL D V + P++
Sbjct: 256 ---------------------WPSSFFYKSQLRPNEHIANQLLSDISKVPKGSLFDEPMV 294
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYV 571
+DT + E+++ S+ N EA++++ +V +L GV I + +PY+
Sbjct: 295 FIDTSHDKSA------ENIEKLYRYSYANALEAKLIIRYVTALSTFGVREEDIGIIAPYI 348
Query: 572 AQVQHLR------ERLDDLPEAAGV-EVATIDSFQGREADAVIISMVRSNTLGAVGFLGD 624
AQV+ L+ +D L ++ V ++D+FQG+E + V++S+VR+N+ G +GFL D
Sbjct: 349 AQVR-LKMIFGQLYNVDMLKKSLKTSRVNSVDAFQGQECEVVVMSLVRNNSDGRIGFLKD 407
Query: 625 SRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAE 671
RR NVA+TRA + +V + + H L L +++ GR+ E
Sbjct: 408 ERRFNVAVTRARRQFVLVGNVRMMKHAAHLQSLTEYMQSHGRIVKQE 454
>gi|395333482|gb|EJF65859.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 794
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 130/241 (53%), Gaps = 23/241 (9%)
Query: 442 VSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK 501
+L ER ++ + LT QYRM+ IAS+ SK MY L S +V +HLL D P K
Sbjct: 562 TTLFERLEKMYGPGIKRMLTVQYRMHAHIASFPSKVMYHSRLKSHPSVEAHLLRDLPNTK 621
Query: 502 ------PTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG---TGSFYNEGEAEIVVHHVF 552
I P++ DT GCE L G GS NE EA +V V
Sbjct: 622 TDSEDDEKEILGTPVVFYDT--------AGCEYFERLEGDGDEGSRCNENEASVVKMWVD 673
Query: 553 SLICAGVSPSAIAVQSPYVAQVQHLRERLDDL--PEAAGVEVATIDSFQGREADAVIISM 610
L AGV PS IAV +PY AQV L L + PE +E+ T+D QGRE +AVIIS+
Sbjct: 674 QLAGAGVLPSQIAVITPYQAQVTLLTSLLRPIYGPE---LEIGTVDGMQGREKEAVIISL 730
Query: 611 VRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNT-FLARLLRHIRYFGRVKH 669
VRSN VGFL D RR+NVA+TRA +H+ ++ DSST+ H + FL + + + V++
Sbjct: 731 VRSNEKREVGFLKDKRRLNVAMTRARRHLCIIGDSSTVQHGSPFLKKWMAWLEANADVRY 790
Query: 670 A 670
A
Sbjct: 791 A 791
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 139/503 (27%), Positives = 214/503 (42%), Gaps = 129/503 (25%)
Query: 12 RLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDT 71
+L F R ELL ER+AE+E T L S+ P + L G LC
Sbjct: 6 QLKAFITRHRELLNKEREAEIERTSLLL-----------SNCPPKVLEQKG-----LC-- 47
Query: 72 ICNLFVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLSPGDMVCVRVCDSRGACATS-- 125
+ L + S GLGG LV L R H PP TL PGD+ + S GA A
Sbjct: 48 LAGLGIASVGIGLGGKTLVELERPAAYHSSPLFPPHTLRPGDLARIEEHTS-GAAAPKKV 106
Query: 126 ---------------CIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRID---RI 167
++G V + E I+V DP + G+ + + R+
Sbjct: 107 AKTKKSGPAQKGEGDSVEGVVFKVSETRIVIAV-------DP--PETGGEDLDLPDRCRV 157
Query: 168 QGLADTLTYERNCEALMLLQK----NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWS 223
LA+++TY+R +AL L+K N K + + + L D+ + ++
Sbjct: 158 VKLANSVTYDRMIKALDQLEKVVLSNSDVKEDKFLPKLTPL--DRVLMGMAPPSERVPIK 215
Query: 224 EVKL-DGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV------ 276
++K DG + + SQ++AI L + I GPPGTGKT L E+I +
Sbjct: 216 DIKFFDG----SLNPSQQEAIRFALGSPE-VACIHGPPGTGKTHTLIELIRQLTTVTPTN 270
Query: 277 QQGERVLVTAPTNAAVDNMVEKL-----SDVG--LNIVRVGNPARISPAVASKSLGEIVK 329
+ R+LV +N +VDN++E+L D G L + RVG+PAR+ + +
Sbjct: 271 PKPLRLLVCGASNLSVDNILERLLALPAPDNGKKLKVTRVGHPARV-----------MNQ 319
Query: 330 SKLASFVAEFERKKSD---LRKDLRQCLKD--DSLAA----------------GIRQLLK 368
++ E + +SD L KD++ L+ D+L+ + + +K
Sbjct: 320 EEVLEVTLEVKASRSDQAALAKDVKNELEAALDTLSGKGKGAKGKAPRGLERKKMWEEVK 379
Query: 369 QLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV--------------- 413
L K +++E V+ V+S +QVVLAT A +R D FD+V
Sbjct: 380 ALRKEYRQRESGVVESVMSESQVVLATCHSAGGRQVRSQD-FDVVIIDEATQAVEAVCWI 438
Query: 414 ----GKRCILAGDQCQLAPVILS 432
++ ILAGD QL P I+S
Sbjct: 439 PIFKAQKLILAGDPMQLPPTIIS 461
>gi|148227244|ref|NP_001079231.1| DNA replication ATP-dependent helicase/nuclease DNA2 [Xenopus laevis]
gi|82105075|sp|Q8QHA5.1|DNA2_XENLA RecName: Full=DNA replication ATP-dependent helicase/nuclease DNA2;
AltName: Full=DNA replication ATP-dependent helicase-like
homolog; Includes: RecName: Full=DNA replication nuclease
DNA2; Includes: RecName: Full=DNA replication
ATP-dependent helicase DNA2
gi|18845092|gb|AAL79550.1|AF474372_1 helicase [Xenopus laevis]
Length = 1053
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 200/437 (45%), Gaps = 78/437 (17%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+ QK+A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AVDN
Sbjct: 627 LNKPQKQAMKRVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDN 685
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
++ KL + +R+G ++ P V S EI K+K
Sbjct: 686 ILLKLKKFQVGFLRLGRTQKLHPDVQEFSEEEICKAKSIK-------------------- 725
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL 412
SL+A ++E+ +S VV T G P+ RR D F +
Sbjct: 726 ---SLSA--------------------LEELYNSQPVVATTCMGVNHPIFTRRRFD-FCI 761
Query: 413 VGK-----------------RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
V + R +L GD QL P++ S +A E G+ SL +R E V
Sbjct: 762 VDEASQISQPICLGPLFFADRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQEAV 821
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI------TQCP 509
+ +LT QYRMN I + ++K +Y G L +S S+ +V P +K + +Q
Sbjct: 822 V--QLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRESQES 879
Query: 510 LLLLDTRLPYGSLSLGCEEH---LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAV 566
+ + D P + E L+ G N EA++V H + AG PS I +
Sbjct: 880 MWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPSDIGI 939
Query: 567 QSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDS 625
+PY Q++ + + L A+ VEV T+D +QGR+ +I+S VRSN G +G L D
Sbjct: 940 IAPYRQQLKMISNYFNSL-SASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDW 998
Query: 626 RRMNVAITRACKHVAVV 642
RR+NVA+TRA KH ++
Sbjct: 999 RRLNVALTRA-KHKLIM 1014
>gi|402468453|gb|EJW03611.1| hypothetical protein EDEG_02079 [Edhazardia aedis USNM 41457]
Length = 838
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 204/448 (45%), Gaps = 83/448 (18%)
Query: 256 IQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVE---KLSDVGLNIVRVGNP 312
I GPPGTGKT + EII + + ++VLV P+NA++DN++ KL + G + VR+G+
Sbjct: 420 IFGPPGTGKTSTIVEIIYQLRCRNKKVLVCGPSNASIDNIMHGFIKL-NTGFDFVRIGSR 478
Query: 313 ARISPAVASKSLGEI-------VKSKLASFVAEFERKKSDLRKD--LRQCLKDDSLAAGI 363
++ S + ++ EI L++ + E D+RKD + +++ +
Sbjct: 479 SKCSEDLLKYNISEIDDVIIGNYHDTLSNLIGE------DIRKDAAIDDTVENYNFDYET 532
Query: 364 RQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLD--TFD---------- 411
+ ++++ + + K+ + +V AT G+ + D D
Sbjct: 533 MEKMEEVYQNMSNYTKKVAFDKFLQHDLVFATLFGSLKYTTKHFDWVIIDECCQALEIEA 592
Query: 412 ----LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
+ GK ILAGD CQL + +S ER + L QYRM
Sbjct: 593 FCSVMKGKNFILAGDPCQLGAITYLPDE------ISFFERMGKIK----TIMLQNQYRMP 642
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
+ + +++ Y +IS ++ D F + P++ +DT C+
Sbjct: 643 ELLIRFSNHYFYNSRIISP------IICDFKFFDKS-----PIVFIDT----------CK 681
Query: 528 EHLDLAGTG-SFYNEGEAEIVVHHVFSL--ICAGVSPS--------AIAVQSPYVAQVQH 576
+ G S+YN+ E E+V+ + L I + + + SPY+ Q+
Sbjct: 682 STTSESKHGNSYYNDHEQEMVIEFLNYLDSIAFQIHEKKNKSNKIVTVGIISPYLEQI-- 739
Query: 577 LRERLDDLPEAAGVE--VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITR 634
ER+ + ++ + ++T+D+FQG+E D +IIS+VRSN L +GFL D +RMNVAITR
Sbjct: 740 --ERIKNASKSYNFDLMISTVDAFQGQEKDFIIISLVRSNKLSQIGFLKDEKRMNVAITR 797
Query: 635 ACKHVAVVCDSSTICHNTFLARLLRHIR 662
K + +V +S N F + ++
Sbjct: 798 CKKGLIIVANSLVFEKNVFYRDYFKFLK 825
>gi|294936357|ref|XP_002781732.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239892654|gb|EER13527.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 503
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 203/453 (44%), Gaps = 77/453 (16%)
Query: 229 GIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT----GLLKE-IIARAVQQGE-RV 282
G +G ++Q AI + P+ +IQGPPGTGKT L+K ++ + +GE +V
Sbjct: 62 GDLGMPLTEAQLNAIRSSW--ETPITLIQGPPGTGKTHTAVALVKHWVVNKITARGEGKV 119
Query: 283 LVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
LV A +NAA DN+ + G+ RVG ++ + + V KL E R
Sbjct: 120 LVVADSNAAADNIRGLMVKAGIECYRVGRAQETDGG--TREVSDDVLRKL-----EGTRA 172
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP 402
D R+ A I + +L ++ +K V E QV++AT G+
Sbjct: 173 VRDYRR------------AVILGDIHKLPYFRQRIDKAAVDEY----QVLVATCIGSGHQ 216
Query: 403 LIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVS 443
L+ +D ++ KRC+L GD QL + A GG+G+S
Sbjct: 217 LLDSVDFESVIIDECTQATEPASLVPLARGAKRCVLLGDHKQLPATVHCNTAKSGGLGIS 276
Query: 444 LLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP- 502
L ER A G L Q RM+ +IA +++ Y + H + D P +
Sbjct: 277 LFERLAM--SGTPVHLLDIQRRMHPSIAEFSNHHFYDNRI-------KHEVSDRPLIPGL 327
Query: 503 TWIT-QCPLLLLDT-RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVS 560
W Q + L+DT +L G +G S N EA +++ ++ + G
Sbjct: 328 RWPNPQIRVALVDTSQLIAGESKVGT----------SLMNREEARLLLDALYDAVANGTP 377
Query: 561 PSAIAVQSPYVAQVQH----LRERLDDLPEA-AGVEVATIDSFQGREADAVIISMVRSNT 615
P I + PY AQ H L+E PE A V++ T+D FQG E + + S VRSN
Sbjct: 378 PGQIGLVVPYNAQKSHVIAALKEDTRFSPEQRAAVQINTVDGFQGHEKELIFFSAVRSNV 437
Query: 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
G VGF+ D RRMNV +TRA + + V CD +T+
Sbjct: 438 SGQVGFIADPRRMNVMLTRARRGLVVFCDVNTM 470
>gi|302825099|ref|XP_002994184.1| hypothetical protein SELMODRAFT_138328 [Selaginella moellendorffii]
gi|300137957|gb|EFJ04747.1| hypothetical protein SELMODRAFT_138328 [Selaginella moellendorffii]
Length = 226
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 119/224 (53%), Gaps = 26/224 (11%)
Query: 460 LTTQYRMNDAIASWASKEMYGGSLISSST------------------VASHLLVDTPFVK 501
LT QYRM++ I W+S E+YGG + + T VAS L + VK
Sbjct: 2 LTVQYRMHEHIMDWSSHELYGGKVGTDWTFLKLTTRHAFYQIQAHELVASRKLFELDGVK 61
Query: 502 PTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSP 561
T T+ L+L+D GC+ T S +NEGEA I + H L+ +GV
Sbjct: 62 KTPATEHTLVLIDI--------CGCDMEESKDETESSFNEGEARIAITHAQKLVESGVKA 113
Query: 562 SAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
I + +PY AQV R+ VE++TID FQGRE +A+IISMVRSN VGF
Sbjct: 114 IDIGIVTPYAAQVSIYCFRVCVEQRLLEVEISTIDGFQGREKEAMIISMVRSNDKKEVGF 173
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
L D RRMNVA+TRA + V+CDS T+ ++FL RLL + G
Sbjct: 174 LSDKRRMNVAVTRAKRQCCVICDSDTVGKDSFLKRLLDYFEKHG 217
>gi|345007371|ref|YP_004810223.1| AAA ATPase [halophilic archaeon DL31]
gi|344322997|gb|AEN07850.1| AAA ATPase [halophilic archaeon DL31]
Length = 793
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 159/558 (28%), Positives = 239/558 (42%), Gaps = 117/558 (20%)
Query: 136 EDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRN 195
E+ +I +++ ++ + + +I GL + + YER +A+ +Q N +R
Sbjct: 274 ENERSIGISVSQKYSKQFLDRALTDDTELYQIVGLLNRVPYERERDAIEQIQSNPKKRRV 333
Query: 196 PSIAAVVTLFGD--------KEDVTWLEENDLAD-------WSEVKLDGIMGKTFDDSQK 240
+ +T D + D T +EN D S+ L G G ++ Q
Sbjct: 334 LTGNKRLTFRPDFAIATRKIQPDPT--DENPNPDSVRFYDTTSDTPLVG--GVKLNEYQA 389
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300
+A L L K + I GPPGTGKT L I + + +G VL++A +N AVDN++
Sbjct: 390 EAAELCLRSKE-VYCIHGPPGTGKTRTLNAIARQVIAEGGTVLMSAHSNQAVDNLL---- 444
Query: 301 DVGLNIVRVGNPARISPAVAS-KSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSL 359
VG+ A +P S +L + L ++ SD
Sbjct: 445 --------VGDSAPNAPDEGSLHALAQDPNETLDITISRVGTNSSD-------------- 482
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------ 413
K +K + E SSA +V AT T AAD + +FDL
Sbjct: 483 ---------------KVVQKHYIGESSSSANIVGAT-TSAAD--MFDAGSFDLAIVDEAT 524
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
+ ILAGD QL P S +A E I VSL E ++ + T L
Sbjct: 525 QASIPATLVPYTCADKLILAGDHKQLPPY-KSTEAEERPIYVSLFEHMIETYDTGIQTML 583
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRMN+ IA + S+ Y SL ++ + + P PL+ ++ P
Sbjct: 584 RRQYRMNEQIAEFPSQAFYNSSLETADRNTNWTVPGEP----------PLIGINIDGPES 633
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQV----QH 576
S +GT S NE EA +V V +L GV S I + +PY AQ+ QH
Sbjct: 634 S-----------SGT-SKKNEREARVVTKRVKALAEKGVRMSDIGIITPYSAQIPTIKQH 681
Query: 577 LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLG----DSRRMNVAI 632
L +++ + + TID+FQG E +A+IIS VRSN G GFL RR+NVA+
Sbjct: 682 LHNHVEE--RTNRITIDTIDAFQGSEREAIIISFVRSNDTGESGFLTLPDEGPRRLNVAL 739
Query: 633 TRACKHVAVVCDSSTICH 650
TRA KH++++ D T+
Sbjct: 740 TRAKKHLSIIADFETLSQ 757
>gi|340507668|gb|EGR33594.1| immunoglobulin mu binding protein 2, putative [Ichthyophthirius
multifiliis]
Length = 577
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 161/592 (27%), Positives = 263/592 (44%), Gaps = 122/592 (20%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
L +F ++ ++L E + E++ E L+ + IE L G A I
Sbjct: 2 LQQFLEKQKKILEEEHNVEIQEHNELLS----------QNTSIE-LQQQGYA-------I 43
Query: 73 CNLFVVSTSTGLGGMHLVLF-------------RVEGNHRLPPTTLSPGDMVCVRVCDSR 119
L + ST TGL G L F +++ + +LP + S GD + + D+
Sbjct: 44 NKLKLKSTKTGLYGRTLCTFAHPHYSKKSIENPQLQKSLQLPESKFSNGDNILIYKFDTY 103
Query: 120 GACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGL-------AD 172
+ G ++ IS F K + +R+Q +
Sbjct: 104 FDKKQALENGVIYKKTNFKIIIS---------------FDKDFQPNRLQNEVISLVIETN 148
Query: 173 TLTYERNCEAL-MLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIM 231
+TY+R + L L QK N +A++ + D +D + L+ N + +K D +
Sbjct: 149 EITYKRCAKTLDQLSQKYS--DSNFQGSALIRVLIDGDDPS-LQNNFVKQAHLLKQDTHL 205
Query: 232 GKTFDDS----QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287
F+ + QK+A+ L K + +I GPPGTGKT + E+I +AV+ G +VL A
Sbjct: 206 NDYFNQNLNKEQKEAVEFAL-KSPNIALIHGPPGTGKTSTVCELILQAVKMGMKVLACAG 264
Query: 288 TNAAVDNMVEKLSD--VGLNIVRVGNPARISPAVASKSLG-EIVKS----KLASFVAEFE 340
+N AVDN+VE+L +R+G+PAR+ + L +I K+ ++ E +
Sbjct: 265 SNIAVDNIVERLQKQRQWCKALRIGHPARMIKEIYESCLDFQISKTPSYQEIKELKREIQ 324
Query: 341 RKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA 400
+K SDL + K D I+ L L ++++++E ++KEVL+ QV+ TNTGA
Sbjct: 325 KKLSDLNFE-----KSDFQRKKIKDFLSSLRQSIREQESVSIKEVLNETQVICCTNTGAD 379
Query: 401 DPLIRRLDT---FDLV-------------------GKRCILAGDQCQLAPVILSRKALEG 438
D + ++ FDL+ GKR + AGD QL P I K+LE
Sbjct: 380 DYIFKKEMKNFIFDLIIIDECAQSMELSCWIPLLKGKRAVFAGDHKQLQPTI---KSLEN 436
Query: 439 GIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASWASKEMYGGSLISSSTVASH-LLV 495
+L +R +H T L TQYRMN+ I ++S+ +Y L++ +VA+H +
Sbjct: 437 KKESTLFDR---VHNQFPQTSKLLQTQYRMNNLIMQFSSQFVYNNQLLAHDSVANHSICQ 493
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIV 547
D V LL +DT G + ++ GS YN GEA++V
Sbjct: 494 DLDLV---------LLFVDTS--------GAKMGENVCEKGSKYNLGEADLV 528
>gi|260950507|ref|XP_002619550.1| hypothetical protein CLUG_00709 [Clavispora lusitaniae ATCC 42720]
gi|238847122|gb|EEQ36586.1| hypothetical protein CLUG_00709 [Clavispora lusitaniae ATCC 42720]
Length = 1970
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 149/535 (27%), Positives = 235/535 (43%), Gaps = 117/535 (21%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV------------------- 276
+ SQ KAI LG + +IQGPPGTGKT + I+ +
Sbjct: 1257 NKSQAKAI-LGSFQNNGFSLIQGPPGTGKTKTILGIVGNTLSHSKKSNVIEVPGVTSSDH 1315
Query: 277 ----QQGERVLVTAPTNAAVDNMVEKL---------SDVGLNIVRVGNPARISPAVASKS 323
+QG +VL+ AP+NAAVD +V +L ++ IVR+G I+ +V
Sbjct: 1316 HSDKEQGPKVLICAPSNAAVDELVVRLRQGVHNAKGEEMIPKIVRLGRSDAINSSVRDLG 1375
Query: 324 LGEIVKSKL----------ASFVAEFER---KKSDLRKDLRQCLKDDSLAAGIRQLLKQ- 369
L E ++ +L + E + ++ ++R+ LR+ DD A + L++
Sbjct: 1376 LEEQIEKQLKVRNISVVIDPNIRTEHNKCIAERDEIREKLRRGDLDDEKIAALETQLREI 1435
Query: 370 ------LGKTL-------------KKKEKETVK-EVLSSAQVVLATNTGAADPLIRRLD- 408
LGK L K+ EK ++ ++LS AQV+ +T +G+A + +
Sbjct: 1436 NKKRSELGKRLDEQRENASIAYRTKEIEKRQLQAKILSEAQVICSTLSGSAHDFLASMSM 1495
Query: 409 TFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERA 448
FD V K+CI+ GD QL P +LS+KA SL R
Sbjct: 1496 KFDQVIIDEACQCVELSAIIPLRYGCKKCIMVGDPNQLPPTVLSQKAASFKYEESLFVRM 1555
Query: 449 A-TLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
T E V L QYRM+ I+ + S + Y L T H++ +P W
Sbjct: 1556 QRTNPESVYL--LDVQYRMHPQISKFPSAQFYKSKL----TDGPHMMEKNN--RP-WHAD 1606
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEI---VVHHVFSLICAGVSPSAI 564
PL PY +G H T SF+N EA++ +V + ++ I
Sbjct: 1607 FPLS------PYRFFDIGGR-HQQNVQTKSFFNPSEAKVALELVEKLMQILPQDKFRGRI 1659
Query: 565 AVQSPYVAQVQHLRERLDDLPEAAG------VEVATIDSFQGREADAVIISMVRSNTLGA 618
+ SPY Q++ L+ D G ++ T+D FQG+E + +I+S VR++ G+
Sbjct: 1660 GIISPYKEQIRTLK---DTFVRKYGNLILNEIDFNTVDGFQGQEKEIIIMSCVRASESGS 1716
Query: 619 VGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPG 673
VGFL D RRMNVA+TRA + ++ + ++ + ++L+ V AEPG
Sbjct: 1717 VGFLSDVRRMNVALTRARTTLWILGNKQSLRRDKIWSKLIADAESRDCVTSAEPG 1771
>gi|399218391|emb|CCF75278.1| unnamed protein product [Babesia microti strain RI]
Length = 1229
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 211/433 (48%), Gaps = 34/433 (7%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQ-GPPGTGKTGLLKEII--ARAVQQGERVLVTAPTN 289
KT + + +++A + L +IQ GPPGTGKT L II + +++L A +N
Sbjct: 777 KTMNLTPAQSLACKSAIENELTLIQVGPPGTGKTHLACSIIHCWSKIYSYDKILAVADSN 836
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD 349
A DN+++ L+D ++ +R+G + P + +++ + + E+ + R
Sbjct: 837 IAADNLLQGLTDRDISAIRIGQGSE--PELQERAIQGMKRYN------EYTTLRDSGRYK 888
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
LK ++ +++ + + + EV + +V++ + L ++
Sbjct: 889 EAMTLKTQMISEAVKRARIVIATCVGCGNEIVSSEVFT--KVIIDECAQSIGKLTLDIEC 946
Query: 410 FDLVG-----KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQY 464
+++ + +L GD QL P ILS+ AL G+ +SLLER A + L Q
Sbjct: 947 SNIIPLTHSCNQLVLIGDHKQLRPTILSQDALFKGLSISLLERLAIFAPSCVHL-LNVQR 1005
Query: 465 RMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
RM+ +I+ + ++ Y L V ++ TP W + + + + +S+
Sbjct: 1006 RMHPSISQFPNQHFYEHRLTDGENVFAY----TPLKGFKWPCE------NFNVCFVDVSI 1055
Query: 525 GCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRERLD 582
GC + + S YN E +VV + S I AG ++ I + +PY +Q HL+ +++
Sbjct: 1056 GCAGSNYERPQGQSKYNIIETNVVVALLSSFISAGEITSRQIGILTPYDSQKYHLKTKIN 1115
Query: 583 D-LPE--AAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
P G+E+ ++D FQG+E D +I S VRSN+ G VGFL DSRRMNV +TRA + +
Sbjct: 1116 STFPSDVCNGLEIDSVDGFQGKEKDLIIFSAVRSNSDGTVGFLKDSRRMNVMLTRARRGI 1175
Query: 640 AVVCDSSTICHNT 652
VV D T+ + T
Sbjct: 1176 VVVGDRFTLMNET 1188
>gi|335437890|ref|ZP_08560648.1| DNA-binding protein-like protein [Halorhabdus tiamatea SARL4B]
gi|335438180|ref|ZP_08560930.1| DNA-binding protein-like protein [Halorhabdus tiamatea SARL4B]
gi|334892869|gb|EGM31096.1| DNA-binding protein-like protein [Halorhabdus tiamatea SARL4B]
gi|334894051|gb|EGM32259.1| DNA-binding protein-like protein [Halorhabdus tiamatea SARL4B]
Length = 736
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 141/424 (33%), Positives = 196/424 (46%), Gaps = 97/424 (22%)
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312
+ I GPPGTGKT L EII RAV+ GERVLV A +N AVD NIV G+
Sbjct: 351 VFCIHGPPGTGKTRTLIEIIRRAVEAGERVLVCADSNQAVD-----------NIV-AGDS 398
Query: 313 ARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGK 372
SP +S L ++ + + R Q D L++Q
Sbjct: 399 TPDSPD----------ESSLHAYAQHGAEELTLYRPGGGQHSSSD--------LVEQYA- 439
Query: 373 TLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------------- 413
+ A VV TN GAA+ +FDLV
Sbjct: 440 -----------DFEGLADVVATTNNGAAE----VAGSFDLVVHDEATQATVPSSCIPLTK 484
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLER---AATLHEGVLATKLTTQYRMNDAI 470
G R +LAGD QL P + + +G+SL E + ++EGV +L TQYRM+ I
Sbjct: 485 GDRIVLAGDHKQLPPFRSTESPPDSELGMSLFEHLYASGGIYEGV-GMQLKTQYRMHRDI 543
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
A+++++E Y L S TV + PT + GS+++ +EH
Sbjct: 544 AAFSNREFYDKELRSGRTVD---------ILPTRDEAIEAFNIG-----GSVTV--DEH- 586
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGV 590
S NE EA++V V L+ +S S I V +PY AQV+ ++ L+D
Sbjct: 587 ------SRSNENEAKMVTRLVTDLL-DDLSVSDIGVITPYRAQVRKIQSMLEDRLSGDLP 639
Query: 591 EVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS----RRMNVAITRACKHVAVVCDSS 646
V TIDSFQG E +A++IS+VRSN+ G +GFLG RR+NVA+TRA ++ AVV D
Sbjct: 640 TVDTIDSFQGSEREAIVISLVRSNSDGNLGFLGRDPDGPRRLNVALTRAKRYCAVVADLH 699
Query: 647 TICH 650
T +
Sbjct: 700 TFQY 703
>gi|344301279|gb|EGW31591.1| hypothetical protein SPAPADRAFT_51586 [Spathaspora passalidarum NRRL
Y-27907]
Length = 1937
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 144/542 (26%), Positives = 225/542 (41%), Gaps = 114/542 (21%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE----------------R 281
SQ KAI LG ++ +IQGPPGTGKT + I+ ++ Q + +
Sbjct: 1268 SQAKAI-LGTHQSEGFSLIQGPPGTGKTKTILGIVGYSLSQKDEKILDIPGHTPTTDPAK 1326
Query: 282 VLVTAPTNAAVDNMVEKLSD---------VGLNIVRVGNPARISPAVASKSLGEIVKSKL 332
+L+ AP+NAAVD +V +L D + L +VR+G I+ +V +L E+V +L
Sbjct: 1327 ILICAPSNAAVDELVLRLRDGVKNSSGETMNLKVVRLGRSDAINASVRDLTLEELVDKEL 1386
Query: 333 AS---------FVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVK 383
+ + + K + R LR L ++SL+ L+ +T+ KK E K
Sbjct: 1387 QTKAVDVNIDPTIRQQHSKCIEERDALRARLVNESLSEKEMTDLEDRLRTVNKKRSELAK 1446
Query: 384 E-------------------------VLSSAQVVLATNTGAADPLIRRLD-TFDLV---- 413
+LS AQV+ +T +G+A + L FD V
Sbjct: 1447 RLDEQRERASIAYRTKEIERRNAQARILSQAQVICSTLSGSAHDFLASLSLKFDKVIVDE 1506
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
+ CI+ GD QL P +LS+ A SL R H +
Sbjct: 1507 ACQCVELSAIIPLRYGCRTCIMVGDPNQLPPTVLSQAAASYNYEQSLFVRMQKNHPDSVY 1566
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
L QYRM+ I+ + S E Y L + D P W PL
Sbjct: 1567 L-LDVQYRMHPQISQFPSAEFYNSKLKDGEGMLEK--NDRP-----WHKDPPLT------ 1612
Query: 518 PYGSLSLGCEEHLDLAGTGSFYNEGEAEI---VVHHVFSLICAGVSPSAIAVQSPYVAQV 574
PY + + D + S +N EA + +V + +++ I + SPY Q+
Sbjct: 1613 PYRFFDIVSKHERD-DQSRSLFNVEEARVALELVQKLMTILPQDKFRGRIGIISPYKEQI 1671
Query: 575 QHLRERL---------DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
+ ++ DD ++ T+D FQG+E + +I+S VR++ G VGFL D
Sbjct: 1672 RSIKNEFIRRYGRAIQDD------IDFNTVDGFQGQEKEIIIMSCVRASPSGNVGFLSDV 1725
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGLGMDPM 685
RRMNVA+TRA + ++ + ++ N RLL + A PG SG+ +
Sbjct: 1726 RRMNVALTRARTTLWILGNKDSLSRNNVWRRLLEDASNRDCISKAYPGFLNMSGVKRQHI 1785
Query: 686 LP 687
P
Sbjct: 1786 EP 1787
>gi|390596463|gb|EIN05865.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1024
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 148/528 (28%), Positives = 241/528 (45%), Gaps = 113/528 (21%)
Query: 213 WLEENDLADWSE-------VKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKT 265
++E+ + W+ V+++G ++SQ +A+A+ + ++ + ++QGPPGTGKT
Sbjct: 451 FVEDQLIQSWARRYMRPNPVRIEGDPVLPLNESQTRAVAMMVGER--VSLVQGPPGTGKT 508
Query: 266 GLLKE---IIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASK 322
+ E ++ R +LV TN AVDN+VE L+ L+ +RVG ++ P++
Sbjct: 509 KTIIEAVKLLKRHFAVPHPILVCTFTNVAVDNLVEGLAP-SLSPLRVGYGGKVKPSLYPH 567
Query: 323 SL-GEIVKSKLASFVAEFERKKSDL----------------------------RKDLRQC 353
+L ++ + +L S V + ER++ L RK
Sbjct: 568 TLDAKLEQHELYSEVLKLERQEEALEKRVVSLRMSSTKAAEKLSIMPLDAEHDRKRANAT 627
Query: 354 LKDDSLAAGIRQLLKQLGKTLKK---KEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
+ D L + Q LG K+ +++ + +V+ +A VV T +A + +D F
Sbjct: 628 KRRDRLDQEVTQCGTSLGNIRKRIYAFKQQMLSDVVHAADVVCTTCITSACTALNVID-F 686
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
+V + L GD QL PVI SR+A+ GG+G+SL ER
Sbjct: 687 PVVFLDEASMSTEPASLIPLMKGSQHMTLIGDHKQLPPVITSREAIAGGLGISLFERLT- 745
Query: 451 LHEGVLAT-KLTTQYRMNDAIASWASKEMYG-----GSLISSSTVASHLLVDTPF---VK 501
EGV+ + L QYRM+ I+ + S E Y G L SS V + L T +
Sbjct: 746 -EEGVVPSIMLDLQYRMHPQISKFPSAEFYNFALRDGMLDSSGGVPAQLRPPTSAHLQMN 804
Query: 502 PTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG--V 559
P + ++ LD + G E D S N +A+IV + L+ +
Sbjct: 805 PQTGDRPSVIFLDHQ--------GLESPKD----RSKVNYTDADIVCSVIEDLLIQNPDL 852
Query: 560 SPSAIAVQSPYVAQVQHLR-------------------ERLDDLPEAAGVEVATIDSFQG 600
I V +PYVAQ++ L +R LP+ +++ T+D F+G
Sbjct: 853 RGEDIGVIAPYVAQIRLLTRLLTTDAKSQARFQAALGDQRAMQLPQ---IDIKTVDGFEG 909
Query: 601 READAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
RE D +I S VRSN+ G VGFL D RR+NV +TRA + + VV + +T+
Sbjct: 910 REKDVIIFSTVRSNSSGHVGFLADRRRLNVGLTRAKRGLFVVGNLNTL 957
>gi|449546124|gb|EMD37094.1| hypothetical protein CERSUDRAFT_155577 [Ceriporiopsis subvermispora
B]
Length = 803
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 128/238 (53%), Gaps = 19/238 (7%)
Query: 443 SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
+L +R ++ + L QYRM+ IA++ SK MY G L S +V+SHLL D P K
Sbjct: 572 TLFDRLENMYGPGIKRMLNVQYRMHAQIAAFPSKTMYHGRLASHPSVSSHLLRDLPNAKA 631
Query: 503 ------TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAG---TGSFYNEGEAEIVVHHVFS 553
I P++ DT GCE + G GS NE EA +V + +
Sbjct: 632 ESEEDEKEILATPVVFFDT--------AGCEYFERVEGDGDEGSRCNENEATVVKNWIEQ 683
Query: 554 LICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRS 613
L+ AGV S IA+ +PY AQV L L +E+ T+D QGRE DAVIIS+VRS
Sbjct: 684 LVGAGVLASQIAIITPYQAQVA-LFTTLLRPAYGPDLEIGTVDGMQGREKDAVIISLVRS 742
Query: 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH-NTFLARLLRHIRYFGRVKHA 670
N VGFL D RR+NVA+TRA +H+ +V DSST+ H FL + + + V++A
Sbjct: 743 NEKREVGFLKDKRRLNVAMTRAKRHLCIVGDSSTVQHGGPFLKKWMSWLEANADVRYA 800
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 133/504 (26%), Positives = 208/504 (41%), Gaps = 130/504 (25%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSH--GRAPQELCD 70
L F R +LL ER+AE+E T L+S+ R ++
Sbjct: 7 LRAFIVRHRQLLAREREAEVERTS--------------------LLLSNCGPRVLEQKGL 46
Query: 71 TICNLFVVSTSTGLGGMHLV-LFRVEGNHR---LPPTTLSPGDMVCVR--VCDSRGACA- 123
+ L + S + GLGG LV L R H P TL PGD+ + V + GA
Sbjct: 47 ALGGLGIASVNIGLGGKTLVELERPTAYHSTPIFPSHTLRPGDLARIEENVSPASGARKP 106
Query: 124 ---------------TSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQ 168
+ ++G V+ L + I+V D + R+
Sbjct: 107 AKGKKPISGNADSQRSGGVEGVVYKLSDVRIVIAVNPSESSEDLDLPERC-------RVV 159
Query: 169 GLADTLTYERNC--EALMLLQKNGLHKRNPS----IAAVVTLFGDKEDVTWLEENDLADW 222
LA+++TY+R +A+ L+K L PS + V L ++ A
Sbjct: 160 KLANSVTYDRRVMDKAIDQLEKLVLPGDAPSTDKSLPKVTNLIHVLMGMS-------APS 212
Query: 223 SEVKLDGIMGKTFDDS----QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ- 277
++ + G+ K FDDS QK+A+ L + I GPPGTGKT L E+I +
Sbjct: 213 EKMPIKGL--KFFDDSLNESQKEAVKFALESPE-VACIHGPPGTGKTHTLIEVIRQMTTA 269
Query: 278 -----QGERVLVTAPTNAAVDNMVEKL-------SDVGLNIVRVGNPARISPAVASKSLG 325
+ R+LV +N +VDN++E+L + L + R+G+PAR+ +A +
Sbjct: 270 TPSNPKSLRLLVCGASNLSVDNILERLLALPAPQNGEKLKVTRIGHPARV---MAHEG-- 324
Query: 326 EIVKSKLASFVAEFERKKSDLRKDLRQCLKD--DSLAA----------------GIRQLL 367
++ S L + E ++ L KD++ L+ D L+ I + +
Sbjct: 325 -VLDSTLEVKASRSE--QAALAKDVKNELEAALDVLSGKGKGVKGKAPRGAERKKIWEEV 381
Query: 368 KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV-------------- 413
K L K +++E V+ VLS +QVVLAT + IR + FD+V
Sbjct: 382 KALRKEYRQRESGVVESVLSESQVVLATCHSSGGRQIRNHE-FDVVIIDEATQAVEAVCW 440
Query: 414 -----GKRCILAGDQCQLAPVILS 432
K+ ILAGD QL P I+S
Sbjct: 441 IPIFKAKKLILAGDPMQLPPTIIS 464
>gi|336366511|gb|EGN94858.1| hypothetical protein SERLA73DRAFT_61821 [Serpula lacrymans var.
lacrymans S7.3]
Length = 801
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 138/470 (29%), Positives = 219/470 (46%), Gaps = 79/470 (16%)
Query: 225 VKLDG---IMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE- 280
V++DG I G + +Q +A+A+ + ++ + ++QGPPGTGKT + E I E
Sbjct: 293 VRIDGDPIITG--LNSTQIRAVAMMIGER--ISLVQGPPGTGKTKTIIETIKLLKSHFEV 348
Query: 281 --RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLG-----EIVKSKLA 333
++V TN AVDN+VE + G+ +RVG +I ++ +L +K K+
Sbjct: 349 HHPIVVCTFTNVAVDNLVEGFAASGVKPLRVGYSGKIKASLEEFTLDYKLSRHPLKPKVD 408
Query: 334 SFVAE---FERKKSDLRKDLRQCLKDDS-------------LAAGIRQLLKQLGKTLKKK 377
+ + E++K DL + +++ DS LA RQL+ +G L
Sbjct: 409 KAIEDQTHTEKRKIDLSRKIKELQSADSTRVLKRLEGMRTALAIVERQLVA-IGAKLYAM 467
Query: 378 EKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALE 437
+E +++++S A V + L GD QL P+I SR+A
Sbjct: 468 HQEMLRDIVSQADV----------------------SQHVALIGDHKQLPPIITSREAKL 505
Query: 438 GGIGVSLLERAATLHEGVLAT-KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
G+G+SL ER A EGV+ + L QYRM+ I+ + S E Y SL + + AS
Sbjct: 506 KGLGISLFERLA--EEGVVPSIMLDIQYRMHPTISHFPSLEFYNFSLQNGTVDASG--NT 561
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
TP + P + + L P S+ + A S N EA IV V L+
Sbjct: 562 TPSLLPPLSSHLEVNLETGNRP--SVVFLDHTGSESARDRSRVNWNEANIVCSVVEDLLL 619
Query: 557 AG--VSPSAIAVQSPYVAQVQHLRERLDD----------------LPEAAGVEVATIDSF 598
+ I + +PY AQ+ L L+ + + + +E+ T+D F
Sbjct: 620 QNEHLKGKDIGIIAPYAAQISLLTRLLNTNAKYHTRFKNALGDHRVMQLSNIEIKTVDGF 679
Query: 599 QGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
+GRE + +I S VR+NT G +GFL D RR+NV +TRA + + VV ST+
Sbjct: 680 EGREKEVIIFSTVRNNTSGYIGFLADRRRLNVGLTRAKRGLFVVGSISTL 729
>gi|408794598|ref|ZP_11206203.1| AAA domain protein [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408461833|gb|EKJ85563.1| AAA domain protein [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 608
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 208/442 (47%), Gaps = 54/442 (12%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
+I GPPGTGKT LL + + + + E VL PTN A D +VE G+ ++R+GN +
Sbjct: 186 MIFGPPGTGKTTLLMQAVEKIKSKNESVLTLCPTNFACDYIVELALKKGIRVIRLGNSTK 245
Query: 315 ISPAVASKSLGEIVKS-----KLASFVAEF---ERKKSDLRKDLRQCLKDDSLAAGIRQL 366
I V + +++ ++ ++ E ++K + +++ + +++ A R+
Sbjct: 246 IKEEVLPHHIDHLIQEHPDQKQIHNWQTELKAIQKKANSWKRNFGKEEREERKAQ--RKE 303
Query: 367 LKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV------------- 413
K L T+++ E ++L +A+++++T +G + ++ FD V
Sbjct: 304 AKFLLSTIREAESNIRMKLLDNAELIVSTFSGFGNEF-KKGREFDYVFVDEATQSLDPGC 362
Query: 414 ------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN 467
GK+ GD QL S + S LE+A T G L Q+RM
Sbjct: 363 YLALYAGKKTFFFGDPKQLGA---SFSHPDHTAVHSFLEKAITYDSGDRVIFLEKQFRMK 419
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
I + + Y +++ + +D V + +L +DT GS S E
Sbjct: 420 PEILGFPNGTYYENKILTHPDAKWNHNIDISHV---FGNNSSILWIDTA---GSDS---E 470
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
E + SF+N+ E ++V +L G+ V SPY QV+ L + +
Sbjct: 471 EETE-GDEPSFFNKTEIQLVE----TLFRLGIPKEQSIVISPYRGQVEKL------IKVS 519
Query: 588 AGVEVA-TIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646
+G TIDSFQGRE++ VI+S+VRSN+ G VGFL + +R+NVA+TRA H+ ++ DS
Sbjct: 520 SGRWFTQTIDSFQGRESEIVILSLVRSNSDGEVGFLLNPKRLNVALTRAKSHLILIGDSG 579
Query: 647 TICHNTFLARLLRHIRYFGRVK 668
T+C L +I G ++
Sbjct: 580 TLCQTKEFQDLYSYIESAGEIR 601
>gi|356497432|ref|XP_003517564.1| PREDICTED: probable RNA helicase SDE3-like [Glycine max]
Length = 886
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 160/585 (27%), Positives = 249/585 (42%), Gaps = 95/585 (16%)
Query: 104 TLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVR 163
+L GD + V++ R T QG++H + D + DP F R
Sbjct: 293 SLVHGDFIFVKLTSERDNNTTPVYQGYIHRVEADEIYLKF-------DPGFHFYHRDENR 345
Query: 164 IDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWS 223
D TY R + L++ + +VT D + +
Sbjct: 346 YDV------HFTYNR-------INMRRLYQAAEAAEKLVT------DFLFPSTSRKRHIK 386
Query: 224 EVKLDGIMGKTFDDSQKKAIALGLN-KKRPLLIIQGPPGTGKTGLLKEIIAR--AVQQGE 280
L I G TF++ Q +I + L K P +I GPPGTGKT + E I + +
Sbjct: 387 TTSLLPISG-TFNEEQISSIKMILGCKGAPPYMIHGPPGTGKTRTMVEAILQLYKYHKNA 445
Query: 281 RVLVTAPTNAAVDNMVEKL---SDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVA 337
R+LV AP+N+A D ++EKL DV R R++ AS E VK + F
Sbjct: 446 RILVCAPSNSAADYILEKLLAQQDVEF---RENEIFRLN---ASARPYEDVKPEFVRFCF 499
Query: 338 EFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNT 397
+ + +C ++L + + +L E + + + L
Sbjct: 500 --------FDEMVFKCPPVNALIHYRIIISTYMSASLLYAEDVSHGHF---SHIFLDEAG 548
Query: 398 GAADP----LIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH- 452
A++P + L T D V +LAGDQ QL PVI S+KA E G+GVS +ER
Sbjct: 549 QASEPETMIPVSHLCTSDTV---VVLAGDQLQLGPVIYSKKADEYGLGVSYMERLCECEL 605
Query: 453 ----EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQC 508
+ T+L YR + I SK Y G LI+ S +++
Sbjct: 606 YASGDTNYVTRLIRNYRCHPVILHLPSKLFYCGELIACRDSKSFMVIGD----------- 654
Query: 509 PLLLLDTRLP---YGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAG-VSPSAI 564
LL + P YG GC+E S++N EA V+ V LI G + I
Sbjct: 655 --LLPNKDFPIIFYG--IQGCDER--EGNNPSWFNRIEASKVIEVVRRLIAGGNIKEENI 708
Query: 565 AVQSPYVAQVQHLRERLD--DLPEAAGVEVATIDSFQGREADAVIISMVRS-------NT 615
+ +PY QV +++ L+ D+PE ++V +++ FQG+E + +IIS VRS +
Sbjct: 709 GIITPYRQQVLKIKQTLENLDMPE---IKVGSVEQFQGQEKEVIIISTVRSTIKHNEFDR 765
Query: 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
+ +GFL + RR NVAITRA + ++ + IC + +++L H
Sbjct: 766 VHCLGFLSNYRRFNVAITRAISLLVIIGNPHIICKDDHWSQMLWH 810
>gi|440291801|gb|ELP85043.1| splicing endonuclease positive effector sen1, putative [Entamoeba
invadens IP1]
Length = 1569
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 143/479 (29%), Positives = 216/479 (45%), Gaps = 89/479 (18%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA-------------RAVQQG 279
K F+DSQ A+ L K +IQGPPGTGKT L II +
Sbjct: 276 KEFNDSQIHAMFRSL-AKSGFSLIQGPPGTGKTMTLCGIIGVILYGNSSSVFSKSSESHH 334
Query: 280 ERVLVTAPTNAAVDNMVEKLSDVG----------LNIVRVGNPARISPAVASKSLGEIVK 329
ERVL+ +P+NAA+D ++ KL +G + IVRVG P +P + L +V
Sbjct: 335 ERVLICSPSNAAIDGIIMKLLKMGVYDENGEKKSVKIVRVGTPTLTNPEIKDLVLENLVG 394
Query: 330 SKL---ASFVAEF-ERKKSDLRKDLRQCL------KDDSLAAGIRQLLKQ----LGKTLK 375
++ E+ ++K ++L++ L+ L D L +G+ LLKQ K
Sbjct: 395 KEIERRGEMSLEYLDKKINELKEKLKNALATNAKINKDKLKSGLALLLKQKDDLQNKICA 454
Query: 376 KKEKETVKEVLSSAQVVLAT-NTGAADPLIRRL----------------DTFDLVG---- 414
K T+ +++S+ V+ T N+ D L + L + L+
Sbjct: 455 MKHSVTI-DIISNCDVICCTLNSAGCDTLQQHLFGKIETCIIDEAVQCVEVSALIPLKYG 513
Query: 415 -KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASW 473
+RCI+ GDQ QL +LS K++ SL ER L G+ T LT QYRM I +
Sbjct: 514 VERCIMIGDQKQLPSTVLSPKSITYKYNKSLFERL--LECGLNVTLLTQQYRMESKIREF 571
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S E Y G L + V +L L+ C + L
Sbjct: 572 PSNEFYEGRLADGVKIEKINSVSN-----------SVLFLNV----------CGKEDRLG 610
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAGVS--PSAIAVQSPYVAQVQHLRERLD--DLPEAAG 589
S +N E + VV + + I V I + +PY QV +++ ++ ++ ++
Sbjct: 611 KESSLFNTEEVKAVV-FLLTEISKNVECVHWDIGIITPYRKQVLDVKKAIEQNEVAKSLN 669
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
V V T+D FQGRE D VI+S VRS+ +GF+ D RR+NVAITRA + + VV + T+
Sbjct: 670 VLVNTVDGFQGREFDIVIMSCVRSSEHNGIGFVEDERRLNVAITRAKRALCVVGNIKTL 728
>gi|409074520|gb|EKM74916.1| hypothetical protein AGABI1DRAFT_123471 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 937
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 146/488 (29%), Positives = 223/488 (45%), Gaps = 81/488 (16%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR---AVQQGERVLVTAPTN 289
K + SQ KA+A + K+ + ++QGPPGTGKT + E I + +LV TN
Sbjct: 387 KHLNKSQIKAMATMIGKR--ISLVQGPPGTGKTKTIVETIKLLKLHFEVSHPILVCTYTN 444
Query: 290 AAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIV-KSKLASFVAE-------FER 341
AVDN++E + GL +RVG +RI ++ SL ++ K L + E E
Sbjct: 445 VAVDNLLEGFAKAGLKPLRVGFGSRIRASLQEYSLDHLLLKHPLQPLLLETIALLDKMEE 504
Query: 342 KKSDLRKDLRQCLKD---DSLAAGIRQLLKQLGKTLKKKEK--------------ETVKE 384
+ S L +R LK + +A + Q ++ + + + K++ E + +
Sbjct: 505 EISQLGALIRDTLKKIEGKTPSAAMEQRVRNMSQAMGMKDRRRNELRAKKYGLQQEMLHD 564
Query: 385 VLSSAQVVLATNTGAADPLIRRLDTFDLV-------------------GKRCI-LAGDQC 424
++ SA VV +T +A + D F +V G R + L GD
Sbjct: 565 IVKSADVVCSTCITSASSALNVAD-FPVVFVDEASMSTEPATLIPIMKGSRHLALIGDHK 623
Query: 425 QLAPVILSRKALEGGIGVSLLERAATLHEGVL-ATKLTTQYRMNDAIASWASKEMYGGSL 483
QL PVI+S++A G+ VSL ER EG++ + L QYRM+ I+ + S E Y S+
Sbjct: 624 QLPPVIVSQEARAQGLAVSLFERLT--EEGIVPSVMLDIQYRMHPRISHFPSLEFYNSSI 681
Query: 484 ISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF----- 538
+T +V P +T LL D S S LD G +
Sbjct: 682 QDGTTDKDGNVV-VGLEPPMSLTH---LLQDGNHEGQSRSRPSVIFLDHFGYETMSGRSR 737
Query: 539 YNEGEAEIVVHHVFSLICAG--VSPSAIAVQSPYVAQV--------------QHLRERLD 582
N EA+IVV V L+ + I + +PYVAQ+ + RE L
Sbjct: 738 VNHHEAQIVVSLVEDLLLQNPQLRGQDIGIIAPYVAQINLLNRLLTTDVRNGERFREVLG 797
Query: 583 D--LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
+ + + VEV T+D F+GRE + ++ S VR+N G +GFL D RR+NV +TRA + +
Sbjct: 798 NQRYRDMSDVEVKTVDGFEGREKEVIVFSTVRNNDSGRIGFLADRRRLNVGLTRAKRGLF 857
Query: 641 VVCDSSTI 648
VV TI
Sbjct: 858 VVGGMRTI 865
>gi|308198102|ref|XP_001386840.2| DEAD-box type RNA helicase [Scheffersomyces stipitis CBS 6054]
gi|149388861|gb|EAZ62817.2| DEAD-box type RNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 1999
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 149/554 (26%), Positives = 244/554 (44%), Gaps = 113/554 (20%)
Query: 215 EENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR 274
E +++D +KL I + SQ KAI +G +IQGPPGTGKT + I+
Sbjct: 1264 EPVEISDAEAMKLLNIYD--VNKSQAKAI-IGSYNSEGFSLIQGPPGTGKTKTILGIVGY 1320
Query: 275 AVQQ-----------------------GERVLVTAPTNAAVDNMVEKLSDVGLN------ 305
++ Q +VL+ AP+NAAVD +V +L D N
Sbjct: 1321 SLSQQVDEKIIIKIDQGNGNVISGNEKKPKVLICAPSNAAVDELVVRLRDGVRNSRGEHI 1380
Query: 306 ---IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE-----------RKKSDLRKDLR 351
+VR+G I+ AV +L E+V+ +L + + K + R +LR
Sbjct: 1381 IPKLVRMGRSDAINAAVKDLTLEELVEKELQAKAMNTDTSTDPNIRAEHSKCIEERDNLR 1440
Query: 352 QCLKDDSLAA--------GIRQLLK---QLGKTLK-KKEKETVK-------------EVL 386
+ L+ DSL++ +R++ K +LGK L ++E+ ++ ++L
Sbjct: 1441 RKLQTDSLSSKEIDELESALREINKKRTELGKQLDLQRERVSIAYRTREIERRNAQAKIL 1500
Query: 387 SSAQVVLATNTGAADPLIRRLD-TFDLV--------------------GKRCILAGDQCQ 425
+ AQ++ +T +G+A + + TFD V K+CI+ GD Q
Sbjct: 1501 NDAQIICSTLSGSAHDFLANMGITFDQVVIDEACQCVELSSIIPLRYGCKKCIMVGDPNQ 1560
Query: 426 LAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLIS 485
L P +LS+ A SL R + + L QYRM+ I+++ S + Y L
Sbjct: 1561 LPPTVLSQAAASFNYEQSLFVRMQQNNPNSVYL-LDVQYRMHPQISAFPSAQFYQSRLKD 1619
Query: 486 SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAE 545
+A+ + P W +Q PL PY + H + S +N GEA
Sbjct: 1620 GEGMAAK--NERP-----WHSQYPLS------PYRFFDI-VSRHQRNELSRSLFNTGEAR 1665
Query: 546 I---VVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE---RLDDLPEAAGVEVATIDSFQ 599
+ +V + +L+ I + SPY Q++ LR+ + ++ T+D FQ
Sbjct: 1666 VALELVEKLMTLLPEDQFSGRIGIISPYKEQIKTLRDVFIKKYGYSITTQIDFNTVDGFQ 1725
Query: 600 GREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
G+E + +I+S VR++ G VGFL D RRMNVA+TRA + ++ + ++ N +LL
Sbjct: 1726 GQEKEIIIMSCVRASDNGNVGFLSDVRRMNVALTRARTTLWILGNKESLMRNKIWNKLLT 1785
Query: 660 HIRYFGRVKHAEPG 673
V A PG
Sbjct: 1786 DATDRNCVSQAYPG 1799
>gi|366992642|ref|XP_003676086.1| hypothetical protein NCAS_0D01420 [Naumovozyma castellii CBS 4309]
gi|342301952|emb|CCC69723.1| hypothetical protein NCAS_0D01420 [Naumovozyma castellii CBS 4309]
Length = 1301
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 123/418 (29%), Positives = 210/418 (50%), Gaps = 64/418 (15%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
+I G PG+GKT ++ EII V QG+ +L+T+ T++AVDN++ KL+++ +NI+R+G+P +
Sbjct: 856 LILGMPGSGKTTVIAEIIKILVSQGKSILLTSYTHSAVDNILLKLNELNINIMRLGSPHK 915
Query: 315 ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAA----GIRQLLKQL 370
++ ++ ++ K+ + + + + S+ A GI+ +L
Sbjct: 916 -------------THAQTRQYLPNYDSIKT--YDEFLEMINNVSVVATTCLGIQDVL--- 957
Query: 371 GKTLKKKEKETVKEVLSSA-QVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPV 429
TL+KK+ + V +L A Q+ + G PL G + I+ GD QL P+
Sbjct: 958 -FTLRKKDFDYV--ILDEASQISIPVALG---PL--------RFGNKFIMVGDHYQLPPL 1003
Query: 430 ILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTV 489
I + A GG+ SL + + +LT QYRM I + ++ +Y L +
Sbjct: 1004 IKNEAARIGGLEESLF-KVFCERQPQSVIELTYQYRMCGDIVTLSNLLIYENKLKCGTEE 1062
Query: 490 ASHLLVDTPFVKP-----------TWITQCPLLLLDTR-----LPYGSLSLGCEEHLDLA 533
+ + P ++P +W+T +LD + L Y + + CE++
Sbjct: 1063 VFNQKMIIPQIEPLTHFKENKKSQSWLTD----ILDPKKKVLFLDYDNCTSICEQY---- 1114
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVA 593
+ + N GE EIV V ++ GVS I V + Y AQ++ L++ + + G+E+
Sbjct: 1115 ESDNVTNMGENEIVRQCVEGMLQCGVSSENIGVMTLYRAQLRLLQKTFNSM-YFQGLEIL 1173
Query: 594 TIDSFQGREADAVIISMVRSNT-LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICH 650
T D FQGR+ D +IISMVRSN+ L L + RR+NVA+TRA + +V TIC+
Sbjct: 1174 TADQFQGRDKDCIIISMVRSNSQLNGGSLLKELRRVNVAMTRAKSKLIIVGSKKTICN 1231
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,624,427,728
Number of Sequences: 23463169
Number of extensions: 445578137
Number of successful extensions: 1595886
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4026
Number of HSP's successfully gapped in prelim test: 3701
Number of HSP's that attempted gapping in prelim test: 1571461
Number of HSP's gapped (non-prelim): 15626
length of query: 690
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 540
effective length of database: 8,839,720,017
effective search space: 4773448809180
effective search space used: 4773448809180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)