Query 038777
Match_columns 361
No_of_seqs 184 out of 231
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 04:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1eov_A ASPRS, aspartyl-tRNA sy 49.0 3 0.0001 41.9 -0.5 75 119-194 375-452 (487)
2 3a5y_A GENX, putative lysyl-tR 33.4 30 0.001 33.2 3.7 86 109-194 218-314 (345)
3 1wyd_A Hypothetical aspartyl-t 31.5 4.3 0.00015 40.2 -2.6 76 117-194 317-394 (429)
4 1n9w_A Aspartyl-tRNA synthetas 25.0 6.7 0.00023 38.7 -2.6 75 117-194 312-387 (422)
5 1l0w_A Aspartyl-tRNA synthetas 24.7 14 0.00049 38.0 -0.3 68 126-194 442-522 (580)
6 2l66_A SSO7C4, transcriptional 23.9 42 0.0014 23.7 2.1 16 163-178 15-30 (53)
7 1yfb_A Transition state regula 23.5 39 0.0013 24.9 2.0 17 163-179 25-41 (59)
8 2e8g_A Hypothetical protein PH 23.3 15 0.00052 34.4 -0.3 29 32-61 2-36 (241)
9 1c0a_A Aspartyl tRNA synthetas 23.0 3.9 0.00013 42.1 -4.8 68 126-194 448-528 (585)
10 1x54_A Asparaginyl-tRNA synthe 21.6 6 0.0002 39.1 -3.6 75 118-194 321-399 (434)
No 1
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=49.04 E-value=3 Score=41.89 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=52.3
Q ss_pred CCChHHHHHHHhc--cCCCCCCCCCCcccccchhhhhhhhccCCCCcccHHHHHHhCCCCC-CCchHHHHHhhcCCCCC
Q 038777 119 DIDYPALYDAFFK--YQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDV-ASPPYLRNMQRYGAPPS 194 (361)
Q Consensus 119 DIDYqkLhDAFFk--~qtKP~Lt~~GDlYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~-~pPPWl~~Mqr~G~PPs 194 (361)
-.||-.-|.+||. ....|.++.-=|||..|.|.-....+...|-.+-..+ +++|+++. ..--|+....+||.||.
T Consensus 375 v~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~-~~~g~~~~~~~~~~yl~al~yG~PPh 452 (487)
T 1eov_A 375 LDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERM-KAHGLSPEDPGLKDYCDGFSYGCPPH 452 (487)
T ss_dssp EECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHH-HHTTCCTTSTTTHHHHHHHTTCCCCE
T ss_pred EECCccccChhhcCcCCCCCCeEEEEEEEeCCEEEEeeEEecCCHHHHHHHH-HHcCCChhhhhHHHHHHHHhcCCCCC
Confidence 3489998999873 2346888888899999987633222334444444444 45798876 24479999999999984
No 2
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=33.43 E-value=30 Score=33.24 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=55.8
Q ss_pred hhcCCCCCc----cCCChHHHHHHHhccC-CCCCCCCCCcccccchhhhhhhhccCCCCcc------cHHHHHHhCCCCC
Q 038777 109 ERMQPRMKK----MDIDYPALYDAFFKYQ-TKPKLTTHGDLYYEGKEFEVKQLMEMKPCTL------SYELREALGIPDV 177 (361)
Q Consensus 109 ervqPKmGk----lDIDYqkLhDAFFk~q-tKP~Lt~~GDlYYEGKE~e~~~~~~~kPG~L------S~eLR~ALGm~~~ 177 (361)
+.|.|++|. .-+||-..-.+|-+.- ..|.++.-=|||..|.|.-.....-..|-.+ -.+.++++|+.+.
T Consensus 218 ~~ve~~lg~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~ 297 (345)
T 3a5y_A 218 FGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQH 297 (345)
T ss_dssp HHTGGGSSSSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHcCCCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChh
Confidence 567788873 4567877666765433 3566776779999998652110001111111 1456677899988
Q ss_pred CCchHHHHHhhcCCCCC
Q 038777 178 ASPPYLRNMQRYGAPPS 194 (361)
Q Consensus 178 ~pPPWl~~Mqr~G~PPs 194 (361)
...-|+....+||.||.
T Consensus 298 ~~d~~yl~al~yG~PPh 314 (345)
T 3a5y_A 298 PIDQNLIEALKVGMPDC 314 (345)
T ss_dssp CCCHHHHHHHHHCCCSE
T ss_pred hHHHHHHHHHhcCCCCC
Confidence 88789999999999984
No 3
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=31.51 E-value=4.3 Score=40.17 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=51.3
Q ss_pred ccCCChHHHHHHHhccC--CCCCCCCCCcccccchhhhhhhhccCCCCcccHHHHHHhCCCCCCCchHHHHHhhcCCCCC
Q 038777 117 KMDIDYPALYDAFFKYQ--TKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPS 194 (361)
Q Consensus 117 klDIDYqkLhDAFFk~q--tKP~Lt~~GDlYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~Mqr~G~PPs 194 (361)
.+-+||-..+.+|+.-. ..|.++.-=|+|..|.|.-....+...|-.+-..++ ++|+++.. --|+....+||.||.
T Consensus 317 ~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~Ei~~G~~r~~d~~~q~~rf~-~~g~~~~~-~~~yl~al~yG~PP~ 394 (429)
T 1wyd_A 317 YFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALK-KKGLKPES-FEFFLKWFDYGMPPH 394 (429)
T ss_dssp EEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCGGG-GHHHHGGGGSCCCCE
T ss_pred EEEecCChhhChhhCCcCCCCCCeEEEEEEEECCEEEEeCeeeeCCHHHHHHHHH-HcCCChHH-HHHHHHHHhcCCCCc
Confidence 45678888888885432 467788888999999987432223344444444443 46887654 489999999999974
No 4
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=24.95 E-value=6.7 Score=38.71 Aligned_cols=75 Identities=24% Similarity=0.291 Sum_probs=49.2
Q ss_pred ccCCChHHHHHHHhccCCCC-CCCCCCcccccchhhhhhhhccCCCCcccHHHHHHhCCCCCCCchHHHHHhhcCCCCC
Q 038777 117 KMDIDYPALYDAFFKYQTKP-KLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPS 194 (361)
Q Consensus 117 klDIDYqkLhDAFFk~qtKP-~Lt~~GDlYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~Mqr~G~PPs 194 (361)
..-+||-..+.+|+.... + .++.-=|||..|.|.-....+...|-.+-..++ ++|+++.. --|+....+||.||.
T Consensus 312 ~fv~d~P~~~~pf~~~~~-~d~~~~~fDL~~~G~Ei~~G~~r~~d~~~q~~rf~-~~g~~~~~-~~~yl~a~~yG~PPh 387 (422)
T 1n9w_A 312 LFVTRYPRSVRPFYTYPE-EDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLK-AKGMDPEA-FHGYLEVFKYGMPPH 387 (422)
T ss_dssp EEEECCBGGGSCTTBCBC-TTSBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCGGG-GHHHHGGGGBCCCSE
T ss_pred EEEECCChhhCcCcCCCC-CCCEEEEEEEEECCEEEEeCEeecCCHHHHHHHHH-HcCCCHHH-HHHHHHHHhcCCCCc
Confidence 345677777777765432 2 567777999999976432223444444444444 45887754 499999999999984
No 5
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=24.65 E-value=14 Score=37.96 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=44.5
Q ss_pred HHHHhccCC--------CC-CC-CCCCcccccchhhhhhhhccCCCCcccHHHHHHhCCCCCCCch---HHHHHhhcCCC
Q 038777 126 YDAFFKYQT--------KP-KL-TTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPP---YLRNMQRYGAP 192 (361)
Q Consensus 126 hDAFFk~qt--------KP-~L-t~~GDlYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~~pPP---Wl~~Mqr~G~P 192 (361)
|..|..-.. .| .+ +..=|+|..|.|.-....+...|-.+-..++ ++|+++...-. |+....+||.|
T Consensus 442 ~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~-~~g~~~ee~~~~~~~~L~al~yG~P 520 (580)
T 1l0w_A 442 HHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFR-LLGIGEEEQREKFGFFLEALEYGAP 520 (580)
T ss_dssp SCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HHTCCTTTHHHHTHHHHHHTTBTCC
T ss_pred cCCccCCCchhhhhhcCCccceeeeEEEEEeCCEEEEeCeeecCCHHHHHHHHH-HcCCChhHHHhHHHHHHHHHhcCCC
Confidence 667654332 46 35 6777999999987433233445544444444 57888775444 99999999999
Q ss_pred CC
Q 038777 193 PS 194 (361)
Q Consensus 193 Ps 194 (361)
|.
T Consensus 521 Ph 522 (580)
T 1l0w_A 521 PH 522 (580)
T ss_dssp CE
T ss_pred CC
Confidence 84
No 6
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=23.93 E-value=42 Score=23.69 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=14.2
Q ss_pred cccHHHHHHhCCCCCC
Q 038777 163 TLSYELREALGIPDVA 178 (361)
Q Consensus 163 ~LS~eLR~ALGm~~~~ 178 (361)
+|..++|++|||.+|+
T Consensus 15 ~IPk~ir~~lgi~~Gd 30 (53)
T 2l66_A 15 TIPAKVRQKFQIKEGD 30 (53)
T ss_dssp CCCHHHHHHSCCCTTC
T ss_pred EeCHHHHHHcCcCCCC
Confidence 5789999999999885
No 7
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=23.50 E-value=39 Score=24.92 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=14.7
Q ss_pred cccHHHHHHhCCCCCCC
Q 038777 163 TLSYELREALGIPDVAS 179 (361)
Q Consensus 163 ~LS~eLR~ALGm~~~~p 179 (361)
+|..++|++|||.+|+.
T Consensus 25 tIPkeiR~~Lgi~~Gd~ 41 (59)
T 1yfb_A 25 VIPIELRRTLGIAEKDA 41 (59)
T ss_dssp ECCHHHHHHTTCCTTCE
T ss_pred EeCHHHHHHcCCCCCCE
Confidence 57899999999999863
No 8
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=23.31 E-value=15 Score=34.38 Aligned_cols=29 Identities=38% Similarity=0.620 Sum_probs=22.0
Q ss_pred ecCCCCChHHHHHHhhc---CCCc---cCCccccch
Q 038777 32 WDATAADPKLLVFLKAY---RNTV---PVPRHWCQK 61 (361)
Q Consensus 32 ~D~tA~DP~lLv~lKs~---rNtV---PVP~HW~~K 61 (361)
|| ||.||+|||.-|+. .|+| -++.||.-|
T Consensus 2 ~d-t~~d~r~~~ae~~~~~~~~~~~~~~~~~~~~kk 36 (241)
T 2e8g_A 2 WD-TSKDYRLLVAEKSVELFIRTIEGAKFRGQWDKK 36 (241)
T ss_dssp CC-GGGCHHHHHHHHHHHHHHHHHHTSCCCTTSCHH
T ss_pred CC-cccchHHHHHHHHHHHHHHHHhccCccccccHH
Confidence 44 79999999987763 4444 889999854
No 9
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=23.01 E-value=3.9 Score=42.07 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=43.7
Q ss_pred HHHHhccCC--------CC-CC-CCCCcccccchhhhhhhhccCCCCcccHHHHHHhCCCCCCCch---HHHHHhhcCCC
Q 038777 126 YDAFFKYQT--------KP-KL-TTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPP---YLRNMQRYGAP 192 (361)
Q Consensus 126 hDAFFk~qt--------KP-~L-t~~GDlYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~~pPP---Wl~~Mqr~G~P 192 (361)
|.+|..-.. .| .+ +..=|||..|.|.-....+...|-.+-..++ ++||++...-. |+....+||.|
T Consensus 448 ~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~-~~g~~~ee~~~~~~~yL~al~yG~P 526 (585)
T 1c0a_A 448 HHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFG-ILGINEEEQREKFGFLLDALKYGTP 526 (585)
T ss_dssp SCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTTTCC
T ss_pred cCCccCCCchhhhhhccCCcceeeeEEEEEECCEEEeeeeeecCCHHHHHHHHH-HcCCChHHHHhhHHHHHHHHhcCCC
Confidence 777755432 46 35 7788999999986433233444544444444 56776543222 99999999999
Q ss_pred CC
Q 038777 193 PS 194 (361)
Q Consensus 193 Ps 194 (361)
|.
T Consensus 527 Ph 528 (585)
T 1c0a_A 527 PH 528 (585)
T ss_dssp CE
T ss_pred Cc
Confidence 84
No 10
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=21.64 E-value=6 Score=39.13 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=45.8
Q ss_pred cCCChHHHHHHHhcc--CCCCCCCCCCccccc-ch-hhhhhhhccCCCCcccHHHHHHhCCCCCCCchHHHHHhhcCCCC
Q 038777 118 MDIDYPALYDAFFKY--QTKPKLTTHGDLYYE-GK-EFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPP 193 (361)
Q Consensus 118 lDIDYqkLhDAFFk~--qtKP~Lt~~GDlYYE-GK-E~e~~~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~Mqr~G~PP 193 (361)
+-+||-..+.+|+.- ...|.++.-=|+|.. |. |.-....+...|-.+-..++ ++|+++.. --|+..+.+||.||
T Consensus 321 fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~-~~g~~~~~-~~~yl~al~yG~PP 398 (434)
T 1x54_A 321 FVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRIL-EEGMDPKD-YEWYLDLRRYGSVP 398 (434)
T ss_dssp EEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCHHHHHHHHH-HTTCCGGG-GHHHHHTTTSSCCC
T ss_pred EEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCHHHHHHHHH-HcCCChHH-HHHHHHHHhcCCCC
Confidence 344565555565432 235566666789998 87 76332122344444434443 45887654 48999999999997
Q ss_pred C
Q 038777 194 S 194 (361)
Q Consensus 194 s 194 (361)
.
T Consensus 399 ~ 399 (434)
T 1x54_A 399 H 399 (434)
T ss_dssp E
T ss_pred c
Confidence 4
Done!