Query 038776
Match_columns 281
No_of_seqs 244 out of 3699
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.7E-33 8E-38 269.7 22.3 245 31-280 27-296 (968)
2 PLN00113 leucine-rich repeat r 99.9 3E-27 6.5E-32 228.7 15.3 205 75-280 140-344 (968)
3 KOG4194 Membrane glycoprotein 99.9 1E-22 2.2E-27 175.9 2.1 85 75-159 173-257 (873)
4 KOG4194 Membrane glycoprotein 99.8 4.8E-22 1E-26 171.7 2.3 205 75-280 125-353 (873)
5 KOG0617 Ras suppressor protein 99.8 3.2E-23 6.8E-28 153.5 -4.6 165 95-265 29-194 (264)
6 KOG0444 Cytoskeletal regulator 99.8 3.4E-22 7.4E-27 174.2 -2.9 200 75-281 78-304 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 3.7E-22 8.1E-27 174.0 -4.0 200 75-280 126-351 (1255)
8 KOG0617 Ras suppressor protein 99.8 9.7E-22 2.1E-26 145.6 -4.1 156 120-281 30-186 (264)
9 KOG0472 Leucine-rich repeat pr 99.8 4.7E-22 1E-26 164.9 -9.4 198 75-281 68-288 (565)
10 KOG0472 Leucine-rich repeat pr 99.7 3.7E-21 8E-26 159.6 -9.5 196 77-281 47-265 (565)
11 KOG4237 Extracellular matrix p 99.7 2.9E-19 6.2E-24 148.1 -1.6 123 61-184 51-177 (498)
12 PLN03210 Resistant to P. syrin 99.7 3.4E-16 7.3E-21 153.3 16.8 103 75-180 611-713 (1153)
13 PRK15370 E3 ubiquitin-protein 99.7 9.6E-17 2.1E-21 148.6 12.2 180 76-280 200-379 (754)
14 cd00116 LRR_RI Leucine-rich re 99.7 3.7E-18 8E-23 145.4 1.6 206 75-280 81-319 (319)
15 PLN03210 Resistant to P. syrin 99.7 6.6E-16 1.4E-20 151.3 16.4 194 75-277 634-878 (1153)
16 cd00116 LRR_RI Leucine-rich re 99.7 4.6E-18 9.9E-23 144.8 0.9 206 75-281 51-291 (319)
17 PRK15387 E3 ubiquitin-protein 99.7 4.6E-16 1E-20 143.6 13.0 76 196-281 383-458 (788)
18 PRK15370 E3 ubiquitin-protein 99.7 5.9E-16 1.3E-20 143.4 12.7 182 75-281 178-359 (754)
19 KOG0618 Serine/threonine phosp 99.7 3.8E-18 8.3E-23 154.5 -3.3 197 75-279 241-487 (1081)
20 KOG0618 Serine/threonine phosp 99.6 1.3E-17 2.7E-22 151.2 -4.6 189 83-278 295-510 (1081)
21 PLN03150 hypothetical protein; 99.6 7.1E-15 1.5E-19 135.2 13.0 151 29-184 368-528 (623)
22 KOG4237 Extracellular matrix p 99.6 2.8E-17 6.1E-22 136.4 -4.7 204 75-280 91-358 (498)
23 PRK15387 E3 ubiquitin-protein 99.6 3.6E-14 7.8E-19 131.3 15.0 53 76-136 223-275 (788)
24 KOG0532 Leucine-rich repeat (L 99.6 5.9E-17 1.3E-21 140.1 -5.1 178 78-265 78-255 (722)
25 KOG0532 Leucine-rich repeat (L 99.5 2.7E-16 5.9E-21 136.0 -3.6 175 97-281 73-247 (722)
26 COG4886 Leucine-rich repeat (L 99.5 5.6E-14 1.2E-18 123.3 5.9 177 95-280 112-289 (394)
27 COG4886 Leucine-rich repeat (L 99.4 4.5E-13 9.8E-18 117.6 6.5 179 75-261 116-295 (394)
28 PLN03150 hypothetical protein; 99.4 1.7E-12 3.8E-17 119.5 8.5 107 173-279 420-526 (623)
29 KOG4658 Apoptotic ATPase [Sign 99.2 1.9E-12 4.1E-17 122.2 1.9 189 13-202 479-675 (889)
30 KOG3207 Beta-tubulin folding c 99.2 2.9E-12 6.3E-17 108.1 0.3 204 75-281 121-339 (505)
31 PF14580 LRR_9: Leucine-rich r 99.2 3.1E-11 6.7E-16 92.6 5.1 107 121-232 17-126 (175)
32 KOG3207 Beta-tubulin folding c 99.2 2.7E-12 5.9E-17 108.3 -1.2 183 96-280 118-313 (505)
33 KOG1909 Ran GTPase-activating 99.1 1.1E-11 2.3E-16 102.0 0.4 185 95-280 88-310 (382)
34 PF14580 LRR_9: Leucine-rich r 99.1 6.9E-11 1.5E-15 90.7 4.4 127 143-275 15-147 (175)
35 KOG1259 Nischarin, modulator o 99.1 5.6E-12 1.2E-16 102.0 -1.7 128 99-232 284-412 (490)
36 KOG1259 Nischarin, modulator o 99.1 7.6E-12 1.7E-16 101.2 -1.1 127 147-280 284-411 (490)
37 KOG1909 Ran GTPase-activating 99.0 5.7E-11 1.2E-15 97.8 -0.0 207 75-281 30-283 (382)
38 PF13855 LRR_8: Leucine rich r 99.0 3.5E-10 7.5E-15 71.7 3.0 61 219-280 1-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.6E-14 68.5 3.9 59 100-158 2-60 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.8 1.6E-09 3.6E-14 102.6 3.7 128 76-206 524-653 (889)
41 KOG0531 Protein phosphatase 1, 98.8 3.2E-10 6.8E-15 100.1 -2.6 108 95-208 91-199 (414)
42 KOG1859 Leucine-rich repeat pr 98.7 3.9E-10 8.4E-15 101.1 -5.9 179 92-280 102-291 (1096)
43 KOG0531 Protein phosphatase 1, 98.6 3.7E-09 8E-14 93.3 -0.7 172 74-256 94-268 (414)
44 COG5238 RNA1 Ran GTPase-activa 98.6 1.6E-08 3.5E-13 81.1 1.0 204 75-279 30-283 (388)
45 KOG2982 Uncharacterized conser 98.4 2.4E-08 5.3E-13 81.1 -1.7 87 97-183 69-158 (418)
46 KOG4579 Leucine-rich repeat (L 98.4 9.5E-09 2.1E-13 74.1 -4.5 83 98-183 52-135 (177)
47 KOG2120 SCF ubiquitin ligase, 98.3 2.9E-09 6.3E-14 86.3 -8.4 176 101-278 187-373 (419)
48 KOG1859 Leucine-rich repeat pr 98.3 5.1E-09 1.1E-13 94.2 -8.7 126 100-232 165-292 (1096)
49 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3E-11 50.8 3.4 37 219-256 1-37 (44)
50 KOG2120 SCF ubiquitin ligase, 98.2 1.1E-08 2.3E-13 83.1 -7.8 156 96-253 207-373 (419)
51 KOG2982 Uncharacterized conser 98.2 2.9E-07 6.3E-12 74.9 -0.3 184 75-258 71-264 (418)
52 PF08263 LRRNT_2: Leucine rich 98.2 3.4E-06 7.3E-11 49.0 4.2 40 32-71 2-43 (43)
53 KOG4579 Leucine-rich repeat (L 98.1 1.7E-07 3.6E-12 67.8 -2.3 82 124-208 54-136 (177)
54 PF12799 LRR_4: Leucine Rich r 98.1 3E-06 6.4E-11 49.4 3.3 36 196-232 2-37 (44)
55 PRK15386 type III secretion pr 98.1 2E-05 4.4E-10 68.2 8.6 132 75-230 52-188 (426)
56 KOG3665 ZYG-1-like serine/thre 98.0 1.7E-06 3.7E-11 80.4 1.3 30 242-271 249-278 (699)
57 KOG3665 ZYG-1-like serine/thre 98.0 3.4E-06 7.4E-11 78.5 3.0 133 147-281 122-263 (699)
58 COG5238 RNA1 Ran GTPase-activa 98.0 1.7E-06 3.7E-11 69.7 0.8 187 93-280 86-315 (388)
59 PRK15386 type III secretion pr 98.0 5.6E-05 1.2E-09 65.5 9.2 137 95-254 48-188 (426)
60 KOG1644 U2-associated snRNP A' 97.9 3.4E-05 7.4E-10 59.6 5.8 103 100-204 43-149 (233)
61 KOG1644 U2-associated snRNP A' 97.6 0.00013 2.8E-09 56.5 5.4 105 170-277 41-149 (233)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00081 1.8E-08 49.0 7.0 60 118-179 7-66 (129)
63 PF13306 LRR_5: Leucine rich r 97.4 0.0012 2.6E-08 48.1 7.8 59 95-155 8-66 (129)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00016 3.4E-09 58.2 2.9 84 145-232 41-129 (260)
65 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.6E-09 58.9 1.8 41 95-135 61-103 (260)
66 KOG2123 Uncharacterized conser 97.2 1.3E-05 2.9E-10 64.9 -4.4 83 147-233 19-102 (388)
67 KOG2123 Uncharacterized conser 96.6 6.3E-05 1.4E-09 61.1 -5.1 100 122-225 18-123 (388)
68 KOG4308 LRR-containing protein 96.0 3.7E-05 8.1E-10 68.7 -10.6 87 194-280 203-302 (478)
69 PF00560 LRR_1: Leucine Rich R 95.9 0.0039 8.5E-08 30.2 1.1 18 125-143 2-19 (22)
70 KOG1947 Leucine rich repeat pr 95.4 0.0014 3E-08 58.9 -2.9 173 98-270 187-389 (482)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.0059 1.3E-07 29.5 0.5 18 149-167 2-19 (22)
72 PF13504 LRR_7: Leucine rich r 94.4 0.028 6.1E-07 25.2 1.3 13 244-256 2-14 (17)
73 KOG0473 Leucine-rich repeat pr 94.4 0.0012 2.5E-08 52.6 -5.4 84 74-160 41-124 (326)
74 KOG1947 Leucine rich repeat pr 94.3 0.015 3.3E-07 52.2 0.6 129 146-274 187-327 (482)
75 KOG4308 LRR-containing protein 94.3 0.0001 2.2E-09 65.9 -13.1 184 77-260 89-307 (478)
76 smart00370 LRR Leucine-rich re 93.8 0.062 1.4E-06 26.9 2.1 21 243-264 2-22 (26)
77 smart00369 LRR_TYP Leucine-ric 93.8 0.062 1.4E-06 26.9 2.1 21 243-264 2-22 (26)
78 KOG0473 Leucine-rich repeat pr 93.6 0.0012 2.5E-08 52.6 -6.9 87 95-184 38-124 (326)
79 PF13516 LRR_6: Leucine Rich r 92.6 0.047 1E-06 26.8 0.5 20 243-262 2-21 (24)
80 KOG3864 Uncharacterized conser 91.0 0.037 8E-07 43.2 -1.3 87 169-255 99-188 (221)
81 KOG4341 F-box protein containi 88.1 0.24 5.2E-06 43.1 1.2 84 146-229 293-382 (483)
82 smart00365 LRR_SD22 Leucine-ri 85.7 0.71 1.5E-05 23.2 1.7 13 268-280 2-14 (26)
83 KOG4341 F-box protein containi 85.3 0.59 1.3E-05 40.7 2.1 13 194-206 319-331 (483)
84 smart00368 LRR_RI Leucine rich 85.2 0.72 1.6E-05 23.6 1.6 13 268-280 2-14 (28)
85 KOG3864 Uncharacterized conser 82.8 0.36 7.9E-06 37.8 -0.1 82 195-277 101-185 (221)
86 smart00364 LRR_BAC Leucine-ric 79.6 1.2 2.7E-05 22.3 1.2 18 243-261 2-19 (26)
87 KOG3763 mRNA export factor TAP 74.0 1.7 3.6E-05 39.4 1.3 12 245-256 272-283 (585)
88 KOG3763 mRNA export factor TAP 62.3 3.8 8.3E-05 37.2 1.1 62 217-280 216-282 (585)
89 smart00367 LRR_CC Leucine-rich 59.3 6.6 0.00014 19.4 1.2 13 267-279 1-13 (26)
90 KOG4242 Predicted myosin-I-bin 55.4 21 0.00046 32.0 4.4 17 244-260 355-371 (553)
91 PF06336 Corona_5a: Coronaviru 39.6 46 0.00099 20.0 2.8 18 1-18 1-18 (65)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-33 Score=269.68 Aligned_cols=245 Identities=37% Similarity=0.610 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCC
Q 038776 31 NETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNS 110 (281)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 110 (281)
.+.|+.++++|++.+. ++......|....++|.|.|+.|... .+++.|+++++.+.+.++..+..+++|++|++++|.
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 4467889999999985 56566788988888999999999853 689999999999998888888899999999999999
Q ss_pred CccCCchhcc-CCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCc
Q 038776 111 FTNEIPPQIG-HLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPS 189 (281)
Q Consensus 111 ~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 189 (281)
+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|.
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 8877877544 777777777777776654443 2345555555555555444454455555555555555554444444
Q ss_pred cccCCCCCCeEEc------------------------ccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCC
Q 038776 190 SLGNLSSLRGLSL------------------------SRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSI 245 (281)
Q Consensus 190 ~l~~l~~L~~L~l------------------------~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 245 (281)
.+.++++|++|++ ++|.+.+.+|..++.+++|+.|++++|.+++.+|..++.+++|
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 4444444444444 4444444444444555555555555555554455555555555
Q ss_pred CEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 246 QTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 246 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++|++++|.+.+.+|..+.. +++|+.|++++|.+
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l 296 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSL 296 (968)
T ss_pred CEEECcCCeeeccCchhHhh-ccCcCEEECcCCee
Confidence 55555555555555554444 55555555555543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3e-27 Score=228.69 Aligned_cols=205 Identities=38% Similarity=0.630 Sum_probs=130.6
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 45556666666666566666666677777777777666666666666777777777776666666666666666666666
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 299 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC
Confidence 66666666666666666666666666666666666666666666666666666655665565666666666666666555
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+|..+.++++|+.|++++|.+.+.+|..+.. +++|+.|++++|++
T Consensus 300 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l 344 (968)
T PLN00113 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKF 344 (968)
T ss_pred CChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCC
Confidence 5555555556666666666555555554443 55555555555544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1e-22 Score=175.90 Aligned_cols=85 Identities=20% Similarity=0.196 Sum_probs=41.0
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.|++++|.++..-..+|..+.+|..|.|+.|+++..-+..|.++++|+.|+|..|++...-...|..+++|+.|.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 44555555555555444445555555555555555555322334555555555555555554222233333333333333
Q ss_pred ccCCC
Q 038776 155 ALNHL 159 (281)
Q Consensus 155 ~~n~~ 159 (281)
..|.+
T Consensus 253 qrN~I 257 (873)
T KOG4194|consen 253 QRNDI 257 (873)
T ss_pred hhcCc
Confidence 33333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.8e-22 Score=171.71 Aligned_cols=205 Identities=20% Similarity=0.205 Sum_probs=120.3
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++.+|.+...-.+.+..++.||.||||.|.+...--..|..-.++++|+|++|.++..-...|.++.+|.+|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 67888888888877665666777777777777777776332234555566777777777776444455666666666666
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccC------------------------CCCCCeEEcccCCCccc
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN------------------------LSSLRGLSLSRNGFYGS 210 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~------------------------l~~L~~L~l~~n~~~~~ 210 (281)
+.|+++-.-+..|.+++.|+.|++..|.+.-..-..|.. +.++++|++..|+++..
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 666666333334555666666666666554221122333 44455555555555444
Q ss_pred ccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 211 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
-..++.+++.|+.|++++|.+.+.-++.+...++|+.|+|++|+|+ .++..-+..+..|+.|.|++|.+
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccch
Confidence 4445555666666666666666555555656666666666666665 34433333345555555555543
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.84 E-value=3.2e-23 Score=153.51 Aligned_cols=165 Identities=33% Similarity=0.564 Sum_probs=110.2
Q ss_pred CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 174 (281)
+..+.+++.|.+++|.++ .+|..++.+.+|+.|++++|+++ .+|..++++++|+.|+++-|++. .+|.+|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345566666667777666 55666666777777777777666 66666667777777777666665 6666677777777
Q ss_pred EEeCcCCcccc-cCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccC
Q 038776 175 FLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253 (281)
Q Consensus 175 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 253 (281)
.|++.+|.+.. .+|..+..+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+. .+|..++.++.|++|++++|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 77776666653 35556666666777777777665 66666777777777777777666 56777777777777777777
Q ss_pred cccccCChhhhh
Q 038776 254 YIEGEMPLDLGT 265 (281)
Q Consensus 254 ~l~~~~p~~~~~ 265 (281)
.++ .+|.+++.
T Consensus 184 rl~-vlppel~~ 194 (264)
T KOG0617|consen 184 RLT-VLPPELAN 194 (264)
T ss_pred eee-ecChhhhh
Confidence 766 55555443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=3.4e-22 Score=174.19 Aligned_cols=200 Identities=28% Similarity=0.417 Sum_probs=118.1
Q ss_pred CcEEEEEcCCCCcce-ecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCcc-CcCCCCCcEE
Q 038776 75 QRVTILDLQNLKLAG-TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPAS-ISNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L 152 (281)
++++.+.+..|++.. -+|+.+..+..|+.||+|+|++. ..|..+..-+++-+|+|++|++. .+|.. +-++.-|-+|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 344444444444431 23444445555555555555554 44554545555555555555554 33322 2344444445
Q ss_pred EcccCCCCCCCchhcCCCCC------------------------CCEEeCcCCccc-ccCCccccCCCCCCeEEcccCCC
Q 038776 153 SLALNHLAGKIPSEFGSLSK------------------------LQFLSTTANNLT-GNIPSSLGNLSSLRGLSLSRNGF 207 (281)
Q Consensus 153 ~l~~n~~~~~~p~~~~~l~~------------------------L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~ 207 (281)
|+++|++. .+|+-+..+.+ |+.|.+++++-+ ..+|.++..+.+|+.++++.|.+
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 55554444 33433444444 444444443322 34666777777777777777777
Q ss_pred cccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 208 YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 208 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
. .+|+.+-.+++|+.|+|++|+++ .+....+.+.+|++|+++.|+++ .+|..+++ +++|+.|++.+|+++
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKLT 304 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCccc
Confidence 6 67777777777888888888777 45555566677788888888887 78888877 888888888888764
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=3.7e-22 Score=173.96 Aligned_cols=200 Identities=30% Similarity=0.397 Sum_probs=142.4
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCccc------------------
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD------------------ 136 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~------------------ 136 (281)
++...|++++|++....-+.|.++..|-.||+|+|.+. .+|+.+..+.+|+.|.|++|.+.
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 44556666776666332233556666677777777766 56666667777777777776432
Q ss_pred -------ccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776 137 -------GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 137 -------~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
..+|.++..+.+|+.+|++.|.+. ..|+.+.++++|+.|++++|+++ .+....+.+.+|++|+++.|+++
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt- 281 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT- 281 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-
Confidence 235666667777777777777776 77777778888888888888877 44444556677777888888777
Q ss_pred cccccCCCCCCCCeEecccCcCc-CCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 210 SIPDTFGGLKNLVNLSLVVNNLS-GTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 210 ~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+|+.+..+++|+.|++.+|+++ .-+|+-++.+.+|+.++.++|.+. .+|..+++ |++|+.|.|+.|++
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcR-C~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCR-CVKLQKLKLDHNRL 351 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhh-hHHHHHhcccccce
Confidence 77888888888888888888765 347777888888888888888776 77777776 77777777777764
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.80 E-value=9.7e-22 Score=145.65 Aligned_cols=156 Identities=28% Similarity=0.484 Sum_probs=145.8
Q ss_pred cCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCe
Q 038776 120 GHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRG 199 (281)
Q Consensus 120 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 199 (281)
-.+.+.+.|.++.|.++ .+|+.+..+.+|+.|++.+|++. .+|..++.+++|+.|+++.|++. ..|..++.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 36778889999999999 88999999999999999999998 89999999999999999999997 88999999999999
Q ss_pred EEcccCCCcc-cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776 200 LSLSRNGFYG-SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 200 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
|++.+|.+.. .+|..|..+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+- .+|.+++. +..|+.|++.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHHHhcccc
Confidence 9999999874 58888999999999999999998 88999999999999999999998 89999998 999999999999
Q ss_pred cCC
Q 038776 279 QFT 281 (281)
Q Consensus 279 ~l~ 281 (281)
+++
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 874
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=4.7e-22 Score=164.89 Aligned_cols=198 Identities=29% Similarity=0.481 Sum_probs=119.9
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccc-----------------
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG----------------- 137 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~----------------- 137 (281)
..++++.+.++.+. .+|++++.+..++.++.++|.+. .+|..+..+.++..++.+.|.+..
T Consensus 68 ~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 34566666666665 44555555555555555555555 455555555555555555555440
Q ss_pred -----cCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc
Q 038776 138 -----EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP 212 (281)
Q Consensus 138 -----~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 212 (281)
..|..+.++.+|..+++.+|++. ..|+..-.++.|++++...|-+. .+|+.++.+.+|..|++..|.+. .+|
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP 222 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP 222 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence 34444444444444444444444 22332223556666666666554 56666777777777777777765 455
Q ss_pred ccCCCCCCCCeEecccCcCcCCCCcccc-CCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 213 DTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.|.+++.|++++++.|++. .+|.... ++.++..||+++|+++ ++|.+++. +.+|++||+|+|.++
T Consensus 223 -ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS 288 (565)
T ss_pred -CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc
Confidence 5666666666666666665 4554443 6777788888888887 77877777 777888888888764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=3.7e-21 Score=159.61 Aligned_cols=196 Identities=27% Similarity=0.456 Sum_probs=162.6
Q ss_pred EEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEccc
Q 038776 77 VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLAL 156 (281)
Q Consensus 77 l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 156 (281)
+..+.+++|.+. .+.+.+..+..+.++++.+|.+. +.|.+++.+..++.++.+.|.+. .+|..+..+.+|+.+++++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 567788999888 44556889999999999999998 89999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccC-----------------------CCCCCeEEcccCCCcccccc
Q 038776 157 NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN-----------------------LSSLRGLSLSRNGFYGSIPD 213 (281)
Q Consensus 157 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-----------------------l~~L~~L~l~~n~~~~~~~~ 213 (281)
|.+. .+|++++.+-.+..++..+|+++ ..|..+.. ++.|++++...|-+. .+|+
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~ 200 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPP 200 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCCh
Confidence 9887 67777777777777777777765 44444444 445555555555554 7788
Q ss_pred cCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 214 TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 214 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.++.+.+|..||+..|++. .+| .|..+..|++|+++.|++. .+|.+.+++++++..||++.|+++
T Consensus 201 ~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence 8888889999999999887 566 7888888999999999998 899999988999999999999874
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=2.9e-19 Score=148.07 Aligned_cols=123 Identities=24% Similarity=0.296 Sum_probs=88.9
Q ss_pred CCccccceeeCCC--CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccC-Ccccc
Q 038776 61 HFCEWYGVTCSPR--HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQI-NSFDG 137 (281)
Q Consensus 61 ~~c~~~g~~~~~~--~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~ 137 (281)
..|.-.|..-.+. .+..+.+++..|+++...+..|+.++.||.|||++|.++..-|++|.+++++..|.+.+ |+++
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~- 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT- 129 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence 3455555544333 26778899999999966667799999999999999999999999999999998887766 8888
Q ss_pred cCCc-cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCccc
Q 038776 138 EIPA-SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLT 184 (281)
Q Consensus 138 ~~p~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~ 184 (281)
.+|. .|.++..|+.|.+.-|++.-...+.+..++++..|.+-+|.+.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 4543 5666666666666666665444445555555555555555443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.70 E-value=3.4e-16 Score=153.30 Aligned_cols=103 Identities=25% Similarity=0.282 Sum_probs=58.4
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.|++.++.+. .++..+..+++|++|+++++.....+|. +..+++|+.|++++|.....+|..+.++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 56677777777665 4555566666777777766543334543 556666666666665544456666666666666666
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~ 180 (281)
++|.....+|..+ ++++|+.|++++
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsg 713 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSG 713 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCC
Confidence 6554333444332 334444444433
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=9.6e-17 Score=148.63 Aligned_cols=180 Identities=27% Similarity=0.465 Sum_probs=91.4
Q ss_pred cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776 76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA 155 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 155 (281)
.++.|++++|.+. .+|..+. .+|++|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 4555666666555 3444332 35666666666655 4444332 34566666666655 4554432 356666666
Q ss_pred cCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCC
Q 038776 156 LNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235 (281)
Q Consensus 156 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 235 (281)
+|++. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.+++ +
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-L 340 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-L 340 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-C
Confidence 66665 4454332 35666666666665 2333221 23444445554444 233222 1355555555555552 4
Q ss_pred CccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 236 PPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 236 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|++
T Consensus 341 P~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~L 379 (754)
T PRK15370 341 PASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNAL 379 (754)
T ss_pred Chhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcC
Confidence 43332 45666666666655 455433 24566666666554
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=3.7e-18 Score=145.41 Aligned_cols=206 Identities=22% Similarity=0.279 Sum_probs=114.1
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCC---CCEEECCCCCCcc----CCchhccCC-CcccEeeccCCccccc----CCcc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSF---LQKLDLRNNSFTN----EIPPQIGHL-RRLQILYLQINSFDGE----IPAS 142 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~---L~~L~l~~n~~~~----~~~~~~~~l-~~L~~L~l~~n~~~~~----~p~~ 142 (281)
.+++.++++++.+.+..+..+..+.. |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 56677777776665443433333333 7777777776652 222334455 6677777777766521 2333
Q ss_pred CcCCCCCcEEEcccCCCCCC----CchhcCCCCCCCEEeCcCCccccc----CCccccCCCCCCeEEcccCCCccccccc
Q 038776 143 ISNCSNLLVVSLALNHLAGK----IPSEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYGSIPDT 214 (281)
Q Consensus 143 l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 214 (281)
+..+++|++|++++|.+++. ++..+...++|+.|++++|.+.+. ++..+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 44556677777777766632 223344556777777777766532 2233445666777777777665421111
Q ss_pred CC-----CCCCCCeEecccCcCcC----CCCccccCCCCCCEEEcccCcccccCChhhh---hCC-CCCcEEEcccccC
Q 038776 215 FG-----GLKNLVNLSLVVNNLSG----TIPPLIFNISSIQTFDVGSNYIEGEMPLDLG---TTL-PNLRIFSITGNQF 280 (281)
Q Consensus 215 ~~-----~l~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~---~~~-~~L~~L~l~~N~l 280 (281)
+. ..+.|+.|++++|.++. .+...+..+++|+++++++|.+++.....+. ... +.|+.+++.+|+|
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 11 23567777777776651 2233444556677777777777644222111 113 5677777776654
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=6.6e-16 Score=151.30 Aligned_cols=194 Identities=23% Similarity=0.290 Sum_probs=111.4
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.++++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|++|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 5677888877654445554 6677788888888776555777777777777777777765444555543 4455555555
Q ss_pred ccC---------------------CCCCCCchhc------------------------------CCCCCCCEEeCcCCcc
Q 038776 155 ALN---------------------HLAGKIPSEF------------------------------GSLSKLQFLSTTANNL 183 (281)
Q Consensus 155 ~~n---------------------~~~~~~p~~~------------------------------~~l~~L~~L~l~~n~~ 183 (281)
++| .+. .+|..+ ...++|+.|++++|..
T Consensus 712 sgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 712 SGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred CCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 443 322 222211 0123566677777766
Q ss_pred cccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhh
Q 038776 184 TGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDL 263 (281)
Q Consensus 184 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~ 263 (281)
.+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|+.|++++|.+. .+|.++
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si 865 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWI 865 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHH
Confidence 66677777788888888888775444566544 4555666665554333233322 133444444444444 344444
Q ss_pred hhCCCCCcEEEccc
Q 038776 264 GTTLPNLRIFSITG 277 (281)
Q Consensus 264 ~~~~~~L~~L~l~~ 277 (281)
.. +++|+.|++++
T Consensus 866 ~~-l~~L~~L~L~~ 878 (1153)
T PLN03210 866 EK-FSNLSFLDMNG 878 (1153)
T ss_pred hc-CCCCCEEECCC
Confidence 33 44444444444
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=4.6e-18 Score=144.85 Aligned_cols=206 Identities=23% Similarity=0.262 Sum_probs=152.7
Q ss_pred CcEEEEEcCCCCcce------ecCccCcCCCCCCEEECCCCCCccCCchhccCCCc---ccEeeccCCcccc----cCCc
Q 038776 75 QRVTILDLQNLKLAG------TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRR---LQILYLQINSFDG----EIPA 141 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~l~~n~~~~----~~p~ 141 (281)
+.++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|.+.+ .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 568889988877652 23445677889999999999987656666655555 9999999998873 2333
Q ss_pred cCcCC-CCCcEEEcccCCCCCC----CchhcCCCCCCCEEeCcCCccccc----CCccccCCCCCCeEEcccCCCccc--
Q 038776 142 SISNC-SNLLVVSLALNHLAGK----IPSEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYGS-- 210 (281)
Q Consensus 142 ~l~~l-~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~-- 210 (281)
.+..+ ++|+.|++++|.+++. ++..+..+++|+.|++++|.+++. ++..+...++|++|++++|.+.+.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 45566 8999999999998843 334566778999999999998742 334455667999999999998743
Q ss_pred --ccccCCCCCCCCeEecccCcCcCCCCcccc-----CCCCCCEEEcccCccccc----CChhhhhCCCCCcEEEccccc
Q 038776 211 --IPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-----NISSIQTFDVGSNYIEGE----MPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 211 --~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l~~~----~p~~~~~~~~~L~~L~l~~N~ 279 (281)
++..+..+++|+.|++++|.+++.....+. ..+.|++|++++|.+++. +...+. .+++|+.+++++|+
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~-~~~~L~~l~l~~N~ 289 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA-EKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh-cCCCccEEECCCCC
Confidence 345566789999999999998753222221 247899999999998732 222333 36899999999998
Q ss_pred CC
Q 038776 280 FT 281 (281)
Q Consensus 280 l~ 281 (281)
++
T Consensus 290 l~ 291 (319)
T cd00116 290 FG 291 (319)
T ss_pred Cc
Confidence 75
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=4.6e-16 Score=143.63 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=54.3
Q ss_pred CCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEc
Q 038776 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSI 275 (281)
Q Consensus 196 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l 275 (281)
+|+.|++++|.++ .+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.. +++|+.|++
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~-L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNL 452 (788)
T ss_pred ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhh-ccCCCeEEC
Confidence 4566666666665 34432 246777777777776 35543 246778888888888 78988876 999999999
Q ss_pred ccccCC
Q 038776 276 TGNQFT 281 (281)
Q Consensus 276 ~~N~l~ 281 (281)
++|+|+
T Consensus 453 s~N~Ls 458 (788)
T PRK15387 453 EGNPLS 458 (788)
T ss_pred CCCCCC
Confidence 999985
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=5.9e-16 Score=143.44 Aligned_cols=182 Identities=27% Similarity=0.496 Sum_probs=147.6
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+.+.+++++++++ .+|..+. ++++.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45678999998888 5666554 57999999999998 6776553 58999999999998 6776553 57999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++ .
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-A 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-c
Confidence 999998 7777654 58999999999998 5676553 58999999999998 4665443 57999999999998 4
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|+|+
T Consensus 319 LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 319 LPETLP--PGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT 359 (754)
T ss_pred CCcccc--ccceeccccCCccc-cCChhh---cCcccEEECCCCCCC
Confidence 665443 68999999999998 588655 378999999999874
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=3.8e-18 Score=154.54 Aligned_cols=197 Identities=25% Similarity=0.397 Sum_probs=117.4
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.++++.+.+. .+|+.+..+.+|+.++..+|.+. .+|..+....+|+.|....|.+. .+|.....+..|++|++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 56777888888777 45677778888888888887775 55555544555555555555544 44444445555555555
Q ss_pred ccCCCC-------------------------------------------------CCCchhcCCCCCCCEEeCcCCcccc
Q 038776 155 ALNHLA-------------------------------------------------GKIPSEFGSLSKLQFLSTTANNLTG 185 (281)
Q Consensus 155 ~~n~~~-------------------------------------------------~~~p~~~~~l~~L~~L~l~~n~~~~ 185 (281)
..|++. ....+.+...++|+.|++++|++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~- 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN- 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence 555443 333333444555666666666555
Q ss_pred cCC-ccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhh
Q 038776 186 NIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLG 264 (281)
Q Consensus 186 ~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~ 264 (281)
.+| ..+.++..|++|+++||.++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|.++.-......
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 333 34555556666666666655 55555556666666666666655 445 566677777777777777632211111
Q ss_pred hCCCCCcEEEccccc
Q 038776 265 TTLPNLRIFSITGNQ 279 (281)
Q Consensus 265 ~~~~~L~~L~l~~N~ 279 (281)
. .|+|++||++||.
T Consensus 474 p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 P-SPNLKYLDLSGNT 487 (1081)
T ss_pred C-CcccceeeccCCc
Confidence 1 3678888888775
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=1.3e-17 Score=151.24 Aligned_cols=189 Identities=28% Similarity=0.388 Sum_probs=143.5
Q ss_pred CCCCcceecCccCcCCCCCCEEECCCCCCccCCchhcc--------------------------CCCcccEeeccCCccc
Q 038776 83 QNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG--------------------------HLRRLQILYLQINSFD 136 (281)
Q Consensus 83 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--------------------------~l~~L~~L~l~~n~~~ 136 (281)
..|.+. .+|+....++.|++|++..|.+. ..|+.+- .++.|+.|.+.+|.++
T Consensus 295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 334443 35565666888999999988876 4443221 1345677788888888
Q ss_pred ccCCccCcCCCCCcEEEcccCCCCCCCch-hcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccC
Q 038776 137 GEIPASISNCSNLLVVSLALNHLAGKIPS-EFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF 215 (281)
Q Consensus 137 ~~~p~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 215 (281)
...-+.+.++++|++|++++|++. .+|+ .+.++..|++|++++|+++ .+|..+..++.|++|...+|++. .+| .+
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~ 448 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL 448 (1081)
T ss_pred ccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence 766677889999999999999998 5665 4889999999999999998 88999999999999999999998 788 78
Q ss_pred CCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776 216 GGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 216 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
..++.|+.+|++.|+++...-...-..++|++||+++|.-. ......+..+.++...++.-|
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence 88999999999999998543333334489999999999632 233333333566666665544
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=7.1e-15 Score=135.21 Aligned_cols=151 Identities=31% Similarity=0.513 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCc-----cccceeeCCC--C--CcEEEEEcCCCCcceecCccCcCCC
Q 038776 29 SGNETDRAALLEFKSKITNDALGVLGSWNDSIHFC-----EWYGVTCSPR--H--QRVTILDLQNLKLAGTLPPHIGNLS 99 (281)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~g~~~~~~--~--~~l~~l~l~~~~l~~~~~~~~~~l~ 99 (281)
.....|..+|..++..+.. +. ..+|.. ++| .|.|+.|... . ..++.|+++++.+.+.+|..+..++
T Consensus 368 ~t~~~~~~aL~~~k~~~~~-~~--~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGL-PL--RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred ccCchHHHHHHHHHHhcCC-cc--cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 4455678899999988742 21 136864 344 7999999532 1 2488899999999999998899999
Q ss_pred CCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCC-CCCCEEeC
Q 038776 100 FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSL-SKLQFLST 178 (281)
Q Consensus 100 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l-~~L~~L~l 178 (281)
+|+.|++++|.+.+.+|..++.+++|+.|++++|.++|.+|..++++++|++|++++|.+.+.+|..+... .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999998899889999999999999999998899989999999999999999998888887653 45667777
Q ss_pred cCCccc
Q 038776 179 TANNLT 184 (281)
Q Consensus 179 ~~n~~~ 184 (281)
.+|...
T Consensus 523 ~~N~~l 528 (623)
T PLN03150 523 TDNAGL 528 (623)
T ss_pred cCCccc
Confidence 777544
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=2.8e-17 Score=136.39 Aligned_cols=204 Identities=25% Similarity=0.279 Sum_probs=148.0
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCC-CCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRN-NSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 153 (281)
++++.||+++|.++..-|+.|.++..+..|-+.+ |.++..--+.|+++..++.|.+.-|.+.-.....+..+++|..|.
T Consensus 91 ~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLs 170 (498)
T KOG4237|consen 91 HRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLS 170 (498)
T ss_pred hhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhc
Confidence 7899999999999988899999999988877776 888843334777777777777776666544445566666666666
Q ss_pred cccCCCCCCCch-hcCCCCCCCEEeCcCCc--------------------------------------------------
Q 038776 154 LALNHLAGKIPS-EFGSLSKLQFLSTTANN-------------------------------------------------- 182 (281)
Q Consensus 154 l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~-------------------------------------------------- 182 (281)
+..|.+. .++. .+..+..++.+.+..|.
T Consensus 171 lyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e 249 (498)
T KOG4237|consen 171 LYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE 249 (498)
T ss_pred ccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH
Confidence 6666655 2222 34444444444443333
Q ss_pred -----------ccccCC-ccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEc
Q 038776 183 -----------LTGNIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDV 250 (281)
Q Consensus 183 -----------~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 250 (281)
..+..| ..+..+++|+.|++++|.+++.-+.+|.++.++++|+|..|++...-...|.++.+|++|+|
T Consensus 250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L 329 (498)
T KOG4237|consen 250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSL 329 (498)
T ss_pred hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeee
Confidence 111222 23566788999999999998888888999999999999999887555667888899999999
Q ss_pred ccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 251 GSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 251 ~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+|+|+.-.|. .++.+..|.+|.+-.|+|
T Consensus 330 ~~N~it~~~~~-aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 330 YDNQITTVAPG-AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cCCeeEEEecc-cccccceeeeeehccCcc
Confidence 99999854444 445588899999988886
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=3.6e-14 Score=131.26 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCccc
Q 038776 76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFD 136 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 136 (281)
+++.|++.+|.++ .+|.. .++|++|++++|.++ .+|.. .++|+.|++++|.+.
T Consensus 223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence 4566666666665 34432 356677777777666 34432 234444544444443
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.56 E-value=5.9e-17 Score=140.08 Aligned_cols=178 Identities=28% Similarity=0.473 Sum_probs=141.1
Q ss_pred EEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776 78 TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN 157 (281)
Q Consensus 78 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 157 (281)
+..|++.|.+. .+|..+..+-.|+.+.+..|.+. .+|.++.++..|++|+|+.|+++ .+|..++.++ |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34567777776 66766766777788888888777 77888888888888888888888 7888887776 888888888
Q ss_pred CCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCc
Q 038776 158 HLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP 237 (281)
Q Consensus 158 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 237 (281)
+++ .+|..++.++.|..|+.+.|.+. .+|..++.+.+|+.|+++.|++. .+|..+..+ .|..||+++|++. .+|-
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecch
Confidence 887 77888888888888888888887 67888888888888888888887 666666654 4788888888887 6788
Q ss_pred cccCCCCCCEEEcccCcccccCChhhhh
Q 038776 238 LIFNISSIQTFDVGSNYIEGEMPLDLGT 265 (281)
Q Consensus 238 ~l~~~~~L~~L~l~~n~l~~~~p~~~~~ 265 (281)
.|.++++|++|.|.+|++. ..|..++.
T Consensus 229 ~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred hhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 8888888888888888887 56666654
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.53 E-value=2.7e-16 Score=136.05 Aligned_cols=175 Identities=28% Similarity=0.489 Sum_probs=159.5
Q ss_pred CCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEE
Q 038776 97 NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL 176 (281)
Q Consensus 97 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 176 (281)
.+......|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|++++|+.|+++ .+|..++.++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3455577899999998 88998999999999999999998 89999999999999999999998 8899999888 9999
Q ss_pred eCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776 177 STTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256 (281)
Q Consensus 177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 256 (281)
.+++|+++ .+|..++....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..+ .|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence 99999998 78999998899999999999998 88999999999999999999998 688888865 4899999999998
Q ss_pred ccCChhhhhCCCCCcEEEcccccCC
Q 038776 257 GEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 257 ~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.+|..+.+ +..|++|-|.+|+++
T Consensus 225 -~iPv~fr~-m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 -YLPVDFRK-MRHLQVLQLENNPLQ 247 (722)
T ss_pred -ecchhhhh-hhhheeeeeccCCCC
Confidence 89999987 999999999999974
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.47 E-value=5.6e-14 Score=123.29 Aligned_cols=177 Identities=36% Similarity=0.585 Sum_probs=114.7
Q ss_pred CcCCCCCCEEECCCCCCccCCchhccCCC-cccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCC
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLR-RLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKL 173 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 173 (281)
+..++.++.|++.+|.+. .++.....++ +|+.|++++|.+. .+|..+..+++|+.|+++.|++. .+|...+..++|
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence 334456777777777776 5555555553 7777777777776 55556667777777777777776 555555566777
Q ss_pred CEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccC
Q 038776 174 QFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253 (281)
Q Consensus 174 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 253 (281)
+.|++++|++. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++. .++..++.++++++|++++|
T Consensus 189 ~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccc
Confidence 77777777776 55554445556777777777533 44555566666666666667665 33566666666777777777
Q ss_pred cccccCChhhhhCCCCCcEEEcccccC
Q 038776 254 YIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 254 ~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.++ .++. +.. +.+++.|++++|.+
T Consensus 266 ~i~-~i~~-~~~-~~~l~~L~~s~n~~ 289 (394)
T COG4886 266 QIS-SISS-LGS-LTNLRELDLSGNSL 289 (394)
T ss_pred ccc-cccc-ccc-cCccCEEeccCccc
Confidence 776 4443 333 67777777777654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.39 E-value=4.5e-13 Score=117.59 Aligned_cols=179 Identities=34% Similarity=0.567 Sum_probs=151.9
Q ss_pred CcEEEEEcCCCCcceecCccCcCCC-CCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLS-FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 153 (281)
..++.+++.++.+. .++....... +|+.|+++.|.+. .+|..+..+++|+.|+++.|.+. .+|...+..+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 45888999999888 5666666674 9999999999998 67777889999999999999999 7787766899999999
Q ss_pred cccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776 154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 233 (281)
+++|++. .+|........|+.+.+++|... ..+..+..+.++..+.+..|++. .++..++.+++++.|++++|.++.
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc
Confidence 9999998 78877777778999999999654 55677888899999999999886 447788889999999999999984
Q ss_pred CCCccccCCCCCCEEEcccCcccccCCh
Q 038776 234 TIPPLIFNISSIQTFDVGSNYIEGEMPL 261 (281)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~ 261 (281)
++. ++...+++.|++++|.+....|.
T Consensus 270 -i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 270 -ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -ccc-ccccCccCEEeccCccccccchh
Confidence 444 88899999999999988855544
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=1.7e-12 Score=119.52 Aligned_cols=107 Identities=29% Similarity=0.530 Sum_probs=65.4
Q ss_pred CCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEccc
Q 038776 173 LQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGS 252 (281)
Q Consensus 173 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 252 (281)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|++++.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CcccccCChhhhhCCCCCcEEEccccc
Q 038776 253 NYIEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 253 n~l~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
|.++|.+|..+...+.++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 666666666554433445555555554
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.25 E-value=1.9e-12 Score=122.17 Aligned_cols=189 Identities=21% Similarity=0.290 Sum_probs=121.0
Q ss_pred HHHHHHHHhhcccccCCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCC---Cc-cccceeeCCCCCcEEEEEcCCCC--
Q 038776 13 FCFSLHEFLGASAFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIH---FC-EWYGVTCSPRHQRVTILDLQNLK-- 86 (281)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~---~c-~~~g~~~~~~~~~l~~l~l~~~~-- 86 (281)
..+.|||+++++|.+++....+...-.-+..............|...+. .+ ......+....+.+++|-+..+.
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~ 558 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW 558 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchh
Confidence 4578999999999888873322111000110000000112233432221 11 11122223333568888888876
Q ss_pred cceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchh
Q 038776 87 LAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSE 166 (281)
Q Consensus 87 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~ 166 (281)
+.......|..++.|++||+++|.-.+.+|..++.+.+|++|+++++.+. .+|..+.++..|.+|++..+.....+|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence 44333344778999999999998777789999999999999999999998 89999999999999999988876666666
Q ss_pred cCCCCCCCEEeCcCCccc--ccCCccccCCCCCCeEEc
Q 038776 167 FGSLSKLQFLSTTANNLT--GNIPSSLGNLSSLRGLSL 202 (281)
Q Consensus 167 ~~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l 202 (281)
...+.+|++|.+...... ...-..+..+.+|+.+..
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 777999999998654421 122233344444444443
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.9e-12 Score=108.14 Aligned_cols=204 Identities=23% Similarity=0.233 Sum_probs=130.9
Q ss_pred CcEEEEEcCCCCcceecC-ccCcCCCCCCEEECCCCCCccC--CchhccCCCcccEeeccCCcccccCCc-cCcCCCCCc
Q 038776 75 QRVTILDLQNLKLAGTLP-PHIGNLSFLQKLDLRNNSFTNE--IPPQIGHLRRLQILYLQINSFDGEIPA-SISNCSNLL 150 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~ 150 (281)
..++.+.+.+..+....- .....+++++.||++.|-+... +-.....+|+|+.|+++.|.+.-.... .-..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 456667777766552111 3456788888888888876632 333455788888888888877521111 123567888
Q ss_pred EEEcccCCCCCCCc-hhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc--ccCCCCCCCCeEecc
Q 038776 151 VVSLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP--DTFGGLKNLVNLSLV 227 (281)
Q Consensus 151 ~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~ 227 (281)
.|.++.|.++..-. .....+|+|+.|++..|...........-+..|++|+|++|.+- ..+ ...+.++.|+.|.++
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhcc
Confidence 88888888874322 22456788888888888532232233344677888888888876 333 345677888888888
Q ss_pred cCcCcCC-CCcc-----ccCCCCCCEEEcccCcccccCC--hhhhhCCCCCcEEEcccccCC
Q 038776 228 VNNLSGT-IPPL-----IFNISSIQTFDVGSNYIEGEMP--LDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 228 ~n~~~~~-~~~~-----l~~~~~L~~L~l~~n~l~~~~p--~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.+.+... .|+. ...+++|++|++..|++. +.+ ..+.. +++|+.|.+-.|.|+
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~-l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRT-LENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhc-cchhhhhhccccccc
Confidence 8877632 2322 345678888888888885 222 12333 677777777777653
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=3.1e-11 Score=92.62 Aligned_cols=107 Identities=27% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCCcccEeeccCCcccccCCccCc-CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccc-cCCCCCC
Q 038776 121 HLRRLQILYLQINSFDGEIPASIS-NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSL-GNLSSLR 198 (281)
Q Consensus 121 ~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~ 198 (281)
+..+++.|+|.+|.++ .+ +.++ .+.+|+.|++++|.+. .+ +.+..++.|+.|++++|.++. +...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 3345566666666655 22 2333 3455666666666555 22 234445555555555555542 22222 2345555
Q ss_pred eEEcccCCCcccc-cccCCCCCCCCeEecccCcCc
Q 038776 199 GLSLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 199 ~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~ 232 (281)
+|++++|++...- -..+..+++|+.|++.+|.++
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555555554211 122333444444444444444
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.7e-12 Score=108.31 Aligned_cols=183 Identities=23% Similarity=0.190 Sum_probs=134.3
Q ss_pred cCCCCCCEEECCCCCCccCCc--hhccCCCcccEeeccCCccccc--CCccCcCCCCCcEEEcccCCCCCCCchh-cCCC
Q 038776 96 GNLSFLQKLDLRNNSFTNEIP--PQIGHLRRLQILYLQINSFDGE--IPASISNCSNLLVVSLALNHLAGKIPSE-FGSL 170 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~--~p~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l 170 (281)
.+++.|+.+.+.+..+. ..+ .....+++++.||++.|-+... +......+|+|+.|+++.|++....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45778999999998876 222 3566899999999999977632 2334568999999999999987322221 2367
Q ss_pred CCCCEEeCcCCcccccC-CccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCC--ccccCCCCCCE
Q 038776 171 SKLQFLSTTANNLTGNI-PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP--PLIFNISSIQT 247 (281)
Q Consensus 171 ~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~l~~~~~L~~ 247 (281)
+.++.|.++.|.++... -..+..+++|+.|++..|..-..-......+..|++|+|++|++.. .+ ...+.+++|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhh
Confidence 88999999999997432 2344568999999999996322323334457899999999998873 33 46678899999
Q ss_pred EEcccCccccc-CCh----hhhhCCCCCcEEEcccccC
Q 038776 248 FDVGSNYIEGE-MPL----DLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 248 L~l~~n~l~~~-~p~----~~~~~~~~L~~L~l~~N~l 280 (281)
|.++.+.+... .|. +....+++|++|+++.|++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 99999988742 111 1234589999999999987
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-11 Score=102.04 Aligned_cols=185 Identities=21% Similarity=0.251 Sum_probs=127.9
Q ss_pred CcCCCCCCEEECCCCCCccCCch----hccCCCcccEeeccCCccccc-------------CCccCcCCCCCcEEEcccC
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPP----QIGHLRRLQILYLQINSFDGE-------------IPASISNCSNLLVVSLALN 157 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~-------------~p~~l~~l~~L~~L~l~~n 157 (281)
+...++|++++||.|.+...-+. .+..+..|++|.|.+|.+... ......+-++|++++.++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 44567889999999887643333 345678888899988877521 1122345578999999988
Q ss_pred CCCCCC----chhcCCCCCCCEEeCcCCccccc----CCccccCCCCCCeEEcccCCCcc----cccccCCCCCCCCeEe
Q 038776 158 HLAGKI----PSEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYG----SIPDTFGGLKNLVNLS 225 (281)
Q Consensus 158 ~~~~~~----p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~ 225 (281)
++.... ...+...+.|+.+.+..|.+... +...+.++++|+.|++++|.++. .+...+..+++|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 877332 23456678889999888877522 22456778999999999998863 2445566778899999
Q ss_pred cccCcCcCCCC----ccc-cCCCCCCEEEcccCcccccCC----hhhhhCCCCCcEEEcccccC
Q 038776 226 LVVNNLSGTIP----PLI-FNISSIQTFDVGSNYIEGEMP----LDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 226 l~~n~~~~~~~----~~l-~~~~~L~~L~l~~n~l~~~~p----~~~~~~~~~L~~L~l~~N~l 280 (281)
+++|.+...-. ..+ ...++|+.|.+.+|.++...- ..+.. .|.|..|+|++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 99988864322 222 235789999999998874322 22333 78899999999986
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=6.9e-11 Score=90.72 Aligned_cols=127 Identities=25% Similarity=0.319 Sum_probs=51.2
Q ss_pred CcCCCCCcEEEcccCCCCCCCchhcC-CCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccC-CCCCC
Q 038776 143 ISNCSNLLVVSLALNHLAGKIPSEFG-SLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF-GGLKN 220 (281)
Q Consensus 143 l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~ 220 (281)
+.+..++++|++++|.+. .+ +.++ .+.+|+.|++++|.++.. ..+..+++|++|++++|.++ .+...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 445667899999999997 33 3565 588999999999999843 35778899999999999998 444333 35799
Q ss_pred CCeEecccCcCcCC-CCccccCCCCCCEEEcccCcccccCCh---hhhhCCCCCcEEEc
Q 038776 221 LVNLSLVVNNLSGT-IPPLIFNISSIQTFDVGSNYIEGEMPL---DLGTTLPNLRIFSI 275 (281)
Q Consensus 221 L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~p~---~~~~~~~~L~~L~l 275 (281)
|+.|++++|++... --..+..+++|+.|++.+|+++.. +. .+...+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 99999999999742 125677889999999999999843 32 12234999999874
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=5.6e-12 Score=102.01 Aligned_cols=128 Identities=27% Similarity=0.285 Sum_probs=56.0
Q ss_pred CCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeC
Q 038776 99 SFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLST 178 (281)
Q Consensus 99 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 178 (281)
+.|+.+|+++|.++ .+..++.-.|.++.|+++.|.+. .+. .+..+++|+.||+++|.++ .+..+-.++.+++.|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34455555555544 33333444455555555555444 221 1444455555555555444 22222234444445555
Q ss_pred cCCcccccCCccccCCCCCCeEEcccCCCcccc-cccCCCCCCCCeEecccCcCc
Q 038776 179 TANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~ 232 (281)
++|.+.. ...+..+.+|..|++++|++...- -..+++++.|+.+.+.+|.+.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 5544431 133344444555555555443211 122444444444444444444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=7.6e-12 Score=101.24 Aligned_cols=127 Identities=26% Similarity=0.293 Sum_probs=65.4
Q ss_pred CCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEec
Q 038776 147 SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSL 226 (281)
Q Consensus 147 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 226 (281)
.-|+++|+++|.++ .+.++..-.|.++.|+++.|.+... ..+..+++|+.|++++|.++ .+..+-..+-++++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 44556666666655 4444455556666666666665422 22555566666666666554 33334444555555666
Q ss_pred ccCcCcCCCCccccCCCCCCEEEcccCccccc-CChhhhhCCCCCcEEEcccccC
Q 038776 227 VVNNLSGTIPPLIFNISSIQTFDVGSNYIEGE-MPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 227 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++|.+.. + .-++.+=+|..||+++|+|... -...+++ +|.|+.+.+.+|++
T Consensus 360 a~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHhh-h-hhhHhhhhheeccccccchhhHHHhccccc-ccHHHHHhhcCCCc
Confidence 6655541 1 2233344455566666655411 1112333 56666666666554
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=5.7e-11 Score=97.79 Aligned_cols=207 Identities=20% Similarity=0.309 Sum_probs=124.2
Q ss_pred CcEEEEEcCCCCccee----cCccCcCCCCCCEEECCCC---CCccCCch-------hccCCCcccEeeccCCcccccCC
Q 038776 75 QRVTILDLQNLKLAGT----LPPHIGNLSFLQKLDLRNN---SFTNEIPP-------QIGHLRRLQILYLQINSFDGEIP 140 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n---~~~~~~~~-------~~~~l~~L~~L~l~~n~~~~~~p 140 (281)
..++.+++++|.+... +...+.+.+.|+..+++.- +....+|. ++..+++|++|+||.|-+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4567777777776532 3344556667777777652 12223333 33456677788888777654333
Q ss_pred cc----CcCCCCCcEEEcccCCCCCCCc-------------hhcCCCCCCCEEeCcCCccccc----CCccccCCCCCCe
Q 038776 141 AS----ISNCSNLLVVSLALNHLAGKIP-------------SEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRG 199 (281)
Q Consensus 141 ~~----l~~l~~L~~L~l~~n~~~~~~p-------------~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~ 199 (281)
.. +.++..|++|.+.+|.+..... ...++-+.|+.+...+|.+... +...+...+.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 32 3456777777777777652111 1133456777777777776532 1233445567777
Q ss_pred EEcccCCCccc----ccccCCCCCCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCChhhh----hCC
Q 038776 200 LSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMPLDLG----TTL 267 (281)
Q Consensus 200 L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~----~~~ 267 (281)
+.+..|.+... +...+..+++|+.|||.+|-++.. +...+..+++|+.|++++|.+.......+. ...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 77777776421 233456777788888877776521 334555667777777777777654444332 236
Q ss_pred CCCcEEEcccccCC
Q 038776 268 PNLRIFSITGNQFT 281 (281)
Q Consensus 268 ~~L~~L~l~~N~l~ 281 (281)
|+|+.+.+.+|.++
T Consensus 270 p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 270 PSLEVLELAGNEIT 283 (382)
T ss_pred CCCceeccCcchhH
Confidence 77777777777654
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=3.5e-10 Score=71.66 Aligned_cols=61 Identities=31% Similarity=0.524 Sum_probs=42.1
Q ss_pred CCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 219 KNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 219 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++|+.|++++|+++...+..+..+++|++|++++|.+. .++...+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 45677777777777555566777777777777777776 44544555577777777777764
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.6e-09 Score=68.52 Aligned_cols=59 Identities=34% Similarity=0.418 Sum_probs=30.1
Q ss_pred CCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCC
Q 038776 100 FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNH 158 (281)
Q Consensus 100 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 158 (281)
+|++|++++|.+....+..|..+++|++|++++|.+....|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555553333445555555555555555553334445555555555555554
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.6e-09 Score=102.58 Aligned_cols=128 Identities=29% Similarity=0.334 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCC--CccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776 76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNS--FTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 153 (281)
.++...+-++.+. .++... ..+.|++|-+..|. +.......|..++.|++||+++|.-.+.+|..++.+-+||+|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 4455666666554 333333 33478899888886 4433444578899999999999877779999999999999999
Q ss_pred cccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCC
Q 038776 154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNG 206 (281)
Q Consensus 154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 206 (281)
++++.+. .+|..+.+++.|.+|++..+.....+|.....+.+|++|.+....
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999998 899999999999999999887665566666779999999987664
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=3.2e-10 Score=100.12 Aligned_cols=108 Identities=28% Similarity=0.349 Sum_probs=54.4
Q ss_pred CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 174 (281)
+..++.++.+++..|.+. .+...+..+++|++|++++|.++. +. .+..++.|+.|++.+|.+. . ...+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~-~-~~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLIS-D-ISGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcch-h-ccCCccchhhh
Confidence 444555566666666555 233224455566666666665552 21 2344455666666666554 1 12233455566
Q ss_pred EEeCcCCcccccCC-ccccCCCCCCeEEcccCCCc
Q 038776 175 FLSTTANNLTGNIP-SSLGNLSSLRGLSLSRNGFY 208 (281)
Q Consensus 175 ~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~ 208 (281)
.+++++|.+....+ . ...+.+++.+.+.+|.+.
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 66666665553222 1 344555555555555543
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.68 E-value=3.9e-10 Score=101.14 Aligned_cols=179 Identities=26% Similarity=0.310 Sum_probs=113.4
Q ss_pred CccCcCCCCCCEEECCCCCCccCCchhccCC-CcccEeeccCCccc---c---cCCccCcC---CCCCcEEEcccCCCCC
Q 038776 92 PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHL-RRLQILYLQINSFD---G---EIPASISN---CSNLLVVSLALNHLAG 161 (281)
Q Consensus 92 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~---~---~~p~~l~~---l~~L~~L~l~~n~~~~ 161 (281)
|-.+..++.||+|.+.++.+.. ...+..+ .+|++|.-.+ .+. . .-...+++ .-.|.+.++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 4456777889999998888762 1111111 1233332221 111 0 00111221 235677788888776
Q ss_pred CCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccC
Q 038776 162 KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFN 241 (281)
Q Consensus 162 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~ 241 (281)
....++.-++.++.|+++.|+++.. ..+..++.|++||+++|.++ .+|..-..-..|+.|.+++|.++. + ..+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~t-L-~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTT-L-RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHh-h-hhHHh
Confidence 5556677778888899999888754 36778888999999999887 666543333358888888888872 2 34567
Q ss_pred CCCCCEEEcccCcccccCChh-hhhCCCCCcEEEcccccC
Q 038776 242 ISSIQTFDVGSNYIEGEMPLD-LGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 242 ~~~L~~L~l~~n~l~~~~p~~-~~~~~~~L~~L~l~~N~l 280 (281)
+.+|+.||+++|-+.+----. ++. +..|+.|+|.||++
T Consensus 253 LksL~~LDlsyNll~~hseL~pLws-Ls~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWS-LSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHH-HHHHHHHhhcCCcc
Confidence 788888899988776422211 233 66788888888875
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=3.7e-09 Score=93.35 Aligned_cols=172 Identities=26% Similarity=0.280 Sum_probs=111.9
Q ss_pred CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776 74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 153 (281)
...++.+++.+|.+... ...+..+.+|++|++++|.+.. +. .+..++.|+.|++++|.++ .+ ..+..++.|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhc-ccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence 47788999999999843 3337788999999999999983 32 3667888999999999997 33 3455689999999
Q ss_pred cccCCCCCCCchh-cCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCC--CCCeEecccCc
Q 038776 154 LALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK--NLVNLSLVVNN 230 (281)
Q Consensus 154 l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~ 230 (281)
+++|.+...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.++..-+ +..+. .|+.+++.+|.
T Consensus 169 l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred CCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 99999984333 2 57788899999999887522 223333444444555555542111 11111 25566666665
Q ss_pred CcCCCCccccCCCCCCEEEcccCccc
Q 038776 231 LSGTIPPLIFNISSIQTFDVGSNYIE 256 (281)
Q Consensus 231 ~~~~~~~~l~~~~~L~~L~l~~n~l~ 256 (281)
+. ..+..+..+..+..|++.+|.+.
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cc-cccccccccccccccchhhcccc
Confidence 55 22233444455555555555443
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.57 E-value=1.6e-08 Score=81.09 Aligned_cols=204 Identities=19% Similarity=0.189 Sum_probs=109.7
Q ss_pred CcEEEEEcCCCCccee----cCccCcCCCCCCEEECCCCCC---ccCCc-------hhccCCCcccEeeccCCcccccCC
Q 038776 75 QRVTILDLQNLKLAGT----LPPHIGNLSFLQKLDLRNNSF---TNEIP-------PQIGHLRRLQILYLQINSFDGEIP 140 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~---~~~~~-------~~~~~l~~L~~L~l~~n~~~~~~p 140 (281)
..++.+++++|.+... +...+.+-++|+..+++.-.. ...++ +++.++|+|+..+|+.|-+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4456677777766532 333455556666666664321 11222 334566777777777776665555
Q ss_pred cc----CcCCCCCcEEEcccCCCCCCCchh-------------cCCCCCCCEEeCcCCcccccCCcc-----ccCCCCCC
Q 038776 141 AS----ISNCSNLLVVSLALNHLAGKIPSE-------------FGSLSKLQFLSTTANNLTGNIPSS-----LGNLSSLR 198 (281)
Q Consensus 141 ~~----l~~l~~L~~L~l~~n~~~~~~p~~-------------~~~l~~L~~L~l~~n~~~~~~~~~-----l~~l~~L~ 198 (281)
+. +++-..|.+|.+++|.+....... ...-|.|+.+....|++. ..+.. +..-..|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCce
Confidence 43 345566777777777655211111 224466777777777664 22211 11114566
Q ss_pred eEEcccCCCcccc-----cccCCCCCCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCChhhhhC---
Q 038776 199 GLSLSRNGFYGSI-----PDTFGGLKNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTT--- 266 (281)
Q Consensus 199 ~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~--- 266 (281)
++.+..|.+.... -..+..+.+|+.||+++|-++-. +...+..++.|+.|.+.+|-++.....++.+.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 7777777665221 01123456777777777766521 22344455666777777766655544444332
Q ss_pred --CCCCcEEEccccc
Q 038776 267 --LPNLRIFSITGNQ 279 (281)
Q Consensus 267 --~~~L~~L~l~~N~ 279 (281)
.|+|..|...+|.
T Consensus 269 ~~~p~l~~L~~~Yne 283 (388)
T COG5238 269 KFVPNLMPLPGDYNE 283 (388)
T ss_pred hcCCCccccccchhh
Confidence 4566666655553
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=2.4e-08 Score=81.06 Aligned_cols=87 Identities=28% Similarity=0.313 Sum_probs=61.8
Q ss_pred CCCCCCEEECCCCCCcc--CCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCc-hhcCCCCCC
Q 038776 97 NLSFLQKLDLRNNSFTN--EIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIP-SEFGSLSKL 173 (281)
Q Consensus 97 ~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L 173 (281)
....++.+|+.+|.++. .+-..+.++|.|++|+++.|.+...+...-..+.+|++|.+.+..+..... ..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35678899999998874 344456789999999999998873332221356788999998887764322 345677888
Q ss_pred CEEeCcCCcc
Q 038776 174 QFLSTTANNL 183 (281)
Q Consensus 174 ~~L~l~~n~~ 183 (281)
+.|.++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 8888888854
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=9.5e-09 Score=74.10 Aligned_cols=83 Identities=24% Similarity=0.358 Sum_probs=39.6
Q ss_pred CCCCCEEECCCCCCccCCchhc-cCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEE
Q 038776 98 LSFLQKLDLRNNSFTNEIPPQI-GHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL 176 (281)
Q Consensus 98 l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 176 (281)
..+|+..++++|.+. .+|..| .+++.++.|++++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 344455555555555 333322 23345555555555555 44555555555555555555544 444444444444444
Q ss_pred eCcCCcc
Q 038776 177 STTANNL 183 (281)
Q Consensus 177 ~l~~n~~ 183 (281)
+..+|..
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 4444443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.9e-09 Score=86.32 Aligned_cols=176 Identities=22% Similarity=0.242 Sum_probs=86.6
Q ss_pred CCEEECCCCCCcc-CCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC-CCCCCCc-hhcCCCCCCCEEe
Q 038776 101 LQKLDLRNNSFTN-EIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN-HLAGKIP-SEFGSLSKLQFLS 177 (281)
Q Consensus 101 L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n-~~~~~~p-~~~~~l~~L~~L~ 177 (281)
+++||++...++. .+...+..+.+|+.|.+.++++...+...+..-.+|+.|+++.+ .++.... -.+.+++.|+.|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5555555555442 12223344555555555555555444445555555666665553 2221111 1244555566666
Q ss_pred CcCCcccccCCc-cccCC-CCCCeEEcccCCCc--c-cccccCCCCCCCCeEecccCcC-cCCCCccccCCCCCCEEEcc
Q 038776 178 TTANNLTGNIPS-SLGNL-SSLRGLSLSRNGFY--G-SIPDTFGGLKNLVNLSLVVNNL-SGTIPPLIFNISSIQTFDVG 251 (281)
Q Consensus 178 l~~n~~~~~~~~-~l~~l-~~L~~L~l~~n~~~--~-~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~l~~~~~L~~L~l~ 251 (281)
++-|.+...... .+.+. .+|+.|+++|+... . .+..-..++++|.+||+++|.. +...-..+..++-|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 655544321111 11111 34555555555321 0 1111123567777777777643 32233455566777777777
Q ss_pred cCcccccCChhh--hhCCCCCcEEEcccc
Q 038776 252 SNYIEGEMPLDL--GTTLPNLRIFSITGN 278 (281)
Q Consensus 252 ~n~l~~~~p~~~--~~~~~~L~~L~l~~N 278 (281)
.|.. .+|..+ ++..|.|.+||+.++
T Consensus 347 RCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcC--CChHHeeeeccCcceEEEEeccc
Confidence 7753 234332 223677777777654
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=5.1e-09 Score=94.16 Aligned_cols=126 Identities=27% Similarity=0.300 Sum_probs=82.9
Q ss_pred CCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchh-cCCCCCCCEEeC
Q 038776 100 FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSE-FGSLSKLQFLST 178 (281)
Q Consensus 100 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l 178 (281)
.|...++++|.+. .+..++.-++.|+.|+|+.|+++. . ..+..+++|++|||++|.+. .+|.. ...+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 4555666677666 455566677788888888888763 2 26677788888888888877 45542 22333 778888
Q ss_pred cCCcccccCCccccCCCCCCeEEcccCCCccccc-ccCCCCCCCCeEecccCcCc
Q 038776 179 TANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~ 232 (281)
++|.++. ...+.++++|+.||+++|-+.+.-. ..+..+..|+.|+|.+|.+.
T Consensus 240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8887762 2456677788888888887654211 12334567777777777765
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=1.4e-06 Score=50.79 Aligned_cols=37 Identities=32% Similarity=0.599 Sum_probs=26.8
Q ss_pred CCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776 219 KNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256 (281)
Q Consensus 219 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 256 (281)
++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36778888888887 56666778888888888888777
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.1e-08 Score=83.12 Aligned_cols=156 Identities=21% Similarity=0.137 Sum_probs=65.5
Q ss_pred cCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccC--CccCcCCCCCcEEEcccCCCCCCCchh-cC-CCC
Q 038776 96 GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEI--PASISNCSNLLVVSLALNHLAGKIPSE-FG-SLS 171 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--p~~l~~l~~L~~L~l~~n~~~~~~p~~-~~-~l~ 171 (281)
..+..|+.|.+.++++.+.+...+++-.+|+.|+++.+.--... ---+.+++.|..|+++++......... +. --+
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 34455555555555555444445555555555555544211011 011334555555555555443211111 11 113
Q ss_pred CCCEEeCcCCccc---ccCCccccCCCCCCeEEcccCC-CcccccccCCCCCCCCeEecccCcCcCCCCc---cccCCCC
Q 038776 172 KLQFLSTTANNLT---GNIPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPP---LIFNISS 244 (281)
Q Consensus 172 ~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~l~~~~~ 244 (281)
+|..|+++++.-. .++..-...+++|.+||+++|. ++...-..+..++.|+++.++.|..- +|. .+...+.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~ps 364 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPS 364 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcc
Confidence 4455555544321 1111122344555555555543 22222223334555555555554331 221 2334455
Q ss_pred CCEEEcccC
Q 038776 245 IQTFDVGSN 253 (281)
Q Consensus 245 L~~L~l~~n 253 (281)
|.+|++.++
T Consensus 365 l~yLdv~g~ 373 (419)
T KOG2120|consen 365 LVYLDVFGC 373 (419)
T ss_pred eEEEEeccc
Confidence 555555443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=2.9e-07 Score=74.92 Aligned_cols=184 Identities=15% Similarity=0.126 Sum_probs=106.8
Q ss_pred CcEEEEEcCCCCcce--ecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccc-cCCccCcCCCCCcE
Q 038776 75 QRVTILDLQNLKLAG--TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG-EIPASISNCSNLLV 151 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~ 151 (281)
.+++.+|+.+|.+++ .+...+.++++|+.|++++|++...+-..-..+++|++|.|.+..+.- .....+..+|.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 578889999998873 344556789999999999999874332211367789999999887642 23445678899999
Q ss_pred EEcccCCCCCCC--chhcCC-CCCCCEEeCcCCcccc--cCCccccCCCCCCeEEcccCCCccc-ccccCCCCCCCCeEe
Q 038776 152 VSLALNHLAGKI--PSEFGS-LSKLQFLSTTANNLTG--NIPSSLGNLSSLRGLSLSRNGFYGS-IPDTFGGLKNLVNLS 225 (281)
Q Consensus 152 L~l~~n~~~~~~--p~~~~~-l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~ 225 (281)
|+++.|.+.-.. ...... -+.++++....|...- ..-.....++++..+-+..|++... .......++.+.-|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 999988443110 001111 1234444444443210 0001112245566666666655421 122233445555666
Q ss_pred cccCcCcC-CCCccccCCCCCCEEEcccCccccc
Q 038776 226 LVVNNLSG-TIPPLIFNISSIQTFDVGSNYIEGE 258 (281)
Q Consensus 226 l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~ 258 (281)
++.+++.. .-.+.+..++.|..|.+.+|++.+.
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 66666642 1224556667777777777766643
No 52
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.18 E-value=3.4e-06 Score=48.98 Aligned_cols=40 Identities=55% Similarity=1.002 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCC--CCCccccceeeC
Q 038776 32 ETDRAALLEFKSKITNDALGVLGSWNDS--IHFCEWYGVTCS 71 (281)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~g~~~~ 71 (281)
+.|+++|++||+.+..++...+.+|..+ .++|.|.|++|.
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 4688999999999986677789999987 799999999994
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=1.7e-07 Score=67.79 Aligned_cols=82 Identities=23% Similarity=0.338 Sum_probs=38.5
Q ss_pred cccEeeccCCcccccCCccCc-CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEc
Q 038776 124 RLQILYLQINSFDGEIPASIS-NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSL 202 (281)
Q Consensus 124 ~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 202 (281)
+|...++++|.+. .+|..|. ..+.++.+++++|.+. .+|..+..++.|+.|+++.|++. ..|..+..+.++..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3444455555544 3444332 2234555555555554 44444555555555555555554 33444444444445554
Q ss_pred ccCCCc
Q 038776 203 SRNGFY 208 (281)
Q Consensus 203 ~~n~~~ 208 (281)
.+|.+.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 444443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=3e-06 Score=49.39 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=18.6
Q ss_pred CCCeEEcccCCCcccccccCCCCCCCCeEecccCcCc
Q 038776 196 SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 196 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 232 (281)
+|++|++++|+++ .+|..++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=2e-05 Score=68.21 Aligned_cols=132 Identities=18% Similarity=0.266 Sum_probs=77.3
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCC-cccccCCccCcCCCCCcEEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQIN-SFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~p~~l~~l~~L~~L~ 153 (281)
..++.|++++|.+. .+|. +. .+|+.|.++++.-...+|..+ .++|++|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence 45678888888766 4452 22 358888888754434566544 357888888887 443 4553 466777
Q ss_pred cccCCCC--CCCchhcCCCCCCCEEeCcCCccc--ccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccC
Q 038776 154 LALNHLA--GKIPSEFGSLSKLQFLSTTANNLT--GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVN 229 (281)
Q Consensus 154 l~~n~~~--~~~p~~~~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 229 (281)
+..+... +.+|. +|+.|.+.++... ...|.. -.++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 7655432 13333 4556666432211 011111 1257888888888765 3443332 57888888765
Q ss_pred c
Q 038776 230 N 230 (281)
Q Consensus 230 ~ 230 (281)
.
T Consensus 188 ~ 188 (426)
T PRK15386 188 Q 188 (426)
T ss_pred c
Confidence 3
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=1.7e-06 Score=80.41 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=13.9
Q ss_pred CCCCCEEEcccCcccccCChhhhhCCCCCc
Q 038776 242 ISSIQTFDVGSNYIEGEMPLDLGTTLPNLR 271 (281)
Q Consensus 242 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~ 271 (281)
+|+|+.||+++..+.+.+-+.+...-|+|+
T Consensus 249 LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred CccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 445555555555555444443333333333
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=3.4e-06 Score=78.45 Aligned_cols=133 Identities=20% Similarity=0.332 Sum_probs=87.5
Q ss_pred CCCcEEEcccCCCC-CCCchhcC-CCCCCCEEeCcCCccccc-CCccccCCCCCCeEEcccCCCcccccccCCCCCCCCe
Q 038776 147 SNLLVVSLALNHLA-GKIPSEFG-SLSKLQFLSTTANNLTGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVN 223 (281)
Q Consensus 147 ~~L~~L~l~~n~~~-~~~p~~~~-~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 223 (281)
.+|++|++++...- ...|..++ .+|+|+.|.+++-.+... +-....++++|..||+++++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46777777764332 22333333 568888888877665422 223345678888888888888633 55778888888
Q ss_pred EecccCcCcC-CCCccccCCCCCCEEEcccCccccc--CCh---hhhhCCCCCcEEEcccccCC
Q 038776 224 LSLVVNNLSG-TIPPLIFNISSIQTFDVGSNYIEGE--MPL---DLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 224 L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~--~p~---~~~~~~~~L~~L~l~~N~l~ 281 (281)
|.+.+=.+.. ..-..+.++++|+.||++....... +.. +....+|+|+.||.|++.++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 8887776653 2224667889999999998754421 111 12334899999999998763
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=1.7e-06 Score=69.68 Aligned_cols=187 Identities=24% Similarity=0.184 Sum_probs=127.3
Q ss_pred ccCcCCCCCCEEECCCCCCccCCch----hccCCCcccEeeccCCccccc----CC---------ccCcCCCCCcEEEcc
Q 038776 93 PHIGNLSFLQKLDLRNNSFTNEIPP----QIGHLRRLQILYLQINSFDGE----IP---------ASISNCSNLLVVSLA 155 (281)
Q Consensus 93 ~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~----~p---------~~l~~l~~L~~L~l~ 155 (281)
+.+.++++|+..++|.|.+....|. .+++-..|.+|.+++|.+... +. ....+-|.|++.+..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3466889999999999988755553 456778899999999977521 11 123456889999999
Q ss_pred cCCCCCCCchh-----cCCCCCCCEEeCcCCcccccCC-----ccccCCCCCCeEEcccCCCccc----ccccCCCCCCC
Q 038776 156 LNHLAGKIPSE-----FGSLSKLQFLSTTANNLTGNIP-----SSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNL 221 (281)
Q Consensus 156 ~n~~~~~~p~~-----~~~l~~L~~L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L 221 (281)
.|++. ..+.. +..-.+|+.+.+..|.+.-... ..+..+.+|+.|++++|.++-. +...+..++.|
T Consensus 166 rNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 99887 33322 3333688999999998762211 1234668999999999988622 33455667889
Q ss_pred CeEecccCcCcCCCCcc----cc--CCCCCCEEEcccCcccccCChh------hhhCCCCCcEEEcccccC
Q 038776 222 VNLSLVVNNLSGTIPPL----IF--NISSIQTFDVGSNYIEGEMPLD------LGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 222 ~~L~l~~n~~~~~~~~~----l~--~~~~L~~L~l~~n~l~~~~p~~------~~~~~~~L~~L~l~~N~l 280 (281)
+.|.+.+|-++..-... +. ..++|..|..++|.+.+.+... ....+|-|..|.+.+|+|
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 99999999876432221 11 2478888989998766533322 223467777777777776
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=5.6e-05 Score=65.53 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=88.5
Q ss_pred CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 174 (281)
+..+.+++.|++++|.+. .+|. -..+|+.|.+++|.-...+|..+ .++|++|++++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 455688999999999887 6662 23469999998865444667654 36899999999833335554 467
Q ss_pred EEeCcCCccc--ccCCccccCCCCCCeEEcccCCC-cc-cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEc
Q 038776 175 FLSTTANNLT--GNIPSSLGNLSSLRGLSLSRNGF-YG-SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDV 250 (281)
Q Consensus 175 ~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~-~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 250 (281)
.|++..+... +.+| ++|+.|.+.++.. .. .+|.. -.++|+.|++++|... .+|..+. .+|++|++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 7777665443 1233 3566777654321 11 11211 1268999999998866 3454433 57999999
Q ss_pred ccCc
Q 038776 251 GSNY 254 (281)
Q Consensus 251 ~~n~ 254 (281)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8763
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=3.4e-05 Score=59.61 Aligned_cols=103 Identities=25% Similarity=0.267 Sum_probs=60.6
Q ss_pred CCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCC-chhcCCCCCCCEEeC
Q 038776 100 FLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKI-PSEFGSLSKLQFLST 178 (281)
Q Consensus 100 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l 178 (281)
....+|+++|.+. -.+.|..++.|.+|.+++|+++..-|.--.-+++|+.|.+.+|.+.... -..+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4466777777765 2233566777777777777777444443344567777777777766211 123556667777777
Q ss_pred cCCccccc---CCccccCCCCCCeEEccc
Q 038776 179 TANNLTGN---IPSSLGNLSSLRGLSLSR 204 (281)
Q Consensus 179 ~~n~~~~~---~~~~l~~l~~L~~L~l~~ 204 (281)
-+|..... --..+..+++|+.||.+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 66665421 012244556666666554
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=0.00013 Score=56.47 Aligned_cols=105 Identities=24% Similarity=0.226 Sum_probs=76.1
Q ss_pred CCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCC-CccccCCCCCCEE
Q 038776 170 LSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI-PPLIFNISSIQTF 248 (281)
Q Consensus 170 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L 248 (281)
......+++++|.+.. ...+..++.|.+|.+..|+++..-|.--.-+++|..|.+.+|.+...- -..+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3467888999998852 245667899999999999998655555555688999999999887311 1345567899999
Q ss_pred EcccCcccccCC---hhhhhCCCCCcEEEccc
Q 038776 249 DVGSNYIEGEMP---LDLGTTLPNLRIFSITG 277 (281)
Q Consensus 249 ~l~~n~l~~~~p---~~~~~~~~~L~~L~l~~ 277 (281)
.+-+|+++..-- .-+.. +|+|+.||.+.
T Consensus 119 tll~Npv~~k~~YR~yvl~k-lp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYK-LPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEe-cCcceEeehhh
Confidence 999998873211 11333 89999998764
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00081 Score=48.99 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=23.0
Q ss_pred hccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCc
Q 038776 118 QIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTT 179 (281)
Q Consensus 118 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 179 (281)
+|.++++|+.+.+.. .+...-...+.++++|+.+.+..+ +.......+..+++++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 455555666666553 233233334555555666655543 332222234444445555553
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.0012 Score=48.11 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=19.7
Q ss_pred CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA 155 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 155 (281)
|.++.+|+.+.+.. .+......+|..+++|+.+.+..+ +...-...+.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44444455554442 232222334444444555554442 221222234444445555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=0.00016 Score=58.18 Aligned_cols=84 Identities=25% Similarity=0.297 Sum_probs=43.9
Q ss_pred CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC--cccccCCccccCCCCCCeEEcccCCCcccccccC---CCCC
Q 038776 145 NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN--NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF---GGLK 219 (281)
Q Consensus 145 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---~~l~ 219 (281)
.+..|+.+++.+..++ .-..+-.+++|+.|.++.| ...+.++.....+++|+++++++|++.. ++++ ..+.
T Consensus 41 ~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 3445555555444443 1123445667777777777 4444444444445677777777776652 2222 2344
Q ss_pred CCCeEecccCcCc
Q 038776 220 NLVNLSLVVNNLS 232 (281)
Q Consensus 220 ~L~~L~l~~n~~~ 232 (281)
+|..|++.+|..+
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 5555566555444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00012 Score=58.86 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=17.4
Q ss_pred CcCCCCCCEEECCCC--CCccCCchhccCCCcccEeeccCCcc
Q 038776 95 IGNLSFLQKLDLRNN--SFTNEIPPQIGHLRRLQILYLQINSF 135 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~n~~ 135 (281)
+..+++|+.|.++.| .+.+.++-....+++|++|++++|.+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 334444455555544 33322332223334444444444444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=1.3e-05 Score=64.89 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=38.7
Q ss_pred CCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccc-cccCCCCCCCCeEe
Q 038776 147 SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSI-PDTFGGLKNLVNLS 225 (281)
Q Consensus 147 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~ 225 (281)
.+.+.|++-++.+... .....++.|+.|.|+.|+++.. ..+..+++|++|+|..|.+.+.- -..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3444455555544311 1233455555555555555422 22445555555555555554211 12234455555555
Q ss_pred cccCcCcC
Q 038776 226 LVVNNLSG 233 (281)
Q Consensus 226 l~~n~~~~ 233 (281)
|..|.-.+
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 55554443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=6.3e-05 Score=61.08 Aligned_cols=100 Identities=25% Similarity=0.226 Sum_probs=66.5
Q ss_pred CCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCccccc-CCccccCCCCCCeE
Q 038776 122 LRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN-IPSSLGNLSSLRGL 200 (281)
Q Consensus 122 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L 200 (281)
+.+.+.|+..+|.+... .....++.|++|.|+-|+++.. ..+..+++|++|+|..|.+.+. ....+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45566778888877632 2234678888888888888632 3366788888888888877632 12346677888888
Q ss_pred EcccCCCccccccc-----CCCCCCCCeEe
Q 038776 201 SLSRNGFYGSIPDT-----FGGLKNLVNLS 225 (281)
Q Consensus 201 ~l~~n~~~~~~~~~-----~~~l~~L~~L~ 225 (281)
-|..|.-.|.-+.. +..+++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888776554432 23456666665
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.98 E-value=3.7e-05 Score=68.65 Aligned_cols=87 Identities=28% Similarity=0.396 Sum_probs=39.3
Q ss_pred CCCCCeEEcccCCCccc----ccccCCCCCC-CCeEecccCcCcCC----CCccccCC-CCCCEEEcccCcccccCChhh
Q 038776 194 LSSLRGLSLSRNGFYGS----IPDTFGGLKN-LVNLSLVVNNLSGT----IPPLIFNI-SSIQTFDVGSNYIEGEMPLDL 263 (281)
Q Consensus 194 l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~l~~n~~~~~----~~~~l~~~-~~L~~L~l~~n~l~~~~p~~~ 263 (281)
..++++|++.+|.++.. +...+...++ +..+++..|++.+. +...+... ..++.++++.|.+++.....+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44555555555554421 1112222333 44455555555422 12223333 445566666666654433332
Q ss_pred hh---CCCCCcEEEcccccC
Q 038776 264 GT---TLPNLRIFSITGNQF 280 (281)
Q Consensus 264 ~~---~~~~L~~L~l~~N~l 280 (281)
.+ .++.++.+.+++|++
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhhhHHHHHhhcccCcc
Confidence 22 244556666665554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.92 E-value=0.0039 Score=30.16 Aligned_cols=18 Identities=39% Similarity=0.532 Sum_probs=8.6
Q ss_pred ccEeeccCCcccccCCccC
Q 038776 125 LQILYLQINSFDGEIPASI 143 (281)
Q Consensus 125 L~~L~l~~n~~~~~~p~~l 143 (281)
|++|++++|+++ .+|+.+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555544 444433
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.44 E-value=0.0014 Score=58.94 Aligned_cols=173 Identities=20% Similarity=0.105 Sum_probs=92.4
Q ss_pred CCCCCEEECCCCCCccC--CchhccCCCcccEeeccCC-cccccCC----ccCcCCCCCcEEEcccCC-CCCCCchhcC-
Q 038776 98 LSFLQKLDLRNNSFTNE--IPPQIGHLRRLQILYLQIN-SFDGEIP----ASISNCSNLLVVSLALNH-LAGKIPSEFG- 168 (281)
Q Consensus 98 l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n-~~~~~~p----~~l~~l~~L~~L~l~~n~-~~~~~p~~~~- 168 (281)
.+.|+.+.+..+.-... +-.....+++|+.|+++++ ......+ .....+++|+.++++++. ++...-..++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56777777776533212 2334557788888888763 2111111 223445778888888877 5544333333
Q ss_pred CCCCCCEEeCcCCc-ccccCC-ccccCCCCCCeEEcccCCCcc--cccccCCCCCCCCeEecccCc----Cc--------
Q 038776 169 SLSKLQFLSTTANN-LTGNIP-SSLGNLSSLRGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNN----LS-------- 232 (281)
Q Consensus 169 ~l~~L~~L~l~~n~-~~~~~~-~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~----~~-------- 232 (281)
.+++|+.|.+.++. ++...- .....++.|++|+++++.... .+......+++++.+.+.... ++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 37788888877666 443322 223456778888888776531 122222234444443322221 11
Q ss_pred -----CCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCC
Q 038776 233 -----GTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNL 270 (281)
Q Consensus 233 -----~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L 270 (281)
......+..+++++.+.+.++......-..+..++++|
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 01122345677888888888774432223444556666
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.38 E-value=0.0059 Score=29.54 Aligned_cols=18 Identities=44% Similarity=0.626 Sum_probs=9.6
Q ss_pred CcEEEcccCCCCCCCchhc
Q 038776 149 LLVVSLALNHLAGKIPSEF 167 (281)
Q Consensus 149 L~~L~l~~n~~~~~~p~~~ 167 (281)
|++|++++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 555555555555 444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.40 E-value=0.028 Score=25.22 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=4.6
Q ss_pred CCCEEEcccCccc
Q 038776 244 SIQTFDVGSNYIE 256 (281)
Q Consensus 244 ~L~~L~l~~n~l~ 256 (281)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.39 E-value=0.0012 Score=52.56 Aligned_cols=84 Identities=23% Similarity=0.234 Sum_probs=71.0
Q ss_pred CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776 74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 153 (281)
+.+++.||++.+.+. .+...|.-+..+..|+++.|.+. ..|..+..+..+..+++..|+.+ ..|.+++..+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 478899999998876 34455777788889999999887 78888888888999999999888 8899999999999999
Q ss_pred cccCCCC
Q 038776 154 LALNHLA 160 (281)
Q Consensus 154 l~~n~~~ 160 (281)
...+.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9888765
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.30 E-value=0.015 Score=52.22 Aligned_cols=129 Identities=20% Similarity=0.099 Sum_probs=57.1
Q ss_pred CCCCcEEEcccCCCCCC--CchhcCCCCCCCEEeCcCC-cccccC----CccccCCCCCCeEEcccCC-CcccccccCC-
Q 038776 146 CSNLLVVSLALNHLAGK--IPSEFGSLSKLQFLSTTAN-NLTGNI----PSSLGNLSSLRGLSLSRNG-FYGSIPDTFG- 216 (281)
Q Consensus 146 l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n-~~~~~~----~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~- 216 (281)
.+.|+.+.+..+.-... .-.....++.|+.|+++++ ...... ......+.+|+.++++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666555432212 2233445666666666652 111111 1122233556666666655 3332222222
Q ss_pred CCCCCCeEecccCc-CcCC-CCccccCCCCCCEEEcccCccc-ccCChhhhhCCCCCcEEE
Q 038776 217 GLKNLVNLSLVVNN-LSGT-IPPLIFNISSIQTFDVGSNYIE-GEMPLDLGTTLPNLRIFS 274 (281)
Q Consensus 217 ~l~~L~~L~l~~n~-~~~~-~~~~l~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~ 274 (281)
.+++|+.|.+.++. ++.. +......++.|++|+++++... +..-..+...+++++.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 25566666655554 3321 2223334555666666665332 221222233355555443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.28 E-value=0.0001 Score=65.85 Aligned_cols=184 Identities=22% Similarity=0.270 Sum_probs=125.3
Q ss_pred EEEEEcCCCCccee----cCccCcCCCCCCEEECCCCCCccCCc----hhccCC-CcccEeeccCCcccc----cCCccC
Q 038776 77 VTILDLQNLKLAGT----LPPHIGNLSFLQKLDLRNNSFTNEIP----PQIGHL-RRLQILYLQINSFDG----EIPASI 143 (281)
Q Consensus 77 l~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l-~~L~~L~l~~n~~~~----~~p~~l 143 (281)
+..+.+.+|.+... +...+....+|..|++++|.+.+.-- ..+... ..+++|++..|.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56677888877643 33456677889999999998873221 122232 567788888888764 234556
Q ss_pred cCCCCCcEEEcccCCCCC----CCchhc----CCCCCCCEEeCcCCccccc----CCccccCCCC-CCeEEcccCCCccc
Q 038776 144 SNCSNLLVVSLALNHLAG----KIPSEF----GSLSKLQFLSTTANNLTGN----IPSSLGNLSS-LRGLSLSRNGFYGS 210 (281)
Q Consensus 144 ~~l~~L~~L~l~~n~~~~----~~p~~~----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~-L~~L~l~~n~~~~~ 210 (281)
.....++.++++.|.+.. .++..+ ....++++|.+.+|.++.. ....+...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 667889999999998752 122233 3577899999999887632 1123344455 77799999988643
Q ss_pred ----ccccCCCC-CCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCC
Q 038776 211 ----IPDTFGGL-KNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMP 260 (281)
Q Consensus 211 ----~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p 260 (281)
..+.+..+ ..++.+++..|.++.. +...+...+.++.+.+.+|.+.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 23344555 7889999999999854 33455667789999999999886443
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.81 E-value=0.062 Score=26.95 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=14.0
Q ss_pred CCCCEEEcccCcccccCChhhh
Q 038776 243 SSIQTFDVGSNYIEGEMPLDLG 264 (281)
Q Consensus 243 ~~L~~L~l~~n~l~~~~p~~~~ 264 (281)
++|++|++++|.+. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 46677777777776 6666554
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.81 E-value=0.062 Score=26.95 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=14.0
Q ss_pred CCCCEEEcccCcccccCChhhh
Q 038776 243 SSIQTFDVGSNYIEGEMPLDLG 264 (281)
Q Consensus 243 ~~L~~L~l~~n~l~~~~p~~~~ 264 (281)
++|++|++++|.+. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 46677777777776 6666554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.56 E-value=0.0012 Score=52.58 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=56.9
Q ss_pred CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 174 (281)
+...+..+.||++.|++. ..-..|+.+..+..|+++.|.+. .+|..++....++.+++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 445566677777777655 34445556666677777777666 66766666666667766666655 6666777777777
Q ss_pred EEeCcCCccc
Q 038776 175 FLSTTANNLT 184 (281)
Q Consensus 175 ~L~l~~n~~~ 184 (281)
+++...|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777666554
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.57 E-value=0.047 Score=26.83 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=10.9
Q ss_pred CCCCEEEcccCcccccCChh
Q 038776 243 SSIQTFDVGSNYIEGEMPLD 262 (281)
Q Consensus 243 ~~L~~L~l~~n~l~~~~p~~ 262 (281)
++|++|++++|.+++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45667777777766554443
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=0.037 Score=43.20 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=59.1
Q ss_pred CCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc-cccccC-CCCCCCCeEecccC-cCcCCCCccccCCCCC
Q 038776 169 SLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG-SIPDTF-GGLKNLVNLSLVVN-NLSGTIPPLIFNISSI 245 (281)
Q Consensus 169 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~-~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L 245 (281)
.-..++.++.++..+....-..+.+++.++.|.+.+|.--+ .--+.+ +..++|+.|++++| .++..--..+..+++|
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 33457888888888887666777788888888887775321 111111 23578899999876 4665555677778888
Q ss_pred CEEEcccCcc
Q 038776 246 QTFDVGSNYI 255 (281)
Q Consensus 246 ~~L~l~~n~l 255 (281)
+.|++.+-+.
T Consensus 179 r~L~l~~l~~ 188 (221)
T KOG3864|consen 179 RRLHLYDLPY 188 (221)
T ss_pred HHHHhcCchh
Confidence 8888776543
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.10 E-value=0.24 Score=43.07 Aligned_cols=84 Identities=20% Similarity=0.124 Sum_probs=35.1
Q ss_pred CCCCcEEEcccCCCCCCCc-hh-cCCCCCCCEEeCcCCccccc-CCccc-cCCCCCCeEEcccCCCc--ccccccCCCCC
Q 038776 146 CSNLLVVSLALNHLAGKIP-SE-FGSLSKLQFLSTTANNLTGN-IPSSL-GNLSSLRGLSLSRNGFY--GSIPDTFGGLK 219 (281)
Q Consensus 146 l~~L~~L~l~~n~~~~~~p-~~-~~~l~~L~~L~l~~n~~~~~-~~~~l-~~l~~L~~L~l~~n~~~--~~~~~~~~~l~ 219 (281)
+..|++++.+++...+..+ .. ..+..+|+.+.+..|+.-+. --..+ .+.+.|+.+++.++... +++...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4556666665543321111 11 23445666666665542111 11111 13345555555554331 11222223445
Q ss_pred CCCeEecccC
Q 038776 220 NLVNLSLVVN 229 (281)
Q Consensus 220 ~L~~L~l~~n 229 (281)
.|+.+.++++
T Consensus 373 ~lr~lslshc 382 (483)
T KOG4341|consen 373 RLRVLSLSHC 382 (483)
T ss_pred hhccCChhhh
Confidence 5555555544
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.72 E-value=0.71 Score=23.24 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=7.5
Q ss_pred CCCcEEEcccccC
Q 038776 268 PNLRIFSITGNQF 280 (281)
Q Consensus 268 ~~L~~L~l~~N~l 280 (281)
.+|+.|++++|++
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4556666666654
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.35 E-value=0.59 Score=40.75 Aligned_cols=13 Identities=31% Similarity=0.207 Sum_probs=6.8
Q ss_pred CCCCCeEEcccCC
Q 038776 194 LSSLRGLSLSRNG 206 (281)
Q Consensus 194 l~~L~~L~l~~n~ 206 (281)
..+|+.+-+.+++
T Consensus 319 ~~~L~~l~l~~c~ 331 (483)
T KOG4341|consen 319 CHNLQVLELSGCQ 331 (483)
T ss_pred CCceEEEeccccc
Confidence 3455555555554
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.15 E-value=0.72 Score=23.57 Aligned_cols=13 Identities=31% Similarity=0.743 Sum_probs=8.0
Q ss_pred CCCcEEEcccccC
Q 038776 268 PNLRIFSITGNQF 280 (281)
Q Consensus 268 ~~L~~L~l~~N~l 280 (281)
++|+.|||++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3566666666655
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.77 E-value=0.36 Score=37.83 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=58.6
Q ss_pred CCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC-CCccc-cCCCCCCEEEcccC-cccccCChhhhhCCCCCc
Q 038776 195 SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT-IPPLI-FNISSIQTFDVGSN-YIEGEMPLDLGTTLPNLR 271 (281)
Q Consensus 195 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l-~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~~L~ 271 (281)
..++.++-+++.+....-+.+..++.++.|.+.++.--+. --..+ +..++|+.|++++| .|++.....+.+ +++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 3567888888888766666778888899998888753221 00111 14578999999998 688666666666 89999
Q ss_pred EEEccc
Q 038776 272 IFSITG 277 (281)
Q Consensus 272 ~L~l~~ 277 (281)
.|++.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 888764
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.60 E-value=1.2 Score=22.34 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=12.9
Q ss_pred CCCCEEEcccCcccccCCh
Q 038776 243 SSIQTFDVGSNYIEGEMPL 261 (281)
Q Consensus 243 ~~L~~L~l~~n~l~~~~p~ 261 (281)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35778888888877 6664
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.99 E-value=1.7 Score=39.37 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=6.2
Q ss_pred CCEEEcccCccc
Q 038776 245 IQTFDVGSNYIE 256 (281)
Q Consensus 245 L~~L~l~~n~l~ 256 (281)
|++|-+.||++.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 445555555554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.34 E-value=3.8 Score=37.19 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=39.9
Q ss_pred CCCCCCeEecccCcCcC--CCCccccCCCCCCEEEcccC--cccccCChhhhh-CCCCCcEEEcccccC
Q 038776 217 GLKNLVNLSLVVNNLSG--TIPPLIFNISSIQTFDVGSN--YIEGEMPLDLGT-TLPNLRIFSITGNQF 280 (281)
Q Consensus 217 ~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n--~l~~~~p~~~~~-~~~~L~~L~l~~N~l 280 (281)
+.+.+..+.+++|++.. .+.......++|+.|+|++| .+.. ..++.+ ....|++|-+.||++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcc
Confidence 44677778888887752 12233345688999999999 4432 122222 256688888899886
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=59.26 E-value=6.6 Score=19.38 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=9.3
Q ss_pred CCCCcEEEccccc
Q 038776 267 LPNLRIFSITGNQ 279 (281)
Q Consensus 267 ~~~L~~L~l~~N~ 279 (281)
+++|+.|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4677888887774
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=55.39 E-value=21 Score=32.05 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=10.5
Q ss_pred CCCEEEcccCcccccCC
Q 038776 244 SIQTFDVGSNYIEGEMP 260 (281)
Q Consensus 244 ~L~~L~l~~n~l~~~~p 260 (281)
.+++|.+.+|.+.|+.-
T Consensus 355 R~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGG 371 (553)
T ss_pred eeeEeeccccccccccc
Confidence 36677777776665443
No 91
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=39.57 E-value=46 Score=20.03 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=16.3
Q ss_pred CchHHHHHHHHHHHHHHH
Q 038776 1 MSWLIFSLQALAFCFSLH 18 (281)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (281)
|-|...+.++++-|+...
T Consensus 1 mkwltsfgra~iscyksl 18 (65)
T PF06336_consen 1 MKWLTSFGRAFISCYKSL 18 (65)
T ss_pred CchHHHHhHHHHHHHHHH
Confidence 889999999999998865
Done!