Query 038771
Match_columns 242
No_of_seqs 172 out of 904
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14368 LTP_2: Probable lipid 99.5 4.8E-15 1E-19 112.3 -0.3 75 27-110 19-96 (96)
2 cd04660 nsLTP_like nsLTP_like: 99.4 4.3E-13 9.2E-18 99.6 4.0 73 30-110 1-73 (73)
3 cd01960 nsLTP1 nsLTP1: Non-spe 99.3 1.1E-12 2.4E-17 100.1 3.5 72 29-106 2-79 (89)
4 cd00010 AAI_LTSS AAI_LTSS: Alp 99.3 1.1E-12 2.5E-17 93.4 3.2 62 38-103 1-63 (63)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.2 5.7E-12 1.2E-16 93.1 4.2 61 36-106 4-64 (66)
6 smart00499 AAI Plant lipid tra 98.8 4.5E-09 9.7E-14 75.2 4.4 75 30-110 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.2 4.7E-08 1E-12 73.7 -4.5 63 37-107 14-87 (90)
8 cd01958 HPS_like HPS_like: Hyd 93.8 0.048 1E-06 42.6 2.5 72 37-110 10-85 (85)
9 PF14547 Hydrophob_seed: Hydro 91.4 0.038 8.3E-07 43.1 -1.0 72 37-110 8-84 (85)
10 KOG1924 RhoA GTPase effector D 81.2 7.3 0.00016 41.7 8.4 24 96-119 520-545 (1102)
11 PF07172 GRP: Glycine rich pro 76.2 1.9 4.2E-05 34.1 2.1 17 1-18 1-17 (95)
12 KOG1924 RhoA GTPase effector D 32.3 2.2E+02 0.0048 31.1 8.4 9 152-160 547-555 (1102)
13 PF03032 Brevenin: Brevenin/es 24.2 41 0.0009 23.5 1.1 12 214-225 7-18 (46)
No 1
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.47 E-value=4.8e-15 Score=112.30 Aligned_cols=75 Identities=33% Similarity=0.758 Sum_probs=49.3
Q ss_pred CCCChhhhhcccccc---hhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcC
Q 038771 27 TTPCTTSMISSFTPC---LNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNM 103 (242)
Q Consensus 27 a~~C~~sV~s~LtPC---lpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv 103 (242)
..+|.. +|.+| +.|++++ ..|++.||+++|++++.+.+|||.++++....+++||.+++++||++||+
T Consensus 19 ~~~c~~----~l~~c~~~~~~~~~~-----~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~ 89 (96)
T PF14368_consen 19 CCSCAN----SLLPCCPCLCYVTGG-----PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGV 89 (96)
T ss_dssp TTB-HC----CCCHH--HHHHHCC----------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTS
T ss_pred cchhHH----HHhccccchhccCCC-----CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCC
Confidence 356654 67777 7888753 78999999999999888899999999876523457999999999999999
Q ss_pred CCCcCCC
Q 038771 104 GGVPVQC 110 (242)
Q Consensus 104 ~~pP~~C 110 (242)
+.++.+|
T Consensus 90 ~~~~~~C 96 (96)
T PF14368_consen 90 PVPPSKC 96 (96)
T ss_dssp S-S----
T ss_pred CCCCCCC
Confidence 9887665
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.37 E-value=4.3e-13 Score=99.65 Aligned_cols=73 Identities=27% Similarity=0.671 Sum_probs=58.2
Q ss_pred ChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcCCCCcCC
Q 038771 30 CTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGVPVQ 109 (242)
Q Consensus 30 C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv~~pP~~ 109 (242)
|..++ ..|++|++|+++++ ....|+..||++||++ +..|+|.+++... +. .||.++|.+||++||+++++.+
T Consensus 1 C~~~~-~~L~~C~~yl~~~~--~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~~-~~-~i~~~~a~~Lp~~Cgv~~p~~~ 72 (73)
T cd04660 1 CNMDL-DLLAECQPYVTGPN--PPPPPSRECCAALRRA---DLPCLCRYKTSLV-LQ-IIDPDKAVYLPAKCGLPLPPSS 72 (73)
T ss_pred CCCCH-HHHHHHHHHHcCCC--CCCCCCHHHHHHHHcC---CcCCEeeccCCCc-cc-ccCHHHHHHHHHHcCCCCCCCC
Confidence 45544 68999999999862 1136999999999984 4569999998654 44 5999999999999999988766
Q ss_pred C
Q 038771 110 C 110 (242)
Q Consensus 110 C 110 (242)
|
T Consensus 73 C 73 (73)
T cd04660 73 C 73 (73)
T ss_pred C
Confidence 5
No 3
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.31 E-value=1.1e-12 Score=100.11 Aligned_cols=72 Identities=26% Similarity=0.605 Sum_probs=55.0
Q ss_pred CChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCC-----CCceeeeeccCCCCCC-CCChHHHhhhcccCc
Q 038771 29 PCTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTS-----MDCACLVITANVPLQL-PINRTLSLSLPRACN 102 (242)
Q Consensus 29 ~C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a-----~~CLC~~~~a~~~~~~-~IN~trAl~LP~aCG 102 (242)
+|.. ++..|++|++|++++. ..|++.||++++++++.. ..|+|.-+.... .++ +||.++|++||++||
T Consensus 2 ~C~~-v~~~l~~C~~y~~g~~----~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~-~~~~~i~~~~a~~LP~~C~ 75 (89)
T cd01960 2 SCGQ-VTSLLAPCLGYLTGGG----PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAA-AGISGLNPGRAAGLPGKCG 75 (89)
T ss_pred CHHH-HHhhHHhHHHHHhCCC----CCCChHHhhhhHHHhhccCCCCchhhhhhcccccc-cccCCCCHHHHHhChHhcc
Confidence 5887 6779999999999863 689999999999998653 234444433322 233 399999999999999
Q ss_pred CCCC
Q 038771 103 MGGV 106 (242)
Q Consensus 103 v~~p 106 (242)
++.+
T Consensus 76 v~~~ 79 (89)
T cd01960 76 VSIP 79 (89)
T ss_pred cCCC
Confidence 9864
No 4
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.31 E-value=1.1e-12 Score=93.42 Aligned_cols=62 Identities=35% Similarity=0.831 Sum_probs=52.4
Q ss_pred cccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCC-ChHHHhhhcccCcC
Q 038771 38 FTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPI-NRTLSLSLPRACNM 103 (242)
Q Consensus 38 LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~I-N~trAl~LP~aCGv 103 (242)
|++|++|+++++ ..|+..||++++++++.+..|+|.++++......++ |.+++++||++||+
T Consensus 1 L~~C~~y~~~~~----~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGA----TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCC----CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 679999999862 689999999999999888899999998754322344 79999999999996
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.25 E-value=5.7e-12 Score=93.13 Aligned_cols=61 Identities=26% Similarity=0.558 Sum_probs=53.1
Q ss_pred cccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCCCChHHHhhhcccCcCCCC
Q 038771 36 SSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLPINRTLSLSLPRACNMGGV 106 (242)
Q Consensus 36 s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~IN~trAl~LP~aCGv~~p 106 (242)
.+|++|++|++++ ..||.+||+.||+ +..|||.+++++. +..+||.++|++|+++||+.++
T Consensus 4 ~~L~~C~~ai~~~-----~~Ps~~CC~~Lk~----~~~CLC~y~~~p~-l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGG-----SPPSAACCAKLKE----QQSCLCQYAKNPS-LKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCC-----CCCCHHHHHHHhc----CCCCeeeeecCcc-HHhhcCcHHHHHHHHHcCCCCC
Confidence 5899999999975 6899999999998 2489999998765 5557999999999999999875
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.82 E-value=4.5e-09 Score=75.16 Aligned_cols=75 Identities=36% Similarity=0.833 Sum_probs=56.4
Q ss_pred ChhhhhcccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCCCC----CChHHHhhhcccCcCCC
Q 038771 30 CTTSMISSFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQLP----INRTLSLSLPRACNMGG 105 (242)
Q Consensus 30 C~~sV~s~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~~~----IN~trAl~LP~aCGv~~ 105 (242)
|.. ++..+.+|+.|+++.. .. ..|+..||++|+.+. +..|+|.++.... ..+. +|..+|..||+.||+..
T Consensus 1 C~~-~~~~~~~c~~~~~~~~-~~-~~p~~~CC~~l~~~~--~~~C~C~~~~~~~-~~~~~~~~~~~~~a~~lp~~C~~~~ 74 (79)
T smart00499 1 CGQ-VLLQLAPCLSYLTGGS-PG-APPSQQCCSQLRGLN--SAQCRCLALRAAV-LGILEIPGVNAQNAASLPSACGVPP 74 (79)
T ss_pred Chh-hhhhHHhhHHHHcCCC-CC-CCCchHHHHHHHHhc--ccCCcchhhhccc-ccccchhhhhHHHHHhhHHhcCCCC
Confidence 444 3457779999999752 12 578999999999986 6789999998654 3222 69999999999999986
Q ss_pred CcCCC
Q 038771 106 VPVQC 110 (242)
Q Consensus 106 pP~~C 110 (242)
+...|
T Consensus 75 ~~~~C 79 (79)
T smart00499 75 PYTDC 79 (79)
T ss_pred CCCCC
Confidence 53333
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.19 E-value=4.7e-08 Score=73.73 Aligned_cols=63 Identities=32% Similarity=0.714 Sum_probs=51.6
Q ss_pred ccccchhhhhCCCCCCCCCccHHHHHHHHHhhcCCCCceeeeeccCCCCC-----------CCCChHHHhhhcccCcCCC
Q 038771 37 SFTPCLNFITGSTSNGVTTPTQNCCDSLKSLMSTSMDCACLVITANVPLQ-----------LPINRTLSLSLPRACNMGG 105 (242)
Q Consensus 37 ~LtPClpYLtg~s~ngt~sPSs~CC~aLksl~~~a~~CLC~~~~a~~~~~-----------~~IN~trAl~LP~aCGv~~ 105 (242)
.|.+|..|++++. ..|+..||++|+++ +..|.|..+.... .+ ..++..+|..||+.||+..
T Consensus 14 ~l~~c~~~~~~~~----~~~~~~CC~~L~~l---~~~C~C~~i~~~~-~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~ 85 (90)
T PF00234_consen 14 RLSPCLPYLQGGC----QQPSQQCCQQLRQL---DPQCRCEAIRQMV-RQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSP 85 (90)
T ss_dssp HHHGGHHHHTTSS----SHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred cccccHHHHhccc----ccchHHHhHHHHHH---hHHhhCHHHHHHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCC
Confidence 5889999999863 57999999999998 4579999987533 22 2589999999999999987
Q ss_pred Cc
Q 038771 106 VP 107 (242)
Q Consensus 106 pP 107 (242)
+.
T Consensus 86 ~~ 87 (90)
T PF00234_consen 86 PY 87 (90)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 8
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=93.82 E-value=0.048 Score=42.63 Aligned_cols=72 Identities=32% Similarity=0.550 Sum_probs=49.8
Q ss_pred ccccchhhhhCCCC-CCCCCccHHHHHHHHHhhcCC-CCceeeeeccCCCCCCCCChHHHhhhc-ccCcCCCCcC-CC
Q 038771 37 SFTPCLNFITGSTS-NGVTTPTQNCCDSLKSLMSTS-MDCACLVITANVPLQLPINRTLSLSLP-RACNMGGVPV-QC 110 (242)
Q Consensus 37 ~LtPClpYLtg~s~-ngt~sPSs~CC~aLksl~~~a-~~CLC~~~~a~~~~~~~IN~trAl~LP-~aCGv~~pP~-~C 110 (242)
+|--|.+-+..-.. .+ ..+...||.-++.+.+.+ ..|+|..++.+. +++.+|....+++- ..||-..|.. +|
T Consensus 10 kLgvCanvL~l~~~~~g-~~~~~~CC~ll~GL~dldAA~CLCtaikan~-lgi~~~~pv~l~llln~CGk~~P~gf~C 85 (85)
T cd01958 10 KLGVCANVLGLSLLLLG-TPAVQPCCPLIGGLADLDAAVCLCTAIKANI-LGISINIPVALSLLLNSCGRNVPPGFTC 85 (85)
T ss_pred HhchhHhhhhccccccC-CCccchHHHHHcCchhhheeeeeeeeeeccc-cCcccccChhHHHHHHHHcCcCCCCCcC
Confidence 56677776632110 12 457799999999997665 459999999876 66666666666655 4699887654 55
No 9
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=91.40 E-value=0.038 Score=43.05 Aligned_cols=72 Identities=29% Similarity=0.521 Sum_probs=47.8
Q ss_pred ccccchhhhhCCC-CCCCCCccHHHHHHHHHhhcCC-CCceeeeeccCCCCC-CCCChHHHh-hhcccCcCCCCcC-CC
Q 038771 37 SFTPCLNFITGST-SNGVTTPTQNCCDSLKSLMSTS-MDCACLVITANVPLQ-LPINRTLSL-SLPRACNMGGVPV-QC 110 (242)
Q Consensus 37 ~LtPClpYLtg~s-~ngt~sPSs~CC~aLksl~~~a-~~CLC~~~~a~~~~~-~~IN~trAl-~LP~aCGv~~pP~-~C 110 (242)
+|.-|.+.+.-.. .-+ ..+...||.-++.+.+.+ ..|||..++.+. ++ +.||....+ .|-..||...|.. +|
T Consensus 8 kLgvC~~vL~l~~~~~g-~~~~~~CC~li~gL~d~~AA~CLC~aika~v-lg~i~~~ipv~l~~lln~CGk~~p~gf~C 84 (85)
T PF14547_consen 8 KLGVCANVLGLVNLVIG-NPPRQPCCSLIAGLADLDAAVCLCTAIKANV-LGLINVNIPVALNLLLNACGKTVPSGFTC 84 (85)
T ss_pred hhhhhhhhhhhhccccC-CCCCCCcChHHhCcccchHHHHHHHHHhhhc-ccccccccccHHHHHHHHhCCcCcCCCcC
Confidence 6778888771110 011 346889999999997655 459999998776 55 444444443 4557799887654 76
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=81.23 E-value=7.3 Score=41.67 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=14.5
Q ss_pred hhcccCcCCCCcC--CCCCCCCCCCC
Q 038771 96 SLPRACNMGGVPV--QCKASGTPLPA 119 (242)
Q Consensus 96 ~LP~aCGv~~pP~--~C~~~~ap~Pa 119 (242)
-+|..||+..||. -=++.+.|.|+
T Consensus 520 ~~~~~~~iP~PP~~pp~gG~g~pppP 545 (1102)
T KOG1924|consen 520 LLPIDGGIPPPPPLPPTGGTGPPPPP 545 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 5677888887765 22454444443
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.22 E-value=1.9 Score=34.07 Aligned_cols=17 Identities=53% Similarity=0.677 Sum_probs=10.1
Q ss_pred CCchhhHHHHHHHHHHHH
Q 038771 1 MEGLKTFHLFALLLATLS 18 (242)
Q Consensus 1 Ma~~k~~~~vv~lLa~ll 18 (242)
|+ +|.|.++.++||++|
T Consensus 1 Ma-SK~~llL~l~LA~lL 17 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALL 17 (95)
T ss_pred Cc-hhHHHHHHHHHHHHH
Confidence 88 555555656666544
No 12
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=32.35 E-value=2.2e+02 Score=31.11 Aligned_cols=9 Identities=33% Similarity=0.442 Sum_probs=3.5
Q ss_pred CCCCCCCCC
Q 038771 152 DSPLSPRAS 160 (242)
Q Consensus 152 ~~~~~~~~~ 160 (242)
++|++-.+.
T Consensus 547 pPPlpggag 555 (1102)
T KOG1924|consen 547 PPPLPGGAG 555 (1102)
T ss_pred CCCCCCCCC
Confidence 333443433
No 13
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=24.23 E-value=41 Score=23.48 Aligned_cols=12 Identities=50% Similarity=0.863 Sum_probs=9.9
Q ss_pred hHHHHHHHHhhh
Q 038771 214 SLLLFFVGIRRF 225 (242)
Q Consensus 214 ~~~~~~~~~~~~ 225 (242)
.++|||+|++-|
T Consensus 7 llLlfflG~ISl 18 (46)
T PF03032_consen 7 LLLLFFLGTISL 18 (46)
T ss_pred HHHHHHHHHccc
Confidence 578889999866
Done!