BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038775
         (630 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
           4-(4-Chlorophenyl) Imidazole
 pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
           4-(4-Chlorophenyl) Imidazole
 pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
           4-(4-Chlorophenyl) Imidazole
 pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
           4-(4-Chlorophenyl) Imidazole
          Length = 476

 Score = 32.7 bits (73), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 467 NHCNPKHSVTVKERAELNKIRMRLGVQHTINHQTCAERSIRTSELILELKKIFENLGIKC 526
           N  NP H +      + N+  M      ++  + CA   I  +EL L    I +N  I  
Sbjct: 387 NTFNPGHFLDANGALKRNEGFMPF----SLGKRICAGEGIARTELFLFFTTILQNFSIAS 442

Query: 527 HLPPQEIHIT 536
            +PP++I +T
Sbjct: 443 PVPPEDIDLT 452


>pdb|2Z7E|A Chain A, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
           [2fe- 2s] Cluster
 pdb|2Z7E|B Chain B, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
           [2fe- 2s] Cluster
 pdb|2Z7E|C Chain C, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
           [2fe- 2s] Cluster
          Length = 157

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 511 LILELKKIFENLGIKCHLPPQEIHITQLNLNNW--TMPSHSLRQG 553
           L L  K IFE LG    LPPQ+IH T L L      +  + ++QG
Sbjct: 86  LNLTYKDIFEELG---GLPPQKIHCTNLGLETLHVAIKDYLMKQG 127


>pdb|2II2|A Chain A, Crystal Structure Of Alpha-11 Giardin
 pdb|2IIC|A Chain A, Calcium Bound Structure Of Alpha-11 Giardin
 pdb|2IIC|B Chain B, Calcium Bound Structure Of Alpha-11 Giardin
 pdb|2IIC|C Chain C, Calcium Bound Structure Of Alpha-11 Giardin
 pdb|2IIC|D Chain D, Calcium Bound Structure Of Alpha-11 Giardin
          Length = 310

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 10/72 (13%)

Query: 131 SKQRKEIGSPIGD--------FLRNCIRNCMWLGLVLRAWTCIFNEKLHKKNKMLEKV-- 180
           +++RKE+ +   D        FL+ CI+N  +  ++   W C  + +++   K ++ V  
Sbjct: 34  AEERKELRTQFQDTTGLEFIAFLKKCIKNGPYEDVMALGWDCNISARVNVIKKAMKNVND 93

Query: 181 FRALVAVSLGAT 192
           FRA+  V L AT
Sbjct: 94  FRAIHDVVLIAT 105


>pdb|4B21|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
           Glycosylase Homolog Mag2
 pdb|4B22|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
           Glycosylase Homolog Mag2
 pdb|4B23|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
           Glycoslase Homolog Mag2
 pdb|4B24|A Chain A, Unprecedented Sculpting Of Dna At Abasic Sites By Dna
           Glycoslase Homolog Mag2
          Length = 232

 Score = 29.3 bits (64), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 47  PDLHQIPATRKQTLHRLSFSKPKSRLLELNYPLTAHNKTIPESNEIE 93
           P   QI  T  +TLH   FSK KS+ + +     A NK IP  +EIE
Sbjct: 96  PTPKQIMETDVETLHECGFSKLKSQEIHI-VAEAALNKQIPSKSEIE 141


>pdb|4HSB|A Chain A, S. Pombe 3-methyladenine Dna Glycosylase-like Protein Mag2
           Bound To Damaged Dna
          Length = 217

 Score = 29.3 bits (64), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 47  PDLHQIPATRKQTLHRLSFSKPKSRLLELNYPLTAHNKTIPESNEIE 93
           P   QI  T  +TLH   FSK KS+ + +     A NK IP  +EIE
Sbjct: 81  PTPKQIMETDVETLHECGFSKLKSQEIHI-VAEAALNKQIPSKSEIE 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,103,234
Number of Sequences: 62578
Number of extensions: 560921
Number of successful extensions: 1028
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1024
Number of HSP's gapped (non-prelim): 8
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)