BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038777
         (361 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9UUI3|SA145_SCHPO Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=sap145 PE=1 SV=1
          Length = 601

 Score =  232 bits (592), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 113/198 (57%), Positives = 139/198 (70%), Gaps = 1/198 (0%)

Query: 14  MRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIGK 73
           M +A++K    + DVVE WD ++ DP  L  LKAY NTVPVPRHW QKR +L G+RGI +
Sbjct: 187 MTVAQLKMLSEKADVVEWWDVSSLDPLFLTHLKAYPNTVPVPRHWNQKRDYLSGQRGIER 246

Query: 74  QPFHLPDFIAATGIEKVRQACNEKEDSKKLKQKQSERMQPRMKKMDIDYPALYDAFFKYQ 133
           Q F LP +I ATGI ++R A +E E    L+QK  ER+QP+M K+DIDY  L+DAFF+YQ
Sbjct: 247 QLFELPSYIRATGIVQMRNAVHENEADMPLRQKMRERVQPKMGKLDIDYQKLHDAFFRYQ 306

Query: 134 TKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPP 193
           TKP LT  G+ Y+EGKE E   + E +P  +S ELREALGI   A PP+L  MQRYG PP
Sbjct: 307 TKPVLTGFGECYFEGKELEA-DVKEKRPGDISEELREALGIAPGAPPPWLFAMQRYGPPP 365

Query: 194 SYPNLKIPGFNAPIPQEA 211
           SYP+LKIPG N PIP  A
Sbjct: 366 SYPDLKIPGVNCPIPTGA 383


>sp|Q02554|CUS1_YEAST Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=CUS1 PE=1 SV=1
          Length = 436

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 123/217 (56%), Gaps = 12/217 (5%)

Query: 3   LSKKRKKHGRRMRIAEVKRYCSRPDVVEVWDATAADPKLLVFLKAYRNTVPVPRHWCQKR 62
           LS ++++   +  ++++K     P ++E +D  A  P LL  +K  +N +PVP HW  K+
Sbjct: 121 LSARKRRKTEKPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVPSHWQSKK 180

Query: 63  KFLQGKRGIGKQPFHLPDFIAATGIEKVR----QACNEKEDSKKLKQKQSERMQPRMKKM 118
           ++L G+  +GK+PF LPD I  T IE++R    Q+  + +D K LK+    R+QP+M  +
Sbjct: 181 EYLSGRSLLGKRPFELPDIIKKTNIEQMRSTLPQSGLDGQDEKSLKEASRARVQPKMGAL 240

Query: 119 DIDYPALYDAFFKYQTKPK---LTTHGDLYYEGK----EFEVKQLMEMK-PCTLSYELRE 170
           D+DY  L+D FFK     K   L   GD+YYE +    E   K++++ K P  +S ELR 
Sbjct: 241 DLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHKRPGRISQELRA 300

Query: 171 ALGIPDVASPPYLRNMQRYGAPPSYPNLKIPGFNAPI 207
            + +P+   PP+   M+  G P  YP+LKI G N  I
Sbjct: 301 IMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLNWDI 337


>sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2
          Length = 895

 Score = 42.4 bits (98), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 260 LYQVLEEKEERIAPRTLLVTTHTVKRVDLLK----GQQTDRVDAILQPEELEVMDNVLPA 315
           L+ VL EK        ++ +TH      ++       +   V+  L PEELE+    +  
Sbjct: 783 LFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQ 842

Query: 316 KYEEAKQEEKLHSQRQDFSGMVAENEKKRKRQM-----QEKEGKSKKNLKF 361
           KYEE  +E++   +++DFS MVAE+  K+K++      Q+  G SKK  +F
Sbjct: 843 KYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEF 893


>sp|Q6NZY4|ZCHC8_HUMAN Zinc finger CCHC domain-containing protein 8 OS=Homo sapiens
           GN=ZCCHC8 PE=1 SV=2
          Length = 707

 Score = 38.9 bits (89), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 146 YEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSY 195
           Y  +E E ++    KP  +S EL++ALG+ D + PP++  M++ G PP +
Sbjct: 274 YHAEEVE-ERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 322


>sp|Q5R789|ZCHC8_PONAB Zinc finger CCHC domain-containing protein 8 OS=Pongo abelii
           GN=ZCCHC8 PE=2 SV=1
          Length = 704

 Score = 38.9 bits (89), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 146 YEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSY 195
           Y  +E E ++    KP  +S EL++ALG+ D + PP++  M++ G PP +
Sbjct: 272 YHAEEVE-ERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 320


>sp|Q6DD45|ZCHC8_XENLA Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis
           GN=zcchc8 PE=2 SV=1
          Length = 743

 Score = 38.1 bits (87), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 146 YEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSY 195
           Y  +E E ++  + KP  +S EL+EALGI D   PP++  M+  G PP +
Sbjct: 259 YHAEEVE-ERFGKYKPGVISEELQEALGIMDKNLPPFIYRMRELGYPPGW 307


>sp|Q9CYA6|ZCHC8_MOUSE Zinc finger CCHC domain-containing protein 8 OS=Mus musculus
           GN=Zcchc8 PE=2 SV=3
          Length = 709

 Score = 38.1 bits (87), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 146 YEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSY 195
           Y  +E E ++    KP  +S EL++ALG+ D + PP++  M++ G PP +
Sbjct: 277 YHAEEVE-ERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGW 325


>sp|Q5F3D1|ZCHC8_CHICK Zinc finger CCHC domain-containing protein 8 OS=Gallus gallus
           GN=ZCCHC8 PE=2 SV=1
          Length = 613

 Score = 36.6 bits (83), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 146 YEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPSY 195
           Y  +E E ++  + KP  +S EL++ALG+   + PP++  M++ G PP +
Sbjct: 173 YHAEEVE-ERFGKFKPGVISGELQDALGVTAKSLPPFIYRMRQLGYPPGW 221


>sp|Q8BXA1|GOLI4_MOUSE Golgi integral membrane protein 4 OS=Mus musculus GN=Golim4 PE=1
           SV=1
          Length = 655

 Score = 34.7 bits (78), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 170 EALGIPDVASPPYLRNMQRY----GAPPSYPNLKIPGFNAPIPQ-EADKPHVVDTEPVDK 224
           E  GIP+     Y R+ QR     G P +   L+ PG     P+ EAD+  V D  P D 
Sbjct: 457 EDQGIPEEEGGAYDRDNQRQDEAEGDPGNRQELREPGHQEGDPEVEADRAAVEDINPADD 516

Query: 225 TRHWGDLEEAEDEIEE 240
             + G     EDE EE
Sbjct: 517 PNNQG-----EDEFEE 527


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.133    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,652,728
Number of Sequences: 539616
Number of extensions: 6502863
Number of successful extensions: 31847
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 575
Number of HSP's that attempted gapping in prelim test: 28841
Number of HSP's gapped (non-prelim): 2676
length of query: 361
length of database: 191,569,459
effective HSP length: 119
effective length of query: 242
effective length of database: 127,355,155
effective search space: 30819947510
effective search space used: 30819947510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)