Query 038763
Match_columns 690
No_of_seqs 417 out of 2309
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:22:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 7E-102 2E-106 897.9 52.3 605 11-670 2-637 (646)
2 2gk6_A Regulator of nonsense t 100.0 7.8E-78 2.7E-82 692.6 54.1 587 6-677 2-618 (624)
3 2wjy_A Regulator of nonsense t 100.0 1.2E-75 4E-80 685.3 55.3 591 4-679 176-796 (800)
4 2xzl_A ATP-dependent helicase 100.0 2.7E-76 9.2E-81 691.7 48.7 592 4-680 178-799 (802)
5 3lfu_A DNA helicase II; SF1 he 100.0 4.1E-28 1.4E-32 281.4 21.2 288 233-577 8-363 (647)
6 1pjr_A PCRA; DNA repair, DNA r 99.9 6.4E-26 2.2E-30 265.2 18.5 124 415-578 244-368 (724)
7 3e1s_A Exodeoxyribonuclease V, 99.9 1.8E-26 6.3E-31 261.2 12.8 284 233-648 188-544 (574)
8 1uaa_A REP helicase, protein ( 99.9 1E-24 3.5E-29 253.7 22.9 287 234-574 2-355 (673)
9 3upu_A ATP-dependent DNA helic 99.9 4E-25 1.4E-29 245.3 9.3 68 232-299 23-94 (459)
10 1w36_D RECD, exodeoxyribonucle 99.9 2E-22 6.9E-27 230.4 14.6 354 236-646 151-584 (608)
11 3vkw_A Replicase large subunit 99.8 3.7E-18 1.3E-22 184.2 15.9 272 251-664 161-436 (446)
12 3u4q_A ATP-dependent helicase/ 99.7 2.6E-17 8.8E-22 202.5 18.5 64 234-301 10-79 (1232)
13 3dmn_A Putative DNA helicase; 99.6 5.3E-15 1.8E-19 141.6 10.6 141 461-645 2-154 (174)
14 1w36_B RECB, exodeoxyribonucle 99.6 1.5E-14 5.2E-19 177.4 16.4 49 253-301 18-78 (1180)
15 3u4q_B ATP-dependent helicase/ 99.0 4.3E-09 1.5E-13 129.3 17.7 107 439-584 256-366 (1166)
16 2fz4_A DNA repair protein RAD2 98.1 9.2E-06 3.1E-10 81.2 10.3 75 233-312 92-167 (237)
17 2gxq_A Heat resistant RNA depe 98.0 1.5E-05 5E-10 77.4 9.1 69 232-302 21-95 (207)
18 1rif_A DAR protein, DNA helica 98.0 1.4E-05 4.8E-10 82.0 9.0 68 234-303 113-181 (282)
19 3b6e_A Interferon-induced heli 98.0 1.2E-05 4E-10 78.5 7.7 67 233-301 32-105 (216)
20 2pl3_A Probable ATP-dependent 97.9 3.5E-05 1.2E-09 76.6 10.2 70 231-302 44-120 (236)
21 1qde_A EIF4A, translation init 97.8 3.6E-05 1.2E-09 75.7 8.9 69 232-302 34-105 (224)
22 1hv8_A Putative ATP-dependent 97.8 3.6E-05 1.2E-09 81.3 9.1 70 232-302 26-97 (367)
23 3bor_A Human initiation factor 97.8 2.7E-05 9.2E-10 77.6 7.1 69 232-302 50-121 (237)
24 1t6n_A Probable ATP-dependent 97.8 4.9E-05 1.7E-09 74.5 8.9 69 232-302 34-105 (220)
25 1vec_A ATP-dependent RNA helic 97.8 4.8E-05 1.6E-09 73.7 8.7 69 232-302 23-94 (206)
26 3iuy_A Probable ATP-dependent 97.8 7.2E-05 2.5E-09 73.8 9.6 69 232-302 40-117 (228)
27 1wrb_A DJVLGB; RNA helicase, D 97.7 0.00016 5.5E-09 72.6 11.9 69 232-302 43-123 (253)
28 3dkp_A Probable ATP-dependent 97.7 8.2E-05 2.8E-09 74.3 9.6 69 232-302 49-121 (245)
29 3fe2_A Probable ATP-dependent 97.7 0.00013 4.4E-09 72.8 10.6 69 231-301 48-124 (242)
30 3pey_A ATP-dependent RNA helic 97.7 7.4E-05 2.5E-09 79.7 9.2 71 232-302 25-98 (395)
31 1q0u_A Bstdead; DEAD protein, 97.7 5.4E-05 1.8E-09 74.3 7.4 69 232-302 24-95 (219)
32 3ly5_A ATP-dependent RNA helic 97.7 7.8E-05 2.7E-09 75.5 8.6 69 232-302 74-149 (262)
33 3oiy_A Reverse gyrase helicase 97.7 9.3E-05 3.2E-09 80.1 9.7 74 234-309 21-97 (414)
34 2oca_A DAR protein, ATP-depend 97.7 7.6E-05 2.6E-09 83.1 9.2 67 234-302 113-180 (510)
35 2z0m_A 337AA long hypothetical 97.7 0.00012 4.1E-09 76.3 9.8 65 233-302 15-79 (337)
36 3ber_A Probable ATP-dependent 97.7 0.00014 4.8E-09 73.0 9.8 69 232-302 63-134 (249)
37 2fwr_A DNA repair protein RAD2 97.6 0.00019 6.4E-09 79.1 11.6 75 234-313 93-168 (472)
38 2va8_A SSO2462, SKI2-type heli 97.6 0.00012 4.2E-09 85.2 10.0 70 231-301 27-97 (715)
39 2oxc_A Probable ATP-dependent 97.6 0.00017 5.8E-09 71.3 9.1 69 232-302 44-115 (230)
40 1s2m_A Putative ATP-dependent 97.6 0.00013 4.5E-09 78.2 8.7 69 232-302 41-112 (400)
41 3fht_A ATP-dependent RNA helic 97.5 0.00018 6.1E-09 77.3 9.3 72 231-302 44-118 (412)
42 3ec2_A DNA replication protein 97.5 0.00013 4.6E-09 69.1 6.7 51 236-286 16-74 (180)
43 1xti_A Probable ATP-dependent 97.5 0.00027 9.2E-09 75.4 9.7 69 232-302 28-99 (391)
44 3eiq_A Eukaryotic initiation f 97.5 0.00021 7.2E-09 76.9 8.5 69 232-302 60-131 (414)
45 2j0s_A ATP-dependent RNA helic 97.4 0.00021 7.1E-09 77.0 8.4 69 232-302 57-128 (410)
46 1wp9_A ATP-dependent RNA helic 97.4 0.00034 1.2E-08 76.4 9.8 66 234-302 9-75 (494)
47 1fuu_A Yeast initiation factor 97.4 0.00021 7.3E-09 76.2 7.1 68 233-302 42-112 (394)
48 4a2p_A RIG-I, retinoic acid in 97.4 0.00055 1.9E-08 76.6 10.8 74 234-309 7-89 (556)
49 3tbk_A RIG-I helicase domain; 97.4 0.00058 2E-08 76.4 10.9 74 234-309 4-86 (555)
50 3i5x_A ATP-dependent RNA helic 97.3 0.00048 1.6E-08 77.7 10.1 70 232-301 92-168 (563)
51 3h1t_A Type I site-specific re 97.3 0.00024 8.1E-09 80.8 7.6 72 234-305 178-262 (590)
52 3llm_A ATP-dependent RNA helic 97.3 0.00036 1.2E-08 69.3 8.0 65 235-301 62-131 (235)
53 3fmp_B ATP-dependent RNA helic 97.3 0.00031 1.1E-08 77.5 8.2 70 232-301 112-184 (479)
54 2zj8_A DNA helicase, putative 97.3 0.00025 8.7E-09 82.5 7.7 69 232-301 21-90 (720)
55 1gm5_A RECG; helicase, replica 97.3 0.00033 1.1E-08 81.6 8.4 69 234-302 368-440 (780)
56 2i4i_A ATP-dependent RNA helic 97.3 0.00059 2E-08 73.5 9.9 70 231-302 34-124 (417)
57 4a4z_A Antiviral helicase SKI2 97.3 0.00049 1.7E-08 82.6 9.9 67 234-302 39-105 (997)
58 3sqw_A ATP-dependent RNA helic 97.3 0.00063 2.2E-08 77.0 10.1 70 232-301 41-117 (579)
59 3bos_A Putative DNA replicatio 97.3 0.00054 1.9E-08 67.5 8.4 54 235-288 35-89 (242)
60 2xgj_A ATP-dependent RNA helic 97.2 0.00065 2.2E-08 81.6 10.0 67 234-302 86-152 (1010)
61 2db3_A ATP-dependent RNA helic 97.2 0.00089 3E-08 72.9 10.3 70 231-302 75-152 (434)
62 3fmo_B ATP-dependent RNA helic 97.2 0.0007 2.4E-08 69.9 9.0 71 232-302 112-185 (300)
63 2p6r_A Afuhel308 helicase; pro 97.2 0.00019 6.4E-09 83.4 5.1 68 232-301 23-90 (702)
64 3fho_A ATP-dependent RNA helic 97.2 0.00018 6.2E-09 80.2 4.8 70 233-302 140-212 (508)
65 3l9o_A ATP-dependent RNA helic 97.2 0.00056 1.9E-08 82.9 9.2 67 234-302 184-250 (1108)
66 4ddu_A Reverse gyrase; topoiso 97.1 0.0012 4.1E-08 80.0 10.3 67 234-302 78-144 (1104)
67 4a2q_A RIG-I, retinoic acid in 97.1 0.0016 5.3E-08 76.8 10.9 76 233-310 247-331 (797)
68 2dr3_A UPF0273 protein PH0284; 97.1 0.00082 2.8E-08 66.7 7.1 53 251-304 23-75 (247)
69 4b4t_I 26S protease regulatory 97.0 0.012 4.2E-07 62.9 16.4 32 254-288 219-250 (437)
70 3dmq_A RNA polymerase-associat 97.0 0.0014 4.9E-08 78.6 10.0 72 234-306 153-227 (968)
71 2orw_A Thymidine kinase; TMTK, 97.0 0.00061 2.1E-08 65.0 5.4 37 252-288 4-40 (184)
72 2kjq_A DNAA-related protein; s 97.0 0.00064 2.2E-08 62.5 5.4 53 233-288 21-73 (149)
73 2eyq_A TRCF, transcription-rep 97.0 0.0015 5.2E-08 79.6 10.2 68 234-301 603-674 (1151)
74 2ykg_A Probable ATP-dependent 97.0 0.0024 8.2E-08 73.8 10.9 75 233-309 12-95 (696)
75 2w58_A DNAI, primosome compone 96.9 0.0012 4.1E-08 63.6 6.8 35 252-286 55-89 (202)
76 2b8t_A Thymidine kinase; deoxy 96.9 0.00075 2.6E-08 66.4 5.2 40 250-289 11-50 (223)
77 3dm5_A SRP54, signal recogniti 96.9 0.0017 6E-08 70.2 8.3 57 252-308 101-160 (443)
78 4gl2_A Interferon-induced heli 96.9 0.00092 3.2E-08 77.4 6.3 67 234-302 7-80 (699)
79 2zpa_A Uncharacterized protein 96.9 0.00088 3E-08 75.8 5.8 65 234-301 175-239 (671)
80 2z83_A Helicase/nucleoside tri 96.8 0.00088 3E-08 73.6 5.8 52 251-302 21-73 (459)
81 1jbk_A CLPB protein; beta barr 96.8 0.0024 8E-08 60.1 8.0 41 237-277 28-69 (195)
82 1l8q_A Chromosomal replication 96.8 0.002 6.9E-08 67.0 8.0 37 252-288 38-74 (324)
83 3kl4_A SRP54, signal recogniti 96.8 0.0022 7.4E-08 69.4 8.3 58 252-309 98-158 (433)
84 2p65_A Hypothetical protein PF 96.7 0.0021 7.3E-08 60.3 6.8 39 239-277 30-69 (187)
85 4a2w_A RIG-I, retinoic acid in 96.7 0.0026 9E-08 76.0 9.1 75 233-309 247-330 (936)
86 3te6_A Regulatory protein SIR3 96.7 0.00099 3.4E-08 69.1 4.2 27 251-277 45-71 (318)
87 3n70_A Transport activator; si 96.7 0.001 3.5E-08 60.6 3.8 30 252-281 25-54 (145)
88 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0027 9.3E-08 62.1 7.0 52 251-303 23-74 (235)
89 2r8r_A Sensor protein; KDPD, P 96.6 0.0017 5.8E-08 63.6 5.2 34 254-287 9-42 (228)
90 2r2a_A Uncharacterized protein 96.6 0.00095 3.3E-08 64.5 3.3 34 253-286 7-46 (199)
91 2qgz_A Helicase loader, putati 96.6 0.0018 6.2E-08 67.1 5.7 36 252-287 153-189 (308)
92 2xau_A PRE-mRNA-splicing facto 96.6 0.0029 1E-07 73.9 7.9 65 236-301 95-162 (773)
93 1xx6_A Thymidine kinase; NESG, 96.6 0.002 6.7E-08 61.8 5.3 37 252-288 9-45 (191)
94 1gku_B Reverse gyrase, TOP-RG; 96.6 0.003 1E-07 76.5 7.9 65 235-302 58-122 (1054)
95 3bh0_A DNAB-like replicative h 96.5 0.0029 9.9E-08 65.7 6.8 50 251-301 68-117 (315)
96 2chg_A Replication factor C sm 96.5 0.0052 1.8E-07 59.2 8.1 44 236-279 22-66 (226)
97 1tue_A Replication protein E1; 96.5 0.0017 5.8E-08 62.5 4.2 23 253-275 60-82 (212)
98 1vma_A Cell division protein F 96.5 0.0049 1.7E-07 63.6 8.0 56 252-307 105-163 (306)
99 2v1x_A ATP-dependent DNA helic 96.5 0.0056 1.9E-07 69.3 9.0 73 233-310 43-115 (591)
100 1njg_A DNA polymerase III subu 96.4 0.0027 9.4E-08 62.0 5.5 42 236-277 28-71 (250)
101 2v1u_A Cell division control p 96.4 0.0042 1.4E-07 65.8 7.2 43 236-278 24-71 (387)
102 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0054 1.8E-07 61.4 7.6 33 252-287 40-72 (262)
103 3syl_A Protein CBBX; photosynt 96.4 0.0054 1.8E-07 63.1 7.8 36 252-287 68-107 (309)
104 1oyw_A RECQ helicase, ATP-depe 96.4 0.0042 1.4E-07 69.3 7.4 72 233-309 24-95 (523)
105 2jlq_A Serine protease subunit 96.4 0.0035 1.2E-07 68.6 6.6 60 242-302 11-71 (451)
106 1ofh_A ATP-dependent HSL prote 96.4 0.0039 1.3E-07 64.0 6.6 24 252-275 51-74 (310)
107 2v6i_A RNA helicase; membrane, 96.4 0.0032 1.1E-07 68.5 6.2 50 252-301 3-53 (431)
108 2l8b_A Protein TRAI, DNA helic 96.4 0.0051 1.7E-07 57.7 6.5 65 236-300 36-101 (189)
109 4f92_B U5 small nuclear ribonu 96.3 0.0088 3E-07 75.5 10.6 70 231-301 923-994 (1724)
110 2zts_A Putative uncharacterize 96.3 0.0031 1.1E-07 62.5 5.2 52 251-303 30-82 (251)
111 4f92_B U5 small nuclear ribonu 96.3 0.0095 3.3E-07 75.2 10.3 69 232-301 77-156 (1724)
112 3u61_B DNA polymerase accessor 96.3 0.0049 1.7E-07 64.0 6.6 62 235-299 30-93 (324)
113 1yks_A Genome polyprotein [con 96.3 0.0041 1.4E-07 67.8 6.2 53 252-304 9-62 (440)
114 2wv9_A Flavivirin protease NS2 96.3 0.0025 8.5E-08 73.2 4.6 64 241-304 227-295 (673)
115 1xjc_A MOBB protein homolog; s 96.3 0.0048 1.6E-07 57.7 5.7 40 252-291 5-44 (169)
116 3h4m_A Proteasome-activating n 96.3 0.0039 1.3E-07 63.4 5.6 31 252-285 52-82 (285)
117 4a15_A XPD helicase, ATP-depen 96.2 0.0085 2.9E-07 68.2 8.8 75 236-311 5-87 (620)
118 2qby_B CDC6 homolog 3, cell di 96.2 0.0078 2.7E-07 63.8 7.9 35 252-286 46-88 (384)
119 3hr8_A Protein RECA; alpha and 96.2 0.0037 1.3E-07 65.9 5.1 49 251-299 61-109 (356)
120 4a1f_A DNAB helicase, replicat 96.2 0.006 2E-07 63.8 6.6 50 251-301 46-95 (338)
121 2vl7_A XPD; helicase, unknown 96.2 0.011 3.8E-07 66.2 9.2 74 234-311 7-83 (540)
122 4b4t_M 26S protease regulatory 96.2 0.0025 8.4E-08 68.9 3.6 32 254-288 218-249 (434)
123 2z4s_A Chromosomal replication 96.1 0.0082 2.8E-07 65.4 7.8 37 252-288 131-169 (440)
124 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.0075 2.6E-07 62.8 7.1 32 252-285 46-77 (322)
125 2j37_W Signal recognition part 96.1 0.0096 3.3E-07 65.6 8.3 56 253-308 103-161 (504)
126 3b9p_A CG5977-PA, isoform A; A 96.1 0.004 1.4E-07 63.8 4.9 24 252-275 55-78 (297)
127 1j8m_F SRP54, signal recogniti 96.1 0.0098 3.4E-07 61.1 7.8 56 253-308 100-158 (297)
128 2zr9_A Protein RECA, recombina 96.1 0.0042 1.4E-07 65.5 5.0 40 251-290 61-100 (349)
129 1fnn_A CDC6P, cell division co 96.1 0.0086 2.9E-07 63.5 7.5 47 253-299 46-94 (389)
130 2bjv_A PSP operon transcriptio 96.1 0.005 1.7E-07 62.0 5.3 38 252-289 30-67 (265)
131 1u94_A RECA protein, recombina 96.1 0.0048 1.6E-07 65.1 5.3 40 251-290 63-102 (356)
132 4b4t_K 26S protease regulatory 96.1 0.0028 9.7E-08 68.3 3.6 32 254-288 209-240 (428)
133 3t15_A Ribulose bisphosphate c 96.1 0.0027 9.2E-08 65.2 3.3 31 253-286 38-68 (293)
134 3co5_A Putative two-component 96.1 0.0025 8.4E-08 57.9 2.6 22 252-273 28-49 (143)
135 3io5_A Recombination and repai 96.1 0.0042 1.4E-07 63.8 4.6 40 252-291 29-70 (333)
136 1p9r_A General secretion pathw 96.1 0.0064 2.2E-07 65.6 6.3 52 235-286 151-202 (418)
137 4fcw_A Chaperone protein CLPB; 96.0 0.0044 1.5E-07 63.8 4.7 34 253-286 49-82 (311)
138 4b4t_J 26S protease regulatory 96.0 0.0031 1.1E-07 67.2 3.5 32 254-288 185-216 (405)
139 3eie_A Vacuolar protein sortin 96.0 0.007 2.4E-07 63.0 6.1 30 253-285 53-82 (322)
140 4b4t_L 26S protease subunit RP 96.0 0.0033 1.1E-07 68.0 3.6 32 254-288 218-249 (437)
141 3cf0_A Transitional endoplasmi 96.0 0.0061 2.1E-07 62.8 5.5 24 252-275 50-73 (301)
142 1z63_A Helicase of the SNF2/RA 96.0 0.014 4.8E-07 64.4 8.8 68 233-302 36-108 (500)
143 1xp8_A RECA protein, recombina 96.0 0.0054 1.8E-07 65.0 5.0 43 251-293 74-116 (366)
144 1sxj_A Activator 1 95 kDa subu 95.9 0.0092 3.2E-07 66.4 7.1 35 252-289 78-112 (516)
145 2xxa_A Signal recognition part 95.9 0.013 4.4E-07 63.5 7.8 58 253-310 102-163 (433)
146 3bgw_A DNAB-like replicative h 95.9 0.0075 2.6E-07 65.7 5.8 54 246-301 193-246 (444)
147 1sxj_C Activator 1 40 kDa subu 95.9 0.0074 2.5E-07 63.2 5.6 43 236-278 30-73 (340)
148 3crv_A XPD/RAD3 related DNA he 95.9 0.024 8.3E-07 63.5 10.1 64 235-302 4-70 (551)
149 2w00_A HSDR, R.ECOR124I; ATP-b 95.8 0.0096 3.3E-07 71.4 7.0 70 234-303 271-354 (1038)
150 2px0_A Flagellar biosynthesis 95.8 0.0075 2.6E-07 62.0 5.3 36 251-286 105-141 (296)
151 2z43_A DNA repair and recombin 95.8 0.0074 2.5E-07 62.9 5.3 54 251-304 107-167 (324)
152 2v3c_C SRP54, signal recogniti 95.8 0.0053 1.8E-07 66.5 4.2 58 252-309 100-160 (432)
153 2j9r_A Thymidine kinase; TK1, 95.8 0.01 3.4E-07 57.6 5.5 38 251-288 28-65 (214)
154 1cr0_A DNA primase/helicase; R 95.7 0.013 4.5E-07 59.9 6.8 49 251-300 35-84 (296)
155 2cvh_A DNA repair and recombin 95.7 0.013 4.5E-07 56.7 6.5 45 251-298 20-65 (220)
156 1d2n_A N-ethylmaleimide-sensit 95.7 0.0066 2.3E-07 61.4 4.4 23 252-274 65-87 (272)
157 2whx_A Serine protease/ntpase/ 95.7 0.0091 3.1E-07 67.9 6.0 59 242-302 179-238 (618)
158 4b4t_H 26S protease regulatory 95.7 0.0047 1.6E-07 66.8 3.3 33 253-288 245-277 (467)
159 2zan_A Vacuolar protein sortin 95.7 0.014 4.8E-07 63.6 7.2 35 252-288 168-202 (444)
160 1g5t_A COB(I)alamin adenosyltr 95.7 0.01 3.6E-07 56.6 5.3 58 251-311 28-89 (196)
161 3p32_A Probable GTPase RV1496/ 95.7 0.012 4.1E-07 62.1 6.3 37 251-287 79-115 (355)
162 1nlf_A Regulatory protein REPA 95.7 0.013 4.5E-07 59.4 6.4 50 251-301 30-89 (279)
163 1sxj_D Activator 1 41 kDa subu 95.6 0.0065 2.2E-07 63.6 4.1 51 238-288 44-98 (353)
164 2r6a_A DNAB helicase, replicat 95.6 0.014 4.9E-07 63.7 7.0 53 246-300 199-252 (454)
165 2qby_A CDC6 homolog 1, cell di 95.6 0.011 3.9E-07 62.3 6.0 49 237-285 26-82 (386)
166 1zu4_A FTSY; GTPase, signal re 95.6 0.0099 3.4E-07 61.8 5.4 35 252-286 106-140 (320)
167 1v5w_A DMC1, meiotic recombina 95.6 0.0094 3.2E-07 62.6 5.2 54 251-304 122-182 (343)
168 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.011 3.9E-07 60.8 5.5 33 252-287 124-156 (331)
169 1iqp_A RFCS; clamp loader, ext 95.6 0.011 3.9E-07 60.9 5.7 43 236-278 30-73 (327)
170 1u0j_A DNA replication protein 95.6 0.015 5.2E-07 58.3 6.3 42 233-274 82-127 (267)
171 2r62_A Cell division protease 95.6 0.0043 1.5E-07 62.5 2.3 22 254-275 47-68 (268)
172 2z0h_A DTMP kinase, thymidylat 95.6 0.012 4.2E-07 55.8 5.4 33 253-285 2-34 (197)
173 3pvs_A Replication-associated 95.5 0.015 5.2E-07 63.3 6.5 42 252-296 51-92 (447)
174 1hqc_A RUVB; extended AAA-ATPa 95.5 0.02 6.7E-07 59.2 7.1 47 252-301 39-86 (324)
175 1nks_A Adenylate kinase; therm 95.5 0.011 3.8E-07 55.8 4.8 33 253-285 3-35 (194)
176 1in4_A RUVB, holliday junction 95.4 0.0094 3.2E-07 62.3 4.5 24 252-275 52-75 (334)
177 2chq_A Replication factor C sm 95.4 0.012 4E-07 60.6 5.2 43 236-278 22-65 (319)
178 2ehv_A Hypothetical protein PH 95.4 0.023 7.9E-07 56.1 7.2 50 251-301 30-80 (251)
179 3rc3_A ATP-dependent RNA helic 95.4 0.013 4.3E-07 67.2 5.8 52 251-306 155-206 (677)
180 1w4r_A Thymidine kinase; type 95.4 0.013 4.5E-07 55.8 5.0 37 252-288 21-57 (195)
181 3hws_A ATP-dependent CLP prote 95.4 0.011 3.9E-07 62.4 5.1 31 252-285 52-82 (363)
182 2q6t_A DNAB replication FORK h 95.4 0.017 5.9E-07 62.9 6.7 50 251-301 200-250 (444)
183 2qp9_X Vacuolar protein sortin 95.4 0.011 3.7E-07 62.4 4.9 30 253-285 86-115 (355)
184 1n0w_A DNA repair protein RAD5 95.4 0.015 5E-07 57.3 5.6 51 251-301 24-81 (243)
185 3uk6_A RUVB-like 2; hexameric 95.4 0.013 4.4E-07 61.9 5.5 24 253-276 72-95 (368)
186 2r44_A Uncharacterized protein 95.4 0.0074 2.5E-07 62.9 3.5 36 239-275 35-70 (331)
187 2yvu_A Probable adenylyl-sulfa 95.4 0.015 5.3E-07 54.9 5.4 34 252-285 14-47 (186)
188 1lv7_A FTSH; alpha/beta domain 95.4 0.0079 2.7E-07 60.2 3.6 23 253-275 47-69 (257)
189 1q57_A DNA primase/helicase; d 95.4 0.0099 3.4E-07 65.9 4.6 50 251-301 242-292 (503)
190 1np6_A Molybdopterin-guanine d 95.4 0.017 5.8E-07 54.3 5.6 36 252-287 7-42 (174)
191 3e70_C DPA, signal recognition 95.4 0.027 9.4E-07 58.6 7.6 57 251-307 129-188 (328)
192 3b9q_A Chloroplast SRP recepto 95.3 0.035 1.2E-06 57.1 8.1 46 251-296 100-148 (302)
193 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.016 5.5E-07 58.2 5.5 35 252-286 5-39 (260)
194 3pfi_A Holliday junction ATP-d 95.3 0.014 5E-07 60.7 5.3 23 252-274 56-78 (338)
195 1sxj_B Activator 1 37 kDa subu 95.3 0.015 5.1E-07 59.9 5.3 42 236-277 26-68 (323)
196 3kb2_A SPBC2 prophage-derived 95.2 0.011 3.6E-07 54.9 3.7 23 253-275 3-25 (173)
197 1w5s_A Origin recognition comp 95.2 0.018 6.1E-07 61.6 6.0 27 251-277 50-78 (412)
198 3d8b_A Fidgetin-like protein 1 95.2 0.014 4.8E-07 61.6 5.0 32 252-286 118-149 (357)
199 3vfd_A Spastin; ATPase, microt 95.2 0.031 1.1E-06 59.6 7.7 34 252-288 149-182 (389)
200 1c4o_A DNA nucleotide excision 95.2 0.033 1.1E-06 63.8 8.4 66 234-302 8-76 (664)
201 3bs4_A Uncharacterized protein 95.2 0.018 6.1E-07 57.7 5.4 54 251-305 21-74 (260)
202 1jr3_A DNA polymerase III subu 95.2 0.018 6E-07 60.8 5.6 41 236-276 21-63 (373)
203 2pbr_A DTMP kinase, thymidylat 95.2 0.019 6.7E-07 54.2 5.4 33 253-285 2-34 (195)
204 1um8_A ATP-dependent CLP prote 95.1 0.024 8.2E-07 60.2 6.5 24 252-275 73-96 (376)
205 2x8a_A Nuclear valosin-contain 95.1 0.0091 3.1E-07 60.6 3.0 21 254-274 47-67 (274)
206 1qhx_A CPT, protein (chloramph 95.1 0.01 3.5E-07 55.5 3.1 24 252-275 4-27 (178)
207 2ffh_A Protein (FFH); SRP54, s 95.0 0.044 1.5E-06 59.0 8.2 59 252-310 99-160 (425)
208 1yrb_A ATP(GTP)binding protein 95.0 0.017 5.9E-07 57.7 4.7 35 251-286 14-48 (262)
209 1sxj_E Activator 1 40 kDa subu 95.0 0.016 5.6E-07 60.7 4.6 43 236-278 19-63 (354)
210 2og2_A Putative signal recogni 94.9 0.049 1.7E-06 57.3 8.1 56 252-307 158-216 (359)
211 1ly1_A Polynucleotide kinase; 94.9 0.014 4.7E-07 54.5 3.4 21 253-273 4-24 (181)
212 1ixz_A ATP-dependent metallopr 94.9 0.012 4E-07 58.8 3.1 22 254-275 52-73 (254)
213 2gno_A DNA polymerase III, gam 94.9 0.029 1E-06 57.8 6.1 55 243-297 9-69 (305)
214 1kht_A Adenylate kinase; phosp 94.8 0.016 5.5E-07 54.6 3.8 28 252-279 4-31 (192)
215 2plr_A DTMP kinase, probable t 94.8 0.032 1.1E-06 53.5 6.0 32 252-284 5-36 (213)
216 2c9o_A RUVB-like 1; hexameric 94.8 0.025 8.4E-07 61.9 5.6 23 253-275 65-87 (456)
217 3lw7_A Adenylate kinase relate 94.8 0.014 4.8E-07 54.0 3.2 29 252-284 2-30 (179)
218 3cmu_A Protein RECA, recombina 94.8 0.044 1.5E-06 69.3 8.4 40 251-290 1427-1466(2050)
219 3jvv_A Twitching mobility prot 94.8 0.031 1.1E-06 58.9 6.1 43 243-285 115-158 (356)
220 3trf_A Shikimate kinase, SK; a 94.8 0.018 6.1E-07 54.3 3.9 24 252-275 6-29 (185)
221 1z3i_X Similar to RAD54-like; 94.8 0.066 2.3E-06 61.1 9.3 68 234-302 55-136 (644)
222 1g8p_A Magnesium-chelatase 38 94.8 0.014 4.7E-07 61.1 3.3 23 253-275 47-69 (350)
223 1ls1_A Signal recognition part 94.7 0.067 2.3E-06 54.7 8.4 59 252-310 99-160 (295)
224 1ojl_A Transcriptional regulat 94.7 0.019 6.4E-07 59.2 4.2 32 252-283 26-57 (304)
225 2i1q_A DNA repair and recombin 94.7 0.018 6.2E-07 59.7 4.1 54 251-304 98-168 (322)
226 1rj9_A FTSY, signal recognitio 94.7 0.031 1.1E-06 57.5 5.6 37 251-287 102-138 (304)
227 2yhs_A FTSY, cell division pro 94.6 0.063 2.1E-06 58.6 8.1 45 252-296 294-341 (503)
228 2rhm_A Putative kinase; P-loop 94.6 0.018 6.2E-07 54.5 3.4 24 252-275 6-29 (193)
229 1nn5_A Similar to deoxythymidy 94.6 0.03 1E-06 53.9 5.1 34 252-285 10-43 (215)
230 3iij_A Coilin-interacting nucl 94.5 0.021 7.1E-07 53.6 3.6 24 252-275 12-35 (180)
231 3tau_A Guanylate kinase, GMP k 94.5 0.023 7.9E-07 54.9 4.0 25 250-274 7-31 (208)
232 3vaa_A Shikimate kinase, SK; s 94.5 0.025 8.7E-07 54.1 4.2 25 251-275 25-49 (199)
233 1iy2_A ATP-dependent metallopr 94.5 0.017 5.9E-07 58.5 3.1 22 254-275 76-97 (278)
234 2orv_A Thymidine kinase; TP4A 94.4 0.036 1.2E-06 54.3 5.0 37 252-288 20-56 (234)
235 1a5t_A Delta prime, HOLB; zinc 94.3 0.043 1.5E-06 57.2 5.9 37 241-277 12-50 (334)
236 1tev_A UMP-CMP kinase; ploop, 94.3 0.026 8.7E-07 53.4 3.8 23 253-275 5-27 (196)
237 1kag_A SKI, shikimate kinase I 94.3 0.022 7.5E-07 52.9 3.3 23 252-274 5-27 (173)
238 2ze6_A Isopentenyl transferase 94.3 0.025 8.4E-07 56.6 3.8 23 253-275 3-25 (253)
239 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.027 9.2E-07 62.1 4.4 35 240-275 31-65 (500)
240 2fna_A Conserved hypothetical 94.3 0.037 1.3E-06 57.6 5.3 35 238-275 20-54 (357)
241 3cm0_A Adenylate kinase; ATP-b 94.3 0.027 9.1E-07 53.0 3.8 23 253-275 6-28 (186)
242 4edh_A DTMP kinase, thymidylat 94.3 0.04 1.4E-06 53.6 5.1 41 252-292 7-48 (213)
243 3hu3_A Transitional endoplasmi 94.2 0.045 1.5E-06 60.2 6.0 31 252-285 239-269 (489)
244 3uie_A Adenylyl-sulfate kinase 94.2 0.085 2.9E-06 50.4 7.3 44 235-281 12-55 (200)
245 3o8b_A HCV NS3 protease/helica 94.2 0.013 4.5E-07 66.5 1.8 48 251-301 232-279 (666)
246 2cdn_A Adenylate kinase; phosp 94.2 0.028 9.4E-07 53.8 3.8 23 253-275 22-44 (201)
247 3pxg_A Negative regulator of g 94.2 0.051 1.7E-06 59.6 6.4 41 237-277 186-227 (468)
248 1zp6_A Hypothetical protein AT 94.2 0.022 7.4E-07 53.9 3.0 24 251-274 9-32 (191)
249 2iyv_A Shikimate kinase, SK; t 94.2 0.026 8.8E-07 53.1 3.5 24 252-275 3-26 (184)
250 3ug7_A Arsenical pump-driving 94.2 0.04 1.4E-06 57.9 5.3 38 252-289 27-64 (349)
251 1gvn_B Zeta; postsegregational 94.2 0.023 7.8E-07 58.1 3.2 24 252-275 34-57 (287)
252 2wwf_A Thymidilate kinase, put 94.2 0.043 1.5E-06 52.7 5.1 32 252-283 11-42 (212)
253 1via_A Shikimate kinase; struc 94.1 0.027 9.3E-07 52.6 3.5 23 253-275 6-28 (175)
254 4eun_A Thermoresistant glucoki 94.1 0.034 1.2E-06 53.2 4.2 25 251-275 29-53 (200)
255 2qen_A Walker-type ATPase; unk 94.1 0.041 1.4E-06 57.1 5.2 37 238-275 19-55 (350)
256 2c95_A Adenylate kinase 1; tra 94.1 0.032 1.1E-06 52.8 4.0 25 251-275 9-33 (196)
257 4ag6_A VIRB4 ATPase, type IV s 94.1 0.042 1.4E-06 58.7 5.3 57 251-311 35-91 (392)
258 3t61_A Gluconokinase; PSI-biol 94.0 0.028 9.7E-07 53.8 3.4 24 252-275 19-42 (202)
259 3fb4_A Adenylate kinase; psych 94.0 0.031 1.1E-06 54.0 3.7 22 254-275 3-24 (216)
260 3umf_A Adenylate kinase; rossm 94.0 0.033 1.1E-06 54.3 3.8 24 252-275 30-53 (217)
261 1gtv_A TMK, thymidylate kinase 94.0 0.014 4.8E-07 56.3 1.2 33 253-285 2-34 (214)
262 3e2i_A Thymidine kinase; Zn-bi 94.0 0.05 1.7E-06 52.6 5.0 39 251-289 28-66 (219)
263 3bfv_A CAPA1, CAPB2, membrane 94.0 0.076 2.6E-06 53.6 6.7 34 252-285 83-117 (271)
264 1rz3_A Hypothetical protein rb 94.0 0.052 1.8E-06 52.0 5.2 34 252-285 23-56 (201)
265 2jaq_A Deoxyguanosine kinase; 94.0 0.033 1.1E-06 53.0 3.8 23 253-275 2-24 (205)
266 2bwj_A Adenylate kinase 5; pho 93.9 0.031 1.1E-06 53.1 3.5 24 252-275 13-36 (199)
267 1e6c_A Shikimate kinase; phosp 93.9 0.034 1.2E-06 51.5 3.7 23 253-275 4-26 (173)
268 3v9p_A DTMP kinase, thymidylat 93.9 0.071 2.4E-06 52.3 6.1 42 251-292 25-71 (227)
269 3zq6_A Putative arsenical pump 93.9 0.047 1.6E-06 56.7 5.1 37 252-288 15-51 (324)
270 2www_A Methylmalonic aciduria 93.9 0.052 1.8E-06 57.0 5.5 37 251-287 74-110 (349)
271 3sr0_A Adenylate kinase; phosp 93.9 0.034 1.2E-06 53.8 3.7 22 254-275 3-24 (206)
272 1qf9_A UMP/CMP kinase, protein 93.9 0.032 1.1E-06 52.6 3.4 23 253-275 8-30 (194)
273 4eaq_A DTMP kinase, thymidylat 93.9 0.043 1.5E-06 54.0 4.4 33 252-285 27-59 (229)
274 2pez_A Bifunctional 3'-phospho 93.9 0.063 2.1E-06 50.2 5.4 34 252-285 6-39 (179)
275 1knq_A Gluconate kinase; ALFA/ 93.8 0.036 1.2E-06 51.6 3.7 24 252-275 9-32 (175)
276 1aky_A Adenylate kinase; ATP:A 93.8 0.042 1.4E-06 53.4 4.2 24 252-275 5-28 (220)
277 3cio_A ETK, tyrosine-protein k 93.8 0.086 2.9E-06 54.1 6.7 35 252-286 105-140 (299)
278 2vli_A Antibiotic resistance p 93.8 0.025 8.5E-07 53.0 2.4 23 252-274 6-28 (183)
279 2bbw_A Adenylate kinase 4, AK4 93.7 0.043 1.5E-06 54.4 4.2 25 251-275 27-51 (246)
280 2v54_A DTMP kinase, thymidylat 93.7 0.032 1.1E-06 53.2 3.2 33 252-286 5-37 (204)
281 2ce7_A Cell division protein F 93.7 0.033 1.1E-06 61.0 3.6 22 254-275 52-73 (476)
282 1c9k_A COBU, adenosylcobinamid 93.7 0.025 8.5E-07 53.3 2.3 45 254-302 2-46 (180)
283 3dl0_A Adenylate kinase; phosp 93.7 0.029 9.9E-07 54.3 2.8 21 254-274 3-23 (216)
284 2qm8_A GTPase/ATPase; G protei 93.7 0.06 2E-06 56.3 5.4 37 251-287 55-91 (337)
285 1zuh_A Shikimate kinase; alpha 93.7 0.042 1.4E-06 50.8 3.8 23 253-275 9-31 (168)
286 2ewv_A Twitching motility prot 93.7 0.067 2.3E-06 56.7 5.8 37 250-286 135-172 (372)
287 2eyu_A Twitching motility prot 93.7 0.083 2.8E-06 53.0 6.2 37 250-286 24-61 (261)
288 1ye8_A Protein THEP1, hypothet 93.6 0.042 1.4E-06 51.7 3.8 23 253-275 2-24 (178)
289 1tf7_A KAIC; homohexamer, hexa 93.6 0.083 2.8E-06 58.8 6.8 49 251-300 281-329 (525)
290 2qor_A Guanylate kinase; phosp 93.6 0.035 1.2E-06 53.3 3.3 25 251-275 12-36 (204)
291 1e9r_A Conjugal transfer prote 93.6 0.064 2.2E-06 58.1 5.7 41 253-293 55-95 (437)
292 1y63_A LMAJ004144AAA protein; 93.6 0.042 1.4E-06 51.8 3.7 23 252-274 11-33 (184)
293 2bdt_A BH3686; alpha-beta prot 93.6 0.038 1.3E-06 52.2 3.4 30 253-285 4-33 (189)
294 4a74_A DNA repair and recombin 93.6 0.051 1.7E-06 52.8 4.4 27 251-277 25-51 (231)
295 2xb4_A Adenylate kinase; ATP-b 93.6 0.042 1.4E-06 53.6 3.8 23 253-275 2-24 (223)
296 2oze_A ORF delta'; para, walke 93.6 0.069 2.4E-06 54.5 5.6 33 253-285 37-71 (298)
297 1zak_A Adenylate kinase; ATP:A 93.5 0.035 1.2E-06 54.0 3.2 24 252-275 6-29 (222)
298 1m7g_A Adenylylsulfate kinase; 93.5 0.066 2.3E-06 51.6 5.1 49 235-286 12-61 (211)
299 3tlx_A Adenylate kinase 2; str 93.5 0.043 1.5E-06 54.4 3.8 24 252-275 30-53 (243)
300 1g41_A Heat shock protein HSLU 93.5 0.054 1.8E-06 58.5 4.7 23 253-275 52-74 (444)
301 2pt5_A Shikimate kinase, SK; a 93.4 0.049 1.7E-06 50.2 3.8 23 253-275 2-24 (168)
302 1w36_C RECC, exodeoxyribonucle 93.4 0.03 1E-06 68.1 2.9 77 587-663 656-757 (1122)
303 1zd8_A GTP:AMP phosphotransfer 93.4 0.035 1.2E-06 54.3 2.8 24 252-275 8-31 (227)
304 1ak2_A Adenylate kinase isoenz 93.4 0.047 1.6E-06 53.6 3.8 24 252-275 17-40 (233)
305 3tr0_A Guanylate kinase, GMP k 93.4 0.055 1.9E-06 51.6 4.2 24 251-274 7-30 (205)
306 1ukz_A Uridylate kinase; trans 93.3 0.04 1.4E-06 52.7 3.0 22 253-274 17-38 (203)
307 1kgd_A CASK, peripheral plasma 93.3 0.054 1.9E-06 50.9 3.9 24 252-275 6-29 (180)
308 3iqw_A Tail-anchored protein t 93.3 0.067 2.3E-06 55.8 4.9 38 251-288 16-53 (334)
309 3lv8_A DTMP kinase, thymidylat 93.2 0.13 4.5E-06 50.7 6.7 45 252-296 28-74 (236)
310 1qvr_A CLPB protein; coiled co 93.2 0.11 3.7E-06 61.4 7.2 50 238-287 177-234 (854)
311 1ihu_A Arsenical pump-driving 93.2 0.087 3E-06 59.5 6.1 38 251-288 8-45 (589)
312 3cmw_A Protein RECA, recombina 93.2 0.067 2.3E-06 66.8 5.4 45 251-295 383-427 (1706)
313 3pxi_A Negative regulator of g 93.2 0.099 3.4E-06 60.9 6.7 34 253-286 523-556 (758)
314 3m6a_A ATP-dependent protease 93.1 0.052 1.8E-06 60.6 4.1 25 251-275 108-132 (543)
315 3be4_A Adenylate kinase; malar 93.1 0.05 1.7E-06 52.8 3.5 23 253-275 7-29 (217)
316 3cf2_A TER ATPase, transitiona 93.1 0.029 9.8E-07 65.2 2.0 20 254-273 241-260 (806)
317 2p67_A LAO/AO transport system 93.1 0.076 2.6E-06 55.5 5.1 36 251-286 56-91 (341)
318 2p5t_B PEZT; postsegregational 93.1 0.035 1.2E-06 55.5 2.3 24 252-275 33-56 (253)
319 2j41_A Guanylate kinase; GMP, 93.0 0.059 2E-06 51.5 3.8 25 251-275 6-30 (207)
320 1e4v_A Adenylate kinase; trans 93.0 0.05 1.7E-06 52.6 3.2 22 254-275 3-24 (214)
321 4tmk_A Protein (thymidylate ki 92.9 0.094 3.2E-06 50.9 5.1 48 252-299 4-53 (213)
322 2oap_1 GSPE-2, type II secreti 92.9 0.057 2E-06 59.7 4.0 48 235-284 245-292 (511)
323 3c8u_A Fructokinase; YP_612366 92.9 0.1 3.5E-06 50.2 5.4 36 250-285 21-56 (208)
324 4gp7_A Metallophosphoesterase; 92.9 0.041 1.4E-06 51.3 2.4 20 251-270 9-28 (171)
325 1byi_A Dethiobiotin synthase; 92.9 0.1 3.5E-06 50.6 5.4 35 253-287 4-38 (224)
326 3cmw_A Protein RECA, recombina 92.8 0.08 2.7E-06 66.1 5.4 48 251-298 34-81 (1706)
327 2dhr_A FTSH; AAA+ protein, hex 92.8 0.046 1.6E-06 60.2 3.0 22 254-275 67-88 (499)
328 3lda_A DNA repair protein RAD5 92.8 0.093 3.2E-06 56.1 5.2 39 251-289 178-222 (400)
329 3pxi_A Negative regulator of g 92.7 0.11 3.9E-06 60.4 6.4 40 236-275 185-225 (758)
330 2wsm_A Hydrogenase expression/ 92.7 0.092 3.1E-06 50.7 4.7 34 251-285 30-63 (221)
331 3mwy_W Chromo domain-containin 92.6 0.21 7E-06 58.6 8.4 68 233-302 235-308 (800)
332 1hyq_A MIND, cell division inh 92.6 0.11 3.9E-06 51.7 5.4 34 253-286 5-38 (263)
333 4dzz_A Plasmid partitioning pr 92.6 0.092 3.2E-06 50.0 4.5 35 253-287 4-38 (206)
334 2ph1_A Nucleotide-binding prot 92.6 0.11 3.6E-06 52.1 5.1 35 252-286 20-54 (262)
335 2d7d_A Uvrabc system protein B 92.6 0.23 7.9E-06 56.8 8.5 65 235-302 13-80 (661)
336 3end_A Light-independent proto 92.5 0.11 3.7E-06 53.3 5.2 33 253-285 43-75 (307)
337 3ld9_A DTMP kinase, thymidylat 92.5 0.13 4.3E-06 50.4 5.3 47 252-298 22-71 (223)
338 3kjh_A CO dehydrogenase/acetyl 92.4 0.058 2E-06 53.1 2.9 33 253-286 3-35 (254)
339 3cpe_A Terminase, DNA packagin 92.4 0.34 1.2E-05 54.6 9.6 66 234-301 163-230 (592)
340 1cke_A CK, MSSA, protein (cyti 92.4 0.077 2.6E-06 51.5 3.8 24 252-275 6-29 (227)
341 2woo_A ATPase GET3; tail-ancho 92.4 0.1 3.5E-06 54.2 4.9 37 251-287 19-55 (329)
342 1g3q_A MIND ATPase, cell divis 92.4 0.12 4.1E-06 50.5 5.1 35 253-287 5-39 (237)
343 3k1j_A LON protease, ATP-depen 92.4 0.11 3.6E-06 59.0 5.3 37 238-275 48-84 (604)
344 3q9l_A Septum site-determining 92.4 0.12 4E-06 51.3 5.1 33 253-285 5-37 (260)
345 3cmu_A Protein RECA, recombina 92.3 0.094 3.2E-06 66.3 5.2 45 251-295 1081-1125(2050)
346 3io3_A DEHA2D07832P; chaperone 92.3 0.1 3.6E-06 54.6 4.8 38 251-288 18-57 (348)
347 3b85_A Phosphate starvation-in 92.3 0.16 5.5E-06 49.0 5.8 39 234-274 7-45 (208)
348 1cp2_A CP2, nitrogenase iron p 92.3 0.11 3.8E-06 51.9 4.8 31 255-285 5-35 (269)
349 2afh_E Nitrogenase iron protei 92.2 0.12 4.3E-06 52.3 5.2 31 255-285 6-36 (289)
350 1jjv_A Dephospho-COA kinase; P 92.2 0.074 2.5E-06 50.9 3.2 21 253-273 4-24 (206)
351 3hjn_A DTMP kinase, thymidylat 92.1 0.15 5.2E-06 48.7 5.4 34 253-286 2-35 (197)
352 1pzn_A RAD51, DNA repair and r 92.1 0.12 4E-06 54.3 4.9 26 251-276 131-156 (349)
353 1ex7_A Guanylate kinase; subst 92.0 0.093 3.2E-06 49.8 3.6 22 253-274 3-24 (186)
354 1svm_A Large T antigen; AAA+ f 91.9 0.1 3.6E-06 55.2 4.3 24 251-274 169-192 (377)
355 1qvr_A CLPB protein; coiled co 91.9 0.1 3.5E-06 61.7 4.7 33 253-285 590-622 (854)
356 2i3b_A HCR-ntpase, human cance 91.9 0.12 4.2E-06 49.0 4.3 27 253-279 3-29 (189)
357 3a00_A Guanylate kinase, GMP k 91.9 0.096 3.3E-06 49.4 3.5 23 253-275 3-25 (186)
358 3cwq_A Para family chromosome 91.7 0.16 5.3E-06 49.0 4.9 32 253-285 3-34 (209)
359 1r6b_X CLPA protein; AAA+, N-t 91.6 0.18 6E-06 58.8 6.2 42 236-277 191-233 (758)
360 2hf9_A Probable hydrogenase ni 91.6 0.15 5.1E-06 49.4 4.7 54 252-309 39-94 (226)
361 2o0j_A Terminase, DNA packagin 91.6 0.6 2.1E-05 49.4 9.6 66 234-301 163-230 (385)
362 2woj_A ATPase GET3; tail-ancho 91.5 0.13 4.6E-06 54.0 4.5 38 251-288 18-57 (354)
363 3ake_A Cytidylate kinase; CMP 91.5 0.12 4.1E-06 49.2 3.8 23 253-275 4-26 (208)
364 3cf2_A TER ATPase, transitiona 91.4 0.067 2.3E-06 62.2 2.3 53 254-309 514-576 (806)
365 2qmh_A HPR kinase/phosphorylas 91.4 0.11 3.6E-06 49.7 3.3 23 252-274 35-57 (205)
366 1ltq_A Polynucleotide kinase; 91.3 0.1 3.6E-06 53.1 3.4 21 253-273 4-24 (301)
367 3ea0_A ATPase, para family; al 91.3 0.15 5.3E-06 49.9 4.6 35 253-287 7-42 (245)
368 3r20_A Cytidylate kinase; stru 91.3 0.12 4.3E-06 50.7 3.8 24 252-275 10-33 (233)
369 1lvg_A Guanylate kinase, GMP k 91.3 0.12 4.2E-06 49.3 3.7 24 252-275 5-28 (198)
370 3ney_A 55 kDa erythrocyte memb 91.3 0.14 4.7E-06 49.0 3.9 24 251-274 19-42 (197)
371 1r6b_X CLPA protein; AAA+, N-t 91.2 0.24 8.2E-06 57.6 6.8 30 253-285 490-519 (758)
372 3igf_A ALL4481 protein; two-do 91.2 0.1 3.4E-06 55.3 3.2 35 253-287 4-38 (374)
373 2if2_A Dephospho-COA kinase; a 91.2 0.11 3.7E-06 49.6 3.2 21 253-273 3-23 (204)
374 3crm_A TRNA delta(2)-isopenten 91.2 0.1 3.4E-06 54.0 3.1 23 253-275 7-29 (323)
375 1uj2_A Uridine-cytidine kinase 91.0 0.11 3.8E-06 51.6 3.2 23 253-275 24-46 (252)
376 2v9p_A Replication protein E1; 91.0 0.17 5.7E-06 51.9 4.5 33 251-286 126-158 (305)
377 3u4q_B ATP-dependent helicase/ 90.9 0.12 4.2E-06 63.2 4.1 76 587-662 585-693 (1166)
378 2qt1_A Nicotinamide riboside k 90.7 0.12 4E-06 49.6 2.9 22 252-273 22-43 (207)
379 1tf7_A KAIC; homohexamer, hexa 90.7 0.32 1.1E-05 53.9 6.9 37 251-287 39-77 (525)
380 3fwy_A Light-independent proto 90.6 0.24 8.2E-06 51.1 5.4 35 252-286 49-83 (314)
381 3fkq_A NTRC-like two-domain pr 90.6 0.2 6.8E-06 53.0 4.8 34 253-286 146-179 (373)
382 3asz_A Uridine kinase; cytidin 90.5 0.15 5E-06 49.0 3.4 24 252-275 7-30 (211)
383 1nij_A Hypothetical protein YJ 90.5 0.13 4.3E-06 53.2 3.1 34 252-287 5-38 (318)
384 1uf9_A TT1252 protein; P-loop, 90.4 0.14 4.8E-06 48.6 3.2 22 252-273 9-30 (203)
385 3lnc_A Guanylate kinase, GMP k 90.3 0.12 4E-06 50.6 2.5 22 251-272 27-48 (231)
386 3la6_A Tyrosine-protein kinase 90.3 0.25 8.5E-06 50.2 5.0 35 252-286 93-128 (286)
387 3k9g_A PF-32 protein; ssgcid, 90.2 0.17 5.8E-06 50.6 3.7 32 253-285 30-61 (267)
388 2xj4_A MIPZ; replication, cell 90.2 0.22 7.4E-06 50.5 4.5 33 253-285 7-39 (286)
389 1sq5_A Pantothenate kinase; P- 90.2 0.28 9.5E-06 50.4 5.4 35 251-285 80-116 (308)
390 1wcv_1 SOJ, segregation protei 90.1 0.15 5.3E-06 50.7 3.3 33 253-285 9-41 (257)
391 2grj_A Dephospho-COA kinase; T 90.0 0.19 6.6E-06 47.8 3.7 23 252-274 13-35 (192)
392 1a7j_A Phosphoribulokinase; tr 90.0 0.22 7.5E-06 50.7 4.4 35 251-285 5-39 (290)
393 3nwj_A ATSK2; P loop, shikimat 89.9 0.19 6.5E-06 50.0 3.7 24 252-275 49-72 (250)
394 1znw_A Guanylate kinase, GMP k 89.9 0.19 6.6E-06 48.1 3.7 25 251-275 20-44 (207)
395 3tqf_A HPR(Ser) kinase; transf 89.8 0.23 7.8E-06 46.3 3.8 21 253-273 18-38 (181)
396 3pg5_A Uncharacterized protein 89.7 0.14 4.9E-06 53.9 2.8 33 253-285 4-36 (361)
397 1f2t_A RAD50 ABC-ATPase; DNA d 89.7 0.21 7.1E-06 45.4 3.5 24 252-275 24-47 (149)
398 1z6g_A Guanylate kinase; struc 89.6 0.19 6.4E-06 48.8 3.4 31 251-284 23-53 (218)
399 1s96_A Guanylate kinase, GMP k 89.6 0.23 8E-06 48.3 4.0 24 251-274 16-39 (219)
400 3d3q_A TRNA delta(2)-isopenten 89.6 0.17 5.9E-06 52.6 3.2 23 253-275 9-31 (340)
401 1vht_A Dephospho-COA kinase; s 89.6 0.19 6.5E-06 48.5 3.4 22 252-273 5-26 (218)
402 4e22_A Cytidylate kinase; P-lo 89.5 0.2 7E-06 49.7 3.6 24 251-274 27-50 (252)
403 4hlc_A DTMP kinase, thymidylat 89.5 0.49 1.7E-05 45.4 6.2 46 253-299 4-50 (205)
404 3tqc_A Pantothenate kinase; bi 89.5 0.27 9.2E-06 50.8 4.6 35 253-287 94-130 (321)
405 3f9v_A Minichromosome maintena 89.3 0.17 5.9E-06 57.0 3.2 22 253-274 329-350 (595)
406 1ypw_A Transitional endoplasmi 89.3 0.16 5.5E-06 59.5 3.0 22 252-273 239-260 (806)
407 3zvl_A Bifunctional polynucleo 89.2 0.15 5.2E-06 54.8 2.6 23 251-273 258-280 (416)
408 2axn_A 6-phosphofructo-2-kinas 89.0 0.51 1.8E-05 52.2 6.7 31 252-282 36-66 (520)
409 1ypw_A Transitional endoplasmi 89.0 0.13 4.3E-06 60.4 1.9 24 252-275 512-535 (806)
410 1htw_A HI0065; nucleotide-bind 89.0 0.18 6E-06 46.4 2.5 33 251-284 33-65 (158)
411 3ez2_A Plasmid partition prote 88.9 0.28 9.5E-06 52.3 4.3 52 235-286 84-150 (398)
412 1odf_A YGR205W, hypothetical 3 88.9 0.25 8.6E-06 50.3 3.8 26 252-277 32-57 (290)
413 3gmt_A Adenylate kinase; ssgci 88.9 0.21 7.2E-06 48.9 3.1 22 254-275 11-32 (230)
414 1x6v_B Bifunctional 3'-phospho 88.8 0.37 1.3E-05 54.3 5.4 51 235-285 35-86 (630)
415 2f6r_A COA synthase, bifunctio 88.8 0.2 6.8E-06 50.8 3.0 20 253-272 77-96 (281)
416 3exa_A TRNA delta(2)-isopenten 88.8 0.18 6E-06 51.8 2.5 24 252-275 4-27 (322)
417 1z6t_A APAF-1, apoptotic prote 88.6 0.34 1.2E-05 54.4 5.1 38 237-274 130-170 (591)
418 4akg_A Glutathione S-transfera 88.6 0.26 9E-06 64.4 4.5 32 242-274 1259-1290(2695)
419 2ga8_A Hypothetical 39.9 kDa p 88.6 0.25 8.6E-06 51.5 3.6 23 253-275 26-48 (359)
420 3a8t_A Adenylate isopentenyltr 88.5 0.16 5.5E-06 52.7 2.0 24 252-275 41-64 (339)
421 2jeo_A Uridine-cytidine kinase 88.5 0.28 9.5E-06 48.4 3.7 25 251-275 25-49 (245)
422 3tmk_A Thymidylate kinase; pho 88.4 0.27 9.1E-06 47.8 3.4 27 251-277 5-31 (216)
423 3aez_A Pantothenate kinase; tr 88.4 0.38 1.3E-05 49.5 4.9 36 251-286 90-127 (312)
424 2gza_A Type IV secretion syste 88.4 0.22 7.6E-06 52.4 3.1 44 241-285 166-209 (361)
425 1q3t_A Cytidylate kinase; nucl 88.4 0.34 1.2E-05 47.5 4.3 24 252-275 17-40 (236)
426 3foz_A TRNA delta(2)-isopenten 88.4 0.23 7.9E-06 50.8 3.1 24 252-275 11-34 (316)
427 2pt7_A CAG-ALFA; ATPase, prote 88.2 0.18 6E-06 52.5 2.1 45 241-286 162-206 (330)
428 3ice_A Transcription terminati 88.1 0.31 1.1E-05 51.4 3.9 62 238-299 160-226 (422)
429 3kta_A Chromosome segregation 88.0 0.27 9.2E-06 45.8 3.2 23 252-274 27-49 (182)
430 2gks_A Bifunctional SAT/APS ki 87.9 0.63 2.2E-05 51.8 6.5 42 252-298 373-414 (546)
431 3eph_A TRNA isopentenyltransfe 87.6 0.29 1E-05 51.9 3.4 24 252-275 3-26 (409)
432 3l0o_A Transcription terminati 87.5 0.34 1.2E-05 51.0 3.7 40 240-279 163-203 (427)
433 1ihu_A Arsenical pump-driving 87.5 0.49 1.7E-05 53.3 5.4 36 251-286 327-362 (589)
434 3qks_A DNA double-strand break 87.4 0.34 1.2E-05 46.4 3.5 25 252-276 24-48 (203)
435 2ocp_A DGK, deoxyguanosine kin 87.4 0.26 8.8E-06 48.5 2.7 23 253-275 4-26 (241)
436 2h92_A Cytidylate kinase; ross 87.2 0.3 1E-05 47.0 3.0 22 253-274 5-26 (219)
437 2f1r_A Molybdopterin-guanine d 87.2 0.35 1.2E-05 45.1 3.3 29 253-281 4-32 (171)
438 1tf5_A Preprotein translocase 87.1 1.5 5.3E-05 50.6 9.2 64 234-301 83-146 (844)
439 3ez9_A Para; DNA binding, wing 86.9 0.26 9.1E-06 52.6 2.7 52 235-286 87-153 (403)
440 2fsf_A Preprotein translocase 86.7 1.2 4E-05 51.6 7.9 64 234-301 74-137 (853)
441 2obl_A ESCN; ATPase, hydrolase 85.9 0.53 1.8E-05 49.2 4.2 48 241-289 60-109 (347)
442 1tq4_A IIGP1, interferon-induc 85.6 0.5 1.7E-05 50.6 4.0 37 236-273 55-91 (413)
443 2ipc_A Preprotein translocase 85.1 1.3 4.3E-05 51.6 7.1 64 234-301 79-142 (997)
444 1p5z_B DCK, deoxycytidine kina 84.9 0.18 6.3E-06 50.3 0.2 24 252-275 25-48 (263)
445 1m8p_A Sulfate adenylyltransfe 84.8 0.75 2.6E-05 51.5 5.0 34 253-286 398-432 (573)
446 2dyk_A GTP-binding protein; GT 84.7 0.51 1.8E-05 42.3 3.1 20 254-273 4-23 (161)
447 3of5_A Dethiobiotin synthetase 84.6 0.85 2.9E-05 44.5 4.8 34 253-286 6-40 (228)
448 1sky_E F1-ATPase, F1-ATP synth 84.6 0.76 2.6E-05 49.8 4.8 51 252-302 152-205 (473)
449 2pcj_A ABC transporter, lipopr 84.6 0.51 1.8E-05 45.9 3.2 34 251-285 30-64 (224)
450 2f9l_A RAB11B, member RAS onco 84.6 0.5 1.7E-05 44.6 3.0 20 254-273 8-27 (199)
451 1nkt_A Preprotein translocase 84.5 1.7 6E-05 50.4 7.9 64 234-301 111-174 (922)
452 1nrj_B SR-beta, signal recogni 84.5 0.52 1.8E-05 45.1 3.2 23 252-274 13-35 (218)
453 2cbz_A Multidrug resistance-as 84.4 0.59 2E-05 46.0 3.6 23 251-273 31-53 (237)
454 3tif_A Uncharacterized ABC tra 84.3 0.59 2E-05 45.9 3.6 34 251-285 31-65 (235)
455 1sgw_A Putative ABC transporte 84.2 0.56 1.9E-05 45.4 3.2 35 251-286 35-70 (214)
456 3vkg_A Dynein heavy chain, cyt 84.1 0.6 2E-05 61.8 4.3 57 241-300 1295-1352(3245)
457 2onk_A Molybdate/tungstate ABC 84.0 0.59 2E-05 46.1 3.4 33 252-285 25-58 (240)
458 1oix_A RAS-related protein RAB 83.8 0.52 1.8E-05 44.3 2.8 22 253-274 31-52 (191)
459 2wji_A Ferrous iron transport 83.7 0.58 2E-05 42.6 3.0 20 253-272 5-24 (165)
460 1kao_A RAP2A; GTP-binding prot 83.6 0.64 2.2E-05 41.7 3.2 20 254-273 6-25 (167)
461 1b0u_A Histidine permease; ABC 83.6 0.67 2.3E-05 46.3 3.6 34 251-285 32-66 (262)
462 1bif_A 6-phosphofructo-2-kinas 83.5 0.65 2.2E-05 50.6 3.8 28 253-280 41-68 (469)
463 1z2a_A RAS-related protein RAB 83.4 0.61 2.1E-05 42.1 3.0 20 254-273 8-27 (168)
464 2d2e_A SUFC protein; ABC-ATPas 83.2 0.72 2.4E-05 45.7 3.6 36 251-286 29-66 (250)
465 2olj_A Amino acid ABC transpor 83.1 0.72 2.4E-05 46.2 3.6 34 251-285 50-84 (263)
466 1g6h_A High-affinity branched- 83.1 0.68 2.3E-05 46.1 3.4 35 251-285 33-67 (257)
467 3gfo_A Cobalt import ATP-bindi 83.0 0.69 2.4E-05 46.6 3.4 36 251-286 34-69 (275)
468 2zu0_C Probable ATP-dependent 83.0 0.76 2.6E-05 46.0 3.8 36 251-286 46-83 (267)
469 1ji0_A ABC transporter; ATP bi 82.9 0.71 2.4E-05 45.4 3.4 34 251-285 32-66 (240)
470 1vpl_A ABC transporter, ATP-bi 82.9 0.74 2.5E-05 45.8 3.6 36 251-286 41-76 (256)
471 2pze_A Cystic fibrosis transme 82.8 0.74 2.5E-05 45.0 3.5 24 251-274 34-57 (229)
472 2ged_A SR-beta, signal recogni 82.8 0.66 2.3E-05 43.2 3.1 22 252-273 49-70 (193)
473 2qi9_C Vitamin B12 import ATP- 82.7 0.74 2.5E-05 45.6 3.5 34 251-285 26-59 (249)
474 2a5y_B CED-4; apoptosis; HET: 82.7 1 3.4E-05 50.2 5.0 22 252-273 153-174 (549)
475 1mv5_A LMRA, multidrug resista 82.7 0.66 2.2E-05 45.8 3.1 36 251-286 28-63 (243)
476 3fdi_A Uncharacterized protein 82.6 0.73 2.5E-05 44.0 3.3 24 252-275 7-30 (201)
477 1wms_A RAB-9, RAB9, RAS-relate 82.5 0.7 2.4E-05 42.2 3.1 20 254-273 10-29 (177)
478 2ghi_A Transport protein; mult 82.5 0.77 2.6E-05 45.8 3.6 34 251-285 46-79 (260)
479 2lkc_A Translation initiation 82.3 0.94 3.2E-05 41.3 3.9 22 251-272 8-29 (178)
480 2ce2_X GTPase HRAS; signaling 82.3 0.69 2.3E-05 41.4 2.9 20 254-273 6-25 (166)
481 2rcn_A Probable GTPase ENGC; Y 82.3 1.1 3.6E-05 47.0 4.6 29 242-272 208-236 (358)
482 2ff7_A Alpha-hemolysin translo 82.3 0.77 2.6E-05 45.4 3.4 35 251-285 35-69 (247)
483 1ky3_A GTP-binding protein YPT 82.2 0.73 2.5E-05 42.2 3.1 20 254-273 11-30 (182)
484 2ixe_A Antigen peptide transpo 82.0 0.82 2.8E-05 45.9 3.6 35 251-286 45-80 (271)
485 1ek0_A Protein (GTP-binding pr 81.9 0.79 2.7E-05 41.3 3.2 20 254-273 6-25 (170)
486 1g16_A RAS-related protein SEC 81.8 0.69 2.4E-05 41.8 2.7 20 254-273 6-25 (170)
487 1u8z_A RAS-related protein RAL 81.8 0.77 2.6E-05 41.3 3.0 20 254-273 7-26 (168)
488 2erx_A GTP-binding protein DI- 81.7 0.79 2.7E-05 41.4 3.1 20 254-273 6-25 (172)
489 3sop_A Neuronal-specific septi 81.7 0.64 2.2E-05 46.7 2.6 23 254-276 5-27 (270)
490 2nq2_C Hypothetical ABC transp 81.7 0.84 2.9E-05 45.3 3.4 23 251-273 31-53 (253)
491 2yz2_A Putative ABC transporte 81.6 0.87 3E-05 45.6 3.6 35 251-286 33-68 (266)
492 2nzj_A GTP-binding protein REM 81.6 0.8 2.7E-05 41.6 3.1 19 254-272 7-25 (175)
493 1z0j_A RAB-22, RAS-related pro 81.5 0.8 2.7E-05 41.3 3.1 20 254-273 9-28 (170)
494 4g1u_C Hemin import ATP-bindin 81.5 0.86 2.9E-05 45.6 3.5 36 251-286 37-72 (266)
495 2yyz_A Sugar ABC transporter, 81.5 0.89 3.1E-05 47.6 3.7 23 251-273 29-51 (359)
496 2zej_A Dardarin, leucine-rich 81.4 0.68 2.3E-05 43.0 2.6 20 254-273 5-24 (184)
497 2ihy_A ABC transporter, ATP-bi 81.3 0.88 3E-05 45.9 3.5 36 251-286 47-82 (279)
498 3qf7_A RAD50; ABC-ATPase, ATPa 81.3 0.89 3E-05 47.8 3.7 24 252-275 24-47 (365)
499 1z47_A CYSA, putative ABC-tran 81.2 0.9 3.1E-05 47.5 3.6 22 251-272 41-62 (355)
500 3q85_A GTP-binding protein REM 81.2 0.83 2.8E-05 41.3 3.0 19 254-272 5-23 (169)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=6.9e-102 Score=897.88 Aligned_cols=605 Identities=39% Similarity=0.546 Sum_probs=488.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcchHHHhhcCCCcccccccccceeEeeeeeecCCeEEE
Q 038763 11 SRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVSTSTGLGGMHLV 90 (690)
Q Consensus 11 ~~~~~~~~~~~~l~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~g~~g~~~~ 90 (690)
+++++|+++|.+||++||++|+++++++++++| +++++++ |+||++|.+.+.++|++|++++
T Consensus 2 ~~~~~~~~~~~~Ll~~E~~~e~~~~~~~~~~~~-----------~~~~~~~-------G~~~~~l~~~~~~~~~~g~~~~ 63 (646)
T 4b3f_X 2 AAVESFVTKQLDLLELERDAEVEERRSWQENIS-----------LKELQSR-------GVCLLKLQVSSQRTGLYGRLLV 63 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-----------HHHHGGG-------TSEEEEEEEEEEEECSSSCEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------HHHHHhC-------CceecceEEEEEEecCCCeEEE
Confidence 579999999999999999999999999999988 3455555 5689999999999999999999
Q ss_pred EEEecC---CCCCCCCCCCCCCEEEEEecCCCCCCCCcceeEEEEEEcCCceEEEEEEecCCCCCccccccCceeEEeEE
Q 038763 91 LFRVEG---NHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGEDGCTISVALESRHGDPTFSKLFGKSVRIDRI 167 (690)
Q Consensus 91 ~~~~~~---~~~~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~g~V~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (690)
+|.... ...+|+|.|++||+|+|+..++.+. ..+.|+|++++. ..|+|+++..... .........++ +
T Consensus 64 ~~~~~~~~~~~~l~~~~~~~Gd~v~~~~~~~~~~---~~~~g~v~~~~~--~~i~v~~~~~~~~-~~~~~~~~~~~---~ 134 (646)
T 4b3f_X 64 TFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGS---QLATGILTRVTQ--KSVTVAFDESHDF-QLSLDRENSYR---L 134 (646)
T ss_dssp EEEESCC---CCCCCCCCCTTCEEEEEETTTTSC---CCEEEEEEEEET--TEEEEECC--------CCCSSCCEE---E
T ss_pred EEEecCCCCCCCCccCCCCCCCEEEEEecCCCCC---ceEEEEEEEEeC--CEEEEEECCcccc-ccccCCCCcEE---E
Confidence 997642 4478899999999999986554432 357999999987 6899999753211 11111123354 4
Q ss_pred eeccchhhHHHHHHHHHHHHhccccCCCCchhHHHhhhCCCccchhhhccccccchhhhhcCCCCCCCCHHHHHHHHHHh
Q 038763 168 QGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIALGL 247 (690)
Q Consensus 168 ~~~~~~~t~~r~~~al~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~~Q~~Av~~al 247 (690)
++++|++||+||..||..+.... ..+...+.+.|||..++....... .. ......||++|++||..||
T Consensus 135 ~~~~~~~~~~r~~~al~~l~~~~---~~~~~~l~~~l~~~~~p~~~~~~~-~~--------~~~~~~LN~~Q~~AV~~al 202 (646)
T 4b3f_X 135 LKLANDVTYRRLKKALIALKKYH---SGPASSLIEVLFGRSAPSPASEIH-PL--------TFFNTCLDTSQKEAVLFAL 202 (646)
T ss_dssp EEECCHHHHHHHHHHHHHHHTCC---SSTTHHHHHHHTTSSCCCCCCCCC-CC--------CCSSTTCCHHHHHHHHHHH
T ss_pred EEeccchHHHHHHHHHHHhhhcc---cCchHHHHHHHcCCCCCCCccccC-cc--------cccCCCCCHHHHHHHHHHh
Confidence 56799999999999999997653 234556788899886653221111 01 1122469999999999999
Q ss_pred cCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCceeecCCCcccCchhccccHHHH
Q 038763 248 NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEI 327 (690)
Q Consensus 248 ~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRiG~~~r~~~~~~~~~l~~~ 327 (690)
.. .+++|||||||||||+|++++|.+++++|.+||||||||.|||+|++||...+.+++|+|+++++.+.+..++++..
T Consensus 203 ~~-~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~~~r~~~~~~~~~l~~~ 281 (646)
T 4b3f_X 203 SQ-KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGHPARLLESIQQHSLDAV 281 (646)
T ss_dssp HC-SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECSCCSSCCHHHHTTBHHHH
T ss_pred cC-CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEecchhhhhhhhhhhhHHHH
Confidence 75 47999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEcccccch
Q 038763 328 VKSKLASFVAEFERKKSDLRKDLRQCLK------DDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401 (690)
Q Consensus 328 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~a~Vv~~T~~~a~~ 401 (690)
+...-. .....++++.+..... +......+...++.+.+.++..+.....+.+..++||++|+++++.
T Consensus 282 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~ 355 (646)
T 4b3f_X 282 LARSDS------AQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASA 355 (646)
T ss_dssp HTTTTC------SSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCS
T ss_pred HhhchH------HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhh
Confidence 653210 0000111111111100 0011112344556666777777777888899999999999998876
Q ss_pred HH---HhcCCCcccc-------------------cceeeecCCCCCCCccccchhhhhcCCCccHHHHHHHhCCCccccc
Q 038763 402 PL---IRRLDTFDLV-------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459 (690)
Q Consensus 402 ~~---l~~~~~fD~v-------------------~~~~VLvGD~~QLpP~v~s~~a~~~gl~~SLfeRl~~~~~~~~~~~ 459 (690)
.. ......||+| ++++||||||+||||++.+..+...|++.|+|+|+.+.+++.+..+
T Consensus 356 ~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~ 435 (646)
T 4b3f_X 356 DGPLKLLPESYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRT 435 (646)
T ss_dssp SSGGGGSCTTCCSEEEETTGGGSCHHHHTTTGGGSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEE
T ss_pred hhHHHhhhhccCCEEEEcCccccchHHHHhhccccceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeee
Confidence 32 1122478987 7899999999999999999999999999999999998887777789
Q ss_pred cccccCCchhHHHhhhhccCCCcccCCcccccccccCCCCCCCCCCCCCCeEEEeCCCCCCCCCCCcccccccCCCCCcc
Q 038763 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFY 539 (690)
Q Consensus 460 L~~qYRm~~~I~~f~s~~fY~g~L~~~~~v~~~~l~~~~~~~~~~~~~~p~~~~dt~~~~~~~~~~~~e~~~~~~~~S~~ 539 (690)
|++||||||.|++|+|+.||+|+|.+++++..+.+.+.|..........|++|+|+.+... .+ .....+.|+.
T Consensus 436 L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~------~~-~~~~~~~s~~ 508 (646)
T 4b3f_X 436 LTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGL------FE-LEEEDEQSKG 508 (646)
T ss_dssp CCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSC------CC-CC-----CCC
T ss_pred cccccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecCCCcc------cc-ccccCCcccc
Confidence 9999999999999999999999999999998888888887776666778999999985311 11 1223356899
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCcEEEEcCcHHHHHHHHHHhhcCCCCCCeEEecccCccCccccEEEEEeeecCCCCcc
Q 038763 540 NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAV 619 (690)
Q Consensus 540 N~~Ea~~v~~~v~~L~~~g~~~~~IgIItpY~~Qv~~l~~~L~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrsn~~~~~ 619 (690)
|+.||++|+.+++.|++.|+++++|||||||++|+.+|++.|... ..+|+|+|||+|||+|+||||+|+||||..+.+
T Consensus 509 N~~EA~~V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~l~~~--~~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~i 586 (646)
T 4b3f_X 509 NPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHR--HPELEIKSVDGFQGREKEAVILSFVRSNRKGEV 586 (646)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTT--CTTCEEEEGGGGTTCCEEEEEEECCCCCTTCCC
T ss_pred CHHHHHHHHHHHHHHHhcCCCcCcEEEECCCHHHHHHHHHHHHHh--CCCCEECChhhcccccCCEEEEEeccCCCCCCc
Confidence 999999999999999999999999999999999999999999763 357999999999999999999999999999999
Q ss_pred cccCCCCceeeeeccccccEEEEecCcccccChHHHHHHHHHHHcCcEEec
Q 038763 620 GFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 670 (690)
Q Consensus 620 gfl~d~rRlNVAlTRAk~~LiivG~~~tl~~~~~~~~l~~~~~~~~~~~~~ 670 (690)
|||.|+||||||+||||++||||||..+|+++++|++|++|++++|+++.+
T Consensus 587 GFl~~~rRlNVAlTRAk~~liivGn~~~l~~~~~~~~li~~~~~~g~~~~~ 637 (646)
T 4b3f_X 587 GFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 637 (646)
T ss_dssp CSTTCHHHHHHHHHTEEEEEEEEECHHHHTTSHHHHHHHHHHHHSSEEEEG
T ss_pred cccCCcCcEEeEhhhhhCeEEEEEchHHhcCCHHHHHHHHHHHHCCCEeeH
Confidence 999999999999999999999999999999999999999999999999875
No 2
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=7.8e-78 Score=692.56 Aligned_cols=587 Identities=27% Similarity=0.397 Sum_probs=424.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcchHHHhhcCCCcccccccccceeEeeeeeecC
Q 038763 6 VKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVSTSTGLG 85 (690)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~g~~ 85 (690)
|+.+|.++.+|++.|..||.+|+++|++..+.. +.-++.+ ...+|++
T Consensus 2 ~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~--------------------------------~~~~~~~-~~~~~~~ 48 (624)
T 2gk6_A 2 LGSRYEDAYQYQNIFGPLVKLEADYDKKLKESQ--------------------------------TQDNITV-RWDLGLN 48 (624)
T ss_dssp -CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHT--------------------------------CEEEECE-EEEECTT
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHHHHHHHhhh--------------------------------hccCceE-EeeecCC
Confidence 788999999999999999999999987664331 1224444 4457899
Q ss_pred CeEEEEEEecCCCCCCCCCCCCCCEEEEEecCCCCCCCCcceeEEEEEEcCC-ceEEEEEEecCCCCCccccccCceeEE
Q 038763 86 GMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGED-GCTISVALESRHGDPTFSKLFGKSVRI 164 (690)
Q Consensus 86 g~~~~~~~~~~~~~~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~g~V~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~ 164 (690)
|+.+..|..++ ..++++|..||.|+++..+.... .....|+|+++... +..|+|.++.....|.+ ....++
T Consensus 49 ~~~~~~~~~~~--~~~~~~~~~Gd~v~l~~~~~~~~--~~~~~g~v~~~~~~~~~~v~v~~~~~~~~~~~---~~~~~~- 120 (624)
T 2gk6_A 49 KKRIAYFTLPK--TDSDMRLMQGDEICLRYKGDLAP--LWKGIGHVIKVPDNYGDEIAIELRSSVGAPVE---VTHNFQ- 120 (624)
T ss_dssp SCEEEEEECC---------CCTTCEEEEEECSSSSC--CCEEEEEEEECSCSSCSEEEEEESCCTTCCCS---CCSSEE-
T ss_pred CceEEEEEecc--cccCCcCCCCCEEEEEECCCCCC--CcEEEEEEEEecCCCCCEEEEEEccCCCCccc---cccceE-
Confidence 99999998765 55667899999999986543321 23468999999652 34788888643223322 122344
Q ss_pred eEEeeccchhhHHHHHHHHHHHHhccccCCCCchhHHHhhhCCCccchhhhccccccchhhhhcCCCCCCCCHHHHHHHH
Q 038763 165 DRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKAIA 244 (690)
Q Consensus 165 ~~~~~~~~~~t~~r~~~al~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~~Q~~Av~ 244 (690)
++.++|.+||+||..||..+...... ....+...++|...+........+..| ....+..||++|++||.
T Consensus 121 --~~~~~~~~~~~r~~~al~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~-----~~~~~~~ln~~Q~~av~ 190 (624)
T 2gk6_A 121 --VDFVWKSTSFDRMQSALKTFAVDETS---VSGYIYHKLLGHEVEDVIIKCQLPKRF-----TAQGLPDLNHSQVYAVK 190 (624)
T ss_dssp --EEECCCCHHHHHHHHHHHHHHHCTTS---BCSHHHHHHTTCCCCCCCCCCCCCSCC-----SCTTSCCCCHHHHHHHH
T ss_pred --EEEEeCCchHHHHHHHHHHHHhcccc---chHHHHHHhcCCCCccccccccCcccc-----cccccCCCCHHHHHHHH
Confidence 44578999999999999998754321 122345667776443221111111112 12234579999999999
Q ss_pred HHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH-cCCeEEEEcCChHHHHHHHHHHHhcCCceeecCCCcc--cCchhcc
Q 038763 245 LGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR--ISPAVAS 321 (690)
Q Consensus 245 ~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~-~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRiG~~~r--~~~~~~~ 321 (690)
.++. .++++|+||||||||+|+++++.++++ .+.+||+|||||.|||+|.+++.+.+++++|+|++.+ +...+..
T Consensus 191 ~~l~--~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~~r~~~~~~~~~ 268 (624)
T 2gk6_A 191 TVLQ--RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSF 268 (624)
T ss_dssp HHHT--CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCTGGGSCCCTTTT
T ss_pred HHhc--CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeeccccchhhccchhh
Confidence 9986 369999999999999999999999987 7889999999999999999999999999999999876 3333444
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEcccccch
Q 038763 322 KSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD 401 (690)
Q Consensus 322 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~a~Vv~~T~~~a~~ 401 (690)
.+++..+..... ..++.+. ..+....... . ... .+.++.........+++.++||++||.++++
T Consensus 269 ~tl~~~~~~~~~--~~~l~~l-~~~~~~~~~~-~-----~~~-------~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~ 332 (624)
T 2gk6_A 269 LALHNQIRNMDS--MPELQKL-QQLKDETGEL-S-----SAD-------EKRYRALKRTAERELLMNADVICCTCVGAGD 332 (624)
T ss_dssp TBHHHHHTSCSS--CHHHHHH-HTTCC----C-C-----HHH-------HHHHHHHHHHHHHHHHHTCSEEEEETGGGGC
T ss_pred hhHHHHHHhccc--hHHHHHH-HHHHHhhccc-C-----HHH-------HHHHHHHHHHHHHHHHhcCCEEEEcChhhcc
Confidence 556554321000 0000000 0000000000 0 000 0112222233456788999999999999887
Q ss_pred HHHhcCCCcccc--------------------cceeeecCCCCCCCccccchhhhhcCCCccHHHHHHHhCCCccccccc
Q 038763 402 PLIRRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLT 461 (690)
Q Consensus 402 ~~l~~~~~fD~v--------------------~~~~VLvGD~~QLpP~v~s~~a~~~gl~~SLfeRl~~~~~~~~~~~L~ 461 (690)
..+.. ..||++ ++++|+||||+||||++.+..+...|++.|+|+|+... +...++|+
T Consensus 333 ~~l~~-~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~--~~~~~~L~ 409 (624)
T 2gk6_A 333 PRLAK-MQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQ 409 (624)
T ss_dssp GGGTT-CCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHT--TCCCEECC
T ss_pred hhhhc-CCCCEEEEecccccCcHHHHHHHHhcCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhc--CCCcEEeh
Confidence 66654 378877 57999999999999999998888889999999999764 44557999
Q ss_pred cccCCchhHHHhhhhccCCCcccCCcccccccccCCCCCCCCC-CCCCCeEEEeCCCCCCCCCCCcccccccCCCCCccC
Q 038763 462 TQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW-ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540 (690)
Q Consensus 462 ~qYRm~~~I~~f~s~~fY~g~L~~~~~v~~~~l~~~~~~~~~~-~~~~p~~~~dt~~~~~~~~~~~~e~~~~~~~~S~~N 540 (690)
+||||||+|++|+|..||+|+|.++..+..+...... ..| ....|++|+++.+ .++. ...+.|+.|
T Consensus 410 ~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~---~~~~~~~~p~~~~~~~g--------~~~~--~~~~~s~~N 476 (624)
T 2gk6_A 410 VQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD---FQWPQPDKPMFFYVTQG--------QEEI--ASSGTSYLN 476 (624)
T ss_dssp EECSSCHHHHHHHHHHHSTTCCEESSCTGGGCCTTCC---CCCSSTTCCEEEEECCC--------CEEC--CTTSSCCEE
T ss_pred hhhCcChhHHhhhHHhhcCcccccCCchhhhcccccC---CCCCCCCCCEEEEEcCC--------ccee--cCCCCCccC
Confidence 9999999999999999999999987766554332211 122 2357999998763 1211 123468999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCcEEEEcCcHHHHHHHHHHhhcCCC-----CCCeEEecccCccCccccEEEEEeeecCC
Q 038763 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPE-----AAGVEVATIDSFQGREADAVIISMVRSNT 615 (690)
Q Consensus 541 ~~Ea~~v~~~v~~L~~~g~~~~~IgIItpY~~Qv~~l~~~L~~~~~-----~~~v~V~TVd~fQG~E~dvVIlS~vrsn~ 615 (690)
+.||+.|.+++..|++.|+++++|||||||++|+..|++.|..... ..+|+|+|||+|||+|+|+||+|+||++.
T Consensus 477 ~~Ea~~v~~~v~~l~~~g~~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~ 556 (624)
T 2gk6_A 477 RTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANE 556 (624)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHcCCCCCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCC
Confidence 9999999999999999999999999999999999999999875332 13699999999999999999999999998
Q ss_pred CCcccccCCCCceeeeeccccccEEEEecCcccccChHHHHHHHHHHHcCcEEecCCCCCcC
Q 038763 616 LGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGG 677 (690)
Q Consensus 616 ~~~~gfl~d~rRlNVAlTRAk~~LiivG~~~tl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 677 (690)
.+.+||+.|.||||||+||||++|+||||..+|+++++|++|++|++++|++...+..++-.
T Consensus 557 ~~~~gfl~~~~rlnVAlTRAk~~L~ivg~~~~l~~~~~~~~li~~~~~~~~~~~~~~~~l~~ 618 (624)
T 2gk6_A 557 HQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRE 618 (624)
T ss_dssp ---CCTTTCHHHHHHHTTSEEEEEEEEECHHHHTTSHHHHHHHHHHHHTTCCCCSCGGGCCC
T ss_pred CCCccccCCcceeeeehhhhhCcEEEEECHHHHccChHHHHHHHHHHHCCCEEeCCHHHHhh
Confidence 88899999999999999999999999999999999999999999999999997665555443
No 3
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=1.2e-75 Score=685.26 Aligned_cols=591 Identities=28% Similarity=0.406 Sum_probs=435.2
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcchHHHhhcCCCcccccccccceeEeeeeee
Q 038763 4 ERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVSTSTG 83 (690)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~g 83 (690)
..|+..|.++.+|.+.|..|+.+|+++|+...+. . .+.++.+ ...+|
T Consensus 176 ~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~----~----------------------------~~~~~~~-~~~~~ 222 (800)
T 2wjy_A 176 QHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKES----Q----------------------------TQDNITV-RWDLG 222 (800)
T ss_dssp CCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHH----T----------------------------CEEEECC-EEEEC
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHhhhhhhhh----h----------------------------hccceEE-EEEec
Confidence 4678899999999999999999999988764332 0 1223443 34578
Q ss_pred cCCeEEEEEEecCCCCCCCCCCCCCCEEEEEecCCCCCCCCcceeEEEEEEcCC-ceEEEEEEecCCCCCccccccCcee
Q 038763 84 LGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGED-GCTISVALESRHGDPTFSKLFGKSV 162 (690)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~g~V~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~ 162 (690)
++|+.+..|..++ ..+.+.|.+||.|.++..+... ......|+|+++... ...|.+.+......|.. .+..+
T Consensus 223 ~~~~~~~~~~~~~--~~~~~~l~~GD~v~l~~~~~~~--~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~---~~~~~ 295 (800)
T 2wjy_A 223 LNKKRIAYFTLPK--TDSDMRLMQGDEICLRYKGDLA--PLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVE---VTHNF 295 (800)
T ss_dssp TTCCEEEEECCCB--CCC--CCCTTCEEEEEECSSSS--CCEEEEEEEEECSBTTBSCEEEEESCCTTCCTT---CCSCE
T ss_pred CCCeeEEEEEecc--ccCCCCCCCCCEEEEEECCCCC--CCceeEEEEEEEcCCCCCEEEEEEccCCCCccc---cCCCc
Confidence 9999999998765 4456789999999998654432 123468999999651 23577777533222321 12334
Q ss_pred EEeEEeeccchhhHHHHHHHHHHHHhccccCCCCchhHHHhhhCCCccchhhhccccccchhhhhcCCCCCCCCHHHHHH
Q 038763 163 RIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKA 242 (690)
Q Consensus 163 ~~~~~~~~~~~~t~~r~~~al~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~~Q~~A 242 (690)
+ ++.++|.+||+||..||..+..... .....+...+++...+...+... ++. .+.......||++|++|
T Consensus 296 ~---v~~~~~~~~~~r~~~aL~~~~~~e~---~~~~~l~~~ll~~~~~~~~~~~~-l~~----~~~~~~~~~Ln~~Q~~A 364 (800)
T 2wjy_A 296 Q---VDFVWKSTSFDRMQSALKTFAVDET---SVSGYIYHKLLGHEVEDVIIKCQ-LPK----RFTAQGLPDLNHSQVYA 364 (800)
T ss_dssp E---EEECCCCHHHHHHHHHHHHHHHCTT---SBCHHHHHHHTTCCCCCCCCCCC-CCS----CCSCTTSCCCCHHHHHH
T ss_pred e---EEEeecCChHHHHHHHHHHHHHhhc---chhHHHHHHhcCCCCCchhhccc-Ccc----ccccccccCCCHHHHHH
Confidence 4 4456899999999999998865421 12223455566654322111111 110 11122345799999999
Q ss_pred HHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH-cCCeEEEEcCChHHHHHHHHHHHhcCCceeecCCCcc--cCchh
Q 038763 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR--ISPAV 319 (690)
Q Consensus 243 v~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~-~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRiG~~~r--~~~~~ 319 (690)
|..++.. ++++|+||||||||+|+++++.++++ .+.+||+|||||.|||+|.+++.+.+++++|+|++.+ +...+
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~~~r~~i~~~~ 442 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV 442 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCCGGGGGCCCTT
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecccchhhhcchh
Confidence 9999863 69999999999999999999999997 6889999999999999999999999999999999876 33444
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEccccc
Q 038763 320 ASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399 (690)
Q Consensus 320 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~a~Vv~~T~~~a 399 (690)
...+++..+...-. ..++. .+.+ +.. ....+.... .+.++.........+++.++||++|+.++
T Consensus 443 ~~~tlh~~~~~~~~--~~~l~----~l~~-~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 443 SFLALHNQIRNMDS--MPELQ----KLQQ-LKD--ETGELSSAD-------EKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp GGGBHHHHHHTCTT--CHHHH----HHHH-HHT--TTSCCCHHH-------HHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred hhhhHHHHHHcCcc--HHHHH----HHHH-HHH--hhcccChHH-------HHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 55566655432100 00000 0000 000 000000000 01122222334567889999999999998
Q ss_pred chHHHhcCCCcccc--------------------cceeeecCCCCCCCccccchhhhhcCCCccHHHHHHHhCCCccccc
Q 038763 400 ADPLIRRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459 (690)
Q Consensus 400 ~~~~l~~~~~fD~v--------------------~~~~VLvGD~~QLpP~v~s~~a~~~gl~~SLfeRl~~~~~~~~~~~ 459 (690)
+...+.. ..||++ ++++||||||+||||++.+..+...|++.|+|+|+... +...++
T Consensus 507 ~~~~l~~-~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~--g~~~~~ 583 (800)
T 2wjy_A 507 GDPRLAK-MQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIR 583 (800)
T ss_dssp GCTTTTT-CCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHT--TCCCEE
T ss_pred CChhhhc-CCCCEEEEECCCCCCcHHHHHHHHhcCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhC--CCCceE
Confidence 8765554 368776 57999999999999999998888889999999999764 445589
Q ss_pred cccccCCchhHHHhhhhccCCCcccCCcccccccccCCCCCCCCC-CCCCCeEEEeCCCCCCCCCCCcccccccCCCCCc
Q 038763 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW-ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF 538 (690)
Q Consensus 460 L~~qYRm~~~I~~f~s~~fY~g~L~~~~~v~~~~l~~~~~~~~~~-~~~~p~~~~dt~~~~~~~~~~~~e~~~~~~~~S~ 538 (690)
|++||||||+|++|+|..||+|+|.++..+..+...... ..| ....|++|+++.+. ++. ...+.|+
T Consensus 584 L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~---~~~~~~~~p~~f~~~~g~--------e~~--~~~~~S~ 650 (800)
T 2wjy_A 584 LQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD---FQWPQPDKPMFFYVTQGQ--------EEI--ASSGTSY 650 (800)
T ss_dssp CCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCC---CCCSSTTSCEEEEECCCC--------CEE--CSSBSCE
T ss_pred ehhhcCCCcHHHHhhHHHhcCCccccCCchhhhcccccc---ccccCCCCCEEEEEcCCc--------eee--cCCCCcc
Confidence 999999999999999999999999987766554332211 112 24579999998641 211 1234689
Q ss_pred cCHHHHHHHHHHHHHHHHCCCCCCcEEEEcCcHHHHHHHHHHhhcCCC-----CCCeEEecccCccCccccEEEEEeeec
Q 038763 539 YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPE-----AAGVEVATIDSFQGREADAVIISMVRS 613 (690)
Q Consensus 539 ~N~~Ea~~v~~~v~~L~~~g~~~~~IgIItpY~~Qv~~l~~~L~~~~~-----~~~v~V~TVd~fQG~E~dvVIlS~vrs 613 (690)
.|..||+.|++++..|++.|+++++|||||||++|+.+|++.|..... ..+|+|+|||+|||+|+|+||+|+||+
T Consensus 651 ~N~~Ea~~V~~~v~~L~~~g~~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs 730 (800)
T 2wjy_A 651 LNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRA 730 (800)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCC
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCC
Confidence 999999999999999999999999999999999999999998865321 236999999999999999999999999
Q ss_pred CCCCcccccCCCCceeeeeccccccEEEEecCcccccChHHHHHHHHHHHcCcEEecCCCCCcCCC
Q 038763 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSG 679 (690)
Q Consensus 614 n~~~~~gfl~d~rRlNVAlTRAk~~LiivG~~~tl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 679 (690)
+..+.+||+.|.||||||+||||++|+||||..+|+.+++|++|++|++++|++...+..++-...
T Consensus 731 ~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~~~~ 796 (800)
T 2wjy_A 731 NEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESL 796 (800)
T ss_dssp SCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTSSHHHHHHHHHHHHTTCEEESCGGGCEECC
T ss_pred CCccccccccCcchhhhhHHhhhccEEEEECHHHhccCHHHHHHHHHHHHCCCEEeCCHHHhhhhc
Confidence 988889999999999999999999999999999999999999999999999999888766665443
No 4
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-76 Score=691.70 Aligned_cols=592 Identities=28% Similarity=0.389 Sum_probs=431.3
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcchHHHhhcCCCcccccccccceeEeeeeee
Q 038763 4 ERVKTIQSRLDEFTQRMSELLRIERDAELEFTQEELNAVPTPDENSDSSKPIEFLVSHGRAPQELCDTICNLFVVSTSTG 83 (690)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~g 83 (690)
..|+..|.+..+|.+.|..|+++|+++|+...+. . ++-++.+ ...+|
T Consensus 178 ~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~----~----------------------------~~~~~~~-~~~~~ 224 (802)
T 2xzl_A 178 PPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKES----Q----------------------------ALEHISV-SWSLA 224 (802)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCC----C------------------------------CCBCE-EEEEC
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHhhhhhhhH----h----------------------------hccCceE-eeecc
Confidence 5688899999999999999999999987653210 0 1223333 33568
Q ss_pred cCCeEEEEEEecCCCCCCCCCCCCCCEEEEEecCCCCCCCCcceeEEEEEEcCC-ceEEEEEEecCCCCCccccccCcee
Q 038763 84 LGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRVCDSRGACATSCIQGFVHNLGED-GCTISVALESRHGDPTFSKLFGKSV 162 (690)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~~~~~~~Gd~V~i~~~~~~~~~~~~~~~g~V~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~ 162 (690)
++|++++.|..++. ..+++.|.+||.|.++..+..+. .....|+|+++... ...|+|.+......+.. .....+
T Consensus 225 ~~~~~~~~~~~~~~-~~~~~~~~~GD~v~l~~~~~~~~--~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~--~~~~~~ 299 (802)
T 2xzl_A 225 LNNRHLASFTLSTF-ESNELKVAIGDEMILWYSGMQHP--DWEGRGYIVRLPNSFQDTFTLELKPSKTPPPT--HLTTGF 299 (802)
T ss_dssp TTSCEEEEEC----------CCCTTCEEEEEECSSSSS--CEEEEEEEEECCC---CCEEEEECCCSSCCCT--TCCSSE
T ss_pred CCCeEEEEEEeccc-ccCCCCCCCCCEEEEEECCCCCC--ceeEEEEEEEECCCCCCEEEEEEeCCCCCCcc--ccCCCe
Confidence 89999999987542 33457899999999986544322 23468999999752 24578888532222211 112224
Q ss_pred EEeEEeeccchhhHHHHHHHHHHHHhccccCCCCchhHHHhhhCCCccchhhhccccccchhhhhcCCCCCCCCHHHHHH
Q 038763 163 RIDRIQGLADTLTYERNCEALMLLQKNGLHKRNPSIAAVVTLFGDKEDVTWLEENDLADWSEVKLDGIMGKTFDDSQKKA 242 (690)
Q Consensus 163 ~~~~~~~~~~~~t~~r~~~al~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~~Q~~A 242 (690)
+ ++.++|.+||+||..||..+..... .....+...++|...+........+..| ....+..||++|++|
T Consensus 300 ~---v~~~~~~~~~~r~~~AL~~~~~~~~---~~~~~l~~~ll~~~~~~~~~~~~lp~~~-----~~~~~~~Ln~~Q~~A 368 (802)
T 2xzl_A 300 T---AEFIWKGTSYDRMQDALKKFAIDKK---SISGYLYYKILGHQVVDISFDVPLPKEF-----SIPNFAQLNSSQSNA 368 (802)
T ss_dssp E---EEECCCCHHHHHHHHHHHHHHHCTT---SBCHHHHHHHHTCCCCCCCCCCCCCSCC-----SCTTSCCCCHHHHHH
T ss_pred E---EEEEecCchHHHHHHHHHHHHhccc---cchhHHHHHhcCCccccccccccCcccc-----cccccccCCHHHHHH
Confidence 3 4457899999999999999865421 1222355667776543221111101111 122345799999999
Q ss_pred HHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH-cCCeEEEEcCChHHHHHHHHHHHhcCCceeecCCCcc--cCchh
Q 038763 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPAR--ISPAV 319 (690)
Q Consensus 243 v~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~-~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRiG~~~r--~~~~~ 319 (690)
|..++. .++++|+||||||||+|++++|.++++ .+.+||+|||||.|||+|.+||.+.+++++|+|++.+ +...+
T Consensus 369 v~~~l~--~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~~r~~i~~~~ 446 (802)
T 2xzl_A 369 VSHVLQ--RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSV 446 (802)
T ss_dssp HHHHTT--CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCGGGTTSCCTT
T ss_pred HHHHhc--CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecccchhhhcchh
Confidence 999986 468999999999999999999999987 7899999999999999999999999999999999876 44555
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEccccc
Q 038763 320 ASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGA 399 (690)
Q Consensus 320 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~a~Vv~~T~~~a 399 (690)
...+++.++..........+.+ ...... .+.. .. . +.+..........+++.++||++|+.++
T Consensus 447 ~~~tl~~~~~~~~~~~l~~l~~----~~~~~~-~ls~-~~-------~----~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 509 (802)
T 2xzl_A 447 SNLALHNLVGRGAKGELKNLLK----LKDEVG-ELSA-SD-------T----KRFVKLVRKTEAEILNKADVVCCTCVGA 509 (802)
T ss_dssp GGGBHHHHHHTTCCTHHHHHHH----HHHHHS-CCCH-HH-------H----HHHHHHHHHHHHHHHHTCSEEEEETTGG
T ss_pred hhhhHHHHHHhhcHHHHHHHHH----HHHhhc-cCCH-HH-------H----HHHHHHHHHHHHHHhccCCEEEechhhc
Confidence 6667766554211000000000 000000 0000 00 0 1111112234466788999999999988
Q ss_pred chHHHhcCCCcccc--------------------cceeeecCCCCCCCccccchhhhhcCCCccHHHHHHHhCCCccccc
Q 038763 400 ADPLIRRLDTFDLV--------------------GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATK 459 (690)
Q Consensus 400 ~~~~l~~~~~fD~v--------------------~~~~VLvGD~~QLpP~v~s~~a~~~gl~~SLfeRl~~~~~~~~~~~ 459 (690)
+...+.. .||+| ++++|+||||+||||++.+..+...|++.|+|+|+... +...++
T Consensus 510 ~~~~L~~--~fd~viIDEA~q~~e~~~li~l~~~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~--~~~~~~ 585 (802)
T 2xzl_A 510 GDKRLDT--KFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISL--GHVPIR 585 (802)
T ss_dssp GCTTCCS--CCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHT--TCCCEE
T ss_pred ChHHHhc--cCCEEEEECccccchHHHHHHHHhCCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhc--CCCceE
Confidence 7655543 77777 57999999999999999998888889999999999764 445679
Q ss_pred cccccCCchhHHHhhhhccCCCcccCCcccccccccCCCCCCCCC-CCCCCeEEEeCCCCCCCCCCCcccccccCCCCCc
Q 038763 460 LTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTW-ITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSF 538 (690)
Q Consensus 460 L~~qYRm~~~I~~f~s~~fY~g~L~~~~~v~~~~l~~~~~~~~~~-~~~~p~~~~dt~~~~~~~~~~~~e~~~~~~~~S~ 538 (690)
|++||||||+|++|+|..||+|+|.++..+..+.+.+... .| ....|++|+++.+ .++. ...+.|+
T Consensus 586 L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~---~~~~~~~p~~f~~~~g--------~~~~--~~~~~s~ 652 (802)
T 2xzl_A 586 LEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKF---PWPIRGIPMMFWANYG--------REEI--SANGTSF 652 (802)
T ss_dssp CCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCC---CCSSTTCCEEEEECCC--------CCEE--CTTSSSE
T ss_pred eeeecCCChHHHHHHHHHhcCCccccCCchhhhccccccC---CCCCCCCCEEEEEcCC--------ceee--cCCCCCc
Confidence 9999999999999999999999999877665544332111 12 2457899998763 1221 1234689
Q ss_pred cCHHHHHHHHHHHHHHHHCCCCCCcEEEEcCcHHHHHHHHHHhhcCCC-----CCCeEEecccCccCccccEEEEEeeec
Q 038763 539 YNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLPE-----AAGVEVATIDSFQGREADAVIISMVRS 613 (690)
Q Consensus 539 ~N~~Ea~~v~~~v~~L~~~g~~~~~IgIItpY~~Qv~~l~~~L~~~~~-----~~~v~V~TVd~fQG~E~dvVIlS~vrs 613 (690)
.|..||+.|+++++.|++.|+++++|||||||++|+.+|++.|..... ..+|+|+|||+|||+|+|+||+|+||+
T Consensus 653 ~N~~EA~~V~~~v~~L~~~g~~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs 732 (802)
T 2xzl_A 653 LNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRA 732 (802)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccC
Confidence 999999999999999999999999999999999999999999865321 236999999999999999999999999
Q ss_pred CCCCcccccCCCCceeeeeccccccEEEEecCcccccChHHHHHHHHHHHcCcEEecCCCCCcCCCC
Q 038763 614 NTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGL 680 (690)
Q Consensus 614 n~~~~~gfl~d~rRlNVAlTRAk~~LiivG~~~tl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 680 (690)
|..+.+||+.|.||||||+||||++|+||||..+|+++++|++|++|++++|++...+..++-....
T Consensus 733 ~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~~~~~ 799 (802)
T 2xzl_A 733 NEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCTV 799 (802)
T ss_dssp CTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTTSHHHHHHHHHHHHHTCEEEEETTEEEECCC
T ss_pred CCCCCcccccCccceeeeHhhhhCeEEEEECHHHhccChHHHHHHHHHHHcCCeecCCHHHHhhhcc
Confidence 9888899999999999999999999999999999999999999999999999998877666655443
No 5
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.96 E-value=4.1e-28 Score=281.36 Aligned_cols=288 Identities=17% Similarity=0.184 Sum_probs=164.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcC----CeEEEEcCChHHHHHHHHHHHhc-CCcee
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG----ERVLVTAPTNAAVDNMVEKLSDV-GLNIV 307 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g----~rVLv~a~SN~AvD~l~erL~~~-~~~~v 307 (690)
..||++|++||.. . .+..+|.||||||||+|+++.|.+++..+ .+||++|+||.|++++.+||.+. +...
T Consensus 8 ~~Ln~~Q~~av~~---~-~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~- 82 (647)
T 3lfu_A 8 DSLNDKQREAVAA---P-RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQ- 82 (647)
T ss_dssp TTCCHHHHHHHTC---C-SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCC-
T ss_pred hcCCHHHHHHHhC---C-CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcccc-
Confidence 4699999999983 2 34579999999999999999999999863 69999999999999999999763 1100
Q ss_pred ecCCCcccCchhccccHHHHHHHHHHH-------------------------HHHHHHH-----HHHHHHHHHHHH----
Q 038763 308 RVGNPARISPAVASKSLGEIVKSKLAS-------------------------FVAEFER-----KKSDLRKDLRQC---- 353 (690)
Q Consensus 308 RiG~~~r~~~~~~~~~l~~~~~~~l~~-------------------------~~~~~~~-----~~~~~~~~l~~~---- 353 (690)
..+.-.+++.+....+.. ...++.. ....+...+..+
T Consensus 83 ---------~~~~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~ 153 (647)
T 3lfu_A 83 ---------GGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEG 153 (647)
T ss_dssp ---------TTCEEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTT
T ss_pred ---------CCcEEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHcC
Confidence 011112222222111110 0000000 000000001000
Q ss_pred hcc-------hhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhhcCcEEEEcccccchH----HH
Q 038763 354 LKD-------DSLAAGIRQLLKQLGKTLKKK------------------EKETVKEVLSSAQVVLATNTGAADP----LI 404 (690)
Q Consensus 354 ~~~-------~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~~il~~a~Vv~~T~~~a~~~----~l 404 (690)
+.. ......+...+..+.+.++.. .......+-...+.|+..-....++ ++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~QD~~~~q~~ll 233 (647)
T 3lfu_A 154 LRPHHIQSYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWI 233 (647)
T ss_dssp CCCCCC----CCHHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSGGGCCHHHHHHH
T ss_pred CCHHHHHhccchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCHHHHHHHHhhCCEEEEECcccCCHHHHHHH
Confidence 000 001111111121111111110 0011111112244444432221111 11
Q ss_pred hcCCCcccccceeeecCCCCCCCccccchhhhhcCCCccHHHHHHHhCCCccccccccccCCchhHHHhhhhccCCCccc
Q 038763 405 RRLDTFDLVGKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLI 484 (690)
Q Consensus 405 ~~~~~fD~v~~~~VLvGD~~QLpP~v~s~~a~~~gl~~SLfeRl~~~~~~~~~~~L~~qYRm~~~I~~f~s~~fY~g~L~ 484 (690)
... +. -+.++++|||++| .| +...|.+...|.++...+++...+.|.+||||++.|++++|..|+++...
T Consensus 234 ~~l--~~-~~~~l~~vGD~~Q---sI----y~frga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~ 303 (647)
T 3lfu_A 234 RLL--AG-DTGKVMIVGDDDQ---SI----YGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGR 303 (647)
T ss_dssp HHH--HT-TTCEEEEEECGGG---CC----CGGGTCCTTHHHHHHHHCTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSC
T ss_pred HHH--hc-CCCEEEEEcCchh---hh----ccccCCCHHHHHHHHHhCCCCeEEEcccCCCCCHHHHHHHHHHHHhcccc
Confidence 100 00 0478999999999 22 23457788899998888887777899999999999999999999876432
Q ss_pred CCcccccccccCCCCCCCCCCCCCCeEEEeCCCCCCCCCCCcccccccCCCCCccCHHHHHHHHHHHHHHHHCCCCCCcE
Q 038763 485 SSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAI 564 (690)
Q Consensus 485 ~~~~v~~~~l~~~~~~~~~~~~~~p~~~~dt~~~~~~~~~~~~e~~~~~~~~S~~N~~Ea~~v~~~v~~L~~~g~~~~~I 564 (690)
...... .....+.++.++.. .....|++.|+..+..++..|++++||
T Consensus 304 ~~~~~~-----------~~~~~~~~~~~~~~----------------------~~~~~e~~~ia~~I~~l~~~g~~~~di 350 (647)
T 3lfu_A 304 LGKKLW-----------TDGADGEPISLYCA----------------------FNELDEARFVVNRIKTWQDNGGALAEC 350 (647)
T ss_dssp CCCCCB-----------CSSCCCCCEEEEEE----------------------EEHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred cCCccc-----------cCCCCCCceEEEec----------------------CChHHHHHHHHHHHHHHHHcCCCccCE
Confidence 211100 00011223444321 124579999999999999999999999
Q ss_pred EEEcCcHHHHHHH
Q 038763 565 AVQSPYVAQVQHL 577 (690)
Q Consensus 565 gIItpY~~Qv~~l 577 (690)
+||+|++.|...+
T Consensus 351 aVL~r~~~~~~~l 363 (647)
T 3lfu_A 351 AILYRSNAQSRVL 363 (647)
T ss_dssp EEEESSGGGHHHH
T ss_pred EEEEeCchhHHHH
Confidence 9999998776443
No 6
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.93 E-value=6.4e-26 Score=265.19 Aligned_cols=124 Identities=15% Similarity=0.063 Sum_probs=89.0
Q ss_pred ceeeecCCCCCCCccccchhhhhcCCCccHHHHHHHhCCCccccccccccCCchhHHHhhhhccCCCcccCCcccccccc
Q 038763 415 KRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLL 494 (690)
Q Consensus 415 ~~~VLvGD~~QLpP~v~s~~a~~~gl~~SLfeRl~~~~~~~~~~~L~~qYRm~~~I~~f~s~~fY~g~L~~~~~v~~~~l 494 (690)
.++++|||++|- | +...|.+...|.++.+.+++...+.|..|||+++.|.+++|..+.++.-......
T Consensus 244 ~~l~vVGD~~Qs---I----Y~fRGA~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~k~l----- 311 (724)
T 1pjr_A 244 QNICAVGDADQS---I----YRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRI----- 311 (724)
T ss_dssp CCEEEEECGGGC---C----CGGGTCCTHHHHTHHHHSTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCCC-----
T ss_pred CeEEEEECchhh---c----ccccCCCHHHHHHHHHHCCCCcEEECCCCCCCCHHHHHHHHHHHHhCccccCccc-----
Confidence 589999999992 3 3355778888888887788777789999999999999999999976542211100
Q ss_pred cCCCCCCCCCCCCCCeEEEeCCCCCCCCCCCcccccccCCCCCccCHHHHHHHHHHHHHHHH-CCCCCCcEEEEcCcHHH
Q 038763 495 VDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-AGVSPSAIAVQSPYVAQ 573 (690)
Q Consensus 495 ~~~~~~~~~~~~~~p~~~~dt~~~~~~~~~~~~e~~~~~~~~S~~N~~Ea~~v~~~v~~L~~-~g~~~~~IgIItpY~~Q 573 (690)
......+.++.++.. .....|++.|+..|..++. .|++++|||||++.++|
T Consensus 312 ------~~~~~~g~~i~~~~~----------------------~~~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~ 363 (724)
T 1pjr_A 312 ------WTENPEGKPILYYEA----------------------MNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQ 363 (724)
T ss_dssp ------BCSSCCCCCEEEEEE----------------------EEHHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGG
T ss_pred ------ccccCCCCceEEEec----------------------CCHHHHHHHHHHHHHHHHHhcCCChhheeeeeecchh
Confidence 000011223433321 1135799999999999987 78999999999999988
Q ss_pred HHHHH
Q 038763 574 VQHLR 578 (690)
Q Consensus 574 v~~l~ 578 (690)
...+.
T Consensus 364 ~~~le 368 (724)
T 1pjr_A 364 SRVME 368 (724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 7
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.93 E-value=1.8e-26 Score=261.24 Aligned_cols=284 Identities=21% Similarity=0.209 Sum_probs=178.4
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCceeecCCC
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNP 312 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRiG~~ 312 (690)
..||++|++|+..++.. ++++|+||||||||||+..++..+...|.+|++||||+.|+++|.+++...
T Consensus 188 ~~L~~~Q~~Av~~~~~~--~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~---------- 255 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGH--RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRT---------- 255 (574)
T ss_dssp TTCCHHHHHHHHHHTTC--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSC----------
T ss_pred CCCCHHHHHHHHHHHhC--CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhccc----------
Confidence 35999999999999864 699999999999999999999999999999999999999999998876321
Q ss_pred cccCchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEE
Q 038763 313 ARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVV 392 (690)
Q Consensus 313 ~r~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~a~Vv 392 (690)
..+++.++.... . .+... ..-....++|
T Consensus 256 --------a~Tih~ll~~~~------------------~-~~~~~-------------------------~~~~~~~dvl 283 (574)
T 3e1s_A 256 --------ASTVHRLLGYGP------------------Q-GFRHN-------------------------HLEPAPYDLL 283 (574)
T ss_dssp --------EEEHHHHTTEET------------------T-EESCS-------------------------SSSCCSCSEE
T ss_pred --------HHHHHHHHcCCc------------------c-hhhhh-------------------------hcccccCCEE
Confidence 011111000000 0 00000 0000135666
Q ss_pred EEcccccch-HHHhcCCCcccc--cceeeecCCCCCCCccccchhhhhcCCCccHHHHHHHhCCCccccccccccCCc--
Q 038763 393 LATNTGAAD-PLIRRLDTFDLV--GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMN-- 467 (690)
Q Consensus 393 ~~T~~~a~~-~~l~~~~~fD~v--~~~~VLvGD~~QLpP~v~s~~a~~~gl~~SLfeRl~~~~~~~~~~~L~~qYRm~-- 467 (690)
+..-.+..+ ..+.. .+..+ +.++|++||+.||||+.. -+.|..+.. ..+.+.|+.+||++
T Consensus 284 IIDEasml~~~~~~~--Ll~~~~~~~~lilvGD~~QL~~v~~----------g~~~~~l~~---~~~~~~L~~~~R~~~~ 348 (574)
T 3e1s_A 284 IVDEVSMMGDALMLS--LLAAVPPGARVLLVGDTDQLPPVDA----------GLPLLALAQ---AAPTIKLTQVYRQAAK 348 (574)
T ss_dssp EECCGGGCCHHHHHH--HHTTSCTTCEEEEEECTTSCCCSSS----------CCHHHHHHH---HSCEEECCCCCHHHHT
T ss_pred EEcCccCCCHHHHHH--HHHhCcCCCEEEEEecccccCCccC----------CcHHHHHHh---cCCEEEcceeEeCCCc
Confidence 655443322 21111 01111 579999999999999843 145666655 45578999999998
Q ss_pred hhHHHhhhhccCCCcccCCcccccccccCCCCCCCCCCCCCCeEEEeCCCCCCCCCCCcccccccCCCCCccCHHHHHHH
Q 038763 468 DAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIV 547 (690)
Q Consensus 468 ~~I~~f~s~~fY~g~L~~~~~v~~~~l~~~~~~~~~~~~~~p~~~~dt~~~~~~~~~~~~e~~~~~~~~S~~N~~Ea~~v 547 (690)
+.|..+++.. ..|.+.... ..+.|+....+ ...++.+
T Consensus 349 s~I~~~a~~i-~~g~~~~~~--------------------~d~~~~~~~~~----------------------~~~~~~i 385 (574)
T 3e1s_A 349 NPIIQAAHGL-LHGEAPAWG--------------------DKRLNLTEIEP----------------------DGGARRV 385 (574)
T ss_dssp CHHHHHHHHH-HTTCCCCCC--------------------BTTEEEEECCS----------------------TTCHHHH
T ss_pred cHHHHHHHHH-hCCCCcccC--------------------CCeEEEeCCCH----------------------HHHHHHH
Confidence 6799988754 444322110 11233322100 0112333
Q ss_pred HHHHHHHHHCCCCC-CcEEEEcCcHHH---HHH----HHHHhhcCCC---------------------------------
Q 038763 548 VHHVFSLICAGVSP-SAIAVQSPYVAQ---VQH----LRERLDDLPE--------------------------------- 586 (690)
Q Consensus 548 ~~~v~~L~~~g~~~-~~IgIItpY~~Q---v~~----l~~~L~~~~~--------------------------------- 586 (690)
.+.+. ++.+ .+|.|+||.+.. +.. +++.+.....
T Consensus 386 ~~~~~-----~~~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~ 460 (574)
T 3e1s_A 386 ALMVR-----ELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGM 460 (574)
T ss_dssp HHHHH-----HTTSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEE
T ss_pred HHHHh-----ccCcccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeE
Confidence 33333 4454 688888887754 333 3333311000
Q ss_pred ------------------------CCC---eEEecccCccCccccEEEEEeeecCCCCcccccCCCCceeeeeccccccE
Q 038763 587 ------------------------AAG---VEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHV 639 (690)
Q Consensus 587 ------------------------~~~---v~V~TVd~fQG~E~dvVIlS~vrsn~~~~~gfl~d~rRlNVAlTRAk~~L 639 (690)
... ....|||++||.|+|.||+.+..+. ..+.+++.+||||||||+.|
T Consensus 461 i~~~~~~~l~v~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l 535 (574)
T 3e1s_A 461 VLKAEGARLTVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRF 535 (574)
T ss_dssp EEEECSSCEEEEETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEE
T ss_pred EEcCCCCEEEEEECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcc-----ccccccceEEEEeeeeeeEE
Confidence 000 1136999999999999999887653 24567889999999999999
Q ss_pred EEEecCccc
Q 038763 640 AVVCDSSTI 648 (690)
Q Consensus 640 iivG~~~tl 648 (690)
+|+|+...|
T Consensus 536 ~lvg~~~~l 544 (574)
T 3e1s_A 536 FSAGSASAW 544 (574)
T ss_dssp EEEECHHHH
T ss_pred EEEECHHHH
Confidence 999998755
No 8
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=1e-24 Score=253.69 Aligned_cols=287 Identities=16% Similarity=0.116 Sum_probs=158.8
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc-C---CeEEEEcCChHHHHHHHHHHHhcCCceeec
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-G---ERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g---~rVLv~a~SN~AvD~l~erL~~~~~~~vRi 309 (690)
.||++|++||... .+..+|.|+||||||+|+++.|.+++.. | .+||++|+||.|+++|.+|+.+. +
T Consensus 2 ~L~~~Q~~av~~~----~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~------l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV----TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT------L 71 (673)
T ss_dssp CCCHHHHHHHHCC----SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH------S
T ss_pred CCCHHHHHHHhCC----CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH------c
Confidence 5999999999842 3468999999999999999999999874 3 69999999999999999999763 1
Q ss_pred CCCcccCchhccccHHHHHHHHHHHHHHHH-----------------H------------HHHHHHHHHHHHH----hcc
Q 038763 310 GNPARISPAVASKSLGEIVKSKLASFVAEF-----------------E------------RKKSDLRKDLRQC----LKD 356 (690)
Q Consensus 310 G~~~r~~~~~~~~~l~~~~~~~l~~~~~~~-----------------~------------~~~~~~~~~l~~~----~~~ 356 (690)
|... ...+.-.+++.++...+..+...+ . .....+...+... +..
T Consensus 72 ~~~~--~~~~~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~ 149 (673)
T 1uaa_A 72 GRKE--ARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTP 149 (673)
T ss_dssp CTTT--TTTSEEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTTTCCT
T ss_pred Cccc--ccCCEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHcCCCH
Confidence 1100 011223344444433332221100 0 0000000001100 000
Q ss_pred hhH--------HHHHHHHHHHHHHHHHHHH------------------HHHHHHHhhcCcEEEEcccccchHHHhcCCCc
Q 038763 357 DSL--------AAGIRQLLKQLGKTLKKKE------------------KETVKEVLSSAQVVLATNTGAADPLIRRLDTF 410 (690)
Q Consensus 357 ~~~--------~~~~~~~~~~l~~~~~~~~------------------~~~~~~il~~a~Vv~~T~~~a~~~~l~~~~~f 410 (690)
... ...+...+..+.+.++... ......+-...+.|+..-..-.++.... .+
T Consensus 150 ~~~~~~~~~~~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDt~~~Q~~--ll 227 (673)
T 1uaa_A 150 SQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYE--LV 227 (673)
T ss_dssp THHHHTCCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCGGGCBHHHHH--HH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhChHHHHHHHhhCcEEEEeccccCCHHHHH--HH
Confidence 000 1111111111111111100 0001111122334443322211111000 00
Q ss_pred ccc---cceeeecCCCCCCCccccchhhhhcCCCccHHHHHHHhCCCccccccccccCCchhHHHhhhhccCCCcccCCc
Q 038763 411 DLV---GKRCILAGDQCQLAPVILSRKALEGGIGVSLLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSS 487 (690)
Q Consensus 411 D~v---~~~~VLvGD~~QLpP~v~s~~a~~~gl~~SLfeRl~~~~~~~~~~~L~~qYRm~~~I~~f~s~~fY~g~L~~~~ 487 (690)
..+ +.++++|||++| .| ....|.+...|.++...+++...+.|..|||+++.|.+++|..|.++......
T Consensus 228 ~~L~~~~~~l~~vGD~~Q---sI----y~frga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~~ 300 (673)
T 1uaa_A 228 KLLVGSRARFTVVGDDDQ---SI----YSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEK 300 (673)
T ss_dssp HHHHTTTCCEEEECCGGG---CC----CGGGTBCTTHHHHHHHHSTTCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSCC
T ss_pred HHHhcCCCeEEEEeCchh---hh----hhccCCCHHHHHHHHHhCCCCeEEECCCCCCCChHHHHHHHHHHHhchhcccc
Confidence 000 367999999999 23 23457778889888887877777899999999999999999998764321110
Q ss_pred ccccccccCCCCCCCCCCCCCCeEEEeCCCCCCCCCCCcccccccCCCCCccCHHHHHHHHHHHHHHH-HCCCCCCcEEE
Q 038763 488 TVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLI-CAGVSPSAIAV 566 (690)
Q Consensus 488 ~v~~~~l~~~~~~~~~~~~~~p~~~~dt~~~~~~~~~~~~e~~~~~~~~S~~N~~Ea~~v~~~v~~L~-~~g~~~~~IgI 566 (690)
. + ......+.++.++.. .....|++.|+..|..++ ..|++++||||
T Consensus 301 ~-----l------~~~~~~g~~i~~~~~----------------------~~~~~e~~~va~~I~~l~~~~g~~~~diaV 347 (673)
T 1uaa_A 301 R-----L------FSELGYGAELKVLSA----------------------NNEEHEAERVTGELIAHHFVNKTQYKDYAI 347 (673)
T ss_dssp C-----C------CBSSCCCCCBEEEEC----------------------SSHHHHHHHHHHHHHHHHHHHCCCTTTEEE
T ss_pred c-----c------cccCCCCCCceEEec----------------------CCHHHHHHHHHHHHHHHHhccCCCccCEEE
Confidence 0 0 000001122222211 113579999999999998 67999999999
Q ss_pred EcCcHHHH
Q 038763 567 QSPYVAQV 574 (690)
Q Consensus 567 ItpY~~Qv 574 (690)
|++.+.|.
T Consensus 348 L~r~~~~~ 355 (673)
T 1uaa_A 348 LYRGNHQS 355 (673)
T ss_dssp EESSSGGG
T ss_pred EEechhhH
Confidence 99876543
No 9
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.91 E-value=4e-25 Score=245.31 Aligned_cols=68 Identities=32% Similarity=0.468 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHHhcC---CCCeEEEeCCCCCChhHHHHHHHHHHHHcCC-eEEEEcCChHHHHHHHHHH
Q 038763 232 GKTFDDSQKKAIALGLNK---KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKL 299 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~---~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~-rVLv~a~SN~AvD~l~erL 299 (690)
+..||+.|++|+..++.. ..+..+|+||||||||+++..++..+...+. +|+++||||.|+++|.+++
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 457999999999976542 2358999999999999999999999999886 8999999999999999887
No 10
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.87 E-value=2e-22 Score=230.44 Aligned_cols=354 Identities=21% Similarity=0.240 Sum_probs=167.3
Q ss_pred CHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH----cCCeEEEEcCChHHHHHHHHHHHhcCCceeecCC
Q 038763 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ----QGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311 (690)
Q Consensus 236 N~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~----~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRiG~ 311 (690)
++.|+.|+..++.. ++++|+||||||||||++.++..+.. .+.+|++||||+.|+++|.+.+...... +.+..
T Consensus 151 ~~~Q~~Ai~~~l~~--~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~-l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTR--RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ-LPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTB--SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHH-SSCCS
T ss_pred CHHHHHHHHHHhcC--CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhc-CCCCH
Confidence 78999999999964 58999999999999999999999874 4569999999999999999887642100 00000
Q ss_pred CcccCchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcE
Q 038763 312 PARISPAVASKSLGEIVKSKLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQV 391 (690)
Q Consensus 312 ~~r~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~a~V 391 (690)
..+........+++.++...... ..+ .... ...+ ..++
T Consensus 228 ~~~~~~~~~~~Tih~ll~~~~~~-------------~~~------------------------~~~~----~~~l-~~d~ 265 (608)
T 1w36_D 228 EQKKRIPEDASTLHRLLGAQPGS-------------QRL------------------------RHHA----GNPL-HLDV 265 (608)
T ss_dssp CCCCSCSCCCBTTTSCC------------------------------------------------CT----TSCC-SCSE
T ss_pred HHHhccchhhhhhHhhhccCCCc-------------hHH------------------------Hhcc----CCCC-CCCE
Confidence 00000000011111111000000 000 0000 0011 3455
Q ss_pred EEEcccccch-HHHhcCCCcccc--cceeeecCCCCCCCccccch------hhhhcCCCccHHHHHHHhCCC--------
Q 038763 392 VLATNTGAAD-PLIRRLDTFDLV--GKRCILAGDQCQLAPVILSR------KALEGGIGVSLLERAATLHEG-------- 454 (690)
Q Consensus 392 v~~T~~~a~~-~~l~~~~~fD~v--~~~~VLvGD~~QLpP~v~s~------~a~~~gl~~SLfeRl~~~~~~-------- 454 (690)
++..-.+..+ ..+.. .+..+ ..++||+||+.||||+.... ...+.|++.++++++...++.
T Consensus 266 lIIDEAsml~~~~~~~--Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~ 343 (608)
T 1w36_D 266 LVVDEASMIDLPMMSR--LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT 343 (608)
T ss_dssp EEECSGGGCBHHHHHH--HHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCCCSTT
T ss_pred EEEechhhCCHHHHHH--HHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCccccccccc
Confidence 5554333222 11111 01111 57999999999999996422 122467888999998765421
Q ss_pred -cc-----ccccccccCCchh--HHHhhhhccCCCcccCCcccccccccCCCCCCC------------------------
Q 038763 455 -VL-----ATKLTTQYRMNDA--IASWASKEMYGGSLISSSTVASHLLVDTPFVKP------------------------ 502 (690)
Q Consensus 455 -~~-----~~~L~~qYRm~~~--I~~f~s~~fY~g~L~~~~~v~~~~l~~~~~~~~------------------------ 502 (690)
.+ .+.|+++||+++. |..+++.. ..|.......+-.....+..++..
T Consensus 344 ~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (608)
T 1w36_D 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL 422 (608)
T ss_dssp TTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCHHHHHTTTSGGGCCSSBCCBCCSTTTHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccEEecceeeeeCCcchHHHHHHHH-hcCCchhHHHHhcCCCCceEEEecCChHHHHHHHHHHHHHHHHHHHHh
Confidence 11 5789999999987 99988654 444322100000000000000000
Q ss_pred ---CCCCC-----CCeEEE-eCC-CCCCCCCCC--cccccccCCCC---CccCHHHHHHHHHHHHHHHHCCCCCCcEEEE
Q 038763 503 ---TWITQ-----CPLLLL-DTR-LPYGSLSLG--CEEHLDLAGTG---SFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567 (690)
Q Consensus 503 ---~~~~~-----~p~~~~-dt~-~~~~~~~~~--~~e~~~~~~~~---S~~N~~Ea~~v~~~v~~L~~~g~~~~~IgII 567 (690)
.+... ..+.++ .+. ++++....+ ..+.....+.. ......+-+.|+. .+.-...|+-..|||+|
T Consensus 423 ~~~~~~~~~~~~~~~~~vL~~~~~g~~gv~~lN~~i~~~l~~~~~~~~~~~~~~~~Gd~Vm~-~~Nd~~~gl~NGdiG~V 501 (608)
T 1w36_D 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI-ARNDSALGLFNGDIGIA 501 (608)
T ss_dssp HTCCCSSTTHHHHTTEEEEESCSSSSSSHHHHHHHHHGGGTSCC------------------------------------
T ss_pred hcccCHHHHHHHHhhhhhhCCccCCchhHHHHHHHHHHHhCccCcccccccccccCCCeeeE-eeechhhcccCCCeEEE
Confidence 00000 001111 111 011000000 00000000000 0000011111111 11112236677899999
Q ss_pred cCcHHHHHHHHHHhh------------cCCCCCCeEEecccCccCccccEEEEEeeecCCCCcccccCCCCceeeeeccc
Q 038763 568 SPYVAQVQHLRERLD------------DLPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRA 635 (690)
Q Consensus 568 tpY~~Qv~~l~~~L~------------~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrsn~~~~~gfl~d~rRlNVAlTRA 635 (690)
++.... ++-.+. ..+......+.|||++||.|+|.||+.+..... -+.+.+.+|||+|||
T Consensus 502 ~~~~~~---l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~-----~~~~~~~~Yva~tRa 573 (608)
T 1w36_D 502 LDRGQG---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT-----PVVTRELVYTAVTRA 573 (608)
T ss_dssp ------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCC-----SSSCHHHHHHHHTTB
T ss_pred EEcCCe---EEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCCcc-----chhhhhhHHhhhhhh
Confidence 987532 111111 112244577999999999999999998754322 233678899999999
Q ss_pred cccEEEEecCc
Q 038763 636 CKHVAVVCDSS 646 (690)
Q Consensus 636 k~~LiivG~~~ 646 (690)
|+.|+++|+..
T Consensus 574 ~~~l~l~~~~~ 584 (608)
T 1w36_D 574 RRRLSLYADER 584 (608)
T ss_dssp SSCEEEECCTT
T ss_pred hceEEEEECHH
Confidence 99999999765
No 11
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.76 E-value=3.7e-18 Score=184.15 Aligned_cols=272 Identities=14% Similarity=0.150 Sum_probs=161.0
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCceeecCCCcccCchhccccHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGNPARISPAVASKSLGEIVKS 330 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRiG~~~r~~~~~~~~~l~~~~~~ 330 (690)
..+.+|.||||||||+++.+.+. ..++|++|||+.|++++.+++.+.+. +. .....-.+++..+.+
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~-----~~~~lVlTpT~~aa~~l~~kl~~~~~-------~~--~~~~~V~T~dsfL~~ 226 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN-----FEEDLILVPGRQAAEMIRRRANASGI-------IV--ATKDNVRTVDSFLMN 226 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC-----TTTCEEEESCHHHHHHHHHHHTTTSC-------CC--CCTTTEEEHHHHHHT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc-----cCCeEEEeCCHHHHHHHHHHhhhcCc-------cc--cccceEEEeHHhhcC
Confidence 35899999999999999988764 26889999999999999999965321 00 001111222221100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEcccccch-HHHhcCCC
Q 038763 331 KLASFVAEFERKKSDLRKDLRQCLKDDSLAAGIRQLLKQLGKTLKKKEKETVKEVLSSAQVVLATNTGAAD-PLIRRLDT 409 (690)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~il~~a~Vv~~T~~~a~~-~~l~~~~~ 409 (690)
. . ..-...+++++..-.+..+ ..+...
T Consensus 227 ----------------------~------------------------~----~~~~~~~d~liiDE~sm~~~~~l~~l-- 254 (446)
T 3vkw_A 227 ----------------------Y------------------------G----KGARCQFKRLFIDEGLMLHTGCVNFL-- 254 (446)
T ss_dssp ----------------------T------------------------T----SSCCCCCSEEEEETGGGSCHHHHHHH--
T ss_pred ----------------------C------------------------C----CCCCCcCCEEEEeCcccCCHHHHHHH--
Confidence 0 0 0000025566555433322 111100
Q ss_pred cccc-cceeeecCCCCCCCccccchhhhhcCCCcc-HHHHHHHhCCCccccccccccCCchhHHHhhhhccCCCcccCCc
Q 038763 410 FDLV-GKRCILAGDQCQLAPVILSRKALEGGIGVS-LLERAATLHEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSS 487 (690)
Q Consensus 410 fD~v-~~~~VLvGD~~QLpP~v~s~~a~~~gl~~S-LfeRl~~~~~~~~~~~L~~qYRm~~~I~~f~s~~fY~g~L~~~~ 487 (690)
...+ +.++|++||++||||+..... +... -|.++ ..+ ....+..+|||+..++.|.+.. |++++.+..
T Consensus 255 ~~~~~~~~vilvGD~~Qlp~v~~~~~-----~~~~~~~~~l---~~~-~~~~~~~SyR~p~dv~~lLs~l-Y~~~V~t~s 324 (446)
T 3vkw_A 255 VEMSLCDIAYVYGDTQQIPYINRVTG-----FPYPAHFAKL---EVD-EVETRRTTLRCPADVTHFLNQR-YEGHVMCTS 324 (446)
T ss_dssp HHHTTCSEEEEEECTTSCCCCCCSTT-----CCCCHHHHSC---CCS-EEEEECEESSCCHHHHHHHHTT-SSSCCEECC
T ss_pred HHhCCCCEEEEecCcccccCcccCCC-----ccchhhhhhc---ccC-cEEEeeeEeCCCHHHHHHHHhh-cCCceEECC
Confidence 0001 479999999999999965431 2211 12222 111 3356899999999999999986 877654321
Q ss_pred ccccccccCCCCCCCCCCCCCCeEEEeCCCCCCCCCCCcccccccCCCCCccCHHHHHHHHHHHHHHHHCCCCCCcEEEE
Q 038763 488 TVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQ 567 (690)
Q Consensus 488 ~v~~~~l~~~~~~~~~~~~~~p~~~~dt~~~~~~~~~~~~e~~~~~~~~S~~N~~Ea~~v~~~v~~L~~~g~~~~~IgII 567 (690)
.+. ..+.+.+..+ ...++.. ..++ .--||
T Consensus 325 ~~~-----------------~sv~~~~I~~------------------~~~~~~~---------------~~~~-~g~iL 353 (446)
T 3vkw_A 325 SEK-----------------KSVSQEMVSG------------------AASINPV---------------SKPL-KGKIL 353 (446)
T ss_dssp CCC-----------------CCEEEEECCC------------------GGGCCTT---------------TSCC-CSEEE
T ss_pred CcC-----------------ceEEEecccc------------------ccccccc---------------cCCC-CCeEE
Confidence 111 1122211110 0000000 0112 22577
Q ss_pred cCcHHHHHHHHHHhhcCCCCCCeE-EecccCccCccccEEEEEeeecCCCCcccccCCCCceeeeeccccccEEEEecCc
Q 038763 568 SPYVAQVQHLRERLDDLPEAAGVE-VATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSS 646 (690)
Q Consensus 568 tpY~~Qv~~l~~~L~~~~~~~~v~-V~TVd~fQG~E~dvVIlS~vrsn~~~~~gfl~d~rRlNVAlTRAk~~LiivG~~~ 646 (690)
|+..+....+.+. +++ +.||+++||.|+|.|.+ ||.+......|..+..+++||+||||+.|.++.-
T Consensus 354 tftq~~k~~L~~~--------G~~~~~Tv~e~QG~tf~~Vtl--vr~~~~~~~l~~~~~~~~~VALTRh~~~L~~~tv-- 421 (446)
T 3vkw_A 354 TFTQSDKEALLSR--------GYADVHTVHEVQGETYADVSL--VRLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTV-- 421 (446)
T ss_dssp ESSHHHHHHHHTT--------TCCSCEETGGGTTCCEEEEEE--EECCCSCCTTCSTTCHHHHHHHSSEEEEEEEEES--
T ss_pred EcCHHHHHHHHHh--------CCCCccCHHHcCCcccCeEEE--EECCCCCcccccCCccceEEEeecCCCEEEEEEe--
Confidence 8888887777652 345 99999999999999887 5554333333556788999999999999999852
Q ss_pred ccccChHHHHHHHHHHHc
Q 038763 647 TICHNTFLARLLRHIRYF 664 (690)
Q Consensus 647 tl~~~~~~~~l~~~~~~~ 664 (690)
. +..|.+.+..++.-
T Consensus 422 --~-~D~~~~~i~~~~~~ 436 (446)
T 3vkw_A 422 --V-MDPLVSIIRDLERV 436 (446)
T ss_dssp --S-CCHHHHHHHHHHHS
T ss_pred --c-CChHHHHHHHhhhh
Confidence 2 55666677766543
No 12
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.73 E-value=2.6e-17 Score=202.53 Aligned_cols=64 Identities=30% Similarity=0.467 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcC------CeEEEEcCChHHHHHHHHHHHh
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG------ERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g------~rVLv~a~SN~AvD~l~erL~~ 301 (690)
.||++|++||... ....+|.|+||||||+|+++.|.+++..+ .+||++||||.|+++|.+|+..
T Consensus 10 ~~t~eQ~~~i~~~----~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST----GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC----SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC----CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 5999999999853 23579999999999999999999998764 4899999999999999999865
No 13
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.57 E-value=5.3e-15 Score=141.65 Aligned_cols=141 Identities=20% Similarity=0.188 Sum_probs=100.5
Q ss_pred ccccCCchhHHHhhhhccCCCcccCCcccccccccCCCCCCCCCCCCCCeEEEeCCCCCCCCCCCcccccccCCCCCccC
Q 038763 461 TTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTRLPYGSLSLGCEEHLDLAGTGSFYN 540 (690)
Q Consensus 461 ~~qYRm~~~I~~f~s~~fY~g~L~~~~~v~~~~l~~~~~~~~~~~~~~p~~~~dt~~~~~~~~~~~~e~~~~~~~~S~~N 540 (690)
++|||++++|++|+|..+.++.- +. +.. ..+..|.++ .. ...
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~~-----~~-------~~~---~~G~~p~~~-~~----------------------~~~ 43 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGEA-----VT-------AFD---RQGDLPNVV-VT----------------------PNF 43 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC-----------------------CCCCCCEEE-EE----------------------SSH
T ss_pred CCCCCChHHHHHHHHHHhcCCCc-----cc-------CCC---CCCCCCEEE-Ee----------------------CCH
Confidence 57999999999999988865420 00 000 011123222 11 012
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCcEEEEcCcHHHHHHHHHHhhcCC------------CCCCeEEecccCccCccccEEEE
Q 038763 541 EGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQHLRERLDDLP------------EAAGVEVATIDSFQGREADAVII 608 (690)
Q Consensus 541 ~~Ea~~v~~~v~~L~~~g~~~~~IgIItpY~~Qv~~l~~~L~~~~------------~~~~v~V~TVd~fQG~E~dvVIl 608 (690)
.+|+..|++.+.. ...| +++||||+|++.|...+.+.|.... ...+|.|.|+|.+||.|+|+||+
T Consensus 44 ~~e~~~i~~~I~~-~~~g--~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~ 120 (174)
T 3dmn_A 44 EAGVDQVVDQLAM-NDSE--RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIV 120 (174)
T ss_dssp HHHHHHHHHHHHH-HHHT--TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEE
T ss_pred HHHHHHHHHHHHH-hccC--CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEE
Confidence 4788999998888 5555 6899999999999999999986531 12469999999999999999999
Q ss_pred EeeecCCCCcccccCCCCceeeeeccccccEEEEecC
Q 038763 609 SMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDS 645 (690)
Q Consensus 609 S~vrsn~~~~~gfl~d~rRlNVAlTRAk~~LiivG~~ 645 (690)
..+.... .....+.|.||||+||||+.|+|++..
T Consensus 121 ~~~~~~~---~~~~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 121 WNANQEN---YQREDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp ETCBTTT---SCSGGGHHHHHHHHTTEEEEEEEEEES
T ss_pred ecCCccc---CCChhhhceeEEEecCcccEEEEEeCC
Confidence 8765432 122456789999999999999999864
No 14
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.57 E-value=1.5e-14 Score=177.40 Aligned_cols=49 Identities=29% Similarity=0.388 Sum_probs=43.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHc-C-----------CeEEEEcCChHHHHHHHHHHHh
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQ-G-----------ERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~-g-----------~rVLv~a~SN~AvD~l~erL~~ 301 (690)
..+|.+++|||||+|+++++..++.. | .+|||+|+||+|+.+|.+|+.+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 35999999999999999999998852 2 4899999999999999999865
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=98.99 E-value=4.3e-09 Score=129.30 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=71.7
Q ss_pred CCCccHHHHHHHh--CCCccccccccccCCchhHHHhhhhccCCCcccCCcccccccccCCCCCCCCCCCCCCeEEEeCC
Q 038763 439 GIGVSLLERAATL--HEGVLATKLTTQYRMNDAIASWASKEMYGGSLISSSTVASHLLVDTPFVKPTWITQCPLLLLDTR 516 (690)
Q Consensus 439 gl~~SLfeRl~~~--~~~~~~~~L~~qYRm~~~I~~f~s~~fY~g~L~~~~~v~~~~l~~~~~~~~~~~~~~p~~~~dt~ 516 (690)
|.....|.++... ++....+.|..|||+++.|.++.++.+.... . .+.. ....++.++...
T Consensus 256 ga~~~~l~~~~~~~~~~~~~~~~L~~nyRs~~~il~~i~~~~~~~~--~-----------~~~~----~~~~~i~i~~~~ 318 (1166)
T 3u4q_B 256 GKTYYRLHQKAKELNLDITYKELSGTERHTKTPELAHLEAQYEARP--A-----------IPYA----EKQEALTVMQAA 318 (1166)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSTTTTCHHHHHHHHSSSCSS--C-----------CCCC----SCCSSEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCcccceecCCCCCCCCHHHHHHHHhHhhcC--C-----------CccC----CCCCCeEEEEcC
Confidence 3344455566544 4444567899999999999998877553210 0 0000 011233332111
Q ss_pred CCCCCCCCCcccccccCCCCCccCHHHHHHHHHHHHHHHH-CCCCCCcEEEEcCcH-HHHHHHHHHhhcC
Q 038763 517 LPYGSLSLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLIC-AGVSPSAIAVQSPYV-AQVQHLRERLDDL 584 (690)
Q Consensus 517 ~~~~~~~~~~~e~~~~~~~~S~~N~~Ea~~v~~~v~~L~~-~g~~~~~IgIItpY~-~Qv~~l~~~L~~~ 584 (690)
....|++.|+..|..++. .|++++||||+++.+ .|...+...|...
T Consensus 319 ----------------------~~~~Ea~~ia~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~ 366 (1166)
T 3u4q_B 319 ----------------------NRRAELEGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADY 366 (1166)
T ss_dssp ----------------------SHHHHHHHHHHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHT
T ss_pred ----------------------ChHHHHHHHHHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHc
Confidence 135799999999999998 799999999999998 5899999999874
No 16
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.11 E-value=9.2e-06 Score=81.19 Aligned_cols=75 Identities=27% Similarity=0.275 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCc-eeecCC
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN-IVRVGN 311 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~-~vRiG~ 311 (690)
..|++.|.+|+...+... -.+|.||+|+|||.++..++..+ +.++|+++|+...++++.+.+.+.++. +..++.
T Consensus 92 ~~l~~~Q~~ai~~~~~~~--~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g 166 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK--RGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG 166 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS--EEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESS
T ss_pred CCcCHHHHHHHHHHHhCC--CEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 369999999999887653 48999999999999987776654 789999999999999999999887766 555544
Q ss_pred C
Q 038763 312 P 312 (690)
Q Consensus 312 ~ 312 (690)
.
T Consensus 167 ~ 167 (237)
T 2fz4_A 167 R 167 (237)
T ss_dssp S
T ss_pred C
Confidence 3
No 17
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.00 E-value=1.5e-05 Score=77.39 Aligned_cols=69 Identities=33% Similarity=0.299 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH------cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ------QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~------~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
...+++.|++|+..++... -.++++|+|||||.+....+.+.+. .+.++|+++|+...++++.+.+.+.
T Consensus 21 ~~~~~~~Q~~~i~~~~~~~--~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 21 LTTPTPIQAAALPLALEGK--DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp CCSCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCC--CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 3469999999999988753 4799999999999986555555442 4678999999999999999998875
No 18
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.98 E-value=1.4e-05 Score=81.97 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCC-eEEEEcCChHHHHHHHHHHHhcC
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDVG 303 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~-rVLv~a~SN~AvD~l~erL~~~~ 303 (690)
.|++.|.+|+..++... -.+|.+|+|||||.++..++..++..+. ++|+++|++..+++..+++.+.+
T Consensus 113 ~l~~~Q~~ai~~~l~~~--~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR--RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHS--EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhcC--CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 59999999999988753 4688999999999999888888776654 99999999999999999998753
No 19
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.97 E-value=1.2e-05 Score=78.51 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc------CCeEEEEcCChHHHHH-HHHHHHh
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ------GERVLVTAPTNAAVDN-MVEKLSD 301 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~------g~rVLv~a~SN~AvD~-l~erL~~ 301 (690)
..|++.|.+|+..++... -.+|.+|+|||||.+....+..++.. +.++|+++|+...+++ +.+.+..
T Consensus 32 ~~l~~~Q~~~i~~~~~~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGK--NIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCCCHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CCchHHHHHHHHHHhcCC--CEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 369999999999988643 47999999999999988887776643 5799999999999888 5444443
No 20
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.91 E-value=3.5e-05 Score=76.60 Aligned_cols=70 Identities=27% Similarity=0.317 Sum_probs=56.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHH-H------cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV-Q------QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 231 ~~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~-~------~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
....+++.|.+|+..++... -.+|++|+|||||.+....+.+.+ . .+.++|+++||...+.++.+.+.+.
T Consensus 44 ~~~~~~~~Q~~~i~~~~~~~--~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 44 QYRLVTEIQKQTIGLALQGK--DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp TCCBCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCC--CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 34569999999999988753 479999999999997655444433 2 4679999999999999999988775
No 21
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.84 E-value=3.6e-05 Score=75.70 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHH-HHHHHH--cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEI-IARAVQ--QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~-i~~l~~--~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++... -.+|.+|+|||||.+..-. +..+.. .+.++|+++|+...++++.+.+.+.
T Consensus 34 ~~~~~~~Q~~~i~~~~~~~--~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 34 FEEPSAIQQRAIMPIIEGH--DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp CCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhcCC--CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 3469999999999988753 3799999999999884433 333322 3569999999999999999888764
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.82 E-value=3.6e-05 Score=81.33 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=58.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH--cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ--QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~--~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|++|+..++... .-.++.+|+|||||.+....+..++. .+.++|+++|+...++++.+.+.+.
T Consensus 26 ~~~~~~~Q~~~i~~~~~~~-~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 26 FEKPTDIQMKVIPLFLNDE-YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp CCSCCHHHHHHHHHHHHTC-SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC-CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 3469999999999998753 46899999999999987777666654 3679999999999999999998764
No 23
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.80 E-value=2.7e-05 Score=77.62 Aligned_cols=69 Identities=23% Similarity=0.259 Sum_probs=56.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++... -.+|.+|+|||||.+....+.+.+. .+.++|+++||...+.++.+.+.+.
T Consensus 50 ~~~~~~~Q~~ai~~i~~~~--~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 50 FEKPSAIQQRAIIPCIKGY--DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp CCSCCHHHHHHHHHHHTTC--CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC--CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 4569999999999988753 3799999999999875555554443 4579999999999999999888764
No 24
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.80 E-value=4.9e-05 Score=74.53 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc---CCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ---GERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~---g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++... -.++++|+|||||.+....+...+.. +.++|+++||...++++.+.+.+.
T Consensus 34 ~~~~~~~Q~~~i~~~~~~~--~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 34 FEHPSEVQHECIPQAILGM--DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCCCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC--CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 3469999999999988753 37999999999998776666655443 348999999999999998888764
No 25
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.80 E-value=4.8e-05 Score=73.68 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++... -.++.+|+|||||.+....+...+. .+.++|+++||...+.++.+.+.+.
T Consensus 23 ~~~~~~~Q~~~i~~~~~~~--~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 23 WEKPSPIQEESIPIALSGR--DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp CCSCCHHHHHHHHHHHTTC--CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCC--CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 3569999999999988753 4799999999999876544444432 3468999999999999998888764
No 26
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.77 E-value=7.2e-05 Score=73.84 Aligned_cols=69 Identities=23% Similarity=0.105 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHH---------HcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV---------QQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~---------~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++... -.++.+|.|||||.+..-.+...+ ..+.++|+++||...+.++.+.+.+.
T Consensus 40 ~~~~~~~Q~~~i~~~~~~~--~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 40 ILKPTPIQSQAWPIILQGI--DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CCSCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 3469999999999988753 369999999999987544333322 15678999999999999999988774
No 27
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.74 E-value=0.00016 Score=72.56 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc------------CCeEEEEcCChHHHHHHHHHH
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ------------GERVLVTAPTNAAVDNMVEKL 299 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~------------g~rVLv~a~SN~AvD~l~erL 299 (690)
+..+++.|.+|+..++... -.++++|.|||||.+....+.+.+.. +.++|+++||...+.++.+.+
T Consensus 43 ~~~~~~~Q~~~i~~i~~~~--~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 43 YQRPTPIQKNAIPAILEHR--DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp CCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 4569999999999988753 37899999999998765555444431 358999999999999998888
Q ss_pred Hhc
Q 038763 300 SDV 302 (690)
Q Consensus 300 ~~~ 302 (690)
...
T Consensus 121 ~~~ 123 (253)
T 1wrb_A 121 QKF 123 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 28
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.74 E-value=8.2e-05 Score=74.28 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH----cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ----QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~----~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++... + .++++|.|||||.+....+.+.+. .+.++|+++||...+.++.+.+.+.
T Consensus 49 ~~~~~~~Q~~~i~~~~~~~-~-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 49 FQMPTPIQMQAIPVMLHGR-E-LLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp CCSCCHHHHHHHHHHHTTC-C-EEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC-C-EEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3469999999999988753 3 799999999999985444444443 4568999999999999999988764
No 29
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.71 E-value=0.00013 Score=72.83 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHH-HHHHHH-------cCCeEEEEcCChHHHHHHHHHHHh
Q 038763 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEI-IARAVQ-------QGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 231 ~~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~-i~~l~~-------~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
.+..+++.|.+|+..++... -.++.+|.|||||.+..-. +..+.. .+.++|+++||...+.++.+.+.+
T Consensus 48 g~~~~~~~Q~~~i~~~~~g~--~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 124 (242)
T 3fe2_A 48 NFTEPTAIQAQGWPVALSGL--DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAE 124 (242)
T ss_dssp TCCSCCHHHHHHHHHHHHTC--CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCC--CEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 45569999999999988753 4789999999999885444 444432 356899999999999999877765
No 30
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.70 E-value=7.4e-05 Score=79.71 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++..+..-.+|++|.|||||.+....+...+. .+.++|+++|+...++++.+.+.+.
T Consensus 25 ~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 25 FQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp CCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH
Confidence 3469999999999998753245799999999999987666655543 4579999999999999999998774
No 31
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.69 E-value=5.4e-05 Score=74.29 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++... -.++.+|.|||||.+....+.+.+. .+.++|+++||...+.++.+.+.+.
T Consensus 24 ~~~~~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 24 FYKPTEIQERIIPGALRGE--SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp CCSCCHHHHHHHHHHHHTC--CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 3468999999999988753 3689999999999875555444433 3568999999999999998887653
No 32
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.69 E-value=7.8e-05 Score=75.52 Aligned_cols=69 Identities=23% Similarity=0.273 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHH-HHH------cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQ------QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~-l~~------~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++... + .++++|.|||||.+..-.+.+ +.. .+.++|+++||...+.++.+.+.+.
T Consensus 74 ~~~~~~~Q~~~i~~~~~~~-~-~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 74 FTNMTEIQHKSIRPLLEGR-D-LLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp CCBCCHHHHHHHHHHHHTC-C-CEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC-c-EEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 3459999999999988753 3 699999999999985544443 333 4778999999999999999888774
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.68 E-value=9.3e-05 Score=80.06 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc---CCceeec
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV---GLNIVRV 309 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~---~~~~vRi 309 (690)
++++.|.+|+..++... -.++++|.|||||......+......+.++|+++||...+.++.+++.+. ++++..+
T Consensus 21 ~~~~~Q~~~i~~i~~~~--~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~ 97 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGK--SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF 97 (414)
T ss_dssp CCCHHHHHHHHHHTTTC--CEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEEC
T ss_pred CCCHHHHHHHHHHhcCC--CEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEE
Confidence 47899999999998753 47999999999999665555666678899999999999999999999884 4444443
No 34
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.68 E-value=7.6e-05 Score=83.14 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCC-eEEEEcCChHHHHHHHHHHHhc
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~-rVLv~a~SN~AvD~l~erL~~~ 302 (690)
.|++.|.+|+..++... -.+|+||.|+|||.+....+..++..++ ++|+++|+...+++..+++.+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~--~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNR--RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp CCCHHHHHHHHHHHHHS--EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcC--CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 69999999999988753 4799999999999999888888776665 9999999999999999999775
No 35
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.66 E-value=0.00012 Score=76.29 Aligned_cols=65 Identities=29% Similarity=0.467 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
..|++.|++|+..++... -.+|.+|+|+|||.+....+. ..+.++|+++|+...+.++.+++.+.
T Consensus 15 ~~l~~~Q~~~i~~i~~~~--~~lv~~~TGsGKT~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGK--NVVVRAKTGSGKTAAYAIPIL---ELGMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHH---HHTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCC--CEEEEcCCCCcHHHHHHHHHH---hhcCCEEEEeCCHHHHHHHHHHHHHH
Confidence 469999999999888653 479999999999987654443 35889999999999999999998764
No 36
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.65 E-value=0.00014 Score=73.04 Aligned_cols=69 Identities=25% Similarity=0.244 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHH-HHHc--CCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQ--GERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~-l~~~--g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++... -.++.+|.|||||.+....+.+ +... +.++|+++||...++++.+.+.+.
T Consensus 63 ~~~~~~~Q~~~i~~i~~~~--~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 63 WTKPTKIQIEAIPLALQGR--DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp CCSCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC--CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4569999999999988753 4799999999999875544444 4443 357999999999999998887654
No 37
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.65 E-value=0.00019 Score=79.11 Aligned_cols=75 Identities=27% Similarity=0.281 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCc-eeecCCC
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN-IVRVGNP 312 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~-~vRiG~~ 312 (690)
.|++.|.+|+..++... -.+|++|.|+|||.+....+..+ +.++||++|+...+.+..+++.+.+++ +..++..
T Consensus 93 ~l~~~Q~~ai~~i~~~~--~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~ 167 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDK--RGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGR 167 (472)
T ss_dssp CBCHHHHHHHHHHTTTT--EEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSS
T ss_pred CcCHHHHHHHHHHHhcC--CEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCC
Confidence 69999999999888653 48999999999999987777665 789999999999999999999988777 6555544
Q ss_pred c
Q 038763 313 A 313 (690)
Q Consensus 313 ~ 313 (690)
.
T Consensus 168 ~ 168 (472)
T 2fwr_A 168 I 168 (472)
T ss_dssp C
T ss_pred c
Confidence 3
No 38
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.62 E-value=0.00012 Score=85.17 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHH-HHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 231 ~~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~-l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
.+..|++.|.+|+..++.. +...+|.||+|||||+.+...+.. +...|.++++++|+...+.+..+++..
T Consensus 27 g~~~l~~~Q~~~i~~~~~~-~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~ 97 (715)
T 2va8_A 27 GIKKLNPPQTEAVKKGLLE-GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKD 97 (715)
T ss_dssp SCCBCCHHHHHHHHTTTTT-TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHhcC-CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 3457999999999985544 356899999999999998655554 444788999999999999999999843
No 39
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.58 E-value=0.00017 Score=71.31 Aligned_cols=69 Identities=28% Similarity=0.316 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHH-HHHHHHH--cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKE-IIARAVQ--QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~-~i~~l~~--~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++... -.++++|.|||||.+..- ++..+.. .+.++|+++||...++++.+.+.+.
T Consensus 44 ~~~~~~~Q~~~i~~~~~~~--~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 44 FERPSPVQLKAIPLGRCGL--DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp CCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC--CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4569999999999988753 379999999999987443 3344332 3579999999999999999988775
No 40
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.56 E-value=0.00013 Score=78.21 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..|++.|++|+..++... -.+|.+|+|||||.+....+...+. .+.++|+++|+...++++.+.+.+.
T Consensus 41 ~~~~~~~Q~~~i~~i~~~~--~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 41 FEKPSPIQEEAIPVAITGR--DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp CCSCCHHHHHHHHHHHHTC--CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCC--CEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 3469999999999988753 3799999999999876665555544 3568999999999999999888764
No 41
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.53 E-value=0.00018 Score=77.31 Aligned_cols=72 Identities=22% Similarity=0.186 Sum_probs=56.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 231 ~~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
.+..+++.|.+|+..++.....-.+|++|.|||||.+....+.+.+. .+.++|+++|+...+.++.+.+.+.
T Consensus 44 g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 44 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 34579999999999998752345799999999999986555444443 2348999999999999998877764
No 42
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.49 E-value=0.00013 Score=69.07 Aligned_cols=51 Identities=25% Similarity=0.258 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHhc-------CCCCeEEEeCCCCCChhHHHHHHHHHHH-HcCCeEEEEc
Q 038763 236 DDSQKKAIALGLN-------KKRPLLIIQGPPGTGKTGLLKEIIARAV-QQGERVLVTA 286 (690)
Q Consensus 236 N~~Q~~Av~~al~-------~~~~~~lI~GPPGTGKT~tl~~~i~~l~-~~g~rVLv~a 286 (690)
++.|++|+..+.. ......+|.|||||||||++..+...+. ..|..++.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 7789998876641 1235789999999999999999888887 5676666544
No 43
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.48 E-value=0.00027 Score=75.37 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..|++.|++|+..++... -.+|.+|+|+|||.+....+...+. .+.++|+++|+...++++.+.+.+.
T Consensus 28 ~~~~~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 28 FEHPSEVQHECIPQAILGM--DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp CCSCCHHHHHHHHHHTTTC--CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCC--cEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 3469999999999988753 4799999999999876665555543 2469999999999999998887764
No 44
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=97.45 E-value=0.00021 Score=76.88 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=56.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|++|+..++... + .+|.+|.|||||.+....+.+.+. .+.++|+++|+...+.++.+.+.+.
T Consensus 60 ~~~~~~~Q~~~i~~~~~~~-~-~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 60 FEKPSAIQQRAILPCIKGY-D-VIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp CCSCCHHHHHHHHHHHTTC-C-EEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHhHHHhCCC-C-EEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 3469999999999988754 3 799999999999986666555544 4678999999999999999888764
No 45
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.45 E-value=0.00021 Score=76.99 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|++|+..++... + .++++|.|||||.+....+.+.+. .+.++|+++||...+.++.+.+.+.
T Consensus 57 ~~~~~~~Q~~ai~~i~~~~-~-~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 57 FEKPSAIQQRAIKQIIKGR-D-VIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp CCSCCHHHHHHHHHHHTTC-C-EEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC-C-EEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 3469999999999988753 3 799999999999887666665543 4679999999999999999988764
No 46
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.42 E-value=0.00034 Score=76.36 Aligned_cols=66 Identities=26% Similarity=0.199 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH-cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~-~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
.|.+.|++++..++.. -.+|.+|+|+|||.+....+..++. .+.++|+++|+...+++..+.+.+.
T Consensus 9 ~l~~~Q~~~i~~~~~~---~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET---NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS---CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC---CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 4899999999999875 3789999999999998888777664 6789999999999999999998875
No 47
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.36 E-value=0.00021 Score=76.22 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
..|++.|++|+..++... -.+|.+|+|||||.+....+.+.+. .+.++|+++|+...++++.+.+.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~~~--~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGH--DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp CSCCHHHHHHHHHHHHTC--CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC--CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 469999999999988753 3789999999999885554444433 4569999999999999998888764
No 48
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.36 E-value=0.00055 Score=76.65 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc-----CCeEEEEcCChHHHHHHHHHHHhc----CC
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-----GERVLVTAPTNAAVDNMVEKLSDV----GL 304 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~-----g~rVLv~a~SN~AvD~l~erL~~~----~~ 304 (690)
.|.+.|.+|+..++... -.+|.+|.|||||.+....+.+.+.. +.++|+++|+...+.+..+.+.+. ++
T Consensus 7 ~~~~~Q~~~i~~~~~~~--~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 7 KARSYQIELAQPAINGK--NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp -CCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHHcCC--CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 58999999999998753 37999999999999887777777664 779999999999999998888764 55
Q ss_pred ceeec
Q 038763 305 NIVRV 309 (690)
Q Consensus 305 ~~vRi 309 (690)
.+..+
T Consensus 85 ~~~~~ 89 (556)
T 4a2p_A 85 SVQGI 89 (556)
T ss_dssp CEEEC
T ss_pred eEEEE
Confidence 55544
No 49
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.36 E-value=0.00058 Score=76.37 Aligned_cols=74 Identities=22% Similarity=0.190 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc-----CCeEEEEcCChHHHHHHHHHHHhc----CC
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-----GERVLVTAPTNAAVDNMVEKLSDV----GL 304 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~-----g~rVLv~a~SN~AvD~l~erL~~~----~~ 304 (690)
.|.+.|.+|+..++... -.+|.+|.|+|||.+....+.+.+.. +.++|+++||...+.+..+.+.+. ++
T Consensus 4 ~~~~~Q~~~i~~~~~~~--~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHhCCC--CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 48999999999998653 37999999999999887777777664 779999999999999988888764 55
Q ss_pred ceeec
Q 038763 305 NIVRV 309 (690)
Q Consensus 305 ~~vRi 309 (690)
.+..+
T Consensus 82 ~~~~~ 86 (555)
T 3tbk_A 82 NIASI 86 (555)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 55544
No 50
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.35 E-value=0.00048 Score=77.65 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcC-------CeEEEEcCChHHHHHHHHHHHh
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG-------ERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g-------~rVLv~a~SN~AvD~l~erL~~ 301 (690)
+..+++.|.+|+..++.....-.++++|.|||||.+..-.+.+.+..+ .++|+++||...+.++.+.+.+
T Consensus 92 ~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp CSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 456999999999999853234579999999999987555444444322 4899999999999999888876
No 51
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.35 E-value=0.00024 Score=80.76 Aligned_cols=72 Identities=24% Similarity=0.206 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHhc---CCCCeEEEeCCCCCChhHHHHHHHHHHHHc---------CCeEEEEcCChHHHHHHH-HHHH
Q 038763 234 TFDDSQKKAIALGLN---KKRPLLIIQGPPGTGKTGLLKEIIARAVQQ---------GERVLVTAPTNAAVDNMV-EKLS 300 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~---~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~---------g~rVLv~a~SN~AvD~l~-erL~ 300 (690)
.|.+.|.+||..++. ....-.++.+|.|||||.++..++..++.. +.+||+++|++..+++.. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 599999999998765 112446889999999999999999888874 489999999999999988 6555
Q ss_pred hcCCc
Q 038763 301 DVGLN 305 (690)
Q Consensus 301 ~~~~~ 305 (690)
..+..
T Consensus 258 ~~~~~ 262 (590)
T 3h1t_A 258 PFGDA 262 (590)
T ss_dssp TTCSS
T ss_pred hcchh
Confidence 55443
No 52
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.34 E-value=0.00036 Score=69.30 Aligned_cols=65 Identities=20% Similarity=0.349 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHH-HHHcCC----eEEEEcCChHHHHHHHHHHHh
Q 038763 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR-AVQQGE----RVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 235 LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~-l~~~g~----rVLv~a~SN~AvD~l~erL~~ 301 (690)
+.+.|.+++..+... ...+|.||.|||||+++...+.. +...+. ++++.+|+...+..+.+++..
T Consensus 62 ~~~~q~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 677899999888764 47899999999999987666554 334443 899999999999999888865
No 53
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.33 E-value=0.00031 Score=77.51 Aligned_cols=70 Identities=23% Similarity=0.214 Sum_probs=54.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcC---CeEEEEcCChHHHHHHHHHHHh
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG---ERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g---~rVLv~a~SN~AvD~l~erL~~ 301 (690)
+..+++.|.+|+..++.....-.+++||.|||||.+....+.+.+..+ .++|+++|+...+.++.+.+.+
T Consensus 112 ~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 184 (479)
T 3fmp_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 184 (479)
T ss_dssp CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHH
Confidence 456899999999999875335689999999999988554444444333 3899999999999999776655
No 54
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.33 E-value=0.00025 Score=82.54 Aligned_cols=69 Identities=22% Similarity=0.366 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHH-HHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLK-EIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~-~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
+..|++.|.+|+..++.. +...+|.||.|||||++.. .++..+...|.++++++|+..++.+..+++..
T Consensus 21 ~~~l~~~Q~~~i~~~~~~-~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 21 IESFYPPQAEALKSGILE-GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp CCBCCHHHHHHHTTTGGG-TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGG
T ss_pred CCCCCHHHHHHHHHHhcC-CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHH
Confidence 346999999999974443 3578999999999999874 44445555788999999999999999999864
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.31 E-value=0.00033 Score=81.64 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHhcC---CC-CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 234 TFDDSQKKAIALGLNK---KR-PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~---~~-~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+|++.|++|+..++.. .. .-.+|+||.|||||.+....+...+..|.++++++||...+.++.+++.+.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 6999999999987653 11 136999999999999988888888888999999999999999998888763
No 56
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.31 E-value=0.00059 Score=73.48 Aligned_cols=70 Identities=26% Similarity=0.268 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHH-HHHHHHHHHcC--------------------CeEEEEcCCh
Q 038763 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLL-KEIIARAVQQG--------------------ERVLVTAPTN 289 (690)
Q Consensus 231 ~~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl-~~~i~~l~~~g--------------------~rVLv~a~SN 289 (690)
.+..+++.|.+|+..++... -.+|++|.|||||.+. ..++..+...+ .++|+++||.
T Consensus 34 ~~~~~~~~Q~~~i~~i~~~~--~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 34 RYTRPTPVQKHAIPIIKEKR--DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp TCCSCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCCCHHHHHHHHHHccCC--CEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 34579999999999888643 4799999999999864 34444444322 5799999999
Q ss_pred HHHHHHHHHHHhc
Q 038763 290 AAVDNMVEKLSDV 302 (690)
Q Consensus 290 ~AvD~l~erL~~~ 302 (690)
..+.++.+.+.+.
T Consensus 112 ~L~~q~~~~~~~~ 124 (417)
T 2i4i_A 112 ELAVQIYEEARKF 124 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 57
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.30 E-value=0.00049 Score=82.62 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+|++.|.+||..++.. .-.+|.||.|+|||.+....+..+...+.++|+++|+...+.+..+++.+.
T Consensus 39 ~l~~~Q~~aI~~il~g--~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQG--DSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCCHHHHHHHHHHHTT--CEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcC--CCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 5899999999988864 368999999999999877788888888999999999999999999999874
No 58
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.28 E-value=0.00063 Score=77.03 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=54.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc-------CCeEEEEcCChHHHHHHHHHHHh
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-------GERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~-------g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
+..+++.|.+|+..++.....-.++++|.|||||.+..-.+.+.+.. +.++||++||...+.++.+.+.+
T Consensus 41 ~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 41 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp CSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 34699999999999985323457999999999998755544444432 24899999999999999888876
No 59
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.27 E-value=0.00054 Score=67.49 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHhcC-CCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 235 FDDSQKKAIALGLNK-KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 235 LN~~Q~~Av~~al~~-~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.|....+++...... .....+|+||||||||+++..+...+...+.++..+..+
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 566666677665543 345789999999999999999999888888887776654
No 60
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.00065 Score=81.63 Aligned_cols=67 Identities=24% Similarity=0.278 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+|++.|.+|+..++.. .-.+|.+|.|+|||.+....+...+..|.++|+++|+...+.+..+.+.+.
T Consensus 86 ~L~~~Q~eai~~l~~g--~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRG--ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCCHHHHHHHHHHHHT--CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC--CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHH
Confidence 4999999999998764 358999999999999887777777888999999999999999999888764
No 61
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.23 E-value=0.00089 Score=72.93 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=56.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHH-HHHHHHHHHc-------CCeEEEEcCChHHHHHHHHHHHhc
Q 038763 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLL-KEIIARAVQQ-------GERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 231 ~~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl-~~~i~~l~~~-------g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
.+..+++.|++|+..++... -.++++|.|||||... .-++..+... +.++|+++||...+.++.+.+.+.
T Consensus 75 g~~~pt~iQ~~ai~~i~~g~--d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 75 GYKIPTPIQKCSIPVISSGR--DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp TCCSCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhcCC--CEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 44579999999999988753 4799999999999864 4455555543 458999999999999999888764
No 62
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.23 E-value=0.0007 Score=69.92 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHH-HHHHHHHHc--CCeEEEEcCChHHHHHHHHHHHhc
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLK-EIIARAVQQ--GERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~-~~i~~l~~~--g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..+++.|.+|+..++.....-.++++|.|||||.... .++..+... +.++|+++||...+.++.+.+...
T Consensus 112 ~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l 185 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (300)
T ss_dssp CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 35689999999999887522347999999999998743 444443332 348999999999999987777654
No 63
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.23 E-value=0.00019 Score=83.40 Aligned_cols=68 Identities=21% Similarity=0.245 Sum_probs=56.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
+..|++.|.+|+...+.. ...+|.||.|||||+.+.-.+...+..+.++++++|+...+.+..+++..
T Consensus 23 ~~~l~~~Q~~~i~~i~~~--~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~ 90 (702)
T 2p6r_A 23 IEELFPPQAEAVEKVFSG--KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKK 90 (702)
T ss_dssp --CCCCCCHHHHHHHTTC--SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCC--CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHH
Confidence 346999999999986653 46899999999999988666666666788999999999999999999843
No 64
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.23 E-value=0.00018 Score=80.18 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc---CCeEEEEcCChHHHHHHHHHHHhc
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ---GERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~---g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
..+++.|.+|+..++.....-.+|++|.|||||.+....+...+.. +.++|+++|++..++++.+++.+.
T Consensus 140 ~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 140 XXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp EECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 3589999999999987522457999999999999866665555443 358999999999999999998875
No 65
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00056 Score=82.94 Aligned_cols=67 Identities=24% Similarity=0.278 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
.|++.|.+|+..++.. .-.+|.||.|||||.+....+...+..|.++|+++|+...+.+..+++.+.
T Consensus 184 ~ltp~Q~~AI~~i~~g--~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~ 250 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDRG--ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAE 250 (1108)
T ss_dssp CCCHHHHHHHHHHTTT--CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC--CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 5999999999987764 347999999999999988888888889999999999999999999999874
No 66
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.08 E-value=0.0012 Score=80.02 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
.+++.|.+|+..++... -.++++|.|||||......+..++..+.++|+++||...+.++.+++.+.
T Consensus 78 ~pt~iQ~~ai~~il~g~--dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGK--SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp CCCHHHHHHHHHHTTTC--CEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCC--CEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 58999999999998753 36999999999999776667777778899999999999999999999884
No 67
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.07 E-value=0.0016 Score=76.76 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc-----CCeEEEEcCChHHHHHHHHHHHhc----C
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-----GERVLVTAPTNAAVDNMVEKLSDV----G 303 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~-----g~rVLv~a~SN~AvD~l~erL~~~----~ 303 (690)
..|.+.|.+|+..++... -.+|.+|.|||||.+....+.+.+.. +.++||++|+...+.+..+.+.+. +
T Consensus 247 ~~l~~~Q~~~i~~~l~~~--~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~ 324 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGK--NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 324 (797)
T ss_dssp -CCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHHhCC--CEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCC
Confidence 469999999999998753 37999999999999887777777664 789999999999999988887764 5
Q ss_pred CceeecC
Q 038763 304 LNIVRVG 310 (690)
Q Consensus 304 ~~~vRiG 310 (690)
+.+..+.
T Consensus 325 ~~v~~~~ 331 (797)
T 4a2q_A 325 YSVQGIS 331 (797)
T ss_dssp CCEEEEC
T ss_pred ceEEEEe
Confidence 6555443
No 68
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.05 E-value=0.00082 Score=66.68 Aligned_cols=53 Identities=23% Similarity=0.415 Sum_probs=43.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGL 304 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~ 304 (690)
..+++|.||||+|||+++..++..+...+.++++.+.... .+.+.+++...+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 4689999999999999999999998888889998876554 5677777765443
No 69
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.012 Score=62.94 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=24.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.|++||||||||.++.+++..+ +..++.+..+
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s 250 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQT---SATFLRIVGS 250 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHH---TCEEEEEESG
T ss_pred CceECCCCchHHHHHHHHHHHh---CCCEEEEEHH
Confidence 6999999999999887777654 4555555443
No 70
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.02 E-value=0.0014 Score=78.57 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCC--eEEEEcCChHHHHHHHHHHHh-cCCce
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGE--RVLVTAPTNAAVDNMVEKLSD-VGLNI 306 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~--rVLv~a~SN~AvD~l~erL~~-~~~~~ 306 (690)
.|.+.|.+|+..++.....-.++.+|.|+|||.++..++..+...|. ++||++|+ ..+.+....+.+ .++++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCE
Confidence 59999999999988765556899999999999999999999988765 99999999 777777777643 44443
No 71
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.01 E-value=0.00061 Score=65.02 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=34.0
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.+.+|.||||+||||++..++..+...|.++++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 4889999999999999999999999899999998776
No 72
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.01 E-value=0.00064 Score=62.46 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
...|.++..++... .....+|.|||||||||++..+...+...|.+++.+...
T Consensus 21 ~g~n~~~~~~l~~~---~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 21 GTENAELVYVLRHK---HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp SCCTHHHHHHCCCC---CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred cCccHHHHHHHHhc---CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 35777777766554 346889999999999999999888877777666665443
No 73
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.00 E-value=0.0015 Score=79.62 Aligned_cols=68 Identities=24% Similarity=0.220 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHhcC---CC-CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 234 TFDDSQKKAIALGLNK---KR-PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~---~~-~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
++++.|.+|+..++.. .. .-.+|+||.|+|||.+....+..++..|.++|+++||...+.+..+++.+
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHH
Confidence 4799999999988752 22 15799999999999988777777778899999999999999999888865
No 74
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.95 E-value=0.0024 Score=73.81 Aligned_cols=75 Identities=19% Similarity=0.144 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcC-----CeEEEEcCChHHHHHHHHHHHhc----C
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG-----ERVLVTAPTNAAVDNMVEKLSDV----G 303 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g-----~rVLv~a~SN~AvD~l~erL~~~----~ 303 (690)
..|.+.|.+|+..++... -++|.+|.|+|||......+.+.+..+ .++|+++||...+.+..+.+.+. +
T Consensus 12 ~~lr~~Q~~~i~~~l~g~--~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~ 89 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGK--NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHG 89 (696)
T ss_dssp -CCCHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCccHHHHHHHHHHHcCC--CEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCC
Confidence 469999999999998753 479999999999998877777665532 68999999999999888887764 4
Q ss_pred Cceeec
Q 038763 304 LNIVRV 309 (690)
Q Consensus 304 ~~~vRi 309 (690)
+.+..+
T Consensus 90 ~~v~~~ 95 (696)
T 2ykg_A 90 YRVTGI 95 (696)
T ss_dssp CCEEEE
T ss_pred ceEEEE
Confidence 554443
No 75
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.92 E-value=0.0012 Score=63.56 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=29.6
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
...+|+||||||||+++..+...+...+.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 46899999999999999988888887777777654
No 76
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.91 E-value=0.00075 Score=66.38 Aligned_cols=40 Identities=28% Similarity=0.212 Sum_probs=35.7
Q ss_pred CCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCCh
Q 038763 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289 (690)
Q Consensus 250 ~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN 289 (690)
...+.+|.||||+||||.+..++..+...|.+|++..|.-
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 4568999999999999999999999999999999996653
No 77
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.88 E-value=0.0017 Score=70.15 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=41.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc-CC--hHHHHHHHHHHHhcCCceee
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA-PT--NAAVDNMVEKLSDVGLNIVR 308 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a-~S--N~AvD~l~erL~~~~~~~vR 308 (690)
.+.++.||||+|||||+..++..+.+.|.+|++++ .+ ..|++.+...-...++++..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~ 160 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG 160 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe
Confidence 47899999999999999999999999998887654 33 34555554443444555543
No 78
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.85 E-value=0.00092 Score=77.38 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcC------CeEEEEcCChHHHHHH-HHHHHhc
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG------ERVLVTAPTNAAVDNM-VEKLSDV 302 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g------~rVLv~a~SN~AvD~l-~erL~~~ 302 (690)
.|.+.|.+|+..++... -.+|.+|.|+|||.+....+.+++..+ .++||++|+...+.+. .+.+.+.
T Consensus 7 ~l~~~Q~~~i~~il~g~--~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGK--NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHHHHHHHHSSC--CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHhCC--CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 58999999999999753 379999999999999888877766532 7999999999999888 8887764
No 79
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.85 E-value=0.00088 Score=75.84 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
.++..|.+|+...+....++.+|.|++|+|||+++-.++.++. .+++|||||..|+..+.+-..+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHHHhhC
Confidence 5899999999988775456899999999999988888887774 3589999999999988876543
No 80
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.85 E-value=0.00088 Score=73.57 Aligned_cols=52 Identities=38% Similarity=0.541 Sum_probs=45.5
Q ss_pred CCeEEEeCCCCCChhHH-HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 251 RPLLIIQGPPGTGKTGL-LKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~t-l~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+..++|.||.|||||.. +..++..+...+.++|+++|+...+.++.+++...
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~ 73 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL 73 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc
Confidence 46789999999999997 67777777778899999999999999999998743
No 81
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.84 E-value=0.0024 Score=60.11 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcC-CCCeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 237 DSQKKAIALGLNK-KRPLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 237 ~~Q~~Av~~al~~-~~~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
+.+.+.+...+.. .....+|+||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445555554443 2356899999999999999888888765
No 82
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.82 E-value=0.002 Score=67.03 Aligned_cols=37 Identities=35% Similarity=0.476 Sum_probs=30.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
...+|+||||||||+++..+...+...+.+++.+..+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3589999999999999998888887777788777543
No 83
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.82 E-value=0.0022 Score=69.37 Aligned_cols=58 Identities=21% Similarity=0.306 Sum_probs=41.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc-CC--hHHHHHHHHHHHhcCCceeec
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA-PT--NAAVDNMVEKLSDVGLNIVRV 309 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a-~S--N~AvD~l~erL~~~~~~~vRi 309 (690)
.+.++.||||+|||||+..++..+...|.+|++++ .+ ..|++.+...-...++.+...
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~ 158 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGE 158 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeec
Confidence 47899999999999999999999999999987654 33 344555443333345554433
No 84
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.73 E-value=0.0021 Score=60.29 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=28.1
Q ss_pred HHHHHHHHhcC-CCCeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 239 QKKAIALGLNK-KRPLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 239 Q~~Av~~al~~-~~~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
+.+.+...+.. .....+|.||||||||+++..++..+..
T Consensus 30 ~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 30 EIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44444444433 2356799999999999999988888765
No 85
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=96.73 E-value=0.0026 Score=76.05 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc-----CCeEEEEcCChHHHHHHHHHHHhc----C
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-----GERVLVTAPTNAAVDNMVEKLSDV----G 303 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~-----g~rVLv~a~SN~AvD~l~erL~~~----~ 303 (690)
..|.+.|.+|+..++... -.+|.+|.|+|||.+....+.+.+.. +.++||++|+...+.+..+.+.+. +
T Consensus 247 ~~~r~~Q~~ai~~il~g~--~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 324 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGK--NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 324 (936)
T ss_dssp -CCCHHHHHHHHHHHTTC--CEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCC--CEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 358999999999998753 37999999999999877777766654 779999999999999988887764 5
Q ss_pred Cceeec
Q 038763 304 LNIVRV 309 (690)
Q Consensus 304 ~~~vRi 309 (690)
+.+..+
T Consensus 325 ~~v~~~ 330 (936)
T 4a2w_A 325 YSVQGI 330 (936)
T ss_dssp CCEEEE
T ss_pred ceEEEE
Confidence 655544
No 86
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00099 Score=69.10 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=23.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
.+..+|.||||||||+++..++..+-.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999988865
No 87
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.66 E-value=0.001 Score=60.65 Aligned_cols=30 Identities=17% Similarity=0.199 Sum_probs=21.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCe
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGER 281 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~r 281 (690)
...+|+||||||||+++..+.......+..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 347999999999999877665544333443
No 88
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.64 E-value=0.0027 Score=62.11 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=40.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVG 303 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~ 303 (690)
..+++|.||||+||||++..++..+...+.+|++.+... ..+.+..++...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~ 74 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE-SRDSIIRQAKQFN 74 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS-CHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc-CHHHHHHHHHHhc
Confidence 468999999999999999999988877788888887654 3455666655433
No 89
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.62 E-value=0.0017 Score=63.56 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=30.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
.++.|+||+||||++..+...+...|.+|+++--
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 6889999999999999999999999999875543
No 90
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.61 E-value=0.00095 Score=64.46 Aligned_cols=34 Identities=32% Similarity=0.585 Sum_probs=26.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH-----HcC-CeEEEEc
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAV-----QQG-ERVLVTA 286 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~-----~~g-~rVLv~a 286 (690)
+.+|+||||||||+.++..+..+. +.| .+|.+|-
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~ 46 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTN 46 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEec
Confidence 789999999999999888776654 456 5555553
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.61 E-value=0.0018 Score=67.06 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=31.4
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHH-HcCCeEEEEcC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAV-QQGERVLVTAP 287 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~-~~g~rVLv~a~ 287 (690)
...+|+||||||||+++..+...+. ..|.+|+++..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 4689999999999999999999998 88888886653
No 92
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.59 E-value=0.0029 Score=73.86 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHH-Hc--CCeEEEEcCChHHHHHHHHHHHh
Q 038763 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV-QQ--GERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 236 N~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~-~~--g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
...|++++..++.. +..++|.||.|||||+.+..++.... .. |.+|++++|+..++..+.+++..
T Consensus 95 ~~~q~~~i~~~l~~-~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 95 VHAQRDEFLKLYQN-NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGGGHHHHHHHHHH-CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 44688888888875 36789999999999996655543322 12 66899999999999999888855
No 93
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.58 E-value=0.002 Score=61.80 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=34.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.+.++.||+|+||||.+..++..+...|.+|++..|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 4899999999999999999999999999999999876
No 94
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=96.55 E-value=0.003 Score=76.45 Aligned_cols=65 Identities=25% Similarity=0.206 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 235 LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+ +-|.+|+..++... -.+++||.|||||....-++..+...+.++|+++||...+.++.+.+.+.
T Consensus 58 p-~iQ~~ai~~il~g~--dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKE--SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp C-HHHHHHHHHHHTTC--CEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCC--CEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 7 99999999998753 47999999999998666667777778899999999999999998888763
No 95
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.54 E-value=0.0029 Score=65.73 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
..+++|.|+||+|||+++..++..+..+|.+|++.+.- ...+.+..|+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHH
Confidence 57999999999999999999999988888899998876 556777788764
No 96
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.52 E-value=0.0052 Score=59.18 Aligned_cols=44 Identities=27% Similarity=0.434 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHhcCC-CCeEEEeCCCCCChhHHHHHHHHHHHHcC
Q 038763 236 DDSQKKAIALGLNKK-RPLLIIQGPPGTGKTGLLKEIIARAVQQG 279 (690)
Q Consensus 236 N~~Q~~Av~~al~~~-~~~~lI~GPPGTGKT~tl~~~i~~l~~~g 279 (690)
.+...+.+...+... .+..+|+||||||||+++..+...+...+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 345566666665543 23489999999999999988888776543
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.50 E-value=0.0017 Score=62.47 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+|.||||||||+++..++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999998888776
No 98
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.49 E-value=0.0049 Score=63.65 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=40.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc-C--ChHHHHHHHHHHHhcCCcee
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA-P--TNAAVDNMVEKLSDVGLNIV 307 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a-~--SN~AvD~l~erL~~~~~~~v 307 (690)
.+.+|.||+|+|||||+..++..+...|.+|++.+ . ...+++++..-+...++.++
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~ 163 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI 163 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEE
Confidence 47889999999999999999999888888887754 2 33455555444444455554
No 99
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=96.46 E-value=0.0056 Score=69.28 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCceeecC
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRiG 310 (690)
..+.+.|.+||..++... + +++.+|.|+|||.+.. +-.+ ..+.++||++|+...+.+..+.|.+.|+.+.-+.
T Consensus 43 ~~~rp~Q~~~i~~il~g~-d-~lv~~pTGsGKTl~~~--lpal-~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~ 115 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGK-E-VFLVMPTGGGKSLCYQ--LPAL-CSDGFTLVICPLISLMEDQLMVLKQLGISATMLN 115 (591)
T ss_dssp CSCCTTHHHHHHHHHTTC-C-EEEECCTTSCTTHHHH--HHHH-TSSSEEEEECSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred CCCCHHHHHHHHHHHcCC-C-EEEEECCCChHHHHHH--HHHH-HcCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 458899999999998753 3 7999999999997532 2222 2456999999999999999999998877665443
No 100
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.44 E-value=0.0027 Score=62.04 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHhcCCC--CeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 236 DDSQKKAIALGLNKKR--PLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 236 N~~Q~~Av~~al~~~~--~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
.+.+.+.+..++.... ...+|+||||||||+++..+...+..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455566666555432 37899999999999999888776654
No 101
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.41 E-value=0.0042 Score=65.84 Aligned_cols=43 Identities=23% Similarity=0.368 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHh-----cCCCCeEEEeCCCCCChhHHHHHHHHHHHHc
Q 038763 236 DDSQKKAIALGL-----NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ 278 (690)
Q Consensus 236 N~~Q~~Av~~al-----~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~ 278 (690)
.+.+.+.+...+ .......+|+||||||||+++..+...+...
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445566665554 2234568999999999999999888877553
No 102
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.41 E-value=0.0054 Score=61.35 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=23.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
.-.+|+||||||||+++..+...+ +.+++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~ 72 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAG 72 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEET
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEech
Confidence 347999999999999888776654 444444433
No 103
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.41 E-value=0.0054 Score=63.12 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=27.4
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCC----eEEEEcC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE----RVLVTAP 287 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~----rVLv~a~ 287 (690)
...+|+||||||||+++..+...+...+. .++.+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 35899999999999999888887766432 5555543
No 104
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=96.40 E-value=0.0042 Score=69.28 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCceeec
Q 038763 233 KTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRV 309 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRi 309 (690)
..+.+.|.+|+..++... -.+|.+|.|+|||.+. .+-.+. .+.++||++|+...+.+..+++.+.++.+.-+
T Consensus 24 ~~~r~~Q~~~i~~il~g~--d~lv~apTGsGKTl~~--~lp~l~-~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l 95 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGR--DCLVVMPTGGGKSLCY--QIPALL-LNGLTVVVSPLISLMKDQVDQLQANGVAAACL 95 (523)
T ss_dssp SSCCTTHHHHHHHHHTTC--CEEEECSCHHHHHHHH--HHHHHH-SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHcCC--CEEEECCCCcHHHHHH--HHHHHH-hCCCEEEECChHHHHHHHHHHHHHcCCcEEEE
Confidence 358889999999998753 3788999999999643 233333 35689999999999999999999887765544
No 105
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.40 E-value=0.0035 Score=68.59 Aligned_cols=60 Identities=32% Similarity=0.389 Sum_probs=49.9
Q ss_pred HHHHHhcCCCCeEEEeCCCCCChhHH-HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 242 AIALGLNKKRPLLIIQGPPGTGKTGL-LKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 242 Av~~al~~~~~~~lI~GPPGTGKT~t-l~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
++..++.. .++.++.||.|||||.. +..++..+...+.++|+++||...++++.+.+...
T Consensus 11 ~i~~~l~~-~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 11 VDEDIFRK-KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCGGGGST-TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HHHHHHhc-CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc
Confidence 34455654 46889999999999995 77778788888899999999999999999998643
No 106
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.39 E-value=0.0039 Score=63.96 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
...+++||||||||+++..+...+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999988777665
No 107
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.39 E-value=0.0032 Score=68.47 Aligned_cols=50 Identities=30% Similarity=0.495 Sum_probs=43.6
Q ss_pred CeEEEeCCCCCChhHHH-HHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 252 PLLIIQGPPGTGKTGLL-KEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl-~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
...+|+||.|||||.+. ..++..++..|.++|+++||...++++.+.+..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~ 53 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG 53 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC
Confidence 46899999999999985 666767788889999999999999999988864
No 108
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=96.38 E-value=0.0051 Score=57.65 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHhcCCCCeEEEeCCCCCChhHH-HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHH
Q 038763 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGL-LKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300 (690)
Q Consensus 236 N~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~t-l~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~ 300 (690)
+..|..|+...+.+..++.+|+|+-||+||++ +.+++...-..|.+|-++||++.+...+.+...
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~ 101 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDER 101 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcC
Confidence 46799999998887788999999999999998 555555556689999999999999999988754
No 109
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.34 E-value=0.0088 Score=75.52 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH--cCCeEEEEcCChHHHHHHHHHHHh
Q 038763 231 MGKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ--QGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 231 ~~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~--~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
.+..+|+-|.+|+...+..+ .-.+|.+|.|||||.+.--.|.+.+. .+.++++++|+.+.+.+..+.+.+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~-~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSD-DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCC-SCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCC-CcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHH
Confidence 35679999999999888764 45799999999999976555554443 367999999999999998777654
No 110
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.33 E-value=0.0031 Score=62.54 Aligned_cols=52 Identities=19% Similarity=0.390 Sum_probs=41.1
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHH-HcCCeEEEEcCChHHHHHHHHHHHhcC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAV-QQGERVLVTAPTNAAVDNMVEKLSDVG 303 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~-~~g~rVLv~a~SN~AvD~l~erL~~~~ 303 (690)
..+++|.|+||+|||+++..++...+ ..+.++++++.... .+.+.+++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHcC
Confidence 46999999999999999999887754 45788998887644 567777776644
No 111
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.28 E-value=0.0095 Score=75.23 Aligned_cols=69 Identities=25% Similarity=0.363 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH-----------cCCeEEEEcCChHHHHHHHHHHH
Q 038763 232 GKTFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-----------QGERVLVTAPTNAAVDNMVEKLS 300 (690)
Q Consensus 232 ~~~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~-----------~g~rVLv~a~SN~AvD~l~erL~ 300 (690)
+..||+-|.+++..++..+ .-.+|..|-|+|||.+..-.|.+.+. .+.++++++|+.+-+.+..+.+.
T Consensus 77 ~~~ln~iQs~~~~~al~~~-~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 77 FKTLNRIQSKLYRAALETD-ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp CSBCCHHHHHTHHHHHTCC-CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCC-CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 4579999999999999865 34799999999999986555554443 25689999999999988877665
Q ss_pred h
Q 038763 301 D 301 (690)
Q Consensus 301 ~ 301 (690)
+
T Consensus 156 ~ 156 (1724)
T 4f92_B 156 K 156 (1724)
T ss_dssp H
T ss_pred H
Confidence 4
No 112
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.27 E-value=0.0049 Score=64.00 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHhcCCC--CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHH
Q 038763 235 FDDSQKKAIALGLNKKR--PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299 (690)
Q Consensus 235 LN~~Q~~Av~~al~~~~--~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL 299 (690)
-++...+.+..++.... .+.++.||||||||+++..+...+ +..++-+..++..++.+.+.+
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~~~i~~~~ 93 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKIDFVRGPL 93 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCHHHHHTHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCHHHHHHHH
Confidence 45667777777766432 467888989999999988876654 567777666665555555444
No 113
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.27 E-value=0.0041 Score=67.78 Aligned_cols=53 Identities=28% Similarity=0.443 Sum_probs=44.9
Q ss_pred CeEEEeCCCCCChhHHH-HHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCC
Q 038763 252 PLLIIQGPPGTGKTGLL-KEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGL 304 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl-~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~ 304 (690)
.-.+|+||.|||||.+. ..++..+...+.++|+++||...+.++.+.+...++
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v 62 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDV 62 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCE
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCe
Confidence 46899999999999984 556666777788999999999999999999976543
No 114
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.26 E-value=0.0025 Score=73.17 Aligned_cols=64 Identities=36% Similarity=0.502 Sum_probs=48.7
Q ss_pred HHHHHHhc----CCCCeEEEeCCCCCChhHH-HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCC
Q 038763 241 KAIALGLN----KKRPLLIIQGPPGTGKTGL-LKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGL 304 (690)
Q Consensus 241 ~Av~~al~----~~~~~~lI~GPPGTGKT~t-l~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~ 304 (690)
+||..++. ..+...+|+||.|||||.. +..++..+...+.++|+++||...+.++.+.+...++
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~i 295 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLPV 295 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCCe
Confidence 77765551 1234689999999999998 5666767777888999999999999999999987644
No 115
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.26 E-value=0.0048 Score=57.73 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=33.6
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAA 291 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~A 291 (690)
++..|.||+|+||||++..++..+...|.+|.++......
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 5789999999999999999999998889888887766543
No 116
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.25 E-value=0.0039 Score=63.41 Aligned_cols=31 Identities=32% Similarity=0.554 Sum_probs=22.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.-.+|+||||||||+++..+...+ +.+++.+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v 82 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET---NATFIRV 82 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT---TCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEE
Confidence 458999999999999887776543 4444443
No 117
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.24 E-value=0.0085 Score=68.18 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=53.9
Q ss_pred CHHHHHHHH---HHhcCCCCeEEEeCCCCCChhHH-HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc----CCcee
Q 038763 236 DDSQKKAIA---LGLNKKRPLLIIQGPPGTGKTGL-LKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV----GLNIV 307 (690)
Q Consensus 236 N~~Q~~Av~---~al~~~~~~~lI~GPPGTGKT~t-l~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~----~~~~v 307 (690)
-+.|++.+. .++... ...+++.|.|||||.. +.-++..+...+.+|+++++|+.-++.+.+-+... +++++
T Consensus 5 R~~Q~~~~~~v~~~l~~~-~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~ 83 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKS-YGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAI 83 (620)
T ss_dssp CHHHHHHHHHHHHHHHHS-SEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred CHHHHHHHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccCeEEE
Confidence 467877765 445443 5689999999999975 45556666667899999999999998887766542 34444
Q ss_pred ecCC
Q 038763 308 RVGN 311 (690)
Q Consensus 308 RiG~ 311 (690)
-+..
T Consensus 84 ~l~g 87 (620)
T 4a15_A 84 PMQG 87 (620)
T ss_dssp ECCC
T ss_pred EEEC
Confidence 4443
No 118
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.20 E-value=0.0078 Score=63.83 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=27.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHc--------CCeEEEEc
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQ--------GERVLVTA 286 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~--------g~rVLv~a 286 (690)
...+|+||||||||+++..+...+... +..++.+.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 478999999999999998888877654 65665543
No 119
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.20 E-value=0.0037 Score=65.85 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=38.8
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKL 299 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL 299 (690)
..+++|.||||+||||++..++..+...+.+|++++.-+..-....+++
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHc
Confidence 4689999999999999999999998888888888876654433444444
No 120
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.18 E-value=0.006 Score=63.78 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=42.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
..+.+|.|+||+|||+++..++..+...|.+|++.+.- ...+++..|+..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE-ms~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE-MSAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHH
Confidence 57999999999999999999999988899999999875 445677777754
No 121
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.17 E-value=0.011 Score=66.16 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=52.9
Q ss_pred CCCHHHHHHHH---HHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCceeecC
Q 038763 234 TFDDSQKKAIA---LGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVG 310 (690)
Q Consensus 234 ~LN~~Q~~Av~---~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRiG 310 (690)
++-+.|.+++. .++.. +...+|+.|.|||||.. .++-. +..+.+|++++||+..++++.+.+...+++++-+.
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~-~~~~~~~a~TGtGKT~~--~l~~~-~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKH-GKTLLLNAKPGLGKTVF--VEVLG-MQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp --CCHHHHHHHHHHHHHHT-TCEEEEECCTTSCHHHH--HHHHH-HHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHc-CCCEEEEcCCCCcHHHH--HHHHH-HhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 36678888764 34444 35789999999999954 33332 34578999999999999999998888776666554
Q ss_pred C
Q 038763 311 N 311 (690)
Q Consensus 311 ~ 311 (690)
.
T Consensus 83 g 83 (540)
T 2vl7_A 83 G 83 (540)
T ss_dssp -
T ss_pred C
Confidence 4
No 122
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0025 Score=68.91 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=24.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.|++||||||||.++.+++..+ +..++.+..+
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s 249 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQT---NATFLKLAAP 249 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred eEEECcCCCCHHHHHHHHHHHh---CCCEEEEehh
Confidence 6999999999999987776653 5566666544
No 123
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.15 E-value=0.0082 Score=65.36 Aligned_cols=37 Identities=38% Similarity=0.406 Sum_probs=29.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHc--CCeEEEEcCC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPT 288 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~--g~rVLv~a~S 288 (690)
+..+|+|||||||||++..+...+... +.+++.+..+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 358999999999999998888877665 6677766543
No 124
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.14 E-value=0.0075 Score=62.79 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=23.5
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.-.+++||||||||+++..+...+ .+..++.+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i 77 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSI 77 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEE
T ss_pred ceEEEECCCCccHHHHHHHHHHHc--CCCcEEEE
Confidence 357999999999999988777765 24444433
No 125
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.13 E-value=0.0096 Score=65.63 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=41.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC---ChHHHHHHHHHHHhcCCceee
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP---TNAAVDNMVEKLSDVGLNIVR 308 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~---SN~AvD~l~erL~~~~~~~vR 308 (690)
+.+|.|+||+||||++..++..+.+.|.+|++++. ...|++.+...-...++.++.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~ 161 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYG 161 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEc
Confidence 57788999999999999999999988988887765 456666654433334555544
No 126
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.12 E-value=0.004 Score=63.76 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=20.0
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
...+|+||||||||+++..+...+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 468999999999999887776654
No 127
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.12 E-value=0.0098 Score=61.11 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=41.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC---hHHHHHHHHHHHhcCCceee
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT---NAAVDNMVEKLSDVGLNIVR 308 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S---N~AvD~l~erL~~~~~~~vR 308 (690)
+.++.||+|+||||++..++..+...|.+|+++..- +.|.+.+.......++.++.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~ 158 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYG 158 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEe
Confidence 677889999999999999999998889898877543 45555554333334555543
No 128
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.11 E-value=0.0042 Score=65.47 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=35.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~ 290 (690)
..+++|.|||||||||++..++..+...|.++++.+..+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 4689999999999999999999999888889988876653
No 129
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.08 E-value=0.0086 Score=63.53 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=31.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEEc-CChHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTA-PTNAAVDNMVEKL 299 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~a-~SN~AvD~l~erL 299 (690)
..+|.||||||||+++..+...+... +..++.+. ........+...+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 78999999999999998888776555 45555443 3333333444443
No 130
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.08 E-value=0.005 Score=61.96 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=25.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCCh
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN 289 (690)
...+|+||||||||+++..+...+...+.+++.+..+.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 45799999999999887766655444444555544333
No 131
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.07 E-value=0.0048 Score=65.11 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=35.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~ 290 (690)
..+++|.||||+|||+++..++..+...|.++++++..+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4689999999999999999999999988889988877543
No 132
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.0028 Score=68.33 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=24.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.|++||||||||+++.+++..+ +..++.+..+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~ 240 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANST---KAAFIRVNGS 240 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCeEEEecc
Confidence 6999999999999988877664 5566655544
No 133
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.07 E-value=0.0027 Score=65.24 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=24.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
..+++||||||||+++..+...+ |.+++.+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 57899999999999988877766 55555554
No 134
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.06 E-value=0.0025 Score=57.92 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=17.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
...+|+||||||||+++..+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 3478999999999987655543
No 135
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.06 E-value=0.0042 Score=63.85 Aligned_cols=40 Identities=20% Similarity=0.254 Sum_probs=33.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHc--CCeEEEEcCChHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAA 291 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~--g~rVLv~a~SN~A 291 (690)
++++|.||||||||+++..++..+.+. |.+++.+..-+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 389999999999999999999988876 7788887765544
No 136
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.06 E-value=0.0064 Score=65.58 Aligned_cols=52 Identities=13% Similarity=0.311 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 235 LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+.+.+..++..++..+..+.+|.||.|+|||||+..++..+-....+|++.-
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e 202 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE 202 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence 6777888888776655678999999999999999988876644445676654
No 137
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.03 E-value=0.0044 Score=63.80 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=26.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
..+++||||||||+++..+...+...+..++.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 5899999999999998887777665555555443
No 138
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.0031 Score=67.20 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=24.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.|++||||||||.++.+++..+ +..++.+..+
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s 216 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHT---DCKFIRVSGA 216 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred eEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhH
Confidence 6899999999999988777653 5566655543
No 139
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.00 E-value=0.007 Score=62.96 Aligned_cols=30 Identities=33% Similarity=0.597 Sum_probs=22.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
-.+++||||||||+++..+...+ +..++.+
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~---~~~~~~v 82 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA---NSTFFSV 82 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH---TCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHH---CCCEEEE
Confidence 47999999999999887776553 4455444
No 140
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0033 Score=68.00 Aligned_cols=32 Identities=38% Similarity=0.705 Sum_probs=24.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.|++||||||||+++.+++..+ |..++.+..+
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s 249 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATI---GANFIFSPAS 249 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred EEEECCCCCcHHHHHHHHHHHh---CCCEEEEehh
Confidence 6899999999999988877654 5566655543
No 141
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.98 E-value=0.0061 Score=62.79 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=19.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
...+|+||||||||+++..+...+
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 458999999999999987776654
No 142
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.96 E-value=0.014 Score=64.43 Aligned_cols=68 Identities=21% Similarity=0.175 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHh---cCCCCeEEEeCCCCCChhHHHHHHHHHHHHcC--CeEEEEcCChHHHHHHHHHHHhc
Q 038763 233 KTFDDSQKKAIALGL---NKKRPLLIIQGPPGTGKTGLLKEIIARAVQQG--ERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al---~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g--~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
..|.+.|++||...+ .... -.++.-|.|+|||.++..++..+...+ .++||++|+. .+++..+.+.+.
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~-~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGF-GICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTC-CEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCC-CEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHH
Confidence 359999999997653 2222 368889999999999998888887654 6899999965 668887777765
No 143
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.96 E-value=0.0054 Score=64.97 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=36.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD 293 (690)
..+++|.||||+|||+++..++..+...|.+|++++.-...-.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDP 116 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhH
Confidence 4689999999999999999999999888889998887664333
No 144
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.94 E-value=0.0092 Score=66.39 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=27.3
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCCh
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN 289 (690)
...+|+||||||||+++..+...+ |..++.+..+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~ 112 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASD 112 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCC
Confidence 578999999999999988887766 66666554443
No 145
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.90 E-value=0.013 Score=63.50 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=42.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEEcC---ChHHHHHHHHHHHhcCCceeecC
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAP---TNAAVDNMVEKLSDVGLNIVRVG 310 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~a~---SN~AvD~l~erL~~~~~~~vRiG 310 (690)
+.+|.|++|+|||||++.++..+... |++|++++. ...|++.+...-...+++++-.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~ 163 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSD 163 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCC
Confidence 66778999999999999999999998 999987643 34566665433333466665443
No 146
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.85 E-value=0.0075 Score=65.67 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=43.7
Q ss_pred HhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 246 al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
.+. .+.+++|.|+||+|||+++..++..+...|.+|++.+.-. ..+.+..|+..
T Consensus 193 Gl~-~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~ 246 (444)
T 3bgw_A 193 GYK-RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIV 246 (444)
T ss_dssp SBC-SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHH
T ss_pred CCC-CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHH
Confidence 344 3579999999999999999999999988899999998764 44566677654
No 147
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.85 E-value=0.0074 Score=63.22 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHhcCCC-CeEEEeCCCCCChhHHHHHHHHHHHHc
Q 038763 236 DDSQKKAIALGLNKKR-PLLIIQGPPGTGKTGLLKEIIARAVQQ 278 (690)
Q Consensus 236 N~~Q~~Av~~al~~~~-~~~lI~GPPGTGKT~tl~~~i~~l~~~ 278 (690)
++...+.+...+.... +..+++|||||||||++..+...+...
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4555666666666432 238999999999999998888877543
No 148
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=95.85 E-value=0.024 Score=63.54 Aligned_cols=64 Identities=23% Similarity=0.314 Sum_probs=47.5
Q ss_pred CCHHHHHHHH---HHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 235 FDDSQKKAIA---LGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 235 LN~~Q~~Av~---~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
+-+.|.+++. .++... ...+|+.|.|||||.... +-.+. .+.+|++++||+.-++.+.+.+...
T Consensus 4 ~r~~Q~~~~~~v~~~l~~~-~~~~~~a~TGtGKT~~~l--~p~l~-~~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 4 LRDWQEKLKDKVIEGLRNN-FLVALNAPTGSGKTLFSL--LVSLE-VKPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp CCHHHHHHHHHHHHHHHTT-CEEEEECCTTSSHHHHHH--HHHHH-HCSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcC-CcEEEECCCCccHHHHHH--HHHHh-CCCeEEEEcCCHHHHHHHHHHHHHH
Confidence 5678988554 455543 568999999999976432 22222 6789999999999999998877654
No 149
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=95.83 E-value=0.0096 Score=71.39 Aligned_cols=70 Identities=16% Similarity=0.006 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHhcC------------CCCeEEEeCCCCCChhHHHHHHHHHHHHc--CCeEEEEcCChHHHHHHHHHH
Q 038763 234 TFDDSQKKAIALGLNK------------KRPLLIIQGPPGTGKTGLLKEIIARAVQQ--GERVLVTAPTNAAVDNMVEKL 299 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~------------~~~~~lI~GPPGTGKT~tl~~~i~~l~~~--g~rVLv~a~SN~AvD~l~erL 299 (690)
.+.+.|..||..++.. ...-.+|+.|.|||||.++..++..+... ..+||+++|++.-++++.+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 4899999999987751 01236899999999999987776433322 369999999999999998888
Q ss_pred HhcC
Q 038763 300 SDVG 303 (690)
Q Consensus 300 ~~~~ 303 (690)
...+
T Consensus 351 ~~f~ 354 (1038)
T 2w00_A 351 QRFS 354 (1038)
T ss_dssp HTTS
T ss_pred HHhc
Confidence 7653
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.81 E-value=0.0075 Score=61.98 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=31.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHH-cCCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~-~g~rVLv~a 286 (690)
..+.+|.||+|+|||||+..+...+.. .|++|++++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 458899999999999999999998885 788888765
No 151
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.81 E-value=0.0074 Score=62.87 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=40.0
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc------CCeEEEEcCChH-HHHHHHHHHHhcCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ------GERVLVTAPTNA-AVDNMVEKLSDVGL 304 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~------g~rVLv~a~SN~-AvD~l~erL~~~~~ 304 (690)
..+++|.||||||||+++..++.....+ +.++++.+..+. -.+.+.+++...++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4699999999999999999998876554 678888776653 24556555554443
No 152
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.78 E-value=0.0053 Score=66.53 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=40.5
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC---ChHHHHHHHHHHHhcCCceeec
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP---TNAAVDNMVEKLSDVGLNIVRV 309 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~---SN~AvD~l~erL~~~~~~~vRi 309 (690)
.+.+|.||||+||||++..++..+...|.+|++++. ...|++.+.......++.++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~ 160 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGD 160 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEec
Confidence 368899999999999999999999988999887753 2344444333222334544443
No 153
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.75 E-value=0.01 Score=57.59 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=34.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
..+.++.||.|+||||.+..++..+...|.+|++..|.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~ 65 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC 65 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 34889999999999999999999999999999999875
No 154
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.74 E-value=0.013 Score=59.92 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=37.2
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEEcCChHHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLS 300 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~a~SN~AvD~l~erL~ 300 (690)
..+++|.||||+||||++..++..+... |.+|++.+.... ...+..++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~ 84 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 84 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHH
Confidence 5799999999999999999988887765 778988766542 334555543
No 155
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.74 E-value=0.013 Score=56.71 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=32.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCCh-HHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN-AAVDNMVEK 298 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN-~AvD~l~er 298 (690)
..+++|.||||+||||++..++. ..+.++++++... .....+.+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~ 65 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQM 65 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHH
Confidence 46899999999999999988887 5677777776543 223444443
No 156
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.73 E-value=0.0066 Score=61.36 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=19.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
...+|+||||||||+++..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999998877765
No 157
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.72 E-value=0.0091 Score=67.87 Aligned_cols=59 Identities=31% Similarity=0.411 Sum_probs=48.1
Q ss_pred HHHHHhcCCCCeEEEeCCCCCChhHH-HHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 242 AIALGLNKKRPLLIIQGPPGTGKTGL-LKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 242 Av~~al~~~~~~~lI~GPPGTGKT~t-l~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
++..++. +...++++|.|||||.. +..++..+...+.++|+++||...++++.+.+...
T Consensus 179 ~i~~l~~--g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~ 238 (618)
T 2whx_A 179 DEDIFRK--KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL 238 (618)
T ss_dssp CGGGGST--TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC
Confidence 3444443 34689999999999997 57777777788889999999999999999998654
No 158
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.0047 Score=66.78 Aligned_cols=33 Identities=27% Similarity=0.489 Sum_probs=24.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
=.|++||||||||+++.+++..+ +..++.+..+
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s 277 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRT---DATFIRVIGS 277 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred ceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhH
Confidence 36999999999999887776654 4556555443
No 159
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.70 E-value=0.014 Score=63.56 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=25.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.-.+++||||||||+++..+...+ .+..++.+..+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~ 202 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS 202 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence 357999999999999988777664 34455544443
No 160
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.67 E-value=0.01 Score=56.63 Aligned_cols=58 Identities=28% Similarity=0.330 Sum_probs=46.6
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChH----HHHHHHHHHHhcCCceeecCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA----AVDNMVEKLSDVGLNIVRVGN 311 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~----AvD~l~erL~~~~~~~vRiG~ 311 (690)
.+..+|++++|+||||.+..++..++..|.||+++-+-.. .=.+++++| ++.+.+.|.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L---~v~~~~~g~ 89 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH---GVEFQVMAT 89 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG---TCEEEECCT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC---CcEEEEccc
Confidence 4688999999999999999999999999999999976542 223455555 377778776
No 161
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.67 E-value=0.012 Score=62.08 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=32.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
.....|.|+||+||||++..++..+...|.+|+++..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 3578999999999999999999999889999888764
No 162
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.66 E-value=0.013 Score=59.44 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=34.8
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc----------CCeEEEEcCChHHHHHHHHHHHh
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ----------GERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~----------g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
..+++|.||||+||||++..++..+... +.+|++++.-+.. +.+..++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~ 89 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHA 89 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHH
Confidence 5699999999999999999888755432 3567666554432 555555543
No 163
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.0065 Score=63.63 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCC-CCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCC
Q 038763 238 SQKKAIALGLNKK-RPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPT 288 (690)
Q Consensus 238 ~Q~~Av~~al~~~-~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~S 288 (690)
...+.+..++... .+..+|+||||||||+++..+...+.. ....+.-+.++
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 3455666666543 134899999999999999888877653 23455544443
No 164
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.64 E-value=0.014 Score=63.72 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=42.3
Q ss_pred HhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH-cCCeEEEEcCChHHHHHHHHHHH
Q 038763 246 GLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLS 300 (690)
Q Consensus 246 al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~-~g~rVLv~a~SN~AvD~l~erL~ 300 (690)
.+. .+.+++|.||||+|||+++..++..+.. .|.+|++.+.-.. ...+..|+.
T Consensus 199 Gl~-~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~~ 252 (454)
T 2r6a_A 199 GFQ-RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRML 252 (454)
T ss_dssp SBC-TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHHH
T ss_pred CCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHH
Confidence 344 3579999999999999999999998876 5789999987654 367777764
No 165
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.63 E-value=0.011 Score=62.30 Aligned_cols=49 Identities=27% Similarity=0.328 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcC-----CCCeEEEeCCCCCChhHHHHHHHHHHHHc---CCeEEEE
Q 038763 237 DSQKKAIALGLNK-----KRPLLIIQGPPGTGKTGLLKEIIARAVQQ---GERVLVT 285 (690)
Q Consensus 237 ~~Q~~Av~~al~~-----~~~~~lI~GPPGTGKT~tl~~~i~~l~~~---g~rVLv~ 285 (690)
+.+.+.+...+.. .....+|.||||||||+++..++..+... +..++.+
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4455556555441 23578999999999999999888877654 5555444
No 166
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.63 E-value=0.0099 Score=61.77 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=31.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
.+.+|.||+|+|||||+..++..+...|.+|++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47889999999999999999999888888988774
No 167
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.62 E-value=0.0094 Score=62.64 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=40.0
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHH------cCCeEEEEcCChH-HHHHHHHHHHhcCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQ------QGERVLVTAPTNA-AVDNMVEKLSDVGL 304 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~------~g~rVLv~a~SN~-AvD~l~erL~~~~~ 304 (690)
..+++|.||||||||+++..++..... .+.++++++..+. ..+.+.+++...++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~ 182 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV 182 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 468999999999999999998887544 3678888777664 35566666655443
No 168
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.59 E-value=0.011 Score=60.83 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=25.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
.+.+|.||||||||+++..++.. .|.+++.++.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 46799999999999999988776 4555544433
No 169
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.59 E-value=0.011 Score=60.91 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHhcCC-CCeEEEeCCCCCChhHHHHHHHHHHHHc
Q 038763 236 DDSQKKAIALGLNKK-RPLLIIQGPPGTGKTGLLKEIIARAVQQ 278 (690)
Q Consensus 236 N~~Q~~Av~~al~~~-~~~~lI~GPPGTGKT~tl~~~i~~l~~~ 278 (690)
.+...+.+...+... .+..+++||||||||+++..+...+...
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 455666666665543 2358999999999999998888876543
No 170
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.57 E-value=0.015 Score=58.33 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHH-HHhcCC---CCeEEEeCCCCCChhHHHHHHHHH
Q 038763 233 KTFDDSQKKAIA-LGLNKK---RPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 233 ~~LN~~Q~~Av~-~al~~~---~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
.+.|+.+-...- .-+... ....+++||||||||+++..++..
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 358888865543 334332 236899999999999999877765
No 171
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.56 E-value=0.0043 Score=62.47 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=18.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+|+||||||||+++..+...+
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6899999999999988776654
No 172
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.55 E-value=0.012 Score=55.84 Aligned_cols=33 Identities=18% Similarity=0.475 Sum_probs=26.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+.+|.|||||||||++..+...+-..|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 468999999999999998888877778777644
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.50 E-value=0.015 Score=63.32 Aligned_cols=42 Identities=33% Similarity=0.461 Sum_probs=27.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMV 296 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~ 296 (690)
+..+|+||||||||+++..+...+ +....-+..++..++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVKEIR 92 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHHHHH
Confidence 358999999999999887666553 344444444444444443
No 174
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.49 E-value=0.02 Score=59.18 Aligned_cols=47 Identities=32% Similarity=0.502 Sum_probs=29.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE-cCChHHHHHHHHHHHh
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT-APTNAAVDNMVEKLSD 301 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~-a~SN~AvD~l~erL~~ 301 (690)
...+|+||||||||+++..+...+ +.++..+ ++.-....++...+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~~~l~~ 86 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLAAILAN 86 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHHHHHHH
Confidence 457999999999999988877655 3444433 3333334455555443
No 175
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.48 E-value=0.011 Score=55.81 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=27.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+.+|.|||||||||++..+...+-..|..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 578999999999999988888776666666666
No 176
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.45 E-value=0.0094 Score=62.33 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=20.0
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+..++.|||||||||++..+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999887776654
No 177
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.45 E-value=0.012 Score=60.58 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHhcCCC-CeEEEeCCCCCChhHHHHHHHHHHHHc
Q 038763 236 DDSQKKAIALGLNKKR-PLLIIQGPPGTGKTGLLKEIIARAVQQ 278 (690)
Q Consensus 236 N~~Q~~Av~~al~~~~-~~~lI~GPPGTGKT~tl~~~i~~l~~~ 278 (690)
++...+.+...+.... +..+++||||||||+++..+...+...
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 65 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCC
Confidence 4555666666554432 348999999999999998888877543
No 178
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.45 E-value=0.023 Score=56.09 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=34.1
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHH-HcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAV-QQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~-~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
..++.|.||+|+||||++..++.... ..+..+++...... ...+.++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC-HHHHHHHHHH
Confidence 57999999999999999988886555 56666655544332 3444444443
No 179
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=95.44 E-value=0.013 Score=67.20 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=40.2
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCce
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNI 306 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~~ 306 (690)
+...++.||+|||||+.+. ..+... .+.++++|+..++.++.+++.+.|+.+
T Consensus 155 rk~vlv~apTGSGKT~~al---~~l~~~-~~gl~l~PtR~LA~Qi~~~l~~~g~~v 206 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAI---QKYFSA-KSGVYCGPLKLLAHEIFEKSNAAGVPC 206 (677)
T ss_dssp CEEEEEECCTTSSHHHHHH---HHHHHS-SSEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHH---HHHHhc-CCeEEEeCHHHHHHHHHHHHHhcCCcE
Confidence 3478999999999999333 233333 456999999999999999998876643
No 180
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.44 E-value=0.013 Score=55.84 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=34.4
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.+.+|.||.|+|||+-+...+......+.+|++..|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4899999999999999999999999999999999876
No 181
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.43 E-value=0.011 Score=62.40 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=22.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
...+++||||||||+++..+...+ +.+.+.+
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~---~~~~~~~ 82 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL---DVPFTMA 82 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCEEEe
Confidence 357999999999999877766554 4444444
No 182
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.43 E-value=0.017 Score=62.88 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=41.2
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHH-cCCeEEEEcCChHHHHHHHHHHHh
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~-~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
+.+++|.|+||+|||+++..++..+.. .|.+|++.+.-.. .+.+..|+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHH
Confidence 579999999999999999999998886 4789999887644 4577777653
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.42 E-value=0.011 Score=62.45 Aligned_cols=30 Identities=33% Similarity=0.597 Sum_probs=23.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
-.+++||||||||+++..+...+ +..++.+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~---~~~~~~v 115 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA---NSTFFSV 115 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---TCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEe
Confidence 37899999999999988777765 4455444
No 184
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.42 E-value=0.015 Score=57.32 Aligned_cols=51 Identities=10% Similarity=0.123 Sum_probs=33.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHH------cCCeEEEEcCChH-HHHHHHHHHHh
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQ------QGERVLVTAPTNA-AVDNMVEKLSD 301 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~------~g~rVLv~a~SN~-AvD~l~erL~~ 301 (690)
..+++|.||||+||||++..++...+. .+.+++.+..... ....+.+++..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER 81 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence 468999999999999999988876443 2456666654442 23344444433
No 185
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.41 E-value=0.013 Score=61.86 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAV 276 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~ 276 (690)
..+|.||||||||+++..+...+-
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999998888777764
No 186
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.40 E-value=0.0074 Score=62.86 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 239 QKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 239 Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+++..++... ...++.||||||||+++..+...+
T Consensus 35 ~~~~l~~~l~~~-~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 35 MINRLLIGICTG-GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHT-CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CeEEEECCCCCcHHHHHHHHHHHh
Confidence 345555555443 357999999999999887776544
No 187
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.40 E-value=0.015 Score=54.87 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=29.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.+.+|.|+||+||||++..+...+-..|.++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4789999999999999999888887778777665
No 188
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.40 E-value=0.0079 Score=60.17 Aligned_cols=23 Identities=52% Similarity=0.761 Sum_probs=19.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
-.+|+||||||||+++..+...+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 47899999999999888776654
No 189
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.39 E-value=0.0099 Score=65.91 Aligned_cols=50 Identities=12% Similarity=0.215 Sum_probs=42.1
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEEcCChHHHHHHHHHHHh
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
..+++|.|+||+|||+++..++..+..+ |.+|++++.-.. ..++..|+..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHH
Confidence 5799999999999999999999998876 889999987654 4577777643
No 190
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.38 E-value=0.017 Score=54.30 Aligned_cols=36 Identities=39% Similarity=0.491 Sum_probs=30.4
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
++.+|.||+|+||||++..++..+...|.+|-++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 588999999999999999999888777777765554
No 191
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.36 E-value=0.027 Score=58.58 Aligned_cols=57 Identities=21% Similarity=0.429 Sum_probs=40.5
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC-C--hHHHHHHHHHHHhcCCcee
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP-T--NAAVDNMVEKLSDVGLNIV 307 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~-S--N~AvD~l~erL~~~~~~~v 307 (690)
..+..|.||+|+|||||+..+...+...+.+|++.+. + ..|.+.+...-...++.++
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v 188 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVI 188 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEE
Confidence 4589999999999999999998888777778876643 2 3455655544444455444
No 192
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.32 E-value=0.035 Score=57.13 Aligned_cols=46 Identities=35% Similarity=0.500 Sum_probs=35.0
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC-C--hHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP-T--NAAVDNMV 296 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~-S--N~AvD~l~ 296 (690)
..+..|.||.|+||||++..+...+...+.+|++.+. + ..|++++.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~ 148 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLE 148 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHH
Confidence 3588999999999999999988888777778888763 2 23445543
No 193
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.31 E-value=0.016 Score=58.18 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=29.0
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
.+.+|.|+||+||||++..+...+...|..++++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 47899999999999999998888777787766543
No 194
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.29 E-value=0.014 Score=60.74 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=19.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
...+|+||||||||+++..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35799999999999998777544
No 195
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.015 Score=59.87 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHhcCC-CCeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 236 DDSQKKAIALGLNKK-RPLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 236 N~~Q~~Av~~al~~~-~~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
.+...+.+...+... .+..+|+||||||||+++..+...+..
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 334455566655542 234899999999999999888888754
No 196
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.24 E-value=0.011 Score=54.87 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=19.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.||||+||||++..+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887766554
No 197
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.24 E-value=0.018 Score=61.59 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.0
Q ss_pred CCeEEE--eCCCCCChhHHHHHHHHHHHH
Q 038763 251 RPLLII--QGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 251 ~~~~lI--~GPPGTGKT~tl~~~i~~l~~ 277 (690)
....+| .||||||||+++.++...+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 357888 999999999999988887654
No 198
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.22 E-value=0.014 Score=61.60 Aligned_cols=32 Identities=34% Similarity=0.554 Sum_probs=23.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
...+|+||||||||+++..+...+ +..++.+.
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~ 149 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS---GATFFSIS 149 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEe
Confidence 468999999999999988776553 44554443
No 199
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.21 E-value=0.031 Score=59.60 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=24.6
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.-.||+||||||||+++..+... .+..++.+..+
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~ 182 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAA 182 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHH
Confidence 46899999999999988776444 35566555443
No 200
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.21 E-value=0.033 Score=63.82 Aligned_cols=66 Identities=27% Similarity=0.390 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHH---hcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 234 TFDDSQKKAIALG---LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 234 ~LN~~Q~~Av~~a---l~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
.++..|.+|+... +.......++.|.+|||||.|++.++.+. ++++||++++...+..+.+.|...
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~---~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL---GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 4777888887653 33222345789999999999999988665 568999999999999999999876
No 201
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.20 E-value=0.018 Score=57.74 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=45.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLN 305 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~ 305 (690)
+..++|.|+||||||++....+...+++|.+++++++. ...+.+..++...|++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~-e~~~~l~~~~~~~G~d 74 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLIIRILSRFGVD 74 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe-CCHHHHHHHHHHcCCC
Confidence 45789999999999988899999999999999999995 4566777777777665
No 202
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.19 E-value=0.018 Score=60.80 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHhcCC--CCeEEEeCCCCCChhHHHHHHHHHHH
Q 038763 236 DDSQKKAIALGLNKK--RPLLIIQGPPGTGKTGLLKEIIARAV 276 (690)
Q Consensus 236 N~~Q~~Av~~al~~~--~~~~lI~GPPGTGKT~tl~~~i~~l~ 276 (690)
.+...+.+..++... ....+|+||||||||+++..+...+.
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344455555555432 13579999999999999988777664
No 203
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.17 E-value=0.019 Score=54.22 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=26.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+.+|.|+|||||||++..+...+-..|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999888887776667666654
No 204
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.13 E-value=0.024 Score=60.15 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=19.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
...+++||||||||+++..+...+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999887776655
No 205
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.12 E-value=0.0091 Score=60.59 Aligned_cols=21 Identities=43% Similarity=0.816 Sum_probs=17.9
Q ss_pred EEEeCCCCCChhHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~ 274 (690)
.+++||||||||+++..+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 799999999999988776554
No 206
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.10 E-value=0.01 Score=55.53 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=20.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.|||||||||++..+...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999888776654
No 207
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.03 E-value=0.044 Score=58.98 Aligned_cols=59 Identities=25% Similarity=0.305 Sum_probs=40.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC---ChHHHHHHHHHHHhcCCceeecC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP---TNAAVDNMVEKLSDVGLNIVRVG 310 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~---SN~AvD~l~erL~~~~~~~vRiG 310 (690)
.+.+|.||+|+||||++..+...+...|.+|++... ...|.+.+...-...+++++-.+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~ 160 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 160 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecC
Confidence 367788999999999999999999888888887642 23344444332223466666544
No 208
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.01 E-value=0.017 Score=57.69 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
..++++.|.||+||||++..++..+. .|.+|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 35789999999999999999999998 899998875
No 209
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.99 E-value=0.016 Score=60.70 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHh-cCC-CCeEEEeCCCCCChhHHHHHHHHHHHHc
Q 038763 236 DDSQKKAIALGL-NKK-RPLLIIQGPPGTGKTGLLKEIIARAVQQ 278 (690)
Q Consensus 236 N~~Q~~Av~~al-~~~-~~~~lI~GPPGTGKT~tl~~~i~~l~~~ 278 (690)
++...+++..++ ... .+..+|.|||||||||++..+...+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 556666776666 432 2348999999999999998888766543
No 210
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.95 E-value=0.049 Score=57.31 Aligned_cols=56 Identities=34% Similarity=0.452 Sum_probs=38.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC-C--hHHHHHHHHHHHhcCCcee
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP-T--NAAVDNMVEKLSDVGLNIV 307 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~-S--N~AvD~l~erL~~~~~~~v 307 (690)
.+..|.||.|+|||||+..+...+...+.+|++.+. + ..|++++...-...++.++
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v 216 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV 216 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEE
Confidence 478899999999999999988888777778888763 2 2345554332222345444
No 211
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.91 E-value=0.014 Score=54.52 Aligned_cols=21 Identities=38% Similarity=0.748 Sum_probs=18.3
Q ss_pred eEEEeCCCCCChhHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~ 273 (690)
+.+|.|||||||||++..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 678999999999998877665
No 212
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.89 E-value=0.012 Score=58.76 Aligned_cols=22 Identities=41% Similarity=0.853 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+|.|||||||||++..+...+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999887766543
No 213
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.88 E-value=0.029 Score=57.78 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=35.5
Q ss_pred HHHHhcCC-CCeEEEeCCCCCChhHHHHHHHHHHHHc---CCeEEEEcCC--hHHHHHHHH
Q 038763 243 IALGLNKK-RPLLIIQGPPGTGKTGLLKEIIARAVQQ---GERVLVTAPT--NAAVDNMVE 297 (690)
Q Consensus 243 v~~al~~~-~~~~lI~GPPGTGKT~tl~~~i~~l~~~---g~rVLv~a~S--N~AvD~l~e 297 (690)
+..++..+ .+..+++||||||||+++..++...... ...++...++ +..+|.+.+
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~ 69 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRT 69 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHH
Confidence 34444432 3579999999999999988877753221 3456666655 455555544
No 214
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.85 E-value=0.016 Score=54.64 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=23.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQG 279 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g 279 (690)
.+.+|.|||||||||++..+...+-..|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3789999999999999888877765555
No 215
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.84 E-value=0.032 Score=53.51 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=25.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLV 284 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv 284 (690)
.+.+|.|||||||||++..+...+-..| .++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE
Confidence 3689999999999999988887765555 5543
No 216
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.82 E-value=0.025 Score=61.86 Aligned_cols=23 Identities=43% Similarity=0.762 Sum_probs=19.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
-.+++||||||||+++..+...+
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHh
Confidence 58999999999999988777664
No 217
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.82 E-value=0.014 Score=53.95 Aligned_cols=29 Identities=34% Similarity=0.754 Sum_probs=21.4
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLV 284 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv 284 (690)
.+.+|.|||||||||++..+ -..|..++-
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEEE
Confidence 36789999999999988766 234555443
No 218
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.81 E-value=0.044 Score=69.28 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=36.5
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNA 290 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~ 290 (690)
...++|.||||||||+++.+++....+.|.++++.+..+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 4589999999999999999999999999999999998765
No 219
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.81 E-value=0.031 Score=58.90 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=31.5
Q ss_pred HHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEE
Q 038763 243 IALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVT 285 (690)
Q Consensus 243 v~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~ 285 (690)
+...+..+.++.+|.||.|+||||++..++..+-.. +.+|+..
T Consensus 115 l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 333333445799999999999999999888877654 5566543
No 220
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.80 E-value=0.018 Score=54.26 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.3
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
...+|.|||||||||++..+...+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999988877665
No 221
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=94.77 E-value=0.066 Score=61.15 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHhc-------CCCCeEEEeCCCCCChhHHHHHHHHHHHHcC-------CeEEEEcCChHHHHHHHHHH
Q 038763 234 TFDDSQKKAIALGLN-------KKRPLLIIQGPPGTGKTGLLKEIIARAVQQG-------ERVLVTAPTNAAVDNMVEKL 299 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~-------~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g-------~rVLv~a~SN~AvD~l~erL 299 (690)
.|-+.|++||.+.+. ....=.++.-+.|+|||.+++.++..+...+ .++||++|+ ..+.+..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 589999999998652 1223468889999999999999999888753 469999997 5666766666
Q ss_pred Hhc
Q 038763 300 SDV 302 (690)
Q Consensus 300 ~~~ 302 (690)
.+.
T Consensus 134 ~~~ 136 (644)
T 1z3i_X 134 GKW 136 (644)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 222
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.75 E-value=0.014 Score=61.07 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=19.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+|+||||||||+++..+...+
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred eEEEECCCCccHHHHHHHHHHhC
Confidence 48999999999999887776654
No 223
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.75 E-value=0.067 Score=54.74 Aligned_cols=59 Identities=25% Similarity=0.305 Sum_probs=40.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC---ChHHHHHHHHHHHhcCCceeecC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP---TNAAVDNMVEKLSDVGLNIVRVG 310 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~---SN~AvD~l~erL~~~~~~~vRiG 310 (690)
.+..|.||+|+||||++..+...+...|.+|++... .+.+...+..-....++.++..+
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~ 160 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 160 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcC
Confidence 366777999999999999999998888888887653 23333333332233456655443
No 224
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.74 E-value=0.019 Score=59.19 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=21.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVL 283 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVL 283 (690)
...+|+||||||||+++..+.......+...+
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v 57 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLV 57 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCC
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeE
Confidence 45799999999999877665554333344433
No 225
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.71 E-value=0.018 Score=59.72 Aligned_cols=54 Identities=13% Similarity=0.303 Sum_probs=38.8
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHH------------HcC----CeEEEEcCChH-HHHHHHHHHHhcCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAV------------QQG----ERVLVTAPTNA-AVDNMVEKLSDVGL 304 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~------------~~g----~rVLv~a~SN~-AvD~l~erL~~~~~ 304 (690)
..+++|.||||||||+++..++.... ..| .++++++..+. -.+.+.+++...++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCC
Confidence 46899999999999999999887642 224 68888876664 25666666554443
No 226
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.67 E-value=0.031 Score=57.53 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=31.2
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
..+..|.||.|+||||++..+...+...+.+|++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 4588899999999999999988887767778887764
No 227
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.64 E-value=0.063 Score=58.65 Aligned_cols=45 Identities=29% Similarity=0.448 Sum_probs=34.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE-cCCh--HHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT-APTN--AAVDNMV 296 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~-a~SN--~AvD~l~ 296 (690)
.++.|.||.|+||||++..+...+...+.+|++. +.+. .|++.+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~ 341 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQ 341 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHH
Confidence 4788999999999999999888877777889886 3332 2455543
No 228
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.62 E-value=0.018 Score=54.47 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=20.5
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.||||+||||++..+...+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999988877665
No 229
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.60 E-value=0.03 Score=53.87 Aligned_cols=34 Identities=18% Similarity=0.413 Sum_probs=27.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.+.+|.|||||||||++..+...+-..+-.+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 4789999999999999998888876677666443
No 230
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.53 E-value=0.021 Score=53.62 Aligned_cols=24 Identities=42% Similarity=0.811 Sum_probs=20.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.|||||||||++..+...+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 468899999999999888776654
No 231
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.53 E-value=0.023 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.604 Sum_probs=20.8
Q ss_pred CCCeEEEeCCCCCChhHHHHHHHHH
Q 038763 250 KRPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 250 ~~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
...+.+|.||+|+||||++..++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999988777654
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.49 E-value=0.025 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
....+|.||||+||||++..+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578999999999999988887665
No 233
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.45 E-value=0.017 Score=58.48 Aligned_cols=22 Identities=41% Similarity=0.853 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+|.|||||||||++..+...+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 7899999999999887766544
No 234
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.39 E-value=0.036 Score=54.25 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=34.3
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.+.++.||.|+||||.+..++..+...|.+|++..|.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999999999865
No 235
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.35 E-value=0.043 Score=57.21 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHHHHHhcCC--CCeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 241 KAIALGLNKK--RPLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 241 ~Av~~al~~~--~~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
+.+..++..+ .+..+++||||||||+++..++..+..
T Consensus 12 ~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3444444432 235899999999999999988888764
No 236
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.33 E-value=0.026 Score=53.37 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.|||||||||++..+...+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999887766554
No 237
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.33 E-value=0.022 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=18.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
.+.+|.|||||||||++..+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999987666544
No 238
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.31 E-value=0.025 Score=56.62 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=19.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.|||||||||++..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999988887654
No 239
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.29 E-value=0.027 Score=62.10 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 240 KKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 240 ~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+++..++... ...++.||||||||+++..+...+
T Consensus 31 i~~l~~al~~~-~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 31 IRLCLLAALSG-ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHHHHHHHT-CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHhcC-CeeEeecCchHHHHHHHHHHHHHH
Confidence 34444444443 457999999999999877666544
No 240
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.28 E-value=0.037 Score=57.57 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 238 ~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+.+.. +.. ++.+|.||+|+|||+++.++...+
T Consensus 20 ~el~~L~~-l~~--~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 20 KEIEKLKG-LRA--PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHH-TCS--SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcC--CcEEEECCCCCCHHHHHHHHHHhc
Confidence 45566666 664 689999999999999998887764
No 241
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.28 E-value=0.027 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.|||||||||++..+...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999887776654
No 242
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.27 E-value=0.04 Score=53.58 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=31.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE-cCChHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT-APTNAAV 292 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~-a~SN~Av 292 (690)
-+.+|.||||+||||.+..+...+-..|.+|.++ -|.....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~ 48 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPL 48 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHH
Confidence 4789999999999999999888887788777655 3443333
No 243
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.24 E-value=0.045 Score=60.23 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=22.4
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.-.+|+||||||||+++..+...+ +..++.+
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~---~~~fv~v 269 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANET---GAFFFLI 269 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHC---SSEEEEE
T ss_pred CcEEEECcCCCCHHHHHHHHHHHh---CCCEEEE
Confidence 357999999999999887765443 4455444
No 244
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.24 E-value=0.085 Score=50.38 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCe
Q 038763 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGER 281 (690)
Q Consensus 235 LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~r 281 (690)
++..++.+.. .....+..|.||+|+||||++..+...+-..|..
T Consensus 12 ~~~~~~~~~~---~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 12 VEKVDRQRLL---DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp CCHHHHHHHH---TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cCHHHHHHhc---CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 5556665443 2234688999999999999988888777655643
No 245
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=94.24 E-value=0.013 Score=66.54 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=39.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
+...+++||.|||||..... .+++.+.++|+++|+...+.++.+++.+
T Consensus 232 ~~~vlv~ApTGSGKT~a~~l---~ll~~g~~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVPA---AYAAQGYKVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp CEEEEEECCTTSCTTTHHHH---HHHHTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCchhHHHHHHH---HHHHCCCeEEEEcchHHHHHHHHHHHHH
Confidence 35689999999999965543 3445778999999999999999998865
No 246
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.22 E-value=0.028 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=19.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.|||||||||++..+...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999887776654
No 247
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.21 E-value=0.051 Score=59.56 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcC-CCCeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 237 DSQKKAIALGLNK-KRPLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 237 ~~Q~~Av~~al~~-~~~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
+...+.+..++.. ..+-.++.||||||||+++-.+...+..
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3444445444422 2345799999999999988777776654
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.20 E-value=0.022 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=19.6
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
..+.+|.||||+||||++..+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999988766543
No 249
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.20 E-value=0.026 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.559 Sum_probs=19.6
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
++.+|.|||||||||+...+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999887776654
No 250
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.20 E-value=0.04 Score=57.87 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=33.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCCh
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN 289 (690)
.+.++.|-+|+||||+.+.++..+.+.|+|||++..--
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 47888999999999999999999999999999887543
No 251
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.16 E-value=0.023 Score=58.06 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=20.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.||||+||||++..+...+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999988876653
No 252
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.16 E-value=0.043 Score=52.68 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=26.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVL 283 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVL 283 (690)
.+.+|.|||||||||++..+...+-..+-.+.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 47899999999999999888887766665553
No 253
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.15 E-value=0.027 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=18.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+|.|||||||||+...+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 46889999999999887776554
No 254
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.13 E-value=0.034 Score=53.24 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=21.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+.+|.||||+||||++..+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999988777665
No 255
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.12 E-value=0.041 Score=57.14 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 238 ~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+.+..++... ++.+|.||+|+|||+++.++...+
T Consensus 19 ~el~~L~~~l~~~-~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 19 EESRKLEESLENY-PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcC-CeEEEECCCcCCHHHHHHHHHHHc
Confidence 3455566666543 689999999999999998887664
No 256
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.11 E-value=0.032 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.562 Sum_probs=20.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+.+|.|||||||||++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999888776654
No 257
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.11 E-value=0.042 Score=58.67 Aligned_cols=57 Identities=26% Similarity=0.382 Sum_probs=44.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhcCCceeecCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDVGLNIVRVGN 311 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~~~~~vRiG~ 311 (690)
++.++|.||+|+|||+++..++.++...|.+|+++-+.+.... +++. .|-.+++++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~~~---~gg~~~~~~~ 91 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKE-MCRK---LGGVWINCTG 91 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHH-HHHH---TTCEEEETTS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHH-HHHH---cCCEEEEECC
Confidence 3568999999999999999999999888999999988775433 2332 3556777764
No 258
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.03 E-value=0.028 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.||||+||||++..+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999887776655
No 259
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.01 E-value=0.031 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+|.|||||||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999887776654
No 260
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.00 E-value=0.033 Score=54.34 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=19.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.||||+||||.+..++..+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999877666554
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.99 E-value=0.014 Score=56.32 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=26.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+.+|.|||||||||.+..+...+-..|.+|.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999988887776566666554
No 262
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.98 E-value=0.05 Score=52.61 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=34.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCCh
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTN 289 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN 289 (690)
..+.+|.||.|+||||.+...+..+...|.++++..|.-
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 468999999999999989888888888999999998853
No 263
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.98 E-value=0.076 Score=53.63 Aligned_cols=34 Identities=24% Similarity=0.493 Sum_probs=30.1
Q ss_pred CeEEEeCC-CCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 252 PLLIIQGP-PGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 252 ~~~lI~GP-PGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.+.+|.|+ ||.||||+.+.++..+.+.|+|||++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 46777766 89999999999999999999999986
No 264
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.96 E-value=0.052 Score=52.03 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=27.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.+..|.||+|+||||++..+...+-..+..|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 4789999999999999888777665556666655
No 265
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.95 E-value=0.033 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.|||||||||++..+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 46899999999999888777655
No 266
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.94 E-value=0.031 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=20.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.|||||||||++..+...+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999887776654
No 267
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.94 E-value=0.034 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.|||||||||++..+...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776654
No 268
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.93 E-value=0.071 Score=52.30 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=29.1
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc----CCeEEEEc-CChHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ----GERVLVTA-PTNAAV 292 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~----g~rVLv~a-~SN~Av 292 (690)
.-+.+|.||||+||||.+..+...+-.. |.+|.++. |+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~ 71 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRL 71 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChH
Confidence 3588999999999999999988888776 87776553 443333
No 269
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.92 E-value=0.047 Score=56.73 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=33.4
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
.+++..|-+|+||||+.+.+...+.+.|+|||++..-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3789999999999999999999999999999988654
No 270
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.92 E-value=0.052 Score=57.03 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=32.5
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
.++..|.||||+||||++-.++..+...+.+|.|.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 4678999999999999999999988888888888875
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.92 E-value=0.034 Score=53.78 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=17.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+|.||||+||||.+..++..+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999877666543
No 272
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.89 E-value=0.032 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=19.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.|||||||||++..+...+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999887776554
No 273
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.87 E-value=0.043 Score=53.99 Aligned_cols=33 Identities=33% Similarity=0.673 Sum_probs=26.5
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.+.+|.||||+||||.+..+...+-. |..++.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 47899999999999998888777755 6666554
No 274
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.86 E-value=0.063 Score=50.20 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=25.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.+.+|.|+|||||||++..+...+...|..++.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 4678999999999999888877765556555433
No 275
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.83 E-value=0.036 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=19.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.||||+||||++..+...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 478999999999999887766554
No 276
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.81 E-value=0.042 Score=53.39 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.0
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.|||||||||.+..+...+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999887776654
No 277
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.79 E-value=0.086 Score=54.06 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=30.8
Q ss_pred CeEEEeCC-CCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 252 PLLIIQGP-PGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 252 ~~~lI~GP-PGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
.+.+|.|+ ||.||||+.+.++..+.+.|+|||++-
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 46777776 899999999999999999999999873
No 278
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.75 E-value=0.025 Score=53.01 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=15.0
Q ss_pred CeEEEeCCCCCChhHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
.+.+|.|+|||||||++..+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999988776544
No 279
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.72 E-value=0.043 Score=54.36 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=20.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+.+|.||||+||||++..+...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999887776554
No 280
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.71 E-value=0.032 Score=53.24 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=24.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
.+.+|.|||||||||++..+...+ .|.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 478999999999999988777665 344555443
No 281
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.70 E-value=0.033 Score=60.96 Aligned_cols=22 Identities=45% Similarity=0.860 Sum_probs=18.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+|.||||||||+++..+...+
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999987776643
No 282
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.70 E-value=0.025 Score=53.34 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=29.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
.+|.||+|||||+.+..++.. +.+++.++.....-+++.+|+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHH
Confidence 689999999999988776644 667777776655556777777654
No 283
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.69 E-value=0.029 Score=54.30 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=17.5
Q ss_pred EEEeCCCCCChhHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~ 274 (690)
.+|.|||||||||++..+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999988776654
No 284
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.67 E-value=0.06 Score=56.28 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
..+..|.||||+||||++..++..+...+.+|.+.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 4688999999999999999888887777788888764
No 285
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.67 E-value=0.042 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+|.|+|||||||+...+...+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999887766554
No 286
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.67 E-value=0.067 Score=56.68 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=29.8
Q ss_pred CCCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEEc
Q 038763 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTA 286 (690)
Q Consensus 250 ~~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~a 286 (690)
...+.+|.||+|+||||++..++..+-.. ..+|++.-
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 35689999999999999999988877654 56776654
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.65 E-value=0.083 Score=53.03 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=29.3
Q ss_pred CCCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEEc
Q 038763 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTA 286 (690)
Q Consensus 250 ~~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~a 286 (690)
++.+.+|.||.|+||||++..++..+-.. ..+|++..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 45789999999999999998888766544 55777654
No 288
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.65 E-value=0.042 Score=51.75 Aligned_cols=23 Identities=52% Similarity=0.884 Sum_probs=18.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
...|.||+|+||||++..+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999987776655
No 289
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.63 E-value=0.083 Score=58.77 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=37.5
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLS 300 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~ 300 (690)
..+++|.||||+||||++..++..+...|.+++..++-+.. ..+..++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~-~~l~~~~~ 329 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR-AQLLRNAY 329 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH-HHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHHH
Confidence 56899999999999999998888777678888777665543 35555543
No 290
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.62 E-value=0.035 Score=53.31 Aligned_cols=25 Identities=36% Similarity=0.744 Sum_probs=20.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+.+|.||||+||||++..+...+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999887776654
No 291
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.60 E-value=0.064 Score=58.09 Aligned_cols=41 Identities=29% Similarity=0.642 Sum_probs=37.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVD 293 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD 293 (690)
.++|.||+|||||+++..++.+++..|.+++|.=+......
T Consensus 55 h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 58999999999999999999999999999999999887654
No 292
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.60 E-value=0.042 Score=51.83 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=19.3
Q ss_pred CeEEEeCCCCCChhHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
...+|.|||||||||+...+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999988776654
No 293
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.59 E-value=0.038 Score=52.22 Aligned_cols=30 Identities=37% Similarity=0.595 Sum_probs=22.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+.+|.||||+||||++..+.. ..+..+.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~ 33 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA---QLDNSAYIE 33 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---HSSSEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhc---ccCCeEEEc
Confidence 678999999999999888754 223345554
No 294
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.58 E-value=0.051 Score=52.79 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
..++.|.||||+||||++..++..+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999888775543
No 295
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.56 E-value=0.042 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.|||||||||.+..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999887777655
No 296
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.55 E-value=0.069 Score=54.46 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=28.2
Q ss_pred eEEEe--CCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQ--GPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~--GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+++.. +-+|+||||+.+.+...+.+.|.+||++
T Consensus 37 i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 37 IVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp EEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 44444 5899999999999999999999999984
No 297
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.54 E-value=0.035 Score=54.02 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=19.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.||||+||||.+..+...+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999887776654
No 298
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.54 E-value=0.066 Score=51.65 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHH-HcCCeEEEEc
Q 038763 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAV-QQGERVLVTA 286 (690)
Q Consensus 235 LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~-~~g~rVLv~a 286 (690)
....++.... .. ...+.+|.||||+||||++..+...+- ..|.++.++.
T Consensus 12 ~~~~~r~~~~--~~-~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 12 LTRSERTELR--NQ-RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CCHHHHHHHH--TS-SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCHHHhhccc--CC-CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 4556666643 22 235788999999999999888877775 5665555553
No 299
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.51 E-value=0.043 Score=54.42 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=19.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
-..+|.||||+||||++..+...+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999887776654
No 300
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.48 E-value=0.054 Score=58.54 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=19.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
-.++.||||||||+++..+...+
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Confidence 47999999999999887766654
No 301
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.43 E-value=0.049 Score=50.21 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=18.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+|.|+|||||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999887776654
No 302
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=93.42 E-value=0.03 Score=68.14 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=57.1
Q ss_pred CCCeEEecccCccCccccEEEEEeeecCCCC----cccc--------cCC-------CCceeeeeccccccEEEEecCcc
Q 038763 587 AAGVEVATIDSFQGREADAVIISMVRSNTLG----AVGF--------LGD-------SRRMNVAITRACKHVAVVCDSST 647 (690)
Q Consensus 587 ~~~v~V~TVd~fQG~E~dvVIlS~vrsn~~~----~~gf--------l~d-------~rRlNVAlTRAk~~LiivG~~~t 647 (690)
.++|.|.|+|..+|.|+++|++..+..+... .-+| ..| .|.++|||||||+.|++......
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~~~ 735 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBC
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeCCc
Confidence 4689999999999999999999887655321 1223 112 33479999999999999865432
Q ss_pred ------cccChHHHHHHHHHHH
Q 038763 648 ------ICHNTFLARLLRHIRY 663 (690)
Q Consensus 648 ------l~~~~~~~~l~~~~~~ 663 (690)
...+.|+..+.+++..
T Consensus 736 ~~~g~~~~PSrfL~eL~~~l~~ 757 (1122)
T 1w36_C 736 IQDNSERFPSVLVQELIDYIGQ 757 (1122)
T ss_dssp SSSCCBCCBCHHHHHHHHHHHT
T ss_pred CCCCCcCCCCHHHHHHHHHHHH
Confidence 2346799999998865
No 303
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.38 E-value=0.035 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=19.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.|||||||||++..+...+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999887766543
No 304
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.37 E-value=0.047 Score=53.62 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.3
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
...+|.|||||||||++..+...+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999888777665
No 305
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.35 E-value=0.055 Score=51.62 Aligned_cols=24 Identities=38% Similarity=0.757 Sum_probs=20.1
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
+.+..|.||+|+||||++..+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468899999999999988776654
No 306
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.31 E-value=0.04 Score=52.71 Aligned_cols=22 Identities=23% Similarity=0.591 Sum_probs=18.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
+.+|.|||||||||++..+...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999988777655
No 307
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.28 E-value=0.054 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=20.3
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.||+|+||||++..+...+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 588999999999999888776643
No 308
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.28 E-value=0.067 Score=55.78 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=33.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
..+.++.|-+|+||||+.+.+...+.+.|++||++..-
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 35889999999999999999999999999999887654
No 309
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.21 E-value=0.13 Score=50.67 Aligned_cols=45 Identities=20% Similarity=0.424 Sum_probs=33.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCe-EEEE-cCChHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGER-VLVT-APTNAAVDNMV 296 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~r-VLv~-a~SN~AvD~l~ 296 (690)
-+.+|.||||+||||.+..+...+-..|.+ +.++ -|+....-+.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~i 74 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKL 74 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHH
Confidence 488999999999999999999888888876 4433 45444443333
No 310
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.18 E-value=0.11 Score=61.43 Aligned_cols=50 Identities=22% Similarity=0.435 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcC-CCCeEEEeCCCCCChhHHHHHHHHHHHH-------cCCeEEEEcC
Q 038763 238 SQKKAIALGLNK-KRPLLIIQGPPGTGKTGLLKEIIARAVQ-------QGERVLVTAP 287 (690)
Q Consensus 238 ~Q~~Av~~al~~-~~~~~lI~GPPGTGKT~tl~~~i~~l~~-------~g~rVLv~a~ 287 (690)
...+.+..++.. ..+..++.||||||||+++..+...+.. .+.+++.+..
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 334444444432 2234689999999999998888887765 3566665543
No 311
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.17 E-value=0.087 Score=59.47 Aligned_cols=38 Identities=34% Similarity=0.553 Sum_probs=34.0
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT 288 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S 288 (690)
..+.++.|.+|+||||+.+.+...+.+.|+|||++..-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 35889999999999999999999999999999987644
No 312
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.17 E-value=0.067 Score=66.79 Aligned_cols=45 Identities=27% Similarity=0.342 Sum_probs=39.2
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l 295 (690)
..+++|.||||+|||+++..++......|.++++.+.-+..-...
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~ 427 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 427 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHH
Confidence 579999999999999999999999999999999998877655443
No 313
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.16 E-value=0.099 Score=60.93 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=27.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
..++.||||||||+++..+...+...+..++.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 4899999999999999888888766666555443
No 314
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.14 E-value=0.052 Score=60.64 Aligned_cols=25 Identities=48% Similarity=0.848 Sum_probs=20.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+..++.||||||||+++..+...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999887666555
No 315
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.14 E-value=0.05 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+|.|||||||||.+..+...+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999887777665
No 316
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.13 E-value=0.029 Score=65.20 Aligned_cols=20 Identities=40% Similarity=0.863 Sum_probs=17.3
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.|++||||||||+++..++.
T Consensus 241 ILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999998876654
No 317
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.11 E-value=0.076 Score=55.55 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=30.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
..+..|.||||+||||++..+...+...+.+|.+++
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 457889999999999999999888887888887765
No 318
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.10 E-value=0.035 Score=55.45 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.|||||||||++..+...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999887776554
No 319
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.04 E-value=0.059 Score=51.46 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=20.0
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+..|.||||+||||++..+...+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3588999999999999877665543
No 320
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.00 E-value=0.05 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=18.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+|.|||||||||.+..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5889999999999887777655
No 321
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.95 E-value=0.094 Score=50.89 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=34.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCC-eEEEE-cCChHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGE-RVLVT-APTNAAVDNMVEKL 299 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~-rVLv~-a~SN~AvD~l~erL 299 (690)
-+.+|.||+|+||||.+..+...+-..|. .|.++ -|+...+-+.+..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~ 53 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSL 53 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHH
Confidence 47899999999999999999888888885 65444 34544444444444
No 322
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.94 E-value=0.057 Score=59.71 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEE
Q 038763 235 FDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLV 284 (690)
Q Consensus 235 LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv 284 (690)
+++.+.+-+..++... ...+|.||+|+|||||+..++..+ ....+++.
T Consensus 245 ~~~~~l~~l~~~v~~g-~~i~I~GptGSGKTTlL~aL~~~i-~~~~giit 292 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHK-FSAIVVGETASGKTTTLNAIMMFI-PPDAKVVS 292 (511)
T ss_dssp SCHHHHHHHHHHHHTT-CCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEE
T ss_pred CCHHHHHHHHHHHhCC-CEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEE
Confidence 7778888888777653 568999999999999998776544 44444443
No 323
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.93 E-value=0.1 Score=50.17 Aligned_cols=36 Identities=33% Similarity=0.502 Sum_probs=25.3
Q ss_pred CCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 250 KRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 250 ~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
...+..|.||+|+||||++..+...+-..|..+-++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v 56 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVV 56 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEE
Confidence 345889999999999998877766654434334333
No 324
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.89 E-value=0.041 Score=51.30 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=17.9
Q ss_pred CCeEEEeCCCCCChhHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKE 270 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~ 270 (690)
..+..|.||+|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 46899999999999999876
No 325
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.89 E-value=0.1 Score=50.55 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=29.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
+++..+-+|+||||+.+.++..+.+.|.|||++=|
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 45555568999999999999999999999998743
No 326
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.82 E-value=0.08 Score=66.08 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=40.6
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~er 298 (690)
..+++|.||||||||+++..++...+..|.+++.++.....-+...++
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~ 81 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK 81 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHh
Confidence 468999999999999999999999999999999998887655554444
No 327
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=92.82 E-value=0.046 Score=60.23 Aligned_cols=22 Identities=41% Similarity=0.853 Sum_probs=18.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+|.||||||||+++..+...+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999887766543
No 328
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.79 E-value=0.093 Score=56.09 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=28.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHH------cCCeEEEEcCCh
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQ------QGERVLVTAPTN 289 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~------~g~rVLv~a~SN 289 (690)
..+++|.||||+||||++..++..... .+.+++++...+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 469999999999999999877655443 235666655443
No 329
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.72 E-value=0.11 Score=60.40 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHhcC-CCCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 236 DDSQKKAIALGLNK-KRPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 236 N~~Q~~Av~~al~~-~~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+...+.+..++.. ..+-.+++||||||||+++-.+...+
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34445555555532 23457999999999999887776665
No 330
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.69 E-value=0.092 Score=50.70 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=26.6
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.+..+|.|+||+||||++..++..+... .++.++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i 63 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAM 63 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEE
Confidence 3578899999999999999998886444 555544
No 331
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=92.64 E-value=0.21 Score=58.61 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHh---cCCCCeEEEeCCCCCChhHHHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 233 KTFDDSQKKAIALGL---NKKRPLLIIQGPPGTGKTGLLKEIIARAVQ---QGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 233 ~~LN~~Q~~Av~~al---~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~---~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
..|-+.|.+||...+ ... .-.++.-+.|+|||.+++.++..+.. .+.++||++| ...+.+..+.+.+.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~-~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKG-DNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTT-CCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcC-CCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHH
Confidence 369999999998654 222 34688999999999999888887754 3568999999 45577777777664
No 332
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=92.62 E-value=0.11 Score=51.70 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=30.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+++..+-+|+||||+.+.+...+.+.|.+||++-
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 5677889999999999999999999999999874
No 333
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.61 E-value=0.092 Score=50.00 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=29.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
+++..+-+|+||||+.+.+...+.+.|.+||++-.
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 34555778999999999999999999999998754
No 334
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.59 E-value=0.11 Score=52.08 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=30.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
-+++..+-+|+||||+.+.+...+.+.|.+||++=
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36677788899999999999999999999999863
No 335
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.58 E-value=0.23 Score=56.77 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHH---hcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHhc
Q 038763 235 FDDSQKKAIALG---LNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 235 LN~~Q~~Av~~a---l~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~~ 302 (690)
.|.-|..|+... +.......++.|.+|||||.+++.++.+. ++++||++++...+..+.+-|...
T Consensus 13 p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~---~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 13 PQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV---NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHH
Confidence 567787777643 33332345788999999999999988664 568999999999999999999876
No 336
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.51 E-value=0.11 Score=53.30 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=29.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+..|.|-+|+||||+.+.+...+.+.|++||++
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 444559999999999999999999999999987
No 337
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.46 E-value=0.13 Score=50.36 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=34.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHH-cCCeEEE-E-cCChHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQ-QGERVLV-T-APTNAAVDNMVEK 298 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~-~g~rVLv-~-a~SN~AvD~l~er 298 (690)
-+.+|.|++|+||||.+..+...+-. .|.++.+ + -|....+-+.+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~ 71 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRN 71 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHH
Confidence 47889999999999999999988887 8877776 4 4554444443333
No 338
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.44 E-value=0.058 Score=53.13 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=29.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+++ .|-+|+||||+.+.+...+.+.|+|||++-
T Consensus 3 I~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 445 899999999999999999999999999873
No 339
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.44 E-value=0.34 Score=54.61 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH--cCCeEEEEcCChHHHHHHHHHHHh
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ--QGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~--~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
.|++-|+..+..... ....+|.+|.|+|||++++..+...+. ++.+|+++++|...+..+.+.+..
T Consensus 163 ~l~p~Q~~i~~~l~~--~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS--KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHH--CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhcc--ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 599999998875522 357899999999999998876655443 456999999999998888777654
No 340
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.43 E-value=0.077 Score=51.52 Aligned_cols=24 Identities=38% Similarity=0.715 Sum_probs=19.4
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
....|.|||||||||++..+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999887666543
No 341
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.43 E-value=0.1 Score=54.22 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=33.1
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
..+.++.|-+|.||||+.+.+...+.+.|+|||++..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~ 55 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3588999999999999999999999999999998743
No 342
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=92.40 E-value=0.12 Score=50.54 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=30.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
+++..+-+|+||||+.+.+...+.+.|.+||++-.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 55667788999999999999999999999998743
No 343
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.39 E-value=0.11 Score=58.98 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 238 SQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 238 ~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.-.+.+..++... ...+|.|||||||||++..+...+
T Consensus 48 ~~l~~l~~~i~~g-~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 48 HAVEVIKTAANQK-RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhHhhccccccCC-CEEEEEeCCCCCHHHHHHHHhccC
Confidence 3455666667654 578999999999999887766544
No 344
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.38 E-value=0.12 Score=51.34 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=29.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+++..+-+|+||||+.+.+...+.+.|.+||++
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 566677889999999999999999999999986
No 345
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.32 E-value=0.094 Score=66.32 Aligned_cols=45 Identities=27% Similarity=0.342 Sum_probs=38.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNM 295 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l 295 (690)
....+|.||||||||+++.+++...++.|.+++.++..+..-+-.
T Consensus 1081 g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~ 1125 (2050)
T 3cmu_A 1081 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 1125 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHH
Confidence 468999999999999999999999999999999999876543333
No 346
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.31 E-value=0.1 Score=54.61 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=33.6
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHH--HcCCeEEEEcCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAV--QQGERVLVTAPT 288 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~--~~g~rVLv~a~S 288 (690)
..+.++.|-+|+||||+.+.+...+. ..|++||++..-
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 35899999999999999999999999 889999887653
No 347
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.31 E-value=0.16 Score=49.03 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHH
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
.-+-.|+.++... . +..++.|.||.|+||||++..+.-.
T Consensus 7 pk~~g~~~~l~~i-~-~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 7 PKTLGQKHYVDAI-D-TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCSHHHHHHHHHH-H-HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCHhHHHHHHhc-c-CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3466778888765 3 3468999999999999998776655
No 348
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.26 E-value=0.11 Score=51.92 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=27.9
Q ss_pred EEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 255 lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.|.|-.|+||||+.+.+...+.+.|.+||++
T Consensus 5 ~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 5 AIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 3468999999999999999999999999985
No 349
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.20 E-value=0.12 Score=52.31 Aligned_cols=31 Identities=26% Similarity=0.528 Sum_probs=28.1
Q ss_pred EEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 255 IIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 255 lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.|.|-+|+||||+.+.+...+.+.|.+||++
T Consensus 6 avs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 6 AIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 3478999999999999999999999999985
No 350
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.15 E-value=0.074 Score=50.92 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.3
Q ss_pred eEEEeCCCCCChhHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~ 273 (690)
+..|.|||||||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999998876644
No 351
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.15 E-value=0.15 Score=48.70 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=29.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+.+|-|+.|+||||.+..+...|-+.|.+|+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4578999999999999999888888898887764
No 352
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.11 E-value=0.12 Score=54.28 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAV 276 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~ 276 (690)
..++.|.|||||||||++..++..+.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999988877653
No 353
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.03 E-value=0.093 Score=49.77 Aligned_cols=22 Identities=50% Similarity=0.919 Sum_probs=17.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
+.+|.||+|+||||++..++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999988766554
No 354
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.92 E-value=0.1 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=20.5
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
+.+.+|.|||||||||++..+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999998877754
No 355
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.92 E-value=0.1 Score=61.67 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=25.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
..+|.||||||||+++..+...+...+..++.+
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 589999999999998887777766545554444
No 356
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.89 E-value=0.12 Score=49.04 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=22.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcC
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQG 279 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g 279 (690)
...|.||+|+||||++..+...+-..|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 578899999999999988877766444
No 357
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.85 E-value=0.096 Score=49.40 Aligned_cols=23 Identities=48% Similarity=0.847 Sum_probs=19.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+..|.||.|+||||++..+...+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67899999999999887766554
No 358
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.67 E-value=0.16 Score=49.01 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=28.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+++..+-.|+||||+.+.+...+.+.| +||++
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 466778899999999999999999999 99985
No 359
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.63 E-value=0.18 Score=58.80 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHhcC-CCCeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 236 DDSQKKAIALGLNK-KRPLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 236 N~~Q~~Av~~al~~-~~~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
.+.+.+.+...+.. .....+|.||||||||+++..+...+..
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34455555555543 2345799999999999998888777643
No 360
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.58 E-value=0.15 Score=49.35 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=33.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE--cCChHHHHHHHHHHHhcCCceeec
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT--APTNAAVDNMVEKLSDVGLNIVRV 309 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~--a~SN~AvD~l~erL~~~~~~~vRi 309 (690)
...+|.|+||+||||++..++..+... .++.++ .+. ..+|. .++...+..++-+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~-~~~d~--~~~~~~~~~~~~~ 94 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI-AKFDA--ERMEKHGAKVVPL 94 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT-THHHH--HHHHTTTCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC-CCccH--HHHHhcCCcEEEe
Confidence 467888999999999999998886554 444333 332 33444 2333444555444
No 361
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=91.55 E-value=0.6 Score=49.41 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHH--cCCeEEEEcCChHHHHHHHHHHHh
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQ--QGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~--~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
.|++-|+..+...-. ....+|..|-+.|||++++..+...+. .|.+|+++|+|...+..+.+++..
T Consensus 163 ~L~p~Qk~il~~l~~--~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS--KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHH--SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc--CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 599999998875432 247899999999999998887765332 567999999999888887776653
No 362
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=91.50 E-value=0.13 Score=53.98 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=33.6
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHH--HcCCeEEEEcCC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAV--QQGERVLVTAPT 288 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~--~~g~rVLv~a~S 288 (690)
..+.+..|-+|.||||+.+.+...+. +.|+|||++..-
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 35888999999999999999999999 899999987654
No 363
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.45 E-value=0.12 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.635 Sum_probs=19.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+..|.|||||||||+...+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 67899999999999887766544
No 364
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.45 E-value=0.067 Score=62.16 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=31.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc----------CChHHHHHHHHHHHhcCCceeec
Q 038763 254 LIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA----------PTNAAVDNMVEKLSDVGLNIVRV 309 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a----------~SN~AvD~l~erL~~~~~~~vRi 309 (690)
.|++||||||||.++.+++..+ +...+.+. .|..++..+.+...+....++-+
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iifi 576 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTT---TCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEEC
T ss_pred EEEecCCCCCchHHHHHHHHHh---CCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeec
Confidence 6899999999998776666543 34444332 34455566655554443334433
No 365
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.43 E-value=0.11 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.5
Q ss_pred CeEEEeCCCCCChhHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
...+|.||+|+|||+++.+++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999998877654
No 366
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.34 E-value=0.1 Score=53.13 Aligned_cols=21 Identities=38% Similarity=0.748 Sum_probs=18.2
Q ss_pred eEEEeCCCCCChhHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~ 273 (690)
+.+|.|||||||||++..+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999998877665
No 367
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.33 E-value=0.15 Score=49.93 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=30.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEEcC
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTAP 287 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~a~ 287 (690)
+++..+-+|+||||+.+.+...+.+. |++||++-.
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 55666778999999999999999998 999998743
No 368
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.32 E-value=0.12 Score=50.73 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=19.6
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
-+..|.||||+||||++..+...+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999877666554
No 369
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.30 E-value=0.12 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.726 Sum_probs=20.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.++.|.||+|+||||++..+...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999988776654
No 370
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.27 E-value=0.14 Score=49.04 Aligned_cols=24 Identities=21% Similarity=0.609 Sum_probs=20.2
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
..+.+|.||+|+||||++..++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 358899999999999988877654
No 371
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.22 E-value=0.24 Score=57.63 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=22.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
..++.||||||||+++..+...+ +..++.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i 519 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRF 519 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEE
Confidence 58999999999999888777665 4444433
No 372
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=91.21 E-value=0.1 Score=55.28 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=32.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
+.++.|..|+||||+.+.+...+...|++||++..
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 67889999999999999999999999999987765
No 373
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.18 E-value=0.11 Score=49.62 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=17.7
Q ss_pred eEEEeCCCCCChhHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~ 273 (690)
...|.|||||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 468999999999998776665
No 374
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.17 E-value=0.1 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=19.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.|||||||||+...+...+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999888877654
No 375
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.04 E-value=0.11 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=18.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+..|.|||||||||+...+...+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999887666543
No 376
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.00 E-value=0.17 Score=51.95 Aligned_cols=33 Identities=39% Similarity=0.530 Sum_probs=25.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+.++.|.||+|+||||++..+...+ ..+|++..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v 158 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFA 158 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGG
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEe
Confidence 5689999999999999988877766 44675433
No 377
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=90.91 E-value=0.12 Score=63.18 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=55.4
Q ss_pred CCCeEEecccCccCccccEEEEEeeecCCC----CcccccCC------------------------CCceeeeecccccc
Q 038763 587 AAGVEVATIDSFQGREADAVIISMVRSNTL----GAVGFLGD------------------------SRRMNVAITRACKH 638 (690)
Q Consensus 587 ~~~v~V~TVd~fQG~E~dvVIlS~vrsn~~----~~~gfl~d------------------------~rRlNVAlTRAk~~ 638 (690)
.+.|.|+|+|..+|.|+++|++..+..+.. ..-+|+.+ .+.++||+|||+..
T Consensus 585 ~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA~~~ 664 (1166)
T 3u4q_B 585 LDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDR 664 (1166)
T ss_dssp SSCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSCSSE
T ss_pred CCEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcccCe
Confidence 457999999999999999999998865431 12234322 23479999999999
Q ss_pred EEEEecC-----cccccChHHHHHHHHHH
Q 038763 639 VAVVCDS-----STICHNTFLARLLRHIR 662 (690)
Q Consensus 639 LiivG~~-----~tl~~~~~~~~l~~~~~ 662 (690)
|++.... ..+..++|+..+..++.
T Consensus 665 L~lsy~~~~~~~~~~~pS~~l~el~~~~~ 693 (1166)
T 3u4q_B 665 LYVSYPIADAEGKTLLPSMIVKRLEELFP 693 (1166)
T ss_dssp EEEEEESSCSSSCCCCBCHHHHHHHHHST
T ss_pred EEEEEeccCCCCCccCCCHHHHHHHHHcc
Confidence 9997532 33455788888877753
No 378
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.74 E-value=0.12 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=18.0
Q ss_pred CeEEEeCCCCCChhHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+..|.||||+||||++..+..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999998766544
No 379
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.68 E-value=0.32 Score=53.92 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=27.6
Q ss_pred CCeEEEeCCCCCChhHHHHHH-HHHHHHcCC-eEEEEcC
Q 038763 251 RPLLIIQGPPGTGKTGLLKEI-IARAVQQGE-RVLVTAP 287 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~-i~~l~~~g~-rVLv~a~ 287 (690)
..+++|.||||+||||++..+ +.-+...+. .|.+...
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 578999999999999999886 455666444 5555543
No 380
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=90.65 E-value=0.24 Score=51.05 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=32.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
.+..|.|=-|.|||||.+.+...|.+.|+|||++=
T Consensus 49 KVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 49 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47788899999999999999999999999999884
No 381
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.55 E-value=0.2 Score=53.00 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=30.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+++..|-+|+||||+.+.++..+.+.|++||++-
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5666678999999999999999999999999886
No 382
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.48 E-value=0.15 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+..|.||+|+||||++..+...+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999876665543
No 383
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.47 E-value=0.13 Score=53.25 Aligned_cols=34 Identities=29% Similarity=0.537 Sum_probs=26.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcC
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAP 287 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~ 287 (690)
++++|.||-|+||||++..+.... .+.+|.|+.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEe
Confidence 589999999999999988777653 4556665554
No 384
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.44 E-value=0.14 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=18.3
Q ss_pred CeEEEeCCCCCChhHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+..|.|||||||||++..+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999998776655
No 385
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.32 E-value=0.12 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=15.2
Q ss_pred CCeEEEeCCCCCChhHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEII 272 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i 272 (690)
..+..|.||+|+||||++..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4688999999999999987766
No 386
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.27 E-value=0.25 Score=50.22 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=29.2
Q ss_pred CeEEEeC-CCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 252 PLLIIQG-PPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 252 ~~~lI~G-PPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
.+.+|.| -||.||||+.+.++..+.+.|++||++-
T Consensus 93 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 93 NVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp CEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3555555 5899999999999999999999999873
No 387
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.25 E-value=0.17 Score=50.59 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=28.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+++..+-+|+||||+.+.+...+. .|.+||++
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 456677889999999999999999 99999887
No 388
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=90.21 E-value=0.22 Score=50.53 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=28.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+++..+-.|+||||+.+.+...+.+.|.+||++
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 455567789999999999999999999999885
No 389
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.20 E-value=0.28 Score=50.39 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=24.8
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHH--HcCCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAV--QQGERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~--~~g~rVLv~ 285 (690)
..+..|.||+|+||||++..+...+- -.+..|.++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi 116 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEE
Confidence 35789999999999999876655543 123456663
No 390
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.14 E-value=0.15 Score=50.67 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=28.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+++..+-+|+||||+.+.+...+.+.|.+||++
T Consensus 9 I~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 9 IALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 344457789999999999999999999999987
No 391
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.02 E-value=0.19 Score=47.78 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=18.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
.+..|.|+|||||||+...+...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999988776654
No 392
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.00 E-value=0.22 Score=50.72 Aligned_cols=35 Identities=14% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
..+..|.||+||||||++..+...+-..+.++.++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI 39 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI 39 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEe
Confidence 35789999999999999887776654444444333
No 393
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.88 E-value=0.19 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=19.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
...+|.||||+||||++..+...+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999887776654
No 394
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.86 E-value=0.19 Score=48.13 Aligned_cols=25 Identities=20% Similarity=0.543 Sum_probs=20.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..++.|.||.|+||||++..+...+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999887766543
No 395
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.79 E-value=0.23 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.0
Q ss_pred eEEEeCCCCCChhHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~ 273 (690)
-.+|.||+|+||||++.+++.
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999988876
No 396
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=89.72 E-value=0.14 Score=53.86 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=29.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+++..+-+|+||||+.+.+...+.+.|+|||++
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 456668899999999999999999999999988
No 397
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.69 E-value=0.21 Score=45.37 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=19.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
++.+|.||.|+|||+++-++...+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999976665444
No 398
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.65 E-value=0.19 Score=48.82 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=23.8
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLV 284 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv 284 (690)
..++.|.||.|+||||++..+...+ +| .|.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~--pG-~i~~ 53 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF--PN-YFYF 53 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS--TT-TEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC--CC-cEEE
Confidence 4688999999999999988776654 33 4555
No 399
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.62 E-value=0.23 Score=48.27 Aligned_cols=24 Identities=29% Similarity=0.710 Sum_probs=20.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
+.+++|.||.|+||||++..+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999988776554
No 400
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.61 E-value=0.17 Score=52.57 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.||+|+||||++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 78999999999999988887765
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.61 E-value=0.19 Score=48.48 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=17.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
-+..|.|||||||||++..+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999998766643
No 402
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.51 E-value=0.2 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.721 Sum_probs=19.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
..+..|.||+|+||||++..+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 458899999999999988766643
No 403
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.49 E-value=0.49 Score=45.41 Aligned_cols=46 Identities=26% Similarity=0.556 Sum_probs=31.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc-CChHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA-PTNAAVDNMVEKL 299 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a-~SN~AvD~l~erL 299 (690)
+.+|-|+.|+||||.+..+...| ..|.+++.+. |+....-+.+.++
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~~~~eP~~t~~g~~ir~~ 50 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL-VKDYDVIMTREPGGVPTGEEIRKI 50 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TTTSCEEEEESSTTCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HCCCCEEEeeCCCCChHHHHHHHH
Confidence 67899999999999887777666 4576776653 4444444444443
No 404
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.47 E-value=0.27 Score=50.79 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=23.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHH--cCCeEEEEcC
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQ--QGERVLVTAP 287 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~--~g~rVLv~a~ 287 (690)
+..|.||+|+||||++..+...+-. .+.+|.++..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITT 130 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEee
Confidence 7899999999999998665444322 2345555543
No 405
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.29 E-value=0.17 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=17.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
..++.||||||||+++..+...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 4799999999999977655433
No 406
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.28 E-value=0.16 Score=59.46 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=17.9
Q ss_pred CeEEEeCCCCCChhHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
...+|+||||||||+++..+..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4689999999999988766544
No 407
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.19 E-value=0.15 Score=54.79 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=19.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
..+.+|.||||+||||++..+..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999998877654
No 408
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.04 E-value=0.51 Score=52.19 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=24.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERV 282 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rV 282 (690)
.+.++.|+||+||||+...+...+-..+...
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~ 66 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPT 66 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCe
Confidence 3788999999999999998888775555444
No 409
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.02 E-value=0.13 Score=60.38 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=19.4
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
...++.||||||||+++..+...+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999877766554
No 410
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.00 E-value=0.18 Score=46.43 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=25.2
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLV 284 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv 284 (690)
..+..|.||.|+||||++..+...+ -....|.+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~ 65 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKS 65 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEE
Confidence 4688999999999999998888776 33334443
No 411
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=88.87 E-value=0.28 Score=52.31 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHhc------CC---CCeEEEeCCCCCChhHHHHHHHHHHH------HcCCeEEEEc
Q 038763 235 FDDSQKKAIALGLN------KK---RPLLIIQGPPGTGKTGLLKEIIARAV------QQGERVLVTA 286 (690)
Q Consensus 235 LN~~Q~~Av~~al~------~~---~~~~lI~GPPGTGKT~tl~~~i~~l~------~~g~rVLv~a 286 (690)
++.+|...+...+. .. .-+++..|-.|+||||+.+.+...+. ..|.+||++=
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 35667776665431 11 12566678899999999999999988 4689998874
No 412
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.86 E-value=0.25 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=21.0
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
.+..|.||+|+||||++..+...+-.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46889999999999988776666544
No 413
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.85 E-value=0.21 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=17.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.-|.||||+||||....+...+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 4678999999999887766554
No 414
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.79 E-value=0.37 Score=54.31 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHhc-CCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 235 FDDSQKKAIALGLN-KKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 235 LN~~Q~~Av~~al~-~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
.+..++++...--. ....+.+|.|+|||||||++..+...+...|..++.+
T Consensus 35 v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 35 VSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp CCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 56666766531000 0224689999999999999999988887777766655
No 415
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.78 E-value=0.2 Score=50.77 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=17.8
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEII 272 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i 272 (690)
+..|.|||||||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999887776
No 416
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.77 E-value=0.18 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
++.+|.||+|+|||+++..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 478999999999999988887654
No 417
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=88.65 E-value=0.34 Score=54.40 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhc---CCCCeEEEeCCCCCChhHHHHHHHHH
Q 038763 237 DSQKKAIALGLN---KKRPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 237 ~~Q~~Av~~al~---~~~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
+...+.+...+. ....+++|+||+|.|||+++.++...
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 344555666664 23458999999999999999888754
No 418
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=88.60 E-value=0.26 Score=64.43 Aligned_cols=32 Identities=34% Similarity=0.525 Sum_probs=23.4
Q ss_pred HHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHH
Q 038763 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 242 Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
.+..++... .-.++.||||||||+++..++..
T Consensus 1259 ll~~~l~~~-~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1259 IFYDLLNSK-RGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp HHHHHHHHT-CEEEEECSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHCC-CeEEEECCCCCCHHHHHHHHHhc
Confidence 345555554 35799999999999998776654
No 419
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=88.57 E-value=0.25 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=19.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+|.||||+||||++..+...+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 37899999999999987776654
No 420
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.47 E-value=0.16 Score=52.69 Aligned_cols=24 Identities=38% Similarity=0.610 Sum_probs=20.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.||+|||||++...++..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 478999999999999998887654
No 421
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.47 E-value=0.28 Score=48.42 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.0
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
..+..|.||.|+||||++..+...+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999987665544
No 422
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.42 E-value=0.27 Score=47.77 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQ 277 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~ 277 (690)
.-+.+|.||+|+||||.+..+...+-.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357899999999999998888776643
No 423
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.42 E-value=0.38 Score=49.47 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=24.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHH-cC-CeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQ-QG-ERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~-~g-~rVLv~a 286 (690)
..+..|.||+|+||||++..+...+-. .| .+|-++.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~ 127 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVT 127 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEE
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEe
Confidence 458899999999999988665544432 23 3454443
No 424
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.41 E-value=0.22 Score=52.42 Aligned_cols=44 Identities=16% Similarity=0.361 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 241 ~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+-+...+.. +.+.+|.||.|+||||++..++..+-.....|.+-
T Consensus 166 ~~l~~~i~~-G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 166 SFLRRAVQL-ERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHHHHT-TCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHHHHhc-CCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 334555554 46899999999999999888766543223345543
No 425
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.41 E-value=0.34 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=19.3
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+..|.|||||||||++..+...+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468899999999999877665543
No 426
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.37 E-value=0.23 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.6
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.||+|+|||+++..++..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 478999999999999998887663
No 427
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.15 E-value=0.18 Score=52.50 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 241 ~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+-+...+.. +...+|.||.|+||||++..++..+-.....|.+-.
T Consensus 162 ~~l~~~i~~-g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 162 SAIKDGIAI-GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp HHHHHHHHH-TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred hhhhhhccC-CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 345555554 468899999999999988776655432333555543
No 428
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.14 E-value=0.31 Score=51.40 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcC-CCCeEEEeCCCCCChhHHHHHHHHHHHHcCC--e--EEEEcCChHHHHHHHHHH
Q 038763 238 SQKKAIALGLNK-KRPLLIIQGPPGTGKTGLLKEIIARAVQQGE--R--VLVTAPTNAAVDNMVEKL 299 (690)
Q Consensus 238 ~Q~~Av~~al~~-~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~--r--VLv~a~SN~AvD~l~erL 299 (690)
.=.+||...+.- ...-.+|.||||+|||+++..+++++.+.+. . ++.|.....-|..+.+.+
T Consensus 160 tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~ 226 (422)
T 3ice_A 160 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 226 (422)
T ss_dssp HHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC
T ss_pred ccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh
Confidence 345666554321 2356899999999999999988888776442 2 344566666666665444
No 429
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.05 E-value=0.27 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=18.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
++.+|.||.|+||||++-.+...
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999987655443
No 430
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.86 E-value=0.63 Score=51.76 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=32.4
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEK 298 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~er 298 (690)
.+.++.|+||+||||++..+...+-..|.++.++. .|.+.+.
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld-----~D~ir~~ 414 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD-----GDVVRTH 414 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-----HHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC-----chHhhhh
Confidence 36788999999999998888888877787776665 4555443
No 431
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.58 E-value=0.29 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=21.0
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
++.+|.||+|+|||+++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999998888765
No 432
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=87.46 E-value=0.34 Score=51.05 Aligned_cols=40 Identities=33% Similarity=0.364 Sum_probs=28.1
Q ss_pred HHHHHHHhc-CCCCeEEEeCCCCCChhHHHHHHHHHHHHcC
Q 038763 240 KKAIALGLN-KKRPLLIIQGPPGTGKTGLLKEIIARAVQQG 279 (690)
Q Consensus 240 ~~Av~~al~-~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g 279 (690)
.+||...+. ....-.+|.||||||||+++..++.+..+.+
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 455554321 1233579999999999999998888877643
No 433
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.45 E-value=0.49 Score=53.27 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=32.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
..+.++.|.+|+||||+.+.+...+.+.|.+||++.
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD 362 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT 362 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEe
Confidence 347888999999999999999999999999999873
No 434
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.45 E-value=0.34 Score=46.42 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=20.1
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAV 276 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~ 276 (690)
++.+|.||.|+|||+++-++...+-
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5899999999999998866544443
No 435
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.45 E-value=0.26 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
+.+|.|++|+||||.+..+...+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 67899999999999887776654
No 436
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.20 E-value=0.3 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=18.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
+..|.|||||||||+...+...
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999987666544
No 437
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.16 E-value=0.35 Score=45.07 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=23.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCCe
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGER 281 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~r 281 (690)
+..|.||.|+||||++..++..+-..|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~ 32 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLR 32 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCc
Confidence 67899999999999988888777666543
No 438
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=87.07 E-value=1.5 Score=50.62 Aligned_cols=64 Identities=16% Similarity=-0.019 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
...+-|..++-.++.. . +.+.+.|||||-+.+--+......|..++|+|||..-+....+-+..
T Consensus 83 ~pt~VQ~~~ip~ll~G--~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDG--N--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp CCCHHHHHHHHHHHTT--S--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHHhCC--C--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHH
Confidence 5789999999888763 2 88999999999865444432233688999999999888776665544
No 439
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=86.93 E-value=0.26 Score=52.59 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHhc---------CCCCeEEEeCCCCCChhHHHHHHHHHHH------HcCCeEEEEc
Q 038763 235 FDDSQKKAIALGLN---------KKRPLLIIQGPPGTGKTGLLKEIIARAV------QQGERVLVTA 286 (690)
Q Consensus 235 LN~~Q~~Av~~al~---------~~~~~~lI~GPPGTGKT~tl~~~i~~l~------~~g~rVLv~a 286 (690)
++.+|...+..... ...-++++.|-+|+||||+.+.+...+. ..|.+||++=
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD 153 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVID 153 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 57777777764421 1112567778899999999999999988 5789998873
No 440
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=86.74 E-value=1.2 Score=51.61 Aligned_cols=64 Identities=17% Similarity=-0.016 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
...+-|..++-..+.. . +.+.+.|||||-+.+--+......|..++|+|||..-+....+-+..
T Consensus 74 ~p~~VQ~~~i~~ll~G--~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNER--C--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp CCCHHHHHHHHHHHSS--E--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCChHHHhhcccccCC--e--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHH
Confidence 4688999999877753 2 88999999999865544433334688999999999888776665544
No 441
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.89 E-value=0.53 Score=49.20 Aligned_cols=48 Identities=23% Similarity=0.129 Sum_probs=30.6
Q ss_pred HHHHHHhcC-CCCeEEEeCCCCCChhHHHHHHHHHHHHcC-CeEEEEcCCh
Q 038763 241 KAIALGLNK-KRPLLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTAPTN 289 (690)
Q Consensus 241 ~Av~~al~~-~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g-~rVLv~a~SN 289 (690)
.|+...+.- ......|.||+|+||||++..++..+ ... ..|.++....
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~-~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA-SADIIVLALIGERG 109 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCCH
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC-CCCEEEEEEecccH
Confidence 455544321 34689999999999999976666653 322 2455555543
No 442
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.63 E-value=0.5 Score=50.55 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHH
Q 038763 236 DDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 236 N~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
+...++++..+... ..+..|.||+|+||||++-.+.-
T Consensus 55 ~~~i~~~L~~~~~~-~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 55 NSAISDALKEIDSS-VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHHC-CEEEEEEECTTSSHHHHHHHHHT
T ss_pred chhhhhhhhhcccC-CeEEEEECCCCCcHHHHHHHHhC
Confidence 44556677766654 46889999999999999876654
No 443
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=85.07 E-value=1.3 Score=51.58 Aligned_cols=64 Identities=20% Similarity=0.075 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
...+-|..++-..+.. . +.+...|||||-+.+-.+......|..++|+|||..-+....+-+..
T Consensus 79 ~Pt~VQ~~~ip~LlqG--~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEG--K--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp CCCHHHHHHHHHHHTT--S--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHhhcccccCC--c--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHH
Confidence 4689999999887764 2 88999999999876554433334688999999999888776665544
No 444
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.94 E-value=0.18 Score=50.30 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=19.6
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+.+|.|++|+||||.+..+...+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999886665543
No 445
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=84.80 E-value=0.75 Score=51.49 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=26.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcC-CeEEEEc
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQG-ERVLVTA 286 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g-~rVLv~a 286 (690)
+.+|.|+|||||||++..+...+-..| .++.++.
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 578999999999998888887777666 5655443
No 446
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.65 E-value=0.51 Score=42.29 Aligned_cols=20 Identities=30% Similarity=0.753 Sum_probs=16.9
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 58899999999998877663
No 447
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=84.64 E-value=0.85 Score=44.53 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=29.7
Q ss_pred eEEEeCC-CCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 253 LLIIQGP-PGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 253 ~~lI~GP-PGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
..+|.|. +|+|||++.+.+++.+.++|.+|...=
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 4678887 899999999999999999998888754
No 448
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=84.64 E-value=0.76 Score=49.76 Aligned_cols=51 Identities=24% Similarity=0.334 Sum_probs=35.5
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHc-C-CeE-EEEcCChHHHHHHHHHHHhc
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQ-G-ERV-LVTAPTNAAVDNMVEKLSDV 302 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~-g-~rV-Lv~a~SN~AvD~l~erL~~~ 302 (690)
.-.+|.||||+|||+++..++.+.... + -.| ..+..-..-+.++.+.+...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~ 205 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDS 205 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhc
Confidence 468999999999999999999887653 2 222 23444555566677666543
No 449
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=84.58 E-value=0.51 Score=45.95 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=22.8
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~ 285 (690)
+.++.|.||.|+||||++..+. -+..+ ..+|.+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILG-LLDAPTEGKVFLE 64 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHh-cCCCCCceEEEEC
Confidence 4689999999999999875443 33332 2356553
No 450
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.56 E-value=0.5 Score=44.61 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=16.9
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.||+|+||||++..++.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 68899999999998876654
No 451
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=84.52 E-value=1.7 Score=50.38 Aligned_cols=64 Identities=16% Similarity=-0.045 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHHh
Q 038763 234 TFDDSQKKAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPTNAAVDNMVEKLSD 301 (690)
Q Consensus 234 ~LN~~Q~~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~SN~AvD~l~erL~~ 301 (690)
...+-|..++-..+.. . +.+.+-|||||-+.+--+......|..++|+|||..-+....+-+..
T Consensus 111 rP~~VQ~~~ip~Ll~G--~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLG--N--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp CCCHHHHHHHHHHHTT--E--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHhcC--C--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHH
Confidence 5788999999877753 2 88999999999865444433233688999999999888666655543
No 452
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.50 E-value=0.52 Score=45.06 Aligned_cols=23 Identities=43% Similarity=0.761 Sum_probs=19.0
Q ss_pred CeEEEeCCCCCChhHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
.-.+|.|+||+|||+++..++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45799999999999988776643
No 453
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=84.43 E-value=0.59 Score=45.97 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=19.1
Q ss_pred CCeEEEeCCCCCChhHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
+.++.|.||.|+||||++..+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999998765543
No 454
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=84.34 E-value=0.59 Score=45.86 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~ 285 (690)
+.++.|.||.|+||||++..+. -+..+ ...|.+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~-Gl~~p~~G~I~~~ 65 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIG-CLDKPTEGEVYID 65 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT-TSSCCSEEEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHh-cCCCCCceEEEEC
Confidence 4689999999999998765443 33322 2355554
No 455
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.18 E-value=0.56 Score=45.38 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=23.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~a 286 (690)
+.++.|.||.|+||||++..+.-. ..+ ...|.+..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl-~~p~~G~I~~~g 70 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY-LKPLKGEIIYNG 70 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCCCCeEEEECC
Confidence 468899999999999987655433 222 23566543
No 456
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=84.09 E-value=0.6 Score=61.77 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEcCC-hHHHHHHHHHHH
Q 038763 241 KAIALGLNKKRPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTAPT-NAAVDNMVEKLS 300 (690)
Q Consensus 241 ~Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a~S-N~AvD~l~erL~ 300 (690)
..+...+....| .++.||||||||.++...+..+ .+..++.+.+| ...++.+...+.
T Consensus 1295 ~ll~~ll~~~~p-vLL~GptGtGKT~li~~~L~~l--~~~~~~~infS~~Tta~~l~~~~e 1352 (3245)
T 3vkg_A 1295 DVLHAWLSEHRP-LILCGPPGSGKTMTLTSTLRAF--PDFEVVSLNFSSATTPELLLKTFD 1352 (3245)
T ss_dssp HHHHHHHHTTCC-CEEESSTTSSHHHHHHHHGGGC--TTEEEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCc-EEEECCCCCCHHHHHHHHHHhC--CCCceEEEEeeCCCCHHHHHHHHh
Confidence 345555665545 5889999999999887766543 23344444333 233445554443
No 457
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=84.00 E-value=0.59 Score=46.06 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=22.8
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEE
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVT 285 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~ 285 (690)
.++.|.||.|+||||++..+.-. ..+ ...|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~i~~~ 58 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI-VKPDRGEVRLN 58 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS-SCCSEEEEEET
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-CCCCceEEEEC
Confidence 58899999999999987655433 222 2356554
No 458
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=83.81 E-value=0.52 Score=44.27 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=17.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
..+|.||+|+||||++..++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4688999999999988766543
No 459
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=83.71 E-value=0.58 Score=42.61 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=17.0
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q 038763 253 LLIIQGPPGTGKTGLLKEII 272 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i 272 (690)
..+|.|+||+|||+++..++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46889999999999887765
No 460
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=83.61 E-value=0.64 Score=41.75 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=16.7
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 58899999999998766654
No 461
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=83.61 E-value=0.67 Score=46.33 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=23.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~ 285 (690)
+.++.|.||.|+||||++..+.-. ..+ ..+|.+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl-~~p~~G~i~~~ 66 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL-EKPSEGAIIVN 66 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCCCCcEEEEC
Confidence 468999999999999987655433 222 2356654
No 462
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=83.48 E-value=0.65 Score=50.63 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=23.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHHcCC
Q 038763 253 LLIIQGPPGTGKTGLLKEIIARAVQQGE 280 (690)
Q Consensus 253 ~~lI~GPPGTGKT~tl~~~i~~l~~~g~ 280 (690)
+.++.|+||+||||++..+...+-..+.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 6789999999999999888877765543
No 463
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.44 E-value=0.61 Score=42.08 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=17.0
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 57889999999998877664
No 464
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=83.19 E-value=0.72 Score=45.73 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=24.7
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH-HHc-CCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA-VQQ-GERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l-~~~-g~rVLv~a 286 (690)
+.++.|.||.|+||||++..+.-.+ ..+ ...|.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 66 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG 66 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECC
Confidence 4689999999999999887665431 221 23566643
No 465
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=83.15 E-value=0.72 Score=46.15 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~ 285 (690)
+.++.|.||.|+||||++..+.-. ..+ ...|.+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl-~~p~~G~I~~~ 84 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL-EDFDEGEIIID 84 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEET
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC-CCCCCcEEEEC
Confidence 468999999999999987654433 332 2356554
No 466
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=83.10 E-value=0.68 Score=46.08 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=23.6
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+.++.|.||.|+||||++..+.-.+--....|.+.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 67 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 46899999999999998765543321122356654
No 467
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=83.02 E-value=0.69 Score=46.61 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+.++.|.||.|+||||++..+.-.+--....|.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G 69 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN 69 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECC
Confidence 468999999999999987655433221223566544
No 468
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=83.02 E-value=0.76 Score=46.03 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=24.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHH-HHc-CCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARA-VQQ-GERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l-~~~-g~rVLv~a 286 (690)
+.++.|.||.|+||||++..+.-.+ ..+ ..+|.+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 83 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 4689999999999999887665442 121 23666654
No 469
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.90 E-value=0.71 Score=45.44 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=23.0
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~ 285 (690)
+.++.|.||.|+||||++..+.-. ..+ ...|.+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~~ 66 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL-VRAQKGKIIFN 66 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CCCCCceEEEC
Confidence 468999999999999987654432 222 2355553
No 470
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.89 E-value=0.74 Score=45.82 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=24.2
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+.++.|.||.|+||||++..+.-.+--...+|.+..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 76 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 76 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 468999999999999987655433211223666643
No 471
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=82.80 E-value=0.74 Score=44.96 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=19.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIAR 274 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~ 274 (690)
+.++.|.||.|+||||++..+.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999987655433
No 472
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=82.78 E-value=0.66 Score=43.22 Aligned_cols=22 Identities=45% Similarity=0.800 Sum_probs=18.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
.-.+|.|++|+|||+++..+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4579999999999998876653
No 473
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=82.75 E-value=0.74 Score=45.64 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+.++.|.||.|+||||++..+.-.+--. .+|.+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~ 59 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFA 59 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEEC
Confidence 4689999999999999886654332212 355553
No 474
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=82.73 E-value=1 Score=50.21 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.2
Q ss_pred CeEEEeCCCCCChhHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+..|+|++|.||||++.++..
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999998887764
No 475
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.68 E-value=0.66 Score=45.77 Aligned_cols=36 Identities=14% Similarity=0.340 Sum_probs=24.3
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+.++.|.||.|+||||++..+.-.+--...+|.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 63 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 468999999999999987665433221224666543
No 476
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=82.57 E-value=0.73 Score=44.01 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.5
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
.+..|.||+|||||++...+...+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 588999999999999887777665
No 477
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=82.53 E-value=0.7 Score=42.21 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=16.9
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68899999999998877653
No 478
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=82.52 E-value=0.77 Score=45.82 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=24.4
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+.++.|.||.|+||||++..+...+ .....|.+.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~G~I~i~ 79 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY-DAEGDIKIG 79 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS-CCEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC-CCCeEEEEC
Confidence 4689999999999999887665433 233456654
No 479
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=82.35 E-value=0.94 Score=41.33 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=18.1
Q ss_pred CCeEEEeCCCCCChhHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEII 272 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i 272 (690)
..-.+|.|+||+|||+++..++
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3457899999999999887664
No 480
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=82.33 E-value=0.69 Score=41.41 Aligned_cols=20 Identities=35% Similarity=0.689 Sum_probs=17.0
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|++|+|||+++..++.
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68899999999999776654
No 481
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=82.32 E-value=1.1 Score=47.03 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=21.4
Q ss_pred HHHHHhcCCCCeEEEeCCCCCChhHHHHHHH
Q 038763 242 AIALGLNKKRPLLIIQGPPGTGKTGLLKEII 272 (690)
Q Consensus 242 Av~~al~~~~~~~lI~GPPGTGKT~tl~~~i 272 (690)
.+...+. ..++.|.||||+||||++-.++
T Consensus 208 ~L~~~~~--G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 208 PLEEALT--GRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHT--TSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhcC--CCEEEEECCCCccHHHHHHHHh
Confidence 3444443 3589999999999999886555
No 482
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.32 E-value=0.77 Score=45.43 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=23.5
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEE
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVT 285 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~ 285 (690)
+.++.|.||.|+||||++..+...+--....|.+-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~ 69 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 69 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 46899999999999998765543321122356553
No 483
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=82.15 E-value=0.73 Score=42.16 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=16.9
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 11 i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68899999999998876653
No 484
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.97 E-value=0.82 Score=45.90 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=23.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~a 286 (690)
+.++.|.||.|+||||++..+.-. ..+ ...|.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl-~~p~~G~I~~~g 80 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL-YQPTGGKVLLDG 80 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCCCCCEEEECC
Confidence 468999999999999987654433 332 23666543
No 485
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.93 E-value=0.79 Score=41.30 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=16.8
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57889999999998876653
No 486
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=81.83 E-value=0.69 Score=41.79 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=16.7
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 57889999999998877653
No 487
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=81.80 E-value=0.77 Score=41.25 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=16.7
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 7 i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 58889999999998776653
No 488
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=81.68 E-value=0.79 Score=41.42 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=16.7
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57899999999998876653
No 489
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.65 E-value=0.64 Score=46.71 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=18.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIARAV 276 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~~l~ 276 (690)
..|.||+|+||||++-.+.....
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 57889999999999887776553
No 490
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=81.65 E-value=0.84 Score=45.34 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=18.8
Q ss_pred CCeEEEeCCCCCChhHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
+.++.|.||.|+||||++..+.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999998765443
No 491
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=81.57 E-value=0.87 Score=45.57 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=23.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHc-CCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQ-GERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~-g~rVLv~a 286 (690)
+.++.|.||.|+||||++..+.- +..+ ...|.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G-l~~p~~G~I~~~g 68 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDG 68 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEETT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC-CCCCCCcEEEECC
Confidence 46899999999999998765443 2322 23566643
No 492
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=81.56 E-value=0.8 Score=41.65 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=16.2
Q ss_pred EEEeCCCCCChhHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEII 272 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i 272 (690)
.+|.|+||+|||+++-.++
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 6889999999999876654
No 493
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=81.54 E-value=0.8 Score=41.33 Aligned_cols=20 Identities=20% Similarity=0.548 Sum_probs=16.9
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 9 i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 68889999999998877654
No 494
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.51 E-value=0.86 Score=45.64 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=24.1
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+.++.|.||.|+||||++..+.-.+--....|.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 568999999999999987655433222233565543
No 495
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=81.50 E-value=0.89 Score=47.63 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=18.9
Q ss_pred CCeEEEeCCCCCChhHHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~ 273 (690)
+.++.|.||.|+||||++..+.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 46899999999999998765543
No 496
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=81.44 E-value=0.68 Score=43.00 Aligned_cols=20 Identities=45% Similarity=0.836 Sum_probs=16.9
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEIIA 273 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i~ 273 (690)
.+|.|+||+|||+++..++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68899999999998876654
No 497
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=81.35 E-value=0.88 Score=45.93 Aligned_cols=36 Identities=28% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCeEEEeCCCCCChhHHHHHHHHHHHHcCCeEEEEc
Q 038763 251 RPLLIIQGPPGTGKTGLLKEIIARAVQQGERVLVTA 286 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i~~l~~~g~rVLv~a 286 (690)
+.++.|.||.|+||||++..+.-.+--....|.+..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 82 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECC
Confidence 468999999999999987654433211123566543
No 498
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=81.32 E-value=0.89 Score=47.80 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=18.7
Q ss_pred CeEEEeCCCCCChhHHHHHHHHHH
Q 038763 252 PLLIIQGPPGTGKTGLLKEIIARA 275 (690)
Q Consensus 252 ~~~lI~GPPGTGKT~tl~~~i~~l 275 (690)
++.+|.||.|+||||++-.+...+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999998874444343
No 499
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=81.22 E-value=0.9 Score=47.52 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=18.6
Q ss_pred CCeEEEeCCCCCChhHHHHHHH
Q 038763 251 RPLLIIQGPPGTGKTGLLKEII 272 (690)
Q Consensus 251 ~~~~lI~GPPGTGKT~tl~~~i 272 (690)
..++.|.||.|+||||++..+.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 4689999999999999876544
No 500
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=81.18 E-value=0.83 Score=41.32 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=16.0
Q ss_pred EEEeCCCCCChhHHHHHHH
Q 038763 254 LIIQGPPGTGKTGLLKEII 272 (690)
Q Consensus 254 ~lI~GPPGTGKT~tl~~~i 272 (690)
.+|.|+||+|||+++..+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999876654
Done!