Query 038776
Match_columns 281
No_of_seqs 244 out of 3699
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 04:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-38 6.1E-43 268.6 18.6 248 29-280 2-280 (313)
2 4fcg_A Uncharacterized protein 100.0 4.4E-35 1.5E-39 249.3 13.6 247 28-280 22-289 (328)
3 4eco_A Uncharacterized protein 100.0 3.9E-35 1.3E-39 270.3 13.8 244 32-281 29-390 (636)
4 3rgz_A Protein brassinosteroid 100.0 7.5E-34 2.6E-38 267.1 18.1 246 25-280 4-281 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 3.7E-33 1.3E-37 262.8 15.0 241 29-281 265-632 (876)
6 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-31 9.6E-36 224.5 12.8 202 75-279 76-302 (313)
7 3rgz_A Protein brassinosteroid 100.0 1.7E-30 5.9E-35 244.3 18.3 205 75-280 442-716 (768)
8 1ozn_A Reticulon 4 receptor; N 100.0 3.7E-29 1.3E-33 208.7 21.2 206 75-281 32-238 (285)
9 2o6q_A Variable lymphocyte rec 100.0 4.7E-29 1.6E-33 206.5 21.5 216 61-281 3-218 (270)
10 4fcg_A Uncharacterized protein 100.0 4.3E-29 1.5E-33 212.4 17.1 201 75-280 104-313 (328)
11 2z66_A Variable lymphocyte rec 100.0 2.2E-28 7.7E-33 205.9 17.2 205 75-280 28-260 (306)
12 3zyi_A Leucine-rich repeat-con 100.0 1.4E-27 4.8E-32 211.6 20.8 203 75-280 75-302 (452)
13 2z62_A TOLL-like receptor 4, v 100.0 2.2E-27 7.6E-32 197.0 17.7 205 75-281 28-237 (276)
14 3zyj_A Leucine-rich repeat-con 100.0 4.9E-27 1.7E-31 207.5 20.7 203 75-280 64-291 (440)
15 3v47_A TOLL-like receptor 5B a 100.0 4.1E-27 1.4E-31 208.6 19.3 68 212-280 292-359 (455)
16 2z66_A Variable lymphocyte rec 100.0 1.2E-27 4E-32 201.5 14.9 184 75-259 78-264 (306)
17 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-26 5.5E-31 196.8 21.5 215 62-281 32-277 (332)
18 3v47_A TOLL-like receptor 5B a 99.9 5.6E-27 1.9E-31 207.8 18.6 113 167-280 295-407 (455)
19 1p9a_G Platelet glycoprotein I 99.9 2.3E-26 7.8E-31 192.2 20.7 199 75-281 10-208 (290)
20 1ozn_A Reticulon 4 receptor; N 99.9 3.1E-26 1.1E-30 190.9 21.3 200 78-281 14-214 (285)
21 1xku_A Decorin; proteoglycan, 99.9 4.3E-26 1.5E-30 194.0 21.7 215 62-281 30-276 (330)
22 3zyj_A Leucine-rich repeat-con 99.9 1.6E-26 5.6E-31 204.1 19.5 180 75-256 88-292 (440)
23 3zyi_A Leucine-rich repeat-con 99.9 2.3E-26 7.9E-31 203.8 19.6 182 74-257 98-304 (452)
24 3oja_B Anopheles plasmodium-re 99.9 2.2E-26 7.5E-31 210.7 19.7 203 75-280 75-336 (597)
25 2z80_A TOLL-like receptor 2, v 99.9 1.9E-27 6.6E-32 204.2 11.8 205 75-281 52-314 (353)
26 2id5_A Lingo-1, leucine rich r 99.9 2.2E-26 7.5E-31 205.2 18.4 206 75-281 32-261 (477)
27 3o6n_A APL1; leucine-rich repe 99.9 8.3E-26 2.8E-30 196.5 20.0 202 75-280 69-330 (390)
28 1wwl_A Monocyte differentiatio 99.9 4.4E-27 1.5E-31 198.7 10.5 200 75-281 95-309 (312)
29 2z80_A TOLL-like receptor 2, v 99.9 5.1E-27 1.8E-31 201.5 10.9 185 74-260 75-318 (353)
30 2id5_A Lingo-1, leucine rich r 99.9 7.6E-26 2.6E-30 201.8 18.7 206 75-281 56-285 (477)
31 3o6n_A APL1; leucine-rich repe 99.9 4.1E-26 1.4E-30 198.4 16.4 134 75-209 45-179 (390)
32 1xku_A Decorin; proteoglycan, 99.9 1E-25 3.4E-30 191.7 18.4 203 74-281 75-306 (330)
33 3m19_A Variable lymphocyte rec 99.9 2.3E-25 7.7E-30 182.4 18.7 192 61-258 3-194 (251)
34 3vq2_A TLR4, TOLL-like recepto 99.9 4.5E-26 1.5E-30 208.9 15.8 204 75-281 350-558 (606)
35 3t6q_A CD180 antigen; protein- 99.9 1E-25 3.6E-30 206.5 18.1 204 75-280 350-559 (606)
36 4eco_A Uncharacterized protein 99.9 9.7E-27 3.3E-31 214.4 10.9 203 74-281 248-470 (636)
37 3t6q_A CD180 antigen; protein- 99.9 6.2E-25 2.1E-29 201.3 20.3 204 76-281 279-489 (606)
38 3rfs_A Internalin B, repeat mo 99.9 4.2E-25 1.4E-29 182.9 17.1 194 75-280 41-234 (272)
39 2o6q_A Variable lymphocyte rec 99.9 1.8E-24 6.2E-29 178.9 20.7 184 75-258 37-220 (270)
40 3vq2_A TLR4, TOLL-like recepto 99.9 3E-25 1E-29 203.5 16.6 203 75-281 328-534 (606)
41 3m19_A Variable lymphocyte rec 99.9 2.2E-24 7.5E-29 176.5 19.5 179 99-281 14-192 (251)
42 4glp_A Monocyte differentiatio 99.9 1.2E-25 4E-30 189.7 12.2 200 75-281 91-307 (310)
43 1ziw_A TOLL-like receptor 3; i 99.9 2.4E-24 8.4E-29 199.9 21.8 205 76-280 382-621 (680)
44 2z81_A CD282 antigen, TOLL-lik 99.9 4.8E-25 1.6E-29 199.8 16.2 205 75-280 26-235 (549)
45 3oja_B Anopheles plasmodium-re 99.9 1.1E-24 3.8E-29 199.4 18.8 136 75-210 51-186 (597)
46 2z7x_B TOLL-like receptor 1, v 99.9 4E-25 1.4E-29 199.1 15.3 83 75-160 45-128 (520)
47 3j0a_A TOLL-like receptor 5; m 99.9 7.9E-25 2.7E-29 207.7 17.3 111 75-185 48-162 (844)
48 3rfs_A Internalin B, repeat mo 99.9 4E-24 1.4E-28 177.0 19.3 194 81-281 25-218 (272)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-24 5.2E-29 197.2 18.3 89 192-280 350-440 (562)
50 2z7x_B TOLL-like receptor 1, v 99.9 8.4E-25 2.9E-29 197.0 16.0 59 75-136 69-128 (520)
51 2ft3_A Biglycan; proteoglycan, 99.9 2.7E-24 9.2E-29 183.0 18.2 204 74-281 77-307 (332)
52 4ecn_A Leucine-rich repeat pro 99.9 2.9E-25 9.8E-30 209.3 13.0 202 74-281 447-710 (876)
53 2xwt_C Thyrotropin receptor; s 99.9 1.7E-24 5.8E-29 175.8 15.8 198 75-279 31-237 (239)
54 1wwl_A Monocyte differentiatio 99.9 4.4E-27 1.5E-31 198.6 0.4 200 77-281 65-287 (312)
55 2z62_A TOLL-like receptor 4, v 99.9 2.3E-24 7.7E-29 178.8 16.3 195 82-281 14-213 (276)
56 1ziw_A TOLL-like receptor 3; i 99.9 7.4E-24 2.5E-28 196.7 21.0 186 75-260 405-626 (680)
57 3oja_A Leucine-rich immune mol 99.9 5.4E-25 1.9E-29 196.6 12.6 200 75-281 34-250 (487)
58 2z63_A TOLL-like receptor 4, v 99.9 1.6E-24 5.6E-29 197.0 15.0 203 75-281 325-531 (570)
59 1p9a_G Platelet glycoprotein I 99.9 9E-24 3.1E-28 176.5 18.2 181 94-281 5-185 (290)
60 1h6u_A Internalin H; cell adhe 99.9 9.5E-24 3.3E-28 177.8 17.8 190 75-281 41-230 (308)
61 3o53_A Protein LRIM1, AGAP0063 99.9 8.2E-25 2.8E-29 185.1 11.1 192 75-281 58-250 (317)
62 2z81_A CD282 antigen, TOLL-lik 99.9 7.7E-25 2.6E-29 198.4 11.6 181 99-280 26-208 (549)
63 3j0a_A TOLL-like receptor 5; m 99.9 7.3E-24 2.5E-28 201.1 18.7 205 75-280 73-374 (844)
64 2z63_A TOLL-like receptor 4, v 99.9 6.3E-24 2.2E-28 193.1 15.8 159 75-233 28-191 (570)
65 3cvr_A Invasion plasmid antige 99.9 1.4E-23 4.8E-28 189.6 17.1 196 55-281 35-243 (571)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-23 5.7E-28 190.3 15.4 158 120-281 350-510 (562)
67 4fmz_A Internalin; leucine ric 99.9 5.8E-23 2E-27 175.7 16.8 174 95-281 173-346 (347)
68 2xwt_C Thyrotropin receptor; s 99.9 1.9E-23 6.4E-28 169.7 12.7 185 90-281 25-218 (239)
69 4fmz_A Internalin; leucine ric 99.9 4.8E-22 1.6E-26 170.0 19.3 195 74-281 109-324 (347)
70 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-23 9.7E-28 175.6 10.9 193 75-281 34-227 (317)
71 1o6v_A Internalin A; bacterial 99.9 3E-22 1E-26 178.0 17.0 189 75-280 199-387 (466)
72 2o6s_A Variable lymphocyte rec 99.9 1.6E-22 5.3E-27 160.8 13.5 182 62-265 6-187 (208)
73 2ca6_A RAN GTPase-activating p 99.9 2.3E-24 7.7E-29 187.2 2.2 208 74-281 59-316 (386)
74 2ast_B S-phase kinase-associat 99.9 7.8E-24 2.7E-28 180.3 5.2 202 75-278 70-282 (336)
75 3oja_A Leucine-rich immune mol 99.9 8.3E-23 2.8E-27 182.4 12.0 194 82-281 17-227 (487)
76 4glp_A Monocyte differentiatio 99.9 6.4E-23 2.2E-27 172.9 10.0 202 75-281 64-285 (310)
77 2o6s_A Variable lymphocyte rec 99.9 6.7E-22 2.3E-26 157.1 15.1 175 75-260 28-202 (208)
78 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-21 1.1E-25 170.8 20.4 182 75-280 64-245 (457)
79 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-21 1.4E-25 170.1 20.3 184 75-281 42-225 (457)
80 1o6v_A Internalin A; bacterial 99.9 3.2E-21 1.1E-25 171.4 18.5 190 75-281 177-366 (466)
81 4g8a_A TOLL-like receptor 4; l 99.9 5.6E-22 1.9E-26 182.1 13.4 201 75-276 52-257 (635)
82 2ast_B S-phase kinase-associat 99.9 6.2E-24 2.1E-28 180.9 -0.1 212 61-279 35-258 (336)
83 1h6u_A Internalin H; cell adhe 99.9 4.1E-21 1.4E-25 161.7 17.0 172 95-281 37-208 (308)
84 2ca6_A RAN GTPase-activating p 99.9 1.4E-23 4.9E-28 182.2 1.8 207 75-281 32-287 (386)
85 1h6t_A Internalin B; cell adhe 99.9 3.4E-21 1.1E-25 160.9 15.5 169 75-257 46-214 (291)
86 4g8a_A TOLL-like receptor 4; l 99.9 4.7E-21 1.6E-25 176.0 17.7 205 75-281 371-580 (635)
87 2xot_A Amphoterin-induced prot 99.9 3.5E-21 1.2E-25 165.7 15.2 175 79-256 22-202 (361)
88 3goz_A Leucine-rich repeat-con 99.9 8.4E-23 2.9E-27 175.9 4.0 205 75-279 22-264 (362)
89 2v9t_B SLIT homolog 2 protein 99.9 9.9E-21 3.4E-25 151.7 15.4 153 102-257 14-166 (220)
90 3e6j_A Variable lymphocyte rec 99.9 2E-20 6.8E-25 150.9 17.2 165 55-235 11-175 (229)
91 2v9t_B SLIT homolog 2 protein 99.9 2E-20 6.9E-25 149.9 16.5 152 79-233 15-166 (220)
92 2v70_A SLIT-2, SLIT homolog 2 99.9 2.1E-20 7.1E-25 149.8 16.1 154 79-235 15-169 (220)
93 3e6j_A Variable lymphocyte rec 99.9 3.5E-20 1.2E-24 149.4 17.1 156 101-260 21-176 (229)
94 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-20 5.7E-25 150.4 14.8 156 102-260 14-170 (220)
95 4ezg_A Putative uncharacterize 99.8 7E-21 2.4E-25 150.0 12.4 152 120-280 41-193 (197)
96 3goz_A Leucine-rich repeat-con 99.8 1.3E-22 4.4E-27 174.7 2.0 205 76-281 52-297 (362)
97 1h6t_A Internalin B; cell adhe 99.8 3.6E-20 1.2E-24 154.7 16.1 171 95-280 42-212 (291)
98 2xot_A Amphoterin-induced prot 99.8 1.6E-20 5.4E-25 161.6 14.1 175 102-280 21-201 (361)
99 1m9s_A Internalin B; cell inva 99.8 1.8E-20 6.1E-25 171.0 14.7 169 75-257 43-211 (605)
100 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-19 4.5E-24 165.5 20.2 183 75-281 81-297 (622)
101 4ezg_A Putative uncharacterize 99.8 1.4E-20 4.8E-25 148.2 11.0 153 96-256 41-194 (197)
102 1jl5_A Outer protein YOPM; leu 99.8 7.9E-21 2.7E-25 168.2 9.4 183 76-280 12-227 (454)
103 3g06_A SSPH2 (leucine-rich rep 99.8 8.3E-20 2.8E-24 166.9 16.3 178 76-280 62-273 (622)
104 4ay9_X Follicle-stimulating ho 99.8 1.6E-20 5.3E-25 161.0 10.9 197 63-261 9-219 (350)
105 1m9s_A Internalin B; cell inva 99.8 6.6E-20 2.2E-24 167.2 14.8 169 97-280 41-209 (605)
106 4ay9_X Follicle-stimulating ho 99.8 5.7E-20 2E-24 157.4 13.0 198 79-281 13-215 (350)
107 4b8c_D Glucose-repressible alc 99.8 1.2E-21 4.1E-26 182.6 1.9 200 32-239 131-336 (727)
108 1xeu_A Internalin C; cellular 99.8 2E-20 6.8E-25 154.0 8.6 168 76-258 20-187 (263)
109 1z7x_W Ribonuclease inhibitor; 99.8 5.4E-22 1.9E-26 175.9 -1.3 181 100-281 200-411 (461)
110 1jl5_A Outer protein YOPM; leu 99.8 1.2E-18 4.2E-23 154.1 19.9 119 76-208 132-250 (454)
111 3cvr_A Invasion plasmid antige 99.8 3E-19 1E-23 161.4 15.9 166 75-265 80-252 (571)
112 1z7x_W Ribonuclease inhibitor; 99.8 2.2E-21 7.4E-26 172.0 -1.1 204 76-280 86-353 (461)
113 1dce_A Protein (RAB geranylger 99.8 4.3E-22 1.5E-26 180.5 -6.9 123 148-275 442-567 (567)
114 1xeu_A Internalin C; cellular 99.8 5.7E-19 1.9E-23 145.3 12.3 147 75-234 41-187 (263)
115 4b8c_D Glucose-repressible alc 99.8 8.7E-20 3E-24 170.1 4.4 181 90-280 215-403 (727)
116 1dce_A Protein (RAB geranylger 99.8 2.5E-21 8.5E-26 175.5 -7.2 178 96-281 346-546 (567)
117 1w8a_A SLIT protein; signaling 99.8 9.1E-18 3.1E-22 131.5 13.9 132 102-236 11-143 (192)
118 1w8a_A SLIT protein; signaling 99.8 1.2E-17 4.2E-22 130.8 13.8 132 78-212 11-143 (192)
119 2ell_A Acidic leucine-rich nuc 99.8 3.7E-18 1.3E-22 130.8 10.4 131 99-231 24-159 (168)
120 2ell_A Acidic leucine-rich nuc 99.8 6.5E-18 2.2E-22 129.4 11.2 137 122-261 23-164 (168)
121 2je0_A Acidic leucine-rich nuc 99.7 7.7E-18 2.6E-22 126.4 9.0 129 147-277 17-149 (149)
122 2wfh_A SLIT homolog 2 protein 99.7 4E-17 1.4E-21 127.9 13.3 128 126-257 13-140 (193)
123 2je0_A Acidic leucine-rich nuc 99.7 8.9E-18 3E-22 126.0 8.6 127 123-251 17-148 (149)
124 2o6r_A Variable lymphocyte rec 99.7 1.8E-16 6.3E-21 122.3 14.7 133 125-260 9-141 (177)
125 2wfh_A SLIT homolog 2 protein 99.7 1.7E-16 5.7E-21 124.4 14.4 128 102-233 13-140 (193)
126 2o6r_A Variable lymphocyte rec 99.7 2.3E-16 7.7E-21 121.8 14.3 133 101-236 9-141 (177)
127 1a9n_A U2A', U2A'; complex (nu 99.7 2.5E-16 8.7E-21 121.5 10.1 132 119-256 15-153 (176)
128 3ogk_B Coronatine-insensitive 99.7 1.3E-18 4.5E-23 158.8 -5.0 205 76-281 294-526 (592)
129 1ds9_A Outer arm dynein; leuci 99.6 5.6E-19 1.9E-23 139.1 -7.8 129 99-232 18-153 (198)
130 1a9n_A U2A', U2A'; complex (nu 99.6 3.3E-16 1.1E-20 120.9 7.7 132 95-232 15-153 (176)
131 3ogk_B Coronatine-insensitive 99.6 3.4E-17 1.2E-21 149.4 1.5 35 242-276 377-411 (592)
132 3sb4_A Hypothetical leucine ri 99.6 4.9E-15 1.7E-19 125.6 12.7 174 98-275 100-328 (329)
133 1ds9_A Outer arm dynein; leuci 99.6 1.1E-18 3.8E-23 137.4 -9.9 155 119-280 14-184 (198)
134 3g39_A Variable lymphocyte rec 99.6 2.3E-14 7.8E-19 109.8 11.9 109 148-259 10-118 (170)
135 2r9u_A Variable lymphocyte rec 99.6 3.8E-14 1.3E-18 109.0 12.0 106 149-257 14-119 (174)
136 2p1m_B Transport inhibitor res 99.5 5E-17 1.7E-21 148.3 -6.6 204 75-280 289-518 (594)
137 3g39_A Variable lymphocyte rec 99.5 9.9E-14 3.4E-18 106.3 12.4 105 101-208 11-115 (170)
138 2r9u_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 106.0 12.8 107 125-234 14-120 (174)
139 3sb4_A Hypothetical leucine ri 99.5 4.8E-14 1.6E-18 119.5 10.2 197 75-281 49-310 (329)
140 2p1m_B Transport inhibitor res 99.5 8.7E-16 3E-20 140.1 -2.4 201 75-276 105-346 (594)
141 3un9_A NLR family member X1; l 99.5 7.6E-16 2.6E-20 132.6 -2.8 167 99-265 72-261 (372)
142 3un9_A NLR family member X1; l 99.5 1.5E-15 5.2E-20 130.7 -3.6 160 122-281 71-252 (372)
143 2ifg_A High affinity nerve gro 99.4 1.4E-12 4.7E-17 111.2 10.7 105 150-257 11-117 (347)
144 4fdw_A Leucine rich hypothetic 99.4 1.3E-11 4.4E-16 107.2 16.9 193 77-279 159-356 (401)
145 2ifg_A High affinity nerve gro 99.3 1.9E-12 6.5E-17 110.4 8.8 105 126-233 11-117 (347)
146 4fdw_A Leucine rich hypothetic 99.3 7E-11 2.4E-15 102.6 16.2 196 75-279 180-381 (401)
147 2ra8_A Uncharacterized protein 99.2 2.5E-12 8.4E-17 110.0 3.6 200 75-279 107-341 (362)
148 2ra8_A Uncharacterized protein 99.2 2.3E-11 8E-16 104.0 5.5 180 99-281 107-320 (362)
149 1io0_A Tropomodulin; LRR prote 98.7 3.1E-09 1.1E-13 82.2 1.7 116 141-256 30-164 (185)
150 3rw6_A Nuclear RNA export fact 98.7 8.2E-11 2.8E-15 95.9 -7.9 64 145-210 168-235 (267)
151 1io0_A Tropomodulin; LRR prote 98.6 7.7E-09 2.6E-13 79.9 0.6 115 118-232 31-164 (185)
152 3rw6_A Nuclear RNA export fact 98.5 9.3E-08 3.2E-12 77.8 5.8 80 193-274 168-257 (267)
153 4fs7_A Uncharacterized protein 98.5 1.8E-06 6.2E-11 74.6 13.8 194 75-278 162-376 (394)
154 4gt6_A Cell surface protein; l 98.4 1E-05 3.5E-10 69.8 16.2 86 190-279 283-368 (394)
155 4fs7_A Uncharacterized protein 98.3 1.1E-05 3.8E-10 69.6 14.3 176 92-278 155-353 (394)
156 3e4g_A ATP synthase subunit S, 98.3 2.6E-07 8.7E-12 70.2 3.4 109 163-271 53-170 (176)
157 4gt6_A Cell surface protein; l 98.3 3.7E-05 1.3E-09 66.3 16.0 63 213-278 282-344 (394)
158 3e4g_A ATP synthase subunit S, 98.2 3.2E-07 1.1E-11 69.7 2.3 84 123-206 61-150 (176)
159 4h09_A Hypothetical leucine ri 98.0 0.00023 7.9E-09 60.9 15.5 127 145-276 215-341 (379)
160 4h09_A Hypothetical leucine ri 98.0 0.00018 6.2E-09 61.5 14.2 132 118-253 212-343 (379)
161 3rfe_A Platelet glycoprotein I 97.4 0.00026 8.9E-09 50.9 6.1 56 199-256 12-68 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 4.1E-05 1.4E-09 59.1 0.9 61 195-255 98-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00014 4.7E-09 56.2 3.0 111 168-279 38-168 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.003 1E-07 45.3 6.5 57 174-232 11-68 (130)
165 2lz0_A Uncharacterized protein 49.1 33 0.0011 22.6 4.9 13 95-107 16-28 (100)
166 2lz0_A Uncharacterized protein 45.3 62 0.0021 21.2 6.3 47 110-157 7-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.8e-38 Score=268.63 Aligned_cols=248 Identities=31% Similarity=0.552 Sum_probs=202.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CcEEEEEcCCCCcce--ecCccCcCCCCCC
Q 038776 29 SGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCE--WYGVTCSPRH--QRVTILDLQNLKLAG--TLPPHIGNLSFLQ 102 (281)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~~~~~~--~~l~~l~l~~~~l~~--~~~~~~~~l~~L~ 102 (281)
.|.+.|+.++++|++.+. ++. .+.+|..+.++|. |.|+.|.... .+++.|+++++.+.+ .+|..+..+++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 578889999999999985 444 6788988888998 9999998654 789999999999998 8999999999999
Q ss_pred EEECCC-CCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC
Q 038776 103 KLDLRN-NSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN 181 (281)
Q Consensus 103 ~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 181 (281)
+|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 8898889999999999999999999998888988999999999999999998888888899999999999999
Q ss_pred cccccCCccccCCC-CCCeEEcccCCCccccccc-----------------------CCCCCCCCeEecccCcCcCCCCc
Q 038776 182 NLTGNIPSSLGNLS-SLRGLSLSRNGFYGSIPDT-----------------------FGGLKNLVNLSLVVNNLSGTIPP 237 (281)
Q Consensus 182 ~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~-----------------------~~~l~~L~~L~l~~n~~~~~~~~ 237 (281)
.+++.+|..+..++ +|++|++++|.+++.+|.. +..+++|+.|++++|.+++.+|.
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 98888888888877 7888888877776555544 44455555555555555543333
Q ss_pred cccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 238 LIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 238 ~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+..+++|++|++++|.+++.+|..+.. +++|+.|++++|++
T Consensus 240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNL 280 (313)
T ss_dssp -CCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECCSSEE
T ss_pred -ccccCCCCEEECcCCcccCcCChHHhc-CcCCCEEECcCCcc
Confidence 555667777777777777777776665 77788888887765
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=4.4e-35 Score=249.34 Aligned_cols=247 Identities=19% Similarity=0.288 Sum_probs=195.2
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCCCCCC----CCCCCCccccceeeCC--------CCCcEEEEEcCCCCcceecCccC
Q 038776 28 VSGNETDRAALLEFKSKITNDALGVLGSW----NDSIHFCEWYGVTCSP--------RHQRVTILDLQNLKLAGTLPPHI 95 (281)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~g~~~~~--------~~~~l~~l~l~~~~l~~~~~~~~ 95 (281)
.+...+++.++++|+..+..++..+...| ....++|.|.|+.|.. ...+++.|+++++.+. .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 34455688999999998866776667788 4566789999998842 2367889999999888 677778
Q ss_pred cCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCC------
Q 038776 96 GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGS------ 169 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~------ 169 (281)
..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 88889999999998888 78888888888999999888888 77888888888888888888777777776554
Q ss_pred ---CCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCC
Q 038776 170 ---LSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQ 246 (281)
Q Consensus 170 ---l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 246 (281)
+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|+.|++++|.+.+.+|..++.+++|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 788888888888877 67777777888888888888877 4555677778888888888777777777777778888
Q ss_pred EEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 247 TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 247 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+|++++|.+.+.+|..+.. +++|+.|++++|++
T Consensus 257 ~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVN 289 (328)
T ss_dssp EEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTT
T ss_pred EEECCCCCchhhcchhhhc-CCCCCEEeCCCCCc
Confidence 8888887777777777665 78888888887765
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.9e-35 Score=270.33 Aligned_cols=244 Identities=22% Similarity=0.359 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCC-------CCCCCCCCccc---cceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCC
Q 038776 32 ETDRAALLEFKSKITNDALGVLG-------SWNDSIHFCEW---YGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFL 101 (281)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~c~~---~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L 101 (281)
..|+.||.++++++.++.|.... +|..+.++|.| .|+.|... ++|+.|+++++++.|.+|+.++.+++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccc
Confidence 46889999999998766665433 79988899999 99999875 899999999999999999999999999
Q ss_pred CEEECCCCCC----------------------------------------------------------------------
Q 038776 102 QKLDLRNNSF---------------------------------------------------------------------- 111 (281)
Q Consensus 102 ~~L~l~~n~~---------------------------------------------------------------------- 111 (281)
++|++++|.+
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~ 187 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence 9999999843
Q ss_pred --------ccCCchhccCCCcccEeeccCCccccc-----------------CCccCc--CCCCCcEEEcccCCCCCCCc
Q 038776 112 --------TNEIPPQIGHLRRLQILYLQINSFDGE-----------------IPASIS--NCSNLLVVSLALNHLAGKIP 164 (281)
Q Consensus 112 --------~~~~~~~~~~l~~L~~L~l~~n~~~~~-----------------~p~~l~--~l~~L~~L~l~~n~~~~~~p 164 (281)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|
T Consensus 188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p 266 (636)
T 4eco_A 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266 (636)
T ss_dssp TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence 23 788899999999999999999975 999999 99999999999999999999
Q ss_pred hhcCCCCCCCEEeCcCCc-ccc-cCCccccCC------CCCCeEEcccCCCcccccc--cCCCCCCCCeEecccCcCcCC
Q 038776 165 SEFGSLSKLQFLSTTANN-LTG-NIPSSLGNL------SSLRGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 165 ~~~~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~ 234 (281)
..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++.+++|+.|++++|.++|.
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 999999999999999998 888 788877776 89999999999998 8888 889999999999999999888
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhhCCCC-CcEEEcccccCC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN-LRIFSITGNQFT 281 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~-L~~L~l~~N~l~ 281 (281)
+| .++.+++|++|++++|.++ .+|..+.. +++ |+.|++++|+++
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK 390 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc
Confidence 88 8888888888888888888 77877666 777 888888888764
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.5e-34 Score=267.09 Aligned_cols=246 Identities=25% Similarity=0.376 Sum_probs=189.0
Q ss_pred cccCCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCccccceeeCCCCCcEEEEEcCCCCccee---cC---------
Q 038776 25 AFSVSGNETDRAALLEFKSKITNDALGVLGSWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGT---LP--------- 92 (281)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~---~~--------- 92 (281)
|++++..+.|+.|+++||+.+. ++. .+.+|..+++||.|.|+.|. .++|+.++++++.+.|. ++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred CccccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 3444556789999999999987 665 88999988899999999998 48999999999988876 44
Q ss_pred --------------ccCcCCCCCCEEECCCCCCccCCch--hccCCCcccEeeccCCcccccCCccC-cCCCCCcEEEcc
Q 038776 93 --------------PHIGNLSFLQKLDLRNNSFTNEIPP--QIGHLRRLQILYLQINSFDGEIPASI-SNCSNLLVVSLA 155 (281)
Q Consensus 93 --------------~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~ 155 (281)
..++.+++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|+++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 4566667777777777777766666 67777777777777777776666554 677777777777
Q ss_pred cCCCCCCCchh---cCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCc
Q 038776 156 LNHLAGKIPSE---FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 156 ~n~~~~~~p~~---~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 232 (281)
+|.+.+..|.. +..+++|++|++++|.+.+..|. ..+++|++|++++|.+++.+|. ++.+++|++|++++|.++
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 77777666655 67777777777777777655432 6778888888888888776666 788888888888888888
Q ss_pred CCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 233 GTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 233 ~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+.+|..++.+++|++|++++|.+++.+|.. .+++|++|++++|++
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKF 281 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEE
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCcc
Confidence 778888888888888888888888777754 378888888888865
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.7e-33 Score=262.85 Aligned_cols=241 Identities=22% Similarity=0.307 Sum_probs=209.0
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCCCCCCCCCC-----CC--ccc------------cceeeCCCCCcEEEEEcCCCCcce
Q 038776 29 SGNETDRAALLEFKSKITNDALGVLGSWNDSI-----HF--CEW------------YGVTCSPRHQRVTILDLQNLKLAG 89 (281)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~g~~~~~~~~~l~~l~l~~~~l~~ 89 (281)
+....|+.||++|++++.+. +|..+. ++ |.| .|+.|.. .++|+.|+++++++.|
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred ccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence 34456899999999998533 454332 44 999 9999986 4899999999999999
Q ss_pred ecCccCcCCCCCCEEEC-CCCCCccC------------------------------------------------------
Q 038776 90 TLPPHIGNLSFLQKLDL-RNNSFTNE------------------------------------------------------ 114 (281)
Q Consensus 90 ~~~~~~~~l~~L~~L~l-~~n~~~~~------------------------------------------------------ 114 (281)
.+|+.++.+++|++|++ ++|.+.|.
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 99999999999999999 77654332
Q ss_pred ----------------------CchhccCCCcccEeeccCCcccc-----------------cCCccCc--CCCCCcEEE
Q 038776 115 ----------------------IPPQIGHLRRLQILYLQINSFDG-----------------EIPASIS--NCSNLLVVS 153 (281)
Q Consensus 115 ----------------------~~~~~~~l~~L~~L~l~~n~~~~-----------------~~p~~l~--~l~~L~~L~ 153 (281)
+|..++++++|++|++++|.+++ .+|..++ ++++|++|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 78889999999999999999997 3899988 999999999
Q ss_pred cccCCCCCCCchhcCCCCCCCEEeCcCCc-ccc-cCCccccCC-------CCCCeEEcccCCCcccccc--cCCCCCCCC
Q 038776 154 LALNHLAGKIPSEFGSLSKLQFLSTTANN-LTG-NIPSSLGNL-------SSLRGLSLSRNGFYGSIPD--TFGGLKNLV 222 (281)
Q Consensus 154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-~~~-~~~~~l~~l-------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~ 222 (281)
+++|.+.+.+|..++.+++|+.|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++.+++|+
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 99999999999999999999999999998 887 677765554 49999999999998 8888 899999999
Q ss_pred eEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCC-CcEEEcccccCC
Q 038776 223 NLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN-LRIFSITGNQFT 281 (281)
Q Consensus 223 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~-L~~L~l~~N~l~ 281 (281)
.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+.. +++ |+.|++++|+++
T Consensus 577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK 632 (876)
T ss_dssp EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC
T ss_pred EEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC
Confidence 9999999998 788 8888999999999999998 88887776 888 999999999874
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.8e-31 Score=224.47 Aligned_cols=202 Identities=26% Similarity=0.450 Sum_probs=142.6
Q ss_pred CcEEEEEcCC-CCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776 75 QRVTILDLQN-LKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~l~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 153 (281)
++++.|++++ +.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 4556666663 555555555566666666666666665555555555555666666665555555555555555555555
Q ss_pred cccCCCCCCCchhcCCCC-CCCE-----------------------EeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776 154 LALNHLAGKIPSEFGSLS-KLQF-----------------------LSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 154 l~~n~~~~~~p~~~~~l~-~L~~-----------------------L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
+++|.+++.+|..+..++ +|+. |++++|.+++..|..+..+++|++|++++|.+++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 555555555555555544 4444 4555555554555666777888888888888876
Q ss_pred cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEccccc
Q 038776 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 210 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|.++|.+|.. . .+++|+.+++++|+
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~-~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G-NLQRFDVSAYANNK 302 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T-TGGGSCGGGTCSSS
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c-cccccChHHhcCCC
Confidence 6665 778899999999999999999999999999999999999999999975 3 48999999999997
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.7e-30 Score=244.26 Aligned_cols=205 Identities=30% Similarity=0.482 Sum_probs=142.3
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..++.+++|++|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 34555555555555555555555666666666666666566666666666666666666666666666666666666666
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccc-------------------------------------------
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSL------------------------------------------- 191 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l------------------------------------------- 191 (281)
++|++.+.+|..+..+++|+.|++++|.+++.+|..+
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccc
Confidence 6666666666666666667777766666665555332
Q ss_pred ---------------------------cCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCC
Q 038776 192 ---------------------------GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISS 244 (281)
Q Consensus 192 ---------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 244 (281)
..+++|++|++++|.++|.+|..++.+++|+.|++++|+++|.+|..++.+++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~ 681 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC
Confidence 22356777777777777777878888888888888888888888888888888
Q ss_pred CCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 245 IQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 245 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
|+.||+++|+++|.+|..+.. +++|+.|++++|++
T Consensus 682 L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 682 LNILDLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNL 716 (768)
T ss_dssp CCEEECCSSCCEECCCGGGGG-CCCCSEEECCSSEE
T ss_pred CCEEECCCCcccCcCChHHhC-CCCCCEEECcCCcc
Confidence 888888888888888877766 88888888888875
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=3.7e-29 Score=208.68 Aligned_cols=206 Identities=20% Similarity=0.213 Sum_probs=186.1
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCc-ccccCCccCcCCCCCcEEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS-FDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~ 153 (281)
++++.|+++++.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|. +....|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 679999999999998777789999999999999999997778899999999999999997 7755578899999999999
Q ss_pred cccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776 154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 233 (281)
+++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 99999998778889999999999999999996666678999999999999999996666679999999999999999998
Q ss_pred CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 234 TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
..|..+..+++|++|++++|.+++ +|...+..+++|+.|++++|+++
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence 889999999999999999999995 55554455999999999999863
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.97 E-value=4.7e-29 Score=206.49 Aligned_cols=216 Identities=23% Similarity=0.309 Sum_probs=185.9
Q ss_pred CCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC
Q 038776 61 HFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP 140 (281)
Q Consensus 61 ~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 140 (281)
+.|.|.|..|.-. .+.+.++++++.+. .+|..+. +.+++|++++|.+.+..+..|..+++|++|++++|.++...+
T Consensus 3 ~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 5799999887542 34678999999988 5666554 689999999999996666789999999999999999984444
Q ss_pred ccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCC
Q 038776 141 ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN 220 (281)
Q Consensus 141 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 220 (281)
..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 55688999999999999999666667899999999999999999777777899999999999999999766667899999
Q ss_pred CCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 221 LVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 221 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
|+.|++++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|+++
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 999999999999776677889999999999999998 566655556999999999999874
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.3e-29 Score=212.37 Aligned_cols=201 Identities=21% Similarity=0.308 Sum_probs=189.1
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcC---------
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISN--------- 145 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~--------- 145 (281)
.+++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 67999999999999 88989999999999999999999 88999999999999999999888889987765
Q ss_pred CCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEe
Q 038776 146 CSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLS 225 (281)
Q Consensus 146 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 225 (281)
+++|++|++++|.++ .+|..++.+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.+++|+.|+
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 999999999999999 88999999999999999999999 5677899999999999999999999999999999999999
Q ss_pred cccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 226 LVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 226 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.. +++|+.+++..|.+
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGS
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHH
Confidence 9999999999999999999999999999999999999987 99999999988754
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.2e-28 Score=205.92 Aligned_cols=205 Identities=23% Similarity=0.270 Sum_probs=132.2
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCcc-------------------------CCchhccCCCcccEee
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTN-------------------------EIPPQIGHLRRLQILY 129 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~-------------------------~~~~~~~~l~~L~~L~ 129 (281)
++++.|+++++.+....+..|..+++|++|++++|.+.. .+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 456677777776663333335666666666666666542 2333344555555555
Q ss_pred ccCCcccccCC-ccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccc-cCCccccCCCCCCeEEcccCCC
Q 038776 130 LQINSFDGEIP-ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGF 207 (281)
Q Consensus 130 l~~n~~~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~ 207 (281)
+++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 55555552222 345666666666666666665555666667777777777777664 3566667777777777777777
Q ss_pred cccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCC-CCCcEEEcccccC
Q 038776 208 YGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTL-PNLRIFSITGNQF 280 (281)
Q Consensus 208 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~-~~L~~L~l~~N~l 280 (281)
++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+.. + ++|+.|++++|++
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDF 260 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC-CCTTCCEEECTTCCE
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh-hhccCCEEEccCCCe
Confidence 7666667777777777777777777655556677777777777777777666665554 5 3777777777765
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.4e-27 Score=211.64 Aligned_cols=203 Identities=22% Similarity=0.241 Sum_probs=142.8
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57888888888888777788888888888888888888777778888888888888888888555556778888888888
Q ss_pred ccCCCCCCCchhcCCCCC-------------------------CCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776 155 ALNHLAGKIPSEFGSLSK-------------------------LQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~-------------------------L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
++|.+....+..+..+++ |+.|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 888877443334444444 4555555554442 22 34455666666666666665
Q ss_pred cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 210 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|...+..+++|+.|++++|++
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCc
Confidence 55666667777777777777776666666777777777777777776 44444444477777777777765
No 13
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=2.2e-27 Score=196.98 Aligned_cols=205 Identities=21% Similarity=0.192 Sum_probs=179.2
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
..++.|+++++.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 56899999999999777778999999999999999999777778999999999999999999777788999999999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCccccc-CCccccCCCCCCeEEcccCCCcccccccCCCCCCCC----eEecccC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN-IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLV----NLSLVVN 229 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~l~~n 229 (281)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ .+++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999976666799999999999999999863 588999999999999999999977777777666666 8999999
Q ss_pred cCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 230 NLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 230 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.+++..+.. ....+|++|++++|.++ .+|..++..+++|+.|++++|+++
T Consensus 188 ~l~~~~~~~-~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGA-FKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTS-SCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccc-cCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCccc
Confidence 998554444 44558999999999998 566666666999999999999875
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.9e-27 Score=207.48 Aligned_cols=203 Identities=24% Similarity=0.264 Sum_probs=134.5
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
..++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 44566666666666555556666666666666666666555556666666666666666666333334566666666666
Q ss_pred ccCCCCCCCchh-------------------------cCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776 155 ALNHLAGKIPSE-------------------------FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 155 ~~n~~~~~~p~~-------------------------~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
++|.+....+.. +..+++|+.|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 666555333323 445556666666666555 333 35566677777777777776
Q ss_pred cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 210 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|++
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence 66777777888888888888887766777778888888888888887 45555555588888888888875
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=4.1e-27 Score=208.63 Aligned_cols=68 Identities=13% Similarity=0.301 Sum_probs=41.3
Q ss_pred cccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 212 PDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 212 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
|..++.+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+.. +++|+.|++++|++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-LDKLEVLDLSYNHI 359 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT-CTTCCEEECCSSCC
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC-cccCCEEECCCCcc
Confidence 444555566666666666666555556666666666666666666444443333 66677777776665
No 16
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=201.53 Aligned_cols=184 Identities=21% Similarity=0.262 Sum_probs=165.2
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCc-hhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP-PQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 153 (281)
.+++.|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 78 ~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 67888999998887 456678899999999999999985444 5789999999999999999988888899999999999
Q ss_pred cccCCCCC-CCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCc
Q 038776 154 LALNHLAG-KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 154 l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 232 (281)
+++|.+.+ ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 99999986 57888999999999999999999877889999999999999999999777778889999999999999999
Q ss_pred CCCCccccCCC-CCCEEEcccCcccccC
Q 038776 233 GTIPPLIFNIS-SIQTFDVGSNYIEGEM 259 (281)
Q Consensus 233 ~~~~~~l~~~~-~L~~L~l~~n~l~~~~ 259 (281)
+..|..+..++ +|++|++++|++.+..
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred ccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 88888888884 9999999999998654
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.6e-26 Score=196.81 Aligned_cols=215 Identities=23% Similarity=0.312 Sum_probs=172.2
Q ss_pred CccccceeeCCC---------CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccC
Q 038776 62 FCEWYGVTCSPR---------HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQI 132 (281)
Q Consensus 62 ~c~~~g~~~~~~---------~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 132 (281)
.|.+..+.|... .++++.|+++++.+.+..+..+..+++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 366777776532 25789999999999977777899999999999999999987889999999999999999
Q ss_pred CcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccc--cCCccccCC----------------
Q 038776 133 NSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG--NIPSSLGNL---------------- 194 (281)
Q Consensus 133 n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l---------------- 194 (281)
|.++ .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.++. ..+..+..+
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 9998 6776654 788999999998886555568888888888888888752 333333332
Q ss_pred ----CCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCC
Q 038776 195 ----SSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNL 270 (281)
Q Consensus 195 ----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L 270 (281)
++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+.. +++|
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~L 266 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD-LKLL 266 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG-CTTC
T ss_pred ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc-CccC
Confidence 46677777777777666677888888888888888888766677888888999999998888 78877765 8889
Q ss_pred cEEEcccccCC
Q 038776 271 RIFSITGNQFT 281 (281)
Q Consensus 271 ~~L~l~~N~l~ 281 (281)
+.|++++|+++
T Consensus 267 ~~L~l~~N~l~ 277 (332)
T 2ft3_A 267 QVVYLHTNNIT 277 (332)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCCCC
Confidence 99999888874
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=5.6e-27 Score=207.75 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=60.9
Q ss_pred cCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCC
Q 038776 167 FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQ 246 (281)
Q Consensus 167 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 246 (281)
+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 33444455555555554444444455555555555555555544455555555555555555555554455555566666
Q ss_pred EEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 247 TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 247 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+|++++|.++ .+|...+..+++|+.|++++|++
T Consensus 375 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 375 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCccc-cCCHhHhccCCcccEEEccCCCc
Confidence 6666666665 34433333466666666666655
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=2.3e-26 Score=192.21 Aligned_cols=199 Identities=22% Similarity=0.212 Sum_probs=175.5
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
..++.++++++++. .+|..+. +.+++|++++|.+.+..+..|..+++|++|++++|.+++ ++.. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEEC
Confidence 56788999999888 5666554 689999999999997778889999999999999999984 4433 78999999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+. .+|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 999998 7888889999999999999999966667899999999999999999977777788999999999999999966
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.+..+..+++|++|++++|.++ .+|..++. +++|+.+++++|++.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~-~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcc-cccCCeEEeCCCCcc
Confidence 5667788999999999999998 88988887 789999999999874
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.1e-26 Score=190.94 Aligned_cols=200 Identities=23% Similarity=0.235 Sum_probs=177.2
Q ss_pred EEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776 78 TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN 157 (281)
Q Consensus 78 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 157 (281)
+.++.+++++. .+|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777787777 455544 468999999999999777778999999999999999999777889999999999999999
Q ss_pred C-CCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCC
Q 038776 158 H-LAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236 (281)
Q Consensus 158 ~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 236 (281)
. +....|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..++.+++|+.|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 776668889999999999999999997778889999999999999999997777778999999999999999997666
Q ss_pred ccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 237 PLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 237 ~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
..+..+++|++|++++|.+++..|..+.. +++|+.|++++|+++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRD-LGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCS
T ss_pred HHhcCccccCEEECCCCcccccCHhHccC-cccccEeeCCCCcCC
Confidence 67899999999999999999777777765 999999999999874
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=4.3e-26 Score=193.97 Aligned_cols=215 Identities=24% Similarity=0.328 Sum_probs=156.2
Q ss_pred CccccceeeCCC---------CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccC
Q 038776 62 FCEWYGVTCSPR---------HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQI 132 (281)
Q Consensus 62 ~c~~~g~~~~~~---------~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 132 (281)
.|.+..+.|... .+.++.|+++++.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 466666666531 25788999999999977677899999999999999999977788999999999999999
Q ss_pred CcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccc--cCCccccCCC---------------
Q 038776 133 NSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG--NIPSSLGNLS--------------- 195 (281)
Q Consensus 133 n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~--------------- 195 (281)
|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..++
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 9888 6665543 667777777777765555556666666666666666542 3334444444
Q ss_pred ------CCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCC
Q 038776 196 ------SLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN 269 (281)
Q Consensus 196 ------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 269 (281)
+|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+.. +++
T Consensus 187 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~ 264 (330)
T 1xku_A 187 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD-HKY 264 (330)
T ss_dssp CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT-CSS
T ss_pred CccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc-CCC
Confidence 4555555555555555666777777778888777777666667777777888888888777 67766655 778
Q ss_pred CcEEEcccccCC
Q 038776 270 LRIFSITGNQFT 281 (281)
Q Consensus 270 L~~L~l~~N~l~ 281 (281)
|+.|++++|+++
T Consensus 265 L~~L~l~~N~i~ 276 (330)
T 1xku_A 265 IQVVYLHNNNIS 276 (330)
T ss_dssp CCEEECCSSCCC
T ss_pred cCEEECCCCcCC
Confidence 888888888764
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=204.11 Aligned_cols=180 Identities=24% Similarity=0.292 Sum_probs=144.5
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC--------------
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP-------------- 140 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-------------- 140 (281)
++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence 567777777777776655667777777777777777764444456666777777776666553222
Q ss_pred -----------ccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776 141 -----------ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 141 -----------~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
..+.++++|++|++++|.++ .+| .+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 24566778888888888887 455 47889999999999999998888999999999999999999998
Q ss_pred cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256 (281)
Q Consensus 210 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 256 (281)
..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88889999999999999999999777778889999999999999876
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.3e-26 Score=203.81 Aligned_cols=182 Identities=23% Similarity=0.256 Sum_probs=151.5
Q ss_pred CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc------------
Q 038776 74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA------------ 141 (281)
Q Consensus 74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~------------ 141 (281)
.++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+.
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 36788888888888877777788888888888888888855556677888888888888877633222
Q ss_pred -------------cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCc
Q 038776 142 -------------SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFY 208 (281)
Q Consensus 142 -------------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 208 (281)
.+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+++..|..+..+++|++|++++|.++
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 35566777777777777763 34 4788999999999999999888889999999999999999999
Q ss_pred ccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccc
Q 038776 209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257 (281)
Q Consensus 209 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 257 (281)
+..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.-
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 8888899999999999999999997777788899999999999998863
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.2e-26 Score=210.67 Aligned_cols=203 Identities=20% Similarity=0.210 Sum_probs=137.8
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..+..++++++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 45667777777777666667777888888888888877666667777888888888888777333334577788888888
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccC-----------------------------------------------
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNI----------------------------------------------- 187 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~----------------------------------------------- 187 (281)
++|.+.+..|..++.+++|+.|++++|.+++..
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L 234 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence 888877666667777777777777777665321
Q ss_pred ------------CccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcc
Q 038776 188 ------------PSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYI 255 (281)
Q Consensus 188 ------------~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 255 (281)
+..+..+++|++|++++|.+++..|..++.+++|+.|++++|.+++ +|..+..+++|+.|++++|.+
T Consensus 235 ~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence 1123344566666666666665566666666666666666666663 455555666777777777776
Q ss_pred cccCChhhhhCCCCCcEEEcccccC
Q 038776 256 EGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 256 ~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+ .+|..+.. +++|+.|++++|++
T Consensus 314 ~-~i~~~~~~-l~~L~~L~L~~N~l 336 (597)
T 3oja_B 314 L-HVERNQPQ-FDRLENLYLDHNSI 336 (597)
T ss_dssp C-CCGGGHHH-HTTCSEEECCSSCC
T ss_pred C-ccCccccc-CCCCCEEECCCCCC
Confidence 6 56655554 66666666666665
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.9e-27 Score=204.18 Aligned_cols=205 Identities=20% Similarity=0.223 Sum_probs=120.6
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|+++++.+.+..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 34555666666555444445555556666666665555444555555555666666555555222222555555555555
Q ss_pred ccCCCCCCCch--hcCCCCCCCEEeCcCCc-ccccCCccccCCCCCCeEEcccCCCcccccccCCC--------------
Q 038776 155 ALNHLAGKIPS--EFGSLSKLQFLSTTANN-LTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGG-------------- 217 (281)
Q Consensus 155 ~~n~~~~~~p~--~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-------------- 217 (281)
++|.+. .+|. .+..+++|+.|++++|. +.+..+..+..+++|++|++++|.+++..|..+..
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 555555 2332 45555555555555552 33333344555555555555555555444444444
Q ss_pred ----------CCCCCeEecccCcCcCC-------------------------------CCccccCCCCCCEEEcccCccc
Q 038776 218 ----------LKNLVNLSLVVNNLSGT-------------------------------IPPLIFNISSIQTFDVGSNYIE 256 (281)
Q Consensus 218 ----------l~~L~~L~l~~n~~~~~-------------------------------~~~~l~~~~~L~~L~l~~n~l~ 256 (281)
+++|+.|++++|.+++. +|..+..+++|++|++++|.++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 45566666666665542 2334567788999999999998
Q ss_pred ccCChhhhhCCCCCcEEEcccccCC
Q 038776 257 GEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 257 ~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.+|..++..+++|++|++++|+++
T Consensus 291 -~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 291 -SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 788877666899999999999874
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=205.23 Aligned_cols=206 Identities=19% Similarity=0.240 Sum_probs=128.2
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
..++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 45666667766666655566666666777777766666555666666666666666666666333334566666666666
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC-
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG- 233 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~- 233 (281)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 6666665555566666666666666666665555556666666666666666654444445555555555555555543
Q ss_pred -----------------------CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 234 -----------------------TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 -----------------------~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.+|.......+|++|++++|.++ .+|...+..+++|+.|++++|+++
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCC
Confidence 33333333445666666667776 556555555888888888888764
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=8.3e-26 Score=196.53 Aligned_cols=202 Identities=21% Similarity=0.236 Sum_probs=133.0
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCcc-CcCCCCCcEEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPAS-ISNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~ 153 (281)
++++.|+++++.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|.. +.++++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 56677777777777665566777777777777777777666666777777777777777776 44443 46777777777
Q ss_pred cccCCCCCCCchhcCCCCCCCEEeCcCCcccccCC---------------------------------------------
Q 038776 154 LALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIP--------------------------------------------- 188 (281)
Q Consensus 154 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~--------------------------------------------- 188 (281)
+++|.+.+..|..+..+++|+.|++++|.+++...
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 77777776556666777777777777766553210
Q ss_pred --------------ccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCc
Q 038776 189 --------------SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254 (281)
Q Consensus 189 --------------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 254 (281)
..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.
T Consensus 228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc
Confidence 123344566666666666665556666666777777777776663 45555566677777777777
Q ss_pred ccccCChhhhhCCCCCcEEEcccccC
Q 038776 255 IEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 255 l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+. .+|..+.. +++|+.|++++|++
T Consensus 307 l~-~~~~~~~~-l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 307 LL-HVERNQPQ-FDRLENLYLDHNSI 330 (390)
T ss_dssp CC-CCGGGHHH-HTTCSEEECCSSCC
T ss_pred ce-ecCccccc-cCcCCEEECCCCcc
Confidence 66 55555554 66677776666665
No 28
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.4e-27 Score=198.67 Aligned_cols=200 Identities=23% Similarity=0.301 Sum_probs=170.9
Q ss_pred CcEEEEEcCCCCcceecCccC--cCCCCCCEEECCCCCCccCCchhccCC-----CcccEeeccCCcccccCCccCcCCC
Q 038776 75 QRVTILDLQNLKLAGTLPPHI--GNLSFLQKLDLRNNSFTNEIPPQIGHL-----RRLQILYLQINSFDGEIPASISNCS 147 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~p~~l~~l~ 147 (281)
.+++.|++++|.+.+.+|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..|..++.++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 678999999999998888876 8899999999999999966 8777776 8999999999999977778999999
Q ss_pred CCcEEEcccCCCCCC--Cchhc--CCCCCCCEEeCcCCcccc--cCC-ccccCCCCCCeEEcccCCCccccc-ccCCCCC
Q 038776 148 NLLVVSLALNHLAGK--IPSEF--GSLSKLQFLSTTANNLTG--NIP-SSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLK 219 (281)
Q Consensus 148 ~L~~L~l~~n~~~~~--~p~~~--~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~ 219 (281)
+|++|++++|++.+. .|..+ ..+++|++|++++|++++ ..+ ..+..+++|++|++++|.+++..| ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 999999999998754 34454 889999999999999983 222 334578999999999999997765 4566789
Q ss_pred CCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 220 NLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 220 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +. .+++|+.|++++|+++
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~-~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PD-ELPQVGNLSLKGNPFL 309 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TT-TSCEEEEEECTTCTTT
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-Hh-hCCCCCEEeccCCCCC
Confidence 9999999999998 7787776 8999999999999954 65 54 4999999999999985
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.1e-27 Score=201.53 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=149.8
Q ss_pred CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc--cCcCCCCCcE
Q 038776 74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA--SISNCSNLLV 151 (281)
Q Consensus 74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~--~l~~l~~L~~ 151 (281)
.++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|. .+..+++|++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQI 153 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcE
Confidence 478999999999999877888999999999999999998555556899999999999999998 5555 7888999999
Q ss_pred EEcccCC-CCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCC------------------------
Q 038776 152 VSLALNH-LAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNG------------------------ 206 (281)
Q Consensus 152 L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~------------------------ 206 (281)
|++++|. +....+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 9999984 665556678889999999999998887777777776666665555554
Q ss_pred Cccc-------------------------------ccccCCCCCCCCeEecccCcCcCCCCcc-ccCCCCCCEEEcccCc
Q 038776 207 FYGS-------------------------------IPDTFGGLKNLVNLSLVVNNLSGTIPPL-IFNISSIQTFDVGSNY 254 (281)
Q Consensus 207 ~~~~-------------------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~ 254 (281)
+++. +|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|+
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCC
Confidence 4321 2334567889999999999999 56655 5899999999999999
Q ss_pred ccccCC
Q 038776 255 IEGEMP 260 (281)
Q Consensus 255 l~~~~p 260 (281)
+.+..|
T Consensus 313 ~~~~~~ 318 (353)
T 2z80_A 313 WDCSCP 318 (353)
T ss_dssp BCCCHH
T ss_pred ccCcCC
Confidence 997665
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=7.6e-26 Score=201.75 Aligned_cols=206 Identities=21% Similarity=0.159 Sum_probs=138.9
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..|..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 135 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence 56777777777777666667777777777777777776444445667777777777777776555666666666666666
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCC------------------------ccc
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGF------------------------YGS 210 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~------------------------~~~ 210 (281)
++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+ .+.
T Consensus 136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 66666655555566666666666666655533333344444555555544444 444
Q ss_pred ccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 211 IPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 211 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+|.......+|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|+.|++++|+++
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML-HELLRLQEIQLVGGQLA 285 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC-TTCTTCCEEECCSSCCS
T ss_pred cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc-cccccCCEEECCCCccc
Confidence 44444444577788888888885444678899999999999999995544444 45999999999999874
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=4.1e-26 Score=198.45 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=118.1
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 66788999999888554445788999999999999999777779999999999999999999777778999999999999
Q ss_pred ccCCCCCCCchh-cCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776 155 ALNHLAGKIPSE-FGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 155 ~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
++|.+. .+|.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 999999 45544 6899999999999999997777789999999999999998874
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1e-25 Score=191.70 Aligned_cols=203 Identities=22% Similarity=0.231 Sum_probs=155.0
Q ss_pred CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCch----------------------hccCCCcccEeecc
Q 038776 74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPP----------------------QIGHLRRLQILYLQ 131 (281)
Q Consensus 74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------------~~~~l~~L~~L~l~ 131 (281)
.++++.|++++|.+.+..|..+..+++|++|++++|.+. .+|. .+..+++|++|+++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 367888888888888777778888888888888888766 3333 34455556666666
Q ss_pred CCcccc--cCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc
Q 038776 132 INSFDG--EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG 209 (281)
Q Consensus 132 ~n~~~~--~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 209 (281)
+|.+.. ..+..+..+++|++|++++|.+. .+|..+. ++|+.|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 665532 34455666666777777666666 3444332 678888888888887777889999999999999999998
Q ss_pred cccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhh-----CCCCCcEEEcccccCC
Q 038776 210 SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGT-----TLPNLRIFSITGNQFT 281 (281)
Q Consensus 210 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~-----~~~~L~~L~l~~N~l~ 281 (281)
..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..+.. ..+.++.+++++|++.
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 77778999999999999999998 78888999999999999999998443333321 1478999999999873
No 33
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=2.3e-25 Score=182.38 Aligned_cols=192 Identities=24% Similarity=0.265 Sum_probs=167.5
Q ss_pred CCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC
Q 038776 61 HFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP 140 (281)
Q Consensus 61 ~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 140 (281)
.|+.|.|..|.. ..+.++.+++.+. .+|..+. +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 467888899953 3457899999888 5666665 689999999999998788889999999999999999997777
Q ss_pred ccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCC
Q 038776 141 ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN 220 (281)
Q Consensus 141 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 220 (281)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 78899999999999999999776677899999999999999999665566788999999999999999776778999999
Q ss_pred CCeEecccCcCcCCCCccccCCCCCCEEEcccCccccc
Q 038776 221 LVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGE 258 (281)
Q Consensus 221 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 258 (281)
|+.|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999977777889999999999999999865
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=4.5e-26 Score=208.89 Aligned_cols=204 Identities=22% Similarity=0.207 Sum_probs=174.2
Q ss_pred CcEEEEEcCCCCccee--cCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC-ccCcCCCCCcE
Q 038776 75 QRVTILDLQNLKLAGT--LPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP-ASISNCSNLLV 151 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~ 151 (281)
++++.+++++|.+.+. .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..| ..+..+++|++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 6778888888887755 3667788888888888888877 466778888999999999998886666 57888999999
Q ss_pred EEcccCCCCCCCchhcCCCCCCCEEeCcCCcccc-cCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCc
Q 038776 152 VSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN 230 (281)
Q Consensus 152 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 230 (281)
|++++|.+.+..|..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|+
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 9999999988888888999999999999999887 367888899999999999999988888889999999999999999
Q ss_pred CcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCC-CCcEEEcccccCC
Q 038776 231 LSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLP-NLRIFSITGNQFT 281 (281)
Q Consensus 231 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~-~L~~L~l~~N~l~ 281 (281)
+++..|..+..+++|++|++++|+++ .+|..+.. ++ +|+.|++++|+++
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~-l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH-FPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG-SCTTCCEEECCSCCCC
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh-hcccCcEEEccCCCcc
Confidence 99877888999999999999999998 77777665 76 5999999999874
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1e-25 Score=206.46 Aligned_cols=204 Identities=23% Similarity=0.234 Sum_probs=129.9
Q ss_pred CcEEEEEcCCCCcceec--CccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc-cCcCCCCCcE
Q 038776 75 QRVTILDLQNLKLAGTL--PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA-SISNCSNLLV 151 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~ 151 (281)
++++.|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|. .+..+++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 34555555555554433 44455566666666666665555555566666666666666666544433 2566666666
Q ss_pred EEcccCCCCCCCchhcCCCCCCCEEeCcCCccccc---CCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEeccc
Q 038776 152 VSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN---IPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV 228 (281)
Q Consensus 152 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 228 (281)
|++++|.+.+..|..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++..|..++.+++|+.|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 66666666655566666667777777777766542 224466667777777777777666666777777777777777
Q ss_pred CcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 229 NNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 229 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
|++++..|..+..+++| +|++++|.+++..|..+.. +++|+.|++++|++
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI-LSQQRTINLRQNPL 559 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH-HHTSSEEECTTCCE
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhccc-CCCCCEEeCCCCCc
Confidence 77776667777777777 7777777777554444444 67777777777765
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=9.7e-27 Score=214.38 Aligned_cols=203 Identities=23% Similarity=0.374 Sum_probs=178.3
Q ss_pred CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCC-Ccc-CCchhccCC------CcccEeeccCCcccccCCc--cC
Q 038776 74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNS-FTN-EIPPQIGHL------RRLQILYLQINSFDGEIPA--SI 143 (281)
Q Consensus 74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~p~--~l 143 (281)
..+++.|++++|.+.+.+|..++.+++|++|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 3678999999999999999999999999999999998 887 789888776 99999999999999 8888 89
Q ss_pred cCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCC-CCeEEcccCCCcccccccCCCCC--C
Q 038776 144 SNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSS-LRGLSLSRNGFYGSIPDTFGGLK--N 220 (281)
Q Consensus 144 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~ 220 (281)
+++++|++|++++|.+.|.+| .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 999999999999999998888 8888999999999999988 78888888888 999999999988 7787777654 8
Q ss_pred CCeEecccCcCcCCCCcccc-------CCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 221 LVNLSLVVNNLSGTIPPLIF-------NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 221 L~~L~l~~n~~~~~~~~~l~-------~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
|+.|++++|.+++.+|..+. .+++|++|++++|.++ .+|..++..+++|+.|++++|+++
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence 89999999999888887777 6778888999988888 778777777888888888888764
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=6.2e-25 Score=201.35 Aligned_cols=204 Identities=23% Similarity=0.220 Sum_probs=112.2
Q ss_pred cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCcc-CcCCCCCcEEEc
Q 038776 76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPAS-ISNCSNLLVVSL 154 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~l 154 (281)
+++.|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..+++|++|++
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 3444444444444 33444444444455555544444333444444455555555555444333332 455555555555
Q ss_pred ccCCCCCCC--chhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccc-cCCCCCCCCeEecccCcC
Q 038776 155 ALNHLAGKI--PSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD-TFGGLKNLVNLSLVVNNL 231 (281)
Q Consensus 155 ~~n~~~~~~--p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~ 231 (281)
++|.+.+.. +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 555555332 44455566666666666666555555566666666666666666544433 256666666666666666
Q ss_pred cCCCCccccCCCCCCEEEcccCccccc-C--ChhhhhCCCCCcEEEcccccCC
Q 038776 232 SGTIPPLIFNISSIQTFDVGSNYIEGE-M--PLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 232 ~~~~~~~l~~~~~L~~L~l~~n~l~~~-~--p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
++..|..+..+++|++|++++|.+++. + +..+.. +++|+.|++++|+++
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-LGRLEILVLSFCDLS 489 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-CTTCCEEECTTSCCC
T ss_pred CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc-CCCccEEECCCCccC
Confidence 666666666667777777777766642 1 122333 677777777777653
No 38
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=4.2e-25 Score=182.93 Aligned_cols=194 Identities=22% Similarity=0.244 Sum_probs=145.0
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.++++++.+.. + +.+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 567788888887763 2 247778888888888888774 3 36778888888888888888555556778888888888
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+.|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 88888866666678888888888888888765555667788888888888888866666677888888888888888876
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+..+..+++|++|++++|++.+. +++|+.+++++|.+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKH 234 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHT
T ss_pred CHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhC
Confidence 666677888888888888877643 33455555555443
No 39
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.8e-24 Score=178.90 Aligned_cols=184 Identities=24% Similarity=0.253 Sum_probs=163.3
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
..++.|+++++.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 56899999999999776678999999999999999998555566789999999999999999655567889999999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 99999977777789999999999999999966556688999999999999999977777789999999999999999976
Q ss_pred CCccccCCCCCCEEEcccCccccc
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGE 258 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~ 258 (281)
.+..+..+++|+.|++++|++...
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHHHhccccCCCEEEecCCCeeCC
Confidence 666788899999999999998643
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=3e-25 Score=203.45 Aligned_cols=203 Identities=20% Similarity=0.154 Sum_probs=174.0
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccC--CchhccCCCcccEeeccCCcccccCCccCcCCCCCcEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNE--IPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 152 (281)
++++.++++++...+.. .+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHL 404 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEE
T ss_pred CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCee
Confidence 44555555555333322 456778888888888888754 4778889999999999999988 577889999999999
Q ss_pred EcccCCCCCCCc-hhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcc-cccccCCCCCCCCeEecccCc
Q 038776 153 SLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYG-SIPDTFGGLKNLVNLSLVVNN 230 (281)
Q Consensus 153 ~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~ 230 (281)
++++|.+.+..| ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..++.+++|+.|++++|.
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 999999997777 578999999999999999998888899999999999999999987 478889999999999999999
Q ss_pred CcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 231 LSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 231 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+++..|..+..+++|++|++++|++++..|..+.. +++|+.|++++|+++
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ-LYSLSTLDCSFNRIE 534 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT-CTTCCEEECTTSCCC
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHccC-CCcCCEEECCCCcCc
Confidence 99888889999999999999999999877877766 999999999999875
No 41
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.93 E-value=2.2e-24 Score=176.49 Aligned_cols=179 Identities=22% Similarity=0.280 Sum_probs=158.0
Q ss_pred CCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeC
Q 038776 99 SFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLST 178 (281)
Q Consensus 99 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 178 (281)
...++++++++.+. .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35688999999998 6777654 68999999999999777778999999999999999999877778999999999999
Q ss_pred cCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccccc
Q 038776 179 TANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGE 258 (281)
Q Consensus 179 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 258 (281)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS- 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc-
Confidence 9999997666788999999999999999997777778899999999999999997666689999999999999999995
Q ss_pred CChhhhhCCCCCcEEEcccccCC
Q 038776 259 MPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 259 ~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+|...+..+++|+.|++++|+|+
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCHHHHhCCCCCCEEEeeCCcee
Confidence 44444445999999999999974
No 42
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=189.73 Aligned_cols=200 Identities=21% Similarity=0.244 Sum_probs=168.6
Q ss_pred CcEEEEEcCCCCcceecCccC--cCCCCCCEEECCCCCCccCCc----hhccCCCcccEeeccCCcccccCCccCcCCCC
Q 038776 75 QRVTILDLQNLKLAGTLPPHI--GNLSFLQKLDLRNNSFTNEIP----PQIGHLRRLQILYLQINSFDGEIPASISNCSN 148 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~ 148 (281)
.+++.|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 358999999999998888887 889999999999999986554 34567999999999999998777788999999
Q ss_pred CcEEEcccCCCCCC--Cc--hhcCCCCCCCEEeCcCCcccccCCc----cccCCCCCCeEEcccCCCcccccccCCCC--
Q 038776 149 LLVVSLALNHLAGK--IP--SEFGSLSKLQFLSTTANNLTGNIPS----SLGNLSSLRGLSLSRNGFYGSIPDTFGGL-- 218 (281)
Q Consensus 149 L~~L~l~~n~~~~~--~p--~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~~~~l-- 218 (281)
|++|++++|++.+. ++ ..+..+++|++|++++|+++ .++. .+..+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999997642 22 22468999999999999997 3232 24678999999999999998878777766
Q ss_pred -CCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 219 -KNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 219 -~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
++|++|++++|.++ .+|..+. ++|++|++++|++++ +|. + ..+++|+.|++++|+|+
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~-~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-P-DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-T-TSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-h-hhCCCccEEECcCCCCC
Confidence 69999999999999 6777764 799999999999995 443 3 44899999999999985
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=2.4e-24 Score=199.93 Aligned_cols=205 Identities=25% Similarity=0.291 Sum_probs=110.1
Q ss_pred cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCc-hhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP-PQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.++.+++++|.+.+..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 46666777777776667777777788888888887765554 46677777777777777665444444444444444444
Q ss_pred ccCCCC--CCCchhcCCCCCCCEEeCcCCcccccCCccccC--------------------------------CCCCCeE
Q 038776 155 ALNHLA--GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGN--------------------------------LSSLRGL 200 (281)
Q Consensus 155 ~~n~~~--~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~--------------------------------l~~L~~L 200 (281)
++|.+. +..|..+..+++|+.|++++|.+++..+..+.. +++|++|
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 444443 233444444444444444444444333333444 4455555
Q ss_pred EcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 201 SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 201 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++++|.++...+..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..+..+...+++|+.+++++|++
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 55555554222233455555555555555555333334445555555555555555322222221245555555555554
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=4.8e-25 Score=199.78 Aligned_cols=205 Identities=17% Similarity=0.172 Sum_probs=167.7
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..|..|..+++|++|++++|.+.+..|.+|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57889999999988777788889999999999999998777788899999999999999988655566888999999999
Q ss_pred ccCCCCC-CCchhcCCCCCCCEEeCcCCcccccCC-ccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCc
Q 038776 155 ALNHLAG-KIPSEFGSLSKLQFLSTTANNLTGNIP-SSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 155 ~~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 232 (281)
++|.+.+ ..|..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..++.+++|++|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9998885 356678889999999999988544555 57888899999999999998888888888999999999998876
Q ss_pred CCCCcc-ccCCCCCCEEEcccCcccccC--ChhhhhCCCCCcEEEcccccC
Q 038776 233 GTIPPL-IFNISSIQTFDVGSNYIEGEM--PLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 233 ~~~~~~-l~~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+|.. +..+++|++|++++|.+++.. |..+...+++|+.|++++|.+
T Consensus 186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence 34443 456888999999999888532 333444578899999998875
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-24 Score=199.38 Aligned_cols=136 Identities=21% Similarity=0.218 Sum_probs=120.2
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.++++++.+....+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 45778899999888655556788999999999999999878889999999999999999999777778899999999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccc
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGS 210 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 210 (281)
++|.+.+..+..++.+++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 99999955445579999999999999999988788899999999999999988753
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=4e-25 Score=199.09 Aligned_cols=83 Identities=25% Similarity=0.272 Sum_probs=61.1
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccc-cCCccCcCCCCCcEEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG-EIPASISNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~ 153 (281)
.+++.|++++|.+.+..|..|..+++|++|++++|.+. .+|.. .+++|++|++++|.+++ .+|..++++++|++|+
T Consensus 45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~ 121 (520)
T 2z7x_B 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121 (520)
T ss_dssp TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred ccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence 66777777777777666777777777888888777777 55554 67778888888877775 3567777777777777
Q ss_pred cccCCCC
Q 038776 154 LALNHLA 160 (281)
Q Consensus 154 l~~n~~~ 160 (281)
+++|.+.
T Consensus 122 L~~n~l~ 128 (520)
T 2z7x_B 122 LSTTHLE 128 (520)
T ss_dssp EEESSCC
T ss_pred ecCcccc
Confidence 7777664
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=7.9e-25 Score=207.75 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCCcceec-CccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCcc--CcCCCCCcE
Q 038776 75 QRVTILDLQNLKLAGTL-PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPAS--ISNCSNLLV 151 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--l~~l~~L~~ 151 (281)
.+++.|++++|...+.+ |..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.. ++++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 44455555555333333 444555555555555555555555555555555666666555555434433 555566666
Q ss_pred EEcccCCCCCCCc-hhcCCCCCCCEEeCcCCcccc
Q 038776 152 VSLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTG 185 (281)
Q Consensus 152 L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~ 185 (281)
|++++|.+.+..+ ..++++++|++|++++|.+++
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 6666665554333 345566666666666555543
No 48
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=4e-24 Score=177.02 Aligned_cols=194 Identities=19% Similarity=0.248 Sum_probs=164.6
Q ss_pred EcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCC
Q 038776 81 DLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLA 160 (281)
Q Consensus 81 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~ 160 (281)
++..+.+.+.. ....+++|+.|++++|.+. .+ ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 25 NLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC
T ss_pred HhcCccccccc--ccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC
Confidence 34444444332 2456789999999999987 33 358899999999999999984 3 47889999999999999999
Q ss_pred CCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCcccc
Q 038776 161 GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240 (281)
Q Consensus 161 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 240 (281)
+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+.|++++|.+++..+..++
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 77777789999999999999999977667789999999999999999977777789999999999999999977777789
Q ss_pred CCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 241 NISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 241 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.+++|++|++++|.+++..+ ..+..+++|+.|++++|+++
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCcc
Confidence 99999999999999996555 44445999999999999874
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=1.5e-24 Score=197.15 Aligned_cols=89 Identities=24% Similarity=0.260 Sum_probs=54.0
Q ss_pred cCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC--CCCccccCCCCCCEEEcccCcccccCChhhhhCCCC
Q 038776 192 GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG--TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN 269 (281)
Q Consensus 192 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 269 (281)
..+++|++|++++|.+++.+|..++.+++|+.|++++|++++ .+|..+..+++|++|++++|.+++.+|...+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 344566666666666665566666666666666666666664 223445666666677777766665455554444555
Q ss_pred CcEEEcccccC
Q 038776 270 LRIFSITGNQF 280 (281)
Q Consensus 270 L~~L~l~~N~l 280 (281)
|+.|++++|++
T Consensus 430 L~~L~l~~n~l 440 (562)
T 3a79_B 430 ILVLNLSSNML 440 (562)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCCC
Confidence 66666665554
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=8.4e-25 Score=197.00 Aligned_cols=59 Identities=31% Similarity=0.447 Sum_probs=37.4
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCcc-CCchhccCCCcccEeeccCCccc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTN-EIPPQIGHLRRLQILYLQINSFD 136 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~ 136 (281)
++++.|++++|.+. .+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.
T Consensus 69 ~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 69 QELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp TTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 56666777776666 34443 56667777777776664 35566666666666666666654
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=2.7e-24 Score=183.04 Aligned_cols=204 Identities=24% Similarity=0.201 Sum_probs=153.6
Q ss_pred CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776 74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 153 (281)
.++++.|++++|.+.+..|..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|+
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 377899999999998877888999999999999999887 5665443 6778888888777744444567777777777
Q ss_pred cccCCCCC--CCchhcCCC--------------------CCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccc
Q 038776 154 LALNHLAG--KIPSEFGSL--------------------SKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSI 211 (281)
Q Consensus 154 l~~n~~~~--~~p~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 211 (281)
+++|.+.. ..|..+..+ ++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 77777642 333333322 46777777777777666677888889999999999988777
Q ss_pred cccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhC-----CCCCcEEEcccccCC
Q 038776 212 PDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTT-----LPNLRIFSITGNQFT 281 (281)
Q Consensus 212 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~-----~~~L~~L~l~~N~l~ 281 (281)
+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..+... .++|+.|++++|+++
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 777888889999999999888 678888888899999999998884433333221 466888888888763
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.9e-25 Score=209.32 Aligned_cols=202 Identities=21% Similarity=0.326 Sum_probs=149.0
Q ss_pred CCcEEEEEcCCCCcce-----------------ecCccCc--CCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCc
Q 038776 74 HQRVTILDLQNLKLAG-----------------TLPPHIG--NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134 (281)
Q Consensus 74 ~~~l~~l~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 134 (281)
..+++.|++++|.+.+ .+|..++ .+++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 3678889999998887 3788877 88899999999998888888888888899999998887
Q ss_pred -ccc-cCCccCcCC-------CCCcEEEcccCCCCCCCch--hcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcc
Q 038776 135 -FDG-EIPASISNC-------SNLLVVSLALNHLAGKIPS--EFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLS 203 (281)
Q Consensus 135 -~~~-~~p~~l~~l-------~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 203 (281)
+++ .+|..++.+ ++|++|++++|.+. .+|. .++.+++|+.|++++|.++ .+| .+..+++|++|+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence 776 667654443 48888888888888 7777 7888888888888888877 666 67777777777777
Q ss_pred cCCCcccccccCCCCCC-CCeEecccCcCcCCCCccccCCC-------------------------------CCCEEEcc
Q 038776 204 RNGFYGSIPDTFGGLKN-LVNLSLVVNNLSGTIPPLIFNIS-------------------------------SIQTFDVG 251 (281)
Q Consensus 204 ~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~l~~~~-------------------------------~L~~L~l~ 251 (281)
+|.++ .+|..+..+++ |+.|++++|.++ .+|..+...+ +|+.|+++
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 77777 67766777776 777777777766 4554443332 45555555
Q ss_pred cCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 252 SNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 252 ~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+|.++ .+|..++..+++|+.|++++|+++
T Consensus 682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 682 YNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp SSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred CCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 55555 556666555677777777777653
No 53
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=1.7e-24 Score=175.82 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=169.9
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCC-CccCCchhccCCCcccEeeccC-CcccccCCccCcCCCCCcEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNS-FTNEIPPQIGHLRRLQILYLQI-NSFDGEIPASISNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~l~~l~~L~~L 152 (281)
..++.|+++++.+.+..+..|..+++|++|++++|. +....+..|.++++|++|++++ |.+++..+..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 578999999999997777789999999999999997 8756666899999999999998 99986666788999999999
Q ss_pred EcccCCCCCCCchhcCCCCCCC---EEeCcCC-cccccCCccccCCCCCC-eEEcccCCCcccccccCCCCCCCCeEecc
Q 038776 153 SLALNHLAGKIPSEFGSLSKLQ---FLSTTAN-NLTGNIPSSLGNLSSLR-GLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227 (281)
Q Consensus 153 ~l~~n~~~~~~p~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 227 (281)
++++|.+.+ +|. +..+++|+ .|++++| .+++..+..+..+++|+ +|++++|.++ .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999985 676 88888888 9999999 88866566788999999 9999999998 555544344899999999
Q ss_pred cCc-CcCCCCccccCC-CCCCEEEcccCcccccCChhhhhCCCCCcEEEccccc
Q 038776 228 VNN-LSGTIPPLIFNI-SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 228 ~n~-~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
+|+ +++..+..+..+ ++|+.|++++|.++ .+|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence 995 886666778888 99999999999998 66654 38899999999873
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.4e-27 Score=198.62 Aligned_cols=200 Identities=23% Similarity=0.283 Sum_probs=161.3
Q ss_pred EEEEEcCCCCcc-eecCccCc-------CCCCCCEEECCCCCCccCCchhc--cCCCcccEeeccCCcccccCCccCcCC
Q 038776 77 VTILDLQNLKLA-GTLPPHIG-------NLSFLQKLDLRNNSFTNEIPPQI--GHLRRLQILYLQINSFDGEIPASISNC 146 (281)
Q Consensus 77 l~~l~l~~~~l~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p~~l~~l 146 (281)
++.++++++.+. ..+|..+. .+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 455666676663 34555444 68899999999999998888876 8899999999999999855 7777666
Q ss_pred -----CCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCccccc--CCccc--cCCCCCCeEEcccCCCcc--ccc-cc
Q 038776 147 -----SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN--IPSSL--GNLSSLRGLSLSRNGFYG--SIP-DT 214 (281)
Q Consensus 147 -----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~ 214 (281)
++|++|++++|++.+..|..++.+++|++|++++|++.+. .|..+ ..+++|++|++++|.+++ .++ ..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 8999999999999977778899999999999999998754 33444 788999999999999883 222 33
Q ss_pred CCCCCCCCeEecccCcCcCCCC-ccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 215 FGGLKNLVNLSLVVNNLSGTIP-PLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 215 ~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|+.|++++|+++
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLD 287 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCC
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCC
Confidence 4577899999999999987664 45666789999999999998 7887664 78999999999875
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.3e-24 Score=178.81 Aligned_cols=195 Identities=21% Similarity=0.222 Sum_probs=166.0
Q ss_pred cCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCC
Q 038776 82 LQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAG 161 (281)
Q Consensus 82 l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~ 161 (281)
-.+.++. .+|..+. +.+++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 14 c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 14 CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp CTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3344444 4555553 579999999999997777789999999999999999996667789999999999999999997
Q ss_pred CCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccc-ccccCCCCCCCCeEecccCcCcCCCCcccc
Q 038776 162 KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGS-IPDTFGGLKNLVNLSLVVNNLSGTIPPLIF 240 (281)
Q Consensus 162 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 240 (281)
..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+.
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 7778899999999999999999976666789999999999999999863 688999999999999999999977667777
Q ss_pred CCCCCC----EEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 241 NISSIQ----TFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 241 ~~~~L~----~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.+++|+ +|++++|.+. .++...+. ..+|+.|++++|+++
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~-~~~~~~~~-~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLK 213 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCC-EECTTSSC-SCCEEEEECCSSCCS
T ss_pred hhhhccccceeeecCCCccc-ccCccccC-CCcccEEECCCCcee
Confidence 666666 8999999998 45555555 568999999999874
No 56
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=7.4e-24 Score=196.69 Aligned_cols=186 Identities=20% Similarity=0.224 Sum_probs=140.1
Q ss_pred CcEEEEEcCCCCcceecC-ccCcCCCCCCEEECCCCCCc--------------------------cCCchhccCCCcccE
Q 038776 75 QRVTILDLQNLKLAGTLP-PHIGNLSFLQKLDLRNNSFT--------------------------NEIPPQIGHLRRLQI 127 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~--------------------------~~~~~~~~~l~~L~~ 127 (281)
++++.|++++|.+.+.++ ..+..+++|++|++++|.+. +.+|..+..+++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 456667777666665444 34555556666666555543 345666777788888
Q ss_pred eeccCCcccccCCccCcCCCCCcEEEcccCCCCCCC----c----hhcCCCCCCCEEeCcCCcccccCCccccCCCCCCe
Q 038776 128 LYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKI----P----SEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRG 199 (281)
Q Consensus 128 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~----p----~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 199 (281)
|++++|.+++..+..+..+++|++|++++|.+.+.. | ..+..+++|+.|++++|+++...+..+..+++|++
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 888888887555566788888888888888876421 1 23678888999999999888433346889999999
Q ss_pred EEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCcccc-CCCCCCEEEcccCcccccCC
Q 038776 200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-NISSIQTFDVGSNYIEGEMP 260 (281)
Q Consensus 200 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~~p 260 (281)
|++++|.+++..+..+..+++|+.|++++|++++..+..+. .+++|+.|++++|++....+
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999976667788999999999999999977766676 68899999999999886544
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.4e-25 Score=196.59 Aligned_cols=200 Identities=22% Similarity=0.220 Sum_probs=144.2
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc-------------
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA------------- 141 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~------------- 141 (281)
++++.|++++|.+.+..|..|..+++|++|++++|.+.+..| +..+++|++|++++|.+++..+.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 356666777766665555566666677777777766664333 56666666666666655421110
Q ss_pred ---cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCcccc-CCCCCCeEEcccCCCcccccccCCC
Q 038776 142 ---SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLG-NLSSLRGLSLSRNGFYGSIPDTFGG 217 (281)
Q Consensus 142 ---~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~ 217 (281)
....+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.+++. |. ...
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~ 189 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVV 189 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-ccc
Confidence 012357788888888888877777788888888888888888877776665 688889999999888755 32 335
Q ss_pred CCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 218 LKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 218 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+.. +++|+.|++++|+++
T Consensus 190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF-SQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC-CTTCCEEECTTCCBC
T ss_pred CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhcc-CCCCCEEEcCCCCCc
Confidence 8889999999999885 4555888889999999999988 47766654 889999999999864
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=197.00 Aligned_cols=203 Identities=22% Similarity=0.239 Sum_probs=172.1
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCC--chhccCCCcccEeeccCCcccccCCccCcCCCCCcEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEI--PPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVV 152 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 152 (281)
++++.++++++.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+ +|..+..+++|++|
T Consensus 325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L 401 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401 (570)
T ss_dssp SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEE
Confidence 4455566666655544333 57789999999999987543 6788899999999999999984 45558999999999
Q ss_pred EcccCCCCCCCc-hhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCc-ccccccCCCCCCCCeEecccCc
Q 038776 153 SLALNHLAGKIP-SEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFY-GSIPDTFGGLKNLVNLSLVVNN 230 (281)
Q Consensus 153 ~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~ 230 (281)
++++|.+.+..| ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|+
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 999999986655 46889999999999999999888888999999999999999997 5789999999999999999999
Q ss_pred CcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 231 LSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 231 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|+++
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD-RLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCBC
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh-cccCCcEEEecCCccc
Confidence 9988899999999999999999999965554444 4999999999999874
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=9e-24 Score=176.47 Aligned_cols=181 Identities=22% Similarity=0.292 Sum_probs=161.2
Q ss_pred cCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCC
Q 038776 94 HIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKL 173 (281)
Q Consensus 94 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 173 (281)
.+..++++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++ ++.. +.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcC
Confidence 3677889999999999998 6776553 689999999999997778889999999999999999984 3433 789999
Q ss_pred CEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccC
Q 038776 174 QFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253 (281)
Q Consensus 174 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 253 (281)
+.|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 77888899999999999999999777788999999999999999999777777889999999999999
Q ss_pred cccccCChhhhhCCCCCcEEEcccccCC
Q 038776 254 YIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 254 ~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+++ .+|...+..+++|+.|++++|+++
T Consensus 159 ~l~-~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 159 NLT-ELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence 999 677777667999999999999875
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=9.5e-24 Score=177.84 Aligned_cols=190 Identities=22% Similarity=0.350 Sum_probs=159.9
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 678899999998874 44 5888999999999999998 4455 8999999999999999884 44 6889999999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+.+ ++. +..+++|+.|++++|.+++. +. +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 9999984 443 89999999999999999854 33 78899999999999999854 33 88899999999999999854
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+. +..+++|++|++++|.+++..+ +. .+++|+.|++++|+++
T Consensus 189 -~~-l~~l~~L~~L~L~~N~l~~~~~--l~-~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 189 -SP-LASLPNLIEVHLKNNQISDVSP--LA-NTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -GG-GGGCTTCCEEECTTSCCCBCGG--GT-TCTTCCEEEEEEEEEE
T ss_pred -hh-hcCCCCCCEEEccCCccCcccc--cc-CCCCCCEEEccCCeee
Confidence 33 7889999999999999985442 44 4999999999999863
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=8.2e-25 Score=185.12 Aligned_cols=192 Identities=22% Similarity=0.222 Sum_probs=139.1
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..+ +..+++|++|++++|.+.+ ++ ..++|++|++++|.+++..+. .+++|++|++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l 127 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYL 127 (317)
T ss_dssp TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEEC
T ss_pred CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEEC
Confidence 445555555555554332 5555555555555555542 11 225556666666655533222 3678899999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccc-cCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSL-GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 233 (281)
++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|.+++
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence 9999887666678889999999999999987666655 4688999999999998854 33 3358899999999999984
Q ss_pred CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 234 TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+|..+..+++|++|++++|.++ .+|..+.. +++|+.|++++|+++
T Consensus 206 -l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~-l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 206 -MGPEFQSAAGVTWISLRNNKLV-LIEKALRF-SQNLEHFDLRGNGFH 250 (317)
T ss_dssp -ECGGGGGGTTCSEEECTTSCCC-EECTTCCC-CTTCCEEECTTCCCB
T ss_pred -chhhhcccCcccEEECcCCccc-chhhHhhc-CCCCCEEEccCCCcc
Confidence 5566888999999999999998 67877655 899999999999874
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=7.7e-25 Score=198.39 Aligned_cols=181 Identities=21% Similarity=0.255 Sum_probs=107.6
Q ss_pred CCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeC
Q 038776 99 SFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLST 178 (281)
Q Consensus 99 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 178 (281)
++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|++++|.+.+..|..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 45666666666666555555666666666666666666555555666666666666666666544445666666666666
Q ss_pred cCCcccc-cCCccccCCCCCCeEEcccCCCccccc-ccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776 179 TANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256 (281)
Q Consensus 179 ~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 256 (281)
++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..++.+++|++|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 6666653 234455666666666666665333333 35556666666666666666555666666666666666666654
Q ss_pred ccCChhhhhCCCCCcEEEcccccC
Q 038776 257 GEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 257 ~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+|..+...+++|+.|++++|++
T Consensus 186 -~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 186 -FLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp -THHHHHHHSTTTBSEEEEESCBC
T ss_pred -ccchhhHhhcccccEEEccCCcc
Confidence 44444444456666666666654
No 63
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=7.3e-24 Score=201.14 Aligned_cols=205 Identities=21% Similarity=0.219 Sum_probs=138.4
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchh--ccCCCcccEeeccCCcccccCC-ccCcCCCCCcE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQ--IGHLRRLQILYLQINSFDGEIP-ASISNCSNLLV 151 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~ 151 (281)
.+++.|++++|.+.+..|..|..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+ ..++++++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 67889999999998888888999999999999999888766654 8889999999999998875544 56888888888
Q ss_pred EEcccCCCCCCCchhcCCC--------------------------CC------CCEEeCcCC------------------
Q 038776 152 VSLALNHLAGKIPSEFGSL--------------------------SK------LQFLSTTAN------------------ 181 (281)
Q Consensus 152 L~l~~n~~~~~~p~~~~~l--------------------------~~------L~~L~l~~n------------------ 181 (281)
|++++|.+.+..+..+..+ ++ |+.|++++|
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred EECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 8888887765444333211 11 444444444
Q ss_pred --------------------------------------------cccccCCccccCCCCCCeEEcccCCCcccccccCCC
Q 038776 182 --------------------------------------------NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGG 217 (281)
Q Consensus 182 --------------------------------------------~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 217 (281)
.+.+..|..+..+++|++|++++|.+++..|..+..
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC
Confidence 333333444455556666666666666555556666
Q ss_pred CCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 218 LKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 218 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+++|+.|++++|.+++..|..+..+++|++|++++|.+.+. +...+..+++|+.|++++|.+
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII-QDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC-CSSCSCSCCCCCEEEEETCCS
T ss_pred CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc-ChhhhcCCCCCCEEECCCCCC
Confidence 66666666666666655566666666666666666666533 333333366777777777665
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=6.3e-24 Score=193.12 Aligned_cols=159 Identities=23% Similarity=0.182 Sum_probs=120.4
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 56778888888888776777888888888888888887666677888888888888888887666677888888888888
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccc-cCCccccCCCCCCeEEcccCCCcccccccCCCCCCC----CeEecccC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL----VNLSLVVN 229 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L----~~L~l~~n 229 (281)
++|.+....+..++.+++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..++.+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 8888875444457888888888888888775 357778888888888888888776656555555555 56666666
Q ss_pred cCcC
Q 038776 230 NLSG 233 (281)
Q Consensus 230 ~~~~ 233 (281)
.+++
T Consensus 188 ~l~~ 191 (570)
T 2z63_A 188 PMNF 191 (570)
T ss_dssp CCCE
T ss_pred Ccee
Confidence 5543
No 65
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.91 E-value=1.4e-23 Score=189.64 Aligned_cols=196 Identities=21% Similarity=0.322 Sum_probs=164.6
Q ss_pred CCCCCCCCc-----cccce-eeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEe
Q 038776 55 SWNDSIHFC-----EWYGV-TCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQIL 128 (281)
Q Consensus 55 ~w~~~~~~c-----~~~g~-~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 128 (281)
.|.....+| .|.++ .|.. .+++.|+++++.+.+ +|..+. ++|++|++++|.+. .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 354444556 67887 5653 578999999999986 777663 78999999999998 777 468999999
Q ss_pred eccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCc
Q 038776 129 YLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFY 208 (281)
Q Consensus 129 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 208 (281)
++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 999999995 777 655 99999999999995 666 68999999999999985 665 5789999999999998
Q ss_pred ccccccCCCCCCCCeEecccCcCcCCCCccccCCCCC-------CEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 209 GSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSI-------QTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 209 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L-------~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..++. +++|+.|++++|+++
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLS 243 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCC
T ss_pred C-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCC
Confidence 5 776 65 89999999999999 6776 544 67 99999999999 79999988 999999999999985
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.7e-23 Score=190.32 Aligned_cols=158 Identities=22% Similarity=0.256 Sum_probs=132.3
Q ss_pred cCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCC--CCchhcCCCCCCCEEeCcCCcccccCCc-cccCCCC
Q 038776 120 GHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAG--KIPSEFGSLSKLQFLSTTANNLTGNIPS-SLGNLSS 196 (281)
Q Consensus 120 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~ 196 (281)
..+++|++|++++|.+++..|..+.++++|++|++++|++++ ..|..+..+++|+.|++++|.+++.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 577889999999999887788888899999999999998885 2345688899999999999999875554 4777889
Q ss_pred CCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcc
Q 038776 197 LRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT 276 (281)
Q Consensus 197 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 276 (281)
|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|...+..+++|+.|+++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 99999999998877776654 78999999999998 67877779999999999999998 6787744559999999999
Q ss_pred cccCC
Q 038776 277 GNQFT 281 (281)
Q Consensus 277 ~N~l~ 281 (281)
+|+++
T Consensus 506 ~N~~~ 510 (562)
T 3a79_B 506 DNPWD 510 (562)
T ss_dssp SCCBC
T ss_pred CCCcC
Confidence 99874
No 67
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=5.8e-23 Score=175.68 Aligned_cols=174 Identities=21% Similarity=0.329 Sum_probs=110.6
Q ss_pred CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 174 (281)
+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ .+. +..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~ 246 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIE-DISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLT 246 (347)
T ss_dssp GGGCTTCSEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred hccCCCCCEEEccCCccc-cccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCC
Confidence 334444444444444443 2222 44445555555555544422 22 5566777777777777763 333 67777777
Q ss_pred EEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCc
Q 038776 175 FLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254 (281)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 254 (281)
.|++++|.+++. ..+..+++|++|++++|.+++. +.+..+++|+.|++++|.+++..+..+..+++|++|++++|+
T Consensus 247 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred EEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 777777777642 4566777788888888877643 346677888888888888877777777788888888888888
Q ss_pred ccccCChhhhhCCCCCcEEEcccccCC
Q 038776 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 255 l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+++..| +.. +++|+.|++++|+|+
T Consensus 323 l~~~~~--~~~-l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 ITDIRP--LAS-LSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCGG--GGG-CTTCSEESSSCC---
T ss_pred cccccC--hhh-hhccceeehhhhccc
Confidence 875444 443 788888888888764
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.9e-23 Score=169.67 Aligned_cols=185 Identities=18% Similarity=0.238 Sum_probs=156.7
Q ss_pred ecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCc-ccccCCccCcCCCCCcEEEccc-CCCCCCCchhc
Q 038776 90 TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS-FDGEIPASISNCSNLLVVSLAL-NHLAGKIPSEF 167 (281)
Q Consensus 90 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~ 167 (281)
.+|. +. +.+++|++++|.+++..+..|..+++|++|++++|. +++..+..+.++++|++|++++ |.++...+..+
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 43 489999999999997666789999999999999997 8755556889999999999998 99996666778
Q ss_pred CCCCCCCEEeCcCCcccccCCccccCCCCCC---eEEcccC-CCcccccccCCCCCCCC-eEecccCcCcCCCCccccCC
Q 038776 168 GSLSKLQFLSTTANNLTGNIPSSLGNLSSLR---GLSLSRN-GFYGSIPDTFGGLKNLV-NLSLVVNNLSGTIPPLIFNI 242 (281)
Q Consensus 168 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~~ 242 (281)
..+++|+.|++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ .|++++|.++ .+|......
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~ 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence 999999999999999985 666 88888888 9999999 88866667799999999 9999999998 555544444
Q ss_pred CCCCEEEcccCc-ccccCChhhhhCC-CCCcEEEcccccCC
Q 038776 243 SSIQTFDVGSNY-IEGEMPLDLGTTL-PNLRIFSITGNQFT 281 (281)
Q Consensus 243 ~~L~~L~l~~n~-l~~~~p~~~~~~~-~~L~~L~l~~N~l~ 281 (281)
++|+.|++++|+ ++ .+|...+..+ ++|+.|++++|+++
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccc
Confidence 899999999995 88 5665555558 99999999999875
No 69
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=4.8e-22 Score=169.99 Aligned_cols=195 Identities=23% Similarity=0.345 Sum_probs=129.7
Q ss_pred CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776 74 HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 74 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 153 (281)
.++++.|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+ .+. +..+++|++|+
T Consensus 109 l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~ 183 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLS 183 (347)
T ss_dssp CTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEE
T ss_pred CCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEE
Confidence 36777888888777643 22 6666777777777765442332 25555566666665555542 221 44455555555
Q ss_pred cccCCCCCC---------------------CchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc
Q 038776 154 LALNHLAGK---------------------IPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP 212 (281)
Q Consensus 154 l~~n~~~~~---------------------~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 212 (281)
+++|.+.+. .+. +..+++|+.|++++|.+++. +. +..+++|++|++++|.+++ +
T Consensus 184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~- 258 (347)
T 4fmz_A 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I- 258 (347)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-
T ss_pred ccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-
Confidence 555544421 111 56667777777777777643 33 6777888888888887774 2
Q ss_pred ccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 213 DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+.+..+++|+.|++++|.+++ + ..+..+++|++|++++|.+++..|..+.. +++|+.|++++|+++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHIT 324 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHT-CTTCSEEECCSSSCC
T ss_pred hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhc-cccCCEEEccCCccc
Confidence 457778888888888888875 3 45778889999999999988666665655 899999999999874
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=2.8e-23 Score=175.64 Aligned_cols=193 Identities=18% Similarity=0.145 Sum_probs=164.0
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence 578999999999997777789999999999999999985444 8899999999999999883 33 3489999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccC-CCCCCCCeEecccCcCcC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF-GGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~ 233 (281)
++|.+.+..+ ..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus 107 ~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 9999985443 346889999999999997777788889999999999999997777666 478999999999999985
Q ss_pred CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 234 TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
. +. ...+++|++|++++|.++ .+|..+.. +++|+.|++++|+++
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 184 V-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV 227 (317)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCC-EECGGGGG-GTTCSEEECTTSCCC
T ss_pred c-cc-ccccccCCEEECCCCcCC-cchhhhcc-cCcccEEECcCCccc
Confidence 4 33 335899999999999999 56666665 999999999999875
No 71
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=3e-22 Score=178.03 Aligned_cols=189 Identities=24% Similarity=0.352 Sum_probs=126.2
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+.+..+ +..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 445555555555554322 4455666666666666552 2 345666677777777776663322 666777777777
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+.+. +. +..+++|+.|++++|++.+..+ +..+++|++|++++|.+++..| +..+++|+.|++++|.+++.
T Consensus 273 ~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 273 GANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 77777643 33 6677777777777777764322 5677778888888887775554 56777888888888877753
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
..+..+++|+.|++++|++++..| +.. +++|+.|++++|++
T Consensus 347 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 347 --SSLANLTNINWLSAGHNQISDLTP--LAN-LTRITQLGLNDQAW 387 (466)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGG--GTT-CTTCCEEECCCEEE
T ss_pred --hhhccCCCCCEEeCCCCccCccch--hhc-CCCCCEEeccCCcc
Confidence 467778888888888888886655 443 88888888888865
No 72
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.6e-22 Score=160.76 Aligned_cols=182 Identities=22% Similarity=0.233 Sum_probs=133.7
Q ss_pred CccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc
Q 038776 62 FCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA 141 (281)
Q Consensus 62 ~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 141 (281)
.|.|.++.|.. +++. .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 6 ~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70 (208)
T ss_dssp EEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred EECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence 36777777753 2222 233333 35778888888888755555677888888888888888744445
Q ss_pred cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCC
Q 038776 142 SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL 221 (281)
Q Consensus 142 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 221 (281)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 56788888888888888885555557788888888888888875555567788888888888888886666667788888
Q ss_pred CeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhh
Q 038776 222 VNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGT 265 (281)
Q Consensus 222 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~ 265 (281)
+.|++++|.+.+ .+++|+.|++..|.++|.+|..+..
T Consensus 151 ~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 151 QYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred cEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcc
Confidence 888888887764 3457788888888888888876654
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.3e-24 Score=187.23 Aligned_cols=208 Identities=20% Similarity=0.284 Sum_probs=167.5
Q ss_pred CCcEEEEEcCCCC---cceecCccC-------cCCCCCCEEECCCCCCcc----CCchhccCCCcccEeeccCCcccccC
Q 038776 74 HQRVTILDLQNLK---LAGTLPPHI-------GNLSFLQKLDLRNNSFTN----EIPPQIGHLRRLQILYLQINSFDGEI 139 (281)
Q Consensus 74 ~~~l~~l~l~~~~---l~~~~~~~~-------~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~ 139 (281)
.++++.|+++++. +.+.+|..+ ..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 4788999998863 444455444 688999999999999986 46778889999999999999987433
Q ss_pred Cc----cCcCC---------CCCcEEEcccCCCC-CCCc---hhcCCCCCCCEEeCcCCcccc-----cCCccccCCCCC
Q 038776 140 PA----SISNC---------SNLLVVSLALNHLA-GKIP---SEFGSLSKLQFLSTTANNLTG-----NIPSSLGNLSSL 197 (281)
Q Consensus 140 p~----~l~~l---------~~L~~L~l~~n~~~-~~~p---~~~~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~~L 197 (281)
+. .+..+ ++|++|++++|.++ ..++ ..+..+++|+.|++++|.+.. ..+..+..+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 33 33334 89999999999997 3444 457788999999999999873 233477889999
Q ss_pred CeEEcccCCCc----ccccccCCCCCCCCeEecccCcCcCC----CCcccc--CCCCCCEEEcccCcccc----cCChhh
Q 038776 198 RGLSLSRNGFY----GSIPDTFGGLKNLVNLSLVVNNLSGT----IPPLIF--NISSIQTFDVGSNYIEG----EMPLDL 263 (281)
Q Consensus 198 ~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~--~~~~L~~L~l~~n~l~~----~~p~~~ 263 (281)
++|++++|.++ +.+|..+..+++|+.|++++|.+++. ++..+. .+++|++|++++|.+++ .+|..+
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 99999999996 56788888999999999999999854 456663 48999999999999997 488887
Q ss_pred hhCCCCCcEEEcccccCC
Q 038776 264 GTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 264 ~~~~~~L~~L~l~~N~l~ 281 (281)
..++++|+.|++++|+++
T Consensus 299 ~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHCTTCCEEECTTSBSC
T ss_pred HhcCCCceEEEccCCcCC
Confidence 565899999999999875
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7.8e-24 Score=180.27 Aligned_cols=202 Identities=21% Similarity=0.257 Sum_probs=156.9
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccC-CchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEE
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNE-IPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVS 153 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 153 (281)
.+++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5677888888888766554 55788899999999887754 777788889999999999988877777788889999999
Q ss_pred cccC-CCCC-CCchhcCCCCCCCEEeCcCC-ccccc-CCccccCCC-CCCeEEcccC--CCc-ccccccCCCCCCCCeEe
Q 038776 154 LALN-HLAG-KIPSEFGSLSKLQFLSTTAN-NLTGN-IPSSLGNLS-SLRGLSLSRN--GFY-GSIPDTFGGLKNLVNLS 225 (281)
Q Consensus 154 l~~n-~~~~-~~p~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L~ 225 (281)
+++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9988 5664 25666778889999999988 77754 456677788 8999999988 454 45666677788999999
Q ss_pred cccCc-CcCCCCccccCCCCCCEEEcccCc-ccccCChhhhhCCCCCcEEEcccc
Q 038776 226 LVVNN-LSGTIPPLIFNISSIQTFDVGSNY-IEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 226 l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
+++|. +++..+..+..+++|++|++++|. +.......+.. +++|+.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc
Confidence 99888 666667788888899999999884 43332224444 888999998887
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=8.3e-23 Score=182.44 Aligned_cols=194 Identities=16% Similarity=0.150 Sum_probs=149.0
Q ss_pred cCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCC
Q 038776 82 LQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAG 161 (281)
Q Consensus 82 l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~ 161 (281)
+....+...+.......++|++|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++
T Consensus 17 ~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 94 (487)
T 3oja_A 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94 (487)
T ss_dssp CCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE
T ss_pred CchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC
Confidence 33333433333333445589999999999998788899999999999999999986555 8889999999999887763
Q ss_pred CCch----------------hcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCC-CCCCCCeE
Q 038776 162 KIPS----------------EFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFG-GLKNLVNL 224 (281)
Q Consensus 162 ~~p~----------------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L 224 (281)
..+. ....+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|
T Consensus 95 l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 95 LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp EEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 2111 012356788888888888877777788888899999999988877777765 68889999
Q ss_pred ecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 225 SLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 225 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
++++|.+++. | ....+++|++|++++|.+++ +|..+.. +++|+.|++++|.++
T Consensus 175 ~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~-l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 175 NLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQS-AAGVTWISLRNNKLV 227 (487)
T ss_dssp ECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGG-GTTCSEEECTTSCCC
T ss_pred ecCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcC-CCCccEEEecCCcCc
Confidence 9999988854 3 23358899999999999985 5555655 899999999999874
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6.4e-23 Score=172.91 Aligned_cols=202 Identities=20% Similarity=0.224 Sum_probs=163.6
Q ss_pred CcEEEEEcCCCCcceec-Cc--cCcCCCCCCEEECCCCCCccCCchhc--cCCCcccEeeccCCcccccCC----ccCcC
Q 038776 75 QRVTILDLQNLKLAGTL-PP--HIGNLSFLQKLDLRNNSFTNEIPPQI--GHLRRLQILYLQINSFDGEIP----ASISN 145 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~-~~--~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p----~~l~~ 145 (281)
.+++.+.+.++.+.... .. .+..++.|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34667777777664321 10 12234679999999999998888887 899999999999999986544 34557
Q ss_pred CCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCccccc--C--CccccCCCCCCeEEcccCCCcccccc----cCCC
Q 038776 146 CSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGN--I--PSSLGNLSSLRGLSLSRNGFYGSIPD----TFGG 217 (281)
Q Consensus 146 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~~~----~~~~ 217 (281)
+++|++|++++|.+.+..+..++.+++|++|++++|++.+. + +..+..+++|++|++++|.++ .++. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 99999999999999987788899999999999999998642 2 233468899999999999997 3333 2467
Q ss_pred CCCCCeEecccCcCcCCCCccccCC---CCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 218 LKNLVNLSLVVNNLSGTIPPLIFNI---SSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 218 l~~L~~L~l~~n~~~~~~~~~l~~~---~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+ +++|+.|++++|+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~---~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL---PAKLRVLDLSSNRLN 285 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC---CSCCSCEECCSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh---cCCCCEEECCCCcCC
Confidence 8999999999999998778777776 69999999999999 788766 379999999999875
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=6.7e-22 Score=157.10 Aligned_cols=175 Identities=21% Similarity=0.181 Sum_probs=145.6
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|+++++.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 67899999999998766666889999999999999999666667889999999999999999555556789999999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|++..|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 9999996666668999999999999999986655668889999999999997763 456899999999999999
Q ss_pred CCccccCCCCCCEEEcccCcccccCC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMP 260 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p 260 (281)
+|..++.++. +...|...+..+
T Consensus 181 ip~~~~~l~~----~~~~C~~~~~~~ 202 (208)
T 2o6s_A 181 VRNSAGSVAP----DSAKCSGSGKPV 202 (208)
T ss_dssp BBCTTSSBCT----TCSBBTTTCCBG
T ss_pred eeccCccccC----CccccccCCCcc
Confidence 9988887654 344444443333
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=3.2e-21 Score=170.84 Aligned_cols=182 Identities=19% Similarity=0.177 Sum_probs=108.0
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+.+. + ++.+++|++|++++|.+.+ ++ ++.+++|++|++++|.+++ +| ++.+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 5566666666666642 2 5666666666666666663 22 5666666666666666663 33 566666666666
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+++. + ++.+++|+.|++++|...+.+ .+..+++|++|++++|.+++ +| ++.+++|+.|++++|.+++.
T Consensus 135 ~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 135 ARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp TTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence 66666642 2 555566666666665443333 24555666666666666654 33 55556666666666666542
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.++.+++|++|++++|.+++ +| +.. +++|+.|++++|++
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~-l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTP-LTQLTYFDCSVNPL 245 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSC-CC--CTT-CTTCSEEECCSSCC
T ss_pred ---ccccCCCCCEEECcCCcccc-cC--ccc-cCCCCEEEeeCCcC
Confidence 25556666666666666664 44 322 66666666666655
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=4.1e-21 Score=170.13 Aligned_cols=184 Identities=18% Similarity=0.226 Sum_probs=161.1
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|+++++.+.+. | .+..+++|++|++++|.+.+ +| ++.+++|++|++++|.+++ ++ ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEEC
Confidence 6789999999999864 5 68899999999999999985 44 8899999999999999985 44 889999999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+++ +| ++.+++|+.|++++|.+++. + ++.+++|++|++++|...+.+ .++.+++|+.|++++|++++
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 9999985 44 88999999999999999863 3 788999999999999766565 47789999999999999996
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+| +..+++|+.|++++|.+++. + +.. +++|+.|++++|+++
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~-~--l~~-l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL-D--LNQ-NIQLTFLDCSSNKLT 225 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC-C--CTT-CTTCSEEECCSSCCS
T ss_pred ec--cccCCCCCEEECcCCcCCee-c--ccc-CCCCCEEECcCCccc
Confidence 55 78899999999999999853 3 444 899999999999875
No 80
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=3.2e-21 Score=171.44 Aligned_cols=190 Identities=28% Similarity=0.395 Sum_probs=142.1
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|+++++.+.+. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+++ + ..+..+++|++|++
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEEC
Confidence 5677777777776642 236677788888888887774433 6677888888888887763 3 35677888888888
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+.+..+ +..+++|+.|++++|.+++.. . +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.
T Consensus 251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLTKLTELKLGANQISNIS-P-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-G-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred CCCccccchh--hhcCCCCCEEECCCCccCccc-c-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence 8888874433 778888888888888887543 3 7778888888888888875443 67788888888888888865
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.| +..+++|+.|++++|.+++. + .+.. +++|+.|++++|+++
T Consensus 325 ~~--~~~l~~L~~L~l~~n~l~~~-~-~l~~-l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 325 SP--VSSLTKLQRLFFYNNKVSDV-S-SLAN-LTNINWLSAGHNQIS 366 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC-G-GGTT-CTTCCEEECCSSCCC
T ss_pred hh--hccCccCCEeECCCCccCCc-h-hhcc-CCCCCEEeCCCCccC
Confidence 44 67888899999999988853 3 4444 889999999998864
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=5.6e-22 Score=182.14 Aligned_cols=201 Identities=20% Similarity=0.164 Sum_probs=138.5
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
..++.|++++|.+++..+..|..+++|++|++++|.+.+..+.+|.++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46778888888887666667888888888888888887666667888888888888888887444456778888888888
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccc-cCCccccCCCCCCeEEcccCCCcccccccCCCCCC----CCeEecccC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTG-NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKN----LVNLSLVVN 229 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~----L~~L~l~~n 229 (281)
++|++++..+..++.+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+.+ ...++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 8888875555567788888888888887764 34666777788888888888887666666554433 335677777
Q ss_pred cCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcc
Q 038776 230 NLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT 276 (281)
Q Consensus 230 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 276 (281)
.+....+ .......+..+++.+|.....++...+..++.++...+.
T Consensus 212 ~l~~i~~-~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 212 PMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp CCCEECT-TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred cccccCc-ccccchhhhhhhhhcccccccccchhhcCCccccccccc
Confidence 7764333 333334566777777765544444444446666555543
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.2e-24 Score=180.89 Aligned_cols=212 Identities=18% Similarity=0.219 Sum_probs=177.7
Q ss_pred CCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCC--CCCCEEECCCCCCccCCchhccCCCcccEeeccCCccccc
Q 038776 61 HFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNL--SFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGE 138 (281)
Q Consensus 61 ~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 138 (281)
.|..|.++.+.+ ..++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 456788877654 34678999998776 3445555 7899999999999866555 56899999999999998765
Q ss_pred -CCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC-ccccc-CCccccCCCCCCeEEcccC-CCccc-ccc
Q 038776 139 -IPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN-NLTGN-IPSSLGNLSSLRGLSLSRN-GFYGS-IPD 213 (281)
Q Consensus 139 -~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~~ 213 (281)
++..+..+++|++|++++|.+.+..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++.
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 7778899999999999999998888888999999999999999 67653 5666788999999999999 88754 677
Q ss_pred cCCCCC-CCCeEecccC--cCc-CCCCccccCCCCCCEEEcccCc-ccccCChhhhhCCCCCcEEEccccc
Q 038776 214 TFGGLK-NLVNLSLVVN--NLS-GTIPPLIFNISSIQTFDVGSNY-IEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 214 ~~~~l~-~L~~L~l~~n--~~~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
.+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+.. +++|+.|++++|.
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~ 258 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCT
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCC
Confidence 788889 9999999999 455 4567788889999999999998 77777777776 8999999999994
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.1e-21 Score=161.70 Aligned_cols=172 Identities=26% Similarity=0.368 Sum_probs=147.7
Q ss_pred CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 174 (281)
...+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence 345789999999999988 455 5889999999999999998 4555 8999999999999999984 44 689999999
Q ss_pred EEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCc
Q 038776 175 FLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254 (281)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 254 (281)
.|++++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 99999999985 33 38899999999999999985443 7889999999999999985 444 8899999999999999
Q ss_pred ccccCChhhhhCCCCCcEEEcccccCC
Q 038776 255 IEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 255 l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+++ ++. +.. +++|+.|++++|+++
T Consensus 185 l~~-~~~-l~~-l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 185 ISD-ISP-LAS-LPNLIEVHLKNNQIS 208 (308)
T ss_dssp CCC-CGG-GGG-CTTCCEEECTTSCCC
T ss_pred cCc-Chh-hcC-CCCCCEEEccCCccC
Confidence 984 443 444 999999999999874
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.4e-23 Score=182.18 Aligned_cols=207 Identities=15% Similarity=0.190 Sum_probs=167.2
Q ss_pred CcEEEEEcCCCCccee----cCccCcCCCCCCEEECCCCC---CccCCchhc-------cCCCcccEeeccCCcccc---
Q 038776 75 QRVTILDLQNLKLAGT----LPPHIGNLSFLQKLDLRNNS---FTNEIPPQI-------GHLRRLQILYLQINSFDG--- 137 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~---~~~~~~~~~-------~~l~~L~~L~l~~n~~~~--- 137 (281)
++++.|++++|.+.+. ++..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++|.+.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 6689999999988765 34457789999999999964 445566555 689999999999999986
Q ss_pred -cCCccCcCCCCCcEEEcccCCCCCCCchhc----CCC---------CCCCEEeCcCCccc-ccCC---ccccCCCCCCe
Q 038776 138 -EIPASISNCSNLLVVSLALNHLAGKIPSEF----GSL---------SKLQFLSTTANNLT-GNIP---SSLGNLSSLRG 199 (281)
Q Consensus 138 -~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~----~~l---------~~L~~L~l~~n~~~-~~~~---~~l~~l~~L~~ 199 (281)
.+|..+..+++|++|++++|.++...+..+ ..+ ++|++|++++|.+. +..+ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 467788899999999999999874434333 333 89999999999997 3344 45667899999
Q ss_pred EEcccCCCcc-----cccccCCCCCCCCeEecccCcCc----CCCCccccCCCCCCEEEcccCccccc----CChhhh-h
Q 038776 200 LSLSRNGFYG-----SIPDTFGGLKNLVNLSLVVNNLS----GTIPPLIFNISSIQTFDVGSNYIEGE----MPLDLG-T 265 (281)
Q Consensus 200 L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~l~~~~~L~~L~l~~n~l~~~----~p~~~~-~ 265 (281)
|++++|+++. ..|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ++..+. .
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 9999999973 34547888999999999999996 56788889999999999999999865 344432 1
Q ss_pred CCCCCcEEEcccccCC
Q 038776 266 TLPNLRIFSITGNQFT 281 (281)
Q Consensus 266 ~~~~L~~L~l~~N~l~ 281 (281)
.+++|+.|++++|+++
T Consensus 272 ~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIE 287 (386)
T ss_dssp SSCCCCEEECCSSCCB
T ss_pred cCCCeEEEECcCCcCC
Confidence 2799999999999874
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.87 E-value=3.4e-21 Score=160.95 Aligned_cols=169 Identities=25% Similarity=0.361 Sum_probs=138.8
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.++++++.+... + .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 5678899999888743 3 47788999999999999884 444 8889999999999998873 44 4888999999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence 9999874 3 4688889999999999998754 567888999999999999886544 7888999999999999884
Q ss_pred CCccccCCCCCCEEEcccCcccc
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEG 257 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~ 257 (281)
++ .+..+++|+.|++++|++++
T Consensus 193 l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred Ch-hhccCCCCCEEECcCCcccC
Confidence 44 47888999999999998874
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=4.7e-21 Score=175.96 Aligned_cols=205 Identities=22% Similarity=0.253 Sum_probs=161.9
Q ss_pred CcEEEEEcCCCCcc--eecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC-ccCcCCCCCcE
Q 038776 75 QRVTILDLQNLKLA--GTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP-ASISNCSNLLV 151 (281)
Q Consensus 75 ~~l~~l~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~ 151 (281)
+.++.++++.+.+. +..+..+..+..|+++++..+... ..+..+..+++|+.+++..+......+ ..+..+++++.
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccccc
Confidence 34455555555443 223333445555666666665554 334456677788888887776654333 45778899999
Q ss_pred EEcccCCCCCCCchhcCCCCCCCEEeCcCCccc-ccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCc
Q 038776 152 VSLALNHLAGKIPSEFGSLSKLQFLSTTANNLT-GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN 230 (281)
Q Consensus 152 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 230 (281)
++++.|.+.+..+..+..+++++.|++++|... +..|..+..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus 450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~ 529 (635)
T 4g8a_A 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529 (635)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc
Confidence 999999999888888899999999999999754 4567889999999999999999998889999999999999999999
Q ss_pred CcCCCCccccCCCCCCEEEcccCcccccCChhhhhCC-CCCcEEEcccccCC
Q 038776 231 LSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTL-PNLRIFSITGNQFT 281 (281)
Q Consensus 231 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~-~~L~~L~l~~N~l~ 281 (281)
+++..|..+..+++|++|++++|++++..|..+.. + ++|+.|++++|+|+
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC-CCTTCCEEECTTCCBC
T ss_pred CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh-hhCcCCEEEeeCCCCc
Confidence 99888888999999999999999999777776665 5 68999999999985
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=3.5e-21 Score=165.65 Aligned_cols=175 Identities=22% Similarity=0.221 Sum_probs=130.1
Q ss_pred EEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhcc-CCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776 79 ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG-HLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN 157 (281)
Q Consensus 79 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 157 (281)
.++.+++++. .+|..+. +.++.|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5677777776 4565553 4578899999988866666676 8888888888888888666677888888888888888
Q ss_pred CCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccC---CCCCCCCeEecccCcCcCC
Q 038776 158 HLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTF---GGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 158 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~ 234 (281)
++....+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8886556667888888888888888886667778888888888888888874433334 4577888888888888754
Q ss_pred CCccccCCCC--CCEEEcccCccc
Q 038776 235 IPPLIFNISS--IQTFDVGSNYIE 256 (281)
Q Consensus 235 ~~~~l~~~~~--L~~L~l~~n~l~ 256 (281)
.+..+..++. ++.|++++|++.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 4455666655 367788887775
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=8.4e-23 Score=175.86 Aligned_cols=205 Identities=18% Similarity=0.210 Sum_probs=159.8
Q ss_pred CcEEEEEcCCCCcceecC----ccCcCCC-CCCEEECCCCCCccCCchhccCC-----CcccEeeccCCcccccCCcc--
Q 038776 75 QRVTILDLQNLKLAGTLP----PHIGNLS-FLQKLDLRNNSFTNEIPPQIGHL-----RRLQILYLQINSFDGEIPAS-- 142 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~p~~-- 142 (281)
.+++.|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 559999999999986555 5677888 89999999999997777777765 99999999999998655543
Q ss_pred --CcCC-CCCcEEEcccCCCCCCCchhc----CC-CCCCCEEeCcCCcccccC----CccccCCC-CCCeEEcccCCCcc
Q 038776 143 --ISNC-SNLLVVSLALNHLAGKIPSEF----GS-LSKLQFLSTTANNLTGNI----PSSLGNLS-SLRGLSLSRNGFYG 209 (281)
Q Consensus 143 --l~~l-~~L~~L~l~~n~~~~~~p~~~----~~-l~~L~~L~l~~n~~~~~~----~~~l~~l~-~L~~L~l~~n~~~~ 209 (281)
+..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+.. +..+...+ +|++|++++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3444 899999999999987666543 34 369999999999998533 33445555 99999999999986
Q ss_pred cccccC----CCC-CCCCeEecccCcCcCC----CCccccC-CCCCCEEEcccCcccccCChh---hhhCCCCCcEEEcc
Q 038776 210 SIPDTF----GGL-KNLVNLSLVVNNLSGT----IPPLIFN-ISSIQTFDVGSNYIEGEMPLD---LGTTLPNLRIFSIT 276 (281)
Q Consensus 210 ~~~~~~----~~l-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L~~L~l~~n~l~~~~p~~---~~~~~~~L~~L~l~ 276 (281)
..+..+ ... ++|+.|++++|.+++. ++..+.. .++|++|++++|.+++..+.. ++..+++|+.|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 665433 344 5999999999999853 4455555 458999999999998655533 33457899999999
Q ss_pred ccc
Q 038776 277 GNQ 279 (281)
Q Consensus 277 ~N~ 279 (281)
+|.
T Consensus 262 ~n~ 264 (362)
T 3goz_A 262 YDI 264 (362)
T ss_dssp HHH
T ss_pred cCC
Confidence 997
No 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=9.9e-21 Score=151.68 Aligned_cols=153 Identities=27% Similarity=0.278 Sum_probs=133.9
Q ss_pred CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC
Q 038776 102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN 181 (281)
Q Consensus 102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 181 (281)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 67889999888 6777554 68999999999999666668899999999999999999877888999999999999999
Q ss_pred cccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccc
Q 038776 182 NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257 (281)
Q Consensus 182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 257 (281)
.++...+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9985544567889999999999999998888889999999999999999997777778889999999999998864
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=2e-20 Score=150.86 Aligned_cols=165 Identities=25% Similarity=0.282 Sum_probs=135.3
Q ss_pred CCCCCCCCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCc
Q 038776 55 SWNDSIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS 134 (281)
Q Consensus 55 ~w~~~~~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 134 (281)
.|......|.|.++.|.. +++. .+|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 455566789988888854 2233 4455443 789999999999998778889999999999999999
Q ss_pred ccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccccc
Q 038776 135 FDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDT 214 (281)
Q Consensus 135 ~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 214 (281)
+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 98444456789999999999999999666666889999999999999998 77888889999999999999998666677
Q ss_pred CCCCCCCCeEecccCcCcCCC
Q 038776 215 FGGLKNLVNLSLVVNNLSGTI 235 (281)
Q Consensus 215 ~~~l~~L~~L~l~~n~~~~~~ 235 (281)
+..+++|+.|++++|.+....
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTB
T ss_pred HhCCCCCCEEEeeCCCccCCc
Confidence 888999999999999887554
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=2e-20 Score=149.87 Aligned_cols=152 Identities=22% Similarity=0.258 Sum_probs=134.5
Q ss_pred EEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCC
Q 038776 79 ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNH 158 (281)
Q Consensus 79 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 158 (281)
.++.+++++. .+|..+. +.+++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4566677776 5566554 689999999999997777789999999999999999998889999999999999999999
Q ss_pred CCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776 159 LAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 159 ~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 233 (281)
++...+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 995555557899999999999999998888899999999999999999997777789999999999999999874
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=149.81 Aligned_cols=154 Identities=27% Similarity=0.305 Sum_probs=131.1
Q ss_pred EEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCc-hhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776 79 ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP-PQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN 157 (281)
Q Consensus 79 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 157 (281)
.++++++.+. .+|..+. ..+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 6788888877 4666553 456899999999986544 45889999999999999999766778999999999999999
Q ss_pred CCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCC
Q 038776 158 HLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235 (281)
Q Consensus 158 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 235 (281)
.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 999777777899999999999999999777888889999999999999999777888999999999999999887543
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.85 E-value=3.5e-20 Score=149.40 Aligned_cols=156 Identities=25% Similarity=0.254 Sum_probs=134.3
Q ss_pred CCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776 101 LQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 101 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 180 (281)
-+.++.+++.+. .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467899988887 6776543 8899999999999977788899999999999999999855556678999999999999
Q ss_pred CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCC
Q 038776 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMP 260 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p 260 (281)
|.+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9998666666788999999999999998 788888899999999999999996666778889999999999999885543
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=150.38 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=137.9
Q ss_pred CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCC-ccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776 102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIP-ASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 180 (281)
+.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 68999999988 6777553 457899999999996544 4578999999999999999977777899999999999999
Q ss_pred CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCC
Q 038776 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMP 260 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p 260 (281)
|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|++|++++|++....+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99997767778999999999999999998888999999999999999999998878999999999999999999986555
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.85 E-value=7e-21 Score=149.96 Aligned_cols=152 Identities=16% Similarity=0.242 Sum_probs=98.0
Q ss_pred cCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCe
Q 038776 120 GHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRG 199 (281)
Q Consensus 120 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 199 (281)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556666666666665 444 4566666666666666443 2335666667777777777666555666667777777
Q ss_pred EEcccCCCcccccccCCCCCCCCeEecccCc-CcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776 200 LSLSRNGFYGSIPDTFGGLKNLVNLSLVVNN-LSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 200 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
|++++|.+++..|..+..+++|+.|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+.. +++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~-l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIED-FPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGG-CSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hhcc-CCCCCEEEeeCc
Confidence 7777777766566666777777777777776 44 444 56677777777777777763 44 3444 777777777777
Q ss_pred cC
Q 038776 279 QF 280 (281)
Q Consensus 279 ~l 280 (281)
++
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 65
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.3e-22 Score=174.69 Aligned_cols=205 Identities=19% Similarity=0.238 Sum_probs=156.1
Q ss_pred cEEEEEcCCCCcceecCccCcCC-----CCCCEEECCCCCCccCCchhcc----CC-CcccEeeccCCcccccCCccC--
Q 038776 76 RVTILDLQNLKLAGTLPPHIGNL-----SFLQKLDLRNNSFTNEIPPQIG----HL-RRLQILYLQINSFDGEIPASI-- 143 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~p~~l-- 143 (281)
+++.|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..+. .+ ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 79999999999987666666554 8999999999999877666444 44 899999999999985544333
Q ss_pred --cC-CCCCcEEEcccCCCCCCCch----hcCCCC-CCCEEeCcCCcccccCCcc----ccCC-CCCCeEEcccCCCccc
Q 038776 144 --SN-CSNLLVVSLALNHLAGKIPS----EFGSLS-KLQFLSTTANNLTGNIPSS----LGNL-SSLRGLSLSRNGFYGS 210 (281)
Q Consensus 144 --~~-l~~L~~L~l~~n~~~~~~p~----~~~~l~-~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~~ 210 (281)
.. .++|++|++++|.++...+. .+...+ +|+.|++++|.+++..+.. +... ++|++|++++|.+++.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 34 36999999999999865443 345555 9999999999998665543 3444 5999999999999853
Q ss_pred ----ccccCCC-CCCCCeEecccCcCcCCCC----ccccCCCCCCEEEcccCcccccCCh-------hhhhCCCCCcEEE
Q 038776 211 ----IPDTFGG-LKNLVNLSLVVNNLSGTIP----PLIFNISSIQTFDVGSNYIEGEMPL-------DLGTTLPNLRIFS 274 (281)
Q Consensus 211 ----~~~~~~~-l~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~l~~~~p~-------~~~~~~~~L~~L~ 274 (281)
++..+.. .++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+. .+. .+++|+.||
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~-~l~~L~~Ld 290 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP-NIQKIILVD 290 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST-TCCEEEEEC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc-cCCceEEEe
Confidence 4455544 4699999999999986443 3456778999999999985532222 222 377899999
Q ss_pred cccccCC
Q 038776 275 ITGNQFT 281 (281)
Q Consensus 275 l~~N~l~ 281 (281)
+++|++.
T Consensus 291 L~~N~l~ 297 (362)
T 3goz_A 291 KNGKEIH 297 (362)
T ss_dssp TTSCBCC
T ss_pred cCCCcCC
Confidence 9999874
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=3.6e-20 Score=154.71 Aligned_cols=171 Identities=24% Similarity=0.327 Sum_probs=135.7
Q ss_pred CcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCC
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQ 174 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 174 (281)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ +..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC--GGGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC--ChhhccCCCCC
Confidence 345678899999998887 344 47888899999999998884 444 7888999999999998874 33488889999
Q ss_pred EEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCc
Q 038776 175 FLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254 (281)
Q Consensus 175 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 254 (281)
.|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999999988743 5677888999999999988754 567788899999999998885433 7888899999999998
Q ss_pred ccccCChhhhhCCCCCcEEEcccccC
Q 038776 255 IEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 255 l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++ .++. +.. +++|+.|++++|++
T Consensus 190 i~-~l~~-l~~-l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 IS-DLRA-LAG-LKNLDVLELFSQEC 212 (291)
T ss_dssp CC-BCGG-GTT-CTTCSEEEEEEEEE
T ss_pred CC-CChh-hcc-CCCCCEEECcCCcc
Confidence 88 4553 444 88999999998875
No 98
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1.6e-20 Score=161.61 Aligned_cols=175 Identities=21% Similarity=0.243 Sum_probs=98.7
Q ss_pred CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCc-CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776 102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASIS-NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 180 (281)
+.++++++.+. .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45566666655 4454332 3456666666666644444444 566666666666666644445566666666666666
Q ss_pred CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccc---cCCCCCCEEEcccCcccc
Q 038776 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLI---FNISSIQTFDVGSNYIEG 257 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~~n~l~~ 257 (281)
|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+ ..+++|+.|++++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~- 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK- 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-
Confidence 66664444455666666666666666665555566666666666666666663222222 34566666666666666
Q ss_pred cCChhhhhCCCC--CcEEEcccccC
Q 038776 258 EMPLDLGTTLPN--LRIFSITGNQF 280 (281)
Q Consensus 258 ~~p~~~~~~~~~--L~~L~l~~N~l 280 (281)
.+|...+..++. ++.|++++|++
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCHHHhhhccHhhcceEEecCCCc
Confidence 344333333554 35566666654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=1.8e-20 Score=170.96 Aligned_cols=169 Identities=25% Similarity=0.369 Sum_probs=144.3
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
..++.|+++++.+.. ++ .+..+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.+. .+| .+..+++|++|++
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEe
Confidence 668889999998874 34 58889999999999999984 444 889999999999999998 344 6889999999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|+.|+|++|.+++
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-
Confidence 9999984 3 4588999999999999999854 678889999999999999986666 8889999999999999985
Q ss_pred CCccccCCCCCCEEEcccCcccc
Q 038776 235 IPPLIFNISSIQTFDVGSNYIEG 257 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n~l~~ 257 (281)
+ ..+..+++|+.|++++|.+.+
T Consensus 190 l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp C-GGGTTCTTCSEEECCSEEEEC
T ss_pred C-hHHccCCCCCEEEccCCcCcC
Confidence 4 468889999999999999884
No 100
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1.3e-19 Score=165.53 Aligned_cols=183 Identities=25% Similarity=0.311 Sum_probs=107.0
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+. .+|. .+++|++|++++|.+. .+|. .+++|+.|++++|.++ .+|.. +++|++|++
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEEC
Confidence 44555555555554 2333 3445555555555554 2222 2334444444444444 23322 245555555
Q ss_pred ccCCCCCCCchh---cC--------------CCCCCCEEeCcCCcccccCCcccc-----------------CCCCCCeE
Q 038776 155 ALNHLAGKIPSE---FG--------------SLSKLQFLSTTANNLTGNIPSSLG-----------------NLSSLRGL 200 (281)
Q Consensus 155 ~~n~~~~~~p~~---~~--------------~l~~L~~L~l~~n~~~~~~~~~l~-----------------~l~~L~~L 200 (281)
++|.+++ +|.. +. .+++|+.|++++|.+++ +|..+. .+++|++|
T Consensus 149 s~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L 226 (622)
T 3g06_A 149 SDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKEL 226 (622)
T ss_dssp CSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred cCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEE
Confidence 5555542 2211 11 12555666666665552 222111 12567777
Q ss_pred EcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 201 SLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 201 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.. +++|+.|++++|++
T Consensus 227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~-l~~L~~L~L~~N~l 296 (622)
T 3g06_A 227 IVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNPL 296 (622)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGG-SCTTCEEECCSCCC
T ss_pred EccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhh-ccccCEEEecCCCC
Confidence 777777763 44 34578888888888887 4555 5678999999999998 88888776 99999999999987
Q ss_pred C
Q 038776 281 T 281 (281)
Q Consensus 281 ~ 281 (281)
+
T Consensus 297 ~ 297 (622)
T 3g06_A 297 S 297 (622)
T ss_dssp C
T ss_pred C
Confidence 5
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=1.4e-20 Score=148.20 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=102.3
Q ss_pred cCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCE
Q 038776 96 GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQF 175 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 175 (281)
..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..++.+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556677777777666 445 4666777777777777553 2335666777777777777776556666777777777
Q ss_pred EeCcCCcccccCCccccCCCCCCeEEcccCC-CcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCc
Q 038776 176 LSTTANNLTGNIPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNY 254 (281)
Q Consensus 176 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 254 (281)
|++++|.+++..|..+..+++|++|++++|. +. .+| .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 7777777766566667777777777777776 44 444 46677777778887777764 33 66677778888888887
Q ss_pred cc
Q 038776 255 IE 256 (281)
Q Consensus 255 l~ 256 (281)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=7.9e-21 Score=168.16 Aligned_cols=183 Identities=20% Similarity=0.235 Sum_probs=91.5
Q ss_pred cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCC--------------------------------
Q 038776 76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLR-------------------------------- 123 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-------------------------------- 123 (281)
+++.++++++.+ +.+|+.++.+++|++|++++|.+.+.+|..+++++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~ 90 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP 90 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCc
Confidence 344555555555 35555555555555555555555545555444444
Q ss_pred -cccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEc
Q 038776 124 -RLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSL 202 (281)
Q Consensus 124 -~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 202 (281)
+|++|++++|.+++ +|.. .++|++|++++|.+.+ +|.. .++|++|++++|.+++ +| .++.+++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 44555555555442 3322 2455555555555542 2211 1466677777766663 45 4666677777777
Q ss_pred ccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 203 SRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 203 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++|.+++ +|..+ .+|+.|++++|.+++ +| .++.+++|++|++++|.+++ +|.. .++|+.|++++|.+
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNIL 227 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCC
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcC
Confidence 7776663 44332 466777777777664 44 46667777777777777763 4431 34677777777765
No 103
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=8.3e-20 Score=166.87 Aligned_cols=178 Identities=28% Similarity=0.346 Sum_probs=87.9
Q ss_pred cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776 76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA 155 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 155 (281)
+++.|++++|.+. .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECC
Confidence 4455555555544 2333 3345555555555554 3333 4455555555555555 3333 34556666666
Q ss_pred cCCCCCCCchhcCCCCCCCEEeCcCCcccccCCcc---ccCC--------------CCCCeEEcccCCCcccccccCCC-
Q 038776 156 LNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSS---LGNL--------------SSLRGLSLSRNGFYGSIPDTFGG- 217 (281)
Q Consensus 156 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~---l~~l--------------~~L~~L~l~~n~~~~~~~~~~~~- 217 (281)
+|+++ .+|.. +++|++|++++|.+++ +|.. +..+ ++|+.|++++|.+++ +|..+..
T Consensus 130 ~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L 203 (622)
T 3g06_A 130 GNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSEL 203 (622)
T ss_dssp SSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred CCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchh
Confidence 66655 34432 3667777777777663 2322 2111 556666666666553 2221110
Q ss_pred ----------------CCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 218 ----------------LKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 218 ----------------l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|++
T Consensus 204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQL 273 (622)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCC
T ss_pred hEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCC
Confidence 1334444444444442 23 23345555555555555 3443 245566666666654
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.6e-20 Score=160.97 Aligned_cols=197 Identities=18% Similarity=0.123 Sum_probs=134.4
Q ss_pred ccccceeeCCC---------CCcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCc-hhccCCCcccE-eecc
Q 038776 63 CEWYGVTCSPR---------HQRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIP-PQIGHLRRLQI-LYLQ 131 (281)
Q Consensus 63 c~~~g~~~~~~---------~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l~ 131 (281)
|.+..+.|... ..+++.|++++|.+....+..|.++++|++|++++|.+.+.+| .+|.++++++. +.+.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 55556666431 2568899999999996555679999999999999999875555 46888888775 6667
Q ss_pred CCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC-CcccccCCccccCC-CCCCeEEcccCCCcc
Q 038776 132 INSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA-NNLTGNIPSSLGNL-SSLRGLSLSRNGFYG 209 (281)
Q Consensus 132 ~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~ 209 (281)
.|+++...|..+..+++|++|++++|++....+..+....++..+++.+ +.+....+..+..+ ..+++|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 7889866678889999999999999999855554555556666676654 34443333344444 35667777777776
Q ss_pred cccccCCCCCCCCeEeccc-CcCcCCCCccccCCCCCCEEEcccCcccccCCh
Q 038776 210 SIPDTFGGLKNLVNLSLVV-NNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPL 261 (281)
Q Consensus 210 ~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~ 261 (281)
.+|.......+|+++++.+ |.++...+..+..+++|+.|++++|+++ .+|.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~ 219 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS 219 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence 3444433445667777654 4444322345566677777777777766 4554
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=6.6e-20 Score=167.23 Aligned_cols=169 Identities=24% Similarity=0.353 Sum_probs=91.0
Q ss_pred CCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEE
Q 038776 97 NLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFL 176 (281)
Q Consensus 97 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 176 (281)
.+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+ ++. +..+++|++|++++|.+.+ +| .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 4455555666665554 233 35555666666666665553 222 5555666666666665552 22 45555666666
Q ss_pred eCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776 177 STTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256 (281)
Q Consensus 177 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 256 (281)
++++|.+.+ + +.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+.
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 666665553 1 3355555666666666655533 345555566666666666554333 555556666666666555
Q ss_pred ccCChhhhhCCCCCcEEEcccccC
Q 038776 257 GEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 257 ~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
+ +| .+.. +++|+.|+|++|++
T Consensus 189 ~-l~-~l~~-l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 189 D-LR-ALAG-LKNLDVLELFSQEC 209 (605)
T ss_dssp B-CG-GGTT-CTTCSEEECCSEEE
T ss_pred C-Ch-HHcc-CCCCCEEEccCCcC
Confidence 3 22 2333 55666666665543
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=5.7e-20 Score=157.45 Aligned_cols=198 Identities=19% Similarity=0.153 Sum_probs=157.7
Q ss_pred EEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc-cCcCCCCCcE-EEccc
Q 038776 79 ILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA-SISNCSNLLV-VSLAL 156 (281)
Q Consensus 79 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~-L~l~~ 156 (281)
+++-++++++ .+|..+. +++++|++++|.++...+.+|.++++|++|++++|.+.+.+|. .|.+++++++ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4667777787 6676663 6899999999999954556899999999999999998766654 6788988775 56677
Q ss_pred CCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEccc-CCCcccccccCCCC-CCCCeEecccCcCcCC
Q 038776 157 NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSR-NGFYGSIPDTFGGL-KNLVNLSLVVNNLSGT 234 (281)
Q Consensus 157 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~ 234 (281)
|++....|..+..+++|++|++++|++....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|+++ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~ 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-E
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-C
Confidence 999877778899999999999999999865555566667788898876 45554444556665 46889999999998 4
Q ss_pred CCccccCCCCCCEEEccc-CcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 235 IPPLIFNISSIQTFDVGS-NYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~-n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+|..+....+|++|++.+ |.++ .+|...+..+++|+.||+++|+|+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence 666666677899999986 5555 888887777999999999999885
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=1.2e-21 Score=182.58 Aligned_cols=200 Identities=21% Similarity=0.164 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCC-CCCCccccceeeCCCCCcEEEEEcCCCCcceecCccCcCCCCCCE-----EE
Q 038776 32 ETDRAALLEFKSKITNDALGVLGSWND-SIHFCEWYGVTCSPRHQRVTILDLQNLKLAGTLPPHIGNLSFLQK-----LD 105 (281)
Q Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~w~~-~~~~c~~~g~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~-----L~ 105 (281)
+.++.++.++..+.....+.....|.. ......|.+..+.. ++++.+++.++.+.. .+..+.....|+. ++
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~ 207 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDD 207 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccCcc
Confidence 445677777777664444444445643 23345666655443 556666666555543 1222211111111 11
Q ss_pred CCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccc
Q 038776 106 LRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTG 185 (281)
Q Consensus 106 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 185 (281)
++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|++|.++
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 2222222 23444555555555555555555 45555555555555555555555 55555555555555555555555
Q ss_pred cCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccc
Q 038776 186 NIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLI 239 (281)
Q Consensus 186 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 239 (281)
.+|..++.+++|++|++++|.++ .+|..++.+++|+.|+|++|.+++.+|..+
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 44555555555555555555554 445555555555555555555555444433
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=2e-20 Score=153.96 Aligned_cols=168 Identities=20% Similarity=0.210 Sum_probs=134.7
Q ss_pred cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776 76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA 155 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 155 (281)
+++.++++++.+.+.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence 3455667777777443 4677889999999999887 555 68889999999999999884 444 8889999999999
Q ss_pred cCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCC
Q 038776 156 LNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTI 235 (281)
Q Consensus 156 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 235 (281)
+|++++ +|.. .. ++|+.|++++|.+++. +.+..+++|++|++++|.+++. + .+..+++|+.|++++|.+++.
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 999884 4433 33 8899999999998853 4588899999999999998854 4 577889999999999999864
Q ss_pred CccccCCCCCCEEEcccCccccc
Q 038776 236 PPLIFNISSIQTFDVGSNYIEGE 258 (281)
Q Consensus 236 ~~~l~~~~~L~~L~l~~n~l~~~ 258 (281)
..+..+++|+.|++++|.+++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 6778889999999999988743
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=5.4e-22 Score=175.89 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=104.9
Q ss_pred CCCEEECCCCCCccC----CchhccCCCcccEeeccCCcccccC-----CccCcCCCCCcEEEcccCCCCCC----Cchh
Q 038776 100 FLQKLDLRNNSFTNE----IPPQIGHLRRLQILYLQINSFDGEI-----PASISNCSNLLVVSLALNHLAGK----IPSE 166 (281)
Q Consensus 100 ~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~-----p~~l~~l~~L~~L~l~~n~~~~~----~p~~ 166 (281)
+|++|++++|.+.+. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 444444444444421 2344445555555555555554221 11122455666666666665532 3444
Q ss_pred cCCCCCCCEEeCcCCcccccCCcccc-----CCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCCCCc
Q 038776 167 FGSLSKLQFLSTTANNLTGNIPSSLG-----NLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGTIPP 237 (281)
Q Consensus 167 ~~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~ 237 (281)
+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 55566666666666666533222222 124677777777766643 344555667888888888877654333
Q ss_pred cccC-----CCCCCEEEcccCcccc----cCChhhhhCCCCCcEEEcccccCC
Q 038776 238 LIFN-----ISSIQTFDVGSNYIEG----EMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 238 ~l~~-----~~~L~~L~l~~n~l~~----~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
.+.. .++|++|++++|.+++ .+|..+.. +++|++|++++|+++
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCC
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCC
Confidence 3322 5678888888888875 56666665 788888888888764
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.2e-18 Score=154.13 Aligned_cols=119 Identities=26% Similarity=0.361 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcc
Q 038776 76 RVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLA 155 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 155 (281)
+++.|++++|.+.+ +| .++.+++|++|++++|.+.+ +|.. ..+|++|++++|.+++ +| .++++++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 34444444444443 33 24445555555555554442 3322 1244444444444442 33 34455555555555
Q ss_pred cCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCc
Q 038776 156 LNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFY 208 (281)
Q Consensus 156 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 208 (281)
+|.+.+ +|.. .++|+.|++++|.+. .+| .+..+++|++|++++|.++
T Consensus 204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred CCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 554442 2221 124444444444444 333 2444555555555555544
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=3e-19 Score=161.44 Aligned_cols=166 Identities=24% Similarity=0.314 Sum_probs=143.3
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
++++.|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 67999999999998 666 457899999999999995 777 655 99999999999995 776 6899999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCC-------CeEecc
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNL-------VNLSLV 227 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-------~~L~l~ 227 (281)
++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|++|++++|.++ .+|. +.. +| +.|+++
T Consensus 148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence 9999985 665 67899999999999985 676 55 89999999999998 6776 554 77 999999
Q ss_pred cCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhh
Q 038776 228 VNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGT 265 (281)
Q Consensus 228 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~ 265 (281)
+|.++ .+|..+..+++|+.|++++|++++.+|..+..
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 99999 68888888999999999999999988887765
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=2.2e-21 Score=172.03 Aligned_cols=204 Identities=22% Similarity=0.217 Sum_probs=94.7
Q ss_pred cEEEEEcCCCCcce----ecCccCcCCCCCCEEECCCCCCccCCchhcc-----CCCcccEeeccCCccccc----CCcc
Q 038776 76 RVTILDLQNLKLAG----TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIG-----HLRRLQILYLQINSFDGE----IPAS 142 (281)
Q Consensus 76 ~l~~l~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~p~~ 142 (281)
+++.|++++|.+.. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 45666666665552 3344555566666666666655432222111 133455555555544431 1222
Q ss_pred CcCCCCCcEEEcccC-----------------------------CCCCC----CchhcCCCCCCCEEeCcCCcccccC--
Q 038776 143 ISNCSNLLVVSLALN-----------------------------HLAGK----IPSEFGSLSKLQFLSTTANNLTGNI-- 187 (281)
Q Consensus 143 l~~l~~L~~L~l~~n-----------------------------~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~-- 187 (281)
+..+++|++|++++| .++.. ++..+..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 333444444444444 44321 2333344455555555555443221
Q ss_pred ---CccccCCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCCCCcccc-----CCCCCCEEEcccCcc
Q 038776 188 ---PSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGTIPPLIF-----NISSIQTFDVGSNYI 255 (281)
Q Consensus 188 ---~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l 255 (281)
+.....+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 11112344555555555555432 334444455555555555555432222221 124566666666665
Q ss_pred ccc----CChhhhhCCCCCcEEEcccccC
Q 038776 256 EGE----MPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 256 ~~~----~p~~~~~~~~~L~~L~l~~N~l 280 (281)
++. ++..+.. +++|+.|++++|++
T Consensus 326 ~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 326 TAACCSHFSSVLAQ-NRFLLELQISNNRL 353 (461)
T ss_dssp BGGGHHHHHHHHHH-CSSCCEEECCSSBC
T ss_pred chHHHHHHHHHHhh-CCCccEEEccCCcc
Confidence 543 2233333 56777777777665
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=4.3e-22 Score=180.51 Aligned_cols=123 Identities=21% Similarity=0.271 Sum_probs=102.3
Q ss_pred CCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecc
Q 038776 148 NLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227 (281)
Q Consensus 148 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 227 (281)
.|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 57889999998884 666 888999999999999998 778888999999999999999985 66 78889999999999
Q ss_pred cCcCcCCC-CccccCCCCCCEEEcccCcccccCCh--hhhhCCCCCcEEEc
Q 038776 228 VNNLSGTI-PPLIFNISSIQTFDVGSNYIEGEMPL--DLGTTLPNLRIFSI 275 (281)
Q Consensus 228 ~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~~p~--~~~~~~~~L~~L~l 275 (281)
+|.+++.. |..++.+++|+.|++++|.+++..|. .+...+|+|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99998765 88889999999999999998865442 23334888998864
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=5.7e-19 Score=145.26 Aligned_cols=147 Identities=22% Similarity=0.274 Sum_probs=125.0
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.|+++++.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.++ .+|... . ++|++|++
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEEC
T ss_pred CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEc
Confidence 67889999999887 445 68889999999999999984 454 899999999999999998 455433 3 89999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
++|.+++ + +.+..+++|+.|++++|++++. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 114 ~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 114 DNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999985 3 3589999999999999999854 3 688899999999999999865 6788899999999999999854
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=8.7e-20 Score=170.08 Aligned_cols=181 Identities=24% Similarity=0.270 Sum_probs=124.3
Q ss_pred ecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCC
Q 038776 90 TLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGS 169 (281)
Q Consensus 90 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 169 (281)
..+..+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 44667889999999999999998 78887889999999999999999 89999999999999999999999 88999999
Q ss_pred CCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCC-CCCeEecccCcCcCCCCccccCCCCCCEE
Q 038776 170 LSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLK-NLVNLSLVVNNLSGTIPPLIFNISSIQTF 248 (281)
Q Consensus 170 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 248 (281)
+++|++|++++|.++ .+|..++.+++|++|++++|.+++.+|..+..+. ....+++++|.+++.+|.. |+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence 999999999999997 7888899999999999999999988887775432 2234778999998877754 4556
Q ss_pred EcccC----cccccCChhhh---hCCCCCcEEEcccccC
Q 038776 249 DVGSN----YIEGEMPLDLG---TTLPNLRIFSITGNQF 280 (281)
Q Consensus 249 ~l~~n----~l~~~~p~~~~---~~~~~L~~L~l~~N~l 280 (281)
+++.| ...|.++.... ..+.+++...+++|-+
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp -------------------------------------CC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 66655 22223332211 1244555556666644
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=2.5e-21 Score=175.53 Aligned_cols=178 Identities=19% Similarity=0.193 Sum_probs=148.7
Q ss_pred cCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCc-------------ccccCCccCcCCCCCcEEE-cccCCCCC
Q 038776 96 GNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINS-------------FDGEIPASISNCSNLLVVS-LALNHLAG 161 (281)
Q Consensus 96 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~p~~l~~l~~L~~L~-l~~n~~~~ 161 (281)
...++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56889999999999997 889999999999999997764 4556677778888888888 5555432
Q ss_pred CCch------hcCC--CCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776 162 KIPS------EFGS--LSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 162 ~~p~------~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 233 (281)
.++. .+.. ...|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1111 0111 1358999999999985 676 899999999999999999 889999999999999999999996
Q ss_pred CCCccccCCCCCCEEEcccCcccccC-ChhhhhCCCCCcEEEcccccCC
Q 038776 234 TIPPLIFNISSIQTFDVGSNYIEGEM-PLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 234 ~~~~~l~~~~~L~~L~l~~n~l~~~~-p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+| .++.+++|++|++++|.+++.. |..+.. +++|+.|++++|+++
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSLC 546 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG-CTTCCEEECTTSGGG
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc-CCCCCEEEecCCcCC
Confidence 67 8999999999999999999765 888877 999999999999874
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=9.1e-18 Score=131.51 Aligned_cols=132 Identities=23% Similarity=0.292 Sum_probs=114.9
Q ss_pred CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCc-cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776 102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPA-SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 180 (281)
+.++++++.+. .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999987 77775543 899999999999854443 388999999999999999988888899999999999999
Q ss_pred CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCC
Q 038776 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 236 (281)
|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99997777778899999999999999998888899999999999999999986544
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.2e-17 Score=130.80 Aligned_cols=132 Identities=25% Similarity=0.305 Sum_probs=116.0
Q ss_pred EEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCch-hccCCCcccEeeccCCcccccCCccCcCCCCCcEEEccc
Q 038776 78 TILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPP-QIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLAL 156 (281)
Q Consensus 78 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 156 (281)
+.++++++++. .+|..+.. ++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46788888885 66766543 899999999999865554 489999999999999999988889999999999999999
Q ss_pred CCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc
Q 038776 157 NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP 212 (281)
Q Consensus 157 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 212 (281)
|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998777789999999999999999998889999999999999999999986543
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=3.7e-18 Score=130.77 Aligned_cols=131 Identities=19% Similarity=0.154 Sum_probs=67.0
Q ss_pred CCCCEEECCCCCCc-cCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEe
Q 038776 99 SFLQKLDLRNNSFT-NEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLS 177 (281)
Q Consensus 99 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 177 (281)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 45555556666666666666666532 4555566666666666665544444444455555555
Q ss_pred CcCCcccccC-CccccCCCCCCeEEcccCCCccccc---ccCCCCCCCCeEecccCcC
Q 038776 178 TTANNLTGNI-PSSLGNLSSLRGLSLSRNGFYGSIP---DTFGGLKNLVNLSLVVNNL 231 (281)
Q Consensus 178 l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~ 231 (281)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555554221 1334444444444444444442222 1333444444444444443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=6.5e-18 Score=129.41 Aligned_cols=137 Identities=21% Similarity=0.184 Sum_probs=103.1
Q ss_pred CCcccEeeccCCccc-ccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeE
Q 038776 122 LRRLQILYLQINSFD-GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGL 200 (281)
Q Consensus 122 l~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 200 (281)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888876 66777777888888888888887744 667788888888888888876666666668888888
Q ss_pred EcccCCCcccc-cccCCCCCCCCeEecccCcCcCCCC---ccccCCCCCCEEEcccCcccccCCh
Q 038776 201 SLSRNGFYGSI-PDTFGGLKNLVNLSLVVNNLSGTIP---PLIFNISSIQTFDVGSNYIEGEMPL 261 (281)
Q Consensus 201 ~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~l~~~~p~ 261 (281)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+. ++|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 88888887432 2567778888888888888875443 36777888888888888776 4553
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=7.7e-18 Score=126.39 Aligned_cols=129 Identities=22% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCCcEEEcccCCCC-CCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEe
Q 038776 147 SNLLVVSLALNHLA-GKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLS 225 (281)
Q Consensus 147 ~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 225 (281)
++|++|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34445555555444 34444445555555555555555433 4455566666666666666655565555566777777
Q ss_pred cccCcCcCC-CCccccCCCCCCEEEcccCcccccCC--hhhhhCCCCCcEEEccc
Q 038776 226 LVVNNLSGT-IPPLIFNISSIQTFDVGSNYIEGEMP--LDLGTTLPNLRIFSITG 277 (281)
Q Consensus 226 l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~p--~~~~~~~~~L~~L~l~~ 277 (281)
+++|.+++. .+..+..+++|++|++++|.+++..+ ...+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777776642 23566777777777777777774433 12333377888877763
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=127.90 Aligned_cols=128 Identities=23% Similarity=0.326 Sum_probs=109.2
Q ss_pred cEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccC
Q 038776 126 QILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRN 205 (281)
Q Consensus 126 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 205 (281)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888988888 7776553 68999999999998 77788899999999999999998776678888999999999999
Q ss_pred CCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccc
Q 038776 206 GFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257 (281)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 257 (281)
.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9987777788899999999999999986555678888999999999998864
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=8.9e-18 Score=126.05 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=64.2
Q ss_pred CcccEeeccCCccc-ccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEE
Q 038776 123 RRLQILYLQINSFD-GEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLS 201 (281)
Q Consensus 123 ~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 201 (281)
++++.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 34444444445555555555544422 3344455555555555555443444444455555555
Q ss_pred cccCCCccc-ccccCCCCCCCCeEecccCcCcCCCC---ccccCCCCCCEEEcc
Q 038776 202 LSRNGFYGS-IPDTFGGLKNLVNLSLVVNNLSGTIP---PLIFNISSIQTFDVG 251 (281)
Q Consensus 202 l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~ 251 (281)
+++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555532 22455555666666666666654333 345556666666554
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=1.8e-16 Score=122.33 Aligned_cols=133 Identities=21% Similarity=0.215 Sum_probs=111.0
Q ss_pred ccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEccc
Q 038776 125 LQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSR 204 (281)
Q Consensus 125 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 204 (281)
.+.++++++.++ .+|..+ .++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 567888888887 667544 37899999999999866666678999999999999999866556678899999999999
Q ss_pred CCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCC
Q 038776 205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMP 260 (281)
Q Consensus 205 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p 260 (281)
|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99997777778889999999999999986555567888999999999999887655
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.7e-16 Score=124.39 Aligned_cols=128 Identities=27% Similarity=0.356 Sum_probs=115.5
Q ss_pred CEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCC
Q 038776 102 QKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTAN 181 (281)
Q Consensus 102 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 181 (281)
+.++++++.+. .+|..+ .++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 68999999988 677654 368999999999998 88889999999999999999999777778999999999999999
Q ss_pred cccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776 182 NLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 182 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 233 (281)
.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9997777789999999999999999996666678899999999999999864
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=2.3e-16 Score=121.83 Aligned_cols=133 Identities=21% Similarity=0.254 Sum_probs=113.5
Q ss_pred CCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776 101 LQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 101 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 180 (281)
.+.++++++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 478999999887 566544 47899999999999965556678999999999999999966666689999999999999
Q ss_pred CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCC
Q 038776 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP 236 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 236 (281)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99996666678899999999999999996666667889999999999999987554
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=2.5e-16 Score=121.47 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=85.7
Q ss_pred ccCCCcccEeeccCCcccccCCccCcCC-CCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCC
Q 038776 119 IGHLRRLQILYLQINSFDGEIPASISNC-SNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197 (281)
Q Consensus 119 ~~~l~~L~~L~l~~n~~~~~~p~~l~~l-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 197 (281)
+..+++|+.|++++|.++ .+|. +..+ ++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 456677777888877777 4443 3333 3777777777777643 456677777777777777764332334667777
Q ss_pred CeEEcccCCCcccccc--cCCCCCCCCeEecccCcCcCCCCcc----ccCCCCCCEEEcccCccc
Q 038776 198 RGLSLSRNGFYGSIPD--TFGGLKNLVNLSLVVNNLSGTIPPL----IFNISSIQTFDVGSNYIE 256 (281)
Q Consensus 198 ~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~----l~~~~~L~~L~l~~n~l~ 256 (281)
++|++++|.+. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777775 4444 5666677777777777776 34443 666677777777776654
No 128
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=1.3e-18 Score=158.78 Aligned_cols=205 Identities=16% Similarity=0.139 Sum_probs=121.7
Q ss_pred cEEEEEcCCCCcceecC-ccCcCCCCCCEEECCCCCCc-cCCchhccCCCcccEeeccC-----------Cccccc-CCc
Q 038776 76 RVTILDLQNLKLAGTLP-PHIGNLSFLQKLDLRNNSFT-NEIPPQIGHLRRLQILYLQI-----------NSFDGE-IPA 141 (281)
Q Consensus 76 ~l~~l~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~-----------n~~~~~-~p~ 141 (281)
+++.|++++|.+.+... ..+..+++|++|+++ +.+. +.++..+..+++|++|++++ +.+++. ++.
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 45555555554332211 123445555555555 2222 12222233455666666662 333321 111
Q ss_pred cCcCCCCCcEEEcccCCCCCCCchhcCC-CCCCCEEeCc----CCccccc-----CCccccCCCCCCeEEcccCC--Ccc
Q 038776 142 SISNCSNLLVVSLALNHLAGKIPSEFGS-LSKLQFLSTT----ANNLTGN-----IPSSLGNLSSLRGLSLSRNG--FYG 209 (281)
Q Consensus 142 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~L~l~----~n~~~~~-----~~~~l~~l~~L~~L~l~~n~--~~~ 209 (281)
....+++|++|+++.+.+++..+..++. +++|+.|+++ .|.+++. ++..+..+++|++|+++.|. +++
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 2234667777777666666555555544 7777777775 4455432 22234557788888886543 444
Q ss_pred cccccCC-CCCCCCeEecccCcCcC-CCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 210 SIPDTFG-GLKNLVNLSLVVNNLSG-TIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 210 ~~~~~~~-~l~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
..+..+. .+++|+.|++++|.+++ .++..+..+++|++|++++|.+++.....+...+++|+.|++++|+++
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 4333333 47889999999998875 345566788999999999999876655555555899999999999875
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.64 E-value=5.6e-19 Score=139.13 Aligned_cols=129 Identities=26% Similarity=0.303 Sum_probs=63.1
Q ss_pred CCCCEEECCCCCCccCCch------hccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCC
Q 038776 99 SFLQKLDLRNNSFTNEIPP------QIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSK 172 (281)
Q Consensus 99 ~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 172 (281)
..++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444433333 55566666666666666552 44 5555556666666665555 44444444455
Q ss_pred CCEEeCcCCcccccCCccccCCCCCCeEEcccCCCccccc-ccCCCCCCCCeEecccCcCc
Q 038776 173 LQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIP-DTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 173 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~ 232 (281)
|+.|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 5555555555543 22 34444455555555554442111 23444444444444444444
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=3.3e-16 Score=120.87 Aligned_cols=132 Identities=19% Similarity=0.135 Sum_probs=74.0
Q ss_pred CcCCCCCCEEECCCCCCccCCchhccCC-CcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCC
Q 038776 95 IGNLSFLQKLDLRNNSFTNEIPPQIGHL-RRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKL 173 (281)
Q Consensus 95 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 173 (281)
+....+|++|++++|.+. .+|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 444556666666666665 3333 3333 3666666666666532 455566666666666666653322333566666
Q ss_pred CEEeCcCCcccccCCc--cccCCCCCCeEEcccCCCccccccc----CCCCCCCCeEecccCcCc
Q 038776 174 QFLSTTANNLTGNIPS--SLGNLSSLRGLSLSRNGFYGSIPDT----FGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 174 ~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~n~~~ 232 (281)
+.|++++|.+. .+|. .+..+++|++|++++|.+. .+|.. +..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666666664 3343 4555666666666666665 33432 555666666666666543
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=3.4e-17 Score=149.45 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=16.5
Q ss_pred CCCCCEEEcccCcccccCChhhhhCCCCCcEEEcc
Q 038776 242 ISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT 276 (281)
Q Consensus 242 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 276 (281)
+++|++|++..|.+++..+..+...+++|+.|+++
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 44455555544444444444444334555555553
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=4.9e-15 Score=125.64 Aligned_cols=174 Identities=14% Similarity=0.130 Sum_probs=129.6
Q ss_pred CCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCC-------C----------
Q 038776 98 LSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHL-------A---------- 160 (281)
Q Consensus 98 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~-------~---------- 160 (281)
+++|+.++++. .+....+.+|.++++|+.+++..|.+....+..|..+.++..+....+.. .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 88899999988 77655566788899999999988887755566677777676666544211 0
Q ss_pred ---------CCCchh---------------------------c-CCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcc
Q 038776 161 ---------GKIPSE---------------------------F-GSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLS 203 (281)
Q Consensus 161 ---------~~~p~~---------------------------~-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 203 (281)
+.++.. + ..+++|+.+++.+|+++...+..|..+++|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 000000 0 027889999999988885555678889999999999
Q ss_pred cCCCcccccccCCCCCCCC-eEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEc
Q 038776 204 RNGFYGSIPDTFGGLKNLV-NLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSI 275 (281)
Q Consensus 204 ~n~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l 275 (281)
.| +....+..|.++++|+ .+++.+ .++...+..|.++++|+.+++++|.++ .++...+.++++|+.++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 87 6655667788999999 999988 666556688889999999999999988 667767777999998874
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=1.1e-18 Score=137.42 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=103.1
Q ss_pred ccCCCcccEeeccCCcccccCCc------cCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCcccc
Q 038776 119 IGHLRRLQILYLQINSFDGEIPA------SISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLG 192 (281)
Q Consensus 119 ~~~l~~L~~L~l~~n~~~~~~p~------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 192 (281)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455666666666666666555 66777777777777777774 55 6677777777777777776 5566666
Q ss_pred CCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCC-ccccCCCCCCEEEcccCcccccCChh---------
Q 038776 193 NLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIP-PLIFNISSIQTFDVGSNYIEGEMPLD--------- 262 (281)
Q Consensus 193 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~p~~--------- 262 (281)
.+++|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+.+|..
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 66777777777777764 44 46666777777777777763221 35667777777777777776554431
Q ss_pred hhhCCCCCcEEEcccccC
Q 038776 263 LGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 263 ~~~~~~~L~~L~l~~N~l 280 (281)
+...+++|+.|| +|++
T Consensus 169 ~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHHHCSSCSEEC--CGGG
T ss_pred HHHhCCCcEEEC--Cccc
Confidence 223377777765 5543
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=2.3e-14 Score=109.83 Aligned_cols=109 Identities=23% Similarity=0.192 Sum_probs=93.6
Q ss_pred CCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecc
Q 038776 148 NLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227 (281)
Q Consensus 148 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 227 (281)
..+++++++|.++ .+|..+ .++++.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999998 577655 3889999999999997778889999999999999999997777778899999999999
Q ss_pred cCcCcCCCCccccCCCCCCEEEcccCcccccC
Q 038776 228 VNNLSGTIPPLIFNISSIQTFDVGSNYIEGEM 259 (281)
Q Consensus 228 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 259 (281)
+|++++..+..+..+++|++|++++|++....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999766667889999999999999987443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=3.8e-14 Score=109.00 Aligned_cols=106 Identities=22% Similarity=0.202 Sum_probs=91.0
Q ss_pred CcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEeccc
Q 038776 149 LLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV 228 (281)
Q Consensus 149 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 228 (281)
-+.+++++|.+. .+|..+. ++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999987 7777654 8899999999999977788899999999999999999966666678899999999999
Q ss_pred CcCcCCCCccccCCCCCCEEEcccCcccc
Q 038776 229 NNLSGTIPPLIFNISSIQTFDVGSNYIEG 257 (281)
Q Consensus 229 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 257 (281)
|++++..+..+..+++|++|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99996555568889999999999999873
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=5e-17 Score=148.32 Aligned_cols=204 Identities=15% Similarity=0.121 Sum_probs=129.8
Q ss_pred CcEEEEEcCCCCcceec-CccCcCCCCCCEEECCCCCCccC-CchhccCCCcccEeeccC---------CcccccCCccC
Q 038776 75 QRVTILDLQNLKLAGTL-PPHIGNLSFLQKLDLRNNSFTNE-IPPQIGHLRRLQILYLQI---------NSFDGEIPASI 143 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~---------n~~~~~~p~~l 143 (281)
++++.|+++++.+.+.. +..+..+++|++|++++| +... ++.....+++|++|++.+ +.+++.....+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 56777777777755332 222456677788887776 3321 222223467788887733 33332211122
Q ss_pred -cCCCCCcEEEcccCCCCCCCchhcC-CCCCCCEEeCc--C----Cccccc-----CCccccCCCCCCeEEcccCCCccc
Q 038776 144 -SNCSNLLVVSLALNHLAGKIPSEFG-SLSKLQFLSTT--A----NNLTGN-----IPSSLGNLSSLRGLSLSRNGFYGS 210 (281)
Q Consensus 144 -~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~--~----n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~ 210 (281)
..+++|++|.+..+.+++..+..+. .+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 2367888888777777755444444 57888888888 3 344411 112245677888888876 55544
Q ss_pred ccccCCC-CCCCCeEecccCcCcCCCCccc-cCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccccC
Q 038776 211 IPDTFGG-LKNLVNLSLVVNNLSGTIPPLI-FNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQF 280 (281)
Q Consensus 211 ~~~~~~~-l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l 280 (281)
.+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+..+...+++|+.|++++|++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4444443 7889999999998865444443 56788999999999887655555555588999999999876
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=9.9e-14 Score=106.25 Aligned_cols=105 Identities=26% Similarity=0.284 Sum_probs=67.3
Q ss_pred CCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcC
Q 038776 101 LQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTA 180 (281)
Q Consensus 101 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 180 (281)
.+.+++++|.+. .+|..+ .++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 466777777776 455544 25677777777777755566666777777777777777644444456666666666666
Q ss_pred CcccccCCccccCCCCCCeEEcccCCCc
Q 038776 181 NNLTGNIPSSLGNLSSLRGLSLSRNGFY 208 (281)
Q Consensus 181 n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 208 (281)
|++++..+..+..+++|++|++++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6666444445666666666666666655
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=1.3e-13 Score=105.95 Aligned_cols=107 Identities=24% Similarity=0.270 Sum_probs=94.3
Q ss_pred ccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEccc
Q 038776 125 LQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSR 204 (281)
Q Consensus 125 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 204 (281)
-+.+++++|.+. .+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999997 7888764 8999999999999987788899999999999999999965555678999999999999
Q ss_pred CCCcccccccCCCCCCCCeEecccCcCcCC
Q 038776 205 NGFYGSIPDTFGGLKNLVNLSLVVNNLSGT 234 (281)
Q Consensus 205 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 234 (281)
|.+++..+..+..+++|+.|++++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999966666699999999999999999843
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=4.8e-14 Score=119.52 Aligned_cols=197 Identities=15% Similarity=0.160 Sum_probs=138.3
Q ss_pred CcEEEEEcCCCCcc--eecCccCcCCCCCCEEECCCCCCccCCchhccC--------CCcccEeeccCCcccccCCccCc
Q 038776 75 QRVTILDLQNLKLA--GTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGH--------LRRLQILYLQINSFDGEIPASIS 144 (281)
Q Consensus 75 ~~l~~l~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--------l~~L~~L~l~~n~~~~~~p~~l~ 144 (281)
++++.|++++|.+. ......+ +.++.+.+..+.+ .+.+|.+ +++|+.+++.. .++..-+..|.
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred ccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 45666666666555 2211112 1133334443322 2346667 99999999998 77755566799
Q ss_pred CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcc----cccCCccc-----------------------------
Q 038776 145 NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNL----TGNIPSSL----------------------------- 191 (281)
Q Consensus 145 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~----~~~~~~~l----------------------------- 191 (281)
++++|+.++++.|.+....+..|..+.++..+....+.. .......+
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~ 201 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQP 201 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCG
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCc
Confidence 999999999999988756666677777777776554211 00000000
Q ss_pred ---------------------cCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCC-EEE
Q 038776 192 ---------------------GNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQ-TFD 249 (281)
Q Consensus 192 ---------------------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~-~L~ 249 (281)
..+++|+.+++++|+++...+..|.++++|+.+++.+| ++...+..|.++++|+ .++
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 02689999999999998666667999999999999998 7656667889999999 999
Q ss_pred cccCcccccCChhhhhCCCCCcEEEcccccCC
Q 038776 250 VGSNYIEGEMPLDLGTTLPNLRIFSITGNQFT 281 (281)
Q Consensus 250 l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~l~ 281 (281)
+.+ .++ .++...+.++++|+.+++++|+++
T Consensus 281 l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 281 LPA-SVT-AIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp ECT-TCC-EECTTTTTTCTTEEEEEECSSCCC
T ss_pred Ecc-cce-EEchhhhhCCccCCEEEeCCCccC
Confidence 998 666 666666677999999999988764
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=8.7e-16 Score=140.11 Aligned_cols=201 Identities=14% Similarity=0.147 Sum_probs=116.0
Q ss_pred CcEEEEEcCCCCcceecCccCc-CCCCCCEEECCCC-CCccC-CchhccCCCcccEeeccCCcccccCCc----cCcCCC
Q 038776 75 QRVTILDLQNLKLAGTLPPHIG-NLSFLQKLDLRNN-SFTNE-IPPQIGHLRRLQILYLQINSFDGEIPA----SISNCS 147 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~----~l~~l~ 147 (281)
++++.|+++++.+.+..+..+. .+++|++|++++| .+... ++..+..+++|++|++++|.+++..+. ....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5677777777776654444443 4677777777777 33322 334444677788888877776543322 223566
Q ss_pred CCcEEEcccCC--CCC-CCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCC-----------------
Q 038776 148 NLLVVSLALNH--LAG-KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGF----------------- 207 (281)
Q Consensus 148 ~L~~L~l~~n~--~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~----------------- 207 (281)
+|++|++++|. +.. .++.....+++|+.|++++|...+.++..+..+++|++|++..+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 77888877775 211 1111223467777887777732223555555666677776544321
Q ss_pred ---------c----ccccccCCCCCCCCeEecccCcCcCC-CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEE
Q 038776 208 ---------Y----GSIPDTFGGLKNLVNLSLVVNNLSGT-IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIF 273 (281)
Q Consensus 208 ---------~----~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L 273 (281)
. +.++..+..+++|+.|++++|.+++. ++..+..+++|++|++++| +.+.....+...+++|+.|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 0 11222233457777777777776532 2233556777888888777 4433333444447778888
Q ss_pred Ecc
Q 038776 274 SIT 276 (281)
Q Consensus 274 ~l~ 276 (281)
+++
T Consensus 344 ~L~ 346 (594)
T 2p1m_B 344 RVF 346 (594)
T ss_dssp EEE
T ss_pred EEe
Confidence 773
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.49 E-value=7.6e-16 Score=132.63 Aligned_cols=167 Identities=18% Similarity=0.157 Sum_probs=96.0
Q ss_pred CCCCEEECCCCCCccCCchhccC-----CCcccEeeccCCcccccCCccC-cCCCCCcEEEcccCCCCCCCchhc-----
Q 038776 99 SFLQKLDLRNNSFTNEIPPQIGH-----LRRLQILYLQINSFDGEIPASI-SNCSNLLVVSLALNHLAGKIPSEF----- 167 (281)
Q Consensus 99 ~~L~~L~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~~n~~~~~~p~~~----- 167 (281)
+.|+.|++++|.+.......+.. .++|++|++++|.++......+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45667777776665332222221 2567777777776653222222 234566777777776654333322
Q ss_pred CCCCCCCEEeCcCCccccc----CCccccCCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCC----C
Q 038776 168 GSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----I 235 (281)
Q Consensus 168 ~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~ 235 (281)
...++|+.|++++|.++.. ++..+...++|++|++++|.+.+. ++..+...++|+.|++++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2456677777777776532 333445566777777777776532 244455566777777777777632 2
Q ss_pred CccccCCCCCCEEEcccCcccccCChhhhh
Q 038776 236 PPLIFNISSIQTFDVGSNYIEGEMPLDLGT 265 (281)
Q Consensus 236 ~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~ 265 (281)
...+...++|++|++++|.+++.....+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 334445567777777777777555444443
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=1.5e-15 Score=130.74 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=119.7
Q ss_pred CCcccEeeccCCcccccCCccC----c-CCCCCcEEEcccCCCCCCCchhc-CCCCCCCEEeCcCCcccccCCccc----
Q 038776 122 LRRLQILYLQINSFDGEIPASI----S-NCSNLLVVSLALNHLAGKIPSEF-GSLSKLQFLSTTANNLTGNIPSSL---- 191 (281)
Q Consensus 122 l~~L~~L~l~~n~~~~~~p~~l----~-~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~l---- 191 (281)
+++|+.|++++|.++......+ . ..++|++|++++|.++......+ ..+++|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999875333322 2 23799999999999874333332 345689999999999975433333
Q ss_pred -cCCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCChh
Q 038776 192 -GNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMPLD 262 (281)
Q Consensus 192 -~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~ 262 (281)
...++|++|++++|.+++. ++..+...++|++|++++|.+.+. ++..+...++|++|++++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468899999999999742 444556788999999999998742 3456677789999999999998644333
Q ss_pred hhh---CCCCCcEEEcccccCC
Q 038776 263 LGT---TLPNLRIFSITGNQFT 281 (281)
Q Consensus 263 ~~~---~~~~L~~L~l~~N~l~ 281 (281)
+.. ..++|+.|++++|+|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 322 2699999999999985
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=1.4e-12 Score=111.22 Aligned_cols=105 Identities=20% Similarity=0.199 Sum_probs=87.4
Q ss_pred cEEEcccC-CCCCCCchhcCCCCCCCEEeCcC-CcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecc
Q 038776 150 LVVSLALN-HLAGKIPSEFGSLSKLQFLSTTA-NNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLV 227 (281)
Q Consensus 150 ~~L~l~~n-~~~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 227 (281)
..++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..+..+++|++|+|++|.+++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 777 6788 89999999999996 99986666788899999999999999998888888999999999999
Q ss_pred cCcCcCCCCccccCCCCCCEEEcccCcccc
Q 038776 228 VNNLSGTIPPLIFNISSIQTFDVGSNYIEG 257 (281)
Q Consensus 228 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 257 (281)
+|++++..+..+..++ |+.|++++|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999865555555554 9999999998874
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=1.3e-11 Score=107.21 Aligned_cols=193 Identities=12% Similarity=0.105 Sum_probs=84.6
Q ss_pred EEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEccc
Q 038776 77 VTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLAL 156 (281)
Q Consensus 77 l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 156 (281)
++.+.+.. .+...-...|.++.+|+.++++.|.+......+|. ..+|+.+.+..+ +...-...|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 44444443 33333334566666666666666655533333343 355555555533 3323334455555566665554
Q ss_pred CCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCc-----ccccccCCCCCCCCeEecccCcC
Q 038776 157 NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFY-----GSIPDTFGGLKNLVNLSLVVNNL 231 (281)
Q Consensus 157 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~ 231 (281)
+ +.......|.. .+|+.+.+. +.++.....++..+++|+.+.+.++.+. ...+..|.++++|+.+.+.+ .+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred C-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 3 22111222322 344444442 2232222344445555555555544432 12233344455555555542 23
Q ss_pred cCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEccccc
Q 038776 232 SGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 232 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
+......|.++++|+.+.+..+ ++ .+....+.++ +|+.+++++|.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred EEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 3223334444455555555333 22 2333333334 45555554443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=1.9e-12 Score=110.38 Aligned_cols=105 Identities=23% Similarity=0.205 Sum_probs=92.1
Q ss_pred cEeeccCC-cccccCCccCcCCCCCcEEEccc-CCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcc
Q 038776 126 QILYLQIN-SFDGEIPASISNCSNLLVVSLAL-NHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLS 203 (281)
Q Consensus 126 ~~L~l~~n-~~~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 203 (281)
..++.+++ .++ .+|. +..+++|++|+|++ |.+.+..+..+..+++|+.|+|++|.+++..|..+..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 788 6888 99999999999996 99997777889999999999999999998888889999999999999
Q ss_pred cCCCcccccccCCCCCCCCeEecccCcCcC
Q 038776 204 RNGFYGSIPDTFGGLKNLVNLSLVVNNLSG 233 (281)
Q Consensus 204 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 233 (281)
+|.+++..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999966555666665 9999999999874
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.31 E-value=7e-11 Score=102.62 Aligned_cols=196 Identities=12% Similarity=0.103 Sum_probs=150.6
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEc
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSL 154 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 154 (281)
.+++.++++.+.+.......|. ...|+.+.+..+ +...-..+|.++++|+.+++..+ ++..-...|.+ .+|+.+.+
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 6789999999888854444454 689999999855 66456678999999999999875 44344456666 78999999
Q ss_pred ccCCCCCCCchhcCCCCCCCEEeCcCCccc-----ccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccC
Q 038776 155 ALNHLAGKIPSEFGSLSKLQFLSTTANNLT-----GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVN 229 (281)
Q Consensus 155 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~-----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 229 (281)
.. .+.......|..+++|+.+.+.++.+. ...+..+..+++|+.+.+.. .++......|.++++|+.+.+..+
T Consensus 256 p~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 PN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp ET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred CC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 54 455455667899999999999887664 24456788999999999984 466455677889999999999665
Q ss_pred cCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCC-CCcEEEccccc
Q 038776 230 NLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLP-NLRIFSITGNQ 279 (281)
Q Consensus 230 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~-~L~~L~l~~N~ 279 (281)
++..-...|.++ +|+.+++.+|.+. .++...+.+++ +++.|++..+.
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGG
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHH
Confidence 654556788888 9999999999887 55555555564 78899887664
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.24 E-value=2.5e-12 Score=110.04 Aligned_cols=200 Identities=14% Similarity=0.186 Sum_probs=124.3
Q ss_pred CcEEEEEcCCCCcce-e-------cCccCcCCCCCCEEECCCCCCc---------cCCchhccCCCcccEeeccCCcccc
Q 038776 75 QRVTILDLQNLKLAG-T-------LPPHIGNLSFLQKLDLRNNSFT---------NEIPPQIGHLRRLQILYLQINSFDG 137 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~-~-------~~~~~~~l~~L~~L~l~~n~~~---------~~~~~~~~~l~~L~~L~l~~n~~~~ 137 (281)
.+++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+|+|+.|.+++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456666666554432 1 1233455778899988654321 124455677899999999887322
Q ss_pred cCCccCcCCCCCcEEEcccCCCCCCCchhcC--CCCCCCEEeCcC--Cccccc-----CCccc--cCCCCCCeEEcccCC
Q 038776 138 EIPASISNCSNLLVVSLALNHLAGKIPSEFG--SLSKLQFLSTTA--NNLTGN-----IPSSL--GNLSSLRGLSLSRNG 206 (281)
Q Consensus 138 ~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~l~~--n~~~~~-----~~~~l--~~l~~L~~L~l~~n~ 206 (281)
.++. + .+++|++|++..+.+.......+. .+++|+.|+++. +...+. +...+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 3443 3 378999999988877643333343 788999998853 211111 11122 246889999998888
Q ss_pred CcccccccC---CCCCCCCeEecccCcCcCC----CCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEccccc
Q 038776 207 FYGSIPDTF---GGLKNLVNLSLVVNNLSGT----IPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 207 ~~~~~~~~~---~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N~ 279 (281)
+.+..+..+ ..+++|+.|+++.|.+.+. ++..+.++++|+.|++++|.+++..-..+...+ ...+++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 764332222 2467899999988888753 233345568899999998888765544444322 4557777653
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.16 E-value=2.3e-11 Score=103.97 Aligned_cols=180 Identities=13% Similarity=0.170 Sum_probs=119.4
Q ss_pred CCCCEEECCCCCCcc-C-------CchhccCCCcccEeeccCCccc---------ccCCccCcCCCCCcEEEcccCCCCC
Q 038776 99 SFLQKLDLRNNSFTN-E-------IPPQIGHLRRLQILYLQINSFD---------GEIPASISNCSNLLVVSLALNHLAG 161 (281)
Q Consensus 99 ~~L~~L~l~~n~~~~-~-------~~~~~~~l~~L~~L~l~~n~~~---------~~~p~~l~~l~~L~~L~l~~n~~~~ 161 (281)
..++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+|+|+.|.++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 346777777554432 1 1233456789999998765321 123344567899999999887321
Q ss_pred CCchhcCCCCCCCEEeCcCCcccccCCcccc--CCCCCCeEEcccC--CCcc-----cccccC--CCCCCCCeEecccCc
Q 038776 162 KIPSEFGSLSKLQFLSTTANNLTGNIPSSLG--NLSSLRGLSLSRN--GFYG-----SIPDTF--GGLKNLVNLSLVVNN 230 (281)
Q Consensus 162 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n--~~~~-----~~~~~~--~~l~~L~~L~l~~n~ 230 (281)
.++. + .+++|+.|++..+.+.......+. .+++|++|+|+.+ ...+ .+...+ ..+++|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 3333 3 389999999998887644333343 6899999998632 1111 111222 357899999999998
Q ss_pred CcCCCCccc---cCCCCCCEEEcccCcccccCChhhhh---CCCCCcEEEcccccCC
Q 038776 231 LSGTIPPLI---FNISSIQTFDVGSNYIEGEMPLDLGT---TLPNLRIFSITGNQFT 281 (281)
Q Consensus 231 ~~~~~~~~l---~~~~~L~~L~l~~n~l~~~~p~~~~~---~~~~L~~L~l~~N~l~ 281 (281)
+....+..+ ..+++|++|+++.|.+.+..+..+.. .+++|+.|++++|.++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 874333333 24689999999999998754444432 3799999999999875
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=3.1e-09 Score=82.17 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=62.1
Q ss_pred ccCcCCCCCcEEEcccC-CCCCC----CchhcCCCCCCCEEeCcCCccccc----CCccccCCCCCCeEEcccCCCccc-
Q 038776 141 ASISNCSNLLVVSLALN-HLAGK----IPSEFGSLSKLQFLSTTANNLTGN----IPSSLGNLSSLRGLSLSRNGFYGS- 210 (281)
Q Consensus 141 ~~l~~l~~L~~L~l~~n-~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~- 210 (281)
..+...++|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 33455677777777777 66532 223345556667777776666532 122333345666666666666532
Q ss_pred ---ccccCCCCCCCCeEec--ccCcCcCC----CCccccCCCCCCEEEcccCccc
Q 038776 211 ---IPDTFGGLKNLVNLSL--VVNNLSGT----IPPLIFNISSIQTFDVGSNYIE 256 (281)
Q Consensus 211 ---~~~~~~~l~~L~~L~l--~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~ 256 (281)
+...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334444555666666 55555422 2233334455666666666554
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.69 E-value=8.2e-11 Score=95.91 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=33.0
Q ss_pred CCCCCcEEEcccCCCCC--CCchhcCCCCCCCEEeCcCCcccccCCccccCCC--CCCeEEcccCCCccc
Q 038776 145 NCSNLLVVSLALNHLAG--KIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLS--SLRGLSLSRNGFYGS 210 (281)
Q Consensus 145 ~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~ 210 (281)
++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 45666666666666664 2334444556666666666655532 1122222 555555555555443
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=7.7e-09 Score=79.95 Aligned_cols=115 Identities=11% Similarity=0.106 Sum_probs=56.4
Q ss_pred hccCCCcccEeeccCC-cccc----cCCccCcCCCCCcEEEcccCCCCCC----CchhcCCCCCCCEEeCcCCccccc--
Q 038776 118 QIGHLRRLQILYLQIN-SFDG----EIPASISNCSNLLVVSLALNHLAGK----IPSEFGSLSKLQFLSTTANNLTGN-- 186 (281)
Q Consensus 118 ~~~~l~~L~~L~l~~n-~~~~----~~p~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~-- 186 (281)
.+...++|++|++++| .+.. .+...+...++|++|++++|.+... +...+...++|++|++++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445555666666655 5442 1223334455566666666655432 122233445566666666655432
Q ss_pred --CCccccCCCCCCeEEc--ccCCCccc----ccccCCCCCCCCeEecccCcCc
Q 038776 187 --IPSSLGNLSSLRGLSL--SRNGFYGS----IPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 187 --~~~~l~~l~~L~~L~l--~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~ 232 (281)
+...+...++|++|++ ++|.+.+. +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333444455666666 55555432 2223333455666666655543
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.53 E-value=9.3e-08 Score=77.85 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=45.1
Q ss_pred CCCCCCeEEcccCCCcc--cccccCCCCCCCCeEecccCcCcCCCCccccCCC--CCCEEEcccCcccccCCh------h
Q 038776 193 NLSSLRGLSLSRNGFYG--SIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNIS--SIQTFDVGSNYIEGEMPL------D 262 (281)
Q Consensus 193 ~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~~p~------~ 262 (281)
++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|++.+.+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34556666666666554 2334444566666666666666532 2222222 677777777777665552 2
Q ss_pred hhhCCCCCcEEE
Q 038776 263 LGTTLPNLRIFS 274 (281)
Q Consensus 263 ~~~~~~~L~~L~ 274 (281)
+...+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 333477777765
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=1.8e-06 Score=74.58 Aligned_cols=194 Identities=13% Similarity=0.039 Sum_probs=110.0
Q ss_pred CcEEEEEcCCCCcceecCccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccc-----------------
Q 038776 75 QRVTILDLQNLKLAGTLPPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDG----------------- 137 (281)
Q Consensus 75 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~----------------- 137 (281)
..++.+.+..+. ...-...|..+..|+.+.+..+ +......+|.++..|+.+.+..+....
T Consensus 162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~ 239 (394)
T 4fs7_A 162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPD 239 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECT
T ss_pred CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECC
Confidence 567777776543 2233456788888999888766 332344567777777776665443210
Q ss_pred ----cCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccc
Q 038776 138 ----EIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPD 213 (281)
Q Consensus 138 ----~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 213 (281)
.-...+..+..|+.+.+..+... .....+..+..++.+....+.+ ....+..+.+|+.+.+..+ +......
T Consensus 240 ~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~ 314 (394)
T 4fs7_A 240 SFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEE 314 (394)
T ss_dssp TCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTT
T ss_pred CceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechh
Confidence 11122334444555554443222 2222344444444444433221 1234555667777776554 4433445
Q ss_pred cCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776 214 TFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 214 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
.|.++.+|+.+++..+ ++..-...+.++.+|+.+.+..+ ++ .+....+.++++|+.+++..+
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 6777788888887544 44344566777788888888665 44 555555666888888877654
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.42 E-value=1e-05 Score=69.82 Aligned_cols=86 Identities=12% Similarity=0.216 Sum_probs=53.3
Q ss_pred cccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCC
Q 038776 190 SLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPN 269 (281)
Q Consensus 190 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 269 (281)
++.++++|+.+.+.. .+.......|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++ .+....+.+|++
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~ 358 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTA 358 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTT
T ss_pred ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCC
Confidence 344455555555532 233233445667778888887654 44334556777788888888644 44 566666666888
Q ss_pred CcEEEccccc
Q 038776 270 LRIFSITGNQ 279 (281)
Q Consensus 270 L~~L~l~~N~ 279 (281)
|+.+++.+|.
T Consensus 359 L~~i~~~~~~ 368 (394)
T 4gt6_A 359 LNNIEYSGSR 368 (394)
T ss_dssp CCEEEESSCH
T ss_pred CCEEEECCce
Confidence 8888887663
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.33 E-value=1.1e-05 Score=69.64 Aligned_cols=176 Identities=14% Similarity=0.019 Sum_probs=109.1
Q ss_pred CccCcCCCCCCEEECCCCCCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCC
Q 038776 92 PPHIGNLSFLQKLDLRNNSFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLS 171 (281)
Q Consensus 92 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 171 (281)
...|..+.+|+.+.+..+... ....+|.++.+|+.+.+..+ +.......+.++..|+.+.+..+... +........
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 346888999999999866433 45567889999999999876 33244556777777777766554322 111222233
Q ss_pred CCCEEeC-----------------------cCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEeccc
Q 038776 172 KLQFLST-----------------------TANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVV 228 (281)
Q Consensus 172 ~L~~L~l-----------------------~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 228 (281)
+|+.+.+ ..+... .....+.....++.+....+. .....+..+.+|+.+.+..
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECT
T ss_pred CCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee---ecccccccccccccccccc
Confidence 4444444 332221 222333344444444433321 1223466778888888865
Q ss_pred CcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776 229 NNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 229 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
+ ++..-...+.++.+|+.+++..+ ++ .+....+.++.+|+.+++..|
T Consensus 307 ~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 307 S-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred c-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence 5 44344567888899999999754 55 566666667999999998765
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.33 E-value=2.6e-07 Score=70.16 Aligned_cols=109 Identities=11% Similarity=0.168 Sum_probs=72.4
Q ss_pred CchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCC-CcccccccCCCC----CCCCeEecccCc-CcCCCC
Q 038776 163 IPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNG-FYGSIPDTFGGL----KNLVNLSLVVNN-LSGTIP 236 (281)
Q Consensus 163 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~ 236 (281)
+|.....-..|+.|++++|.++......+..+++|++|++++|. +++..-..+..+ ++|++|++++|. ++..--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433334578899999988876655667788899999999885 665443444443 468899998874 765444
Q ss_pred ccccCCCCCCEEEcccCc-cccc--CChhhhhCCCCCc
Q 038776 237 PLIFNISSIQTFDVGSNY-IEGE--MPLDLGTTLPNLR 271 (281)
Q Consensus 237 ~~l~~~~~L~~L~l~~n~-l~~~--~p~~~~~~~~~L~ 271 (281)
..+..+++|++|+++++. +++. ....+...+|+++
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred HHHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 556778889999998884 5532 1223334467665
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=3.7e-05 Score=66.30 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=38.3
Q ss_pred ccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcccc
Q 038776 213 DTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSITGN 278 (281)
Q Consensus 213 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~~N 278 (281)
..+.+++.|+.+.+. +.++......+.++.+|+.+++..+ ++ .+....+.+|.+|+.+.+..+
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS 344 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc
Confidence 344555666666654 2333233456667788888888654 44 455555666888888887543
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=3.2e-07 Score=69.65 Aligned_cols=84 Identities=12% Similarity=0.040 Sum_probs=48.9
Q ss_pred CcccEeeccCCcccccCCccCcCCCCCcEEEcccCC-CCCCCchhcCCC----CCCCEEeCcCCc-ccccCCccccCCCC
Q 038776 123 RRLQILYLQINSFDGEIPASISNCSNLLVVSLALNH-LAGKIPSEFGSL----SKLQFLSTTANN-LTGNIPSSLGNLSS 196 (281)
Q Consensus 123 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~-~~~~~~~~l~~l~~ 196 (281)
.+|+.||+++|.++..--..+..+++|++|+|++|. ++...-..++.+ ++|++|++++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467788888877764444445667777777777764 443333334443 356666666653 54433344455566
Q ss_pred CCeEEcccCC
Q 038776 197 LRGLSLSRNG 206 (281)
Q Consensus 197 L~~L~l~~n~ 206 (281)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.00 E-value=0.00023 Score=60.86 Aligned_cols=127 Identities=13% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeE
Q 038776 145 NCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNL 224 (281)
Q Consensus 145 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 224 (281)
...+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....++..+.+|+.+.+..+ +.......+..+++|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3444555444332 11122233445555555555433 22222334445555555555432 221223345555566666
Q ss_pred ecccCcCcCCCCccccCCCCCCEEEcccCcccccCChhhhhCCCCCcEEEcc
Q 038776 225 SLVVNNLSGTIPPLIFNISSIQTFDVGSNYIEGEMPLDLGTTLPNLRIFSIT 276 (281)
Q Consensus 225 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~l~ 276 (281)
.+.++.++..-...+.++.+|+.+.+..+ ++ .+....+.++.+|+.+.+.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence 65555554333445555555666655433 33 3333334445555555543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.97 E-value=0.00018 Score=61.52 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=86.8
Q ss_pred hccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEeCcCCcccccCCccccCCCCC
Q 038776 118 QIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALNHLAGKIPSEFGSLSKLQFLSTTANNLTGNIPSSLGNLSSL 197 (281)
Q Consensus 118 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 197 (281)
.+.....|+.+.+..+ +.......+.++..|+.+.+..+ ++......+..+.+|+.+.+..+ +.......+..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445556666666543 22233445677788888888765 33334455777888888887544 432334567778888
Q ss_pred CeEEcccCCCcccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccC
Q 038776 198 RGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSN 253 (281)
Q Consensus 198 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 253 (281)
+.+.+.++.++..-...|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 88888887777455667888888888888654 44344567778888888877544
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.44 E-value=0.00026 Score=50.91 Aligned_cols=56 Identities=27% Similarity=0.396 Sum_probs=34.6
Q ss_pred eEEcccCCCc-ccccccCCCCCCCCeEecccCcCcCCCCccccCCCCCCEEEcccCccc
Q 038776 199 GLSLSRNGFY-GSIPDTFGGLKNLVNLSLVVNNLSGTIPPLIFNISSIQTFDVGSNYIE 256 (281)
Q Consensus 199 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 256 (281)
.++.++++++ ..+|..+ .++++.|+|++|+++...+..+..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666664 2445433 245777777777777544455666677777777777653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.34 E-value=4.1e-05 Score=59.08 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=31.2
Q ss_pred CCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCc---CcC----CCCccccCCCCCCEEEcccCcc
Q 038776 195 SSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNN---LSG----TIPPLIFNISSIQTFDVGSNYI 255 (281)
Q Consensus 195 ~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~---~~~----~~~~~l~~~~~L~~L~l~~n~l 255 (281)
+.|++|+|++|.+.+. +.+.+..-+.|+.|+|++|. +.. .+...+..-+.|+.|+++.|.+
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 4566666666665432 22334444556666665432 221 1223444556667777766654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=0.00014 Score=56.15 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=73.6
Q ss_pred CCCCCCCEEeCcCC-cccc----cCCccccCCCCCCeEEcccCCCccc----ccccCCCCCCCCeEecccCcCcCC----
Q 038776 168 GSLSKLQFLSTTAN-NLTG----NIPSSLGNLSSLRGLSLSRNGFYGS----IPDTFGGLKNLVNLSLVVNNLSGT---- 234 (281)
Q Consensus 168 ~~l~~L~~L~l~~n-~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~---- 234 (281)
..-+.|+.|+++++ .+.. .+...+..-+.|+.|+|++|.+.+. +.+.+..-++|+.|+|++|.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34455666666654 4432 1234455557888889988888743 333444558999999999999743
Q ss_pred CCccccCCCCCCEEEcccC---cccccC----ChhhhhCCCCCcEEEccccc
Q 038776 235 IPPLIFNISSIQTFDVGSN---YIEGEM----PLDLGTTLPNLRIFSITGNQ 279 (281)
Q Consensus 235 ~~~~l~~~~~L~~L~l~~n---~l~~~~----p~~~~~~~~~L~~L~l~~N~ 279 (281)
+-..+...+.|++|+|++| .+.+.. ...+.. -++|+.|+++.|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~-N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh-CCCcCeEeccCCC
Confidence 3345667788999999865 444332 223333 6889999998875
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.84 E-value=0.003 Score=45.30 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=44.4
Q ss_pred CEEeCcCCccc-ccCCccccCCCCCCeEEcccCCCcccccccCCCCCCCCeEecccCcCc
Q 038776 174 QFLSTTANNLT-GNIPSSLGNLSSLRGLSLSRNGFYGSIPDTFGGLKNLVNLSLVVNNLS 232 (281)
Q Consensus 174 ~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 232 (281)
..++.+++.++ ..+|..+ .+++++|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36778888776 3456443 357999999999999666667888999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=49.13 E-value=33 Score=22.57 Aligned_cols=13 Identities=0% Similarity=0.312 Sum_probs=5.8
Q ss_pred CcCCCCCCEEECC
Q 038776 95 IGNLSFLQKLDLR 107 (281)
Q Consensus 95 ~~~l~~L~~L~l~ 107 (281)
|.++..|+.+.|.
T Consensus 16 F~~c~~L~~i~iP 28 (100)
T 2lz0_A 16 FAGNTVIREITVQ 28 (100)
T ss_dssp TTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcC
Confidence 4444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.28 E-value=62 Score=21.19 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=32.0
Q ss_pred CCccCCchhccCCCcccEeeccCCcccccCCccCcCCCCCcEEEcccC
Q 038776 110 SFTNEIPPQIGHLRRLQILYLQINSFDGEIPASISNCSNLLVVSLALN 157 (281)
Q Consensus 110 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 157 (281)
.++..-..+|.++.+|+.+.+-.+- +..-...|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 3443445578888888888887653 3244557888888888888653
Done!