Query 038778
Match_columns 127
No_of_seqs 115 out of 821
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:37:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 7.6E-52 2.6E-56 301.1 9.6 123 1-127 13-136 (174)
2 1ut7_A No apical meristem prot 100.0 2.2E-51 7.4E-56 298.2 9.8 123 1-127 15-138 (171)
3 1ldd_A APC2WHB, anaphase promo 68.9 1.2 4E-05 27.4 0.3 28 2-30 35-63 (74)
4 3nr5_A MAF1, repressor of RNA 40.4 11 0.00037 26.5 1.4 14 34-48 119-132 (164)
5 2ehh_A DHDPS, dihydrodipicolin 38.8 9.4 0.00032 28.6 0.9 18 3-21 102-119 (294)
6 3cpr_A Dihydrodipicolinate syn 38.6 8.7 0.0003 29.0 0.7 18 3-21 118-135 (304)
7 2ojp_A DHDPS, dihydrodipicolin 38.3 9.7 0.00033 28.5 0.9 18 3-21 103-120 (292)
8 3dz1_A Dihydrodipicolinate syn 38.2 9.9 0.00034 28.8 1.0 17 3-21 109-125 (313)
9 3dct_B Nuclear receptor coacti 38.1 15 0.00053 16.7 1.2 12 10-21 2-13 (21)
10 1f6k_A N-acetylneuraminate lya 38.0 9.9 0.00034 28.5 0.9 18 3-21 106-123 (293)
11 3fkr_A L-2-keto-3-deoxyarabona 37.3 13 0.00044 28.2 1.5 19 3-21 110-130 (309)
12 2yxg_A DHDPS, dihydrodipicolin 37.1 10 0.00036 28.3 0.9 18 3-21 102-119 (289)
13 2rfg_A Dihydrodipicolinate syn 36.6 12 0.0004 28.2 1.1 18 3-21 102-119 (297)
14 2wkj_A N-acetylneuraminate lya 36.5 11 0.00037 28.5 0.9 18 3-21 113-130 (303)
15 2nuw_A 2-keto-3-deoxygluconate 36.3 13 0.00043 27.8 1.3 18 3-21 98-116 (288)
16 2vc6_A MOSA, dihydrodipicolina 36.1 11 0.00038 28.2 0.9 18 3-21 102-119 (292)
17 3b4u_A Dihydrodipicolinate syn 35.2 14 0.00046 27.8 1.3 18 3-21 105-123 (294)
18 1o5k_A DHDPS, dihydrodipicolin 35.1 12 0.0004 28.3 0.9 18 3-21 114-131 (306)
19 3d0c_A Dihydrodipicolinate syn 34.2 14 0.00049 28.0 1.3 18 3-21 113-130 (314)
20 3daq_A DHDPS, dihydrodipicolin 34.1 11 0.00039 28.2 0.7 18 3-21 104-121 (292)
21 2v9d_A YAGE; dihydrodipicolini 34.1 12 0.00043 28.8 0.9 18 3-21 133-150 (343)
22 3si9_A DHDPS, dihydrodipicolin 33.9 12 0.00043 28.4 0.9 18 3-21 124-141 (315)
23 1xky_A Dihydrodipicolinate syn 33.7 13 0.00043 28.1 0.9 18 3-21 114-131 (301)
24 2r91_A 2-keto-3-deoxy-(6-phosp 33.5 15 0.0005 27.4 1.2 18 3-21 97-115 (286)
25 3e96_A Dihydrodipicolinate syn 32.9 15 0.00053 27.8 1.3 18 3-21 113-130 (316)
26 3h5d_A DHDPS, dihydrodipicolin 32.9 13 0.00046 28.1 0.9 18 3-21 110-127 (311)
27 3m5v_A DHDPS, dihydrodipicolin 32.8 13 0.00046 27.9 0.9 18 3-21 110-127 (301)
28 1w3i_A EDA, 2-keto-3-deoxy glu 32.8 14 0.00048 27.6 1.0 18 3-21 98-116 (293)
29 3a5f_A Dihydrodipicolinate syn 31.8 10 0.00036 28.3 0.1 17 3-20 103-119 (291)
30 3flu_A DHDPS, dihydrodipicolin 31.6 13 0.00045 27.9 0.7 18 3-21 109-126 (297)
31 3tak_A DHDPS, dihydrodipicolin 31.6 13 0.00045 27.7 0.7 18 3-21 103-120 (291)
32 2r8w_A AGR_C_1641P; APC7498, d 31.6 17 0.00057 27.9 1.3 18 3-21 136-153 (332)
33 3na8_A Putative dihydrodipicol 31.5 17 0.00058 27.6 1.3 18 3-21 126-143 (315)
34 4dpp_A DHDPS 2, dihydrodipicol 31.4 13 0.00046 29.0 0.7 18 3-21 161-178 (360)
35 3l21_A DHDPS, dihydrodipicolin 31.0 15 0.00051 27.7 0.9 18 3-21 117-134 (304)
36 4dox_A Coat protein; all helix 30.9 21 0.00071 26.3 1.6 22 4-25 156-177 (226)
37 3qze_A DHDPS, dihydrodipicolin 30.0 16 0.00054 27.7 0.9 18 3-21 125-142 (314)
38 2pcq_A Putative dihydrodipicol 26.7 14 0.00047 27.6 0.0 18 3-21 95-113 (283)
39 3pp4_P B-lymphocyte antigen CD 25.3 37 0.0013 16.2 1.4 13 39-51 1-13 (25)
40 1cmb_A Met APO-repressor; DNA- 25.3 66 0.0022 20.3 3.0 39 10-52 50-88 (104)
41 2jv2_A Putative uncharacterize 25.0 32 0.0011 21.1 1.5 26 14-42 27-54 (83)
42 2hmc_A AGR_L_411P, dihydrodipi 24.4 26 0.0009 27.0 1.3 18 3-21 125-143 (344)
43 2kk6_A Proto-oncogene tyrosine 24.0 86 0.0029 19.9 3.6 16 10-25 80-95 (116)
44 1q1v_A DEK protein; winged-hel 23.7 54 0.0018 19.4 2.3 20 10-30 11-30 (70)
45 3g1g_A GAG polyprotein, capsid 22.7 49 0.0017 20.7 2.0 20 10-30 62-81 (87)
46 4ds7_E Spindle POLE BODY compo 20.2 53 0.0018 18.6 1.6 15 13-28 35-49 (55)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7.6e-52 Score=301.10 Aligned_cols=123 Identities=31% Similarity=0.615 Sum_probs=112.0
Q ss_pred CCCCCCceEcCCHHHHHHHHHHHhcCCCCC-ccceeecCCcCCCCCccccccCccCCCCceEEEEeccccccCCCCcccc
Q 038778 1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFS-HHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHR 79 (127)
Q Consensus 1 m~lppG~rF~PtDeELi~~yL~~k~~g~~~-~~~I~~~~dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~r 79 (127)
+.|||||||+|||||||.|||++|+.|.++ .++|+++ |||.+|||+||+... .++++|||||++.+|+++|.|.+|
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~ev-Dvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEEC-CGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CCSCE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeec-ccccCCchhhhhhhc--cCCceEEEEeccccccCCCCCcee
Confidence 479999999999999999999999999999 8899999 999999999999764 357899999999999999999999
Q ss_pred cCCCceeEeeCCCeeeeeCCeeEEEEEEEEeeeeCCCCCCCCcCceeC
Q 038778 80 RTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGWVMH 127 (127)
Q Consensus 80 ~~~~G~Wk~~g~~~~i~~~g~~iG~k~~l~f~y~g~~~~~~kt~W~Mh 127 (127)
++++|+||++|++++|.++|.+||+|++|+| |.|+++++.+|+|+||
T Consensus 90 ~t~~G~WkatG~dk~I~~~g~~vG~KktLvF-y~g~~p~g~kT~WvMh 136 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPRGRTLGIKKALVF-YAGKAPRGVKTDWIMH 136 (174)
T ss_dssp EETTEEEEECSCCEEECCSSSCCEEEEEEEE-EESSTTSCEEEEEEEE
T ss_pred ecCCceEccCCCCcEEeeCCcEEEEEEEEEE-ecCCCCCCCcCCeEEE
Confidence 9999999999999999888899999999999 9999999999999998
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.2e-51 Score=298.22 Aligned_cols=123 Identities=33% Similarity=0.596 Sum_probs=110.3
Q ss_pred CCCCCCceEcCCHHHHHHHHHHHhcCCCCC-ccceeecCCcCCCCCccccccCccCCCCceEEEEeccccccCCCCcccc
Q 038778 1 MESLMGFRFQPSNEQIFCLLEKKRLNPHFS-HHTIKDIDDICSLEPWDLAGASKTESEDRVCYFFCKPYYKYKKSTRAHR 79 (127)
Q Consensus 1 m~lppG~rF~PtDeELi~~yL~~k~~g~~~-~~~I~~~~dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~r 79 (127)
+.|||||||+|||||||.|||++|+.|.++ .++|+++ |||.+|||+||+... .++++|||||++.+++++|.|.+|
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~-Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeec-ccccCChhHhhchhh--cCCccEEEEeccccccCCCCcccc
Confidence 479999999999999999999999999999 8899999 999999999999763 467899999999999999999999
Q ss_pred cCCCceeEeeCCCeeeeeCCeeEEEEEEEEeeeeCCCCCCCCcCceeC
Q 038778 80 RTNAGYWKVTGRGSKIKTRNGLSGTKKILTFKYHGPASKKAKIGWVMH 127 (127)
Q Consensus 80 ~~~~G~Wk~~g~~~~i~~~g~~iG~k~~l~f~y~g~~~~~~kt~W~Mh 127 (127)
++++|+||++|++++|.+++.+||+|++|+| |.|+++++.+|+|+||
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvF-y~g~~p~g~kT~WvMh 138 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTEGQRVGIKKALVF-YIGKAPKGTKTNWIMH 138 (171)
T ss_dssp EETTEEEEEEEEEEEEEETTEEEEEEEEEEE-EESSTTSCEEEEEEEE
T ss_pred cCCCCEEeccCCCceEEecCcEEEEEEEEEE-EcCcCCCCCcCCeEEE
Confidence 9999999999999999988899999999999 9999999999999998
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=68.91 E-value=1.2 Score=27.36 Aligned_cols=28 Identities=4% Similarity=-0.089 Sum_probs=22.9
Q ss_pred CCCCCceEcC-CHHHHHHHHHHHhcCCCCC
Q 038778 2 ESLMGFRFQP-SNEQIFCLLEKKRLNPHFS 30 (127)
Q Consensus 2 ~lppG~rF~P-tDeELi~~yL~~k~~g~~~ 30 (127)
-.|.|+.|.. |++||-. ||..++..+.+
T Consensus 35 f~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 35 TVPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp HSCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred hCCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 3577999998 9999988 89999877654
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=40.37 E-value=11 Score=26.45 Aligned_cols=14 Identities=29% Similarity=0.233 Sum_probs=11.2
Q ss_pred eeecCCcCCCCCccc
Q 038778 34 IKDIDDICSLEPWDL 48 (127)
Q Consensus 34 I~~~~dvy~~~P~~L 48 (127)
+.++ |||+++|..-
T Consensus 119 l~dC-~IYsY~Pd~~ 132 (164)
T 3nr5_A 119 LAEC-DIYSYNPDLD 132 (164)
T ss_dssp GGGC-EEEEECCCGG
T ss_pred ccCC-eEEEEcCCCC
Confidence 5677 9999999843
No 5
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=38.81 E-value=9.4 Score=28.62 Aligned_cols=18 Identities=6% Similarity=0.120 Sum_probs=14.3
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- .|.||+++|+.||-
T Consensus 102 ~~P~-y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVPY-YNKPTQRGLYEHFK 119 (294)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999884
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=38.63 E-value=8.7 Score=29.02 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=14.6
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.+.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 458899999999884
No 7
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=38.29 E-value=9.7 Score=28.52 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=14.2
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- .|.||+++|+.||-
T Consensus 103 ~~P~-y~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 103 VTPY-YNRPSQEGLYQHFK 120 (292)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999883
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=38.15 E-value=9.9 Score=28.82 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=13.4
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- |.||+++|+.||-
T Consensus 109 ~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFR 125 (313)
T ss_dssp CCCT--TCCSHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHH
Confidence 5664 5599999999874
No 9
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=38.05 E-value=15 Score=16.67 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=8.6
Q ss_pred cCCHHHHHHHHH
Q 038778 10 QPSNEQIFCLLE 21 (127)
Q Consensus 10 ~PtDeELi~~yL 21 (127)
.+.|.+|+.+.|
T Consensus 2 e~kdhqllryll 13 (21)
T 3dct_B 2 ESKDHQLLRYLL 13 (26)
T ss_pred chhHHHHHHHHH
Confidence 367899999443
No 10
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=38.03 E-value=9.9 Score=28.49 Aligned_cols=18 Identities=11% Similarity=-0.118 Sum_probs=14.3
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- .|.||+++|+.||-
T Consensus 106 ~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999884
No 11
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=37.34 E-value=13 Score=28.17 Aligned_cols=19 Identities=21% Similarity=0.168 Sum_probs=14.5
Q ss_pred CCCCce--EcCCHHHHHHHHH
Q 038778 3 SLMGFR--FQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~r--F~PtDeELi~~yL 21 (127)
+||=|- |.||+++|+.||-
T Consensus 110 ~~Pyy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 110 MPPYHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp CCSCBTTTBCCCHHHHHHHHH
T ss_pred cCCCCccCCCCCHHHHHHHHH
Confidence 566332 7899999999874
No 12
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=37.10 E-value=10 Score=28.30 Aligned_cols=18 Identities=11% Similarity=-0.079 Sum_probs=14.2
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- .|.||+++|+.||-
T Consensus 102 ~~P~-y~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 102 ITPY-YNKPTQEGLRKHFG 119 (289)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4664 47899999999884
No 13
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=36.57 E-value=12 Score=28.22 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=14.3
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- .|.||+++|+.||-
T Consensus 102 ~~P~-y~~~s~~~l~~~f~ 119 (297)
T 2rfg_A 102 VAGY-YNRPSQEGLYQHFK 119 (297)
T ss_dssp CCCT-TTCCCHHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHHH
Confidence 4664 47899999999884
No 14
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=36.47 E-value=11 Score=28.49 Aligned_cols=18 Identities=11% Similarity=-0.254 Sum_probs=14.3
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- .|.||+++|+.||-
T Consensus 113 ~~P~-y~~~s~~~l~~~f~ 130 (303)
T 2wkj_A 113 VTPF-YYPFSFEEHCDHYR 130 (303)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999884
No 15
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=36.35 E-value=13 Score=27.84 Aligned_cols=18 Identities=11% Similarity=-0.086 Sum_probs=14.1
Q ss_pred CCCCceEc-CCHHHHHHHHH
Q 038778 3 SLMGFRFQ-PSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~-PtDeELi~~yL 21 (127)
+||- .|. ||+++|+.||-
T Consensus 98 ~~P~-y~~~~s~~~l~~~f~ 116 (288)
T 2nuw_A 98 HSPY-YFPRLPEKFLAKYYE 116 (288)
T ss_dssp CCCC-SSCSCCHHHHHHHHH
T ss_pred cCCc-CCCCCCHHHHHHHHH
Confidence 4664 477 99999999884
No 16
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=36.11 E-value=11 Score=28.20 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=14.4
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 102 ~~P-~y~~~s~~~l~~~f~ 119 (292)
T 2vc6_A 102 VSP-YYNKPTQEGIYQHFK 119 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 456 458899999999884
No 17
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=35.17 E-value=14 Score=27.76 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=14.0
Q ss_pred CCCCceEc-CCHHHHHHHHH
Q 038778 3 SLMGFRFQ-PSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~-PtDeELi~~yL 21 (127)
+||- .|. ||+++|+.||-
T Consensus 105 ~~P~-y~~~~s~~~l~~~f~ 123 (294)
T 3b4u_A 105 APPS-YFKNVSDDGLFAWFS 123 (294)
T ss_dssp CCCC-SSCSCCHHHHHHHHH
T ss_pred cCCc-CCCCCCHHHHHHHHH
Confidence 4564 477 99999999884
No 18
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=35.14 E-value=12 Score=28.34 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=14.2
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- .|.||+++|+.||-
T Consensus 114 ~~P~-y~~~s~~~l~~~f~ 131 (306)
T 1o5k_A 114 VTPY-YNKPTQEGLYQHYK 131 (306)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4664 48899999999873
No 19
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=34.23 E-value=14 Score=27.97 Aligned_cols=18 Identities=0% Similarity=-0.285 Sum_probs=14.3
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- .|.||+++|+.||-
T Consensus 113 ~~P~-y~~~s~~~l~~~f~ 130 (314)
T 3d0c_A 113 HQPV-HPYITDAGAVEYYR 130 (314)
T ss_dssp CCCC-CSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999884
No 20
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=34.09 E-value=11 Score=28.15 Aligned_cols=18 Identities=6% Similarity=0.023 Sum_probs=14.1
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 104 ~~P-~y~~~~~~~l~~~f~ 121 (292)
T 3daq_A 104 ITP-YYNKTNQRGLVKHFE 121 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 457899999999874
No 21
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=34.08 E-value=12 Score=28.77 Aligned_cols=18 Identities=11% Similarity=0.026 Sum_probs=14.3
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- .|.||+++|+.||-
T Consensus 133 ~~P~-Y~~~s~~~l~~~f~ 150 (343)
T 2v9d_A 133 INPY-YWKVSEANLIRYFE 150 (343)
T ss_dssp ECCS-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4564 48899999999884
No 22
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=33.93 E-value=12 Score=28.38 Aligned_cols=18 Identities=6% Similarity=0.248 Sum_probs=14.2
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 124 ~~P-~y~~~~~~~l~~~f~ 141 (315)
T 3si9_A 124 VTP-YYNRPNQRGLYTHFS 141 (315)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 456 447899999999874
No 23
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=33.69 E-value=13 Score=28.05 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.3
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 114 ~~P-~y~~~s~~~l~~~f~ 131 (301)
T 1xky_A 114 VAP-YYNKPSQEGMYQHFK 131 (301)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 466 458899999999884
No 24
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=33.49 E-value=15 Score=27.42 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=14.2
Q ss_pred CCCCceEc-CCHHHHHHHHH
Q 038778 3 SLMGFRFQ-PSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~-PtDeELi~~yL 21 (127)
+||-| |. ||+++|+.||-
T Consensus 97 ~~P~y-~~~~s~~~l~~~f~ 115 (286)
T 2r91_A 97 LPPYY-FPRLSERQIAKYFR 115 (286)
T ss_dssp CCSCS-STTCCHHHHHHHHH
T ss_pred cCCcC-CCCCCHHHHHHHHH
Confidence 46644 77 99999999884
No 25
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=32.94 E-value=15 Score=27.77 Aligned_cols=18 Identities=0% Similarity=-0.020 Sum_probs=14.4
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||-| +.||+++|+.||-
T Consensus 113 ~~P~y-~~~s~~~l~~~f~ 130 (316)
T 3e96_A 113 HMPIH-PYVTAGGVYAYFR 130 (316)
T ss_dssp CCCCC-SCCCHHHHHHHHH
T ss_pred cCCCC-CCCCHHHHHHHHH
Confidence 46655 8899999999874
No 26
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=32.86 E-value=13 Score=28.13 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=14.0
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 110 ~~P-~y~~~s~~~l~~~f~ 127 (311)
T 3h5d_A 110 IVP-YYNKPSQEGMYQHFK 127 (311)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 455 458899999999874
No 27
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=32.84 E-value=13 Score=27.89 Aligned_cols=18 Identities=6% Similarity=0.220 Sum_probs=13.9
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 110 ~~P-~y~~~s~~~l~~~f~ 127 (301)
T 3m5v_A 110 VAP-YYNKPTQQGLYEHYK 127 (301)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 345 457899999999884
No 28
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=32.82 E-value=14 Score=27.64 Aligned_cols=18 Identities=6% Similarity=0.002 Sum_probs=14.0
Q ss_pred CCCCceEc-CCHHHHHHHHH
Q 038778 3 SLMGFRFQ-PSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~-PtDeELi~~yL 21 (127)
+||- .|. ||+++|+.||-
T Consensus 98 ~~P~-y~~~~s~~~l~~~f~ 116 (293)
T 1w3i_A 98 YAPY-YYPRMSEKHLVKYFK 116 (293)
T ss_dssp ECCC-SCSSCCHHHHHHHHH
T ss_pred cCCC-CCCCCCHHHHHHHHH
Confidence 4564 477 99999999884
No 29
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=31.77 E-value=10 Score=28.32 Aligned_cols=17 Identities=0% Similarity=-0.019 Sum_probs=13.7
Q ss_pred CCCCceEcCCHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLL 20 (127)
Q Consensus 3 lppG~rF~PtDeELi~~y 20 (127)
+|| |.|.||+++|+.||
T Consensus 103 ~~P-~y~~~s~~~l~~~f 119 (291)
T 3a5f_A 103 ITP-YYNKTTQKGLVKHF 119 (291)
T ss_dssp ECC-CSSCCCHHHHHHHC
T ss_pred cCC-CCCCCCHHHHHHHH
Confidence 456 44789999999987
No 30
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=31.63 E-value=13 Score=27.86 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.0
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 109 ~~P-~y~~~~~~~l~~~f~ 126 (297)
T 3flu_A 109 VVP-YYNKPSQEGIYQHFK 126 (297)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 457899999999873
No 31
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=31.62 E-value=13 Score=27.74 Aligned_cols=18 Identities=11% Similarity=0.264 Sum_probs=13.9
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 103 ~~P-~y~~~~~~~l~~~f~ 120 (291)
T 3tak_A 103 VTP-YYNKPTQEGLYQHYK 120 (291)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 455 457899999999873
No 32
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=31.58 E-value=17 Score=27.87 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=14.3
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+||- .+.||+++|+.||-
T Consensus 136 ~~P~-Y~~~s~~~l~~~f~ 153 (332)
T 2r8w_A 136 APVS-YTPLTQEEAYHHFA 153 (332)
T ss_dssp CCCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4664 47899999999884
No 33
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=31.46 E-value=17 Score=27.60 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=14.0
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 126 ~~P-~y~~~s~~~l~~~f~ 143 (315)
T 3na8_A 126 LPI-SYWKLNEAEVFQHYR 143 (315)
T ss_dssp CCC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 447899999999874
No 34
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=31.35 E-value=13 Score=29.03 Aligned_cols=18 Identities=11% Similarity=0.013 Sum_probs=14.8
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.+.||+++|+.||-
T Consensus 161 v~P-yY~k~sq~gl~~hf~ 178 (360)
T 4dpp_A 161 INP-YYGKTSIEGLIAHFQ 178 (360)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 566 668999999999873
No 35
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=30.96 E-value=15 Score=27.72 Aligned_cols=18 Identities=6% Similarity=0.115 Sum_probs=13.9
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 117 ~~P-~y~~~s~~~l~~~f~ 134 (304)
T 3l21_A 117 VTP-YYSKPPQRGLQAHFT 134 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 345 458899999999873
No 36
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=30.88 E-value=21 Score=26.29 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=16.3
Q ss_pred CCCceEcCCHHHHHHHHHHHhc
Q 038778 4 LMGFRFQPSNEQIFCLLEKKRL 25 (127)
Q Consensus 4 ppG~rF~PtDeELi~~yL~~k~ 25 (127)
+-|..+.||++|+|.|=..+++
T Consensus 156 ~~GLiR~PT~~E~iA~~t~K~i 177 (226)
T 4dox_A 156 PSGLTRSPTQEERIANATNKQV 177 (226)
T ss_dssp TTCCSSCCCHHHHHHHHTC---
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
Confidence 3489999999999998766554
No 37
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=30.02 E-value=16 Score=27.74 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=14.0
Q ss_pred CCCCceEcCCHHHHHHHHH
Q 038778 3 SLMGFRFQPSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~PtDeELi~~yL 21 (127)
+|| |.|.||+++|+.||-
T Consensus 125 ~~P-~y~~~s~~~l~~~f~ 142 (314)
T 3qze_A 125 VTP-YYNKPTQEGMYQHFR 142 (314)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 455 447899999999874
No 38
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=26.73 E-value=14 Score=27.55 Aligned_cols=18 Identities=6% Similarity=0.043 Sum_probs=14.2
Q ss_pred CCCCceEcC-CHHHHHHHHH
Q 038778 3 SLMGFRFQP-SNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~P-tDeELi~~yL 21 (127)
+||- .|.| |+++|+.||-
T Consensus 95 ~~P~-y~~~~~~~~l~~~f~ 113 (283)
T 2pcq_A 95 TPPR-YYHGSLGAGLLRYYE 113 (283)
T ss_dssp CCCC-TTGGGTTTHHHHHHH
T ss_pred cCCc-CCCCCCHHHHHHHHH
Confidence 5664 4789 9999999883
No 39
>3pp4_P B-lymphocyte antigen CD20; antibody FAB fragment IG-domain, cyclic peptide, antib antigen, immune system; 1.60A {Homo sapiens} PDB: 3bky_P 2osl_P
Probab=25.33 E-value=37 Score=16.24 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=9.0
Q ss_pred CcCCCCCcccccc
Q 038778 39 DICSLEPWDLAGA 51 (127)
Q Consensus 39 dvy~~~P~~L~~~ 51 (127)
|||.|||.+-.++
T Consensus 1 nIynCE~a~pse~ 13 (25)
T 3pp4_P 1 NIYNCEPANPSEK 13 (26)
T ss_dssp -CCCCSCSSGGGT
T ss_pred CccccccCCcccc
Confidence 6899999665554
No 40
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=25.29 E-value=66 Score=20.31 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHHhcCCCCCccceeecCCcCCCCCccccccC
Q 038778 10 QPSNEQIFCLLEKKRLNPHFSHHTIKDIDDICSLEPWDLAGAS 52 (127)
Q Consensus 10 ~PtDeELi~~yL~~k~~g~~~~~~I~~~~dvy~~~P~~L~~~~ 52 (127)
+-|..||++.-...-..|+|++. +. |+-...|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~---D~-Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD---DA-DLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC---GG-GGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC---ch-hhhhcCCccchHHH
Confidence 45778888876666778999833 33 88888888888653
No 41
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=24.96 E-value=32 Score=21.13 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCCC--ccceeecCCcCC
Q 038778 14 EQIFCLLEKKRLNPHFS--HHTIKDIDDICS 42 (127)
Q Consensus 14 eELi~~yL~~k~~g~~~--~~~I~~~~dvy~ 42 (127)
.++ ..||++++.|+|+ .+.|. + ++++
T Consensus 27 ~~~-~~~lk~~L~grPV~~GD~I~-i-~~~G 54 (83)
T 2jv2_A 27 PDF-VDVIRIKLQGKTVRTGDVIG-I-SILG 54 (83)
T ss_dssp HHH-HHHHHHHHTTSEECTTCEEE-E-EETT
T ss_pred ccH-HHHHHHHHCCCCccCCCEEE-E-eeCC
Confidence 555 4599999999998 45554 6 5544
No 42
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=24.43 E-value=26 Score=26.96 Aligned_cols=18 Identities=0% Similarity=-0.359 Sum_probs=13.8
Q ss_pred CCCCceEc-CCHHHHHHHHH
Q 038778 3 SLMGFRFQ-PSNEQIFCLLE 21 (127)
Q Consensus 3 lppG~rF~-PtDeELi~~yL 21 (127)
+||- .|. ||+++|+.||-
T Consensus 125 ~~P~-y~~~~s~~~l~~~f~ 143 (344)
T 2hmc_A 125 IPRV-LSRGSVIAAQKAHFK 143 (344)
T ss_dssp CCCC-SSSTTCHHHHHHHHH
T ss_pred CCCc-cCCCCCHHHHHHHHH
Confidence 4554 477 89999999874
No 43
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development, SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=23.96 E-value=86 Score=19.92 Aligned_cols=16 Identities=6% Similarity=-0.132 Sum_probs=12.9
Q ss_pred cCCHHHHHHHHHHHhc
Q 038778 10 QPSNEQIFCLLEKKRL 25 (127)
Q Consensus 10 ~PtDeELi~~yL~~k~ 25 (127)
-||-.|||.+|....+
T Consensus 80 F~sl~eLV~~y~~~~~ 95 (116)
T 2kk6_A 80 FSNIPQLIDHHYTTKQ 95 (116)
T ss_dssp ESCHHHHHHHHHHTTC
T ss_pred eCCHHHHHHHHhhCCC
Confidence 4799999999987654
No 44
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=23.73 E-value=54 Score=19.40 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=15.0
Q ss_pred cCCHHHHHHHHHHHhcCCCCC
Q 038778 10 QPSNEQIFCLLEKKRLNPHFS 30 (127)
Q Consensus 10 ~PtDeELi~~yL~~k~~g~~~ 30 (127)
.|||+||.. .++.-+...++
T Consensus 11 ~Psd~ei~~-~I~~IL~~aDL 30 (70)
T 1q1v_A 11 PPTDEELKE-TIKKLLASANL 30 (70)
T ss_dssp CCCHHHHHH-HHHHHHTTSCG
T ss_pred CcCHHHHHH-HHHHHHHhCCH
Confidence 599999998 56666666655
No 45
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=22.71 E-value=49 Score=20.67 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=11.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCC
Q 038778 10 QPSNEQIFCLLEKKRLNPHFS 30 (127)
Q Consensus 10 ~PtDeELi~~yL~~k~~g~~~ 30 (127)
.|+.+|||.|.|. |..-.++
T Consensus 62 ~~~~~e~Ik~~l~-~~~~~~~ 81 (87)
T 3g1g_A 62 LTTPGEIIKYVLD-RQKTAPL 81 (87)
T ss_dssp CCSHHHHHHHHHH-HHC----
T ss_pred CCChHHHHHHHHH-HhhcCCc
Confidence 4778999996554 4443343
No 46
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=20.19 E-value=53 Score=18.64 Aligned_cols=15 Identities=7% Similarity=0.330 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhcCCC
Q 038778 13 NEQIFCLLEKKRLNPH 28 (127)
Q Consensus 13 DeELi~~yL~~k~~g~ 28 (127)
|+.=|. ||.+||...
T Consensus 35 d~qRi~-YLqrKia~~ 49 (55)
T 4ds7_E 35 DDNRLR-ILRDRIESS 49 (55)
T ss_dssp HHHHHH-HHHHC----
T ss_pred hHHHHH-HHHHHHhcc
Confidence 556666 999999654
Done!