BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038776
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 92/195 (47%), Gaps = 3/195 (1%)
Query: 73 RHQRVTILDLQNLKLAGTLPPHIGNLSF-LQKLDLRNNSFTNEIPPQIGHLRR--LQILY 129
+ + + +LDL + +G LP + NLS L LDL +N+F+ I P + + LQ LY
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 130 LQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPX 189
LQ N F G+IP ++SNCS L+ + L+ N+L+G IPS GSLSKL+ L N L G IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFD 249
G IP G IP I + ++
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 250 VGSNYIEGEMPLDLG 264
+ +N G +P +LG
Sbjct: 521 LSNNSFSGNIPAELG 535
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%)
Query: 87 LAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNC 146
L+GT+P +G+LS L+ L L N EIP ++ +++ L+ L L N GEIP+ +SNC
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 147 SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPXXXXXXXXXXXXXXXXXX 206
+NL +SL+ N L G+IP G L L L + N+ +GNIP
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 207 FYGSIP 212
F G+IP
Sbjct: 550 FNGTIP 555
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 4/189 (2%)
Query: 70 CSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILY 129
C + L LQN G +PP + N S L L L N + IP +G L +L+ L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 130 LQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPX 189
L +N +GEIP + L + L N L G+IPS + + L ++S + N LTG IP
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFD 249
F G+IP G + GTIP +F Q+
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGK 564
Query: 250 VGSNYIEGE 258
+ +N+I G+
Sbjct: 565 IAANFIAGK 573
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 38 LLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSP---RHQRVTILDLQNLKLAGTLPPH 94
LLEF+ I ++ L L + N YG SP + + LD+ L+G +P
Sbjct: 593 LLEFQG-IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154
IG++ +L L+L +N + IP ++G LR L IL L N DG IP ++S + L + L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 155 ALNHLAGKIPS--EFGSLSKLQFLS 177
+ N+L+G IP +F + +FL+
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 5/209 (2%)
Query: 77 VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP-PQIGHLRRLQILYLQINSF 135
+T LDL G +PP G+ S L+ L L +N+F+ E+P + +R L++L L N F
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 136 DGEIPASISNCS-NLLVVSLALNHLAGKIPSEFGSLSK--LQFLSTTANNLTGNIPXXXX 192
GE+P S++N S +LL + L+ N+ +G I K LQ L N TG IP
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 193 XXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFDVGS 252
G+IP + G L G IP + + +++T +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 253 NYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
N + GE+P L + NL S++ N+ T
Sbjct: 476 NDLTGEIPSGL-SNCTNLNWISLSNNRLT 503
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 84/227 (37%), Gaps = 46/227 (20%)
Query: 80 LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI 139
+ L N +L G +P IG L L L L NNSF+ IP ++G R L L L N F+G I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 140 PASI--------------------------SNC---SNLL----VVSLALNHLAGKIPSE 166
PA++ C NLL + S LN L+ + P
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 167 -------------FGSLSKLQFLSTTANNLTGNIPXXXXXXXXXXXXXXXXXXFYGSIPD 213
F + + FL + N L+G IP GSIPD
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 214 TFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFDVGSNYIEGEMP 260
G L+ G IP + ++ + D+ +N + G +P
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 89/221 (40%), Gaps = 32/221 (14%)
Query: 80 LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI 139
LD+ KL+G I + L+ L++ +N F IPP L+ LQ L L N F GEI
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 140 PASISN-CSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPXXXXXXXXXX 198
P +S C L + L+ NH G +P FGS S L+ L+ ++NN +G +P
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 199 XXXXXX-XXFYGSIPDTFGGLKXXXXXXXXXXXX-------------------------- 231
F G +P++ L
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 232 -XGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLR 271
G IPP + N S + + + NY+ G +P LG +L LR
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLR 445
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 18/222 (8%)
Query: 67 GVTCSPRHQRVTILDLQNLKLAG--TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG---H 121
G CS +T LDL L+G T +G+ S L+ L++ +N+ + P ++
Sbjct: 95 GFKCS---ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLK 149
Query: 122 LRRLQILYLQINSFDGE--IPASISN-CSNLLVVSLALNHLAGKIPSEFGSLSKLQFLST 178
L L++L L NS G + +S+ C L ++++ N ++G + + L+FL
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDV 207
Query: 179 TANNLTGNIPXXXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPL 238
++NN + IP G G IPPL
Sbjct: 208 SSNNFSTGIPFLGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 239 IFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280
+ S+Q + N GE+P L L ++GN F
Sbjct: 267 P--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 92/195 (47%), Gaps = 3/195 (1%)
Query: 73 RHQRVTILDLQNLKLAGTLPPHIGNLSF-LQKLDLRNNSFTNEIPPQIGHLRR--LQILY 129
+ + + +LDL + +G LP + NLS L LDL +N+F+ I P + + LQ LY
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 130 LQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPX 189
LQ N F G+IP ++SNCS L+ + L+ N+L+G IPS GSLSKL+ L N L G IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFD 249
G IP G IP I + ++
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 250 VGSNYIEGEMPLDLG 264
+ +N G +P +LG
Sbjct: 518 LSNNSFSGNIPAELG 532
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 68/126 (53%)
Query: 87 LAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNC 146
L+GT+P +G+LS L+ L L N EIP ++ +++ L+ L L N GEIP+ +SNC
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 147 SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPXXXXXXXXXXXXXXXXXX 206
+NL +SL+ N L G+IP G L L L + N+ +GNIP
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 207 FYGSIP 212
F G+IP
Sbjct: 547 FNGTIP 552
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 4/189 (2%)
Query: 70 CSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILY 129
C + L LQN G +PP + N S L L L N + IP +G L +L+ L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 130 LQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPX 189
L +N +GEIP + L + L N L G+IPS + + L ++S + N LTG IP
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 190 XXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFD 249
F G+IP G + GTIP +F Q+
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGK 561
Query: 250 VGSNYIEGE 258
+ +N+I G+
Sbjct: 562 IAANFIAGK 570
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 5/209 (2%)
Query: 77 VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP-PQIGHLRRLQILYLQINSF 135
+T LDL G +PP G+ S L+ L L +N+F+ E+P + +R L++L L N F
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 136 DGEIPASISNCS-NLLVVSLALNHLAGKIPSEFGSLSK--LQFLSTTANNLTGNIPXXXX 192
GE+P S++N S +LL + L+ N+ +G I K LQ L N TG IP
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 193 XXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFDVGS 252
G+IP + G L G IP + + +++T +
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 253 NYIEGEMPLDLGTTLPNLRIFSITGNQFT 281
N + GE+P L + NL S++ N+ T
Sbjct: 473 NDLTGEIPSGL-SNCTNLNWISLSNNRLT 500
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 38 LLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSP---RHQRVTILDLQNLKLAGTLPPH 94
LLEF+ I ++ L L + N YG SP + + LD+ L+G +P
Sbjct: 590 LLEFQG-IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154
IG++ +L L+L +N + IP ++G LR L IL L N DG IP ++S + L + L
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 155 ALNHLAGKIPS--EFGSLSKLQFLS 177
+ N+L+G IP +F + +FL+
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLN 733
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 84/227 (37%), Gaps = 46/227 (20%)
Query: 80 LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI 139
+ L N +L G +P IG L L L L NNSF+ IP ++G R L L L N F+G I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 140 PASI--------------------------SNC---SNLL----VVSLALNHLAGKIPSE 166
PA++ C NLL + S LN L+ + P
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 167 -------------FGSLSKLQFLSTTANNLTGNIPXXXXXXXXXXXXXXXXXXFYGSIPD 213
F + + FL + N L+G IP GSIPD
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 214 TFGGLKXXXXXXXXXXXXXGTIPPLIFNISSIQTFDVGSNYIEGEMP 260
G L+ G IP + ++ + D+ +N + G +P
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 89/221 (40%), Gaps = 32/221 (14%)
Query: 80 LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI 139
LD+ KL+G I + L+ L++ +N F IPP L+ LQ L L N F GEI
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 140 PASISN-CSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPXXXXXXXXXX 198
P +S C L + L+ NH G +P FGS S L+ L+ ++NN +G +P
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 199 XXXXXX-XXFYGSIPDTFGGLKXXXXXXXXXXXX-------------------------- 231
F G +P++ L
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 232 -XGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLR 271
G IPP + N S + + + NY+ G +P LG +L LR
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLR 442
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 18/222 (8%)
Query: 67 GVTCSPRHQRVTILDLQNLKLAG--TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG---H 121
G CS +T LDL L+G T +G+ S L+ L++ +N+ + P ++
Sbjct: 92 GFKCS---ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLK 146
Query: 122 LRRLQILYLQINSFDGE--IPASISN-CSNLLVVSLALNHLAGKIPSEFGSLSKLQFLST 178
L L++L L NS G + +S+ C L ++++ N ++G + + L+FL
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDV 204
Query: 179 TANNLTGNIPXXXXXXXXXXXXXXXXXXFYGSIPDTFGGLKXXXXXXXXXXXXXGTIPPL 238
++NN + IP G G IPPL
Sbjct: 205 SSNNFSTGIPFLGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPL 263
Query: 239 IFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280
+ S+Q + N GE+P L L ++GN F
Sbjct: 264 P--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 31 NETDRAALLEFKSKITNDALGVLGSWNDSIHFCE--WYGVTCSPRHQ--RVTILDLQNLK 86
N D+ ALL+ K + N L SW + C W GV C Q RV LDL L
Sbjct: 4 NPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 87 L---------------------------AGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQI 119
L G +PP I L+ L L + + + + IP +
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 120 GHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKL-QFLST 178
++ L L N+ G +P SIS+ NL+ ++ N ++G IP +GS SKL ++
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 179 TANNLTGNIP 188
+ N LTG IP
Sbjct: 182 SRNRLTGKIP 191
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 80 LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQI 127
LDL+N ++ GTLP + L FL L++ N+ EI PQ G+L+R +
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDV 295
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 86 KLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISN 145
+L G +PP NL+ L +DL N + G + Q ++L NS ++ +
Sbjct: 185 RLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGL 242
Query: 146 CSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIP 188
NL + L N + G +P L L L+ + NNL G IP
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 80 LDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI 139
LDL NL++ + +I FL +L L NS T E+P +I +L L++L L N +
Sbjct: 229 LDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 140 PASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNL 183
PA + +C L +++ +P EFG+L LQFL N L
Sbjct: 286 PAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 94 HIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153
H +LS LQ ++ N F + L LYL NS E+PA I N SNL V+
Sbjct: 227 HALDLSNLQIFNISANIFKYDF---------LTRLYLNGNSL-TELPAEIKNLSNLRVLD 276
Query: 154 LALNHLAGKIPSEFGSLSKLQFL 176
L+ N L +P+E GS +L++
Sbjct: 277 LSHNRLTS-LPAELGSCFQLKYF 298
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 24/103 (23%)
Query: 64 EWYGVTCSPRHQRVTILDLQNLK-------LAGTLPPHIGNLSFLQKLDLRNNSFTNEIP 116
EW G+ P +I +LQNLK L P I +L L++LDLR + P
Sbjct: 191 EWTGIRSLP----ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246
Query: 117 PQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHL 159
P G L+ L L+ +CSNLL + L ++ L
Sbjct: 247 PIFGGRAPLKRLILK-------------DCSNLLTLPLDIHRL 276
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 78 TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG 137
T+++ QN++LA ++P I + Q+L L NN T P HL LQ LY N
Sbjct: 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 138 EIPASI-SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL 176
IP + + L + L NHL F +L L +
Sbjct: 72 -IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 95 IGNLSFLQKLDLRNNSF--TNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVV 152
+ L LQKLDL ++ ++ Q+ +LR LQ L L N G + C L ++
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 153 SLALNHLAGKIP-SEFGSLSKLQFLS 177
+A HL K P S F +L L+ L+
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLN 430
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 80 LDLQNLKLAGTLPPHI---GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
++++N ++GT H+ +S LD NN T+ + GHL L+ L LQ+N
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 32/148 (21%)
Query: 62 FCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGH 121
C+ G CS + + ++ D + KL +P +I + +KLDL++N ++ +P + H
Sbjct: 4 LCKKDGGVCSCNNNKNSV-DCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSS-LPSKAFH 58
Query: 122 -LRRLQILYLQINSFDGEIPASI-------------------------SNCSNLLVVSLA 155
L +L++LYL N +PA I NL + L
Sbjct: 59 RLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 156 LNHLAGKIPSEFGSLSKLQFLSTTANNL 183
N L P F SL+KL +LS N L
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 21/94 (22%)
Query: 101 LQKLDLRNNSFTNEIPPQIGH--LR---RLQILYLQ---INSFDGEIPASISNCSNLLVV 152
++ LDL N T IGH LR LQ+L L+ IN+ +G+ S+ + +L
Sbjct: 54 MKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL--- 105
Query: 153 SLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN 186
L+ NHL+ S FG LS L++L NL GN
Sbjct: 106 DLSDNHLSSLSSSWFGPLSSLKYL-----NLMGN 134
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 122 LRRLQILYLQINSF-DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180
L L++L + NSF + +P + NL + L+ L P+ F SLS LQ L+ +
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 181 NN 182
NN
Sbjct: 528 NN 529
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 82 LQNLKLAGT------LPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSF 135
L+ LK+AG LP L L LDL P L LQ+L + N+F
Sbjct: 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 136 DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSL-SKLQFLSTTANN 182
++L V+ +LNH+ E S L FL+ T N+
Sbjct: 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 21/94 (22%)
Query: 101 LQKLDLRNNSFTNEIPPQIGH--LR---RLQILYLQ---INSFDGEIPASISNCSNLLVV 152
++ LDL N T IGH LR LQ+L L+ IN+ +G+ S+ + +L
Sbjct: 28 MKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL--- 79
Query: 153 SLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN 186
L+ NHL+ S FG LS L++L NL GN
Sbjct: 80 DLSDNHLSSLSSSWFGPLSSLKYL-----NLMGN 108
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 5/123 (4%)
Query: 63 CEWYGVTCSPRH--QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG 120
C G+ P+ T+LDLQN ++ L L L L NN +
Sbjct: 40 CSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS 99
Query: 121 HLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180
LR+LQ LY+ N EIP ++ S+L+ + + N + F L + +
Sbjct: 100 PLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156
Query: 181 NNL 183
N L
Sbjct: 157 NPL 159
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 122 LRRLQILYLQINSF-DGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180
L L++L + NSF + +P + NL + L+ L P+ F SLS LQ L+ +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 181 NN 182
NN
Sbjct: 504 NN 505
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 122 LRRLQILYLQINSFDGE-IPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180
L L++L + NSF +P + NL + L+ L P+ F SLS LQ L+ +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 181 NN 182
NN
Sbjct: 209 NN 210
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 63 CEWYGVTCSPRH--QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG 120
C G+ P+ +LDLQN K+ NL L L L NN + P
Sbjct: 38 CSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97
Query: 121 HLRRLQILYLQINSFDGEIPASI 143
L +L+ LYL N E+P +
Sbjct: 98 PLVKLERLYLSKNQLK-ELPEKM 119
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 63 CEWYGVTCSPRH--QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG 120
C G+ P+ +LDLQN K+ NL L L L NN + P
Sbjct: 38 CSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97
Query: 121 HLRRLQILYLQINSFDGEIPASI 143
L +L+ LYL N E+P +
Sbjct: 98 PLVKLERLYLSKNQLK-ELPEKM 119
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 81 DLQNLKLAGT----LPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136
D+ L L G +P + N L +DL NN + ++ +L L L N
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 137 GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNL 183
P + +L ++SL N ++ F LS L L+ AN L
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 92 PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG--EIPASISNCSNL 149
PP + +FL + N FT+ + L+RLQ L LQ N ++ N S+L
Sbjct: 349 PPSPSSFTFL---NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405
Query: 150 LVVSLALNHLAGKIPSEFGSLSK-LQFLSTTANNLTGNI 187
+ ++LN L + ++ + L+ ++N LTG++
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 101 LQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLA 160
++ LDL NN T + LQ L L N + S S+ +L + L+ N+L+
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 161 GKIPSEFGSLSKLQFLSTTANNLTGN 186
S F LS L FL NL GN
Sbjct: 114 NLSSSWFKPLSSLTFL-----NLLGN 134
>pdb|1K8F|A Chain A, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|B Chain B, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|C Chain C, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
pdb|1K8F|D Chain D, Crystal Structure Of The Human C-Terminal Cap1-Adenylyl
Cyclase Associated Protein
Length = 157
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 129 YLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG 185
YL NS D EI ++ S+ N+L+ + + +P +F +L Q L TT + G
Sbjct: 101 YLSKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,220,356
Number of Sequences: 62578
Number of extensions: 255605
Number of successful extensions: 609
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 133
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)