Query 038767
Match_columns 336
No_of_seqs 219 out of 1407
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03215 ascorbic acid mannose 100.0 1.3E-37 2.8E-42 280.3 24.3 267 14-317 1-354 (373)
2 TIGR01640 F_box_assoc_1 F-box 99.5 1.4E-12 3.1E-17 113.4 17.8 158 103-260 14-189 (230)
3 PF03478 DUF295: Protein of un 99.0 4.5E-10 9.7E-15 73.9 4.9 43 252-294 1-53 (54)
4 PHA02713 hypothetical protein; 98.8 1.2E-06 2.7E-11 85.8 21.0 147 151-317 367-541 (557)
5 PF12937 F-box-like: F-box-lik 98.7 5E-09 1.1E-13 66.9 1.9 36 17-52 1-36 (47)
6 PF08268 FBA_3: F-box associat 98.7 2.6E-07 5.6E-12 72.7 11.8 105 179-283 2-118 (129)
7 PF00646 F-box: F-box domain; 98.5 2.5E-08 5.5E-13 64.0 -0.0 37 16-52 2-38 (48)
8 smart00256 FBOX A Receptor for 98.4 1.6E-07 3.4E-12 57.9 1.3 33 20-52 1-33 (41)
9 KOG4441 Proteins containing BT 98.3 0.00012 2.6E-09 71.9 20.8 203 68-286 302-531 (571)
10 PHA02790 Kelch-like protein; P 98.3 0.0001 2.2E-09 71.2 19.1 175 68-255 288-477 (480)
11 PHA02713 hypothetical protein; 98.3 5.2E-05 1.1E-09 74.5 17.3 105 151-258 432-543 (557)
12 KOG4441 Proteins containing BT 98.2 6.2E-05 1.3E-09 73.9 16.5 107 149-258 442-556 (571)
13 PF07734 FBA_1: F-box associat 98.1 2.8E-05 6.1E-10 63.8 9.9 81 179-259 2-94 (164)
14 PHA03098 kelch-like protein; P 98.0 0.00046 9.9E-09 67.7 17.4 109 151-260 406-523 (534)
15 PLN02153 epithiospecifier prot 97.8 0.0056 1.2E-07 56.4 20.5 109 151-259 101-236 (341)
16 PHA03098 kelch-like protein; P 97.8 0.002 4.2E-08 63.3 18.1 146 152-317 359-519 (534)
17 TIGR03548 mutarot_permut cycli 97.8 0.0013 2.8E-08 60.1 15.5 106 152-259 89-205 (323)
18 PLN02153 epithiospecifier prot 97.7 0.016 3.4E-07 53.5 21.1 106 152-259 160-295 (341)
19 PRK14131 N-acetylneuraminic ac 97.6 0.002 4.4E-08 60.2 14.6 108 152-260 107-260 (376)
20 PHA02790 Kelch-like protein; P 97.6 0.0019 4.1E-08 62.5 14.7 106 152-259 288-395 (480)
21 TIGR03547 muta_rot_YjhT mutatr 97.6 0.003 6.5E-08 58.3 15.3 108 152-260 86-239 (346)
22 PLN02193 nitrile-specifier pro 97.5 0.0044 9.4E-08 59.8 15.3 109 152-260 245-363 (470)
23 PLN02193 nitrile-specifier pro 97.3 0.022 4.8E-07 55.0 18.4 107 152-260 295-422 (470)
24 TIGR03548 mutarot_permut cycli 97.0 0.022 4.7E-07 52.1 14.0 127 162-294 52-192 (323)
25 KOG2120 SCF ubiquitin ligase, 96.8 0.00047 1E-08 60.6 1.5 37 16-52 97-133 (419)
26 TIGR03547 muta_rot_YjhT mutatr 96.1 0.057 1.2E-06 49.8 10.4 101 159-259 39-187 (346)
27 KOG1230 Protein containing rep 95.4 0.22 4.7E-06 46.0 10.9 82 177-259 80-173 (521)
28 PRK14131 N-acetylneuraminic ac 95.2 0.15 3.2E-06 47.8 9.9 100 160-259 61-208 (376)
29 KOG1230 Protein containing rep 94.0 3.7 8E-05 38.2 15.1 130 153-286 100-251 (521)
30 PF13570 PQQ_3: PQQ-like domai 92.6 0.18 3.8E-06 30.4 3.2 28 174-202 13-40 (40)
31 KOG0379 Kelch repeat-containin 92.6 1.6 3.4E-05 42.3 11.4 106 152-259 140-260 (482)
32 KOG0379 Kelch repeat-containin 92.0 5.2 0.00011 38.8 14.2 105 153-260 90-210 (482)
33 PF07646 Kelch_2: Kelch motif; 91.9 0.34 7.4E-06 30.6 4.0 39 221-259 7-49 (49)
34 PF06433 Me-amine-dh_H: Methyl 91.3 7.6 0.00016 35.5 13.3 121 175-316 186-327 (342)
35 COG2706 3-carboxymuconate cycl 91.1 12 0.00025 34.1 17.3 136 175-335 193-344 (346)
36 PF01344 Kelch_1: Kelch motif; 90.6 1.1 2.4E-05 27.7 5.5 40 220-259 6-47 (47)
37 PF13964 Kelch_6: Kelch motif 90.5 0.7 1.5E-05 29.2 4.6 35 176-210 5-45 (50)
38 PF13964 Kelch_6: Kelch motif 89.6 0.63 1.4E-05 29.4 3.8 40 220-259 6-47 (50)
39 KOG2997 F-box protein FBX9 [Ge 89.2 0.15 3.2E-06 45.5 0.7 36 17-52 107-147 (366)
40 smart00564 PQQ beta-propeller 87.6 1.5 3.2E-05 24.7 4.1 25 179-204 3-27 (33)
41 PF08450 SGL: SMP-30/Gluconola 87.5 10 0.00022 32.9 11.2 72 177-258 4-78 (246)
42 KOG4693 Uncharacterized conser 87.4 2.7 5.9E-05 36.8 7.2 100 158-257 164-285 (392)
43 KOG2502 Tub family proteins [G 85.7 0.62 1.3E-05 42.1 2.5 39 15-53 43-89 (355)
44 PF01344 Kelch_1: Kelch motif; 83.4 3.1 6.7E-05 25.6 4.4 34 176-209 5-44 (47)
45 PF10282 Lactonase: Lactonase, 82.4 40 0.00086 31.0 13.2 114 140-256 206-332 (345)
46 PF07646 Kelch_2: Kelch motif; 81.8 4 8.7E-05 25.5 4.5 34 177-210 6-47 (49)
47 PF10282 Lactonase: Lactonase, 81.6 43 0.00093 30.7 19.2 138 175-334 194-344 (345)
48 KOG0281 Beta-TrCP (transducin 81.5 0.73 1.6E-05 41.6 1.2 35 18-52 76-114 (499)
49 PF13859 BNR_3: BNR repeat-lik 78.3 9.9 0.00021 34.5 7.5 56 203-259 160-217 (310)
50 PF07893 DUF1668: Protein of u 77.3 60 0.0013 29.9 12.6 87 178-268 113-231 (342)
51 KOG4693 Uncharacterized conser 77.3 13 0.00029 32.7 7.5 82 153-234 218-311 (392)
52 KOG4341 F-box protein containi 77.2 1.1 2.4E-05 41.7 1.1 34 19-52 74-107 (483)
53 PF13418 Kelch_4: Galactose ox 76.0 5.4 0.00012 24.8 3.8 35 225-259 12-48 (49)
54 COG2706 3-carboxymuconate cycl 75.5 16 0.00034 33.3 7.8 75 181-256 253-331 (346)
55 PF01011 PQQ: PQQ enzyme repea 74.0 5.1 0.00011 23.6 3.1 24 183-207 1-26 (38)
56 PRK11138 outer membrane biogen 71.9 87 0.0019 29.3 12.9 29 175-204 328-356 (394)
57 PF13360 PQQ_2: PQQ-like domai 69.5 68 0.0015 27.1 16.4 50 157-207 94-148 (238)
58 PRK11028 6-phosphogluconolacto 68.5 91 0.002 28.1 13.0 70 184-256 3-74 (330)
59 KOG0274 Cdc4 and related F-box 67.5 1.6 3.4E-05 42.9 -0.4 38 15-52 106-143 (537)
60 TIGR03032 conserved hypothetic 65.3 23 0.00049 32.1 6.5 54 175-234 205-260 (335)
61 PF13013 F-box-like_2: F-box-l 62.0 5.2 0.00011 30.2 1.6 43 8-50 13-58 (109)
62 PF07893 DUF1668: Protein of u 61.4 1.3E+02 0.0029 27.6 12.0 117 181-317 75-215 (342)
63 PF02191 OLF: Olfactomedin-lik 59.7 1.2E+02 0.0026 26.6 10.3 76 176-251 72-159 (250)
64 PF03022 MRJP: Major royal jel 58.0 30 0.00066 31.0 6.2 84 221-317 7-104 (287)
65 PF09372 PRANC: PRANC domain; 57.2 7 0.00015 28.6 1.6 25 15-39 70-94 (97)
66 PF13415 Kelch_3: Galactose ox 56.7 17 0.00036 22.6 3.1 34 226-259 2-38 (49)
67 KOG0289 mRNA splicing factor [ 56.0 1.9E+02 0.004 27.5 11.8 83 175-262 392-476 (506)
68 PRK11138 outer membrane biogen 51.9 2E+02 0.0043 26.8 11.0 57 176-233 250-311 (394)
69 cd00260 Sialidase Sialidases o 51.4 1.1E+02 0.0024 27.9 9.0 81 178-258 152-241 (351)
70 TIGR03300 assembly_YfgL outer 50.6 1.8E+02 0.0038 26.8 10.3 58 175-233 234-296 (377)
71 PTZ00334 trans-sialidase; Prov 49.3 61 0.0013 33.3 7.2 77 178-255 266-349 (780)
72 PRK11028 6-phosphogluconolacto 48.2 2.1E+02 0.0045 25.8 18.5 65 182-248 45-112 (330)
73 COG3055 Uncharacterized protei 47.0 73 0.0016 29.4 6.6 77 158-234 67-155 (381)
74 COG4257 Vgb Streptogramin lyas 46.6 2.2E+02 0.0047 25.6 11.2 62 153-214 256-318 (353)
75 PF13360 PQQ_2: PQQ-like domai 43.7 1.9E+02 0.0042 24.2 12.3 31 176-207 70-102 (238)
76 PTZ00486 apyrase Superfamily; 42.7 89 0.0019 28.8 6.5 29 175-203 117-145 (352)
77 TIGR03300 assembly_YfgL outer 41.3 2.5E+02 0.0055 25.8 9.8 29 175-204 313-341 (377)
78 smart00612 Kelch Kelch domain. 41.3 39 0.00084 20.0 3.0 20 240-259 15-34 (47)
79 COG3386 Gluconolactonase [Carb 40.8 2.8E+02 0.0061 25.1 10.4 30 182-211 36-65 (307)
80 PF08309 LVIVD: LVIVD repeat; 37.9 89 0.0019 19.0 4.1 27 176-203 5-31 (42)
81 PF07762 DUF1618: Protein of u 37.0 1.9E+02 0.0041 22.1 7.9 66 194-259 7-97 (131)
82 cd00216 PQQ_DH Dehydrogenases 37.0 3.3E+02 0.0072 26.4 10.1 55 177-234 401-457 (488)
83 PF06079 Apyrase: Apyrase; In 36.6 1.2E+02 0.0027 27.1 6.3 58 175-232 56-117 (291)
84 KOG0321 WD40 repeat-containing 36.5 1.7E+02 0.0038 29.1 7.7 79 182-271 64-147 (720)
85 COG3055 Uncharacterized protei 35.7 2.5E+02 0.0055 26.0 8.2 35 225-259 228-266 (381)
86 KOG0649 WD40 repeat protein [G 35.7 2.3E+02 0.0049 24.9 7.5 20 183-202 22-41 (325)
87 smart00284 OLF Olfactomedin-li 35.6 3.1E+02 0.0067 24.2 10.2 76 176-251 77-164 (255)
88 PF08450 SGL: SMP-30/Gluconola 35.3 2.8E+02 0.0061 23.6 14.7 70 182-254 51-128 (246)
89 PRK04043 tolB translocation pr 34.9 4E+02 0.0088 25.3 13.4 64 193-259 213-276 (419)
90 KOG1332 Vesicle coat complex C 32.6 3.5E+02 0.0075 23.8 8.2 128 153-284 82-240 (299)
91 PLN02772 guanylate kinase 31.8 3E+02 0.0065 26.0 8.3 69 175-245 27-105 (398)
92 KOG3926 F-box proteins [Amino 31.7 28 0.0006 30.7 1.5 32 14-45 199-231 (332)
93 TIGR02276 beta_rpt_yvtn 40-res 31.7 82 0.0018 18.2 3.3 22 182-203 3-24 (42)
94 TIGR01640 F_box_assoc_1 F-box 31.2 3.2E+02 0.007 23.0 11.0 61 194-254 71-132 (230)
95 PF03055 RPE65: Retinal pigmen 31.1 4.4E+02 0.0096 25.5 9.9 74 175-249 123-204 (486)
96 COG1520 FOG: WD40-like repeat 30.3 4.4E+02 0.0095 24.3 9.9 29 178-207 64-94 (370)
97 PF02897 Peptidase_S9_N: Proly 28.5 4.9E+02 0.011 24.3 18.5 83 162-246 268-357 (414)
98 COG4257 Vgb Streptogramin lyas 28.3 3.4E+02 0.0075 24.4 7.5 52 182-233 243-294 (353)
99 KOG0315 G-protein beta subunit 26.8 2.9E+02 0.0064 24.3 6.8 68 175-245 127-196 (311)
100 cd08982 GH43_3 Glycosyl hydrol 25.3 4E+02 0.0087 23.8 8.0 78 155-233 25-109 (295)
101 smart00135 LY Low-density lipo 24.2 1.3E+02 0.0027 17.2 3.2 23 180-202 18-40 (43)
102 PF06058 DCP1: Dcp1-like decap 23.8 98 0.0021 23.8 3.2 26 238-265 27-52 (122)
103 PF14339 DUF4394: Domain of un 22.8 1.1E+02 0.0025 26.5 3.7 28 180-208 36-63 (236)
104 TIGR02658 TTQ_MADH_Hv methylam 22.2 6.4E+02 0.014 23.4 12.3 106 182-294 205-328 (352)
105 KOG0645 WD40 repeat protein [G 21.9 5.8E+02 0.013 22.8 12.5 106 152-261 84-194 (312)
No 1
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=100.00 E-value=1.3e-37 Score=280.29 Aligned_cols=267 Identities=16% Similarity=0.194 Sum_probs=180.3
Q ss_pred cCCCCCCcHHHHHHHHHcC-Ccchhccccccchhhhhcccc-----CCCCcceEEEEe---CCeEEEEeC---------C
Q 038767 14 RRSRSDLPLTIINLIVSRL-YVVYQIRFRAVCKRWRSVDIQ-----YRDKFTWLMGYN---SHSCYLYDP---------C 75 (336)
Q Consensus 14 ~~~Ws~LP~dll~~Il~rL-p~~dl~rfr~VCk~Wr~~~~~-----~~~~~P~ll~~~---~~~~~~~~p---------~ 75 (336)
+.+|++||+|||+.|..|| ...|++|||+||++||+++.. +.++.||+++.. .......++ .
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 80 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSETLTDDRSYISRPGAFLS 80 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCcccccccccCcccCCCCccccccccccccceee
Confidence 3679999999999999999 579999999999999999974 123447776442 110000111 0
Q ss_pred CCcEEEEeccCCCccccCCCeeEEecCCeEEEec--------------cCceeeCCCCCc----cce----eEEEe-ecC
Q 038767 76 HKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEG--------------EKNIINLPVWRE----FSI----AKATF-SAT 132 (336)
Q Consensus 76 ~~~~~~~~~~~~P~~~~~~~~~~~s~~GwL~~~~--------------T~~~~~LP~~~~----~~~----~~~~~-s~~ 132 (336)
....+++++ | .++++|||+..+ |+..+.+|+... +.+ +...+ ...
T Consensus 81 ~~~~~r~~~---~---------~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~ 148 (373)
T PLN03215 81 RAAFFRVTL---S---------SSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWA 148 (373)
T ss_pred eeEEEEeec---C---------CCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecc
Confidence 012233332 2 135688888765 455555554321 100 00000 000
Q ss_pred ------C------------CC-CCeEEEEEEccCCceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCCC
Q 038767 133 ------P------------VS-PDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLD 193 (336)
Q Consensus 133 ------p------------~~-~~~~v~~~~~~~~~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~g 193 (336)
+ .. .+++++++.. +|++ ++|+ +++|+.++.. ...+.|+++++|+||+++.. |
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~-~g~l---~~w~--~~~Wt~l~~~--~~~~~DIi~~kGkfYAvD~~-G 219 (373)
T PLN03215 149 KRRETRPGYQRSALVKVKEGDNHRDGVLGIGR-DGKI---NYWD--GNVLKALKQM--GYHFSDIIVHKGQTYALDSI-G 219 (373)
T ss_pred cccccccceeEEEEEEeecCCCcceEEEEEee-cCcE---eeec--CCeeeEccCC--CceeeEEEEECCEEEEEcCC-C
Confidence 0 01 1344555543 4544 6676 6899998742 24599999999999999988 9
Q ss_pred cEEEEEecCCceeeecCCC---Cc--c-cceeeEEEeCCcEEEEEEEec---------------CcceEEEEeecCCCce
Q 038767 194 AIVAFNVASQNWEILPYPP---SI--L-FMYKYLTEYDGSLLILAKVVN---------------SSGYRVFTLNRSQMDW 252 (336)
Q Consensus 194 ~i~~~Dl~~~~~~~i~~p~---p~--~-~~~~~Lve~~G~LllV~~~~~---------------~~~~~V~~ld~~~~~W 252 (336)
.++++|.+.+ .+.+..+. +. + ....||||++|+|+||.+... ...|+|||+|.+..+|
T Consensus 220 ~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~W 298 (373)
T PLN03215 220 IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKW 298 (373)
T ss_pred eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcE
Confidence 9999995422 12221110 11 1 245899999999999999631 1479999999999999
Q ss_pred EEecccCCeEEEeeCCceEEeecC--CC----eEEEEEeccCCcEEEecCcccccccCccccCCCcccccc
Q 038767 253 FEIECLDDRALFMGASCLWWVPVE--KG----CAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRI 317 (336)
Q Consensus 253 ~~v~~Lg~~alFlg~~~s~~~~a~--~G----~IYf~~~~~~~~~vy~~~~~~~~~~~~~~~~~g~~~~~~ 317 (336)
++|++|||+|||+|.++++++++. +| ||||++ +....||+ |+||+..+..
T Consensus 299 veV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtd--d~~~~v~~-------------~~dg~~~~~~ 354 (373)
T PLN03215 299 MEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTE--DTMPKVFK-------------LDNGNGSSIE 354 (373)
T ss_pred EEecccCCeEEEEECCccEEEecCCCCCccCCEEEEEC--CCcceEEE-------------CCCCCccceE
Confidence 999999999999999999999884 34 999998 45667999 9999977664
No 2
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.51 E-value=1.4e-12 Score=113.42 Aligned_cols=158 Identities=17% Similarity=0.286 Sum_probs=108.9
Q ss_pred CeEEEec--cCceeeCCCCCcc---c-eeEEEeecCCCCCCeEEEEEEccC--CceEEEEEEecCCCCeeeeeeeCCccc
Q 038767 103 GWVLFEG--EKNIINLPVWREF---S-IAKATFSATPVSPDCVIFVIWVGV--MEISCISICRPGDTTWTELRFQDNYRY 174 (336)
Q Consensus 103 GwL~~~~--T~~~~~LP~~~~~---~-~~~~~~s~~p~~~~~~v~~~~~~~--~~~~~v~~~~~g~~~W~~~~~~~~~~~ 174 (336)
..++++| ||+.+.||+.... . ....+|..+|.+.++.|+.+.... .....+.++..++++|+.+...+....
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 4556666 9999999876531 1 112455556666788887764321 122456888999999999874322111
Q ss_pred -cccEEEeCCeEEEEeeCCC-----cEEEEEecCCcee-eecCCCCcc--cceeeEEEeCCcEEEEEEEecCcceEEEEe
Q 038767 175 -VKNMVRADGFLYCSFFSLD-----AIVAFNVASQNWE-ILPYPPSIL--FMYKYLTEYDGSLLILAKVVNSSGYRVFTL 245 (336)
Q Consensus 175 -~~d~v~~~G~~Y~l~~~~g-----~i~~~Dl~~~~~~-~i~~p~p~~--~~~~~Lve~~G~LllV~~~~~~~~~~V~~l 245 (336)
....++.||.+|++..... .|++||+++|+|+ .++.|.... .....|++.+|+|.++........++||.|
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl 173 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVL 173 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEEEE
Confidence 3348899999999986411 6999999999999 476553221 234579999999999987433356999999
Q ss_pred ec-CCCceEEecccCC
Q 038767 246 NR-SQMDWFEIECLDD 260 (336)
Q Consensus 246 d~-~~~~W~~v~~Lg~ 260 (336)
++ +..+|+|..+++.
T Consensus 174 ~d~~~~~W~k~~~i~~ 189 (230)
T TIGR01640 174 NDAGKQEWSKLFTVPI 189 (230)
T ss_pred CCCCCCceeEEEEEcC
Confidence 75 4567999988874
No 3
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=99.02 E-value=4.5e-10 Score=73.94 Aligned_cols=43 Identities=33% Similarity=0.553 Sum_probs=37.5
Q ss_pred eEEecccCCeEEEeeCCceEEeecC--CC----eEEEEEe----ccCCcEEEe
Q 038767 252 WFEIECLDDRALFMGASCLWWVPVE--KG----CAFANIM----HWFGPYSYI 294 (336)
Q Consensus 252 W~~v~~Lg~~alFlg~~~s~~~~a~--~G----~IYf~~~----~~~~~~vy~ 294 (336)
|+++++|||+|||||.++++++++. +| ||||++. ..++.+|||
T Consensus 1 W~~v~~lGd~alFlg~~~~~~~~a~~~~g~~~n~IYf~~~~~~~~~~~~~Vy~ 53 (54)
T PF03478_consen 1 WVEVKSLGDRALFLGRNCSFSVSASDFPGLKGNCIYFLDDSSDESDRDIGVYN 53 (54)
T ss_pred CcCccccCCEEEEEeCCccEEEECCCCCCccCCEEEEecCCCCCCCCCEEEEe
Confidence 9999999999999999999999885 44 9999996 346678998
No 4
>PHA02713 hypothetical protein; Provisional
Probab=98.77 E-value=1.2e-06 Score=85.80 Aligned_cols=147 Identities=12% Similarity=0.091 Sum_probs=100.1
Q ss_pred EEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC-----------------------CcEEEEEecCCceee
Q 038767 151 SCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL-----------------------DAIVAFNVASQNWEI 207 (336)
Q Consensus 151 ~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~-----------------------g~i~~~Dl~~~~~~~ 207 (336)
..+..|.+.++.|+.+...+.-.....++.++|++|+++... ..+.+||+.+++|+.
T Consensus 367 ~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~ 446 (557)
T PHA02713 367 RTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET 446 (557)
T ss_pred ceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence 457889999999998775542223445678899999997421 248899999999998
Q ss_pred ecCCCCcccceeeEEEeCCcEEEEEEEecCc--ceEEEEeecCC-CceEEecccCCeEEEeeCCceEEeecCCCeEEEEE
Q 038767 208 LPYPPSILFMYKYLTEYDGSLLILAKVVNSS--GYRVFTLNRSQ-MDWFEIECLDDRALFMGASCLWWVPVEKGCAFANI 284 (336)
Q Consensus 208 i~~p~p~~~~~~~Lve~~G~LllV~~~~~~~--~~~V~~ld~~~-~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~ 284 (336)
+.. ++..-....++..+|+|+++....... .-.|.+.|.++ .+|+.+.+|.-.-. ...+.+..|+||...
T Consensus 447 v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~------~~~~~~~~~~iyv~G 519 (557)
T PHA02713 447 LPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS------ALHTILHDNTIMMLH 519 (557)
T ss_pred cCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc------cceeEEECCEEEEEe
Confidence 753 332222345788899999998642221 12467779998 79999998874221 122222345999987
Q ss_pred eccC--CcEEEecCcccccccCccccCCCcccccc
Q 038767 285 MHWF--GPYSYIRDQWSEFIRKPVESDSSKVAPRI 317 (336)
Q Consensus 285 ~~~~--~~~vy~~~~~~~~~~~~~~~~~g~~~~~~ 317 (336)
++.. ..-.|| .++++|+.+.
T Consensus 520 g~~~~~~~e~yd-------------~~~~~W~~~~ 541 (557)
T PHA02713 520 CYESYMLQDTFN-------------VYTYEWNHIC 541 (557)
T ss_pred eecceeehhhcC-------------cccccccchh
Confidence 5433 234888 8889998877
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.73 E-value=5e-09 Score=66.95 Aligned_cols=36 Identities=36% Similarity=0.514 Sum_probs=32.6
Q ss_pred CCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767 17 RSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI 52 (336)
Q Consensus 17 Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~ 52 (336)
|..||+|++..|+..|+..|+++++.|||.|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence 789999999999999999999999999999999984
No 6
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.72 E-value=2.6e-07 Score=72.74 Aligned_cols=105 Identities=19% Similarity=0.310 Sum_probs=72.2
Q ss_pred EEeCCeEEEEeeC----CCcEEEEEecCCceeeecCCC-C-cccceeeEEEeCCcEEEEEEEecC--cceEEEEeec-CC
Q 038767 179 VRADGFLYCSFFS----LDAIVAFNVASQNWEILPYPP-S-ILFMYKYLTEYDGSLLILAKVVNS--SGYRVFTLNR-SQ 249 (336)
Q Consensus 179 v~~~G~~Y~l~~~----~g~i~~~Dl~~~~~~~i~~p~-p-~~~~~~~Lve~~G~LllV~~~~~~--~~~~V~~ld~-~~ 249 (336)
++.||.+|+++.. ...|++||+.+|+|+.+..|. + .......|++.+|+|.++...... ..++||.|+. ++
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 6889999999764 258999999999999998761 1 224567899999999999885332 3699999965 56
Q ss_pred CceEEecc-cCCeEEEeeCCceEEeec--CCCeEEEE
Q 038767 250 MDWFEIEC-LDDRALFMGASCLWWVPV--EKGCAFAN 283 (336)
Q Consensus 250 ~~W~~v~~-Lg~~alFlg~~~s~~~~a--~~G~IYf~ 283 (336)
.+|++... ++....=++.++.+.+.. ..|.|.|.
T Consensus 82 ~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 82 QEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred ceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence 78998854 443222122223333322 24666665
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.48 E-value=2.5e-08 Score=63.98 Aligned_cols=37 Identities=41% Similarity=0.474 Sum_probs=31.9
Q ss_pred CCCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767 16 SRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI 52 (336)
Q Consensus 16 ~Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~ 52 (336)
.|++||+|++.+|+.+|+..|+++++.|||+|++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence 3778999999999999999999999999999999985
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.35 E-value=1.6e-07 Score=57.93 Aligned_cols=33 Identities=39% Similarity=0.567 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767 20 LPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI 52 (336)
Q Consensus 20 LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~ 52 (336)
||+|++..|+.+|+..|+.+++.|||+|+.++.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999986
No 9
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.31 E-value=0.00012 Score=71.87 Aligned_cols=203 Identities=12% Similarity=0.058 Sum_probs=121.3
Q ss_pred eEEEEeCCCCcEEEEeccCCCccccCCCeeEEecCCeEEEe----------------c--cCceeeCCCCCccceeE--E
Q 038767 68 SCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFE----------------G--EKNIINLPVWREFSIAK--A 127 (336)
Q Consensus 68 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~s~~GwL~~~----------------~--T~~~~~LP~~~~~~~~~--~ 127 (336)
....|||..+.|..+.-+..|.. ...++.-+|-|+++ | +++|..+|++...+... +
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~----~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRC----RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA 377 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccc----cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE
Confidence 45789999988876543221211 11122223333332 2 67888888887532211 1
Q ss_pred EeecCCCCCCeEEEEEEccCCceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC------CcEEEEEec
Q 038767 128 TFSATPVSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL------DAIVAFNVA 201 (336)
Q Consensus 128 ~~s~~p~~~~~~v~~~~~~~~~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~------g~i~~~Dl~ 201 (336)
++. ..-+++-+.+. ...+..+..|.+..+.|+.+..+........++.++|++|+++... ..+..||+.
T Consensus 378 ~l~----g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 378 VLD----GKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred EEC----CEEEEEecccc-ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 110 01122333331 2344567899999999998876543334566788999999997521 368999999
Q ss_pred CCceeeecCCCCcccceeeEEEeCCcEEEEEEEecC-cceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeE
Q 038767 202 SQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNS-SGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCA 280 (336)
Q Consensus 202 ~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~I 280 (336)
++.|+.++. ++..-...-++..+|.|+.|...... ..-.|.+.|.++.+|..+..|.. ++... .+.+..|.|
T Consensus 453 t~~W~~~~~-M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~-----~rs~~-g~~~~~~~l 525 (571)
T KOG4441|consen 453 TNTWTLIAP-MNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS-----PRSAV-GVVVLGGKL 525 (571)
T ss_pred CCceeecCC-cccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc-----ccccc-cEEEECCEE
Confidence 999999853 22211223367789999999986432 22347777999999999976662 22211 111222378
Q ss_pred EEEEec
Q 038767 281 FANIMH 286 (336)
Q Consensus 281 Yf~~~~ 286 (336)
|...++
T Consensus 526 y~vGG~ 531 (571)
T KOG4441|consen 526 YAVGGF 531 (571)
T ss_pred EEEecc
Confidence 887643
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=98.27 E-value=0.0001 Score=71.24 Aligned_cols=175 Identities=14% Similarity=0.077 Sum_probs=101.0
Q ss_pred eEEEEeCCCCcEEEEeccCCCccccCCCeeEEecCCeEEEec--------------cCceeeCCCCCccceeEEEeecCC
Q 038767 68 SCYLYDPCHKQRFTVFISDKNRTTLLGARPLDSKNGWVLFEG--------------EKNIINLPVWREFSIAKATFSATP 133 (336)
Q Consensus 68 ~~~~~~p~~~~~~~~~~~~~P~~~~~~~~~~~s~~GwL~~~~--------------T~~~~~LP~~~~~~~~~~~~s~~p 133 (336)
....|||.+++|..++-+..|... ....+.+|.|++.. ++++..+|+++..+...++-.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~----~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--- 360 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLY----ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--- 360 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhc----ceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE---
Confidence 346799999999876543223111 11223466665543 455666666654221100000
Q ss_pred CCCCeEEEEEEccCCceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCCCcEEEEEecCCceeeecCCCC
Q 038767 134 VSPDCVIFVIWVGVMEISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPS 213 (336)
Q Consensus 134 ~~~~~~v~~~~~~~~~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p~p 213 (336)
..+ .+.++-...+....+..|.|.++.|+.+..++.-.....++.++|++|+++ |...+||+.+++|+.+.. +|
T Consensus 361 -~~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~-m~ 434 (480)
T PHA02790 361 -INN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDD-PI 434 (480)
T ss_pred -ECC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCC-CC
Confidence 011 122221111112345678999999998765432122445678999999987 457889999999998853 23
Q ss_pred cccceeeEEEeCCcEEEEEEEecCc-ceEEEEeecCCCceEEe
Q 038767 214 ILFMYKYLTEYDGSLLILAKVVNSS-GYRVFTLNRSQMDWFEI 255 (336)
Q Consensus 214 ~~~~~~~Lve~~G~LllV~~~~~~~-~~~V~~ld~~~~~W~~v 255 (336)
..-...-++..+|+|+++....... .-.|...|.++.+|.-.
T Consensus 435 ~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 435 YPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 2112335677899999998743221 12355558889999754
No 11
>PHA02713 hypothetical protein; Provisional
Probab=98.26 E-value=5.2e-05 Score=74.48 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=74.6
Q ss_pred EEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC------CcEEEEEecC-CceeeecCCCCcccceeeEEE
Q 038767 151 SCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL------DAIVAFNVAS-QNWEILPYPPSILFMYKYLTE 223 (336)
Q Consensus 151 ~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~------g~i~~~Dl~~-~~~~~i~~p~p~~~~~~~Lve 223 (336)
..+..|.|..+.|+.+...+.......++.++|++|+++... ..+.+||+.+ +.|+.+. ++|.......++.
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~ 510 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTIL 510 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-ccCcccccceeEE
Confidence 356789999999998876532233556889999999997421 1467999998 7999875 3343223456778
Q ss_pred eCCcEEEEEEEecCcceEEEEeecCCCceEEeccc
Q 038767 224 YDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECL 258 (336)
Q Consensus 224 ~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~L 258 (336)
.+|+|+++....+...++ ..|..+.+|..+..-
T Consensus 511 ~~~~iyv~Gg~~~~~~~e--~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQD--TFNVYTYEWNHICHQ 543 (557)
T ss_pred ECCEEEEEeeecceeehh--hcCcccccccchhhh
Confidence 899999998853323344 448889999988543
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.21 E-value=6.2e-05 Score=73.90 Aligned_cols=107 Identities=12% Similarity=0.194 Sum_probs=79.9
Q ss_pred ceEEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCCC-----cEEEEEecCCceeeecCCCCcccceeeEEE
Q 038767 149 EISCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSLD-----AIVAFNVASQNWEILPYPPSILFMYKYLTE 223 (336)
Q Consensus 149 ~~~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~g-----~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve 223 (336)
....+..|.|..+.|+.+..+..-+....++..||++|+++...+ .+-+||+.+++|..+. +++..-....++.
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-~m~~~rs~~g~~~ 520 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-PMTSPRSAVGVVV 520 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-cCccccccccEEE
Confidence 345678899999999998876533445668899999999976422 4889999999999984 2322223456788
Q ss_pred eCCcEEEEEEEecC---cceEEEEeecCCCceEEeccc
Q 038767 224 YDGSLLILAKVVNS---SGYRVFTLNRSQMDWFEIECL 258 (336)
Q Consensus 224 ~~G~LllV~~~~~~---~~~~V~~ld~~~~~W~~v~~L 258 (336)
.+|+|++|...... ..+++| |.++.+|.+...+
T Consensus 521 ~~~~ly~vGG~~~~~~l~~ve~y--dp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 521 LGGKLYAVGGFDGNNNLNTVECY--DPETDTWTEVTEP 556 (571)
T ss_pred ECCEEEEEecccCccccceeEEc--CCCCCceeeCCCc
Confidence 89999999985332 456666 9999999998763
No 13
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.10 E-value=2.8e-05 Score=63.82 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=58.1
Q ss_pred EEeCCeEEEEeeCC-C----cEEEEEecCCce-eeecCCCCcc--cceeeE-EEeCCcEEEEEEEecCcceEEEEeec--
Q 038767 179 VRADGFLYCSFFSL-D----AIVAFNVASQNW-EILPYPPSIL--FMYKYL-TEYDGSLLILAKVVNSSGYRVFTLNR-- 247 (336)
Q Consensus 179 v~~~G~~Y~l~~~~-g----~i~~~Dl~~~~~-~~i~~p~p~~--~~~~~L-ve~~G~LllV~~~~~~~~~~V~~ld~-- 247 (336)
|+.||.+||++... + .|++||+++|+| +.++.|.... .....| +..+|+|.++........++||.|++
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~~ 81 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKYG 81 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeeec
Confidence 78999999998642 1 599999999999 6775542211 123445 33467888886544445799999985
Q ss_pred -CCCceEEecccC
Q 038767 248 -SQMDWFEIECLD 259 (336)
Q Consensus 248 -~~~~W~~v~~Lg 259 (336)
...+|+|+.+++
T Consensus 82 ~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 82 YGKESWTKLFTID 94 (164)
T ss_pred cCcceEEEEEEEe
Confidence 367899998776
No 14
>PHA03098 kelch-like protein; Provisional
Probab=97.97 E-value=0.00046 Score=67.71 Aligned_cols=109 Identities=9% Similarity=0.106 Sum_probs=73.7
Q ss_pred EEEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC--------CcEEEEEecCCceeeecCCCCcccceeeEE
Q 038767 151 SCISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL--------DAIVAFNVASQNWEILPYPPSILFMYKYLT 222 (336)
Q Consensus 151 ~~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~--------g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lv 222 (336)
..+..|.+.+++|+.+...+.-.....++.++|++|+++... ..+.+||+.+++|+.+... |.......++
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~~r~~~~~~ 484 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL-NFPRINASLC 484 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCC-CcccccceEE
Confidence 356788899999998765432223445778899999997421 2389999999999988532 2211123355
Q ss_pred EeCCcEEEEEEEecCc-ceEEEEeecCCCceEEecccCC
Q 038767 223 EYDGSLLILAKVVNSS-GYRVFTLNRSQMDWFEIECLDD 260 (336)
Q Consensus 223 e~~G~LllV~~~~~~~-~~~V~~ld~~~~~W~~v~~Lg~ 260 (336)
..+|+|+++....... .=.|+..|.++.+|..+..++.
T Consensus 485 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 485 IFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred EECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 5689999887643221 2356777999999998877553
No 15
>PLN02153 epithiospecifier protein
Probab=97.80 E-value=0.0056 Score=56.45 Aligned_cols=109 Identities=18% Similarity=0.188 Sum_probs=71.5
Q ss_pred EEEEEEecCCCCeeeeeee-----CCccccccEEEeCCeEEEEeeCC-----------CcEEEEEecCCceeeecCCC--
Q 038767 151 SCISICRPGDTTWTELRFQ-----DNYRYVKNMVRADGFLYCSFFSL-----------DAIVAFNVASQNWEILPYPP-- 212 (336)
Q Consensus 151 ~~v~~~~~g~~~W~~~~~~-----~~~~~~~d~v~~~G~~Y~l~~~~-----------g~i~~~Dl~~~~~~~i~~p~-- 212 (336)
..+..|.+..+.|+.+... +.-.....++..++++|++.... ..+.+||+.+++|+.++.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~ 180 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN 180 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC
Confidence 3457788999999987643 11112445677899999986421 25789999999999875421
Q ss_pred CcccceeeEEEeCCcEEEEEEEe-----cC----cceEEEEeecCCCceEEecccC
Q 038767 213 SILFMYKYLTEYDGSLLILAKVV-----NS----SGYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 213 p~~~~~~~Lve~~G~LllV~~~~-----~~----~~~~V~~ld~~~~~W~~v~~Lg 259 (336)
|..-....++..+|+|+++.... .+ ..-.|+.+|.++.+|+++..+|
T Consensus 181 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g 236 (341)
T PLN02153 181 FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTG 236 (341)
T ss_pred CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence 11111223556789999886531 11 1235778899999999998665
No 16
>PHA03098 kelch-like protein; Provisional
Probab=97.78 E-value=0.002 Score=63.27 Aligned_cols=146 Identities=13% Similarity=0.105 Sum_probs=93.6
Q ss_pred EEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC------CcEEEEEecCCceeeecCCCCcccceeeEEEeC
Q 038767 152 CISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL------DAIVAFNVASQNWEILPYPPSILFMYKYLTEYD 225 (336)
Q Consensus 152 ~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~------g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~ 225 (336)
.+..|.+.++.|+.....+.-.....++.++|++|+++... ..+..||+.+++|+.+.. .|........+..+
T Consensus 359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~ 437 (534)
T PHA03098 359 TVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHD 437 (534)
T ss_pred eEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC-CCccccCceEEEEC
Confidence 45778899999998765432222344577899999997521 358999999999998753 23221223356678
Q ss_pred CcEEEEEEEecCc----ceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeEEEEEecc-----CCcEEEecC
Q 038767 226 GSLLILAKVVNSS----GYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHW-----FGPYSYIRD 296 (336)
Q Consensus 226 G~LllV~~~~~~~----~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~~~~-----~~~~vy~~~ 296 (336)
|+|+++....... .-.++..|.++.+|.++..++.. ..+.+.+ +..|.||...+.. .+..+||
T Consensus 438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~----r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd-- 509 (534)
T PHA03098 438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP----RINASLC--IFNNKIYVVGGDKYEYYINEIEVYD-- 509 (534)
T ss_pred CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc----cccceEE--EECCEEEEEcCCcCCcccceeEEEe--
Confidence 9999887642211 12378889999999999877521 1111111 1234888876332 2345888
Q ss_pred cccccccCccccCCCcccccc
Q 038767 297 QWSEFIRKPVESDSSKVAPRI 317 (336)
Q Consensus 297 ~~~~~~~~~~~~~~g~~~~~~ 317 (336)
.++++|+...
T Consensus 510 -----------~~~~~W~~~~ 519 (534)
T PHA03098 510 -----------DKTNTWTLFC 519 (534)
T ss_pred -----------CCCCEEEecC
Confidence 8888887665
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.76 E-value=0.0013 Score=60.14 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=68.5
Q ss_pred EEEEEecCCCCe----eeeeeeCCccccccEEEeCCeEEEEeeC-----CCcEEEEEecCCceeeecC-CC-Ccccceee
Q 038767 152 CISICRPGDTTW----TELRFQDNYRYVKNMVRADGFLYCSFFS-----LDAIVAFNVASQNWEILPY-PP-SILFMYKY 220 (336)
Q Consensus 152 ~v~~~~~g~~~W----~~~~~~~~~~~~~d~v~~~G~~Y~l~~~-----~g~i~~~Dl~~~~~~~i~~-p~-p~~~~~~~ 220 (336)
.+..+...++.| +.+...+.-.....++.++|++|++... ...+.+||+.+++|+.+.. |. +. ....
T Consensus 89 ~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r--~~~~ 166 (323)
T TIGR03548 89 SVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR--VQPV 166 (323)
T ss_pred eEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC--Ccce
Confidence 445566667777 3333222111234567789999999642 1368999999999998853 21 21 2234
Q ss_pred EEEeCCcEEEEEEEecCcceEEEEeecCCCceEEecccC
Q 038767 221 LTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 221 Lve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg 259 (336)
++..+|+|+++..........+++.|.++.+|.++..+.
T Consensus 167 ~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~ 205 (323)
T TIGR03548 167 CVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPT 205 (323)
T ss_pred EEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCC
Confidence 466789999887642222345678899999999998763
No 18
>PLN02153 epithiospecifier protein
Probab=97.65 E-value=0.016 Score=53.48 Aligned_cols=106 Identities=15% Similarity=0.203 Sum_probs=71.2
Q ss_pred EEEEEecCCCCeeeeeeeCC---ccccccEEEeCCeEEEEeeC-------------CCcEEEEEecCCceeeecC----C
Q 038767 152 CISICRPGDTTWTELRFQDN---YRYVKNMVRADGFLYCSFFS-------------LDAIVAFNVASQNWEILPY----P 211 (336)
Q Consensus 152 ~v~~~~~g~~~W~~~~~~~~---~~~~~d~v~~~G~~Y~l~~~-------------~g~i~~~Dl~~~~~~~i~~----p 211 (336)
.+..|.+.++.|+.++.... .+....++.++|++|++... ...+.+||+.+.+|+.+.. |
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P 239 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP 239 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC
Confidence 45778999999998764321 11233467789999987421 1468999999999998753 2
Q ss_pred CCcccceeeEEEeCCcEEEEEEEec--------Cc--ceEEEEeecCCCceEEecccC
Q 038767 212 PSILFMYKYLTEYDGSLLILAKVVN--------SS--GYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 212 ~p~~~~~~~Lve~~G~LllV~~~~~--------~~--~~~V~~ld~~~~~W~~v~~Lg 259 (336)
.|.. ..-.+..+|+|+++..... .. .-.||.+|.++.+|.++...+
T Consensus 240 ~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~ 295 (341)
T PLN02153 240 SARS--VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECG 295 (341)
T ss_pred CCcc--eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCC
Confidence 2322 1224556788888877421 01 127899999999999987543
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.60 E-value=0.002 Score=60.22 Aligned_cols=108 Identities=9% Similarity=0.168 Sum_probs=71.7
Q ss_pred EEEEEecCCCCeeeeeeeCCcccc-ccEEE-eCCeEEEEeeCC-------------------------------------
Q 038767 152 CISICRPGDTTWTELRFQDNYRYV-KNMVR-ADGFLYCSFFSL------------------------------------- 192 (336)
Q Consensus 152 ~v~~~~~g~~~W~~~~~~~~~~~~-~d~v~-~~G~~Y~l~~~~------------------------------------- 192 (336)
.+..|.+..++|+.+......... ...+. .+|++|++....
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 186 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF 186 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence 356788889999998642111111 22333 799999996421
Q ss_pred --CcEEEEEecCCceeeecCCCCc-ccceeeEEEeCCcEEEEEEEecC----cceEEEEeecCCCceEEecccCC
Q 038767 193 --DAIVAFNVASQNWEILPYPPSI-LFMYKYLTEYDGSLLILAKVVNS----SGYRVFTLNRSQMDWFEIECLDD 260 (336)
Q Consensus 193 --g~i~~~Dl~~~~~~~i~~p~p~-~~~~~~Lve~~G~LllV~~~~~~----~~~~V~~ld~~~~~W~~v~~Lg~ 260 (336)
..+..||+.+++|+.+.. .|. .....-++..+++|+++...... ..+.++++|.++.+|.++..|..
T Consensus 187 ~~~~v~~YD~~t~~W~~~~~-~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~ 260 (376)
T PRK14131 187 FNKEVLSYDPSTNQWKNAGE-SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP 260 (376)
T ss_pred cCceEEEEECCCCeeeECCc-CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC
Confidence 258999999999998753 232 12233466778999999874321 23455667778899999998863
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=97.60 E-value=0.0019 Score=62.45 Aligned_cols=106 Identities=9% Similarity=0.012 Sum_probs=74.1
Q ss_pred EEEEEecCCCCeeeeeeeCCccccccEEEeCCeEEEEeeCC--CcEEEEEecCCceeeecCCCCcccceeeEEEeCCcEE
Q 038767 152 CISICRPGDTTWTELRFQDNYRYVKNMVRADGFLYCSFFSL--DAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLL 229 (336)
Q Consensus 152 ~v~~~~~g~~~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~--g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~Ll 229 (336)
.+..|.+..+.|..++..+.-......+..+|++|+++... ..+..+|+.+++|+.++. +|..-...-.+..+|+|+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~-l~~~r~~~~~~~~~g~IY 366 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS-LLKPRCNPAVASINNVIY 366 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCC-CCCCCcccEEEEECCEEE
Confidence 45678899999998876542222445677899999997531 358899998889998753 332222345678899999
Q ss_pred EEEEEecCcceEEEEeecCCCceEEecccC
Q 038767 230 ILAKVVNSSGYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 230 lV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg 259 (336)
++.... +..-.+...|.++.+|..+..|.
T Consensus 367 viGG~~-~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 367 VIGGHS-ETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred EecCcC-CCCccEEEEeCCCCEEEeCCCCC
Confidence 998742 22223445588899999998876
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.58 E-value=0.003 Score=58.32 Aligned_cols=108 Identities=10% Similarity=0.226 Sum_probs=71.4
Q ss_pred EEEEEecCCCCeeeeeeeCCcccc-ccEE-EeCCeEEEEeeCC-------------------------------------
Q 038767 152 CISICRPGDTTWTELRFQDNYRYV-KNMV-RADGFLYCSFFSL------------------------------------- 192 (336)
Q Consensus 152 ~v~~~~~g~~~W~~~~~~~~~~~~-~d~v-~~~G~~Y~l~~~~------------------------------------- 192 (336)
.+..|.+..++|+.+......... ...+ .++|++|++....
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF 165 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence 457788999999988632111112 2223 6899999996421
Q ss_pred --CcEEEEEecCCceeeecCCCCc-ccceeeEEEeCCcEEEEEEEecC----cceEEEEeecCCCceEEecccCC
Q 038767 193 --DAIVAFNVASQNWEILPYPPSI-LFMYKYLTEYDGSLLILAKVVNS----SGYRVFTLNRSQMDWFEIECLDD 260 (336)
Q Consensus 193 --g~i~~~Dl~~~~~~~i~~p~p~-~~~~~~Lve~~G~LllV~~~~~~----~~~~V~~ld~~~~~W~~v~~Lg~ 260 (336)
..+.+||+.+++|+.+.. +|. .....-++..+|+|+++...... ..+.+|.+|.++.+|.++..|+.
T Consensus 166 ~~~~v~~YDp~t~~W~~~~~-~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 166 WNKNVLSYDPSTNQWRNLGE-NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred ccceEEEEECCCCceeECcc-CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 358899999999998853 232 11223456678999999875321 23445666677789999998863
No 22
>PLN02193 nitrile-specifier protein
Probab=97.47 E-value=0.0044 Score=59.79 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=73.7
Q ss_pred EEEEEecCCCCeeeeeeeCC---ccccccEEEeCCeEEEEeeCC-----CcEEEEEecCCceeeecCCC--CcccceeeE
Q 038767 152 CISICRPGDTTWTELRFQDN---YRYVKNMVRADGFLYCSFFSL-----DAIVAFNVASQNWEILPYPP--SILFMYKYL 221 (336)
Q Consensus 152 ~v~~~~~g~~~W~~~~~~~~---~~~~~d~v~~~G~~Y~l~~~~-----g~i~~~Dl~~~~~~~i~~p~--p~~~~~~~L 221 (336)
.+..+.+..+.|+.+..... -.....++..++++|++.... ..+.+||+.+++|+.+..+. |..-...-+
T Consensus 245 dv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~ 324 (470)
T PLN02193 245 GFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGL 324 (470)
T ss_pred cEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEE
Confidence 45778888999998765421 122445677899999996431 35889999999999876431 111112335
Q ss_pred EEeCCcEEEEEEEecCcceEEEEeecCCCceEEecccCC
Q 038767 222 TEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDD 260 (336)
Q Consensus 222 ve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg~ 260 (336)
+..+|+++++........-.|+.+|.++.+|.++..+|.
T Consensus 325 ~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~ 363 (470)
T PLN02193 325 EVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGV 363 (470)
T ss_pred EEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCC
Confidence 567899998876422222457888999999999987753
No 23
>PLN02193 nitrile-specifier protein
Probab=97.34 E-value=0.022 Score=54.95 Aligned_cols=107 Identities=10% Similarity=0.212 Sum_probs=72.5
Q ss_pred EEEEEecCCCCeeeeeeeCCc---cccccEEEeCCeEEEEeeCC----CcEEEEEecCCceeeecC----CCCcccceee
Q 038767 152 CISICRPGDTTWTELRFQDNY---RYVKNMVRADGFLYCSFFSL----DAIVAFNVASQNWEILPY----PPSILFMYKY 220 (336)
Q Consensus 152 ~v~~~~~g~~~W~~~~~~~~~---~~~~d~v~~~G~~Y~l~~~~----g~i~~~Dl~~~~~~~i~~----p~p~~~~~~~ 220 (336)
.+..+.+.+++|+.+...... +....++.++|++|++.... ..+.+||+.+++|+.+.. |.|.. ...
T Consensus 295 ~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~--~~~ 372 (470)
T PLN02193 295 TLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERS--VFA 372 (470)
T ss_pred eEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcc--eeE
Confidence 456788899999987643211 12334667899999986421 479999999999998753 22322 122
Q ss_pred EEEeCCcEEEEEEEecC--------cce--EEEEeecCCCceEEecccCC
Q 038767 221 LTEYDGSLLILAKVVNS--------SGY--RVFTLNRSQMDWFEIECLDD 260 (336)
Q Consensus 221 Lve~~G~LllV~~~~~~--------~~~--~V~~ld~~~~~W~~v~~Lg~ 260 (336)
.+..+++|+++...... ..+ .+|.+|.++.+|.++..++.
T Consensus 373 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~ 422 (470)
T PLN02193 373 SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGE 422 (470)
T ss_pred EEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCC
Confidence 45567888888774210 112 58999999999999987764
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.01 E-value=0.022 Score=52.11 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=76.0
Q ss_pred CeeeeeeeCCccccccEEEeCCeEEEEeeCC-----CcEEEEEecCCce----eeecCCCCcccceeeEEEeCCcEEEEE
Q 038767 162 TWTELRFQDNYRYVKNMVRADGFLYCSFFSL-----DAIVAFNVASQNW----EILPYPPSILFMYKYLTEYDGSLLILA 232 (336)
Q Consensus 162 ~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~-----g~i~~~Dl~~~~~----~~i~~p~p~~~~~~~Lve~~G~LllV~ 232 (336)
+|+.+...+.-......+..++++|++.... ..+..||+.++.| +.+. +.|........+..+|.|+++.
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~-~lp~~~~~~~~~~~~~~iYv~G 130 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIG-NLPFTFENGSACYKDGTLYVGG 130 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC-CCCcCccCceEEEECCEEEEEe
Confidence 6877664432122334566799999997421 3688999988887 3332 2232212234566789999987
Q ss_pred EEecC-cceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeEEEEEecc----CCcEEEe
Q 038767 233 KVVNS-SGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMHW----FGPYSYI 294 (336)
Q Consensus 233 ~~~~~-~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~~~~----~~~~vy~ 294 (336)
....+ ..-.||++|.++.+|.++..++... +... ++.+..|.||...... .+..+||
T Consensus 131 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~----r~~~-~~~~~~~~iYv~GG~~~~~~~~~~~yd 192 (323)
T TIGR03548 131 GNRNGKPSNKSYLFNLETQEWFELPDFPGEP----RVQP-VCVKLQNELYVFGGGSNIAYTDGYKYS 192 (323)
T ss_pred CcCCCccCceEEEEcCCCCCeeECCCCCCCC----CCcc-eEEEECCEEEEEcCCCCccccceEEEe
Confidence 74222 2336888899999999998876421 2211 1112234888876332 2345788
No 25
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00047 Score=60.63 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=35.6
Q ss_pred CCCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767 16 SRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI 52 (336)
Q Consensus 16 ~Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~ 52 (336)
.|..||+|++..|+..|+.+++++...|||+|..+.+
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~ 133 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLAS 133 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccc
Confidence 3999999999999999999999999999999999986
No 26
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.08 E-value=0.057 Score=49.79 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=66.9
Q ss_pred CCCCeeeeeeeCC-ccccccEEEeCCeEEEEeeCC-----------CcEEEEEecCCceeeecCCCCcccc-eeeEEEeC
Q 038767 159 GDTTWTELRFQDN-YRYVKNMVRADGFLYCSFFSL-----------DAIVAFNVASQNWEILPYPPSILFM-YKYLTEYD 225 (336)
Q Consensus 159 g~~~W~~~~~~~~-~~~~~d~v~~~G~~Y~l~~~~-----------g~i~~~Dl~~~~~~~i~~p~p~~~~-~~~Lve~~ 225 (336)
..+.|+.+...+. .+....++..+|++|++.... ..+..||+.+++|+.+..+.|.... ....+..+
T Consensus 39 ~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~ 118 (346)
T TIGR03547 39 PSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHN 118 (346)
T ss_pred CCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeC
Confidence 5678998775531 122345678899999997431 2588999999999988643343211 11232578
Q ss_pred CcEEEEEEEecCc-----------------------------------ceEEEEeecCCCceEEecccC
Q 038767 226 GSLLILAKVVNSS-----------------------------------GYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 226 G~LllV~~~~~~~-----------------------------------~~~V~~ld~~~~~W~~v~~Lg 259 (336)
|+|+++....... .=.|+..|.++.+|.++..|+
T Consensus 119 g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p 187 (346)
T TIGR03547 119 GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENP 187 (346)
T ss_pred CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCC
Confidence 9999987632100 125777799999999998776
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.42 E-value=0.22 Score=45.98 Aligned_cols=82 Identities=12% Similarity=0.265 Sum_probs=51.3
Q ss_pred cEEEeCCeEEEEeeC--CCcEEEEEecCCceeeecCC---CCcccceeeEEEeCCcEEEEEEEecC---cce----EEEE
Q 038767 177 NMVRADGFLYCSFFS--LDAIVAFNVASQNWEILPYP---PSILFMYKYLTEYDGSLLILAKVVNS---SGY----RVFT 244 (336)
Q Consensus 177 d~v~~~G~~Y~l~~~--~g~i~~~Dl~~~~~~~i~~p---~p~~~~~~~Lve~~G~LllV~~~~~~---~~~----~V~~ 244 (336)
..+.++|.||--..+ .+.++.+++...+|+.+..| +|.+... -.|.-.|.|+|......+ ..| ..|.
T Consensus 80 ELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq-~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~ 158 (521)
T KOG1230|consen 80 ELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQ-AVAVPSNILWLFGGEFASPNQEQFHHYKDLWL 158 (521)
T ss_pred eeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccce-eEEeccCeEEEeccccCCcchhhhhhhhheee
Confidence 345667777652211 15899999999999977653 3443222 222234677776654222 222 5789
Q ss_pred eecCCCceEEecccC
Q 038767 245 LNRSQMDWFEIECLD 259 (336)
Q Consensus 245 ld~~~~~W~~v~~Lg 259 (336)
+|..+.+|+++..=|
T Consensus 159 fd~~trkweql~~~g 173 (521)
T KOG1230|consen 159 FDLKTRKWEQLEFGG 173 (521)
T ss_pred eeeccchheeeccCC
Confidence 999999999997655
No 28
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.25 E-value=0.15 Score=47.77 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCCeeeeeeeCC-ccccccEEEeCCeEEEEeeCC-----------CcEEEEEecCCceeeecCCCCcccceeeEEE-eCC
Q 038767 160 DTTWTELRFQDN-YRYVKNMVRADGFLYCSFFSL-----------DAIVAFNVASQNWEILPYPPSILFMYKYLTE-YDG 226 (336)
Q Consensus 160 ~~~W~~~~~~~~-~~~~~d~v~~~G~~Y~l~~~~-----------g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve-~~G 226 (336)
.+.|+.+...+. ......++..+|++|++.... ..+.+||+.+++|+.+..+.|........+. .+|
T Consensus 61 ~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~ 140 (376)
T PRK14131 61 SKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNG 140 (376)
T ss_pred CCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCC
Confidence 468987764431 122334677899999996421 2588999999999988642233211222333 689
Q ss_pred cEEEEEEEecC-----------------------------------cceEEEEeecCCCceEEecccC
Q 038767 227 SLLILAKVVNS-----------------------------------SGYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 227 ~LllV~~~~~~-----------------------------------~~~~V~~ld~~~~~W~~v~~Lg 259 (336)
+|+++...... ..-.|+..|.++.+|.++..++
T Consensus 141 ~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p 208 (376)
T PRK14131 141 KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESP 208 (376)
T ss_pred EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCC
Confidence 99888763110 0135888899999999987766
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=94.05 E-value=3.7 Score=38.22 Aligned_cols=130 Identities=12% Similarity=0.218 Sum_probs=79.9
Q ss_pred EEEEecCCCCeeeeeeeCC-c-cccccEEE-eCCeEEEEeeC---C--------CcEEEEEecCCceeeecCC---CCcc
Q 038767 153 ISICRPGDTTWTELRFQDN-Y-RYVKNMVR-ADGFLYCSFFS---L--------DAIVAFNVASQNWEILPYP---PSIL 215 (336)
Q Consensus 153 v~~~~~g~~~W~~~~~~~~-~-~~~~d~v~-~~G~~Y~l~~~---~--------g~i~~~Dl~~~~~~~i~~p---~p~~ 215 (336)
+.+|....++|+.+..++. . +....+|. -.|.+|..... | -.+..||+.+.+|..+..+ .|.
T Consensus 100 Ly~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~R- 178 (521)
T KOG1230|consen 100 LYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR- 178 (521)
T ss_pred eeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCC-
Confidence 3778888899999876531 1 12334444 44777776531 1 2689999999999988653 232
Q ss_pred cceeeEEEeCCcEEEEEEEecC-cc----eEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCCeEEEEEec
Q 038767 216 FMYKYLTEYDGSLLILAKVVNS-SG----YRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKGCAFANIMH 286 (336)
Q Consensus 216 ~~~~~Lve~~G~LllV~~~~~~-~~----~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G~IYf~~~~ 286 (336)
....+|.+.-+|++....... .. =.||.+|.++-+|.+++- ++..==.-.+|.+++. .+|.||....|
T Consensus 179 -SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~PtpRSGcq~~vt-pqg~i~vyGGY 251 (521)
T KOG1230|consen 179 -SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAGPTPRSGCQFSVT-PQGGIVVYGGY 251 (521)
T ss_pred -ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCCCCCCCcceEEec-CCCcEEEEcch
Confidence 234577788888887765332 11 157888889999999987 4431001124444432 24577776644
No 30
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=92.65 E-value=0.18 Score=30.41 Aligned_cols=28 Identities=18% Similarity=0.174 Sum_probs=20.2
Q ss_pred ccccEEEeCCeEEEEeeCCCcEEEEEecC
Q 038767 174 YVKNMVRADGFLYCSFFSLDAIVAFNVAS 202 (336)
Q Consensus 174 ~~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~ 202 (336)
....+++.+|.+|+.+.+ |.+++||.++
T Consensus 13 ~~~~~~v~~g~vyv~~~d-g~l~ald~~t 40 (40)
T PF13570_consen 13 IWSSPAVAGGRVYVGTGD-GNLYALDAAT 40 (40)
T ss_dssp --S--EECTSEEEEE-TT-SEEEEEETT-
T ss_pred cCcCCEEECCEEEEEcCC-CEEEEEeCCC
Confidence 456678999999999998 9999999863
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=92.59 E-value=1.6 Score=42.34 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=70.8
Q ss_pred EEEEEecCCCCeeeeeeeCCcc---ccccEEEeCCeEEEEeeC------CCcEEEEEecCCceeeecC----CCCcccce
Q 038767 152 CISICRPGDTTWTELRFQDNYR---YVKNMVRADGFLYCSFFS------LDAIVAFNVASQNWEILPY----PPSILFMY 218 (336)
Q Consensus 152 ~v~~~~~g~~~W~~~~~~~~~~---~~~d~v~~~G~~Y~l~~~------~g~i~~~Dl~~~~~~~i~~----p~p~~~~~ 218 (336)
-+..+...+..|+.+....+.+ ....++.++.++|+.... ...++++|+.+.+|..+.. |.|.+ .
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~--g 217 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY--G 217 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC--C
Confidence 4577888899999887543322 244566777888887632 1479999999999998765 22332 2
Q ss_pred eeEEEeCCcEEEEEEEecCc--ceEEEEeecCCCceEEecccC
Q 038767 219 KYLTEYDGSLLILAKVVNSS--GYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 219 ~~Lve~~G~LllV~~~~~~~--~~~V~~ld~~~~~W~~v~~Lg 259 (336)
.-++..+++++++...+.+. -=.||.||..+.+|.++...|
T Consensus 218 H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 218 HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred ceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccC
Confidence 23555677787777654222 236888999889998775444
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=91.99 E-value=5.2 Score=38.77 Aligned_cols=105 Identities=12% Similarity=0.203 Sum_probs=67.5
Q ss_pred EEEEecCCCCeeeeeeeCCccc---cccEEEeCCeEEEEeeCC------CcEEEEEecCCceeeecC----CCCccccee
Q 038767 153 ISICRPGDTTWTELRFQDNYRY---VKNMVRADGFLYCSFFSL------DAIVAFNVASQNWEILPY----PPSILFMYK 219 (336)
Q Consensus 153 v~~~~~g~~~W~~~~~~~~~~~---~~d~v~~~G~~Y~l~~~~------g~i~~~Dl~~~~~~~i~~----p~p~~~~~~ 219 (336)
+.+++.....|+........+. ...++..+.++|...... ..|..||+.+.+|+.+.. |+|. ..
T Consensus 90 l~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r---~~ 166 (482)
T KOG0379|consen 90 LYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR---AG 166 (482)
T ss_pred eEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc---cc
Confidence 5666666778876554322222 345667788888887541 279999999999987653 2222 22
Q ss_pred eEEEeCCcEEEEEEEecC---cceEEEEeecCCCceEEecccCC
Q 038767 220 YLTEYDGSLLILAKVVNS---SGYRVFTLNRSQMDWFEIECLDD 260 (336)
Q Consensus 220 ~Lve~~G~LllV~~~~~~---~~~~V~~ld~~~~~W~~v~~Lg~ 260 (336)
+-+...|+.++|..-+.. ....+|.+|.++.+|.++...|.
T Consensus 167 Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 167 HSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred ceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCC
Confidence 333334455555543322 35689999999999999988774
No 33
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=91.85 E-value=0.34 Score=30.57 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=30.4
Q ss_pred EEEeCCcEEEEEEE---e-cCcceEEEEeecCCCceEEecccC
Q 038767 221 LTEYDGSLLILAKV---V-NSSGYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 221 Lve~~G~LllV~~~---~-~~~~~~V~~ld~~~~~W~~v~~Lg 259 (336)
.+..+++|+++... . ....-.|+.+|.++.+|.++..+|
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 45678999999885 1 124568899999999999998775
No 34
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.32 E-value=7.6 Score=35.52 Aligned_cols=121 Identities=14% Similarity=0.118 Sum_probs=66.7
Q ss_pred cccEEEe--CCeEEEEeeCCCcEEEEEecCCc------eeeecCCC-Cccc--ceeeEEEe---CCcEEEEEEEecC---
Q 038767 175 VKNMVRA--DGFLYCSFFSLDAIVAFNVASQN------WEILPYPP-SILF--MYKYLTEY---DGSLLILAKVVNS--- 237 (336)
Q Consensus 175 ~~d~v~~--~G~~Y~l~~~~g~i~~~Dl~~~~------~~~i~~p~-p~~~--~~~~Lve~---~G~LllV~~~~~~--- 237 (336)
+.+.++. +|.+|+++.+ |.|+.+|++.+. |+.+.... -.+| ....++.. .|+|++. ++...
T Consensus 186 f~~~~~~~~~~~~~F~Sy~-G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL-Mh~g~~gs 263 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYE-GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL-MHQGGEGS 263 (342)
T ss_dssp -S--EEETTTTEEEEEBTT-SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE-EEE--TT-
T ss_pred ccccceECCCCeEEEEecC-CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE-ecCCCCCC
Confidence 5555554 4689999999 999999999875 43332110 0012 12334433 5677754 33221
Q ss_pred ---cceEEEEeecCCCceEEecccCCeEEEeeCCceEEeecCCC-eEEEEEeccCCcEEEecCcccccccCccccCCCcc
Q 038767 238 ---SGYRVFTLNRSQMDWFEIECLDDRALFMGASCLWWVPVEKG-CAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKV 313 (336)
Q Consensus 238 ---~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G-~IYf~~~~~~~~~vy~~~~~~~~~~~~~~~~~g~~ 313 (336)
..-+||.+|..+++=+..-.|+..+. |..++...- .+|-.+....++.||| ..+|+.
T Consensus 264 HKdpgteVWv~D~~t~krv~Ri~l~~~~~------Si~Vsqd~~P~L~~~~~~~~~l~v~D-------------~~tGk~ 324 (342)
T PF06433_consen 264 HKDPGTEVWVYDLKTHKRVARIPLEHPID------SIAVSQDDKPLLYALSAGDGTLDVYD-------------AATGKL 324 (342)
T ss_dssp TTS-EEEEEEEETTTTEEEEEEEEEEEES------EEEEESSSS-EEEEEETTTTEEEEEE-------------TTT--E
T ss_pred ccCCceEEEEEECCCCeEEEEEeCCCccc------eEEEccCCCcEEEEEcCCCCeEEEEe-------------CcCCcE
Confidence 36799999998876444444443321 444444322 7776664445677899 788875
Q ss_pred ccc
Q 038767 314 APR 316 (336)
Q Consensus 314 ~~~ 316 (336)
...
T Consensus 325 ~~~ 327 (342)
T PF06433_consen 325 VRS 327 (342)
T ss_dssp EEE
T ss_pred Eee
Confidence 443
No 35
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.12 E-value=12 Score=34.14 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=76.2
Q ss_pred cccEEEe-CCeE-EEEeeCCCcEEEEEecC--CceeeecCC--CCccc-----ceeeEEEeCCcEEEEEEEecCcceEEE
Q 038767 175 VKNMVRA-DGFL-YCSFFSLDAIVAFNVAS--QNWEILPYP--PSILF-----MYKYLTEYDGSLLILAKVVNSSGYRVF 243 (336)
Q Consensus 175 ~~d~v~~-~G~~-Y~l~~~~g~i~~~Dl~~--~~~~~i~~p--~p~~~-----~~~~Lve~~G~LllV~~~~~~~~~~V~ 243 (336)
-+.++|+ ||++ |+++.-.+.|.+++.+. .+++.++.- .|..+ ....-+..+|+-+.+.- .....+.+|
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN-Rg~dsI~~f 271 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN-RGHDSIAVF 271 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec-CCCCeEEEE
Confidence 5678887 5665 88876436787777765 567666541 23321 22223446888776654 244689999
Q ss_pred EeecCCCceEEe--cccCC---eEEEeeCCceEEeecCCCeEEEEEeccCCcEEEecCcccccccCccccCCCccccccc
Q 038767 244 TLNRSQMDWFEI--ECLDD---RALFMGASCLWWVPVEKGCAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIR 318 (336)
Q Consensus 244 ~ld~~~~~W~~v--~~Lg~---~alFlg~~~s~~~~a~~G~IYf~~~~~~~~~vy~~~~~~~~~~~~~~~~~g~~~~~~~ 318 (336)
++|+..++-+-+ .+.++ |.+=+..+.. -+|..........||.+| =++|+...+.
T Consensus 272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~--------~Liaa~q~sd~i~vf~~d-----------~~TG~L~~~~- 331 (346)
T COG2706 272 SVDPDGGKLELVGITPTEGQFPRDFNINPSGR--------FLIAANQKSDNITVFERD-----------KETGRLTLLG- 331 (346)
T ss_pred EEcCCCCEEEEEEEeccCCcCCccceeCCCCC--------EEEEEccCCCcEEEEEEc-----------CCCceEEecc-
Confidence 999976643322 22222 3333333322 444444333345677733 5677777665
Q ss_pred ccccccccCCceeeeee
Q 038767 319 GYEYWKEEDTTQIWIQP 335 (336)
Q Consensus 319 ~~~~~~~~~~~~~Wi~p 335 (336)
.+. .-|.|+||..
T Consensus 332 ~~~----~~p~Pvcv~f 344 (346)
T COG2706 332 RYA----VVPEPVCVKF 344 (346)
T ss_pred ccc----CCCCcEEEEE
Confidence 322 1245788864
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=90.63 E-value=1.1 Score=27.66 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=31.9
Q ss_pred eEEEeCCcEEEEEEEecC--cceEEEEeecCCCceEEecccC
Q 038767 220 YLTEYDGSLLILAKVVNS--SGYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 220 ~Lve~~G~LllV~~~~~~--~~~~V~~ld~~~~~W~~v~~Lg 259 (336)
-.+..+|+|+++...... ..-.|+++|.++.+|+++.+|.
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 467789999999986542 3557888999999999998763
No 37
>PF13964 Kelch_6: Kelch motif
Probab=90.52 E-value=0.7 Score=29.17 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=27.8
Q ss_pred ccEEEeCCeEEEEeeCC------CcEEEEEecCCceeeecC
Q 038767 176 KNMVRADGFLYCSFFSL------DAIVAFNVASQNWEILPY 210 (336)
Q Consensus 176 ~d~v~~~G~~Y~l~~~~------g~i~~~Dl~~~~~~~i~~ 210 (336)
..++..+|++|++.... ..+..||+.+++|+.+..
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence 34678999999997431 478999999999999853
No 38
>PF13964 Kelch_6: Kelch motif
Probab=89.63 E-value=0.63 Score=29.40 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=31.4
Q ss_pred eEEEeCCcEEEEEEEec--CcceEEEEeecCCCceEEecccC
Q 038767 220 YLTEYDGSLLILAKVVN--SSGYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 220 ~Lve~~G~LllV~~~~~--~~~~~V~~ld~~~~~W~~v~~Lg 259 (336)
.+|..+|+|+++..... ...-.|+++|.++.+|+++.+|.
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 46778999999988543 13457888899999999998876
No 39
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=89.19 E-value=0.15 Score=45.47 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=31.9
Q ss_pred CCCCcHHHHHHHHHcC-----Ccchhccccccchhhhhccc
Q 038767 17 RSDLPLTIINLIVSRL-----YVVYQIRFRAVCKRWRSVDI 52 (336)
Q Consensus 17 Ws~LP~dll~~Il~rL-----p~~dl~rfr~VCk~Wr~~~~ 52 (336)
.+.||+|+|..|+++. ...++-++.+|||.|+-+++
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 3679999999999986 35899999999999999986
No 40
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.60 E-value=1.5 Score=24.75 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEeCCeEEEEeeCCCcEEEEEecCCc
Q 038767 179 VRADGFLYCSFFSLDAIVAFNVASQN 204 (336)
Q Consensus 179 v~~~G~~Y~l~~~~g~i~~~Dl~~~~ 204 (336)
+..+|.+|+.+.+ |.++++|..+.+
T Consensus 3 ~~~~~~v~~~~~~-g~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGSTD-GTLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcCC-CEEEEEEcccCc
Confidence 4678899998888 999999997653
No 41
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.47 E-value=10 Score=32.86 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=44.7
Q ss_pred cEEEe--CCeEEEEeeCCCcEEEEEecCCceeeecCCCCcccceeeEEE-eCCcEEEEEEEecCcceEEEEeecCCCceE
Q 038767 177 NMVRA--DGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTE-YDGSLLILAKVVNSSGYRVFTLNRSQMDWF 253 (336)
Q Consensus 177 d~v~~--~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve-~~G~LllV~~~~~~~~~~V~~ld~~~~~W~ 253 (336)
.+++. +|.||+.+...+.|+.+|+.+..-+.+..+.|.+ ..+. .+|.|++... ....++ |.++.+++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G----~~~~~~~g~l~v~~~----~~~~~~--d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNG----MAFDRPDGRLYVADS----GGIAVV--DPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEE----EEEECTTSEEEEEET----TCEEEE--ETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCce----EEEEccCCEEEEEEc----CceEEE--ecCCCcEE
Confidence 45666 7999999865379999999988766666554332 2333 3455554432 223333 66666666
Q ss_pred Eeccc
Q 038767 254 EIECL 258 (336)
Q Consensus 254 ~v~~L 258 (336)
.+.++
T Consensus 74 ~~~~~ 78 (246)
T PF08450_consen 74 VLADL 78 (246)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 66554
No 42
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=87.43 E-value=2.7 Score=36.77 Aligned_cols=100 Identities=17% Similarity=0.300 Sum_probs=62.5
Q ss_pred cCCCCeeeeeeeCC---ccccccEEEeCCeEEEEeeC--------------CCcEEEEEecCCceeeecC-C-CCcccce
Q 038767 158 PGDTTWTELRFQDN---YRYVKNMVRADGFLYCSFFS--------------LDAIVAFNVASQNWEILPY-P-PSILFMY 218 (336)
Q Consensus 158 ~g~~~W~~~~~~~~---~~~~~d~v~~~G~~Y~l~~~--------------~g~i~~~Dl~~~~~~~i~~-p-~p~~~~~ 218 (336)
-.+..|+.+..... .+.+...+..+|.+|..... ...|.++|+.++.|..-+. + .|.+-..
T Consensus 164 ~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRS 243 (392)
T KOG4693|consen 164 FATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRS 243 (392)
T ss_pred ccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccc
Confidence 34457877654321 11233345566788877531 1479999999999976422 1 1333233
Q ss_pred eeEEEeCCcEEEEEEEecC--cce-EEEEeecCCCceEEecc
Q 038767 219 KYLTEYDGSLLILAKVVNS--SGY-RVFTLNRSQMDWFEIEC 257 (336)
Q Consensus 219 ~~Lve~~G~LllV~~~~~~--~~~-~V~~ld~~~~~W~~v~~ 257 (336)
......+|++++...+... ..| ++|++|..+..|..+.-
T Consensus 244 HS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 244 HSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred cceEEEcceEEEecccchhhhhhhcceeecccccchheeeec
Confidence 3345589999999885332 233 68999999999988753
No 43
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=85.73 E-value=0.62 Score=42.10 Aligned_cols=39 Identities=18% Similarity=0.412 Sum_probs=34.0
Q ss_pred CCCCCCcHHHHHHHHHcCC-c-------chhccccccchhhhhcccc
Q 038767 15 RSRSDLPLTIINLIVSRLY-V-------VYQIRFRAVCKRWRSVDIQ 53 (336)
Q Consensus 15 ~~Ws~LP~dll~~Il~rLp-~-------~dl~rfr~VCk~Wr~~~~~ 53 (336)
..|++||+++|..|+.|.. . ++.+....||+.||.....
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 5899999999999999983 2 4788999999999998863
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=83.44 E-value=3.1 Score=25.57 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=27.2
Q ss_pred ccEEEeCCeEEEEeeCC------CcEEEEEecCCceeeec
Q 038767 176 KNMVRADGFLYCSFFSL------DAIVAFNVASQNWEILP 209 (336)
Q Consensus 176 ~d~v~~~G~~Y~l~~~~------g~i~~~Dl~~~~~~~i~ 209 (336)
..++.++|++|++.... ..+..||+.++.|+.++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 34678999999997431 37899999999999875
No 45
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=82.40 E-value=40 Score=30.97 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=64.6
Q ss_pred EEEEEccCCceEEEEEEecCCCCeeeeeeeCCcc-------ccccEEEe-CCe-EEEEeeCCCcEEEEEecC--Cceeee
Q 038767 140 IFVIWVGVMEISCISICRPGDTTWTELRFQDNYR-------YVKNMVRA-DGF-LYCSFFSLDAIVAFNVAS--QNWEIL 208 (336)
Q Consensus 140 v~~~~~~~~~~~~v~~~~~g~~~W~~~~~~~~~~-------~~~d~v~~-~G~-~Y~l~~~~g~i~~~Dl~~--~~~~~i 208 (336)
+.++++.++.. .+.-+...++.++.++..+..+ ...++++. +|+ +|+-++..+.|.+|+++. ...+.+
T Consensus 206 ~Yv~~e~s~~v-~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 206 AYVVNELSNTV-SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp EEEEETTTTEE-EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEE
T ss_pred EEEecCCCCcE-EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEE
Confidence 34444444433 2223333455666665432221 13445554 676 566665546899999954 355544
Q ss_pred cCCCCc-c-cceeeEEEeCCcEEEEEEEecCcceEEEEeecCCCceEEec
Q 038767 209 PYPPSI-L-FMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIE 256 (336)
Q Consensus 209 ~~p~p~-~-~~~~~Lve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~ 256 (336)
..- +. + ..+...+.-+|+.++|.. ..+..+.||++|.+++.+..+.
T Consensus 285 ~~~-~~~G~~Pr~~~~s~~g~~l~Va~-~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 285 QTV-PTGGKFPRHFAFSPDGRYLYVAN-QDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEE-EESSSSEEEEEE-TTSSEEEEEE-TTTTEEEEEEEETTTTEEEEEE
T ss_pred EEE-eCCCCCccEEEEeCCCCEEEEEe-cCCCeEEEEEEeCCCCcEEEec
Confidence 321 11 1 122334556899988877 4667899999999988887764
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=81.79 E-value=4 Score=25.52 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.3
Q ss_pred cEEEeCCeEEEEeeC----C----CcEEEEEecCCceeeecC
Q 038767 177 NMVRADGFLYCSFFS----L----DAIVAFNVASQNWEILPY 210 (336)
Q Consensus 177 d~v~~~G~~Y~l~~~----~----g~i~~~Dl~~~~~~~i~~ 210 (336)
.++..++++|+.... . ..+.+||+.+.+|+.+..
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 456789999988643 1 478999999999998853
No 47
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=81.62 E-value=43 Score=30.75 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=75.8
Q ss_pred cccEEEe-CC-eEEEEeeCCCcEEEEEec--CCceeeecCC--CCccc----ceeeE-EEeCCcEEEEEEEecCcceEEE
Q 038767 175 VKNMVRA-DG-FLYCSFFSLDAIVAFNVA--SQNWEILPYP--PSILF----MYKYL-TEYDGSLLILAKVVNSSGYRVF 243 (336)
Q Consensus 175 ~~d~v~~-~G-~~Y~l~~~~g~i~~~Dl~--~~~~~~i~~p--~p~~~----~~~~L-ve~~G~LllV~~~~~~~~~~V~ 243 (336)
-+.++++ +| .+|+++...+.|.+|++. ...++.++.. .|... ...-+ +.-+|+.+.|.. .....+.+|
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn-r~~~sI~vf 272 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN-RGSNSISVF 272 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE-CTTTEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe-ccCCEEEEE
Confidence 4567775 44 578887664789999998 3445544321 11111 12234 334788777765 356789999
Q ss_pred EeecCCCceEEecccCCeEEEeeCCceEEee-cCCC-eEEEEEeccCCcEEEecCcccccccCccccCCCcccccccccc
Q 038767 244 TLNRSQMDWFEIECLDDRALFMGASCLWWVP-VEKG-CAFANIMHWFGPYSYIRDQWSEFIRKPVESDSSKVAPRIRGYE 321 (336)
Q Consensus 244 ~ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~-a~~G-~IYf~~~~~~~~~vy~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 321 (336)
++|.+.++...+..+. .+...-..+. ...| .+|-.........+|+.| -++|+++... ...
T Consensus 273 ~~d~~~g~l~~~~~~~-----~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d-----------~~tG~l~~~~-~~~ 335 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVP-----TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID-----------PDTGKLTPVG-SSV 335 (345)
T ss_dssp EECTTTTTEEEEEEEE-----ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE-----------TTTTEEEEEE-EEE
T ss_pred EEecCCCceEEEEEEe-----CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe-----------CCCCcEEEec-ccc
Confidence 9988766666554322 1111111111 1235 677666555556788722 4678877665 221
Q ss_pred cccccCCceeeee
Q 038767 322 YWKEEDTTQIWIQ 334 (336)
Q Consensus 322 ~~~~~~~~~~Wi~ 334 (336)
..|.|.||.
T Consensus 336 ----~~~~p~ci~ 344 (345)
T PF10282_consen 336 ----PIPSPVCIV 344 (345)
T ss_dssp ----ESSSEEEEE
T ss_pred ----cCCCCEEEe
Confidence 124567663
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=81.54 E-value=0.73 Score=41.60 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=32.5
Q ss_pred CCCc----HHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767 18 SDLP----LTIINLIVSRLYVVYQIRFRAVCKRWRSVDI 52 (336)
Q Consensus 18 s~LP----~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~ 52 (336)
..|| +++.+.|+.-|...+|..+..|||.|+.++.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~ 114 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLS 114 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhc
Confidence 4689 9999999999999999999999999999984
No 49
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=78.27 E-value=9.9 Score=34.53 Aligned_cols=56 Identities=20% Similarity=0.380 Sum_probs=34.1
Q ss_pred CceeeecCCCCcccceeeEEEe-CCcEEEEEEEecCcceEEEEeecCCCceEE-ecccC
Q 038767 203 QNWEILPYPPSILFMYKYLTEY-DGSLLILAKVVNSSGYRVFTLNRSQMDWFE-IECLD 259 (336)
Q Consensus 203 ~~~~~i~~p~p~~~~~~~Lve~-~G~LllV~~~~~~~~~~V~~ld~~~~~W~~-v~~Lg 259 (336)
..|..-..-.|.+.....++|. +|+|+|+.. |....-+||+-......|++ +.+|.
T Consensus 160 ~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~-c~~g~rrVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 160 KTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTA-CDDGRRRVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp SS-EE-S----TT-EEEEEEEE-TTEEEEEEE--TTS---EEEESSTTSS-EE-TTTTT
T ss_pred cceEeccccCCCCcceEEEEeccCCeeEEEEe-cccceEEEEEEcccceehhhccCccc
Confidence 4577643322444457889999 899999999 56666799998888888998 45655
No 50
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=77.30 E-value=60 Score=29.91 Aligned_cols=87 Identities=16% Similarity=0.299 Sum_probs=49.9
Q ss_pred EEEeCCeEEEEeeCCC----------c--EEEEEe------cCC--ceeeecCCCCcc--c------ceeeEEEeCCcEE
Q 038767 178 MVRADGFLYCSFFSLD----------A--IVAFNV------ASQ--NWEILPYPPSIL--F------MYKYLTEYDGSLL 229 (336)
Q Consensus 178 ~v~~~G~~Y~l~~~~g----------~--i~~~Dl------~~~--~~~~i~~p~p~~--~------~~~~Lve~~G~Ll 229 (336)
.+..+|+||+++..+. . +++++. ..+ .|+.++.| |.. . -..|-|- +|.=+
T Consensus 113 sv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P-Pf~~~~~~~~~~i~sYavv-~g~~I 190 (342)
T PF07893_consen 113 SVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP-PFVRDRRYSDYRITSYAVV-DGRTI 190 (342)
T ss_pred EEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC-CccccCCcccceEEEEEEe-cCCeE
Confidence 3557999999986421 2 233331 112 26666544 432 1 3456565 77766
Q ss_pred EEEEEecCcceEEEEeecCCCceEEecc--cC--CeEEEeeCC
Q 038767 230 ILAKVVNSSGYRVFTLNRSQMDWFEIEC--LD--DRALFMGAS 268 (336)
Q Consensus 230 lV~~~~~~~~~~V~~ld~~~~~W~~v~~--Lg--~~alFlg~~ 268 (336)
.|..... .---|-+|-++.+|.++.+ |+ |+|-|++..
T Consensus 191 ~vS~~~~--~~GTysfDt~~~~W~~~GdW~LPF~G~a~y~~el 231 (342)
T PF07893_consen 191 FVSVNGR--RWGTYSFDTESHEWRKHGDWMLPFHGQAEYVPEL 231 (342)
T ss_pred EEEecCC--ceEEEEEEcCCcceeeccceecCcCCccEECCCc
Confidence 6655211 1247888998999999843 43 566666543
No 51
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=77.30 E-value=13 Score=32.66 Aligned_cols=82 Identities=10% Similarity=0.081 Sum_probs=51.6
Q ss_pred EEEEecCCCCeeeeeeeCCccc---cccEEEeCCeEEEEeeCC-------CcEEEEEecCCceeeecCCC--Ccccceee
Q 038767 153 ISICRPGDTTWTELRFQDNYRY---VKNMVRADGFLYCSFFSL-------DAIVAFNVASQNWEILPYPP--SILFMYKY 220 (336)
Q Consensus 153 v~~~~~g~~~W~~~~~~~~~~~---~~d~v~~~G~~Y~l~~~~-------g~i~~~Dl~~~~~~~i~~p~--p~~~~~~~ 220 (336)
|......++.|+........+- ..+...+||++|...... ..++.||+.+..|++|..-- |.--.+..
T Consensus 218 i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC 297 (392)
T KOG4693|consen 218 IMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQC 297 (392)
T ss_pred eEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCccccee
Confidence 3455567789987643322232 344556899999987421 47899999999999986411 11112233
Q ss_pred EEEeCCcEEEEEEE
Q 038767 221 LTEYDGSLLILAKV 234 (336)
Q Consensus 221 Lve~~G~LllV~~~ 234 (336)
-+.++|+++|....
T Consensus 298 ~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 298 SVVSGGKVYLFGGT 311 (392)
T ss_pred EEEECCEEEEecCC
Confidence 45578888887653
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=77.18 E-value=1.1 Score=41.71 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=32.2
Q ss_pred CCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767 19 DLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI 52 (336)
Q Consensus 19 ~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~ 52 (336)
.||+|++..|+.-|..+.+.|.+.||+.|+-.+.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~Al 107 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLAL 107 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Confidence 5899999999999999999999999999999884
No 53
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=75.98 E-value=5.4 Score=24.78 Aligned_cols=35 Identities=11% Similarity=0.274 Sum_probs=20.4
Q ss_pred CCcEEEEEEEecC--cceEEEEeecCCCceEEecccC
Q 038767 225 DGSLLILAKVVNS--SGYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 225 ~G~LllV~~~~~~--~~~~V~~ld~~~~~W~~v~~Lg 259 (336)
++.|+++...... ..=++|.+|.++++|+++.+++
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 5788888875433 2336888999999999986553
No 54
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=75.52 E-value=16 Score=33.35 Aligned_cols=75 Identities=24% Similarity=0.314 Sum_probs=47.7
Q ss_pred eCCeE-EEEeeCCCcEEEEEec--CCceeeecCCCCcc-cceeeEEEeCCcEEEEEEEecCcceEEEEeecCCCceEEec
Q 038767 181 ADGFL-YCSFFSLDAIVAFNVA--SQNWEILPYPPSIL-FMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIE 256 (336)
Q Consensus 181 ~~G~~-Y~l~~~~g~i~~~Dl~--~~~~~~i~~p~p~~-~~~~~Lve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~ 256 (336)
.+|+| |+-++.-..|.+|.++ +...+.+..-+-.+ +.+.+-...+|++++|.. ..+..+.||+.|.++++..+..
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~-q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN-QKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc-cCCCcEEEEEEcCCCceEEecc
Confidence 68876 5555432467777664 34444433211111 234466778899988888 4667899999999998776653
No 55
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=74.01 E-value=5.1 Score=23.61 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=17.9
Q ss_pred CeEEEEeeCCCcEEEEEecCCc--eee
Q 038767 183 GFLYCSFFSLDAIVAFNVASQN--WEI 207 (336)
Q Consensus 183 G~~Y~l~~~~g~i~~~Dl~~~~--~~~ 207 (336)
|++|+-+.+ |.|+++|..+.+ |+.
T Consensus 1 ~~v~~~~~~-g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVGTPD-GYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEETTT-SEEEEEETTTTSEEEEE
T ss_pred CEEEEeCCC-CEEEEEECCCCCEEEee
Confidence 567777666 889999988764 654
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=71.91 E-value=87 Score=29.25 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=24.1
Q ss_pred cccEEEeCCeEEEEeeCCCcEEEEEecCCc
Q 038767 175 VKNMVRADGFLYCSFFSLDAIVAFNVASQN 204 (336)
Q Consensus 175 ~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~ 204 (336)
....+..+|.+|+.+.+ |.|+++|..+.+
T Consensus 328 ~~sp~v~~g~l~v~~~~-G~l~~ld~~tG~ 356 (394)
T PRK11138 328 LTAPVLYNGYLVVGDSE-GYLHWINREDGR 356 (394)
T ss_pred ccCCEEECCEEEEEeCC-CEEEEEECCCCC
Confidence 45567789999999888 999999997754
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=69.52 E-value=68 Score=27.06 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=30.6
Q ss_pred ecCCCCeee-eeeeCCccc--cccEEEeCCeEEEEeeCCCcEEEEEecCCc--eee
Q 038767 157 RPGDTTWTE-LRFQDNYRY--VKNMVRADGFLYCSFFSLDAIVAFNVASQN--WEI 207 (336)
Q Consensus 157 ~~g~~~W~~-~~~~~~~~~--~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~--~~~ 207 (336)
+.|...|+. ....+.... .....+.++.+|+.... +.|+++|+.+.. |+.
T Consensus 94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-GKLVALDPKTGKLLWKY 148 (238)
T ss_dssp TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-SEEEEEETTTTEEEEEE
T ss_pred CCcceeeeeccccccccccccccCceEecCEEEEEecc-CcEEEEecCCCcEEEEe
Confidence 355668884 322121222 23445568888888877 899999998764 554
No 58
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=68.47 E-value=91 Score=28.12 Aligned_cols=70 Identities=9% Similarity=0.000 Sum_probs=39.8
Q ss_pred eEEEEeeCCCcEEEEEecC-CceeeecCCCCcccceeeEE-EeCCcEEEEEEEecCcceEEEEeecCCCceEEec
Q 038767 184 FLYCSFFSLDAIVAFNVAS-QNWEILPYPPSILFMYKYLT-EYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIE 256 (336)
Q Consensus 184 ~~Y~l~~~~g~i~~~Dl~~-~~~~~i~~p~p~~~~~~~Lv-e~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~ 256 (336)
.+|+.+...+.|.+||+.+ .+++.+... +......+|. .-+|+.+.|... ....+.+|.++ +.+++..+.
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~-~~~~i~~~~~~-~~g~l~~~~ 74 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVR-PEFRVLSYRIA-DDGALTFAA 74 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEEC-CCCcEEEEEEC-CCCceEEee
Confidence 4687765437899999964 345444321 1111222343 346877666542 45678889887 445555444
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=67.49 E-value=1.6 Score=42.88 Aligned_cols=38 Identities=26% Similarity=0.247 Sum_probs=34.8
Q ss_pred CCCCCCcHHHHHHHHHcCCcchhccccccchhhhhccc
Q 038767 15 RSRSDLPLTIINLIVSRLYVVYQIRFRAVCKRWRSVDI 52 (336)
Q Consensus 15 ~~Ws~LP~dll~~Il~rLp~~dl~rfr~VCk~Wr~~~~ 52 (336)
.--+.||.|+...|+..|+..++++.++||+.|+.++.
T Consensus 106 dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~ 143 (537)
T KOG0274|consen 106 DFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLD 143 (537)
T ss_pred chhhcccchhcccccccCCHHHhhhhhhhcchhhhhhh
Confidence 33578999999999999999999999999999999984
No 60
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=65.29 E-value=23 Score=32.12 Aligned_cols=54 Identities=9% Similarity=0.121 Sum_probs=38.6
Q ss_pred cccEEEeCCeEEEEeeCCCcEEEEEecCCceeeecC-CC-CcccceeeEEEeCCcEEEEEEE
Q 038767 175 VKNMVRADGFLYCSFFSLDAIVAFNVASQNWEILPY-PP-SILFMYKYLTEYDGSLLILAKV 234 (336)
Q Consensus 175 ~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~-p~-p~~~~~~~Lve~~G~LllV~~~ 234 (336)
....-.++|++|+++...|.+..+|++++.++.+.. |. |.+ |. ..|++++|...
T Consensus 205 PhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rG-----L~-f~G~llvVgmS 260 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRG-----LA-FAGDFAFVGLS 260 (335)
T ss_pred CcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcc-----cc-eeCCEEEEEec
Confidence 456678999999999776999999998777776543 21 222 11 11999988874
No 61
>PF13013 F-box-like_2: F-box-like domain
Probab=61.98 E-value=5.2 Score=30.18 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=29.1
Q ss_pred cccccccCCCCCCcHHHHHHHHHcCCcchhccccccch---hhhhc
Q 038767 8 KKQKLERRSRSDLPLTIINLIVSRLYVVYQIRFRAVCK---RWRSV 50 (336)
Q Consensus 8 ~~~~~~~~~Ws~LP~dll~~Il~rLp~~dl~rfr~VCk---~Wr~~ 50 (336)
|+++-..-.-.+||.||+..|+..-.-++++..-..|+ +|+..
T Consensus 13 kp~~~~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~ 58 (109)
T PF13013_consen 13 KPPNRQSLTLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH 58 (109)
T ss_pred CCCCccccchhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 34444444577899999999999997666655555554 44444
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=61.41 E-value=1.3e+02 Score=27.60 Aligned_cols=117 Identities=9% Similarity=0.088 Sum_probs=65.1
Q ss_pred eCCeEEEEeeCCCcEEEEEecCCceeeecCCCCcc-cceeeEEEeCCcEEEEEEEecC--------cceEEEEee-----
Q 038767 181 ADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSIL-FMYKYLTEYDGSLLILAKVVNS--------SGYRVFTLN----- 246 (336)
Q Consensus 181 ~~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p~p~~-~~~~~Lve~~G~LllV~~~~~~--------~~~~V~~ld----- 246 (336)
++.++.+++.. +.+.+||..+...... |.... ......+.-+|+|++....... ..|++...+
T Consensus 75 ~gskIv~~d~~-~~t~vyDt~t~av~~~--P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~ 151 (342)
T PF07893_consen 75 HGSKIVAVDQS-GRTLVYDTDTRAVATG--PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD 151 (342)
T ss_pred cCCeEEEEcCC-CCeEEEECCCCeEecc--CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence 57788888877 8899999988754433 22111 1223455568889988875211 167777444
Q ss_pred ---cCCCceEEecccCCeEEEeeCCce----EEeec-CCC-eEEEEEec-cCCcEEEecCcccccccCccccCCCccccc
Q 038767 247 ---RSQMDWFEIECLDDRALFMGASCL----WWVPV-EKG-CAFANIMH-WFGPYSYIRDQWSEFIRKPVESDSSKVAPR 316 (336)
Q Consensus 247 ---~~~~~W~~v~~Lg~~alFlg~~~s----~~~~a-~~G-~IYf~~~~-~~~~~vy~~~~~~~~~~~~~~~~~g~~~~~ 316 (336)
.+.-.|..+..-+ |...... ...-| ..| .|+.+-.. ..+...|| ..++.|++.
T Consensus 152 ~~~~~~w~W~~LP~PP----f~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfD-------------t~~~~W~~~ 214 (342)
T PF07893_consen 152 PSPEESWSWRSLPPPP----FVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFD-------------TESHEWRKH 214 (342)
T ss_pred ccCCCcceEEcCCCCC----ccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEE-------------cCCcceeec
Confidence 1233566644322 4433211 21112 246 88885522 12455777 777777765
Q ss_pred c
Q 038767 317 I 317 (336)
Q Consensus 317 ~ 317 (336)
-
T Consensus 215 G 215 (342)
T PF07893_consen 215 G 215 (342)
T ss_pred c
Confidence 4
No 63
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=59.72 E-value=1.2e+02 Score=26.55 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=49.1
Q ss_pred ccEEEeCCeEEEEeeCCCcEEEEEecCCcee---eecCCC-----Cccc---ceeeEEEeCCcEEEEEEEecCc-ceEEE
Q 038767 176 KNMVRADGFLYCSFFSLDAIVAFNVASQNWE---ILPYPP-----SILF---MYKYLTEYDGSLLILAKVVNSS-GYRVF 243 (336)
Q Consensus 176 ~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~~~---~i~~p~-----p~~~---~~~~Lve~~G~LllV~~~~~~~-~~~V~ 243 (336)
..-|.+||.||.....+..|+.||+.++.-. .++.+. |..+ ...-|..-+..|.++....... .+.|=
T Consensus 72 tG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvs 151 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVS 151 (250)
T ss_pred CCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEE
Confidence 4557799999998776579999999987643 343221 1111 2223433367788887754433 59999
Q ss_pred EeecCCCc
Q 038767 244 TLNRSQMD 251 (336)
Q Consensus 244 ~ld~~~~~ 251 (336)
|||+++..
T Consensus 152 kld~~tL~ 159 (250)
T PF02191_consen 152 KLDPETLS 159 (250)
T ss_pred eeCcccCc
Confidence 99986543
No 64
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=58.03 E-value=30 Score=30.98 Aligned_cols=84 Identities=12% Similarity=-0.036 Sum_probs=50.0
Q ss_pred EEEeCCcEEEEEEEec--------CcceEEEEeecCCCceEEecccCCeEEEeeC-CceEEeecCCC-----eEEEEEec
Q 038767 221 LTEYDGSLLILAKVVN--------SSGYRVFTLNRSQMDWFEIECLDDRALFMGA-SCLWWVPVEKG-----CAFANIMH 286 (336)
Q Consensus 221 Lve~~G~LllV~~~~~--------~~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~-~~s~~~~a~~G-----~IYf~~~~ 286 (336)
-++.+|+|.++..-.- ...-++..+|..+.+-.+...++..++--+. -..+.+...++ -+|.+|..
T Consensus 7 ~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~ 86 (287)
T PF03022_consen 7 QIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG 86 (287)
T ss_dssp EE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT
T ss_pred EEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC
Confidence 3566788888876321 1235788888888888888888865544111 11233333232 69999976
Q ss_pred cCCcEEEecCcccccccCccccCCCcccccc
Q 038767 287 WFGPYSYIRDQWSEFIRKPVESDSSKVAPRI 317 (336)
Q Consensus 287 ~~~~~vy~~~~~~~~~~~~~~~~~g~~~~~~ 317 (336)
.+++-||| +.+|+..++.
T Consensus 87 ~~glIV~d-------------l~~~~s~Rv~ 104 (287)
T PF03022_consen 87 GPGLIVYD-------------LATGKSWRVL 104 (287)
T ss_dssp TCEEEEEE-------------TTTTEEEEEE
T ss_pred cCcEEEEE-------------ccCCcEEEEe
Confidence 67778999 8888776665
No 65
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=57.19 E-value=7 Score=28.64 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=22.3
Q ss_pred CCCCCCcHHHHHHHHHcCCcchhcc
Q 038767 15 RSRSDLPLTIINLIVSRLYVVYQIR 39 (336)
Q Consensus 15 ~~Ws~LP~dll~~Il~rLp~~dl~r 39 (336)
..|..||.|+-..|+..|+-.|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999888743
No 66
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=56.68 E-value=17 Score=22.61 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=22.0
Q ss_pred CcEEEEEEEe-cC--cceEEEEeecCCCceEEecccC
Q 038767 226 GSLLILAKVV-NS--SGYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 226 G~LllV~~~~-~~--~~~~V~~ld~~~~~W~~v~~Lg 259 (336)
++|++..... .+ ..=++|++|.++.+|+++.+++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P 38 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLP 38 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCC
Confidence 4455555532 11 2336889999999999996654
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=55.98 E-value=1.9e+02 Score=27.53 Aligned_cols=83 Identities=16% Similarity=0.251 Sum_probs=50.8
Q ss_pred cccEEEeCCeEEEE-eeCCCcEEEEEecCC-ceeeecCCCCcccceeeEEEeCCcEEEEEEEecCcceEEEEeecCCCce
Q 038767 175 VKNMVRADGFLYCS-FFSLDAIVAFNVASQ-NWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDW 252 (336)
Q Consensus 175 ~~d~v~~~G~~Y~l-~~~~g~i~~~Dl~~~-~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~~~~~V~~ld~~~~~W 252 (336)
+..+.|-++-.|.+ ..+.+.|..+|+... .+..++.+.-.. ...+-.+-.|..+.+. +..+.||..+..+..|
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~-v~s~~fD~SGt~L~~~----g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKE-VNSLSFDQSGTYLGIA----GSDLQVYICKKKTKSW 466 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccc-ceeEEEcCCCCeEEee----cceeEEEEEecccccc
Confidence 55566643333333 333267999999764 355554432110 1123344567776654 4679999999999999
Q ss_pred EEecccCCeE
Q 038767 253 FEIECLDDRA 262 (336)
Q Consensus 253 ~~v~~Lg~~a 262 (336)
.++..+.+..
T Consensus 467 ~~~~~~~~~s 476 (506)
T KOG0289|consen 467 TEIKELADHS 476 (506)
T ss_pred eeeehhhhcc
Confidence 9998877644
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=51.93 E-value=2e+02 Score=26.79 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=34.3
Q ss_pred ccEEEeCCeEEEEeeCCCcEEEEEecCCc--eee-ecCCC-Cc-ccceeeEEEeCCcEEEEEE
Q 038767 176 KNMVRADGFLYCSFFSLDAIVAFNVASQN--WEI-LPYPP-SI-LFMYKYLTEYDGSLLILAK 233 (336)
Q Consensus 176 ~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~--~~~-i~~p~-p~-~~~~~~Lve~~G~LllV~~ 233 (336)
...+..+|.+|+.+.. |.++++|+.+.+ |+. +..+. +. .....|++..+|+|+.+..
T Consensus 250 ~sP~v~~~~vy~~~~~-g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 250 TTPVVVGGVVYALAYN-GNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred CCcEEECCEEEEEEcC-CeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEEC
Confidence 4566778888887777 888888887643 653 21111 11 1234556666677766654
No 69
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=51.44 E-value=1.1e+02 Score=27.88 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=47.8
Q ss_pred EEEeCCeEEEEeeCC-------CcEEEEEecCCceeeecCCCC-cccceeeEEEe-CCcEEEEEEEecCcceEEEEeecC
Q 038767 178 MVRADGFLYCSFFSL-------DAIVAFNVASQNWEILPYPPS-ILFMYKYLTEY-DGSLLILAKVVNSSGYRVFTLNRS 248 (336)
Q Consensus 178 ~v~~~G~~Y~l~~~~-------g~i~~~Dl~~~~~~~i~~p~p-~~~~~~~Lve~-~G~LllV~~~~~~~~~~V~~ld~~ 248 (336)
++.-+|.+++..... ..++..|-..++|+....+.+ .......++|. +|+|+++.+........+++-+..
T Consensus 152 i~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~D~ 231 (351)
T cd00260 152 IQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESRDM 231 (351)
T ss_pred EEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEcCC
Confidence 334468776554310 122223333457976443322 22345668887 899999988532456667777767
Q ss_pred CCceEEeccc
Q 038767 249 QMDWFEIECL 258 (336)
Q Consensus 249 ~~~W~~v~~L 258 (336)
...|.+....
T Consensus 232 G~tWs~~~~~ 241 (351)
T cd00260 232 GTTWTEALGT 241 (351)
T ss_pred CcCcccCcCC
Confidence 7889987554
No 70
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=50.60 E-value=1.8e+02 Score=26.84 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=32.7
Q ss_pred cccEEEeCCeEEEEeeCCCcEEEEEecCCc--eeee-cCC-CCc-ccceeeEEEeCCcEEEEEE
Q 038767 175 VKNMVRADGFLYCSFFSLDAIVAFNVASQN--WEIL-PYP-PSI-LFMYKYLTEYDGSLLILAK 233 (336)
Q Consensus 175 ~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~--~~~i-~~p-~p~-~~~~~~Lve~~G~LllV~~ 233 (336)
....++.+|.+|+.+.. |.++++|+.+.+ |+.- ... .|. .....|+...+|.|+.+..
T Consensus 234 ~~~p~~~~~~vy~~~~~-g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 234 DGDPVVDGGQVYAVSYQ-GRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred CCccEEECCEEEEEEcC-CEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEEC
Confidence 34556678888887777 888888886543 5432 111 121 1123444445566666654
No 71
>PTZ00334 trans-sialidase; Provisional
Probab=49.29 E-value=61 Score=33.32 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=45.9
Q ss_pred EEEeCCeEEEEee--C-CCc---EEEEEecCCceeeecCCCCcccceeeEEEeC-CcEEEEEEEecCcceEEEEeecCCC
Q 038767 178 MVRADGFLYCSFF--S-LDA---IVAFNVASQNWEILPYPPSILFMYKYLTEYD-GSLLILAKVVNSSGYRVFTLNRSQM 250 (336)
Q Consensus 178 ~v~~~G~~Y~l~~--~-~g~---i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~-G~LllV~~~~~~~~~~V~~ld~~~~ 250 (336)
++--||.|-+--. + .+. ++.|.-++..|..-..-.|.+.....++|.+ |+|+|+.. |.+..-+||+-.....
T Consensus 266 I~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~gC~~P~I~EWe~gkLlM~t~-C~dG~RrVYES~DmG~ 344 (780)
T PTZ00334 266 VQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSADGCSDPSVVEWKEGKLMMMTA-CDDGRRRVYESGDKGD 344 (780)
T ss_pred EEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCCCCCCCEEEEEcCCeEEEEEE-eCCCCEEEEEECCCCC
Confidence 4455676544321 1 132 3344334446864332223334567799996 99999988 5555568998877677
Q ss_pred ceEEe
Q 038767 251 DWFEI 255 (336)
Q Consensus 251 ~W~~v 255 (336)
.|.|.
T Consensus 345 tWtEA 349 (780)
T PTZ00334 345 SWTEA 349 (780)
T ss_pred ChhhC
Confidence 78764
No 72
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=48.23 E-value=2.1e+02 Score=25.76 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=38.3
Q ss_pred CCe-EEEEeeCCCcEEEEEecC-CceeeecCCCCcccceeeEEEe-CCcEEEEEEEecCcceEEEEeecC
Q 038767 182 DGF-LYCSFFSLDAIVAFNVAS-QNWEILPYPPSILFMYKYLTEY-DGSLLILAKVVNSSGYRVFTLNRS 248 (336)
Q Consensus 182 ~G~-~Y~l~~~~g~i~~~Dl~~-~~~~~i~~p~p~~~~~~~Lve~-~G~LllV~~~~~~~~~~V~~ld~~ 248 (336)
+|+ +|+.+...+.|.+|++.. ..++.+... +......+++-. +|+.+.+..+ ....+.||.++..
T Consensus 45 d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~-~~~~v~v~~~~~~ 112 (330)
T PRK11028 45 DKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASY-NANCVSVSPLDKD 112 (330)
T ss_pred CCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEc-CCCeEEEEEECCC
Confidence 454 677665337899999863 345544321 111122456543 7887777663 4568889988754
No 73
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.01 E-value=73 Score=29.36 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=46.2
Q ss_pred cCCCCeeeeeeeCCcc-ccccEEEeCCeEEEEeeC-------C---CcEEEEEecCCceeeecCCCCcccceeeEEEeCC
Q 038767 158 PGDTTWTELRFQDNYR-YVKNMVRADGFLYCSFFS-------L---DAIVAFNVASQNWEILPYPPSILFMYKYLTEYDG 226 (336)
Q Consensus 158 ~g~~~W~~~~~~~~~~-~~~d~v~~~G~~Y~l~~~-------~---g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G 226 (336)
...+.|+.+..-+.-. -..-.++.+|+||+.... + ..++.||+..++|+.++.-.|.+.....-+..+|
T Consensus 67 ~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~ 146 (381)
T COG3055 67 KPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNG 146 (381)
T ss_pred cCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCC
Confidence 3467899887543111 122346899999998742 0 2678999999999988765565421111122233
Q ss_pred -cEEEEEEE
Q 038767 227 -SLLILAKV 234 (336)
Q Consensus 227 -~LllV~~~ 234 (336)
++++...+
T Consensus 147 ~~i~f~GGv 155 (381)
T COG3055 147 TKIYFFGGV 155 (381)
T ss_pred ceEEEEccc
Confidence 66666553
No 74
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=46.57 E-value=2.2e+02 Score=25.57 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=41.5
Q ss_pred EEEEecCCCCeeeeeeeCCccccccE-EEeCCeEEEEeeCCCcEEEEEecCCceeeecCCCCc
Q 038767 153 ISICRPGDTTWTELRFQDNYRYVKNM-VRADGFLYCSFFSLDAIVAFNVASQNWEILPYPPSI 214 (336)
Q Consensus 153 v~~~~~g~~~W~~~~~~~~~~~~~d~-v~~~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p~p~ 214 (336)
+..++|.+.+|.+...+..-.--.++ |=..|+++.-....+.|..||+.+..|++++.|.|.
T Consensus 256 l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 256 LHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred eeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCCC
Confidence 37788999999987754211111222 223567776555448999999999999999776543
No 75
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=43.73 E-value=1.9e+02 Score=24.16 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=24.4
Q ss_pred ccEEEeCCeEEEEeeCCCcEEEEEecCCc--eee
Q 038767 176 KNMVRADGFLYCSFFSLDAIVAFNVASQN--WEI 207 (336)
Q Consensus 176 ~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~--~~~ 207 (336)
...+..+|.+|+.+.. +.|.++|..+.+ |+.
T Consensus 70 ~~~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 70 GAPVVDGGRVYVGTSD-GSLYALDAKTGKVLWSI 102 (238)
T ss_dssp SGEEEETTEEEEEETT-SEEEEEETTTSCEEEEE
T ss_pred ceeeecccccccccce-eeeEecccCCcceeeee
Confidence 3357889999999877 899999976653 773
No 76
>PTZ00486 apyrase Superfamily; Provisional
Probab=42.74 E-value=89 Score=28.75 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=24.4
Q ss_pred cccEEEeCCeEEEEeeCCCcEEEEEecCC
Q 038767 175 VKNMVRADGFLYCSFFSLDAIVAFNVASQ 203 (336)
Q Consensus 175 ~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~ 203 (336)
.+..+.+||+||.++..+|-|+.++...+
T Consensus 117 LSELv~FngkLys~DDrTGiVy~i~~~~~ 145 (352)
T PTZ00486 117 LSELVSFNGKLYGFDDRTGIVYEIDIDKK 145 (352)
T ss_pred hhhhheeCCEEEEEeCCceEEEEEEcCCC
Confidence 56788999999999877699999987665
No 77
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=41.33 E-value=2.5e+02 Score=25.79 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=22.0
Q ss_pred cccEEEeCCeEEEEeeCCCcEEEEEecCCc
Q 038767 175 VKNMVRADGFLYCSFFSLDAIVAFNVASQN 204 (336)
Q Consensus 175 ~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~ 204 (336)
....+..+|.+|+.+.+ |.|+++|..+.+
T Consensus 313 ~ssp~i~g~~l~~~~~~-G~l~~~d~~tG~ 341 (377)
T TIGR03300 313 LTAPAVVGGYLVVGDFE-GYLHWLSREDGS 341 (377)
T ss_pred cccCEEECCEEEEEeCC-CEEEEEECCCCC
Confidence 34456678899988888 899999987653
No 78
>smart00612 Kelch Kelch domain.
Probab=41.27 E-value=39 Score=20.00 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=16.7
Q ss_pred eEEEEeecCCCceEEecccC
Q 038767 240 YRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 240 ~~V~~ld~~~~~W~~v~~Lg 259 (336)
-.|+..|.++.+|.++.+|.
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~ 34 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMP 34 (47)
T ss_pred eeEEEECCCCCeEccCCCCC
Confidence 46777899999999998876
No 79
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=40.78 E-value=2.8e+02 Score=25.15 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=21.2
Q ss_pred CCeEEEEeeCCCcEEEEEecCCceeeecCC
Q 038767 182 DGFLYCSFFSLDAIVAFNVASQNWEILPYP 211 (336)
Q Consensus 182 ~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p 211 (336)
.+.+||.+..-++|+.+|+.+..-+....|
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p 65 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETGKKRVFPSP 65 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcCceEEEECC
Confidence 356898886537999999986655555443
No 80
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=37.90 E-value=89 Score=18.96 Aligned_cols=27 Identities=7% Similarity=0.316 Sum_probs=21.0
Q ss_pred ccEEEeCCeEEEEeeCCCcEEEEEecCC
Q 038767 176 KNMVRADGFLYCSFFSLDAIVAFNVASQ 203 (336)
Q Consensus 176 ~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~ 203 (336)
.++...++..|+.... +.+.++|++..
T Consensus 5 ~~v~v~g~yaYva~~~-~Gl~IvDISnP 31 (42)
T PF08309_consen 5 RDVAVSGNYAYVADGN-NGLVIVDISNP 31 (42)
T ss_pred EEEEEECCEEEEEeCC-CCEEEEECCCC
Confidence 4566778888988776 78999999863
No 81
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=37.05 E-value=1.9e+02 Score=22.12 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=43.0
Q ss_pred cEEEEEecCC--ceeeecCCCCcc------------cceeeEEEeCCcEEEEEEEec--------CcceEEEEeec---C
Q 038767 194 AIVAFNVASQ--NWEILPYPPSIL------------FMYKYLTEYDGSLLILAKVVN--------SSGYRVFTLNR---S 248 (336)
Q Consensus 194 ~i~~~Dl~~~--~~~~i~~p~p~~------------~~~~~Lve~~G~LllV~~~~~--------~~~~~V~~ld~---~ 248 (336)
.|+.+|+-.+ .++.|+.|.+.. .....+.-++|.|-.|..... +..+..|.|.. +
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 4777887654 467776664321 122345557899988887532 24678899987 5
Q ss_pred CCceEEecccC
Q 038767 249 QMDWFEIECLD 259 (336)
Q Consensus 249 ~~~W~~v~~Lg 259 (336)
...|.+-..+.
T Consensus 87 ~~~W~~d~~v~ 97 (131)
T PF07762_consen 87 SWEWKKDCEVD 97 (131)
T ss_pred CCCEEEeEEEE
Confidence 78899876544
No 82
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=37.02 E-value=3.3e+02 Score=26.38 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=36.1
Q ss_pred cEEEeCCeEEEEeeCCCcEEEEEecCCc--eeeecCCCCcccceeeEEEeCCcEEEEEEE
Q 038767 177 NMVRADGFLYCSFFSLDAIVAFNVASQN--WEILPYPPSILFMYKYLTEYDGSLLILAKV 234 (336)
Q Consensus 177 d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~--~~~i~~p~p~~~~~~~Lve~~G~LllV~~~ 234 (336)
.++..+|.+|+-+.+ |.|++||..+.+ |+. +.+.+. .....+...+|+|+++...
T Consensus 401 ~~~~~g~~v~~g~~d-G~l~ald~~tG~~lW~~-~~~~~~-~a~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 401 SLATAGNLVFAGAAD-GYFRAFDATTGKELWKF-RTPSGI-QATPMTYEVNGKQYVGVMV 457 (488)
T ss_pred ceEecCCeEEEECCC-CeEEEEECCCCceeeEE-ECCCCc-eEcCEEEEeCCEEEEEEEe
Confidence 456778889988877 999999997754 653 222111 1223344568888888773
No 83
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=36.58 E-value=1.2e+02 Score=27.09 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=31.0
Q ss_pred cccEEEeCCeEEEEeeCCCcEEEEEecCCc-eeeecCCC---CcccceeeEEEeCCcEEEEE
Q 038767 175 VKNMVRADGFLYCSFFSLDAIVAFNVASQN-WEILPYPP---SILFMYKYLTEYDGSLLILA 232 (336)
Q Consensus 175 ~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~-~~~i~~p~---p~~~~~~~Lve~~G~LllV~ 232 (336)
.++.+.+||+||.++..+|-|+.++-..-. |-.+..-. ..+....++..-+++|++-.
T Consensus 56 LSELv~FngkLys~DDrTGiVyeI~~~~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs 117 (291)
T PF06079_consen 56 LSELVVFNGKLYSFDDRTGIVYEIKGDKAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGS 117 (291)
T ss_dssp EEEEEEETTEEEEEETTT-EEEEEETTEEEEEEE-BSTTTTESSB----EEEEETTEEEEE-
T ss_pred eeeeeeECCEEeeeeCCCceEEEEeCCceeceEEEeCCCCCccccccceeeEEeCCeeeecc
Confidence 678899999999998766877777554221 33332100 01123344555566666544
No 84
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=36.48 E-value=1.7e+02 Score=29.12 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=50.2
Q ss_pred CCeEEEEeeCCCcEEEEEecCCceee----ecCCCCcccce-eeEEEeCCcEEEEEEEecCcceEEEEeecCCCceEEec
Q 038767 182 DGFLYCSFFSLDAIVAFNVASQNWEI----LPYPPSILFMY-KYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIE 256 (336)
Q Consensus 182 ~G~~Y~l~~~~g~i~~~Dl~~~~~~~----i~~p~p~~~~~-~~Lve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~ 256 (336)
...||+.+.. |.|..||.....++. +..| +.++.. .-|+=..|+..+|.. .++...++|.+...+.
T Consensus 64 eHiLavadE~-G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsa-sGDsT~r~Wdvk~s~l------ 134 (720)
T KOG0321|consen 64 EHILAVADED-GGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSA-SGDSTIRPWDVKTSRL------ 134 (720)
T ss_pred cceEEEecCC-Cceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEc-cCCceeeeeeecccee------
Confidence 4468888887 999999998766661 1112 112221 123323599999988 4667889997765432
Q ss_pred ccCCeEEEeeCCceE
Q 038767 257 CLDDRALFMGASCLW 271 (336)
Q Consensus 257 ~Lg~~alFlg~~~s~ 271 (336)
.|.+ +|+|+.+|+
T Consensus 135 -~G~~-~~~GH~~Sv 147 (720)
T KOG0321|consen 135 -VGGR-LNLGHTGSV 147 (720)
T ss_pred -ecce-eeccccccc
Confidence 2444 899988765
No 85
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.70 E-value=2.5e+02 Score=26.01 Aligned_cols=35 Identities=9% Similarity=0.317 Sum_probs=20.4
Q ss_pred CCcEEEEEEEecC--c--ceEEEEeecCCCceEEecccC
Q 038767 225 DGSLLILAKVVNS--S--GYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 225 ~G~LllV~~~~~~--~--~~~V~~ld~~~~~W~~v~~Lg 259 (336)
+.+|.+|...... + ..++..+.....+|.++..|.
T Consensus 228 ~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp 266 (381)
T COG3055 228 GNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLP 266 (381)
T ss_pred CCeEEEEcceecCCccccceeEEEeccCceeeeeccCCC
Confidence 3458888765322 3 344444455667899885543
No 86
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=35.69 E-value=2.3e+02 Score=24.92 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=12.5
Q ss_pred CeEEEEeeCCCcEEEEEecC
Q 038767 183 GFLYCSFFSLDAIVAFNVAS 202 (336)
Q Consensus 183 G~~Y~l~~~~g~i~~~Dl~~ 202 (336)
+++.+.....|.|.++.+++
T Consensus 22 ~~~l~agn~~G~iav~sl~s 41 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKS 41 (325)
T ss_pred ceEEEEecCCCeEEEEEehh
Confidence 44444444338898888854
No 87
>smart00284 OLF Olfactomedin-like domains.
Probab=35.56 E-value=3.1e+02 Score=24.16 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=47.8
Q ss_pred ccEEEeCCeEEEEeeCCCcEEEEEecCCce---eeecCCC-----Ccc---cceeeEEEeCCcEEEEEEEecC-cceEEE
Q 038767 176 KNMVRADGFLYCSFFSLDAIVAFNVASQNW---EILPYPP-----SIL---FMYKYLTEYDGSLLILAKVVNS-SGYRVF 243 (336)
Q Consensus 176 ~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~~---~~i~~p~-----p~~---~~~~~Lve~~G~LllV~~~~~~-~~~~V~ 243 (336)
..-|.+||.||+.-..+..|+.||+.++.- +.++.+. |.. ....-|..-+..|.++.....+ ..+.|=
T Consensus 77 tG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvS 156 (255)
T smart00284 77 TGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVIS 156 (255)
T ss_pred ccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEE
Confidence 456788999999765446899999998764 3343210 111 1223344445668887764333 568889
Q ss_pred EeecCCCc
Q 038767 244 TLNRSQMD 251 (336)
Q Consensus 244 ~ld~~~~~ 251 (336)
|||+++.+
T Consensus 157 kLnp~tL~ 164 (255)
T smart00284 157 KLNPATLT 164 (255)
T ss_pred eeCcccce
Confidence 99986544
No 88
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=35.34 E-value=2.8e+02 Score=23.62 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=40.6
Q ss_pred CCeEEEEeeCCCcEEEEEecCCceeeecCCC----CcccceeeEEEeCCcEEEEEEEecCc--c--eEEEEeecCCCceE
Q 038767 182 DGFLYCSFFSLDAIVAFNVASQNWEILPYPP----SILFMYKYLTEYDGSLLILAKVVNSS--G--YRVFTLNRSQMDWF 253 (336)
Q Consensus 182 ~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p~----p~~~~~~~Lve~~G~LllV~~~~~~~--~--~~V~~ld~~~~~W~ 253 (336)
+|.+|+.... .+..+|+.+.+++.+.... +.....--.++.+|.|++-....... . =+||+++.+ .+..
T Consensus 51 ~g~l~v~~~~--~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~ 127 (246)
T PF08450_consen 51 DGRLYVADSG--GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT 127 (246)
T ss_dssp TSEEEEEETT--CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE
T ss_pred CCEEEEEEcC--ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE
Confidence 7899887754 5677799888776554321 11111223456689988777642221 1 479999987 4433
Q ss_pred E
Q 038767 254 E 254 (336)
Q Consensus 254 ~ 254 (336)
.
T Consensus 128 ~ 128 (246)
T PF08450_consen 128 V 128 (246)
T ss_dssp E
T ss_pred E
Confidence 3
No 89
>PRK04043 tolB translocation protein TolB; Provisional
Probab=34.86 E-value=4e+02 Score=25.26 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=36.6
Q ss_pred CcEEEEEecCCceeeecCCCCcccceeeEEEeCCcEEEEEEEecCcceEEEEeecCCCceEEecccC
Q 038767 193 DAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTLNRSQMDWFEIECLD 259 (336)
Q Consensus 193 g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg 259 (336)
..|+++|+.+..-+.+... + +.....-..-+|+-+++... ....-+||.+|...+.+.++..-.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~-~-g~~~~~~~SPDG~~la~~~~-~~g~~~Iy~~dl~~g~~~~LT~~~ 276 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS-Q-GMLVVSDVSKDGSKLLLTMA-PKGQPDIYLYDTNTKTLTQITNYP 276 (419)
T ss_pred CEEEEEECCCCcEEEEecC-C-CcEEeeEECCCCCEEEEEEc-cCCCcEEEEEECCCCcEEEcccCC
Confidence 4799999987665555321 1 11111112336754444432 234578999998888888876544
No 90
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.62 E-value=3.5e+02 Score=23.83 Aligned_cols=128 Identities=12% Similarity=0.218 Sum_probs=64.2
Q ss_pred EEEEecCCCCeeeeeeeCCccc-cccEEE--eC-C-eEEEEeeCCCcEEEEEecCC-cee--eecCCCCcc-----cc--
Q 038767 153 ISICRPGDTTWTELRFQDNYRY-VKNMVR--AD-G-FLYCSFFSLDAIVAFNVASQ-NWE--ILPYPPSIL-----FM-- 217 (336)
Q Consensus 153 v~~~~~g~~~W~~~~~~~~~~~-~~d~v~--~~-G-~~Y~l~~~~g~i~~~Dl~~~-~~~--~i~~p~p~~-----~~-- 217 (336)
+.+|+.+.+.|+....-..+.. ..++.+ ++ | .|.|...+ |.|-+++..++ .|. .|....+.+ +.
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD-G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD-GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred EEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC-CcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 3889998889986432211121 333333 21 2 45555667 88888887765 443 222211111 10
Q ss_pred --eeeEEEeCCcEEEEEEEec---CcceEEEEeecCCCceEEecccCCeEEEeeC---------CceEEeecC-CC-eEE
Q 038767 218 --YKYLTEYDGSLLILAKVVN---SSGYRVFTLNRSQMDWFEIECLDDRALFMGA---------SCLWWVPVE-KG-CAF 281 (336)
Q Consensus 218 --~~~Lve~~G~LllV~~~~~---~~~~~V~~ld~~~~~W~~v~~Lg~~alFlg~---------~~s~~~~a~-~G-~IY 281 (336)
.--+++.+. .--|.+... +..++||+.|.. +|+.-..|.++.=|+-. ..+..+++. .| .|.
T Consensus 161 ~~~g~~~~~~~-~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 161 SAPGSLVDQGP-AAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred CCCccccccCc-ccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 012333211 111222211 257899988775 78777777766555432 222223333 56 777
Q ss_pred EEE
Q 038767 282 ANI 284 (336)
Q Consensus 282 f~~ 284 (336)
++.
T Consensus 238 wt~ 240 (299)
T KOG1332|consen 238 WTK 240 (299)
T ss_pred EEe
Confidence 776
No 91
>PLN02772 guanylate kinase
Probab=31.81 E-value=3e+02 Score=26.03 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=42.3
Q ss_pred cccEEEeCCeEEEEeeC-C-----CcEEEEEecCCceeeec--C--CCCcccceeeEEEeCCcEEEEEEEecCcceEEEE
Q 038767 175 VKNMVRADGFLYCSFFS-L-----DAIVAFNVASQNWEILP--Y--PPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFT 244 (336)
Q Consensus 175 ~~d~v~~~G~~Y~l~~~-~-----g~i~~~Dl~~~~~~~i~--~--p~p~~~~~~~Lve~~G~LllV~~~~~~~~~~V~~ 244 (336)
....+..++++|+.... . ..|++||..+.+|.... . |.|.. .+...+-.+++||++.. .....=.+|-
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~-GhSa~v~~~~rilv~~~-~~~~~~~~w~ 104 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK-GYSAVVLNKDRILVIKK-GSAPDDSIWF 104 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC-cceEEEECCceEEEEeC-CCCCccceEE
Confidence 34566788899988731 1 26899999999997533 2 33332 23334445788888876 3333334555
Q ss_pred e
Q 038767 245 L 245 (336)
Q Consensus 245 l 245 (336)
|
T Consensus 105 l 105 (398)
T PLN02772 105 L 105 (398)
T ss_pred E
Confidence 4
No 92
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=31.74 E-value=28 Score=30.72 Aligned_cols=32 Identities=22% Similarity=0.135 Sum_probs=26.1
Q ss_pred cCCCCCCcHHHHHHHHHcCC-cchhccccccch
Q 038767 14 RRSRSDLPLTIINLIVSRLY-VVYQIRFRAVCK 45 (336)
Q Consensus 14 ~~~Ws~LP~dll~~Il~rLp-~~dl~rfr~VCk 45 (336)
.....+||.+++.+|+.||| ..|++..+.|-.
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~e 231 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWE 231 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhH
Confidence 44578999999999999994 788888776643
No 93
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=31.69 E-value=82 Score=18.19 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=16.1
Q ss_pred CCeEEEEeeCCCcEEEEEecCC
Q 038767 182 DGFLYCSFFSLDAIVAFNVASQ 203 (336)
Q Consensus 182 ~G~~Y~l~~~~g~i~~~Dl~~~ 203 (336)
++.+|+.+...+.|.++|+.+.
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCC
Confidence 3568887765478999998654
No 94
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=31.21 E-value=3.2e+02 Score=23.04 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=37.5
Q ss_pred cEEEEEecCCceeeecCCCCcccceeeEEEeCCcEEEEEEEecC-cceEEEEeecCCCceEE
Q 038767 194 AIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNS-SGYRVFTLNRSQMDWFE 254 (336)
Q Consensus 194 ~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~-~~~~V~~ld~~~~~W~~ 254 (336)
.+.+|++.++.|+.+..+.+.......=|-.+|.|+-+.....+ ....|-.+|.++.+|.+
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~ 132 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKE 132 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEee
Confidence 56677888888998864323221111123458998888764221 22367778888888886
No 95
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=31.06 E-value=4.4e+02 Score=25.48 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=44.8
Q ss_pred cccEEEeCCeEEEEeeCCCcEEEEEecCCc-ee--eecCCCC-cccceeeEEE-eCCcEEEEEEEecC---cceEEEEee
Q 038767 175 VKNMVRADGFLYCSFFSLDAIVAFNVASQN-WE--ILPYPPS-ILFMYKYLTE-YDGSLLILAKVVNS---SGYRVFTLN 246 (336)
Q Consensus 175 ~~d~v~~~G~~Y~l~~~~g~i~~~Dl~~~~-~~--~i~~p~p-~~~~~~~Lve-~~G~LllV~~~~~~---~~~~V~~ld 246 (336)
..+++.++|++|++... |..+.+|+.+-. .. .+....+ .......-++ ..|+|+-+...... ..+.+|++|
T Consensus 123 Nt~v~~~~g~llAl~E~-g~p~~lDp~TLeT~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~ 201 (486)
T PF03055_consen 123 NTNVIPHGGRLLALWEG-GPPYELDPDTLETLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEID 201 (486)
T ss_dssp -SEEEEETTEEEEE-TT-SEEEEEETTTCEEEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-
T ss_pred eeeeEEECCEEEEEEcC-CCCEEechhHhhhcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEc
Confidence 45688899999999888 899999987632 11 1211111 1112222344 57999888885332 578899999
Q ss_pred cCC
Q 038767 247 RSQ 249 (336)
Q Consensus 247 ~~~ 249 (336)
.+.
T Consensus 202 ~~g 204 (486)
T PF03055_consen 202 PDG 204 (486)
T ss_dssp TTS
T ss_pred Ccc
Confidence 866
No 96
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=30.32 E-value=4.4e+02 Score=24.26 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=24.4
Q ss_pred EEEeCCeEEEEeeCCCcEEEEEecCCc--eee
Q 038767 178 MVRADGFLYCSFFSLDAIVAFNVASQN--WEI 207 (336)
Q Consensus 178 ~v~~~G~~Y~l~~~~g~i~~~Dl~~~~--~~~ 207 (336)
.++.+|++|+.... |.|.++|+.+.. |+.
T Consensus 64 ~~~~dg~v~~~~~~-G~i~A~d~~~g~~~W~~ 94 (370)
T COG1520 64 PADGDGTVYVGTRD-GNIFALNPDTGLVKWSY 94 (370)
T ss_pred cEeeCCeEEEecCC-CcEEEEeCCCCcEEecc
Confidence 48899999999888 999999998754 754
No 97
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=28.47 E-value=4.9e+02 Score=24.25 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=41.7
Q ss_pred CeeeeeeeCCccccccEEEeCCeEEEEeeCC---CcEEEEEecCCc---ee-eecCCCCcccceeeEEEeCCcEEEEEEE
Q 038767 162 TWTELRFQDNYRYVKNMVRADGFLYCSFFSL---DAIVAFNVASQN---WE-ILPYPPSILFMYKYLTEYDGSLLILAKV 234 (336)
Q Consensus 162 ~W~~~~~~~~~~~~~d~v~~~G~~Y~l~~~~---g~i~~~Dl~~~~---~~-~i~~p~p~~~~~~~Lve~~G~LllV~~~ 234 (336)
.|+.+..... .....+-..++.||+++... ++|+++++.... |. ++..+ .....-..+...++.|++..+.
T Consensus 268 ~~~~l~~~~~-~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 268 KPKLLSPRED-GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-DEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp SEEEEEESSS-S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEE
T ss_pred CcEEEeCCCC-ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC-CCceeEEEEEEECCEEEEEEEE
Confidence 6666543210 11334456789999998642 689999998653 55 44221 1111111222346677666663
Q ss_pred ecCcceEEEEee
Q 038767 235 VNSSGYRVFTLN 246 (336)
Q Consensus 235 ~~~~~~~V~~ld 246 (336)
.....+.|+.++
T Consensus 346 ~~~~~l~v~~~~ 357 (414)
T PF02897_consen 346 NGSSRLRVYDLD 357 (414)
T ss_dssp TTEEEEEEEETT
T ss_pred CCccEEEEEECC
Confidence 222455555444
No 98
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=28.31 E-value=3.4e+02 Score=24.38 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=34.3
Q ss_pred CCeEEEEeeCCCcEEEEEecCCceeeecCCCCcccceeeEEEeCCcEEEEEE
Q 038767 182 DGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAK 233 (336)
Q Consensus 182 ~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~ 233 (336)
.|.++.-+...+.++.||++...|.....|...--.+..-|+-.|++.+-..
T Consensus 243 ig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea 294 (353)
T COG4257 243 IGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA 294 (353)
T ss_pred cCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecc
Confidence 4677766655479999999998898876542110123445777888876443
No 99
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=26.78 E-value=2.9e+02 Score=24.34 Aligned_cols=68 Identities=21% Similarity=0.164 Sum_probs=38.4
Q ss_pred cccEEEe--CCeEEEEeeCCCcEEEEEecCCceeeecCCCCcccceeeEEEeCCcEEEEEEEecCcceEEEEe
Q 038767 175 VKNMVRA--DGFLYCSFFSLDAIVAFNVASQNWEILPYPPSILFMYKYLTEYDGSLLILAKVVNSSGYRVFTL 245 (336)
Q Consensus 175 ~~d~v~~--~G~~Y~l~~~~g~i~~~Dl~~~~~~~i~~p~p~~~~~~~Lve~~G~LllV~~~~~~~~~~V~~l 245 (336)
...++.+ ++.|..-+.. |+|.++|+..+.+.....|++.......-|..+|..+.... .....-||+|
T Consensus 127 Vn~vvlhpnQteLis~dqs-g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n--nkG~cyvW~l 196 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQS-GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN--NKGNCYVWRL 196 (311)
T ss_pred cceEEecCCcceEEeecCC-CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec--CCccEEEEEc
Confidence 4556654 5667776777 99999999988665443344332222233445555433322 2234456665
No 100
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=25.32 E-value=4e+02 Score=23.83 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=37.1
Q ss_pred EEecCC-CCeeeeeeeCC-ccc-cccEEEeCCeEEEEeeCCCcEEEEE---ecCCceeeecCCCCc-ccceeeEEEeCCc
Q 038767 155 ICRPGD-TTWTELRFQDN-YRY-VKNMVRADGFLYCSFFSLDAIVAFN---VASQNWEILPYPPSI-LFMYKYLTEYDGS 227 (336)
Q Consensus 155 ~~~~g~-~~W~~~~~~~~-~~~-~~d~v~~~G~~Y~l~~~~g~i~~~D---l~~~~~~~i~~p~p~-~~~~~~Lve~~G~ 227 (336)
++++.| ..|+....... ... --++.+++|++|+.... ..+.++- +.+..|..-...... ......+++-+|+
T Consensus 25 i~~S~DL~~W~~~g~~~~~~~~WAP~i~~~~g~~Y~~~~~-~~~~v~~s~~p~gp~w~~~~~~~~~~~IDp~vf~DdDGk 103 (295)
T cd08982 25 YWHSSDLIDWDFIPTNSLPDEGYAPAVFVYDGTLYYTAST-YNSRIYKTADPLSGPWEEVDKSFPPGLADPALFIDDDGR 103 (295)
T ss_pred eEECCCcCCceECCcccCCCCcCcCEEEEECCEEEEEEeC-CCceEEEeCCCCCCCccccccccCCCccCCceEECCCCC
Confidence 344444 35766543210 112 35678899999987654 2222221 111224432111011 1233455666688
Q ss_pred EEEEEE
Q 038767 228 LLILAK 233 (336)
Q Consensus 228 LllV~~ 233 (336)
.+|+..
T Consensus 104 ~Yl~~g 109 (295)
T cd08982 104 LYLYYG 109 (295)
T ss_pred EEEEEe
Confidence 888764
No 101
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=24.18 E-value=1.3e+02 Score=17.25 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=17.3
Q ss_pred EeCCeEEEEeeCCCcEEEEEecC
Q 038767 180 RADGFLYCSFFSLDAIVAFNVAS 202 (336)
Q Consensus 180 ~~~G~~Y~l~~~~g~i~~~Dl~~ 202 (336)
..++++|+.+...+.|.+.++++
T Consensus 18 ~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 18 WIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred ecCCEEEEEeCCCCEEEEEeCCC
Confidence 46788999987646788887765
No 102
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=23.76 E-value=98 Score=23.82 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=20.3
Q ss_pred cceEEEEeecCCCceEEecccCCeEEEe
Q 038767 238 SGYRVFTLNRSQMDWFEIECLDDRALFM 265 (336)
Q Consensus 238 ~~~~V~~ld~~~~~W~~v~~Lg~~alFl 265 (336)
....||++|.++.+|+|.+-=| +|||
T Consensus 27 ~~v~vY~f~~~~~~W~K~~iEG--~LFv 52 (122)
T PF06058_consen 27 SHVVVYKFDHETNEWEKTDIEG--TLFV 52 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEEEE--EEEE
T ss_pred CeEEEEeecCCCCcEeecCcEe--eEEE
Confidence 4578999999999999997433 5666
No 103
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=22.84 E-value=1.1e+02 Score=26.49 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=22.7
Q ss_pred EeCCeEEEEeeCCCcEEEEEecCCceeee
Q 038767 180 RADGFLYCSFFSLDAIVAFNVASQNWEIL 208 (336)
Q Consensus 180 ~~~G~~Y~l~~~~g~i~~~Dl~~~~~~~i 208 (336)
-.+|+||.++.. ++|+.+|+.+..-..+
T Consensus 36 pa~G~LYgl~~~-g~lYtIn~~tG~aT~v 63 (236)
T PF14339_consen 36 PANGQLYGLGST-GRLYTINPATGAATPV 63 (236)
T ss_pred cCCCCEEEEeCC-CcEEEEECCCCeEEEe
Confidence 368999999888 9999999988764444
No 104
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=22.21 E-value=6.4e+02 Score=23.41 Aligned_cols=106 Identities=11% Similarity=0.002 Sum_probs=54.5
Q ss_pred CCeEEEEeeCCCcEEEEEecCCc------eeeecCCCC-ccc--ceeeEEEe--CCcEEEEEEEecC------cceEEEE
Q 038767 182 DGFLYCSFFSLDAIVAFNVASQN------WEILPYPPS-ILF--MYKYLTEY--DGSLLILAKVVNS------SGYRVFT 244 (336)
Q Consensus 182 ~G~~Y~l~~~~g~i~~~Dl~~~~------~~~i~~p~p-~~~--~~~~Lve~--~G~LllV~~~~~~------~~~~V~~ 244 (336)
+|+.++++.. |.|.++|++++. |..+....+ .++ .....+.. +|+.+.|...... ..=+||.
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 7999999999 999999986542 555433211 111 11112322 4554444332111 1237888
Q ss_pred eecCCCceEEecccCCeEEEeeCCceEEeecCCC-eEEEEEeccCCcEEEe
Q 038767 245 LNRSQMDWFEIECLDDRALFMGASCLWWVPVEKG-CAFANIMHWFGPYSYI 294 (336)
Q Consensus 245 ld~~~~~W~~v~~Lg~~alFlg~~~s~~~~a~~G-~IYf~~~~~~~~~vy~ 294 (336)
+|.++.+=...-.+|.++. .+.++.-.. .+|-++....+..|+|
T Consensus 284 iD~~t~kvi~~i~vG~~~~------~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 284 VDAKTGKRLRKIELGHEID------SINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EECCCCeEEEEEeCCCcee------eEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 8876543332222333221 222222212 6776665556677888
No 105
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=21.92 E-value=5.8e+02 Score=22.82 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=64.3
Q ss_pred EEEEEecCCCCeeeeeeeCCccc-cccEEE-eCCeEEEEeeCCCcEEEEEecC-CceeeecCCCCcccceeeEEEeCC--
Q 038767 152 CISICRPGDTTWTELRFQDNYRY-VKNMVR-ADGFLYCSFFSLDAIVAFNVAS-QNWEILPYPPSILFMYKYLTEYDG-- 226 (336)
Q Consensus 152 ~v~~~~~g~~~W~~~~~~~~~~~-~~d~v~-~~G~~Y~l~~~~g~i~~~Dl~~-~~~~~i~~p~p~~~~~~~Lve~~G-- 226 (336)
++.+++.+++.|..+........ ...+++ .+|.+-+.......+.++.... +++..+....+.. .....|..++
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht-qDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT-QDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc-ccccEEEEcCCc
Confidence 45788888999988765432222 555666 4566665554424677777653 4566554433322 3334455555
Q ss_pred cEEEEEEEecCcceEEEEeecCCCceEEecccCCe
Q 038767 227 SLLILAKVVNSSGYRVFTLNRSQMDWFEIECLDDR 261 (336)
Q Consensus 227 ~LllV~~~~~~~~~~V~~ld~~~~~W~~v~~Lg~~ 261 (336)
+||.-.. ....+++|+-+. ...|+-+.+|+++
T Consensus 163 dlL~S~S--YDnTIk~~~~~~-dddW~c~~tl~g~ 194 (312)
T KOG0645|consen 163 DLLFSCS--YDNTIKVYRDED-DDDWECVQTLDGH 194 (312)
T ss_pred ceeEEec--cCCeEEEEeecC-CCCeeEEEEecCc
Confidence 4543333 346789998765 6689999888875
Done!