BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038779
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 138 bits (347), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 166/350 (47%), Gaps = 29/350 (8%)
Query: 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLN-L 60
+G IP + N L + +S N L G IP L L + N L G +P L +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 61 SSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNY 120
+L+ L L N G IP+ L + L + L++N +G IP I L NL +L L N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 121 LQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAG 180
G IP +L + + L +DL+ N FNG+IP+ + F GK + + AG
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGK---------IAANFIAG 572
Query: 181 AAGTY-DNSNLEMYLSNGAHGPPGQHVEVEFVTK--NRN------ELYNG------SNLD 225
Y N ++ + Q + E + + RN +Y G N
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 226 YMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRL 285
M LD+S N L+G IP EIG + + LNL HN +SGSIP+ +L+ LDLS N+L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 286 RGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCG 335
GR+ ++ L L+ ++S NNLSG +P+ GQF F + + N LCG
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 153/318 (48%), Gaps = 27/318 (8%)
Query: 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLS 61
S IP ++G+ L + +S N+L G+ +S +L++S N G +P L L
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLK 269
Query: 62 SLKHLYLRKNGFNGPIPNALFRSSELLT-LDLTDNHFSGRIPHQINTLSNLRVLLLRGNY 120
SL++L L +N F G IP+ L + + LT LDL+ NHF G +P + S L L L N
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 121 LQGPIP-NQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIEL---NLEWD 176
G +P + L +++ L ++DLS N F+G +P LT++S L ++L N
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA------SLLTLDLSSNNFSGP 383
Query: 177 LGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNE 236
+ N+ E+YL N F K L N S L L LS N
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNG-----------FTGKIPPTLSNCSEL---VSLHLSFNY 429
Query: 237 LTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTEL 296
L+G IP +G L +R L L N L G IP+ +K E+L L +N L G + L+
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 297 NFLSNFNVSYNNLSGLVP 314
L+ ++S N L+G +P
Sbjct: 490 TNLNWISLSNNRLTGEIP 507
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 149/337 (44%), Gaps = 42/337 (12%)
Query: 16 LAVMIMSKNRLEGNIPPELSKFGGPLI-LDVSENCLSGNMPSSL---NLSSLKHLYLRKN 71
L V+ +S N G +P L+ L+ LD+S N SG + +L ++L+ LYL+ N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 72 GFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCE 131
GF G IP L SEL++L L+ N+ SG IP + +LS LR L L N L+G IP +L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 132 LQKLGIMDLSHNRFNGSIPSCL---TSVSFWSQGKNDLYG-------------------- 168
++ L + L N G IPS L T++++ S N L G
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 169 -IELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYM 227
N+ +LG + + + N ++ NG P + + N G Y+
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLF--NGTI-PAAMFKQSGKIAAN---FIAGKRYVYI 578
Query: 228 S--GLDLSCN------ELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLD 279
G+ C+ E G ++ L N++ G +F N LD
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 280 LSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDK 316
+SYN L G + + + +L N+ +N++SG +PD+
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 141/300 (47%), Gaps = 38/300 (12%)
Query: 2 LSGHIPSWI-GNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMP--SSL 58
+G IP ++ G L + +S N G +PP L +S N SG +P + L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 59 NLSSLKHLYLRKNGFNGPIPNALFR-SSELLTLDLTDNHFSGRIPHQI--NTLSNLRVLL 115
+ LK L L N F+G +P +L S+ LLTLDL+ N+FSG I + N + L+ L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 116 LRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEW 175
L+ N G IP L +L + LS N +G+IPS L S+S K L +E +
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 176 DLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNR------NELYNGSNLDYMSG 229
+L MY+ + +E + N + L N +NL+++S
Sbjct: 461 EL--------------MYV---------KTLETLILDFNDLTGEIPSGLSNCTNLNWIS- 496
Query: 230 LDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRV 289
LS N LTG IP IG L+N+ L LS+N SG+IP + + LDL+ N G +
Sbjct: 497 --LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 1 MLSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLN- 59
MLSG+IP IG+ P L ++ + N + G+IP E+ G ILD+S N L G +P +++
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 60 LSSLKHLYLRKNGFNGPIP 78
L+ L + L N +GPIP
Sbjct: 703 LTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 166/350 (47%), Gaps = 29/350 (8%)
Query: 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLN-L 60
+G IP + N L + +S N L G IP L L + N L G +P L +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 61 SSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNY 120
+L+ L L N G IP+ L + L + L++N +G IP I L NL +L L N
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 121 LQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAG 180
G IP +L + + L +DL+ N FNG+IP+ + F GK + + AG
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM----FKQSGK---------IAANFIAG 569
Query: 181 AAGTY-DNSNLEMYLSNGAHGPPGQHVEVEFVTK--NRN------ELYNG------SNLD 225
Y N ++ + Q + E + + RN +Y G N
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 226 YMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRL 285
M LD+S N L+G IP EIG + + LNL HN +SGSIP+ +L+ LDLS N+L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 286 RGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCG 335
GR+ ++ L L+ ++S NNLSG +P+ GQF F + + N LCG
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 102/318 (32%), Positives = 153/318 (48%), Gaps = 27/318 (8%)
Query: 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLS 61
S IP ++G+ L + +S N+L G+ +S +L++S N G +P L L
Sbjct: 209 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLK 266
Query: 62 SLKHLYLRKNGFNGPIPNALFRSSELLT-LDLTDNHFSGRIPHQINTLSNLRVLLLRGNY 120
SL++L L +N F G IP+ L + + LT LDL+ NHF G +P + S L L L N
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 121 LQGPIP-NQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIEL---NLEWD 176
G +P + L +++ L ++DLS N F+G +P LT++S L ++L N
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA------SLLTLDLSSNNFSGP 380
Query: 177 LGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNE 236
+ N+ E+YL N F K L N S L L LS N
Sbjct: 381 ILPNLCQNPKNTLQELYLQNNG-----------FTGKIPPTLSNCSEL---VSLHLSFNY 426
Query: 237 LTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTEL 296
L+G IP +G L +R L L N L G IP+ +K E+L L +N L G + L+
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 297 NFLSNFNVSYNNLSGLVP 314
L+ ++S N L+G +P
Sbjct: 487 TNLNWISLSNNRLTGEIP 504
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 149/337 (44%), Gaps = 42/337 (12%)
Query: 16 LAVMIMSKNRLEGNIPPELSKFGGPLI-LDVSENCLSGNMPSSL---NLSSLKHLYLRKN 71
L V+ +S N G +P L+ L+ LD+S N SG + +L ++L+ LYL+ N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 72 GFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCE 131
GF G IP L SEL++L L+ N+ SG IP + +LS LR L L N L+G IP +L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 132 LQKLGIMDLSHNRFNGSIPSCL---TSVSFWSQGKNDLYG-------------------- 168
++ L + L N G IPS L T++++ S N L G
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 169 -IELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYM 227
N+ +LG + + + N ++ NG P + + N G Y+
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLF--NGTI-PAAMFKQSGKIAAN---FIAGKRYVYI 575
Query: 228 S--GLDLSCN------ELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLD 279
G+ C+ E G ++ L N++ G +F N LD
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 280 LSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDK 316
+SYN L G + + + +L N+ +N++SG +PD+
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 141/300 (47%), Gaps = 38/300 (12%)
Query: 2 LSGHIPSWI-GNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMP--SSL 58
+G IP ++ G L + +S N G +PP L +S N SG +P + L
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 59 NLSSLKHLYLRKNGFNGPIPNALFR-SSELLTLDLTDNHFSGRIPHQI--NTLSNLRVLL 115
+ LK L L N F+G +P +L S+ LLTLDL+ N+FSG I + N + L+ L
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 116 LRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEW 175
L+ N G IP L +L + LS N +G+IPS L S+S K L +E +
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 176 DLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNR------NELYNGSNLDYMSG 229
+L MY+ + +E + N + L N +NL+++S
Sbjct: 458 EL--------------MYV---------KTLETLILDFNDLTGEIPSGLSNCTNLNWIS- 493
Query: 230 LDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRV 289
LS N LTG IP IG L+N+ L LS+N SG+IP + + LDL+ N G +
Sbjct: 494 --LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 1 MLSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLN- 59
MLSG+IP IG+ P L ++ + N + G+IP E+ G ILD+S N L G +P +++
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 60 LSSLKHLYLRKNGFNGPIP 78
L+ L + L N +GPIP
Sbjct: 700 LTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 122/285 (42%), Gaps = 47/285 (16%)
Query: 54 MPSSL-NLSSLKHLYLRK-NGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNL 111
+PSSL NL L LY+ N GPIP A+ + ++L L +T + SG IP ++ + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 112 RVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIEL 171
L N L G +P + L L + NR +G+IP D YG
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP--------------DSYG--- 170
Query: 172 NLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLD 231
+ + + + G P ++ + FV D
Sbjct: 171 --------SFSKLFTSMTISRNRLTGKIPPTFANLNLAFV-------------------D 203
Query: 232 LSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSP 291
LS N L G V G +N + ++L+ N L+ + + + K LDL NR+ G +
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQ 262
Query: 292 RLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCGS 336
LT+L FL + NVS+NNL G +P G FD S Y N LCGS
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 117/266 (43%), Gaps = 51/266 (19%)
Query: 6 IPSWIGNFPVLAVM-IMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLK 64
IPS + N P L + I N L G IPP ++K L+ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-----------------------LTQLH 104
Query: 65 HLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGP 124
+LY+ +G IP+ L + L+TLD + N SG +P I++L NL + GN + G
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 125 IPNQLCELQKLGI-MDLSHNRFNGSIPSCLT--SVSFWSQGKNDLYGIELNLEWDLGAGA 181
IP+ KL M +S NR G IP +++F +N L G A
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG---------DASV 215
Query: 182 AGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGI 241
D + +++L+ + ++ V ++N ++GLDL N + G +
Sbjct: 216 LFGSDKNTQKIHLAKNSLA-----FDLGKVGLSKN----------LNGLDLRNNRIYGTL 260
Query: 242 PVEIGELQNVRSLNLSHNYLSGSIPE 267
P + +L+ + SLN+S N L G IP+
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLS 61
+SG IP ++ L + S N L G +PP +S + + N +SG +P S
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 62 S--LKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGN 119
S + + +N G IP F + L +DL+ N G + N + + L N
Sbjct: 173 SKLFTSMTISRNRLTGKIP-PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 120 YLQGPIPNQLCELQKLGI------MDLSHNRFNGSIPSCLTSVSF 158
L +L K+G+ +DL +NR G++P LT + F
Sbjct: 232 SLA-------FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 4/150 (2%)
Query: 12 NFPVLAVMIMSKNRLEGNIPPELSKFGGPLI--LDVSENCLSGNMPSSLNLSSLKHLYLR 69
+ P L + +S+N L S FG + LD+S N + + L L L+HL +
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
Query: 70 KNGFNGPIPNALFRS-SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQ-GPIPN 127
+ ++F S L+ LD++ H N LS+L VL + GN Q +P+
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 128 QLCELQKLGIMDLSHNRFNGSIPSCLTSVS 157
EL+ L +DLS + P+ S+S
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 245 IGELQNVRSLNLSHNYL-SGSIPESFFNLKMTESLDLSYNRLRG 287
IG L+ ++ LN++HN + S +PE F NL E LDLS N+++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 60 LSSLKHLYLRKNGFN-GPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRG 118
LSSL+ L + N F +P+ L LDL+ P N+LS+L+VL +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 119 NYLQGP---IPNQLCELQKL 135
N L+ I ++L LQK+
Sbjct: 504 NQLKSVPDGIFDRLTSLQKI 523
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 245 IGELQNVRSLNLSHNYL-SGSIPESFFNLKMTESLDLSYNRLRG 287
IG L+ ++ LN++HN + S +PE F NL E LDLS N+++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 245 IGELQNVRSLNLSHNYL-SGSIPESFFNLKMTESLDLSYNRLRG 287
IG L+ ++ LN++HN + S +PE F NL E LDLS N+++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 245 IGELQNVRSLNLSHNYL-SGSIPESFFNLKMTESLDLSYNRLRG 287
IG L+ ++ LN++HN + S +PE F NL E LDLS N+++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 245 IGELQNVRSLNLSHNYL-SGSIPESFFNLKMTESLDLSYNRLRG 287
IG L+ ++ LN++HN + S +PE F NL E LDLS N+++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 245 IGELQNVRSLNLSHNYL-SGSIPESFFNLKMTESLDLSYNRLRG 287
IG L+ ++ LN++HN + S +PE F NL E LDLS N+++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 245 IGELQNVRSLNLSHNYL-SGSIPESFFNLKMTESLDLSYNRLRG 287
IG L+ ++ LN++HN + S +PE F NL E LDLS N+++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 245 IGELQNVRSLNLSHNYL-SGSIPESFFNLKMTESLDLSYNRLRG 287
IG L+ ++ LN++HN + S +PE F NL E LDLS N+++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 227 MSGLDLSCNELTGG--IPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNR 284
+ LDLS N++ +++ L ++++LNLSHN G ++F E LDL++ R
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 285 LR--GRVSPRLTELNFLSNFNVSY 306
L SP L+FL N++Y
Sbjct: 409 LHINAPQSP-FQNLHFLQVLNLTY 431
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 56 SSLNLSSLKHLYLRKNGFNGPI-PNALFRSSELLTLDLTDNHFSGR--IPHQINTLSNLR 112
S+ N SL HLY+R N + L + L TLDL+ N Q+ LS+L+
Sbjct: 317 SAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQ 376
Query: 113 VLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIP 150
L L N G E +L ++DL+ R + + P
Sbjct: 377 TLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAP 414
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 247 ELQNVRSLNLSHNYLSGSIPESFFNLKMT--ESLDLSYNRLRGRVSPRLTELNFLSNFNV 304
+L N+ LNL+HN L S+P+ F+ K+T LDLSYN+L+ +L L + +
Sbjct: 131 KLTNLTYLNLAHNQLQ-SLPKGVFD-KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 305 SYNNLSGLVPDKGQFAIFDE 324
N L VPD +FD
Sbjct: 189 YQNQLKS-VPD----GVFDR 203
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 169 IELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVE----VEFVTKNRNELYNGSNL 224
I+ NL+ A + ++++ ++N + Q ++ V ++ N+L++ S L
Sbjct: 22 IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL 81
Query: 225 DYMSGLD---LSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMT--ESLD 279
++ L L+ N+L +L N++ L L N L S+P+ F+ K+T L+
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFD-KLTNLTYLN 139
Query: 280 LSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGL 312
L++N+L+ +L L+ ++SYN L L
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 222 SNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFN-LKMTESLDL 280
+NL Y L+L+ N+L +L N+ L+LS+N L S+PE F+ L + L L
Sbjct: 133 TNLTY---LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRL 188
Query: 281 SYNRLRGR---VSPRLTELNFL 299
N+L+ V RLT L ++
Sbjct: 189 YQNQLKSVPDGVFDRLTSLQYI 210
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 245 IGELQNVRSLNLSHNYL-SGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLS--- 300
IG+L ++ LN++HN++ S +P F NL +DLSYN ++ + + +L FL
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ---TITVNDLQFLRENP 175
Query: 301 ----NFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCGSIINKSC 342
+ ++S N + + Q E RGN + S I K+C
Sbjct: 176 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN--SSNIMKTC 219
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 245 IGELQNVRSLNLSHNYL-SGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLS--- 300
IG+L ++ LN++HN++ S +P F NL +DLSYN ++ + + +L FL
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ---TITVNDLQFLRENP 180
Query: 301 ----NFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCGSIINKSC 342
+ ++S N + + Q E RGN + S I K+C
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN--SSNIMKTC 224
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 222 SNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLS 281
S+ + L L+ NE+ L ++ LNLS N+L F NL E LDLS
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355
Query: 282 YNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDE 324
YN +R L L + N L VPD IFD
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD----GIFDR 393
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 201 PPGQHVEVEFVTKNRNELYNG--SNLDYMSGLDLSCN--ELTGGIPVEIGELQNVRSLNL 256
P H+ ++ TK R EL G NL+ + LDLS + E + +++ L +++SLNL
Sbjct: 325 PSLTHLSIKGNTK-RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383
Query: 257 SHNYLSGSIPESFFNLKMTESLDLSYNRLRGR-VSPRLTELNFLSNFNVSYN 307
S+N E+F E LDL++ RL+ + L+ L N+S++
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 114/302 (37%), Gaps = 65/302 (21%)
Query: 62 SLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYL 121
S++ + L+K+ F N S L LDLT H S +P + LS L+ L+L N
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313
Query: 122 QGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGA 181
+ LC++ L+H G+ G L +E E DL
Sbjct: 314 EN-----LCQISASNFPSLTHLSIKGNTKR-------LELGTGCLENLENLRELDLSHDD 361
Query: 182 AGTYDNSNLEMYLSNGAH---------------------GPPGQHVEVEFVT-KNRNELY 219
T D NL+ L N +H P + +++ F K ++
Sbjct: 362 IETSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 220 NGSNLDYM-------SGLDLSCNELTGGIPV-----------EIGELQNVRSLN------ 255
NL + S LD+S +L G+P G +Q SL
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479
Query: 256 ---LSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGL 312
LS LS +F +LKM +DLS+NRL L+ L + N++ N++S +
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISII 538
Query: 313 VP 314
+P
Sbjct: 539 LP 540
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 225 DYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPE---SFFNLK 273
D+++ L L+ N LT +P EI L N+R L+LSHN L+ S+P S F LK
Sbjct: 247 DFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 94 DNHFSGRIPHQINTLSNLRVLLLRGN----------YLQG----PIPNQLCELQKLGIMD 139
D+ + ++ H ++ LSNL++ + N YL G +P ++ L L ++D
Sbjct: 218 DSKYDDQLWHALD-LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLD 276
Query: 140 LSHNRFNGSIPSCLTS 155
LSHNR S+P+ L S
Sbjct: 277 LSHNRLT-SLPAELGS 291
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 241 IPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPR 292
+P E+ +++ ++LS+N +S +SF N+ +L LSYNRLR + PR
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPR 96
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 5/131 (3%)
Query: 18 VMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMP--SSLNLSSLKHLYLRKNGFNG 75
++ SK +L N+P L + +LD+S N LS + L++L L L N N
Sbjct: 22 ILSCSKQQL-PNVPQSLPSYTA--LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78
Query: 76 PIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKL 135
A L LDL+ NH + L L VLLL N++ N ++ +L
Sbjct: 79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL 138
Query: 136 GIMDLSHNRFN 146
+ LS N+ +
Sbjct: 139 QKLYLSQNQIS 149
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 124/303 (40%), Gaps = 41/303 (13%)
Query: 21 MSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPN 79
+ KNR++ E + F L+++EN +S P + NL +L+ L LR N IP
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPL 97
Query: 80 ALFRS-SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIM 138
+F S L LD+++N + + L NL+ L + N ++
Sbjct: 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN----------------DLV 141
Query: 139 DLSHNRFNG-------SIPSC-LTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNL 190
+SH F+G ++ C LTS+ ++ + L+G+ + L A Y L
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIP--TEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 191 -EMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQ 249
+ + +H P T N LY G NL + L ++ LT + + L
Sbjct: 200 YRLKVLEISHWP-------YLDTMTPNCLY-GLNL---TSLSITHCNLTAVPYLAVRHLV 248
Query: 250 NVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNL 309
+R LNLS+N +S L + + L +L LN+L NVS N L
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 310 SGL 312
+ L
Sbjct: 309 TTL 311
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 114/273 (41%), Gaps = 29/273 (10%)
Query: 61 SSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNY 120
+ ++ L L NG +P+ + + L L L N F + +LR L ++GN
Sbjct: 277 TRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNM 335
Query: 121 LQGPIPNQLCE-LQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWD--L 177
+ + + E L+ L +DLSH+ S L Q KN + LNL ++ L
Sbjct: 336 RKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNL-------QLKNLRHLQYLNLSYNEPL 388
Query: 178 GAGAAGTYDNSNLEM------YLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGL- 230
G + LE+ +L A P Q++ + V + L + SN ++GL
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 231 -----DLSCNELTGGIPVEIGELQNVRSLNL----SHNYLSGSIPESFFNLKMTESLDLS 281
+L N G + LQ V SL + S N LS ++F L+ LDLS
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSID-QQAFHGLRNVNHLDLS 507
Query: 282 YNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVP 314
+N L G L+ L L N++ NN+ + P
Sbjct: 508 HNSLTGDSMDALSHLKGLY-LNMASNNIRIIPP 539
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 6/145 (4%)
Query: 11 GNFPVLAVMIMSKNRLEGNIPPE-LSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLR 69
+FP L + + N + ++ L K LD+S + + + +L L +L+HL
Sbjct: 321 ASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYL 380
Query: 70 KNGFNGPI---PNALFRSSELLTLDLTDNHFSGRIPHQ-INTLSNLRVLLLRGNYLQGPI 125
+N P+ A +L LD+ H + PH L LRVL L L
Sbjct: 381 NLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSN 440
Query: 126 PNQLCELQKLGIMDLSHNRF-NGSI 149
+ L LQ L ++L N F +GSI
Sbjct: 441 QHLLAGLQDLRHLNLQGNSFQDGSI 465
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 219 YNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPES--------FF 270
Y G N S + LS NE+ P E+ + S + N L SIPE+ +
Sbjct: 670 YKGIN---ASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLXTSIPENSLKPKDGNYK 725
Query: 271 NLKMTESLDLSYNRLRGRVSP-RLTELNFLSNFNVSYNNLSGL 312
N + ++DL +N+L R T L +LSN +VSYN S
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNXDVSYNCFSSF 768
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 250 NVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNL 309
+VR L+LSH ++ F LK + L+L+YN++ L+ L N+SYN L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 310 SGL 312
L
Sbjct: 327 GEL 329
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 248 LQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYN 307
L++++ LNL++N ++ E+F+ L + L+LSYN L L NF V+Y
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-----GELYSSNFYGLPKVAYI 343
Query: 308 NLSGLVPDKGQFAIFDESNYR 328
+L K AI + ++
Sbjct: 344 DLQ-----KNHIAIIQDQTFK 359
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 247 ELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSY 306
E +VR L+L+H L+ + L + LDLS+NRLR + P L L L S
Sbjct: 439 EYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495
Query: 307 NNLSGL 312
N L +
Sbjct: 496 NALENV 501
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 247 ELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSY 306
E +VR L+L+H L+ + L + LDLS+NRLR + P L L L S
Sbjct: 439 EYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASD 495
Query: 307 NNLSGL 312
N L +
Sbjct: 496 NALENV 501
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 59 NLSSLKHLYLRKNGFNGPIPNALF-RSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLR 117
+L+ L LYL N +P+ +F R ++L L L N + L+NL+ L L
Sbjct: 105 HLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 118 GNYLQGPIPNQLCELQKLGIMDLSHNRFNGS 148
N LQ L KL + L N+F+ S
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 214 NRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLK 273
N ++ N + L + L+LS N L P L ++R L L H ++ +F +LK
Sbjct: 167 NLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 274 MTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYN 307
E L+LS+N L T L+ L ++++N
Sbjct: 227 SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 59 NLSSLKHLYLRKNGFNGPIPNALF-RSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLR 117
+L+ L LYL N +P+ +F R ++L L L N + L+NL+ L L
Sbjct: 105 HLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 118 GNYLQGPIPNQLCELQKLGIMDLSHNRFNGS 148
N LQ L KL + L N+F+ S
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 223 NLDYMSGLDLSCNEL-TGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLS 281
N+ + LD+S N L + +++ LNLS N L+GS+ + LDL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLH 458
Query: 282 YNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDE 324
NR+ + +T L L NV+ N L VPD +FD
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD----GVFDR 495
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 197 GAHGPPGQHVEVEFVTKNRNELYNGSNLD-YMSGLDLSCNELTGGIPVEIGELQNVRSLN 255
G+ P +E NRN + +L L LS N ++ +I L +R L
Sbjct: 23 GSMTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLR 82
Query: 256 LSHNYLSGSIPESFFNLKMTESLDLSYNRLR 286
LSHN + F + E LD+S+NRL+
Sbjct: 83 LSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 173 LEWDLGAGAAGTYDNSNLEMYLSNGAHGPPG---QHVEVEFVTKNRNELYNGSNLDYMSG 229
++W L + A D+S+ E+ LS H P G + +F K LY G + +G
Sbjct: 48 IKWILSSAAPQGSDSSDSELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTG 107
Query: 230 L 230
L
Sbjct: 108 L 108
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 214 NRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLK 273
N ++ N + L + L+LS N L P L ++R L L H ++ +F +LK
Sbjct: 167 NLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLK 226
Query: 274 MTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYN 307
E L+LS+N L T L+ L ++++N
Sbjct: 227 SLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 225 DYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNR 284
+ + LDLS N +T ++ N+++L L+ N ++ +SF +L E LDLSYN
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 285 LRGRVSPRLTELNFLSNFNV 304
L S L+ L+ N+
Sbjct: 112 LSNLSSSWFKPLSSLTFLNL 131
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 237 LTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMT--ESLDLSYNRLRGRVSPRLT 294
LT + +E+ ++R+L+LS++ LS + +F LK T LDLSYN L +
Sbjct: 211 LTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269
Query: 295 ELNFLSNFNVSYNNLSGL 312
L L F + YNN+ L
Sbjct: 270 WLPQLEYFFLEYNNIQHL 287
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 250 NVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTE-LNFLSNFNVSYNN 308
N+ LNL+HN L +F SLD+ +N + ++ P L + L L N+ +N
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNE 84
Query: 309 LSGL 312
LS L
Sbjct: 85 LSQL 88
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 237 LTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMT--ESLDLSYNRLRGRVSPRLT 294
LT + +E+ ++R+L+LS++ LS + +F LK T LDLSYN L +
Sbjct: 221 LTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 279
Query: 295 ELNFLSNFNVSYNNLSGL 312
L L F + YNN+ L
Sbjct: 280 WLPQLEYFFLEYNNIQHL 297
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 250 NVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTE-LNFLSNFNVSYNN 308
N+ LNL+HN L +F SLD+ +N + ++ P L + L L N+ +N
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNE 94
Query: 309 LSGL 312
LS L
Sbjct: 95 LSQL 98
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 237 LTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMT--ESLDLSYNRLRGRVSPRLT 294
LT + +E+ ++R+L+LS++ LS + +F LK T LDLSYN L +
Sbjct: 216 LTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 274
Query: 295 ELNFLSNFNVSYNNLSGL 312
L L F + YNN+ L
Sbjct: 275 WLPQLEYFFLEYNNIQHL 292
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 250 NVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTE-LNFLSNFNVSYNN 308
N+ LNL+HN L +F SLD+ +N + ++ P L + L L N+ +N
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNE 89
Query: 309 LSGL 312
LS L
Sbjct: 90 LSQL 93
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 71/258 (27%)
Query: 124 PIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAG 183
P+ L + +KLG ++ +N+ G +P+ F S+ K + N ++ A G
Sbjct: 321 PVETSLQKXKKLGXLECLYNQLEGKLPA------FGSEIKLASLNLAYNQITEIPANFCG 374
Query: 184 -TYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGI- 241
T NL H +++++ +++ ++ S +D S NE+ G +
Sbjct: 375 FTEQVENLSF-----------AHNKLKYIPN----IFDAKSVSVXSAIDFSYNEI-GSVD 418
Query: 242 -----PVEIGELQ--NVRSLNLSHNYLSG-----------------------SIP----- 266
P++ + NV S+NLS+N +S IP
Sbjct: 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLK 478
Query: 267 ---ESFFNLKMTESLDLSYNRLRGRVSP-RLTELNFLSNFNVSYNNLSGLVPD------- 315
E+F N + S+DL +N+L R T L +L ++SYN+ S
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538
Query: 316 KGQFAIFDESNYRGNIHL 333
KG F I ++ + +GN L
Sbjct: 539 KG-FGIRNQRDAQGNRTL 555
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 225 DYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNR 284
+ + LDLS N +T ++ N+++L L+ N ++ +SF +L E LDLSYN
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 285 LRGRVSPRLTELNFLSNFNV 304
L S L+ L+ N+
Sbjct: 86 LSNLSSSWFKPLSSLTFLNL 105
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 247 ELQN--VRSLNLSHNYLSGSIPESFFNLKMT--ESLDLSYNRLRGRVSPRLTELNFLSNF 302
EL N +++L+L++N L + +F LK T LDLSYN L + + L L
Sbjct: 218 ELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYL 277
Query: 303 NVSYNNLSGLVP 314
++ YNN+ L P
Sbjct: 278 SLEYNNIQRLSP 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,397,685
Number of Sequences: 62578
Number of extensions: 580945
Number of successful extensions: 1484
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 297
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)