Your job contains 1 sequence.
>038777
KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQ
KRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDI
DYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASP
PYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVDTEPVDKTRHWGDLEEAEDEIEE
ELEDGIESVESQRKEPERTLYQVLEEKEERIAPRTLLVTTHTVKRVDLLKGQQTDRVDAI
LQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVAENEKKRKRQMQEKEGKSKKNLK
F
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038777
(361 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0031493 - symbol:CG3605 species:7227 "Drosophila m... 673 1.2e-77 3
UNIPROTKB|F1MC31 - symbol:SF3B2 "Uncharacterized protein"... 685 3.6e-76 2
UNIPROTKB|E2RL65 - symbol:SF3B2 "Uncharacterized protein"... 685 3.6e-76 2
UNIPROTKB|E9PPJ0 - symbol:SF3B2 "Splicing factor 3B subun... 685 3.6e-76 2
UNIPROTKB|Q13435 - symbol:SF3B2 "Splicing factor 3B subun... 685 3.6e-76 2
UNIPROTKB|F1RU38 - symbol:SF3B2 "Uncharacterized protein"... 685 3.6e-76 2
ZFIN|ZDB-GENE-070928-1 - symbol:sf3b2 "splicing factor 3b... 687 1.6e-75 2
DICTYBASE|DDB_G0284555 - symbol:sf3b2 "splicing factor 3B... 639 5.3e-69 2
WB|WBGene00021004 - symbol:W03F9.10 species:6239 "Caenorh... 573 1.1e-62 2
UNIPROTKB|O16997 - symbol:W03F9.10 "Protein W03F9.10" spe... 573 1.1e-62 2
POMBASE|SPAC22F8.10c - symbol:sap145 "U2 snRNP-associated... 602 4.2e-61 2
ASPGD|ASPL0000031751 - symbol:AN5098 species:162425 "Emer... 615 5.0e-60 1
UNIPROTKB|G4NAE3 - symbol:MGG_03182 "Splicing factor 3B s... 573 1.4e-55 1
CGD|CAL0000205 - symbol:orf19.7581 species:5476 "Candida ... 421 5.9e-42 2
UNIPROTKB|Q5ACR1 - symbol:CUS1 "Potential spliceosomal U2... 421 5.9e-42 2
SGD|S000004853 - symbol:CUS1 "Protein required for assemb... 370 4.6e-34 1
UNIPROTKB|H0YEX5 - symbol:SF3B2 "Splicing factor 3B subun... 251 1.6e-30 2
TAIR|locus:2200126 - symbol:AT1G11520 "AT1G11520" species... 225 1.1e-18 1
RGD|1307159 - symbol:Sf3b2 "splicing factor 3b, subunit 2... 101 8.4e-05 1
>FB|FBgn0031493 [details] [associations]
symbol:CG3605 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR007180 Pfam:PF04037 EMBL:AE014134 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0005686 eggNOG:COG5182
GeneTree:ENSGT00390000006734 KO:K12829 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 OMA:KNERIGG EMBL:AY061487
RefSeq:NP_608739.1 UniGene:Dm.285 IntAct:Q9VQK7 MINT:MINT-761142
STRING:Q9VQK7 EnsemblMetazoa:FBtr0077669 GeneID:33514
KEGG:dme:Dmel_CG3605 UCSC:CG3605-RA FlyBase:FBgn0031493
InParanoid:Q9VQK7 OrthoDB:EOG40CFZ5 GenomeRNAi:33514 NextBio:783978
Uniprot:Q9VQK7
Length = 749
Score = 673 (242.0 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 134/211 (63%), Positives = 159/211 (75%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSK++ K R+ +AE+K+ SRPDVVE+ D TA DPKLLV LKAYRNTV VPRHWC KR
Sbjct: 299 LSKRKLKKLTRLSVAELKQLVSRPDVVEMHDVTARDPKLLVQLKAYRNTVQVPRHWCFKR 358
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
K+LQGKRGI K PF LP FI TGI ++R++ E+ED+K LK K ER++P+M K+DIDY
Sbjct: 359 KYLQGKRGIEKPPFDLPAFIKKTGIMEMRESLQEREDAKTLKAKMRERVRPKMGKIDIDY 418
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
L+DAFFK+QTKP++T HGDLYYEGKEFE + L E KP LS ELR ALG+P
Sbjct: 419 QKLHDAFFKWQTKPRMTIHGDLYYEGKEFETR-LKEKKPGDLSEELRIALGMPVGPNSHK 477
Query: 178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIP 208
PP+L QRYG PPSYPNLKIPG NAPIP
Sbjct: 478 IPPPWLIAQQRYGPPPSYPNLKIPGLNAPIP 508
Score = 102 (41.0 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 31/101 (30%), Positives = 56/101 (55%)
Query: 249 VESQRKEPER-TLYQVLEEKE-ERIAPRTLLVTTHTVKRVDLLKGQQ------TDR---V 297
+E++ ++ E LYQVL EK +RI +++ +TH +Q TDR V
Sbjct: 621 IEAEMEDNETPVLYQVLPEKRTDRIGA-SMMGSTHVYDVSGSGANKQPPVRSTTDREGIV 679
Query: 298 DAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSGMVA 338
+ L P EL++ ++ + +YE+ +E++ H Q++D S M+A
Sbjct: 680 ELALDPSELDLDNDAMAQRYEQQMREQQNHLQKEDLSDMLA 720
Score = 38 (18.4 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 5 KKRKKHGRRMR 15
KKRKK R++R
Sbjct: 135 KKRKKQNRKIR 145
>UNIPROTKB|F1MC31 [details] [associations]
symbol:SF3B2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003034
InterPro:IPR007180 Pfam:PF04037 SMART:SM00513 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00390000006734 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 GO:GO:0005689 OMA:MKTKMRE
EMBL:DAAA02063577 IPI:IPI00905628 UniGene:Bt.1943
Ensembl:ENSBTAT00000003602 ArrayExpress:F1MC31 Uniprot:F1MC31
Length = 896
Score = 685 (246.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 137/231 (59%), Positives = 167/231 (72%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSKK+ + R +AE+K+ +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KR
Sbjct: 450 LSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKR 509
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
K+LQGKRGI K PF LPDFI TGI+++R+A EKE+ K +K K E+++P+M K+DIDY
Sbjct: 510 KYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDY 569
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
L+DAFFK+QTKPKLT HGDLYYEGKEFE + L E KP LS ELR +LG+P
Sbjct: 570 QKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHK 628
Query: 178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
PP+L MQRYG PPSYPNLKIPG N+PIP+ + PVD+T
Sbjct: 629 VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 679
Score = 101 (40.6 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 260 LYQVLEEKEERIAPRTLLVTTHTVKRVDLL--KGQ--QTDRVDAILQPEELEVMDNVLPA 315
L+ VL EK ++ +TH ++ KG + V+ L PEELE+ +
Sbjct: 784 LFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQ 843
Query: 316 KYEEAKQEEKLHSQRQDFSGMVA 338
KYEE +E++ +++DFS MVA
Sbjct: 844 KYEEHVREQQAQVEKEDFSDMVA 866
>UNIPROTKB|E2RL65 [details] [associations]
symbol:SF3B2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR003034 InterPro:IPR007180 Pfam:PF02037 Pfam:PF04037
PROSITE:PS50800 SMART:SM00513 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00390000006734 KO:K12829 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 GO:GO:0005689 CTD:10992 OMA:MKTKMRE
EMBL:AAEX03011631 RefSeq:XP_533224.2 Ensembl:ENSCAFT00000020708
GeneID:476015 KEGG:cfa:476015 Uniprot:E2RL65
Length = 895
Score = 685 (246.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 137/231 (59%), Positives = 167/231 (72%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSKK+ + R +AE+K+ +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KR
Sbjct: 449 LSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKR 508
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
K+LQGKRGI K PF LPDFI TGI+++R+A EKE+ K +K K E+++P+M K+DIDY
Sbjct: 509 KYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDY 568
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
L+DAFFK+QTKPKLT HGDLYYEGKEFE + L E KP LS ELR +LG+P
Sbjct: 569 QKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHK 627
Query: 178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
PP+L MQRYG PPSYPNLKIPG N+PIP+ + PVD+T
Sbjct: 628 VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 678
Score = 101 (40.6 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 260 LYQVLEEKEERIAPRTLLVTTHTVKRVDLL--KGQ--QTDRVDAILQPEELEVMDNVLPA 315
L+ VL EK ++ +TH ++ KG + V+ L PEELE+ +
Sbjct: 783 LFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQ 842
Query: 316 KYEEAKQEEKLHSQRQDFSGMVA 338
KYEE +E++ +++DFS MVA
Sbjct: 843 KYEEHVREQQAQVEKEDFSDMVA 865
>UNIPROTKB|E9PPJ0 [details] [associations]
symbol:SF3B2 "Splicing factor 3B subunit 2" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR003034 InterPro:IPR007180 Pfam:PF02037
Pfam:PF04037 PROSITE:PS50800 SMART:SM00513 GO:GO:0005634
GO:GO:0003676 EMBL:AP006287 InterPro:IPR006568 Pfam:PF04046
SMART:SM00581 HGNC:HGNC:10769 IPI:IPI00978402
ProteinModelPortal:E9PPJ0 SMR:E9PPJ0 PRIDE:E9PPJ0
Ensembl:ENST00000528302 ArrayExpress:E9PPJ0 Bgee:E9PPJ0
Uniprot:E9PPJ0
Length = 878
Score = 685 (246.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 137/231 (59%), Positives = 167/231 (72%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSKK+ + R +AE+K+ +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KR
Sbjct: 432 LSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKR 491
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
K+LQGKRGI K PF LPDFI TGI+++R+A EKE+ K +K K E+++P+M K+DIDY
Sbjct: 492 KYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDY 551
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
L+DAFFK+QTKPKLT HGDLYYEGKEFE + L E KP LS ELR +LG+P
Sbjct: 552 QKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHK 610
Query: 178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
PP+L MQRYG PPSYPNLKIPG N+PIP+ + PVD+T
Sbjct: 611 VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 661
Score = 101 (40.6 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 260 LYQVLEEKEERIAPRTLLVTTHTVKRVDLL--KGQ--QTDRVDAILQPEELEVMDNVLPA 315
L+ VL EK ++ +TH ++ KG + V+ L PEELE+ +
Sbjct: 766 LFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQ 825
Query: 316 KYEEAKQEEKLHSQRQDFSGMVA 338
KYEE +E++ +++DFS MVA
Sbjct: 826 KYEEHVREQQAQVEKEDFSDMVA 848
>UNIPROTKB|Q13435 [details] [associations]
symbol:SF3B2 "Splicing factor 3B subunit 2" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR003034
InterPro:IPR007180 Pfam:PF02037 Pfam:PF04037 PROSITE:PS50800
SMART:SM00513 GO:GO:0019048 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003676 GO:GO:0000398 GO:GO:0071013 eggNOG:COG5182 KO:K12829
InterPro:IPR006568 Pfam:PF04046 SMART:SM00581 GO:GO:0005689
EMBL:AK290850 EMBL:AK300016 EMBL:BC000401 EMBL:BC007610
EMBL:BC014125 EMBL:BC053577 EMBL:U41371 IPI:IPI00221106
RefSeq:NP_006833.2 UniGene:Hs.406423 PDB:2DO5 PDBsum:2DO5
ProteinModelPortal:Q13435 SMR:Q13435 IntAct:Q13435
MINT:MINT-4915443 STRING:Q13435 PhosphoSite:Q13435 DMDM:296452908
PaxDb:Q13435 PRIDE:Q13435 DNASU:10992 Ensembl:ENST00000322535
GeneID:10992 KEGG:hsa:10992 UCSC:uc001ogy.1 CTD:10992
GeneCards:GC11P065827 H-InvDB:HIX0009823 HGNC:HGNC:10769
HPA:HPA045028 MIM:605591 neXtProt:NX_Q13435 PharmGKB:PA35687
HOVERGEN:HBG054023 InParanoid:Q13435 OMA:MKTKMRE OrthoDB:EOG4GB75Q
ChEMBL:CHEMBL1229011 EvolutionaryTrace:Q13435 GenomeRNAi:10992
NextBio:41771 PMAP-CutDB:Q13435 ArrayExpress:Q13435 Bgee:Q13435
CleanEx:HS_SF3B2 Genevestigator:Q13435 GermOnline:ENSG00000087365
Uniprot:Q13435
Length = 895
Score = 685 (246.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 137/231 (59%), Positives = 167/231 (72%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSKK+ + R +AE+K+ +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KR
Sbjct: 449 LSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKR 508
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
K+LQGKRGI K PF LPDFI TGI+++R+A EKE+ K +K K E+++P+M K+DIDY
Sbjct: 509 KYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDY 568
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
L+DAFFK+QTKPKLT HGDLYYEGKEFE + L E KP LS ELR +LG+P
Sbjct: 569 QKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHK 627
Query: 178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
PP+L MQRYG PPSYPNLKIPG N+PIP+ + PVD+T
Sbjct: 628 VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 678
Score = 101 (40.6 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 260 LYQVLEEKEERIAPRTLLVTTHTVKRVDLL--KGQ--QTDRVDAILQPEELEVMDNVLPA 315
L+ VL EK ++ +TH ++ KG + V+ L PEELE+ +
Sbjct: 783 LFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQ 842
Query: 316 KYEEAKQEEKLHSQRQDFSGMVA 338
KYEE +E++ +++DFS MVA
Sbjct: 843 KYEEHVREQQAQVEKEDFSDMVA 865
>UNIPROTKB|F1RU38 [details] [associations]
symbol:SF3B2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR003034
InterPro:IPR007180 Pfam:PF04037 SMART:SM00513 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00390000006734 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 GO:GO:0005689 OMA:MKTKMRE EMBL:CU694743
Ensembl:ENSSSCT00000014162 Uniprot:F1RU38
Length = 879
Score = 685 (246.2 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 137/231 (59%), Positives = 167/231 (72%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSKK+ + R +AE+K+ +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KR
Sbjct: 433 LSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKR 492
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
K+LQGKRGI K PF LPDFI TGI+++R+A EKE+ K +K K E+++P+M K+DIDY
Sbjct: 493 KYLQGKRGIEKPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDY 552
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DV 177
L+DAFFK+QTKPKLT HGDLYYEGKEFE + L E KP LS ELR +LG+P
Sbjct: 553 QKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHK 611
Query: 178 ASPPYLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
PP+L MQRYG PPSYPNLKIPG N+PIP+ + PVD+T
Sbjct: 612 VPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 662
Score = 101 (40.6 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 260 LYQVLEEKEERIAPRTLLVTTHTVKRVDLL--KGQ--QTDRVDAILQPEELEVMDNVLPA 315
L+ VL EK ++ +TH ++ KG + V+ L PEELE+ +
Sbjct: 767 LFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQ 826
Query: 316 KYEEAKQEEKLHSQRQDFSGMVA 338
KYEE +E++ +++DFS MVA
Sbjct: 827 KYEEHVREQQAQVEKEDFSDMVA 849
>ZFIN|ZDB-GENE-070928-1 [details] [associations]
symbol:sf3b2 "splicing factor 3b, subunit 2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR003034 InterPro:IPR007180 Pfam:PF02037 Pfam:PF04037
PROSITE:PS50800 SMART:SM00513 ZFIN:ZDB-GENE-070928-1 GO:GO:0005634
GO:GO:0003676 GeneTree:ENSGT00390000006734 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 EMBL:CABZ01073934 EMBL:CABZ01073935
IPI:IPI00484656 Ensembl:ENSDART00000015873 ArrayExpress:F1QLC5
Bgee:F1QLC5 Uniprot:F1QLC5
Length = 826
Score = 687 (246.9 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 134/212 (63%), Positives = 163/212 (76%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSKK+ + R+ +AE+K+ +RPDVVE+ D TA +PKLLV LKA RNTVPVPRHWC KR
Sbjct: 375 LSKKKLRRMNRLTVAELKQLVARPDVVEMHDVTAQEPKLLVHLKATRNTVPVPRHWCFKR 434
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
K+LQGKRGI K PF LP+FI TGI+++R+A EKED+K +K K E+++P+M K+DIDY
Sbjct: 435 KYLQGKRGIEKPPFELPEFIRRTGIQEMREALQEKEDAKTMKTKMREKVRPKMGKIDIDY 494
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVAS--- 179
L+DAFFK+Q KPKLT HGDLYYEGKEFE + L E KP LS ELR ALG+P +
Sbjct: 495 QKLHDAFFKWQIKPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRVALGMPTGPNSHK 553
Query: 180 --PPYLRNMQRYGAPPSYPNLKIPGFNAPIPQ 209
PP+L MQRYG PPSYPNLKIPG NAPIP+
Sbjct: 554 VPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPE 585
Score = 93 (37.8 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 277 LVTTHTVKRVDL-LKGQQTDRVDAILQPEELEVMDNVLPAKYEEAKQEEKLHSQRQDFSG 335
+ TT T ++V + + G + V+ L PEELE+ + KYEE +E+++ +++DFS
Sbjct: 736 MTTTVTSRKVGVSVLGGDSQGVEVALAPEELELDPMAMTQKYEEHVREQQV--EKEDFSD 793
Query: 336 MVA 338
MVA
Sbjct: 794 MVA 796
>DICTYBASE|DDB_G0284555 [details] [associations]
symbol:sf3b2 "splicing factor 3B subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR007180 Pfam:PF04037
dictyBase:DDB_G0284555 GenomeReviews:CM000153_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003723 EMBL:AAFI02000066 eggNOG:COG5182
KO:K12829 InterPro:IPR006568 Pfam:PF04046 SMART:SM00581 OMA:KNERIGG
RefSeq:XP_001134544.1 STRING:Q1ZXF6 EnsemblProtists:DDB0233170
GeneID:8624627 KEGG:ddi:DDB_G0284555 InParanoid:Q1ZXF6
ProtClustDB:CLSZ2847453 Uniprot:Q1ZXF6
Length = 625
Score = 639 (230.0 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 123/211 (58%), Positives = 152/211 (72%)
Query: 1 KGLSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQ 60
K LS K +K R++ + +K+ RPDVVE+ D + +P L+ +K+YRNT+PVP HWCQ
Sbjct: 167 KKLSNKERKRQRKLHLPILKQLVDRPDVVELHDVNSPNPGYLIAMKSYRNTIPVPAHWCQ 226
Query: 61 KRKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDI 120
K+K+LQGKRG K PF LP FIAATGI K+R+A EKE K KQKQ ER+QP+++KM I
Sbjct: 227 KKKYLQGKRGFVKPPFELPSFIAATGITKIREAILEKEKEMKSKQKQRERVQPKIRKMGI 286
Query: 121 DYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASP 180
DY L DAFF +QTKP L+ GDLYYEGKEFEV L KP LS EL+ ALG+ + P
Sbjct: 287 DYEVLRDAFFVHQTKPNLSIQGDLYYEGKEFEVN-LKNKKPGVLSDELKRALGMIEGYPP 345
Query: 181 PYLRNMQRYGAPPSYPNLKIPGFNAPIPQEA 211
P+L MQ YG PPSYPNLKIPG N+PIP+ A
Sbjct: 346 PWLIYMQTYGPPPSYPNLKIPGVNSPIPEGA 376
Score = 79 (32.9 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 285 RVDLLKGQQTDRVDAILQPEELE----VMDNVLPAKYEEAKQEEKLHSQRQDFSGMV 337
RVD++K Q++ V+ L P E+E + + +L KYE+A Q + ++D S ++
Sbjct: 547 RVDVIKSQRSAPVEITLNPSEVENGQEIDEELLKKKYEQATQALQKQRPKEDISDII 603
Score = 71 (30.1 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
Identities = 22/91 (24%), Positives = 46/91 (50%)
Query: 250 ESQRKEPERTLYQVLEEKEERIAPRTLLVTTHTVKRVDLLKGQQ-------TDRVDAILQ 302
+ Q+++P R LYQV+E++ + + L+ + H ++K QQ + RVD I
Sbjct: 495 QQQQQQP-RELYQVIEQQNKNSSSGGLMESAHRYNIPSVIKQQQQQQQQQNSSRVDVIKS 553
Query: 303 PEELEVMDNVLPAKYEEAKQ-EEKLHSQRQD 332
V + P++ E ++ +E+L ++ +
Sbjct: 554 QRSAPVEITLNPSEVENGQEIDEELLKKKYE 584
>WB|WBGene00021004 [details] [associations]
symbol:W03F9.10 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0018996 "molting cycle, collagen
and cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR007180 Pfam:PF04037 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0018996 GO:GO:0040011
GO:GO:0040035 eggNOG:COG5182 GeneTree:ENSGT00390000006734 KO:K12829
InterPro:IPR006568 Pfam:PF04046 SMART:SM00581 HOGENOM:HOG000159304
EMBL:FO081767 PIR:A88923 RefSeq:NP_503141.1
ProteinModelPortal:O16997 DIP:DIP-26706N IntAct:O16997
MINT:MINT-1108788 STRING:O16997 PaxDb:O16997
EnsemblMetazoa:W03F9.10.1 EnsemblMetazoa:W03F9.10.2 GeneID:178542
KEGG:cel:CELE_W03F9.10 UCSC:W03F9.10 CTD:178542 WormBase:W03F9.10
InParanoid:O16997 OMA:KNERIGG NextBio:901560 Uniprot:O16997
Length = 602
Score = 573 (206.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 114/212 (53%), Positives = 151/212 (71%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LS+++ + + IA++K R DVVE D T+ DP LLV +K+YRN+VPVPRHW KR
Sbjct: 147 LSRRKLRISLQPSIAKLKETTLRADVVEWADVTSRDPYLLVAMKSYRNSVPVPRHWNAKR 206
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
K+L GKRG + PF LPDFI TGI+ +R+A EKE+S+ LK K ER +P++ K+DIDY
Sbjct: 207 KYLAGKRGFERPPFELPDFIKRTGIQDMREALLEKEESQSLKSKMRERARPKLGKIDIDY 266
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVAS--- 179
L+DAFFK+QTKP +T G+LYYEGKE E + + KP +S ELR ALG+P ++
Sbjct: 267 QKLHDAFFKWQTKPAMTKMGELYYEGKEMEA-MMRDKKPGEMSDELRIALGMPIGSNAFK 325
Query: 180 --PPYLRNMQRYGAPPSYPNLKIPGFNAPIPQ 209
PP+L MQRYG PPS+P++KIPG NAPIP+
Sbjct: 326 FPPPWLIAMQRYGPPPSFPHIKIPGLNAPIPE 357
Score = 85 (35.0 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 261 YQVL-EEKEERIAPRTLLVTTHTVKRVDLLKGQ--QTDRVDAILQPEELEVMDNVLPAKY 317
Y ++ E+K ERI + ++ ++HT DL K + D V L PE +++ + L A+Y
Sbjct: 484 YHIIPEKKNERIGGQ-MMASSHTY---DLSKKHAVRDDGVQISLDPESIDMDEQGLAARY 539
Query: 318 EEAKQEEKLHSQ----RQDFSGMVA 338
EE +++K R+D + MVA
Sbjct: 540 EEQLRKQKHRDDDDEDREDLTDMVA 564
>UNIPROTKB|O16997 [details] [associations]
symbol:W03F9.10 "Protein W03F9.10" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007180 Pfam:PF04037 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0040035 eggNOG:COG5182
GeneTree:ENSGT00390000006734 KO:K12829 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 HOGENOM:HOG000159304 EMBL:FO081767
PIR:A88923 RefSeq:NP_503141.1 ProteinModelPortal:O16997
DIP:DIP-26706N IntAct:O16997 MINT:MINT-1108788 STRING:O16997
PaxDb:O16997 EnsemblMetazoa:W03F9.10.1 EnsemblMetazoa:W03F9.10.2
GeneID:178542 KEGG:cel:CELE_W03F9.10 UCSC:W03F9.10 CTD:178542
WormBase:W03F9.10 InParanoid:O16997 OMA:KNERIGG NextBio:901560
Uniprot:O16997
Length = 602
Score = 573 (206.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 114/212 (53%), Positives = 151/212 (71%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LS+++ + + IA++K R DVVE D T+ DP LLV +K+YRN+VPVPRHW KR
Sbjct: 147 LSRRKLRISLQPSIAKLKETTLRADVVEWADVTSRDPYLLVAMKSYRNSVPVPRHWNAKR 206
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
K+L GKRG + PF LPDFI TGI+ +R+A EKE+S+ LK K ER +P++ K+DIDY
Sbjct: 207 KYLAGKRGFERPPFELPDFIKRTGIQDMREALLEKEESQSLKSKMRERARPKLGKIDIDY 266
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVAS--- 179
L+DAFFK+QTKP +T G+LYYEGKE E + + KP +S ELR ALG+P ++
Sbjct: 267 QKLHDAFFKWQTKPAMTKMGELYYEGKEMEA-MMRDKKPGEMSDELRIALGMPIGSNAFK 325
Query: 180 --PPYLRNMQRYGAPPSYPNLKIPGFNAPIPQ 209
PP+L MQRYG PPS+P++KIPG NAPIP+
Sbjct: 326 FPPPWLIAMQRYGPPPSFPHIKIPGLNAPIPE 357
Score = 85 (35.0 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 261 YQVL-EEKEERIAPRTLLVTTHTVKRVDLLKGQ--QTDRVDAILQPEELEVMDNVLPAKY 317
Y ++ E+K ERI + ++ ++HT DL K + D V L PE +++ + L A+Y
Sbjct: 484 YHIIPEKKNERIGGQ-MMASSHTY---DLSKKHAVRDDGVQISLDPESIDMDEQGLAARY 539
Query: 318 EEAKQEEKLHSQ----RQDFSGMVA 338
EE +++K R+D + MVA
Sbjct: 540 EEQLRKQKHRDDDDEDREDLTDMVA 564
>POMBASE|SPAC22F8.10c [details] [associations]
symbol:sap145 "U2 snRNP-associated protein Sap145
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000245
"spliceosomal complex assembly" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005686 "U2
snRNP" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR007180 Pfam:PF04037 PomBase:SPAC22F8.10c GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681 GO:GO:0003723
GO:GO:0000245 GO:GO:0005686 eggNOG:COG5182 KO:K12829
OrthoDB:EOG4VMJPZ InterPro:IPR006568 Pfam:PF04046 SMART:SM00581
PIR:T38200 RefSeq:NP_594733.1 IntAct:Q9UUI3 STRING:Q9UUI3
EnsemblFungi:SPAC22F8.10c.1 GeneID:2541609 KEGG:spo:SPAC22F8.10c
HOGENOM:HOG000159304 OMA:NAVHENE NextBio:20802703 Uniprot:Q9UUI3
Length = 601
Score = 602 (217.0 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 118/209 (56%), Positives = 147/209 (70%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSKK+ + +RM +A++K + DVVE WD ++ DP L LKAY NTVPVPRHW QKR
Sbjct: 176 LSKKKLRKLKRMTVAQLKMLSEKADVVEWWDVSSLDPLFLTHLKAYPNTVPVPRHWNQKR 235
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
+L G+RGI +Q F LP +I ATGI ++R A +E E L+QK ER+QP+M K+DIDY
Sbjct: 236 DYLSGQRGIERQLFELPSYIRATGIVQMRNAVHENEADMPLRQKMRERVQPKMGKLDIDY 295
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPY 182
L+DAFF+YQTKP LT G+ Y+EGKE E + E +P +S ELREALGI A PP+
Sbjct: 296 QKLHDAFFRYQTKPVLTGFGECYFEGKELEA-DVKEKRPGDISEELREALGIAPGAPPPW 354
Query: 183 LRNMQRYGAPPSYPNLKIPGFNAPIPQEA 211
L MQRYG PPSYP+LKIPG N PIP A
Sbjct: 355 LFAMQRYGPPPSYPDLKIPGVNCPIPTGA 383
Score = 41 (19.5 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 258 RTLYQVLEEKEERIA 272
R LYQVL EK I+
Sbjct: 511 RDLYQVLPEKSTNIS 525
>ASPGD|ASPL0000031751 [details] [associations]
symbol:AN5098 species:162425 "Emericella nidulans"
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR007180 Pfam:PF04037 GO:GO:0005634
EMBL:BN001305 InterPro:IPR006568 Pfam:PF04046 SMART:SM00581
EnsemblFungi:CADANIAT00003081 OMA:LINQQRY Uniprot:C8VEV9
Length = 549
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 116/209 (55%), Positives = 152/209 (72%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSK+++K ++ +AE+K +P++VE D +A DP+LLV +KA+RN VPVP HW KR
Sbjct: 106 LSKRKRKELNKLSVAELKAMVKKPELVEWTDTSAPDPRLLVHIKAHRNVVPVPSHWSLKR 165
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
++L KRGI K PF LP FI TGI ++R A EK++ LKQKQ ER+QP+M ++DIDY
Sbjct: 166 EYLSSKRGIEKAPFSLPKFIQETGIAEMRDAALEKQEQATLKQKQRERVQPKMGRLDIDY 225
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPY 182
LY+AFF++QTKP+LT +G++YYEGKEFE Q ++P LS EL+EAL +P A PP+
Sbjct: 226 QKLYEAFFRFQTKPELTRYGEVYYEGKEFETNQ-RHLRPGELSSELKEALNMPPGAPPPW 284
Query: 183 LRNMQRYGAPPSYPNLKIPGFNAPIPQEA 211
L N QRYG PPSYP LKIPG NAP P A
Sbjct: 285 LINQQRYGPPPSYPALKIPGLNAPPPPGA 313
>UNIPROTKB|G4NAE3 [details] [associations]
symbol:MGG_03182 "Splicing factor 3B subunit 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR007180 Pfam:PF04037
GO:GO:0005634 EMBL:CM001234 KO:K12829 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 RefSeq:XP_003716807.1
EnsemblFungi:MGG_03182T0 GeneID:2676555 KEGG:mgr:MGG_03182
Uniprot:G4NAE3
Length = 614
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 118/210 (56%), Positives = 145/210 (69%)
Query: 3 LSK-KRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQK 61
LSK KRKK G+ + IAE+K P+VVE D +++DP+LLV +KA RN VPVP HW K
Sbjct: 135 LSKRKRKKLGK-LSIAELKALVRNPEVVEWHDVSSSDPRLLVQIKAQRNIVPVPGHWSLK 193
Query: 62 RKFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDID 121
R++L KRGI K PF LP+FIA TGI ++R A EK+ + LKQKQ ER+ P+M K+DID
Sbjct: 194 REYLSSKRGIEKPPFRLPNFIAETGITEMRDAVLEKQAEQTLKQKQRERVAPKMGKLDID 253
Query: 122 YPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPP 181
Y LYDAFF++Q KP LT GD+Y+EGKEFE KP LS L+EALG+ PP
Sbjct: 254 YQKLYDAFFRFQEKPPLTRFGDVYHEGKEFEA-DYRYFKPGELSDALKEALGMQPGFPPP 312
Query: 182 YLRNMQRYGAPPSYPNLKIPGFNAPIPQEA 211
+L QR G PPSYP LKIPG NAP+P A
Sbjct: 313 WLLQQQRMGPPPSYPTLKIPGLNAPLPNGA 342
>CGD|CAL0000205 [details] [associations]
symbol:orf19.7581 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
InterPro:IPR007180 Pfam:PF04037 CGD:CAL0000205 GO:GO:0005634
EMBL:AACQ01000032 eggNOG:COG5182 KO:K12829 InterPro:IPR006568
Pfam:PF04046 SMART:SM00581 HOGENOM:HOG000159304 RefSeq:XP_719343.1
STRING:Q5ACR1 GeneID:3639035 KEGG:cal:CaO19.7581 Uniprot:Q5ACR1
Length = 471
Score = 421 (153.3 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 89/232 (38%), Positives = 137/232 (59%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSK++ + ++ +A++K P VVE +D + DP LL+ +K+ N +PVP HW KR
Sbjct: 117 LSKRQLRIQNKIPLAKLKSSVKSPQVVEWYDVDSKDPYLLIAMKSQPNIIPVPSHWSSKR 176
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
+L +RGI K P+ LP +I ATGI ++R D + L+Q+Q E++QP+M K+D+DY
Sbjct: 177 NYLSSRRGIEKLPYQLPKYIQATGISEMRSG---GRDHRTLRQQQREKVQPKMGKLDMDY 233
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFE---VKQLMEMKPCTLSYELREALGIP--DV 177
LY AF K+Q KP++ +G+L+ EGK V + ++KP +S E+R AL +P D
Sbjct: 234 EKLYQAFSKFQIKPRVFPYGELFEEGKHSNDELVTKAAKIKPGIISLEMRSALSMPQNDG 293
Query: 178 ASPP-YLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVDTEPVDKTRHW 228
PP ++ M+ G PPSY +L IPG + K D+ +K +HW
Sbjct: 294 TIPPAWVTIMRDIGKPPSYKDLVIPGLDIKYSNAGYKDRNSDSRR-EKLKHW 344
Score = 40 (19.1 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 248 SVESQRKEPERTLYQVLEEKE 268
S + KE E+ LY+++EE++
Sbjct: 406 SANDKPKE-EKKLYKIIEERK 425
>UNIPROTKB|Q5ACR1 [details] [associations]
symbol:CUS1 "Potential spliceosomal U2 snRNP protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR007180 Pfam:PF04037
CGD:CAL0000205 GO:GO:0005634 EMBL:AACQ01000032 eggNOG:COG5182
KO:K12829 InterPro:IPR006568 Pfam:PF04046 SMART:SM00581
HOGENOM:HOG000159304 RefSeq:XP_719343.1 STRING:Q5ACR1
GeneID:3639035 KEGG:cal:CaO19.7581 Uniprot:Q5ACR1
Length = 471
Score = 421 (153.3 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 89/232 (38%), Positives = 137/232 (59%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LSK++ + ++ +A++K P VVE +D + DP LL+ +K+ N +PVP HW KR
Sbjct: 117 LSKRQLRIQNKIPLAKLKSSVKSPQVVEWYDVDSKDPYLLIAMKSQPNIIPVPSHWSSKR 176
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDY 122
+L +RGI K P+ LP +I ATGI ++R D + L+Q+Q E++QP+M K+D+DY
Sbjct: 177 NYLSSRRGIEKLPYQLPKYIQATGISEMRSG---GRDHRTLRQQQREKVQPKMGKLDMDY 233
Query: 123 PALYDAFFKYQTKPKLTTHGDLYYEGKEFE---VKQLMEMKPCTLSYELREALGIP--DV 177
LY AF K+Q KP++ +G+L+ EGK V + ++KP +S E+R AL +P D
Sbjct: 234 EKLYQAFSKFQIKPRVFPYGELFEEGKHSNDELVTKAAKIKPGIISLEMRSALSMPQNDG 293
Query: 178 ASPP-YLRNMQRYGAPPSYPNLKIPGFNAPIPQEADKPHVVDTEPVDKTRHW 228
PP ++ M+ G PPSY +L IPG + K D+ +K +HW
Sbjct: 294 TIPPAWVTIMRDIGKPPSYKDLVIPGLDIKYSNAGYKDRNSDSRR-EKLKHW 344
Score = 40 (19.1 bits), Expect = 5.9e-42, Sum P(2) = 5.9e-42
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 248 SVESQRKEPERTLYQVLEEKE 268
S + KE E+ LY+++EE++
Sbjct: 406 SANDKPKE-EKKLYKIIEERK 425
>SGD|S000004853 [details] [associations]
symbol:CUS1 "Protein required for assembly of U2 snRNP into
the spliceosome" species:4932 "Saccharomyces cerevisiae"
[GO:0005686 "U2 snRNP" evidence=IDA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IPI] [GO:0071004 "U2-type prespliceosome" evidence=IDA]
InterPro:IPR007180 InterPro:IPR027203 Pfam:PF04037 SGD:S000004853
GO:GO:0003723 EMBL:BK006946 GO:GO:0000245 GO:GO:0005686
GO:GO:0071004 EMBL:Z48756 EMBL:U27016 EMBL:AY723856 PIR:S56054
RefSeq:NP_013967.1 ProteinModelPortal:Q02554 DIP:DIP-910N
IntAct:Q02554 MINT:MINT-474095 STRING:Q02554 PaxDb:Q02554
EnsemblFungi:YMR240C GeneID:855281 KEGG:sce:YMR240C CYGD:YMR240c
eggNOG:COG5182 GeneTree:ENSGT00390000006734 HOGENOM:HOG000000768
KO:K12829 OMA:VEWYDVD OrthoDB:EOG4VMJPZ NextBio:978914
Genevestigator:Q02554 GermOnline:YMR240C InterPro:IPR006568
PANTHER:PTHR12785:SF4 Pfam:PF04046 SMART:SM00581 Uniprot:Q02554
Length = 436
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 79/214 (36%), Positives = 124/214 (57%)
Query: 3 LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
LS ++++ + ++++K P ++E +D A P LL +K +N +PVP HW K+
Sbjct: 121 LSARKRRKTEKPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVPSHWQSKK 180
Query: 63 KFLQGKRGIGKQPFHLPDFIAATGIEKVR----QACNEKEDSKKLKQKQSERMQPRMKKM 118
++L G+ +GK+PF LPD I T IE++R Q+ + +D K LK+ R+QP+M +
Sbjct: 181 EYLSGRSLLGKRPFELPDIIKKTNIEQMRSTLPQSGLDGQDEKSLKEASRARVQPKMGAL 240
Query: 119 DIDYPALYDAFFKYQT--KPK-LTTHGDLYYEGKE-FEV---KQLMEMK-PCTLSYELRE 170
D+DY L+D FFK KP L GD+YYE + FE K++++ K P +S ELR
Sbjct: 241 DLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHKRPGRISQELRA 300
Query: 171 ALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFN 204
+ +P+ PP+ M+ G P YP+LKI G N
Sbjct: 301 IMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLN 334
>UNIPROTKB|H0YEX5 [details] [associations]
symbol:SF3B2 "Splicing factor 3B subunit 2" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] GO:GO:0005634 EMBL:AP006287
InterPro:IPR006568 Pfam:PF04046 SMART:SM00581 HGNC:HGNC:10769
PRIDE:H0YEX5 Ensembl:ENST00000530981 Bgee:H0YEX5 Uniprot:H0YEX5
Length = 315
Score = 251 (93.4 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 56/99 (56%), Positives = 64/99 (64%)
Query: 135 KPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIP-----DVASPPYLRNMQRY 189
KPKLT HGDLYYEGKEFE + L E KP LS ELR +LG+P PP+L MQRY
Sbjct: 2 KPKLTIHGDLYYEGKEFETR-LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRY 60
Query: 190 GAPPSYPNLKIPGFNAPIPQEADKPHVVD---TEPVDKT 225
G PPSYPNLKIPG N+PIP+ + PVD+T
Sbjct: 61 GPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDET 99
Score = 101 (40.6 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 260 LYQVLEEKEERIAPRTLLVTTHTVKRVDLL--KGQ--QTDRVDAILQPEELEVMDNVLPA 315
L+ VL EK ++ +TH ++ KG + V+ L PEELE+ +
Sbjct: 203 LFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQ 262
Query: 316 KYEEAKQEEKLHSQRQDFSGMVA 338
KYEE +E++ +++DFS MVA
Sbjct: 263 KYEEHVREQQAQVEKEDFSDMVA 285
>TAIR|locus:2200126 [details] [associations]
symbol:AT1G11520 "AT1G11520" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=IDA] EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 eggNOG:COG5182
EMBL:AC011661 IPI:IPI00545648 RefSeq:NP_172619.1 UniGene:At.22888
UniGene:At.51571 EnsemblPlants:AT1G11520.1 GeneID:837695
KEGG:ath:AT1G11520 TAIR:At1g11520 PhylomeDB:Q9LPY3
Genevestigator:Q9LPY3 Uniprot:Q9LPY3
Length = 196
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 54/89 (60%), Positives = 63/89 (70%)
Query: 250 ESQRKEPERTLYQVLEEKEERI-APRTLLVTTHT------------VKRVDLLKGQQTDR 296
+ QRKEP+R LYQVLEEK E + AP TLL TTHT KRVDLL+GQ+TDR
Sbjct: 110 KEQRKEPDRALYQVLEEKGESVVAPGTLLRTTHTYVIKTGTQDKTGTKRVDLLRGQKTDR 169
Query: 297 VDAILQPEELEVMDNVLPAKYEEAKQEEK 325
VD LQPEEL+ M NVL +YEEA++EEK
Sbjct: 170 VDFSLQPEELDAMGNVL--QYEEAREEEK 196
>RGD|1307159 [details] [associations]
symbol:Sf3b2 "splicing factor 3b, subunit 2" species:10116
"Rattus norvegicus" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] RGD:1307159 GO:GO:0071013 GO:GO:0005689 EMBL:CH473953
IPI:IPI00952297 UniGene:Rn.103341 Ensembl:ENSRNOT00000067303
UCSC:RGD:1307159 Uniprot:D4A9C1
Length = 138
Score = 101 (40.6 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 260 LYQVLEEKEERIAPRTLLVTTHTVKRVDLL--KGQ--QTDRVDAILQPEELEVMDNVLPA 315
L+ VL EK ++ +TH ++ KG + V+ L PEELE+ +
Sbjct: 26 LFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQ 85
Query: 316 KYEEAKQEEKLHSQRQDFSGMVA 338
KYEE +E++ +++DFS MVA
Sbjct: 86 KYEEHVREQQAQVEKEDFSDMVA 108
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 361 328 0.00088 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 607 (65 KB)
Total size of DFA: 219 KB (2121 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.18u 0.10s 32.28t Elapsed: 00:00:01
Total cpu time: 32.18u 0.10s 32.28t Elapsed: 00:00:01
Start: Mon May 20 23:08:22 2013 End: Mon May 20 23:08:23 2013