Query 038777
Match_columns 361
No_of_seqs 184 out of 231
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 04:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038777.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038777hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n9wa2 d.104.1.1 (A:111-414) 34.8 1.6 0.00012 38.0 -2.6 75 118-194 203-277 (304)
2 d1l0wa3 d.104.1.1 (A:105-294,A 26.4 6 0.00043 35.4 -0.3 52 142-194 244-298 (356)
3 d1yfba1 b.129.1.3 (A:3-53) Tra 21.8 18 0.0013 25.1 1.6 17 163-179 17-33 (51)
4 d1p90a_ c.55.5.2 (A:) NafY cor 19.6 21 0.0015 26.8 1.7 10 176-185 112-121 (123)
5 d1k61a_ a.4.1.1 (A:) mat alpha 16.5 40 0.0029 22.8 2.5 43 124-188 12-54 (60)
6 d1uwda_ d.52.8.2 (A:) Hypothet 14.2 31 0.0022 25.9 1.5 16 159-174 87-102 (102)
7 d1b8aa2 d.104.1.1 (A:104-438) 13.1 13 0.00093 32.3 -1.3 71 119-194 225-300 (335)
8 d1eova2 d.104.1.1 (A:205-557) 11.7 29 0.0021 30.3 0.6 73 121-194 243-318 (353)
9 d2hmfa2 d.58.18.10 (A:404-470) 11.6 37 0.0027 23.4 1.1 9 123-131 58-66 (67)
10 d1nnha_ d.104.1.1 (A:) Hypothe 11.0 19 0.0014 31.3 -0.8 49 144-194 208-257 (293)
No 1
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=34.85 E-value=1.6 Score=37.99 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=45.8
Q ss_pred cCCChHHHHHHHhccCCCCCCCCCCcccccchhhhhhhhccCCCCcccHHHHHHhCCCCCCCchHHHHHhhcCCCCC
Q 038777 118 MDIDYPALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYGAPPS 194 (361)
Q Consensus 118 lDIDYqkLhDAFFk~qtKP~Lt~~GDlYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~Mqr~G~PPs 194 (361)
+-.||-+-..+|++.-..+..+.-=|+|+.|.|.-........|=.+...++ +.|+.+.. --|++++.++|+||.
T Consensus 203 fi~~~P~~~~p~~~~~~~~~~a~rfel~~~G~El~nG~~e~~d~~~l~~r~~-~~~~~~e~-~~~yl~al~~G~PP~ 277 (304)
T d1n9wa2 203 FVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLK-AKGMDPEA-FHGYLEVFKYGMPPH 277 (304)
T ss_dssp EEECCBGGGSCTTBCBCTTSBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCGGG-GHHHHGGGGBCCCSE
T ss_pred EEeCChhhhCchhhcccccceeehhccccCcEEEeccccccCCHHHHHHHHH-HcCCCHHH-HHHHHHHHhcCCCCC
Confidence 4457777667777655555555445999999987221111223333333343 34665433 369999999999995
No 2
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=26.41 E-value=6 Score=35.42 Aligned_cols=52 Identities=25% Similarity=0.329 Sum_probs=31.7
Q ss_pred CcccccchhhhhhhhccCCCCcccHHHHHHhCCCCCCC---chHHHHHhhcCCCCC
Q 038777 142 GDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVAS---PPYLRNMQRYGAPPS 194 (361)
Q Consensus 142 GDlYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~~p---PPWl~~Mqr~G~PPs 194 (361)
=|+|+.|.|.-........|-.+-..+ ++.|+..... --|+..+.++|.||.
T Consensus 244 FdL~~~G~ElanG~~r~~d~~~~~~r~-~~~~~~~~~~~~~~~~yl~a~~~G~PP~ 298 (356)
T d1l0wa3 244 YDLVLNGVEVGGGSIRIHDPRLQARVF-RLLGIGEEEQREKFGFFLEALEYGAPPH 298 (356)
T ss_dssp EEEEETTEEEEEEEEBCCCHHHHHHHH-HHHTCCTTTHHHHTHHHHHHTTBTCCCE
T ss_pred eecccCCEEeeccEEEeCcHHHHHHHH-HHHcCCchhhHHHHHHHHHHhhCCCCCc
Confidence 489999987632212223333333333 3567776542 359999999999985
No 3
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]}
Probab=21.84 E-value=18 Score=25.07 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=14.8
Q ss_pred cccHHHHHHhCCCCCCC
Q 038777 163 TLSYELREALGIPDVAS 179 (361)
Q Consensus 163 ~LS~eLR~ALGm~~~~p 179 (361)
+|-.|||.+|||.++++
T Consensus 17 ViPkElR~~L~I~~~d~ 33 (51)
T d1yfba1 17 VIPIELRRTLGIAEKDA 33 (51)
T ss_dssp ECCHHHHHHTTCCTTCE
T ss_pred EccHHHHHhcCCCCCCc
Confidence 57789999999999875
No 4
>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii [TaxId: 354]}
Probab=19.59 E-value=21 Score=26.82 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=8.3
Q ss_pred CCCCchHHHH
Q 038777 176 DVASPPYLRN 185 (361)
Q Consensus 176 ~~~pPPWl~~ 185 (361)
.+.|||||-+
T Consensus 112 ~~~~p~~l~k 121 (123)
T d1p90a_ 112 AGSPPPWLAK 121 (123)
T ss_dssp HSCCCHHHHH
T ss_pred CCCCChHHhh
Confidence 5789999975
No 5
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.52 E-value=40 Score=22.76 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=32.6
Q ss_pred HHHHHHhccCCCCCCCCCCcccccchhhhhhhhccCCCCcccHHHHHHhCCCCCCCchHHHHHhh
Q 038777 124 ALYDAFFKYQTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQR 188 (361)
Q Consensus 124 kLhDAFFk~qtKP~Lt~~GDlYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~Mqr 188 (361)
.|.+.|..++..|..| .+.+ .+|-.++||++...=-|+.|-++
T Consensus 12 ~L~~~f~~~~~~pyPs-----------~~e~-----------~~La~~~gL~~~qV~~WF~N~R~ 54 (60)
T d1k61a_ 12 ILESWFAKNIENPYLD-----------TKGL-----------ENLMKNTSLSRIQIKNWVSNRRR 54 (60)
T ss_dssp HHHHHHHHTTTSCCCC-----------HHHH-----------HHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcC-----------HHHH-----------HHHHHHHCcCHHHHhHHhHhhcc
Confidence 4777888777767654 2233 78899999999999999998764
No 6
>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}
Probab=14.21 E-value=31 Score=25.88 Aligned_cols=16 Identities=44% Similarity=0.679 Sum_probs=13.9
Q ss_pred CCCCcccHHHHHHhCC
Q 038777 159 MKPCTLSYELREALGI 174 (361)
Q Consensus 159 ~kPG~LS~eLR~ALGm 174 (361)
-.|..+|++.|++|||
T Consensus 87 W~~~~~s~~~r~~lG~ 102 (102)
T d1uwda_ 87 WTPERMSPELREKFGV 102 (102)
T ss_dssp CCGGGSCHHHHHHHTC
T ss_pred CChHHCCHHHHHHcCC
Confidence 4678899999999997
No 7
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=13.06 E-value=13 Score=32.30 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=39.7
Q ss_pred CCChHHHHHHHhccC--CCCCCCCCCcccccchhhhhhhhccCCCCcccHHHHHH---hCCCCCCCchHHHHHhhcCCCC
Q 038777 119 DIDYPALYDAFFKYQ--TKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREA---LGIPDVASPPYLRNMQRYGAPP 193 (361)
Q Consensus 119 DIDYqkLhDAFFk~q--tKP~Lt~~GDlYYEGKE~e~~~~~~~kPG~LS~eLR~A---LGm~~~~pPPWl~~Mqr~G~PP 193 (361)
-+||-.-..+|.... ..|.++.-=|+|..|.|.-........| ++|++. .|+++.. --|++++.++|+||
T Consensus 225 i~~~P~~~~pl~~~~~~~~~~~a~rfel~~~G~El~nG~~e~~~~----~~~~~r~~~~~~~~e~-~e~yl~al~~G~Pp 299 (335)
T d1b8aa2 225 LYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRH----DILVEQIKEKGLNPES-FEFYLKAFRYGMPP 299 (335)
T ss_dssp EESCBGGGSCTTBCEETTEEEEESEEEEEETTEEEEEEEEBCCCH----HHHHHHHHHTTCCGGG-GHHHHHTTSBCCCC
T ss_pred eecChHHhhhccccccCCCcHHHHhhccccCceeeecccchhcCH----HHHHHHHHHcCCCHHH-HHHHHHHhhcCCCC
Confidence 345554444554422 3444444448899998863221112222 333333 4766544 37999999999999
Q ss_pred C
Q 038777 194 S 194 (361)
Q Consensus 194 s 194 (361)
+
T Consensus 300 ~ 300 (335)
T d1b8aa2 300 H 300 (335)
T ss_dssp E
T ss_pred C
Confidence 6
No 8
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.66 E-value=29 Score=30.29 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=42.6
Q ss_pred ChHHHHHHHhcc--CCCCCCCCCCcccccchhhhhhhhccCCCCcccHHHHHHhCCCCCC-CchHHHHHhhcCCCCC
Q 038777 121 DYPALYDAFFKY--QTKPKLTTHGDLYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVA-SPPYLRNMQRYGAPPS 194 (361)
Q Consensus 121 DYqkLhDAFFk~--qtKP~Lt~~GDlYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~~-pPPWl~~Mqr~G~PPs 194 (361)
||-.-..+|+.. ...|.++..=|+|+.|.|.-........|=.+-..+ ++.|+.+.. .--|+..+.++|+||.
T Consensus 243 ~~P~~~~p~~~~~~~~~~~~a~rfeL~~~G~El~nG~~e~~d~~~~~~r~-~~~~~~~~~~~~~~yl~al~~G~PP~ 318 (353)
T d1eova2 243 KFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERM-KAHGLSPEDPGLKDYCDGFSYGCPPH 318 (353)
T ss_dssp CCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHH-HHTTCCTTSTTTHHHHHHHTTCCCCE
T ss_pred CCcHHHhhhhhCCChhhhhhhhceeeeeeceEEcceecccCCHHHHHHHH-HHcCCChhhhHHHHHHHHhHcCCCCC
Confidence 465544556543 245667777789999988732211112221222222 345776543 3459999999999994
No 9
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=11.59 E-value=37 Score=23.40 Aligned_cols=9 Identities=22% Similarity=0.445 Sum_probs=7.1
Q ss_pred HHHHHHHhc
Q 038777 123 PALYDAFFK 131 (361)
Q Consensus 123 qkLhDAFFk 131 (361)
+.||++||.
T Consensus 58 ~~Lh~~F~~ 66 (67)
T d2hmfa2 58 RKLHEKFIE 66 (67)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 359999984
No 10
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=11.04 E-value=19 Score=31.27 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=29.3
Q ss_pred ccccchhhhhhhhccCCCCcccHHHHHHhCCCCCCCchHHHHHhhcC-CCCC
Q 038777 144 LYYEGKEFEVKQLMEMKPCTLSYELREALGIPDVASPPYLRNMQRYG-APPS 194 (361)
Q Consensus 144 lYYEGKE~e~~~~~~~kPG~LS~eLR~ALGm~~~~pPPWl~~Mqr~G-~PPs 194 (361)
+|+.|.|.-........|-.+-..++ +.|+++... -|...+.++| +||+
T Consensus 208 l~~~g~Elang~~el~d~~~~~~r~~-~~gl~~e~~-~~yl~a~~~G~mPP~ 257 (293)
T d1nnha_ 208 LPYGYGEVASGGEREWEYEKIVAKIR-KAGLNEDSF-RPYLEIAKAGKLKPS 257 (293)
T ss_dssp ETTTTEEEEEEEEBCCCHHHHHHHHH-HTTCCGGGG-HHHHHHHHTTCCCCE
T ss_pred ecccCcccccccccccCHHHHHHHHH-HcCCCHHHH-HHHHHHHHhCCCCCC
Confidence 55666665322122334444445554 467765443 6899999999 8885
Done!