BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038763
(690 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 323 bits (827), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 256/698 (36%), Positives = 361/698 (51%), Gaps = 104/698 (14%)
Query: 13 LDEFTQRMSELLRIERDAELEFT---QEELNAVPTPDENSDSSKPIEFLVSHGRAPQELC 69
++ F + +LL +ERDAE+E QE ++ ++ L S G +C
Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENIS--------------LKELQSRG-----VC 46
Query: 70 DTICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSC 126
+ L V S TGL G LV F R LP + + GD+V + + G+ +
Sbjct: 47 --LLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLATG 104
Query: 127 IQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLL 186
I V +++VA + H D S S R+ + LA+ +TY R +AL+ L
Sbjct: 105 ILTRVTQK-----SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIAL 155
Query: 187 QKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALG 246
+K + P+ + + LFG + + SE+ D SQK+A+
Sbjct: 156 KK---YHSGPASSLIEVLFG---------RSAPSPASEIHPLTFFNTCLDTSQKEAVLFA 203
Query: 247 LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
L++K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I
Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262
Query: 307 VRVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSL 359
+R+G+PAR+ ++ SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 LRLGHPARLLESIQQHSLDAVLARSDSAQIVA-------DIRKDIDQVFVKNKKTQDKRE 315
Query: 360 AAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV--- 413
+ R +K L K LK++E+ + E L+SA VVLATNTGA AD ++ L FD+V
Sbjct: 316 KSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVID 375
Query: 414 ----------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA 457
++CILAGD QL P +S KA G+ +SL+ER A + +
Sbjct: 376 ECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVV 435
Query: 458 TKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRL 517
LT QYRM+ AI WAS MY G L + S+VA HLL D P V T T PLLL+DT
Sbjct: 436 RTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDT-- 493
Query: 518 PYGSLSLGCE----EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
GC E D G N GE +V H+ +L+ AGV IAV SPY Q
Sbjct: 494 ------AGCGLFELEEEDEQSKG---NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQ 544
Query: 574 VQHLRERL-DDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAI 632
V LR+ L PE +E+ ++D FQGRE +AVI+S VRSN G VGFL + RR+NVA+
Sbjct: 545 VDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAV 601
Query: 633 TRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
TRA +HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 602 TRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 319 bits (818), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 247/694 (35%), Positives = 360/694 (51%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + +LL +ERDAE+E + + E+S + L S G +C
Sbjct: 4 STVESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LRELQSRG-----VC- 46
Query: 71 TICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V S TGL G LV F + LP + + GD+V + + AT +
Sbjct: 47 -LLKLQVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLATGVL 105
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+++VA + H +L R+ LA+ +TY+R +ALM L+
Sbjct: 106 TRITQK------SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G +E L+ ++ T D SQK+A++ L
Sbjct: 156 K---YHSGPASSLIDILLGSSTPSPAMEIPPLSFYN---------TTLDLSQKEAVSFAL 203
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K L II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+
Sbjct: 204 AQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKRIL 262
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D
Sbjct: 263 RLGHPARLLESVQHHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREK 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV---- 413
R +K L K LK++E+ + + L++A VVLATNTGA+ D ++ L D FD+V
Sbjct: 316 GNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVDE 375
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S +A G+ SL+ER A H +
Sbjct: 376 CAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVVR 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ MY G S +VA HLL D P V T T+ PLLL+DT
Sbjct: 436 MLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDT--- 492
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV L
Sbjct: 493 -----AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLL 547
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AV+++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 RQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRAR 604
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RHVAVICDSHTVNNHAFLETLVDYFTEHGEVRTA 638
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 245/694 (35%), Positives = 358/694 (51%), Gaps = 93/694 (13%)
Query: 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCD 70
S ++ F + ELL +ERDAE+E + + E+S ++ L S G +C
Sbjct: 4 STVESFVAQQLELLELERDAEVEERR-------SWQEHSS----LKELQSRG-----VC- 46
Query: 71 TICNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCI 127
+ L V S TGL G LV F ++ LP + + GD+V + + AT +
Sbjct: 47 -LLKLQVSSQCTGLYGQRLVTFEPRKLGPVVVLPSNSFTSGDIVGLYDANESSQLATGVL 105
Query: 128 QGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQ 187
+++VA + H +L R+ LA+ +TY+R +ALM L+
Sbjct: 106 TRITQK------SVTVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155
Query: 188 KNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247
K + P+ + + L G + + +E+ D SQK+A++ L
Sbjct: 156 K---YHSGPASSLIDVLLGG---------SSPSPTTEIPPFTFYNTALDPSQKEAVSFAL 203
Query: 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIV 307
+K + II GPPGTGKT + EII +AV+QG ++L AP+N AVDN+VE+L+ I+
Sbjct: 204 AQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERLALCKKRIL 262
Query: 308 RVGNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLA 360
R+G+PAR+ + SL ++ +S A VA D+RKD+ Q +D
Sbjct: 263 RLGHPARLLESAQQHSLDAVLARSDNAQIVA-------DIRKDIDQVFGKNKKTQDKREK 315
Query: 361 AGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA-ADPLIRRL--DTFDLV---- 413
+ R +K L K LK++E+ + + L++A VVLATNTGA +D ++ L + FD+V
Sbjct: 316 SNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPENHFDVVVVDE 375
Query: 414 ---------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLAT 458
+CILAGD QL P +S KA G+ SL+ER H
Sbjct: 376 CAQALEASCWIPLLKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAVR 435
Query: 459 KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLP 518
LT QYRM+ AI WAS+ MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 436 MLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT--- 492
Query: 519 YGSLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHL 577
GC LD + S N GE +V H+ +L+ AGV IAV +PY QV L
Sbjct: 493 -----AGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLL 547
Query: 578 RERLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRAC 636
R+ L + PE +E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA
Sbjct: 548 RQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRAR 604
Query: 637 KHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
+HVAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 605 RHVAVICDSRTVNNHAFLKTLVDYFTEHGEVRTA 638
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 305 bits (780), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 240/692 (34%), Positives = 350/692 (50%), Gaps = 93/692 (13%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
++ F + +LL +ERDAE+E + + E+S ++ L S G +C +
Sbjct: 6 VESFVAQQLQLLELERDAEVEERR-------SWQEHSS----LKELQSRG-----VC--L 47
Query: 73 CNLFVVSTSTGLGGMHLVLF---RVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQG 129
L V TGL G LV F + LP + + GD+V + + AT +
Sbjct: 48 LKLQVSGQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNESSQLATGVLTR 107
Query: 130 FVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKN 189
++ VA + H +L R+ LA+ +TY+ L
Sbjct: 108 ITQK------SVIVAFDESHD----FQLNLDRENTYRLLKLANDVTYK---RLKKALLTL 154
Query: 190 GLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNK 249
+ P+ + + L G + + +E+ T D SQK+A++ L +
Sbjct: 155 KKYHSGPASSLIDVLLGG---------STPSPATEIPPLTFYNTTLDPSQKEAVSFALAQ 205
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309
K + II GPPGTGKT + EII +AV+QG +VL AP+N AVDN+VE+L+ I+R+
Sbjct: 206 KE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKKQILRL 264
Query: 310 GNPARISPAVASKSLGEIV-KSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAG 362
G+PAR+ +V SL ++ +S A VA D+R+D+ Q +D +
Sbjct: 265 GHPARLLESVQQHSLDAVLARSDNAQIVA-------DIRRDIDQVFGKNKKTQDKREKSN 317
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-DPLIRRL--DTFDLV------ 413
R +K L K LK++E+ + + LS+A VVLATNTGA+ D ++ L D FD+V
Sbjct: 318 FRNEIKLLRKELKEREEAAIVQSLSAADVVLATNTGASTDGPLKLLPEDYFDVVVVDECA 377
Query: 414 -------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
+CILAGD QL P +S KA G+ SL+ER A H + L
Sbjct: 378 QALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLAEKHGAAVVRML 437
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ AI WAS+ MY G L + +VA HLL D P V T T PLLL+DT
Sbjct: 438 AVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT----- 492
Query: 521 SLSLGCE-EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
GC L+ + S N GE +V H+ +L+ AGV IAV +PY QV LR+
Sbjct: 493 ---AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQ 549
Query: 580 RLDDL-PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKH 638
L + PE +E+ ++D FQGRE +AVI++ VRSN G VGFL + RR+NVA+TRA +H
Sbjct: 550 SLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRH 606
Query: 639 VAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670
VAV+CDS T+ ++ FL L+ + G V+ A
Sbjct: 607 VAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 638
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 249 bits (637), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 202/659 (30%), Positives = 318/659 (48%), Gaps = 86/659 (13%)
Query: 29 DAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVSTSTGLGGMH 88
D E+EF E + E S P+ L G A + NL + TG GG
Sbjct: 20 DREIEFVDEAQKSEVDETEKSIKRFPLSVLQRKGLA-------LINLRIGVVKTGFGGKT 72
Query: 89 LVLFRVE----GNHRLPPTTLSPGDMVCVR-----VCDSRGACATSCIQGFVHNLGEDGC 139
++ F + LP + SPGD+V +R R ++G V + E
Sbjct: 73 IIDFEKDPAFSNGEELPANSFSPGDVVSIRQDFQSSKKKRPNETDISVEGVVTRVHERH- 131
Query: 140 TISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIA 199
ISVAL+S P+ SV + L + +TYER ++ +++ RN +
Sbjct: 132 -ISVALKSEEDIPS-------SVTRLSVVKLVNRVTYERMRHTMLEFKRSIPEYRN---S 180
Query: 200 AVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGP 259
TL G K+ +++ + D K + SQKKA+ + K L +I GP
Sbjct: 181 LFYTLIGRKKADVSIDQKLIGDIK------YFNKELNASQKKAVKFSIAVKE-LSLIHGP 233
Query: 260 PGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAV 319
PGTGKT L EII + V + +R+LV +N AVDN+V++LS G+ +VR+G+PAR+ P++
Sbjct: 234 PGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRLSSSGIPMVRLGHPARLLPSI 293
Query: 320 ASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL------KDDSLAAGIRQLLKQLGKT 373
SL + ++ V + +D+ CL K+ I + +++L K
Sbjct: 294 LDHSLDVLSRTGDNGDVIR------GISEDIDVCLSKITKTKNGRERREIYKNIRELRKD 347
Query: 374 LKKKEKETVKEVLSSAQVVLATNTGAADPLIR--RLDT---------------FDLVG-K 415
+K E +TV ++S+++VV T GA ++ R D L+G
Sbjct: 348 YRKYEAKTVANIVSASKVVFCTLHGAGSRQLKGQRFDAVIIDEASQALEPQCWIPLLGMN 407
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWAS 475
+ ILAGD QL+P + S++ +S+ ER ++ L QYRM++ I+ + S
Sbjct: 408 KVILAGDHMQLSPNVQSKRPY-----ISMFERLVKSQGDLVKCFLNIQYRMHELISKFPS 462
Query: 476 KEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA-G 534
Y L+ + V LL+D V+ T +T P+ DT LG + D +
Sbjct: 463 DTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDT--------LGNYQEDDRSED 514
Query: 535 TGSFY-----NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
+FY N EA+IV +H+ L+ AG+ IAV +PY AQV +R+ L + +
Sbjct: 515 MQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKE--KGIE 572
Query: 590 VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
VE+ ++D QGRE +A+I S+VRSN + VGFL + RR+NVAITR +H+ V+ DS+T+
Sbjct: 573 VEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTV 631
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 158/473 (33%), Positives = 247/473 (52%), Gaps = 56/473 (11%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLV 284
+ + +DSQK AI +N L II GPPGTGKT L E+I + + + ER+L+
Sbjct: 200 IKSFLNPNLNDSQKTAINFAINND--LTIIHGPPGTGKTFTLIELIQQLLIKNPEERILI 257
Query: 285 TAPTNAAVDNMVEKLSDVGLN--IVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK 342
P+N +VD ++E+L+ + N ++R+G+PAR+ + SL + SK + V + ++
Sbjct: 258 CGPSNISVDTILERLTPLVPNNLLLRIGHPARLLDSNKRHSLD--ILSKKNTIVKDISQE 315
Query: 343 KSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAA-- 400
L ++ ++ LK+ +K L K LKK+E +T+K+++ +++V+ T G++
Sbjct: 316 IDKLIQENKK-LKNYKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSR 374
Query: 401 --------DPLIRRLDTF--DLVGK------------------RCILAGDQCQLAPVILS 432
DP + DT D V + + +LAGD QL P I +
Sbjct: 375 ELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTIKT 434
Query: 433 R--KALEGGIGVSLLERAATLHEGVLATK-LTTQYRMNDAIASWASKEMYGGSLISSSTV 489
K + + +L +R + K L QYRMN I + S MY G L++ +TV
Sbjct: 435 EDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADATV 494
Query: 490 ASHLLVDTPFVKPTWI-----TQCPLLLLDTRLPYGSLSLGCEEHLDLAGT-GSFYNEGE 543
A+ LL+D P V T T+ PL+ DT+ G +E D A GS YNEGE
Sbjct: 495 ANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQ---GD---EFQETADEATILGSKYNEGE 548
Query: 544 AEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREA 603
IV H+ +L V ++I V SPY AQV HL++ + D + +E++T+D FQGRE
Sbjct: 549 IAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREK 608
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 654
D +I+S+VRSN VGFL + RR+NVA+TR + + VV + + C N +L
Sbjct: 609 DVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYL 661
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 155/460 (33%), Positives = 226/460 (49%), Gaps = 65/460 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A++ L +RPL +IQGPPGTGKT I+ + +R+LV AP+N AVD
Sbjct: 409 LNSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVD 466
Query: 294 NMVEKLSDVGLNIVRVGNPAR--ISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR 351
++ KL D+GL +VR+ +R + +V++ +L +V K +L+ L+
Sbjct: 467 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRG----------AKGELKNLLK 516
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT-F 410
LKD+ + +L K K ++T E+L+ A VV T GA D +RLDT F
Sbjct: 517 --LKDE-----VGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDTKF 566
Query: 411 DLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAAT 450
V K+ IL GD QL PVIL RKA + G+ SL ER +
Sbjct: 567 RTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLIS 626
Query: 451 LHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPL 510
L G + +L QYRMN ++ + S Y GSL + T+ + ++ F P I P+
Sbjct: 627 L--GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWP--IRGIPM 682
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
+ YG E + GT SF N EA + L GV P I V +PY
Sbjct: 683 MFWAN---YG------REEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732
Query: 571 VAQVQHLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q ++ + + D VEVA++D+FQGRE D +I+S VR+N A+GFL D
Sbjct: 733 EGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDP 792
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 665
RR+NV +TRA + ++ + ++ NT LL H R G
Sbjct: 793 RRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 193 bits (490), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 149/452 (32%), Positives = 216/452 (47%), Gaps = 79/452 (17%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
++P+ +IQGPPGTGKT I+ +QG+ +VLV AP+N AVD + EK+S GL +VR
Sbjct: 502 QKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVR 561
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFE------RKKSDLRKDLRQCLKDDSLAAG 362
+ +R E V S + ++ +KS+L K Q LKD+
Sbjct: 562 LCAKSR-----------EAVSSPVEYLTLHYQVRHLDTSEKSELHK--LQQLKDEQ---- 604
Query: 363 IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD----------- 411
+L K K ++ T +E+ SA V+ T GAAD RL F
Sbjct: 605 -GELSSSDEKKYKNLKRATEREITQSADVICCTCVGAAD---LRLSNFRFRQVLIDESTQ 660
Query: 412 -----------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKL 460
L K+ +L GD CQL PVI+ +KA G+ SL ER TL G+ +L
Sbjct: 661 ATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL--GIKPIRL 718
Query: 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYG 520
QYRM+ A++ + S Y G+L + T+ F P + P+
Sbjct: 719 QVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWP--VPNRPMFFY------- 769
Query: 521 SLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQH---- 576
+ LG EE + +GT S+ N EA V V + + +GV PS I V +PY Q +
Sbjct: 770 -VQLGQEE-ISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNY 826
Query: 577 ------LRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
LR++L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 827 MARNGSLRQQL-----YKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNV 881
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ + + LL H +
Sbjct: 882 ALTRARYGIVILGNPKVLSKQPLWNGLLTHYK 913
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 190 bits (483), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 142/437 (32%), Positives = 215/437 (49%), Gaps = 55/437 (12%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310
PL +IQGPPGTGKT II A +VLV AP+N AVD + E++ GL +VR+
Sbjct: 471 PLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLCERIHRTGLKVVRLT 530
Query: 311 NPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKDLRQCLKDDSLAAGIRQLLKQ 369
+R E V+S + SF+A E+ + + K+L +K L +L Q
Sbjct: 531 AKSR-----------EDVESSV-SFLALHEQVRMNTTNKELDGLVK---LKTETGELSSQ 575
Query: 370 LGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV---------------- 413
K K+ ++ +E+L +A VV T GA DP + ++ +++
Sbjct: 576 DEKRFKQLTRQAEREILQNADVVCCTCVGAGDPRLSKMKFRNVLIDESTQSAEPECMIPL 635
Query: 414 ---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
K+ +L GD QL PVI+++KA + G+ SL ER L +L QYRM+ +
Sbjct: 636 VLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLQ--FTPIRLKVQYRMHPCL 693
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL 530
+ + S Y GSL + T A L D F P + + P++ +LG EE +
Sbjct: 694 SEFPSNMFYEGSLQNGVTAAERLRKDVDFPWP--VPETPMMFWS--------NLGNEE-I 742
Query: 531 DLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL-----P 585
+GT S+ N EA V V AGV P+ I V +PY Q ++ + +
Sbjct: 743 SASGT-SYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKE 801
Query: 586 EAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645
VEVA++D+FQGRE D +++S VRSN +GFL D RR+NVA+TRA + ++ +
Sbjct: 802 SYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNP 861
Query: 646 STICHNTFLARLLRHIR 662
+C + LL H +
Sbjct: 862 KVLCKHELWHHLLVHFK 878
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 212/442 (47%), Gaps = 61/442 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 495 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 554
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 555 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 603
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 604 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 656
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 657 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 714
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+
Sbjct: 715 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------- 763
Query: 526 CEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD--- 582
+E + +GT S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 764 GQEEIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSG 822
Query: 583 --DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVA 640
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 823 SLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVI 882
Query: 641 VVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 883 IVGNPKALSKQPLWNHLLNYYK 904
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 213/443 (48%), Gaps = 63/443 (14%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 490 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 549
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E + S ++ + + D +L+ Q LKD++ L++
Sbjct: 550 LCAKSR-----------EAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADE 598
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLV----------- 413
+ + L +T ++ E+L +A V+ T GA DP + ++ ++
Sbjct: 599 KRYRALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPE 651
Query: 414 --------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYR 465
K+ IL GD CQL PV++ +KA + G+ SL ER L G+ +L QYR
Sbjct: 652 CMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYR 709
Query: 466 MNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLG 525
M+ A++++ S Y GSL + T A + F P P+ T+ G
Sbjct: 710 MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ--PDKPMFFYVTQ--------G 759
Query: 526 CEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLD-- 582
EE +A +G S+ N EA V L+ AG P I + +PY Q +L + +
Sbjct: 760 QEE---IASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFS 816
Query: 583 ---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639
VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V
Sbjct: 817 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 876
Query: 640 AVVCDSSTICHNTFLARLLRHIR 662
+V + + LL + +
Sbjct: 877 IIVGNPKALSKQPLWNHLLSYYK 899
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 139/457 (30%), Positives = 215/457 (47%), Gaps = 64/457 (14%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVD 293
+ SQ A+ L +RPL +IQGPPGTGKT I+ + V+ G VLV AP+N AVD
Sbjct: 452 LNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPSNTAVD 509
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR-- 351
+ EK+ L +VRV +R E + S ++ + + + +L+
Sbjct: 510 QLTEKIHRTNLKVVRVCAKSR-----------EAIDSPVSFLALHNQIRNMETNSELKKL 558
Query: 352 QCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFD 411
Q LKD++ +L K + ++ ++L +A V+ T GA D + R+
Sbjct: 559 QQLKDET-----GELSSADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFTS 613
Query: 412 LV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLH 452
++ K+ IL GD CQL PV++ +KA G+ SL ER L
Sbjct: 614 ILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL- 672
Query: 453 EGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL-VDTPFVKPTWITQCPLL 511
G+ +L QYRM+ ++ + S Y GSL + L +D P+ +P + P+
Sbjct: 673 -GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQP----ERPMF 727
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTG-SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY 570
L T+ G EE +AG+G SF N EA V + AG+ P I + +PY
Sbjct: 728 FLVTQ--------GQEE---IAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQIGIITPY 776
Query: 571 VAQVQHLRERLDDLPEAAG-----VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDS 625
Q +L + + +E+A++D+FQGRE D +I+S VRSN +GFL D
Sbjct: 777 EGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDP 836
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
RR+NVA+TRA + +V + + LL +
Sbjct: 837 RRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNFYK 873
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 183/703 (26%), Positives = 325/703 (46%), Gaps = 125/703 (17%)
Query: 13 LDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTI 72
+D + ++ +L+ IER E++F + E+ + EN GRA I
Sbjct: 14 VDLYVKKFMDLIEIERRCEMDFHKNEIIKLGKKRENV------------GRA-------I 54
Query: 73 CNLFVVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVH 132
NL LG +V F G + T +SPGD+V V S+ S + V
Sbjct: 55 LNLKGKFLGESLGCT-IVRF---GRKKPFKTEISPGDVVLV----SKENPLQSDLYANVI 106
Query: 133 NLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLH 192
+G++ ++ ++ P + ++ + VR+D + +T++R EAL
Sbjct: 107 YVGKNFIDVAFDVDV----PKW--VYKERVRVDL---YVNDITFKRMKEAL-----REFA 152
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRP 252
++ +A ++ G + L E+ +KL+ K ++SQK A+ + R
Sbjct: 153 RKRDKLAYII--LGIEHPEKPLRED-------IKLE-FYDKNLNESQKLAVKKAV-LSRD 201
Query: 253 LLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKL--SDVGLNIVRV 309
L +I GPPGTGKT + E+I + V+ +VL TA +N A DN++E L L +VRV
Sbjct: 202 LYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNIAADNILEYLIKKYPDLKVVRV 261
Query: 310 GNPARISPAVASKSLGEIVKSK--------LASFVAEFERKKSDLRK---DLRQCLKDD- 357
G+P RIS + SL ++++ L + E + ++ K R+ + D+
Sbjct: 262 GHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIKEQRDKFLKPSPRWRRGMSDEQ 321
Query: 358 --------------------SLAAGI--RQLLKQLGKTLKKKEKETVKEVLSSAQVVLAT 395
S+A I + +K++ L + ++ + E+L+ A V++AT
Sbjct: 322 ILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNLDEITEKIMNEILAEADVIVAT 381
Query: 396 NTGAADPLIRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKAL 436
N+ A +++ + FD++ G++ I+AGD QL P +LS
Sbjct: 382 NSMAGSEILKGWE-FDVIVIDEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTVLSENE- 439
Query: 437 EGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVD 496
+ +L ER + ++ L QYRMN+ I + +K Y L + +V + L+D
Sbjct: 440 --ELKKTLFERLIKKYPE-FSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLD 496
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
VK I + +++ +P +++ E D + S+YN EAE V+ V L+
Sbjct: 497 --LVKEEEIDEVDRDIINE-IPVQFINVEGIERKD-KESPSYYNIEEAEKVLEIVKKLVK 552
Query: 557 AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
+ + I +PY AQV++LR ++ +EV T+D FQGRE +A++IS VR+
Sbjct: 553 YKIPTNVI---TPYDAQVRYLRRLFEE--HNIDIEVNTVDGFQGRENEAIVISFVRTKNF 607
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
GFL D RR+NVAITRA + + ++ + + + + +++
Sbjct: 608 ---GFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIK 647
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 138/452 (30%), Positives = 204/452 (45%), Gaps = 82/452 (18%)
Query: 252 PLLIIQGPPGTGKTGLLKEII---ARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
PL +IQGPPGTGKT + II + V+ ++VLV P+N A+D + KL ++GL +VR
Sbjct: 552 PLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTPSNVAIDQLTGKLHEIGLKVVR 611
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAG----IR 364
+ S L E V S + +Q K D + G +R
Sbjct: 612 L-----------SSKLREEVASPVEHLTLH------------KQVYKLDQMGDGELGKLR 648
Query: 365 QLLKQLGKTLKKKEKETVK-------EVLSSAQVVLATNTGAADPLIRRLDTFDLV---- 413
+L + G + EK + +L A V+ AT GA DP RL F
Sbjct: 649 KLKEAFGSLSNEDEKRYIYLRRMMEMAILRKADVICATCVGAGDP---RLSQFRFPHILI 705
Query: 414 ------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
K+ IL GD QL PV+L +K ++ G+ SL ER +L G
Sbjct: 706 DESTQASEPECLIPLMMGAKQVILVGDHRQLGPVLLCKKVVDAGLSQSLFERLISL--GH 763
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
+LT QYRM+ ++ + S Y G L+S SH D+ P + P+ +
Sbjct: 764 HPERLTIQYRMHPSLTEFPSNTSYEGQLVSE---LSHTDRDSQSKFPWPQPKDPMFFFNC 820
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
G EE + +GT SF N EA I V + G P I + +PY Q
Sbjct: 821 --------TGSEE-ISSSGT-SFINTTEASICEKIVTKFLELGSLPGQIGIITPYEGQRA 870
Query: 576 HLRERLD-----DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNV 630
++ + +L +EVA++DSFQGRE D +I+S VRSN +GFL D RR+NV
Sbjct: 871 YITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRLNV 930
Query: 631 AITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
A+TRA + ++ ++ + + L+ H +
Sbjct: 931 ALTRARFGLIILGNAKVLSKDPLWNSLISHFK 962
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 223/460 (48%), Gaps = 70/460 (15%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVD 293
+ SQ +A+ L RPL +IQGPPGTGKT + I+ VQ+ E VLV +P+N AVD
Sbjct: 446 LNSSQMQAVKQVLT--RPLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVD 503
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERK---KSDLRKDL 350
++ EK+ GL +VR+ +R E ++ + + + K ++L+K +
Sbjct: 504 HLAEKIHKTGLKVVRLCARSR-----------EHSETTVPYLTLQHQLKVMGGAELQKLI 552
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
+ LKD+ AG + L K+ KE E+L++A V+ T + AAD + ++ T
Sbjct: 553 Q--LKDE---AGELEFKDDLRYMQLKRVKE--HELLAAADVICCTCSSAADARLSKIRTR 605
Query: 411 DLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL 451
++ ++ +L GD CQL PV++ +KA G+ SL ER L
Sbjct: 606 TVLIDESTQATEPEILVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL 665
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL--VDTPFVKPTWITQCP 509
G+ +L QYRM+ ++ + S Y GSL + T + VD + KP
Sbjct: 666 --GIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWPKPN------ 717
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAV--- 566
P E L +GT SF N EA V V LI AGV P I V
Sbjct: 718 -------KPAFFWHCSGSEELSASGT-SFLNRTEAANVEKLVSKLIKAGVQPHQIGVITS 769
Query: 567 ---QSPYVAQVQHLRERLDD-LPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFL 622
Q ++ H + L+ L E VE+A++D+FQGRE D +I++ VRSN + +GFL
Sbjct: 770 YEGQRSFIVNYMHTQGTLNSKLYE--NVEIASVDAFQGREKDYIIVTCVRSNDILGIGFL 827
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D RR+NVAITRA + +V ++ + + L+ H +
Sbjct: 828 SDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYK 867
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 172 bits (436), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 152/488 (31%), Positives = 229/488 (46%), Gaps = 81/488 (16%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII-------ARAVQQGERVLVTAPTNA 290
SQ +A+ L+K PL +IQGPPGTGKT ++ +R + VLV AP+N
Sbjct: 396 SQSEAVRAVLSK--PLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPVLVCAPSNV 453
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFER-KKSDLRKD 349
AVD + EK+ GL +VRV A+KS +I S SF++ E+ K +
Sbjct: 454 AVDQLAEKIHRTGLRVVRV----------AAKSREDIESS--VSFLSLHEQIKNYKFNPE 501
Query: 350 LRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
L++ LK L + +L Q K L+ KE+L +A V+ T GA D RR+
Sbjct: 502 LQRLLK---LRSENNELSIQDEKKLRILVAAAEKELLRAAHVICCTCVGAGD---RRISK 555
Query: 410 FD----------------------LVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
+ L K+ +L GD QL PV++++K + SL ER
Sbjct: 556 YKFRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMNKKVALASLSQSLFER 615
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL----ISSSTVASHLLVDTPFVKPT 503
L G +L QYRM+ ++ + S Y G+L +S +A H VD P+++P
Sbjct: 616 LIIL--GNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARH--VDFPWIQP- 670
Query: 504 WITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA 563
PL+ Y + +E L +GT SF N EA V + + + V P
Sbjct: 671 ---DSPLMF------YANFG---QEELSASGT-SFLNRTEASTCEKIVTTFLRSNVLPEQ 717
Query: 564 IAVQSPYVAQ----VQHLRER---LDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTL 616
I + +PY Q VQ+++ DL +A VEVA++D+FQGRE D +I+S VRS+
Sbjct: 718 IGIVTPYDGQRSYIVQYMQNNGSMQKDLYKA--VEVASVDAFQGREKDFIILSCVRSSEH 775
Query: 617 GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFG 676
+GF+ D RR+NVA+TRA V V+ + + + + H + G + S
Sbjct: 776 QGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKEKGYLVEGTLNSLQ 835
Query: 677 GSGLGMDP 684
L + P
Sbjct: 836 KFSLTLTP 843
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 130/440 (29%), Positives = 209/440 (47%), Gaps = 59/440 (13%)
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVR 308
+RPL +IQGPPGTGKT I+ +QG VLV AP+N AVD + EK+ GL +VR
Sbjct: 466 QRPLSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVR 525
Query: 309 VGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLR--QCLKDDS--LAAGIR 364
+ +R E ++S ++ + D +L+ Q LKD++ L++
Sbjct: 526 LCAKSR-----------EAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGELSSADE 574
Query: 365 QLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRL--------DTFDLVGKR 416
+ + L +T ++ E+L +A V+ T A DP + ++ ++ +
Sbjct: 575 KRYRALKRTAER-------ELLMNADVIWCTCVRAGDPRLAKMQFRSILIDESTQATEPK 627
Query: 417 CI----LAGDQCQLAPV------ILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRM 466
CI L Q L + ++ +KA + G+ SL ER L G+ +L QYRM
Sbjct: 628 CIGPVELGAKQLILGEITASWSCVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRM 685
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
+ A++++ S Y GSL + T + F P + P+ T+
Sbjct: 686 HPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQ--PEKPMFFYVTQ---------G 734
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ----VQHLRERLD 582
+E + +GT S+ N EA V L+ AG P I + +PY Q VQ+++
Sbjct: 735 QEEIASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGS 793
Query: 583 DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVV 642
+ VE+A++D+FQGRE D +I+S VR+N +GFL D RR+NVA+TRA V +V
Sbjct: 794 LHTKLYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIV 853
Query: 643 CDSSTICHNTFLARLLRHIR 662
+ + LL + +
Sbjct: 854 GNPKALSKQPLWNNLLNNYK 873
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 200/437 (45%), Gaps = 78/437 (17%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDN 294
+ QK+A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AVDN
Sbjct: 627 LNKPQKQAMKRVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDN 685
Query: 295 MVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCL 354
++ KL + +R+G ++ P V S EI K+K
Sbjct: 686 ILLKLKKFQVGFLRLGRTQKLHPDVQEFSEEEICKAKSIK-------------------- 725
Query: 355 KDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLI--RRLDTFDL 412
SL+A ++E+ +S VV T G P+ RR D F +
Sbjct: 726 ---SLSA--------------------LEELYNSQPVVATTCMGVNHPIFTRRRFD-FCI 761
Query: 413 VGK-----------------RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGV 455
V + R +L GD QL P++ S +A E G+ SL +R E V
Sbjct: 762 VDEASQISQPICLGPLFFADRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQEAV 821
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI------TQCP 509
+ +LT QYRMN I + ++K +Y G L +S S+ +V P +K + +Q
Sbjct: 822 V--QLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRESQES 879
Query: 510 LLLLDTRLPYGSLSLGCEEH---LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAV 566
+ + D P + E L+ G N EA++V H + AG PS I +
Sbjct: 880 MWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPSDIGI 939
Query: 567 QSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FLGDS 625
+PY Q++ + + L A+ VEV T+D +QGR+ +I+S VRSN G +G L D
Sbjct: 940 IAPYRQQLKMISNYFNSL-SASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDLLKDW 998
Query: 626 RRMNVAITRACKHVAVV 642
RR+NVA+TRA KH ++
Sbjct: 999 RRLNVALTRA-KHKLIM 1014
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 134/472 (28%), Positives = 208/472 (44%), Gaps = 105/472 (22%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 624 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAV 682
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN++ KL+ + +R+G ++ PA+ + EI +SK +A E
Sbjct: 683 DNILLKLAKFKIGFLRLGQIQKVHPAIQQFTEQEICRSKSIKSLALLE------------ 730
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
E+ +S +V T G P+ R FD
Sbjct: 731 -------------------------------ELYNSQLIVATTCMGINHPIFSR-KIFDF 758
Query: 413 -------------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
+R +L GD QL P++L+R+A G+ SL +R
Sbjct: 759 CIVDEASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKS 818
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV------------------ 495
V+ +LT QYRMN I S ++K Y G L S ++ ++
Sbjct: 819 AVV--QLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADY 876
Query: 496 -DTPFVKPTWITQCPLLLLDT-RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFS 553
D P++ + P+ L+T ++P E ++ G N EA+++V
Sbjct: 877 SDNPWLMGVFEPNNPVCFLNTDKVP-------APEQVEKGGVS---NVTEAKLIVFLTSI 926
Query: 554 LICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG-VEVATIDSFQGREADAVIISMVR 612
+ AG SPS I + +PY Q++ + D L + G VEV T+D +QGR+ V++S VR
Sbjct: 927 FVKAGCSPSDIGIIAPYRQQLKIIN---DLLARSIGMVEVNTVDKYQGRDKSIVLVSFVR 983
Query: 613 SNTLGAVG-FLGDSRRMNVAITRACKHVAVV--CDSSTICHNTFLARLLRHI 661
SN G VG L D RR+NVAITRA KH ++ C S C+ L +LL H+
Sbjct: 984 SNKDGTVGELLKDWRRLNVAITRA-KHKLILLGCVPSLNCYPP-LEKLLNHL 1033
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 126/459 (27%), Positives = 200/459 (43%), Gaps = 78/459 (16%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 624 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAV 682
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN++ KL+ + +R+G ++ P + + EI +SK +A E
Sbjct: 683 DNILLKLAKFKIGFLRLGQIQKVHPDIQKFTEEEICRSKSIKSLALLE------------ 730
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
E+ +S +V T G P+ R TFD
Sbjct: 731 -------------------------------ELYNSQLIVATTCMGINHPIFSR-KTFDF 758
Query: 413 -------------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
+R +L GD QL P++L+R+A G+ SL +R
Sbjct: 759 CIVDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKRLEQNKN 818
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWI-------- 505
V+ +LT QYRMN I S ++K Y G L S ++ +++ P K +
Sbjct: 819 AVV--QLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYADY 876
Query: 506 TQCPLLL--LDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA 563
++ P L+ + P L+ + G N EA++VV I AG PS
Sbjct: 877 SENPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKAGCKPSD 936
Query: 564 IAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVG-FL 622
I + +PY Q++ + + L VEV T+D +QGR+ V++S VRSN G +G L
Sbjct: 937 IGIIAPYRQQLKVISDLLAQ-SSVGMVEVNTVDRYQGRDKSIVVVSFVRSNEDGTLGELL 995
Query: 623 GDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
D RR+NVAITRA + ++ ++ L +LL H+
Sbjct: 996 KDWRRLNVAITRAKHKLILLGCVPSLSRYPPLRKLLNHL 1034
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 197/437 (45%), Gaps = 52/437 (11%)
Query: 245 LGLNKKRPLLIIQGPPG---TGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301
LG+N + ++ G G T L E++ + + RVLV AP+N+A+D +V +L
Sbjct: 337 LGVNPRDAIMPEDGDDGFFPTSGNELKPEVVNASRKYRLRVLVCAPSNSALDEIVLRLLS 396
Query: 302 VGL----------NIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKD-L 350
GL IVR+G A S VAS SL +V K S + + ++ + D +
Sbjct: 397 SGLRDENAQTYTPKIVRIGLKAHHS--VASVSLDHLVAQKRGSAIDKPKQGTTGTDIDSI 454
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410
R + ++ AA + L G L K +V+ + A PL R
Sbjct: 455 RTAILEE--AAIVFATLSFSGSALLAKSNRGF-DVVIIDEAAQAVEPATLIPLATRC--- 508
Query: 411 DLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAI 470
K+ L GD QL ++S A + G G S+ ER G L TQYRM+ I
Sbjct: 509 ----KQVFLVGDPKQLPATVISTVAQDSGYGTSMFERLQ--KAGYPVKMLKTQYRMHPEI 562
Query: 471 ASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW-ITQC--PLLLLDTRLPYGSLSLGCE 527
S+ SK+ Y G+L S + + D W +C P D S G
Sbjct: 563 RSFPSKQFYEGALEDGSDIEAQTTRD-------WHKYRCFGPFCFFDIHEGKESQHPGA- 614
Query: 528 EHLDLAGTGSFYNEGEAEIVV---HHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDL 584
TGS N E E V+ H + ++ S S +A+ SPY QV+ ++R ++
Sbjct: 615 -------TGSRVNLDEVEFVLLIYHRLVTMYPELKSSSQLAIISPYNYQVKTFKDRFKEM 667
Query: 585 --PEAAG-VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAV 641
EA V++ T+D FQGRE D I S VR+N G +GFL +SRRMNV ITRA V V
Sbjct: 668 FGTEAEKVVDINTVDGFQGREKDVAIFSCVRANENGQIGFLSNSRRMNVGITRAKSSVLV 727
Query: 642 VCDSSTICHNTFLARLL 658
V ++T+ + L+
Sbjct: 728 VGSAATLKSDPLWKNLI 744
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 227 LDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII 272
L+ + + SQK+AI +GL++K ++IQGPPGTGKT + I+
Sbjct: 250 LNEFFNENLNKSQKEAIDVGLSRKS-FVLIQGPPGTGKTQTILSIL 294
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 205/467 (43%), Gaps = 96/467 (20%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + Q++A+ L K LI+ G PGTGKT + ++ G VL+T+ T++AV
Sbjct: 624 KGLNKPQRQAMKKVLLSKDYTLIV-GMPGTGKTTTICALVRILSACGFSVLLTSYTHSAV 682
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN++ KL+ + +R+G ++ P + + E+ + + + +A E
Sbjct: 683 DNILLKLAKFKIGFLRLGQSHKVHPDIQKFTEEEMCRLRSIASLAHLE------------ 730
Query: 353 CLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
E+ +S VV T G + P+ R TFD
Sbjct: 731 -------------------------------ELYNSHPVVATTCMGISHPMFSR-KTFDF 758
Query: 413 -------------------VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE 453
+R +L GD QL P++L+R+A G+ SL +R
Sbjct: 759 CIVDEASQISQPICLGPLFFSRRFVLVGDHKQLPPLVLNREARALGMSESLFKRLERNES 818
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSL-ISSSTVASHLLV----------------D 496
V+ +LT QYRMN I S ++K Y G L S VA+ ++ D
Sbjct: 819 AVV--QLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADYSD 876
Query: 497 TPFVKPTWITQCPLLLLDT-RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI 555
P++ + P+ L+T ++P E ++ G N EA ++V + I
Sbjct: 877 NPWLAGVFEPDNPVCFLNTDKVP-------APEQIE---NGGVSNVTEARLIVFLTSTFI 926
Query: 556 CAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
AG SPS I + +PY Q++ + + L VEV T+D +QGR+ +++S VRSN
Sbjct: 927 KAGCSPSDIGIIAPYRQQLRTITDLLAR-SSVGMVEVNTVDKYQGRDKSLILVSFVRSNE 985
Query: 616 LGAVG-FLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHI 661
G +G L D RR+NVAITRA + ++ S++ L +L H+
Sbjct: 986 DGTLGELLKDWRRLNVAITRAKHKLILLGSVSSLKRFPPLEKLFDHL 1032
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 156/609 (25%), Positives = 258/609 (42%), Gaps = 101/609 (16%)
Query: 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVAL 145
G +L F+ N +P T L GD + + + R A S +G+V + + T +
Sbjct: 495 GQYLHNFQ-RKNGPMPATNLMAGDRIILS-GEERKLFALS--KGYVKKMNKAAVTCLL-- 548
Query: 146 ESRHGDPTFSKLFGKSV-RIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPS--IAAVV 202
D S L +V R+DR + D T N LM +PS + ++
Sbjct: 549 -----DRNLSTLPATTVFRLDREERHGDISTPLGNLSKLM-------ESTDPSKRLRELI 596
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGT 262
F + + + +L D + + + G + Q++A+ L K LI+ G PGT
Sbjct: 597 IDFREPQFIAYLSSVLPHDAKDTVANILKG--LNKPQRQAMKRVLLSKDYTLIV-GMPGT 653
Query: 263 GKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASK 322
GKT + ++ G VL+T+ T++AVDN++ KL+ + +R+G ++ P +
Sbjct: 654 GKTTTICALVRILSACGFSVLLTSYTHSAVDNILLKLAKFKVGFLRLGQSHKVHPDIQKF 713
Query: 323 SLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETV 382
+ EI +S+ + +A E
Sbjct: 714 TEEEICRSRSIASLAHLE------------------------------------------ 731
Query: 383 KEVLSSAQVVLATNTGAADPLIRRLDTFDL-------------------VGKRCILAGDQ 423
E+ +S +V T G P+ R TFD +R +L GD
Sbjct: 732 -ELYNSHPIVATTCMGINHPIFSR-KTFDFCIVDEASQISQPVCLGPLFFSRRFVLVGDH 789
Query: 424 CQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL 483
QL P++++R+A G+ SL +R V+ +LT QYRMN I S ++K Y G L
Sbjct: 790 QQLPPLVVNREARALGMSESLFKRLERNESAVV--QLTVQYRMNRKIMSLSNKLTYAGKL 847
Query: 484 ISSSTVASHLLVDTPFVKPTWIT--------QCPLL--LLDTRLPYGSLSLGCEEHLDLA 533
S ++ ++ P +K ++ P L +L+ P L+ +
Sbjct: 848 ECGSDRVANAVLALPNLKDARLSLQLYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQV 907
Query: 534 GTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVA 593
G N EA ++V + I AG SPS I V +PY Q++ + + L VEV
Sbjct: 908 ENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIISDLLAR-SSVGMVEVN 966
Query: 594 TIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVVCDSSTICHNT 652
T+D +QGR+ +++S VRSN G +G L D RR+NVA+TRA + ++ S++
Sbjct: 967 TVDKYQGRDKSLILVSFVRSNEDGTLGELLKDWRRLNVALTRAKHKLILLGSVSSLKRFP 1026
Query: 653 FLARLLRHI 661
L L H+
Sbjct: 1027 PLGTLFDHL 1035
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 131/439 (29%), Positives = 190/439 (43%), Gaps = 70/439 (15%)
Query: 249 KKRPLLIIQGPPGTGKTGLLKEIIAR--AVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306
K P +I GPPGTGKT L E I + Q+ RVLV AP+N+A D+++EKL + L
Sbjct: 412 KGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKL--LCLEG 469
Query: 307 VRVGNPARISPAVASKSLGEIVKSKLA-SFVAEFERKKSDLRKDLRQCLKDDSL------ 359
VR+ + A++S EI + F E K L+ R L +
Sbjct: 470 VRIKDNEIFRLNAATRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLL 529
Query: 360 -AAGIRQ------LLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL 412
A G+ + LL + G+ + + V + + VV
Sbjct: 530 NAEGVNRGHFTHILLDEAGQASEPENMIAVSNLCLTETVV-------------------- 569
Query: 413 VGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER---AATLHEG--VLATKLTTQYRMN 467
+LAGD QL PVI SR A G+G S LER EG TKL YR +
Sbjct: 570 -----VLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCH 624
Query: 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCE 527
I SK Y G L++S +L F+ P + P++ + GC+
Sbjct: 625 PEILDLPSKLFYDGELVASKEDTDSVLASLNFL-PN--KEFPMVFYGIQ--------GCD 673
Query: 528 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAG-VSPSAIAVQSPYVAQVQHLRERLDDLPE 586
E S++N E V+ + L V I V +PY QV ++E LD L +
Sbjct: 674 ER--EGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRL-D 730
Query: 587 AAGVEVATIDSFQGREADAVIISMVRS-------NTLGAVGFLGDSRRMNVAITRACKHV 639
V+V +++ FQG+E +IIS VRS + +GFL + RR NVAITRA +
Sbjct: 731 MTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLL 790
Query: 640 AVVCDSSTICHNTFLARLL 658
++ + IC + +LL
Sbjct: 791 VIIGNPHIICKDMNWNKLL 809
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 126/430 (29%), Positives = 206/430 (47%), Gaps = 50/430 (11%)
Query: 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293
T + +QK+AI + + LI+ G PGTGKT ++ EII V +G+RVL+T+ T++AVD
Sbjct: 1051 TLNLNQKEAIDKVMRAEDYALIL-GMPGTGKTTVIAEIIKILVSEGKRVLLTSYTHSAVD 1109
Query: 294 NMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQC 353
N++ KL + ++I+R+G ++ P +V + KS D
Sbjct: 1110 NILIKLRNTNISIMRLGMKHKVHPDT-------------QKYVPNYASVKS--YNDYLSK 1154
Query: 354 LKDDSLAA----GIRQLLKQLGKTLKKKEKETVKEVLSSA-QVVLATNTGAADPLIRRLD 408
+ S+ A GI +L TL +K+ + V +L A Q+ + G PL
Sbjct: 1155 INSTSVVATTCLGINDIL----FTLNEKDFDYV--ILDEASQISMPVALG---PL----- 1200
Query: 409 TFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
G R I+ GD QL P++ + A GG+ SL + H +A +LT QYRM
Sbjct: 1201 ---RYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPESVA-ELTLQYRMCG 1256
Query: 469 AIASWASKEMYGGSLI--SSSTVASHLLVDTPFVKPTWITQ---CPLLLLDTRLPYGSLS 523
I + ++ +Y L ++ A L + P + + L D P +
Sbjct: 1257 DIVTLSNFLIYDNKLKCGNNEVFAQSLELPMPEALSRYRNESANSKQWLEDILEPTRKVV 1316
Query: 524 L----GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRE 579
C + ++ + + N GEAE+ + V ++ +GV I V + Y AQ++ L+
Sbjct: 1317 FLNYDNCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCEDIGVMTLYRAQLRLLK- 1375
Query: 580 RLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT-LGAVGFLGDSRRMNVAITRACKH 638
++ + G+E+ T D FQGR+ +IISMVR N+ L L + RR+NVA+TRA
Sbjct: 1376 KIFNKNVYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGALLKELRRVNVAMTRAKSK 1435
Query: 639 VAVVCDSSTI 648
+ ++ STI
Sbjct: 1436 LIIIGSKSTI 1445
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 148/536 (27%), Positives = 234/536 (43%), Gaps = 121/536 (22%)
Query: 233 KTFDDSQKKAI--ALGLNKKRP----LLIIQGPPGTGKT----GLLKEIIARAVQQGE-- 280
+ F++ QKKAI A + K P + +I GPPGTGK+ GLL ++ ++G
Sbjct: 1932 RDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSD 1991
Query: 281 ----------RVLVTAPTNAAVDNMVEK---------------LSDVG-LNIVRVGNPAR 314
RVLV AP+NAAVD +++K L + G +N+VR+G
Sbjct: 1992 ENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKS 2051
Query: 315 ISPAVASKSLGEIV----KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ- 369
I+ V SL V K +L S V ++K L L + + +L G R++ +Q
Sbjct: 2052 INSEVLKFSLDSQVNHRMKKELPSHVQAMHKRKEFLDYQLDELSRQRALCRGGREIQRQE 2111
Query: 370 LGKTLKKKEKE------TVKEVLSSAQ-----------VVLATNTGAADPLIR------- 405
L + + K KE +KEV Q ++ T + + L+
Sbjct: 2112 LDENISKVSKERQELASKIKEVQGRPQKTQSIIILESHIICCTLSTSGGLLLESAFRGQG 2171
Query: 406 ----------------RLDTFDLVGKRC---ILAGDQCQLAPVILSRKALEGGIGVSLLE 446
++T + RC IL GD QL P ++S KA E G S++
Sbjct: 2172 GVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMA 2231
Query: 447 RAATLHEGVLAT---------KLTTQYRMNDAIASWASKEMYGGSLISS-STVASHLLVD 496
R L E + +LT QYRM+ I + S +Y +L ++ T A D
Sbjct: 2232 RFCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSD 2291
Query: 497 TPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC 556
PF P L+ D + G E S+ N E ++V+ + LI
Sbjct: 2292 WPFQ--------PYLVFD-------VGDGSERR----DNDSYINVQEIKLVME-IIKLIK 2331
Query: 557 ---AGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG-VEVATIDSFQGREADAVIISMVR 612
VS I + + Y AQ +++ LD + G EV T+D+FQGR+ D VI++ VR
Sbjct: 2332 DKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVR 2391
Query: 613 SNTL-GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRV 667
+N++ G++GFL +R+NV ITRA + ++ T+ N +L++ + G +
Sbjct: 2392 ANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGAI 2447
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 140/555 (25%), Positives = 226/555 (40%), Gaps = 132/555 (23%)
Query: 234 TFDDSQKKAI--ALGLNKKRPLLI-----------IQGPPGTGKT----GLLKEIIARAV 276
F D +K+ I + G+N+ + I IQGPPGTGKT G++ ++ +
Sbjct: 1256 NFTDDKKQKIMKSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSS 1315
Query: 277 Q-------------QGERVLVTAPTNAAVDNMVEKLS---------DVGLNIVRVGNPAR 314
Q ++L+ AP+NAA+D ++ ++ ++RVG
Sbjct: 1316 QGLQFNVPGQTRKTSKNKILICAPSNAAIDEILLRIKAGVYDHEGIKFFPKVIRVGFGDS 1375
Query: 315 ISPAVASKSLGE--IVKSKLASFVAEFE-------RKKSD--------LRKDL---RQCL 354
IS +L E I + +L + + E RKK D LR+DL R
Sbjct: 1376 ISVHAKEFTLEEQMIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSLREDLEKFRSTG 1435
Query: 355 KDDS-LAAGIRQLLKQ-----------------LGKTLKKKEKETVKEVLSSAQVVLATN 396
K+ S L A +R++ KQ + L +K+ ++L A +V AT
Sbjct: 1436 KNSSILEAQLREITKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQLLQEADIVCATL 1495
Query: 397 TGAADPLIRRLD-TFDLV--------------------GKRCILAGDQCQLAPVILSRKA 435
+ + L+ TF V + C++ GD QL P +LS+ +
Sbjct: 1496 SASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPLKYGCESCVMVGDPNQLPPTVLSKTS 1555
Query: 436 LEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLV 495
+ G SL R H A L+ QYRMN I+ + SK Y L+ +++
Sbjct: 1556 AKFGYSQSLYVRMFKQHNES-ACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNMSA---- 1610
Query: 496 DTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF------YNEGEAEIVVH 549
+ +R + LG ++ GT +F YN EA ++
Sbjct: 1611 -----------------VTSRPWHEDPQLGIYRFFNVHGTEAFSNSKSLYNVEEASFILL 1653
Query: 550 HVFSLICAGVS---PSAIAVQSPYVAQVQHLRERLDDLPEA---AGVEVATIDSFQGREA 603
LI ++ I V +PY +QVQ LR + + +++ T+D FQG+E
Sbjct: 1654 LYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEK 1713
Query: 604 DAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRY 663
D +I S VRS+ G +GFL D RR+NVA+TRA + +V +S + L+ +
Sbjct: 1714 DIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKT 1773
Query: 664 FGRVKHAEPGSFGGS 678
G + F S
Sbjct: 1774 RGVWRDLSANQFKNS 1788
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/507 (26%), Positives = 208/507 (41%), Gaps = 111/507 (21%)
Query: 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA------------------RAVQ 277
++ Q KAI L+ +IQGPPGTGKT + II+ ++ +
Sbjct: 1131 NEPQAKAIMCALDNN-GFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQSKSTE 1189
Query: 278 QGERVLVTAPTNAAVDNMVEKLSDVGL---------NIVRVGNPARISPAVASKSLGEIV 328
+++L+ AP+NAAVD ++ +L L +VR+GNP I+ +V SL
Sbjct: 1190 SKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPRVVRIGNPETINVSVRDLSLEYQT 1249
Query: 329 KSKLASF---------VAEFERKKS---DLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKK 376
+ +L + E R + D + + + K +A + + K LGK L+
Sbjct: 1250 EKQLLEVNQGAIDLGSLQELTRWRDTFYDCIQKIEELEKQIDVARDVAEDTKSLGKELQN 1309
Query: 377 K----------------------------EKETVKEVLSSAQVVLATNTGAADPLIRR-- 406
K K+ K +L A VV AT +G+ L+
Sbjct: 1310 KINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDLVAHSS 1369
Query: 407 ----------------LDT---FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER 447
LDT K+CIL GD QL P +LS+KA SL R
Sbjct: 1370 LNFSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLSKKAASLNYSQSLFVR 1429
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
+ L+ QYRM+ I+ + SK+ Y L +A V P TQ
Sbjct: 1430 IQKNFSNQMCL-LSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEK-TQQVWHVNPK-FTQ 1486
Query: 508 CPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSA---I 564
L D R G E + T S YN E E +V+ V L+ + I
Sbjct: 1487 --YRLFDVR--------GKER---TSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRI 1533
Query: 565 AVQSPYVAQVQHLRERLD---DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGF 621
V +PY +Q+ LR + +++ T+D FQG+E D + S V+S + +GF
Sbjct: 1534 GVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGF 1593
Query: 622 LGDSRRMNVAITRACKHVAVVCDSSTI 648
L D RR+NVA+TRA + ++ + T+
Sbjct: 1594 LRDFRRLNVALTRARSSLLIIGNMETL 1620
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 209/449 (46%), Gaps = 81/449 (18%)
Query: 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGER-------------VLVTAPTNAAVDNMVEK 298
P+ II G G GK+ LL +I VQ E+ +L+++ TN AVD ++
Sbjct: 470 PITIIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLG 529
Query: 299 LSDVGL-NIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDD 357
L +G N +RVG+ +I+ + SL A E + L K+L +K+D
Sbjct: 530 LLSLGFENFIRVGSVRKIAKPILPYSLH-----------AGSENESEQL-KELHALMKED 577
Query: 358 SLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGKRC 417
L R ++ K++++ + T + +L +VV T P + L +V C
Sbjct: 578 -LTPTERVYVR---KSIEQHKLGTNRTLLKQVRVVGVTCAACPFPCMNDLKFPVVVLDEC 633
Query: 418 --------------------ILAGDQCQLAPVIL-SRKALEGGIGVSLLERAATL-HEGV 455
IL GD QL P I S A E G+ +L +R + H+ +
Sbjct: 634 SQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCLMGHKPI 693
Query: 456 LATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDT 515
L L TQYR + AI++ A+ Y G+L++ T I + PLL
Sbjct: 694 L---LRTQYRCHPAISAIANDLFYKGALMNGVTE---------------IERSPLLEWLP 735
Query: 516 RLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQ 575
L + ++ G E+ + SF+N EA + + SLI +G++ S I V + Y +Q+
Sbjct: 736 TLCFYNVK-GLEQ---IERDNSFHNVAEATFTLKLIQSLIASGIAGSMIGVITLYKSQMY 791
Query: 576 ---HLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVA 631
HL +D P+ V+V+T+D+FQG E + +I+S VR+ VGF+ +RMNVA
Sbjct: 792 KLCHLLSAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTR---QVGFIDSEKRMNVA 848
Query: 632 ITRACKHVAVVCDSSTICHNTFLARLLRH 660
+TR +H+ +V + + + N R+++H
Sbjct: 849 LTRGKRHLLIVGNLACLRKNQLWGRVIQH 877
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 160/637 (25%), Positives = 261/637 (40%), Gaps = 131/637 (20%)
Query: 89 LVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESR 148
L+L V G P+ L GD + + R + +G+VH + + + +
Sbjct: 368 LLLLNVPGVAENRPSVLR-GDHLFASLSSERDSSPRVLYKGYVHGVELERVQLGFS---- 422
Query: 149 HGDPTFSKLFGKSVRIDRIQGLADTLTYER------NCEALMLLQKNGLHKRNPSIAAVV 202
P K F ++ D T T+ R + A M +QK PS +
Sbjct: 423 ---PKLMKKFVNDLKFD------VTFTFNRLPLQVQHRAAAMAMQKGLDSVLFPSASCQR 473
Query: 203 TLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGLNKKRPLLIIQGPPGT 262
+LF W + A+ E + + K I G+++ P LI GPPGT
Sbjct: 474 SLFTGIFQPRWFDRKVEAN--EEQCQAV----------KHIVTGMSRPAPYLIF-GPPGT 520
Query: 263 GKTGLLKEIIARAVQ--QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVA 320
GKT L E I + + R+L AP+N+A D + ++L + N +A
Sbjct: 521 GKTVTLVEAIKQVWSCFKDARILACAPSNSAADLLCQRL---------LTN-------IA 564
Query: 321 SKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLK-DDSLAAGIRQLLKQLGKTLKKKEK 379
+ + I+ S A++ D+ D+R C DDS + K L K +
Sbjct: 565 PRYIYRIMASS-ANY--------KDVPADVRPCCNWDDSEKCYVYP-----SKKLLKPYR 610
Query: 380 ETVKEVLSSAQVVLATNTG-------------AADP--------LIRRLDT-FDLVGKRC 417
+ ++++ ++V A A +P L+ +D + G +
Sbjct: 611 ILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVVAIAGLLTTMDPDTNPNGGQL 670
Query: 418 ILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLA-----------TKLTTQYRM 466
+LAGD QL PV S A + G+G SLLER LH + A TKL YR
Sbjct: 671 VLAGDPQQLGPVPRSPLAAQHGLGTSLLERL-MLHNALYAKSDEGYNPQFVTKLLWNYRS 729
Query: 467 NDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGC 526
+ AI ++ Y L + P V+ + T L + + + C
Sbjct: 730 HKAILKVPNELFYDSELKAYEG-------SEPDVRNFYCTWEELPNRGVPIIFHGV---C 779
Query: 527 EEHLDLAGTGSFYNEGEAEIVVHHVFSLI-------CAGVSPSAIAVQSPYVAQVQHLR- 578
E A + SF+N E E+VV ++ L+ C +SP I + SPY QV+ +R
Sbjct: 780 GEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRL 839
Query: 579 ------ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRS-------NTLGAVGFLGDS 625
L LP+ ++V +++ FQG+E ++IS VRS + +GFL +
Sbjct: 840 AITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNP 899
Query: 626 RRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
+R+NVA+TRA + VV +++ + + R LR+ R
Sbjct: 900 KRLNVALTRAKALLIVVGNAAVLSKDPHWHRFLRYCR 936
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 147/542 (27%), Positives = 236/542 (43%), Gaps = 120/542 (22%)
Query: 233 KTFDDSQKKAI--ALGLNKKRP----LLIIQGPPGTGKT----GLLKEIIARAVQQGE-- 280
K F++ QKKAI A + K P + +I GPPGTGK+ GLL ++ ++G
Sbjct: 1908 KDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSD 1967
Query: 281 ----------RVLVTAPTNAAVDNMVEK---------------LSDVG-LNIVRVGNPAR 314
RVLV AP+NAAVD +++K L + G +N+VR+G
Sbjct: 1968 ENFNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKS 2027
Query: 315 ISPAVASKSLGEIV----KSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQ- 369
I+ V SL V K L S + E R+K L L + + +L G R++ +Q
Sbjct: 2028 INTEVLKFSLDSQVNHRMKKDLPSHIQEMLRRKEILDAQLDELSRQRALCRGGREMQRQE 2087
Query: 370 LGKTLKKKEKE------TVKEVLSSAQ-----------VVLATNTGAADPLIR------- 405
L + + KE +KEV Q V+ T + + L+
Sbjct: 2088 LDEHIAIVSKERQELASKIKEVQGRPQRAQNTIILESHVICCTLSTSGGLLLESAFRGQG 2147
Query: 406 ----------------RLDTFDLVGKRC---ILAGDQCQLAPVILSRKALEGGIGVSLLE 446
++T + RC IL GD QL P ++S KA E G S++
Sbjct: 2148 GVPFSCVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMA 2207
Query: 447 RAATLHE--------GVLAT-KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDT 497
R L E G L +LT QYRM+ I + S +Y +L ++ L ++
Sbjct: 2208 RFCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNL------KTNRLTES 2261
Query: 498 PFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC- 556
W Q P L+ D + G E S+ N E ++V+ + LI
Sbjct: 2262 IRCSSEWPFQ-PYLVFD-------VGDGSERR----DNDSYINVQEIKLVME-IIKLIKE 2308
Query: 557 --AGVSPSAIAVQSPYVAQVQHLRERLD-DLPEAAGVEVATIDSFQGREADAVIISMVRS 613
+S I + + Y AQ +++ L+ + + EV T+D+FQGR+ D +I++ VR+
Sbjct: 2309 KRKDISFRNIGIITHYKAQKTMIQKDLEKEFDKKGPAEVDTVDAFQGRQKDCIIVTCVRA 2368
Query: 614 NTL-GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGR-VKHAE 671
+ + G++GFL +R+NV ITRA + ++ T+ N L++ + G +K ++
Sbjct: 2369 SAVQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWYELIQDAQKRGAIIKTSD 2428
Query: 672 PG 673
P
Sbjct: 2429 PN 2430
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 198/428 (46%), Gaps = 70/428 (16%)
Query: 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR 314
+I G PGTGKT + +I + + +++L+T+ T+ AVDN++ KL IVR+G+P +
Sbjct: 951 LILGMPGTGKTTTISSLIRSLLAKKKKILLTSFTHLAVDNILIKLKGCDSTIVRLGSPHK 1010
Query: 315 ISPAVASKSLGE-IVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLG-- 371
I P V L E LAS L+ +D + A LG
Sbjct: 1011 IHPLVKEFCLTEGTTFDDLAS---------------LKHFYEDPQIVA-----CSSLGVY 1050
Query: 372 KTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVIL 431
++ K K + ++Q+ L G PL + ++ +L GD QL P++
Sbjct: 1051 HSIFNKRKFDYCIIDEASQIPLPICLG---PL--------QLAEKFVLVGDHYQLPPLVK 1099
Query: 432 SRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI-SSSTVA 490
+ + + G+ +SL + + H + T L QYRMN+ I S +S+ +YGG+L+ S T++
Sbjct: 1100 NSRTSKDGLSLSLFKLLSEKHPEAVTT-LRLQYRMNEDINSLSSELIYGGNLVCGSKTIS 1158
Query: 491 SHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHL-------------DLAGTGS 537
L+ P L LP S SL L D+ G S
Sbjct: 1159 QKKLI------------LPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDILGVES 1206
Query: 538 -----FYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEV 592
N EA ++ V S + GV S+I + S Y +QV+ L + L E +E+
Sbjct: 1207 KTNNILENHTEAFLIEQAVSSFLERGVKQSSIGIISIYKSQVELLSKNLKSFTE---IEI 1263
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
T+D +QGR+ D ++IS VRSN+ VG L D R+NVA++RA + ST+ +
Sbjct: 1264 NTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLNVALSRAKVKCIMFGSLSTLSSS 1323
Query: 652 TFLARLLR 659
++ LL+
Sbjct: 1324 NIVSHLLK 1331
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 197/446 (44%), Gaps = 60/446 (13%)
Query: 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAV 292
K + QK+A+ L + LI+ G PGTGKT + ++ G VL+T+ T+ AV
Sbjct: 593 KGLNKPQKQAMKQVLLSRDYTLIV-GMPGTGKTTTICALVRILSACGFSVLLTSFTHTAV 651
Query: 293 DNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQ 352
DN++ KL+ + +R+G ++ P + + EI +SK V + E +
Sbjct: 652 DNILLKLAKFKVGFLRLGRAQKVHPDIRKFTEEEICRSKSIKSVTDLEELYNSQPVVATA 711
Query: 353 CLKDDSLAAGIRQLL---KQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDT 409
C+ GI + KQ + V ++Q+ G PL
Sbjct: 712 CM-------GINHPIFVQKQFDFCI----------VDEASQISQPICLG---PL------ 745
Query: 410 FDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDA 469
KR +L GD QL P++ + +A + G+ SL +R V+ +LT QYRMN
Sbjct: 746 --FCSKRFVLVGDHQQLPPLVQNSEARDLGMSESLFKRLEQNQNAVV--QLTVQYRMNSK 801
Query: 470 IASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEH 529
I S ++K +Y G L S S+ + P +K +L S + +E
Sbjct: 802 IMSLSNKLVYEGKLECGSEKVSNATANLPNLK----------MLKLEFADASKTW-LKEV 850
Query: 530 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAG 589
L+ F N +A G PS I + SPY Q++ + + + L E
Sbjct: 851 LEPDKPVCFLNTEKA-------------GCRPSDIGIISPYRHQLKVITDLMARLKENR- 896
Query: 590 VEVATIDSFQGREADAVIISMVR-SNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
VEV TID +QGR+ +I+S VR SN L D RR+NVAITRA + +V ++
Sbjct: 897 VEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAITRAKHKLIMVGCVPSL 956
Query: 649 CHNTFLARLLRHIRYFGRVKHAEPGS 674
L +LL H++ + + PG+
Sbjct: 957 RRYPPLEKLLCHLQSEAMIFNLPPGA 982
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 135/508 (26%), Positives = 214/508 (42%), Gaps = 120/508 (23%)
Query: 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-------------------- 277
SQ +AI ++K+ +IQGPPGTGKT + II +
Sbjct: 1338 SQAEAIVNSVSKEG-FSLIQGPPGTGKTKTILGIIGYFLSTKNASSSNVIKVPLEKNSSN 1396
Query: 278 -----QGERVLVTAPTNAAVDNMVEKLS---------DVGLNIVRVGNPARISPAVASKS 323
+ +++L+ AP+NAAVD + +L +VRVG ++ A+ +
Sbjct: 1397 TEQLLKKQKILICAPSNAAVDEICLRLKSGVYDKQGHQFKPQLVRVGRSDVVNVAIKDLT 1456
Query: 324 LGEIVKSKLAS------FVAEFERKKSDL---RKDLRQCLKDDS--------------LA 360
L E+V ++ E ERK ++ R++LR L +S L
Sbjct: 1457 LEELVDKRIGERNYEIRTDPELERKFNNAVTKRRELRGKLDSESGNPESPMSTEDISKLQ 1516
Query: 361 AGIRQLLK---QLGKTLKK-KEKETVK-------------EVLSSAQVVLATNTGAADPL 403
IR+L K +LG+ + +EK +V +L+ + ++ +T +G+A +
Sbjct: 1517 LKIRELSKIINELGRDRDEMREKNSVNYRNRDLDRRNAQAHILAVSDIICSTLSGSAHDV 1576
Query: 404 IRRLD-TFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGV 442
+ + FD V GKRCI+ GD QL P +LS A
Sbjct: 1577 LATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSGAASNFKYNQ 1636
Query: 443 SLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKP 502
SL R L L QYRM+ +I+ + S E Y G L D P +
Sbjct: 1637 SLFVRMEKNSSPYL---LDVQYRMHPSISKFPSSEFYQGRL-----------KDGPGMD- 1681
Query: 503 TWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEI---VVHHVFSLICAGV 559
+ + P L+ PY + A T S+ N E + +V ++F +
Sbjct: 1682 -ILNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKI 1740
Query: 560 SPSA-IAVQSPYVAQVQHLRERLDDLPEA---AGVEVATIDSFQGREADAVIISMVRSN- 614
+ I + SPY Q+Q +R+ ++ TID FQG+E + ++IS VR++
Sbjct: 1741 DFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADD 1800
Query: 615 TLGAVGFLGDSRRMNVAITRACKHVAVV 642
T +VGFL D RRMNVA+TRA + V+
Sbjct: 1801 TKSSVGFLKDFRRMNVALTRAKTSIWVL 1828
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 182/413 (44%), Gaps = 69/413 (16%)
Query: 281 RVLVTAPTNAAVDNMVEKLSDVGL----------NIVRVGNPARISPAVASKSLGEIVK- 329
R+L+ AP+N AVD +V +L GL N+VRVG P S V S SL +V+
Sbjct: 463 RILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVG-PGSHS-DVESVSLDYMVRC 520
Query: 330 -SKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLS- 387
+L + + + + + IR TL E + V LS
Sbjct: 521 RQQLMNSNSAIPSSSASTAAATSGSSRSTQDTSSIR--------TLVLDEADIVATTLSF 572
Query: 388 SAQVVLATNTGAADPLI-----RRLDTFDLVG-----KRCILAGDQCQLAPVILSRKALE 437
S +L G D +I + ++T L+ K+ +L GD QL I+S A++
Sbjct: 573 SGASLLTKMAGGFDIVIIDEAAQAVETSTLIPIQHGCKKVVLVGDPKQLPATIISPLAIK 632
Query: 438 GGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTV---ASHLL 494
SL +R L E LTTQYRM+ I ++ S+ Y L+ + A+H
Sbjct: 633 YKYDQSLFQR---LQEKNSPHMLTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRATHYH 689
Query: 495 VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSL 554
+ PF P L + LS E G GS +NE E ++ ++ +F L
Sbjct: 690 SN-PFFGP--------------LVFYDLSWSTETK---PGGGSVFNEHECKMAMY-LFQL 730
Query: 555 ICAGVSP-----SAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIIS 609
V P S I + SPY QV LRE + P G+ + T+D FQGRE + +I S
Sbjct: 731 FTK-VYPDEDFASRIGIISPYRQQVLALREIFKNYP---GISIDTVDGFQGREREIIIFS 786
Query: 610 MVRSNTL--GAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
VR+ +GFL D RRMNVA+TR + ++ ++ + N L++H
Sbjct: 787 CVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKALSINKDWNELIQH 839
Score = 37.4 bits (85), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290
T++DSQ A+ L + + +IQGPPGTGKT ++ +I+ + V + N
Sbjct: 331 FSSTYNDSQLNALTSAL-EGNAITLIQGPPGTGKTHVILGLISVLLHSTIVPKVKSGGNN 389
Query: 291 AVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL 350
D++ L D L++ + IS +K I + +FE + ++DL
Sbjct: 390 LGDHL---LKDRELSMAEKRDLWNISQPWFNKEFPHI-RDNYELIDYDFEERDQKRKRDL 445
Query: 351 RQCLKDDSLAAG 362
+ L+D G
Sbjct: 446 WRKLRDTGSVKG 457
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 206/481 (42%), Gaps = 76/481 (15%)
Query: 218 DLADW------SEVKLDGIMGKTFDDSQKKAIALGLNKK-RPL-LIIQGPPGTGKTGLLK 269
+++DW + + +++QK A+ L+ RPL I+ GPPGTGKT +
Sbjct: 722 EMSDWVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYILFGPPGTGKTVTII 781
Query: 270 EIIARA--VQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEI 327
E + + R+LV AP+N+A D + +L + +V PA + A+ EI
Sbjct: 782 EAVLQVHFALPDSRILVCAPSNSAADLVCLRLHES-----KVLQPATMVRVNATCRFEEI 836
Query: 328 VKSKLASFVAEFE--RKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEV 385
V + + + E K S R + C L Q+G + V E
Sbjct: 837 VIDAVKPYCRDGEDIWKASRFRIIITTCSSSG--------LFYQIGVRVGHFTHVFVDE- 887
Query: 386 LSSAQVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLL 445
A + LI D+ G+ +LAGD QL PVI SR A+ G+ VS L
Sbjct: 888 --------AGQASEPECLIPLGLMSDISGQ-IVLAGDPMQLGPVIKSRLAMAYGLNVSFL 938
Query: 446 ER---------------AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSL--ISSST 488
ER A H +L TKL YR ++A+ S+ Y L + T
Sbjct: 939 ERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPT 998
Query: 489 VASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVV 548
V + LL K + PL+ R G E + S++N EA V+
Sbjct: 999 VVTSLLGWEKLPKKGF----PLIFHGVR--------GSEAR--EGKSPSWFNPAEAVQVL 1044
Query: 549 HHVFSL---ICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADA 605
+ L I + VS S I V +PY QV+ +R L ++ + ++V +++ FQG+E
Sbjct: 1045 RYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILLRNV-DLMDIKVGSVEEFQGQEYLV 1103
Query: 606 VIISMVRSNT------LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLR 659
+IIS VRSN +GFL +S+R NVAITR + V+ + + + LL
Sbjct: 1104 IIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLE 1163
Query: 660 H 660
+
Sbjct: 1164 Y 1164
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 139/304 (45%), Gaps = 35/304 (11%)
Query: 378 EKETVKEVLSSAQVVLATN---TGAADPLIRRLDTFDLVGK-----RCILA--GDQCQLA 427
E + +++++S + V + N T + + I D L+ K C A QC
Sbjct: 729 ENKKLQKLISGSHVCIMVNGHKTFSQNNYIIFFDNILLLKKLPLHYMCAFALIHHQCFKG 788
Query: 428 PVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSS 487
V E G+ SL +R E V+ +LT QYRMN I + ++K +Y G L +S
Sbjct: 789 CVKSVSLVRELGMSESLFKRLERNQEAVV--QLTVQYRMNSQIMALSNKLVYEGRLECAS 846
Query: 488 TVASHLLVDTPFVKPTWI------TQCPLLLLDTRLPYGSLSLGCEEH---LDLAGTGSF 538
S+ +V P +K + +Q + + D P + E L+ G
Sbjct: 847 DRVSNAVVKLPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGI 906
Query: 539 YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSF 598
N EA++V + AG PS I + +PY Q++ + + L A+ VEV T+D +
Sbjct: 907 SNWIEAKLVFCLTKLFLKAGCRPSDIGIIAPYRQQLKVISNYFNSL-SASAVEVNTVDKY 965
Query: 599 QGREADAVIISMVRSNTLGAVG-FLGDSRRMNVAITRACKHVAVV-----------CDSS 646
QGR+ +I+S VRSN G +G L D RR+NVA+TRA KH ++ C
Sbjct: 966 QGRDKSVIIVSFVRSNIDGKLGDLLKDWRRLNVALTRA-KHKLIMLGCVPTLSRFLCLEQ 1024
Query: 647 TICH 650
ICH
Sbjct: 1025 LICH 1028
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 141/581 (24%), Positives = 234/581 (40%), Gaps = 131/581 (22%)
Query: 146 ESRHGDPTFSKLFGKSVRIDRIQ-------------GLADTLTYERNCEALML----LQK 188
E+ H DP K F V +DR++ GL + + N + L + L+
Sbjct: 404 ETHHEDPVTYKGFVHKVELDRVKLSFSTSLLSRFVDGLTFKVNFTFNRQPLRVQHRALEL 463
Query: 189 NGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQK-------- 240
G P + V + V L S+VKL K +D S +
Sbjct: 464 TGRWPLEPMLFPVAS-----RGVPLLP-------SDVKL-----KLYDRSLESNPEQLQA 506
Query: 241 -KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVE 297
K I +G + P +I GPPGTGKT L E I + V+ + +L AP+N+ D + +
Sbjct: 507 MKHIVMGTTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQ 565
Query: 298 KLS-DVGLNIVRVGNPARISPAVASKSLGEIVK------SKLASFVAEFERKKSDLRKDL 350
+L + +I R+ P+R V E +K +K FV ++K + R +
Sbjct: 566 RLRVHLPSSIYRLLAPSRDIHLVP-----EDIKPCCNWDAKKGDFVFPSKKKLQEYRVLI 620
Query: 351 RQCLKDDSLAAG-------IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPL 403
+ L + + + G + E E++ + +V A N G
Sbjct: 621 TTLITASRLVSAQFPIDHFTHIFIDEAGHAM---EPESLVAIAGLMEVKEADNPGG---- 673
Query: 404 IRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL----------HE 453
+ +LAGD QL PV+ + G+G SLLER T +
Sbjct: 674 ------------QLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNALYKKGPDGYN 721
Query: 454 GVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ--CPLL 511
TKL YR + I ++ Y G L + + V F + + + P++
Sbjct: 722 PQFITKLLRNYRSHPTILDVPNRLYYDGELQACADVVDR----ERFCRWEGLPRQDFPII 777
Query: 512 LLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-------AGVSPSAI 564
+G + E + SF+N EA V ++ L+ A +SP ++
Sbjct: 778 F------HGVMGKDERE----GNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRSV 827
Query: 565 AVQSPYVAQVQHLR-------ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLG 617
V SPY QV+ +R ++L L + ++V +++ FQG+E ++IS VRS+
Sbjct: 828 GVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSF 887
Query: 618 A-------VGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
+GFL + +R NVA+TRA + VV + + H+
Sbjct: 888 VQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGHD 928
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 96.3 bits (238), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 117/458 (25%), Positives = 194/458 (42%), Gaps = 74/458 (16%)
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEK 298
K I G + P +I GPPGTGKT L E I + V+ + +L AP+N+ D + ++
Sbjct: 509 KHIVRGTTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQR 567
Query: 299 LSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDS 358
L RV P+ I +A +V + + ++ KK + ++ L+
Sbjct: 568 L--------RVHLPSSIYRLLAPSRDIRMVPEDIKT-CCNWDAKKGEYVYPAKKHLQQ-- 616
Query: 359 LAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDL-----V 413
R L+ L + + + + + A + + L+ D+
Sbjct: 617 ----YRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHCMEPESLVAIAGLMDVKETGNP 672
Query: 414 GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL----------HEGVLATKLTTQ 463
G + +LAGD QL PV+ S AL+ G+G SLLER ++ TKL
Sbjct: 673 GGQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLRN 732
Query: 464 YRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ--CPLLLLDTRLPYGS 521
YR + I ++ Y G L + + V F + + Q P++ +G
Sbjct: 733 YRSHPTILDIPNQLYYDGELQACADVVDR----ERFCRWEGLPQQGFPIIF------HGV 782
Query: 522 LSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-------AGVSPSAIAVQSPYVAQV 574
+ E + SF+N EA V ++ L+ A +SP + V SPY QV
Sbjct: 783 MGKDERE----GNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPRNVGVISPYRKQV 838
Query: 575 QHLR-------ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGA-------VG 620
+ +R L L + ++V +++ FQG+E ++IS VRS+ +G
Sbjct: 839 EKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSFVQLDLDFNLG 898
Query: 621 FLGDSRRMNVAITRACKHVAVVCDSSTICHN----TFL 654
FL + +R NVA+TRA + VV + + H+ TFL
Sbjct: 899 FLKNPKRFNVAVTRAKALLIVVGNPLLLGHDPDWKTFL 936
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 122/466 (26%), Positives = 201/466 (43%), Gaps = 76/466 (16%)
Query: 230 IMGKTFDDSQKKAIALGLNKK-RPL-LIIQGPPGTGKTGLLKEIIARA--VQQGERVLVT 285
+++QK A+ L+ RPL I+ GPPGTGKT + E + + R+LV
Sbjct: 742 FFNPVLNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILVC 801
Query: 286 APTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFE--RKK 343
AP+N+A D + +L + +V PA + A+ E + + + + E +
Sbjct: 802 APSNSAADLVCLRLHES-----KVPKPAAMVRVNATCRFEETIIDAIKPYCRDGEDIWRA 856
Query: 344 SDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAADP- 402
S R + C +AG L Q+G V V + A++P
Sbjct: 857 SRFRIIITTCS-----SAG---LFYQIGV-----------RVGYFTHVFVDEAGQASEPE 897
Query: 403 LIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLER--------------- 447
+ L + + +LAGD QL PVI SR A+ G+ VS+LER
Sbjct: 898 CLIPLGLISDINGQIVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFG 957
Query: 448 AATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ 507
A + +L TKL YR + A+ + S+ Y L + D P +T
Sbjct: 958 ACGAYNPLLVTKLVKNYRSHSALLALPSRLFYHREL--------EVCAD-----PKVVTS 1004
Query: 508 CPLLLLDTRLPYGSLSL---GCEEHLDLAG-TGSFYNEGEAEIVVHHVFSL---ICAGVS 560
LL +LP L G + G + S+++ EA V+ + L + + VS
Sbjct: 1005 ---LLGWEKLPRKGFPLIFHGVRGNEAREGRSPSWFSPAEAVQVMRYCCLLARSVSSQVS 1061
Query: 561 PSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT----- 615
I V +PY QV+ ++ L ++ + ++V +++ FQG+E ++IS VRSN
Sbjct: 1062 SKDIGVITPYRKQVEKIKILLRNV-DLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFED 1120
Query: 616 -LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRH 660
+GFL +S+R NVAITR + ++ + + + LL +
Sbjct: 1121 DRYFLGFLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALLEY 1166
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 113/463 (24%), Positives = 197/463 (42%), Gaps = 94/463 (20%)
Query: 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAVDNMVEK 298
+ I G + P +I GPPGTGKT L E I + V+ + +L AP+N+ D + ++
Sbjct: 508 RHIVTGTTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQR 566
Query: 299 LSDVGLNIVRVGNPARI----SPAVASKSLGEIVK------SKLASFVAEFERKKSDLRK 348
L RV P+ I +P+ + + E +K +K +V ++K + R
Sbjct: 567 L--------RVHLPSSIYRLLAPSRDIRMVPEDIKPCCNWDAKKGEYVFPAKKKLQEYRV 618
Query: 349 DLRQCLKDDSLAAG-------IRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401
+ + L + + + G ++ + +++ A ++ TG D
Sbjct: 619 LITTLITAGRLVSAQFPIDHFTHIFIDEAGHCMEPES------LVAIAGLMEVKETG--D 670
Query: 402 PLIRRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATL---------- 451
P G + +LAGD QL PV+ S + G+G SLLER T
Sbjct: 671 P-----------GGQLVLAGDPRQLGPVLRSPLTQKHGLGYSLLERLLTYNSLYKKGPDG 719
Query: 452 HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQ--CP 509
++ TKL YR + I ++ Y G L + + V F + + + P
Sbjct: 720 YDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDR----ERFCRWAGLPRQGFP 775
Query: 510 LLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-------AGVSPS 562
++ +G + E + SF+N EA V ++ L+ A +SP
Sbjct: 776 IIF------HGVMGKDERE----GNSPSFFNPEEAATVTSYLKLLLAPSSKKGKARLSPR 825
Query: 563 AIAVQSPYVAQVQHLR-------ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNT 615
++ V SPY QV+ +R L L + ++V +++ FQG+E ++IS VRS+
Sbjct: 826 SVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQ 885
Query: 616 LGA-------VGFLGDSRRMNVAITRACKHVAVVCDSSTICHN 651
+GFL + +R NVA+TRA + +V + + H+
Sbjct: 886 SFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGHD 928
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 130/476 (27%), Positives = 204/476 (42%), Gaps = 93/476 (19%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER--VLVTAPTNAAV 292
+ SQK A+ LN + I+QGPPGTGKT ++EII + +++ +L A +N A+
Sbjct: 649 LNRSQKTAVEHVLNNS--ITILQGPPGTGKTSTIEEIIIQVIERFHAFPILCVAASNIAI 706
Query: 293 DNMVEKLSD--VGLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDL 350
DN+ EK+ + + I+R+ + + LGEI L + V + +L D+
Sbjct: 707 DNIAEKIMENRPQIKILRILSKKKEQQYSDDHPLGEIC---LHNIVYK------NLSPDM 757
Query: 351 RQCLKDDSLAAGIRQLLKQLGKTLKKKEKETV-KEVLSSAQVVLATNTGAADPLIRRLDT 409
Q + + + +++ + T KEK V +V+S +Q++ TN A ++ +
Sbjct: 758 -QVVANKTRRG---EMISKSEDTKFYKEKNRVTNKVVSQSQIIFTTNIAAGGRELKVIKE 813
Query: 410 FDLV-GKRCILAGDQCQLAPVIL----------SRKALEGGIGVSLLERAATLHEGVLAT 458
+V + + L P+ L K L + LE +L E VL+
Sbjct: 814 CPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQLSSFSNIPQLE--TSLFERVLSN 871
Query: 459 -------KLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVK-PTWITQCPL 510
L TQYRM+ I+ + K++Y G L T P V+ P + QC L
Sbjct: 872 GTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKDGVTDEQKAW---PGVQHPLFFYQCDL 928
Query: 511 LLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSP-SAIAVQSP 569
G S D+ G ++ N+ E +V + L+ P I V +P
Sbjct: 929 ---------GPESRVRSTQRDIVGF-TYENKHECVEIVKIIQILMLDKKVPLEEIGVITP 978
Query: 570 YVAQVQHLRERLD-------------------DLPEAA------------------GVEV 592
Y AQ L + L +L AA G+ V
Sbjct: 979 YSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLHV 1038
Query: 593 ATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 648
AT+DSFQG E +I S VR+NT +GFL D RR+NVA+TRA KH +V + +
Sbjct: 1039 ATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRA-KHGLIVVGNKNV 1093
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 119/257 (46%), Gaps = 56/257 (21%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE----------GVLATKLTTQYR 465
+ +LAGD QL P++ S A++ G+G+SLLER T +E TKL YR
Sbjct: 696 QLVLAGDPKQLGPILRSPFAIKYGLGLSLLERLMTQNELYQKGDTGFDNRYVTKLLQNYR 755
Query: 466 MNDAIASWASKEMYGGSLIS-SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
+ +I ++ Y L + + ++S TW LP +
Sbjct: 756 SHPSILKVPNELFYDNELKACADEISSRQYC-------TW----------EHLPKRGFPV 798
Query: 525 ------GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI-------CAGVSPSAIAVQSPYV 571
G +E + + SF+N E + ++ ++ L+ A +SP I + +PY
Sbjct: 799 IFHGVVGKDERE--STSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKISPKDIGIIAPYR 856
Query: 572 AQVQHLRERLD---DLPEAAGVE---VATIDSFQGREADAVIISMVRS-------NTLGA 618
QV+ +R+ + +L +G+E V +++ FQG+E +I+S VRS +
Sbjct: 857 KQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSSKEHIILDDKFN 916
Query: 619 VGFLGDSRRMNVAITRA 635
+GFL + +R NVA+TRA
Sbjct: 917 IGFLKNEKRFNVAVTRA 933
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAVDNMVEKL 299
I G +K P L+ GPPGTGKT + E I + + G R+L AP+N+A D + EKL
Sbjct: 536 IVAGTSKPAPYLVF-GPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSAADQLGEKL 593
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 128/300 (42%), Gaps = 44/300 (14%)
Query: 385 VLSSAQVVLATNTGAA---------DPLIRRLD---------TFDLVGKRC---ILAGDQ 423
+L A+VV T TGAA +P I ++ T + K C IL GD
Sbjct: 967 ILKDAEVVGMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDH 1026
Query: 424 CQLAPVI-LSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
QL P + A + VSL ER + + +L Q+RM IA + +Y
Sbjct: 1027 QQLRPSANVYDLAKNFNLEVSLFERLVKV--NIPFVRLNYQHRMRPEIARLLTPHIYQ-D 1083
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG 542
L + +V + + L ++ P + G S N+
Sbjct: 1084 LENHPSVLKYEQIKG--------VSSNLFFVEHNFPEQEIQEG----------KSHQNQH 1125
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGRE 602
EA VV L+C PS I + + Y Q+ LR +L + AG++V +D +QG E
Sbjct: 1126 EAHFVVELCQYLLCQEYLPSQITILTTYTGQLFCLR-KLMPVKTFAGIKVHVVDKYQGEE 1184
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D +++S+VRSN G VGFL R+ VA++RA K + + + + +R++ +R
Sbjct: 1185 NDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQMLAKVPLWSRIIHTLR 1244
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 26/126 (20%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTG---------LLKEIIARAVQQGERVLVT 285
DDSQ +A+ L K+ L IIQGPPGTGKT L + + + Q +LV
Sbjct: 591 LDDSQMEALQFALTKE--LAIIQGPPGTGKTYVGLKIVQALLTNKSVWQINTQTFPILVV 648
Query: 286 APTNAAVDNMVEKLSDV-GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKS 344
TN A+D +E + +IVRVG +S EI+K F R K
Sbjct: 649 CYTNHALDQFLEGIYGCQKTSIVRVG----------GRSNSEILK----QFTLRELRNKR 694
Query: 345 DLRKDL 350
+ R+ L
Sbjct: 695 EFRRTL 700
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 126/300 (42%), Gaps = 44/300 (14%)
Query: 385 VLSSAQVVLATNTGAA---------DPLIRRLD---------TFDLVGKRC---ILAGDQ 423
+L AQVV T TGAA +P I ++ T + K C IL GD
Sbjct: 974 ILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDH 1033
Query: 424 CQLAP-VILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGS 482
QL P + A + VSL ER + + +L Q+RM IA + +Y
Sbjct: 1034 QQLRPSANVYDLAKNFNLEVSLFERLVKV--NIPFVRLNYQHRMCPEIARLLTPHIYQ-D 1090
Query: 483 LISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEG 542
L + +V + + L ++ P + G S N+
Sbjct: 1091 LENHPSVLKYEKIKG--------VSSNLFFVEHNFPEQEIQEG----------KSHQNQH 1132
Query: 543 EAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGRE 602
EA VV +C PS I + + Y Q+ LR +L AGV V +D +QG E
Sbjct: 1133 EAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLR-KLMPAKTFAGVRVHVVDKYQGEE 1191
Query: 603 ADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 662
D +++S+VRSN G VGFL S R+ VA++RA K + + + + ++++ +R
Sbjct: 1192 NDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLR 1251
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 26/126 (20%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTG---------LLKEIIARAVQQGERVLVT 285
DDSQ +A+ L R L IIQGPPGTGKT L E + + Q +LV
Sbjct: 598 LDDSQMEALQFALT--RELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVV 655
Query: 286 APTNAAVDNMVEKLSDV-GLNIVRVGNPARISPAVASKSLGEIVKSKLASFVAEFERKKS 344
TN A+D +E + + +IVRVG +S EI+K F R K
Sbjct: 656 CYTNHALDQFLEGIYNCQKTSIVRVG----------GRSNSEILK----QFTLRELRNKR 701
Query: 345 DLRKDL 350
+ R++L
Sbjct: 702 EFRRNL 707
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 56/257 (21%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHE----------GVLATKLTTQYR 465
+ +LAGD QL P++ S A+ G+ VSLLER T ++ +KL YR
Sbjct: 701 QLVLAGDPKQLGPILRSPLAINHGLDVSLLERLMTQNDLYKRGDVEFDNRYVSKLIMNYR 760
Query: 466 MNDAIASWASKEMYGGSLIS-SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
+ I ++ Y G L + + ++S+ W LP +
Sbjct: 761 SHPYILEVPNRLFYDGELKACADEISSNQYC-------MW----------EHLPSKGFPV 803
Query: 525 ------GCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA----GVS---PSAIAVQSPYV 571
G +E + + SF+N E I+V ++ L+ G+S P I + +PY
Sbjct: 804 IFHGVPGKDERE--SNSPSFFNIYEINILVDYLKKLLLTQPKKGISRIFPKDIGIIAPYR 861
Query: 572 AQVQHLRERLD---DLPEAAGVE---VATIDSFQGREADAVIISMVRS-------NTLGA 618
QV+ ++ +D D + G++ V +++ FQG+E +++S VRS +
Sbjct: 862 KQVEKIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSSVKYISLDETFN 921
Query: 619 VGFLGDSRRMNVAITRA 635
+GFL + +R NVA+TRA
Sbjct: 922 IGFLKNEKRFNVAVTRA 938
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER------VLVTAPTNAAVDNMV 296
I G +K P L+ GPPGTGKT I A++Q E+ +L AP+N+A D +
Sbjct: 541 IVAGTSKPAPYLVF-GPPGTGKTV----TIVEAIKQVEKNIPDAYILACAPSNSAADQLC 595
Query: 297 EKL 299
EKL
Sbjct: 596 EKL 598
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 129/496 (26%), Positives = 196/496 (39%), Gaps = 124/496 (25%)
Query: 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEII-------ARAVQ-----QGER- 281
+ SQ A+ L K P +IQGPPGTGKT + I+ VQ +GE+
Sbjct: 2153 LNPSQNVAVREALEK--PFTVIQGPPGTGKTIVGLHIVFWFHKSNQEQVQPGGPPRGEKR 2210
Query: 282 -----VLVTAPTNAAVDNMVEKLSDVGLNIVRVG-NPARISPAVASKSLGEIVKSKLASF 335
+L P+N +VD + GL + R+ P R+ A S E ++ S
Sbjct: 2211 LGGPCILYCGPSNKSVDVLA------GLLLRRMELKPLRVYSEQAEAS--EFPVPRVGS- 2261
Query: 336 VAEFERKKSDLRKDLR-----QCLKDDSLAAGIRQLLK-------------QLGKTLKKK 377
+ LRK R Q L+ +L IRQ Q G+ ++
Sbjct: 2262 -------RKLLRKSPREGRPNQSLRSITLHHRIRQAPNPYSSEIKAFDTRLQRGELFSRE 2314
Query: 378 EKETVKEVLSSA--------QVVLATNTGAADPLIRRLDTFDLV---------------- 413
+ K+VL A +V+L T + AA ++ LD ++
Sbjct: 2315 DLVWYKKVLWEARKFELDRHEVILCTCSCAASASLKILDVRQILVDEAGMATEPETLIPL 2374
Query: 414 -----GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMND 468
++ +L GD QL PV+ + + G+ SL ER HE A L TQYRM++
Sbjct: 2375 VQFPQAEKVVLLGDHKQLRPVVKNERLQNLGLDRSLFER---YHED--AHMLDTQYRMHE 2429
Query: 469 AIASWASKEMYGGSLIS------SSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSL 522
I ++ S Y L + +V H ++ CP++ + SL
Sbjct: 2430 GICAFPSVAFYKSKLKTWQGLRRPPSVLGHAGKES----------CPVIFGHVQGHERSL 2479
Query: 523 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICA-GVSPSAIAVQSPYVAQVQHLRERL 581
+ +E S N E VV L V P IAV +PY AQ + + L
Sbjct: 2480 LVSTDE----GNENSKANLEEVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEISKAL 2535
Query: 582 DDLPEAAGVEVATIDSFQGREADAVIISMVR-------------SNTLGAVGFLGDSRRM 628
AGV V++I QG E V++S VR S +GF+ D ++
Sbjct: 2536 RR-EGIAGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQV 2594
Query: 629 NVAITRACKHVAVVCD 644
NVA+TRA + + ++ D
Sbjct: 2595 NVAVTRAQEGLCLIGD 2610
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 102/257 (39%), Gaps = 45/257 (17%)
Query: 414 GKRCILAGDQCQLAPVILS----RKALEGGIGVSLLERAATLHEGVLATKLT--TQYRMN 467
G R +LAGD Q+ P + S R A + L HE ++L YR
Sbjct: 687 GTRLVLAGDHMQVTPRLFSVARARAAEHTLLHRLFLCYQQETHEVARQSRLVFHENYRCT 746
Query: 468 DAIASWASKEMY---GGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSL 524
DAI S+ S+ Y G + + V H PL+ + ++
Sbjct: 747 DAIVSFISRHFYVAKGNPIHARGKVPPH------------PRHYPLM-------FCHVAG 787
Query: 525 GCEEHLDLAGTGSFYNEGEAEIVV------HHVFSLICAGVSPSAIAVQSPYVAQVQHLR 578
+ + +A S+ N E VV ++ + G I V S + AQV LR
Sbjct: 788 SPDRDMSMA---SWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALR 843
Query: 579 ERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSN----TLGAVG--FLGDSRRMNVAI 632
+ L + V V + + GR+ V++S V + + GA+ F D+R +N +
Sbjct: 844 QELRRR-DLGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVL 902
Query: 633 TRACKHVAVVCDSSTIC 649
TRA + VV D+ +C
Sbjct: 903 TRAQSQLVVVGDAVALC 919
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 119/484 (24%), Positives = 183/484 (37%), Gaps = 112/484 (23%)
Query: 222 WSEVK-LDGIMGKTFDDSQKKA---IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ 277
WS + D + + QK+A I L + P ++I GP GTGKT L + + +Q
Sbjct: 628 WSPNRQWDEQLDPRLNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQ 687
Query: 278 QGE-RVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN----PARI----------SPAVASK 322
Q E R+L+ +N+A D ++ D V GN P R+ P V
Sbjct: 688 QQETRILICTHSNSAADLYIK---DYLHPYVEAGNPQARPLRVYFRNRWVKTVHPVVHQY 744
Query: 323 SLGEIVKSKLASFVAEFERKKSDLRK--------DLRQCLKDDSLAAGIRQLLKQLGKTL 374
L + S ++F +K D+ K + Q L L G + L +
Sbjct: 745 CL---ISSAHSTFQMP---QKEDILKHRVVVVTLNTSQYLCQLDLEPGFFTHIL-LDEAA 797
Query: 375 KKKEKETVKEVLSSAQVVLATNTGAADPLIRRLDTFDLVGKRCILAGDQCQLAPVILSRK 434
+ E ET+ + LAT R +LAGD QL+P + S
Sbjct: 798 QAMECETI------MPLALATQ-----------------NTRIVLAGDHMQLSPFVYSEF 834
Query: 435 ALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASWASKEMYGGSLISSSTVASH 492
A E + VSLL+R + + L YR ++AI ++ S+ Y G L++S +H
Sbjct: 835 ARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAH 894
Query: 493 LLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHV- 551
PL R E + + +FYN E VV V
Sbjct: 895 KDF------------YPLTFFTAR----------GEDVQEKNSTAFYNNAEVFEVVERVE 932
Query: 552 -----FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAV 606
+ + + +I V +PY QV +R L + V V + + QG++ +
Sbjct: 933 ELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKK-RLSDVNVERVLNVQGKQFRVL 991
Query: 607 IISMVRSNTLGA---------------------VGFLGDSRRMNVAITRACKHVAVVCDS 645
+S VR+ GFL + + +N AITRA VAVV D
Sbjct: 992 FLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDP 1051
Query: 646 STIC 649
+C
Sbjct: 1052 IALC 1055
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 102/263 (38%), Gaps = 52/263 (19%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK--LTTQYRMNDAIASW 473
R +LAGD QL+P + S A E + VSLL+R + + L YR ++AI ++
Sbjct: 809 RVVLAGDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINY 868
Query: 474 ASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLA 533
S Y G L++S H PL R E +
Sbjct: 869 TSDLFYEGKLMASGKQPPHKDF------------YPLTFFTAR----------GEDVQEK 906
Query: 534 GTGSFYNEGEAEIVVHHV------FSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEA 587
+ ++YN E +V V + + + +I V SPY QV +R L
Sbjct: 907 NSTAYYNNAEVFEIVERVEEMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRKK-RM 965
Query: 588 AGVEVATIDSFQGREADAVIISMVRSNTLGA---------------------VGFLGDSR 626
+ V V + + QG++ + +S VR+ GFL + +
Sbjct: 966 SEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYK 1025
Query: 627 RMNVAITRACKHVAVVCDSSTIC 649
+N AITRA VAVV D +C
Sbjct: 1026 LLNTAITRAQSLVAVVGDPIALC 1048
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 122/283 (43%), Gaps = 44/283 (15%)
Query: 416 RCILAGDQCQLAPVILSRKALEGGIGVSLLER---------------AATLHEGVLATKL 460
+ +L+GD QL ++ SR A + G +S LER ++ + ++ TKL
Sbjct: 971 QVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPYRKDLQRFPESSGYNPLVLTKL 1030
Query: 461 TTQYRMNDAIASWASKEMYGGSLI----SSSTVASHLL--VDTPFVKPTWITQCPLLLLD 514
YR +I S S+ Y LI + S LL + F I Q
Sbjct: 1031 LYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFESEKDIPQA------ 1084
Query: 515 TRLPYGSLSLGC-EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQ 573
+G+ G E+ + S++N E V +L A V+ I + +PY Q
Sbjct: 1085 ----HGTFFYGIIGENRQNNDSPSWFNPQEVREVFLMTIALYRANVTADQIGIITPYQKQ 1140
Query: 574 VQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRS-------NTLGAVGFLGDSR 626
V+ LR + ++ +++ FQG+E D ++IS VRS + ++GF+ S+
Sbjct: 1141 VKMLRSMFIG-TDVVMPKIGSVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVRCSK 1199
Query: 627 RMNVAITRACKHVAVVCDSSTI----CHNTFLARLLRHIRYFG 665
R+NVA++RA + + + + C + +++ YFG
Sbjct: 1200 RLNVAVSRARAMMIIFGNPHLLAVDECWRQLILFCVKNNAYFG 1242
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 20/114 (17%)
Query: 193 KRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKA---IALGLNK 249
+ NP + + K+D +L ++ L +W L+ I QK+A I G +
Sbjct: 756 RENPQLDVYM-----KDDDMYLYDSKL-EWYNQSLNSI--------QKRAVFNILRGEAE 801
Query: 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAVDNMVEKLSD 301
P ++ GPPG+GKT L E + + V+ G R+LV P+N++ D + ++L D
Sbjct: 802 NIPYVLF-GPPGSGKTMTLIETLLQLVRNLPGARILVGTPSNSSADLVTKRLID 854
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,794,930
Number of Sequences: 539616
Number of extensions: 10757395
Number of successful extensions: 42998
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 42517
Number of HSP's gapped (non-prelim): 488
length of query: 690
length of database: 191,569,459
effective HSP length: 124
effective length of query: 566
effective length of database: 124,657,075
effective search space: 70555904450
effective search space used: 70555904450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)