Query 038779
Match_columns 420
No_of_seqs 347 out of 3644
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-38 2.8E-43 339.1 23.1 336 2-337 248-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.6E-36 7.7E-41 320.4 22.0 336 2-337 200-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.4E-35 1.2E-39 270.7 1.5 322 10-332 98-428 (873)
4 KOG4194 Membrane glycoprotein 100.0 7.6E-34 1.7E-38 263.1 2.3 348 5-352 116-487 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.5E-29 3.3E-34 236.5 -1.7 279 5-336 94-378 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.4E-29 3.1E-34 236.7 -6.3 297 4-330 22-326 (1255)
7 KOG4237 Extracellular matrix p 99.9 2.5E-29 5.4E-34 223.3 -4.7 304 5-331 60-380 (498)
8 KOG0472 Leucine-rich repeat pr 99.9 9.8E-30 2.1E-34 226.3 -7.9 319 6-333 152-541 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 1.4E-27 3.1E-32 212.6 -8.4 262 15-333 46-310 (565)
10 KOG4237 Extracellular matrix p 99.9 7.9E-26 1.7E-30 201.2 -3.8 301 19-337 51-363 (498)
11 PRK15387 E3 ubiquitin-protein 99.9 3.1E-22 6.7E-27 200.5 15.3 249 5-315 215-463 (788)
12 PRK15387 E3 ubiquitin-protein 99.9 7.3E-21 1.6E-25 190.7 15.6 259 14-334 201-459 (788)
13 PRK15370 E3 ubiquitin-protein 99.9 3.1E-21 6.6E-26 194.5 12.6 245 15-310 179-428 (754)
14 KOG0618 Serine/threonine phosp 99.9 4.6E-23 9.9E-28 201.3 -1.0 314 2-334 168-490 (1081)
15 PLN03210 Resistant to P. syrin 99.8 4.6E-20 1E-24 197.9 20.6 303 6-332 580-905 (1153)
16 PRK15370 E3 ubiquitin-protein 99.8 7.3E-21 1.6E-25 191.8 12.6 232 5-286 192-428 (754)
17 PLN03210 Resistant to P. syrin 99.8 2.7E-19 5.9E-24 192.0 21.6 292 5-308 603-904 (1153)
18 KOG0618 Serine/threonine phosp 99.8 1.6E-21 3.4E-26 190.7 -4.2 228 6-309 256-488 (1081)
19 KOG0617 Ras suppressor protein 99.8 2E-21 4.4E-26 154.3 -3.0 185 53-311 25-213 (264)
20 cd00116 LRR_RI Leucine-rich re 99.8 7.4E-21 1.6E-25 177.7 -1.4 263 6-332 15-319 (319)
21 KOG0617 Ras suppressor protein 99.8 1.5E-21 3.2E-26 155.1 -5.5 181 81-334 29-213 (264)
22 cd00116 LRR_RI Leucine-rich re 99.8 5.3E-20 1.2E-24 171.9 -0.9 252 18-333 2-291 (319)
23 PLN03150 hypothetical protein; 99.6 5.5E-16 1.2E-20 155.8 9.3 118 226-343 419-538 (623)
24 KOG0532 Leucine-rich repeat (L 99.5 1.7E-15 3.6E-20 141.7 -3.4 212 18-308 54-271 (722)
25 KOG0532 Leucine-rich repeat (L 99.5 1.5E-15 3.3E-20 142.0 -3.7 193 13-283 74-270 (722)
26 COG4886 Leucine-rich repeat (L 99.4 1.4E-13 3.1E-18 132.3 7.5 198 42-315 97-295 (394)
27 COG4886 Leucine-rich repeat (L 99.4 1.8E-13 3.8E-18 131.7 7.1 200 18-293 97-297 (394)
28 PLN03150 hypothetical protein; 99.4 2E-12 4.4E-17 130.2 11.0 92 224-315 441-533 (623)
29 PF14580 LRR_9: Leucine-rich r 99.3 1.9E-12 4.2E-17 107.5 4.9 124 12-140 17-147 (175)
30 KOG1259 Nischarin, modulator o 99.3 1.1E-12 2.3E-17 114.0 0.8 225 13-313 181-415 (490)
31 KOG3207 Beta-tubulin folding c 99.2 8.4E-13 1.8E-17 120.2 -1.4 132 13-145 120-258 (505)
32 KOG1259 Nischarin, modulator o 99.2 1.6E-12 3.4E-17 113.0 -0.7 138 4-147 274-413 (490)
33 KOG3207 Beta-tubulin folding c 99.2 3.7E-12 8.1E-17 116.0 0.9 137 9-146 141-284 (505)
34 KOG1909 Ran GTPase-activating 99.2 1.4E-12 3E-17 115.7 -2.5 236 11-310 27-311 (382)
35 PF14580 LRR_9: Leucine-rich r 99.2 1.8E-11 4E-16 101.7 3.6 110 34-146 15-126 (175)
36 KOG0531 Protein phosphatase 1, 99.1 7E-12 1.5E-16 120.9 -0.4 84 227-313 234-321 (414)
37 PF13855 LRR_8: Leucine rich r 99.1 5.5E-11 1.2E-15 81.4 4.1 57 63-119 3-59 (61)
38 PF13855 LRR_8: Leucine rich r 99.1 6.6E-11 1.4E-15 81.0 4.1 61 85-145 1-61 (61)
39 KOG0531 Protein phosphatase 1, 99.1 2E-11 4.3E-16 117.8 -0.0 217 12-310 70-290 (414)
40 KOG1909 Ran GTPase-activating 99.1 9.3E-12 2E-16 110.5 -2.6 215 8-286 52-311 (382)
41 KOG4658 Apoptotic ATPase [Sign 98.9 1.4E-09 3.1E-14 112.3 4.6 128 14-144 523-653 (889)
42 KOG4658 Apoptotic ATPase [Sign 98.8 1.3E-08 2.8E-13 105.3 8.4 107 13-120 544-653 (889)
43 KOG1859 Leucine-rich repeat pr 98.7 2.2E-10 4.8E-15 110.8 -8.6 58 86-146 165-222 (1096)
44 KOG1859 Leucine-rich repeat pr 98.6 9.4E-10 2E-14 106.5 -6.3 154 7-166 102-291 (1096)
45 KOG2982 Uncharacterized conser 98.5 5.5E-08 1.2E-12 85.0 1.7 222 39-305 46-287 (418)
46 KOG4579 Leucine-rich repeat (L 98.5 7E-09 1.5E-13 80.2 -3.5 135 15-154 28-167 (177)
47 KOG4579 Leucine-rich repeat (L 98.4 1.2E-08 2.6E-13 79.0 -3.7 60 225-286 77-136 (177)
48 PF12799 LRR_4: Leucine Rich r 98.3 9.3E-07 2E-11 55.4 3.2 39 14-53 1-39 (44)
49 COG5238 RNA1 Ran GTPase-activa 98.2 1.1E-07 2.4E-12 82.1 -1.5 63 224-286 213-285 (388)
50 KOG2120 SCF ubiquitin ligase, 98.2 2E-08 4.4E-13 87.7 -6.2 82 224-307 285-373 (419)
51 PF12799 LRR_4: Leucine Rich r 98.2 1.5E-06 3.3E-11 54.4 3.1 36 250-286 2-37 (44)
52 KOG2982 Uncharacterized conser 98.2 2.7E-07 5.8E-12 80.8 -0.5 225 13-286 44-290 (418)
53 PF13306 LRR_5: Leucine rich r 98.2 9.7E-06 2.1E-10 64.6 8.0 121 9-135 7-128 (129)
54 KOG1644 U2-associated snRNP A' 98.1 8.9E-06 1.9E-10 67.6 6.4 123 16-142 21-149 (233)
55 KOG1644 U2-associated snRNP A' 98.1 6E-06 1.3E-10 68.5 5.3 107 38-146 19-126 (233)
56 PRK15386 type III secretion pr 98.0 2.1E-05 4.5E-10 73.8 8.9 15 13-27 51-65 (426)
57 KOG2120 SCF ubiquitin ligase, 98.0 6.3E-08 1.4E-12 84.7 -8.2 177 61-283 185-373 (419)
58 COG5238 RNA1 Ran GTPase-activa 98.0 2.8E-06 6E-11 73.7 1.3 89 225-313 185-288 (388)
59 PRK15386 type III secretion pr 97.9 4.4E-05 9.5E-10 71.7 8.1 81 59-153 50-134 (426)
60 PF13306 LRR_5: Leucine rich r 97.8 7.9E-05 1.7E-09 59.3 7.9 121 30-156 4-125 (129)
61 KOG2739 Leucine-rich acidic nu 97.8 6.7E-06 1.4E-10 71.1 1.5 108 30-141 35-151 (260)
62 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.2E-10 80.9 2.2 132 14-147 122-264 (699)
63 KOG3665 ZYG-1-like serine/thre 97.6 1.4E-05 3E-10 81.1 0.2 107 38-146 122-233 (699)
64 KOG2739 Leucine-rich acidic nu 97.6 3.9E-05 8.4E-10 66.5 2.2 86 59-146 41-129 (260)
65 KOG2123 Uncharacterized conser 96.5 7.8E-05 1.7E-09 65.1 -5.6 99 38-139 19-123 (388)
66 KOG2123 Uncharacterized conser 96.2 0.0003 6.5E-09 61.6 -3.9 99 13-115 18-123 (388)
67 PF00560 LRR_1: Leucine Rich R 96.0 0.003 6.5E-08 32.8 1.0 21 15-36 1-21 (22)
68 PF00560 LRR_1: Leucine Rich R 95.9 0.0038 8.3E-08 32.4 1.1 19 251-270 2-20 (22)
69 KOG0473 Leucine-rich repeat pr 95.4 0.00041 8.9E-09 59.1 -6.0 86 34-122 38-124 (326)
70 KOG0473 Leucine-rich repeat pr 94.9 0.0011 2.3E-08 56.7 -5.0 84 224-310 41-124 (326)
71 KOG4308 LRR-containing protein 94.2 0.00018 4E-09 70.0 -12.7 82 16-97 89-184 (478)
72 KOG4308 LRR-containing protein 94.0 0.00021 4.5E-09 69.6 -12.8 84 63-146 89-185 (478)
73 PF13504 LRR_7: Leucine rich r 93.8 0.039 8.4E-07 26.5 1.2 13 15-27 2-14 (17)
74 smart00369 LRR_TYP Leucine-ric 93.3 0.06 1.3E-06 29.1 1.6 12 63-74 4-15 (26)
75 smart00370 LRR Leucine-rich re 93.3 0.06 1.3E-06 29.1 1.6 12 63-74 4-15 (26)
76 smart00370 LRR Leucine-rich re 92.5 0.1 2.2E-06 28.2 1.8 15 14-28 2-16 (26)
77 smart00369 LRR_TYP Leucine-ric 92.5 0.1 2.2E-06 28.2 1.8 15 14-28 2-16 (26)
78 TIGR00864 PCC polycystin catio 92.0 0.11 2.3E-06 59.7 2.9 37 279-315 1-37 (2740)
79 PF13516 LRR_6: Leucine Rich r 90.9 0.063 1.4E-06 28.4 -0.1 18 14-31 2-19 (24)
80 KOG3864 Uncharacterized conser 89.8 0.059 1.3E-06 45.4 -1.2 78 39-118 102-185 (221)
81 smart00365 LRR_SD22 Leucine-ri 84.7 0.83 1.8E-05 24.7 1.8 13 39-51 3-15 (26)
82 KOG1947 Leucine rich repeat pr 83.0 0.34 7.4E-06 47.7 -0.3 109 37-145 187-307 (482)
83 KOG1947 Leucine rich repeat pr 82.0 0.18 3.9E-06 49.7 -2.7 107 10-116 210-328 (482)
84 KOG3864 Uncharacterized conser 81.5 0.33 7.1E-06 41.0 -0.9 85 59-143 99-186 (221)
85 KOG4242 Predicted myosin-I-bin 76.9 14 0.00031 35.7 8.2 104 38-145 165-280 (553)
86 PF12273 RCR: Chitin synthesis 76.4 1.4 3E-05 34.9 1.3 8 389-396 21-28 (130)
87 smart00364 LRR_BAC Leucine-ric 76.0 2 4.4E-05 23.1 1.4 13 274-286 3-15 (26)
88 smart00368 LRR_RI Leucine rich 74.0 2.8 6E-05 23.0 1.7 14 273-286 2-15 (28)
89 PF01102 Glycophorin_A: Glycop 72.5 3 6.4E-05 32.4 2.2 15 373-387 69-83 (122)
90 KOG3763 mRNA export factor TAP 71.2 2.4 5.3E-05 41.4 1.8 80 59-139 216-307 (585)
91 KOG3763 mRNA export factor TAP 70.3 2.5 5.5E-05 41.4 1.7 13 86-98 271-283 (585)
92 PF15102 TMEM154: TMEM154 prot 69.9 2.7 5.8E-05 33.5 1.5 21 378-398 69-89 (146)
93 PF08693 SKG6: Transmembrane a 67.7 1.7 3.6E-05 26.1 -0.1 17 373-389 17-33 (40)
94 KOG4341 F-box protein containi 66.9 2.7 6E-05 39.7 1.1 133 13-145 293-438 (483)
95 PF01299 Lamp: Lysosome-associ 66.6 5.6 0.00012 36.8 3.1 12 373-384 277-288 (306)
96 PF15050 SCIMP: SCIMP protein 64.3 5.1 0.00011 30.4 1.9 29 369-397 8-36 (133)
97 KOG4341 F-box protein containi 62.5 2.7 5.9E-05 39.7 0.2 133 14-146 268-414 (483)
98 PF04478 Mid2: Mid2 like cell 60.5 3.2 7E-05 33.3 0.3 8 370-377 51-58 (154)
99 PF08374 Protocadherin: Protoc 60.1 3.9 8.4E-05 34.8 0.7 29 366-394 36-64 (221)
100 PF02009 Rifin_STEVOR: Rifin/s 57.7 6.5 0.00014 35.9 1.8 20 378-397 267-286 (299)
101 PF07204 Orthoreo_P10: Orthore 55.4 9.4 0.0002 27.7 1.9 31 365-395 39-69 (98)
102 PF14575 EphA2_TM: Ephrin type 53.1 17 0.00037 25.5 2.9 14 373-386 6-19 (75)
103 TIGR01478 STEVOR variant surfa 49.2 12 0.00026 33.4 2.0 26 375-400 265-290 (295)
104 PF12273 RCR: Chitin synthesis 46.9 16 0.00034 28.9 2.2 12 387-398 16-27 (130)
105 PTZ00370 STEVOR; Provisional 46.8 13 0.00028 33.3 1.8 29 374-402 260-288 (296)
106 PTZ00046 rifin; Provisional 45.3 21 0.00046 33.3 3.0 16 380-395 328-343 (358)
107 PF12191 stn_TNFRSF12A: Tumour 43.8 7.7 0.00017 29.9 0.0 23 378-400 89-111 (129)
108 TIGR01477 RIFIN variant surfac 43.4 23 0.0005 33.0 3.0 15 381-395 324-338 (353)
109 TIGR00864 PCC polycystin catio 43.4 13 0.00029 43.9 1.7 32 67-98 1-32 (2740)
110 PF08114 PMP1_2: ATPase proteo 41.9 11 0.00023 22.7 0.4 13 385-397 24-36 (43)
111 PF14979 TMEM52: Transmembrane 36.7 57 0.0012 26.0 3.8 31 368-398 20-50 (154)
112 PF14575 EphA2_TM: Ephrin type 34.6 50 0.0011 23.2 3.0 26 373-398 3-28 (75)
113 PF11770 GAPT: GRB2-binding ad 34.1 34 0.00074 27.4 2.2 14 384-397 23-36 (158)
114 PRK00523 hypothetical protein; 33.1 28 0.0006 24.1 1.4 27 373-399 8-34 (72)
115 smart00367 LRR_CC Leucine-rich 32.7 29 0.00062 18.3 1.2 11 14-24 2-12 (26)
116 PHA02947 S-S bond formation pa 32.6 48 0.0011 28.3 3.0 23 377-399 186-208 (215)
117 PHA02662 ORF131 putative membr 31.6 45 0.00098 28.6 2.7 22 379-400 196-217 (226)
118 PF05393 Hum_adeno_E3A: Human 30.8 51 0.0011 23.7 2.4 12 384-395 49-60 (94)
119 PRK01844 hypothetical protein; 30.6 31 0.00068 23.8 1.3 25 374-398 8-32 (72)
120 TIGR00847 ccoS cytochrome oxid 30.5 89 0.0019 20.1 3.3 24 371-394 6-29 (51)
121 PF15102 TMEM154: TMEM154 prot 29.1 27 0.00058 28.0 0.9 30 370-399 58-87 (146)
122 PF03597 CcoS: Cytochrome oxid 27.3 99 0.0022 19.2 3.0 24 371-394 5-28 (45)
123 KOG4671 Brain cell membrane pr 26.9 1.7E+02 0.0038 24.4 5.1 7 341-347 54-60 (201)
124 PF05454 DAG1: Dystroglycan (D 26.7 21 0.00046 32.4 0.0 19 384-402 162-180 (290)
125 PHA02955 hypothetical protein; 26.6 60 0.0013 27.8 2.6 16 385-400 194-209 (213)
126 PF11980 DUF3481: Domain of un 26.0 63 0.0014 23.0 2.1 15 367-381 15-29 (87)
127 PHA03099 epidermal growth fact 24.6 1.2E+02 0.0026 23.7 3.6 13 385-397 116-128 (139)
128 PF11857 DUF3377: Domain of un 22.9 87 0.0019 21.8 2.4 9 400-408 65-73 (74)
129 PF02009 Rifin_STEVOR: Rifin/s 22.3 49 0.0011 30.3 1.4 31 370-400 255-285 (299)
130 KOG4242 Predicted myosin-I-bin 22.2 71 0.0015 31.2 2.5 67 85-153 165-234 (553)
131 PRK14762 membrane protein; Pro 22.0 1.4E+02 0.0031 15.8 2.7 17 371-387 6-22 (27)
132 PF15179 Myc_target_1: Myc tar 21.1 1.2E+02 0.0026 25.3 3.2 22 369-390 25-46 (197)
133 PF01102 Glycophorin_A: Glycop 20.6 1.2E+02 0.0025 23.7 3.0 25 366-391 66-90 (122)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-38 Score=339.05 Aligned_cols=336 Identities=34% Similarity=0.484 Sum_probs=232.3
Q ss_pred ceecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChh
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNA 80 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 80 (420)
++|.+|..|+++++|+.|++++|.+++..|..+.++++|+.|++++|.+.+.+|..+ .+++|++|++++|.+++..|..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 456777777777888888888887777777777777777777777777777777777 7777777777777777777777
Q ss_pred hhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccc---cccc
Q 038779 81 LFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCL---TSVS 157 (420)
Q Consensus 81 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~ 157 (420)
+..+++|+.|++++|.+++..|..++.+++|+.|++++|++++..|..+..+++|+.|++++|.+.+..|..+ .+++
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 7777777777777777776777777777777777777777766666666666666666666666655555433 2334
Q ss_pred ccccCCcccccccccchhhccCC-------------------CCCcccCcccccc-cCCCCCCCCC--CcceEEEEeccC
Q 038779 158 FWSQGKNDLYGIELNLEWDLGAG-------------------AAGTYDNSNLEMY-LSNGAHGPPG--QHVEVEFVTKNR 215 (420)
Q Consensus 158 ~l~~~~n~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~ 215 (420)
.+.+.+|.+.......+...... ....+..+.+..+ ..+..+.... ....+.......
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 44445554433211111100000 0001111111111 0011111000 011111111111
Q ss_pred --ccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccc
Q 038779 216 --NELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRL 293 (420)
Q Consensus 216 --~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 293 (420)
........+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..|.++++|+.|+|++|++++.+|..+
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 111123347889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCcCCcCCC
Q 038779 294 TELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCGSI 337 (420)
Q Consensus 294 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 337 (420)
..++.|+++++++|++.+.+|..+++..+....+.||+.+|+..
T Consensus 568 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999998889999999999999999754
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-36 Score=320.39 Aligned_cols=336 Identities=32% Similarity=0.477 Sum_probs=243.6
Q ss_pred ceecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChh
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNA 80 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 80 (420)
++|.+|..++++++|++|+|++|++++.+|..++++++|+.|++++|.+.+..|..+ ++++|++|++++|++++..|..
T Consensus 200 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 279 (968)
T PLN00113 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279 (968)
T ss_pred CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh
Confidence 567788888888888888888888888888888888888888888888888888888 8888888888888888778888
Q ss_pred hhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccc---cccc
Q 038779 81 LFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCL---TSVS 157 (420)
Q Consensus 81 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~ 157 (420)
+.++++|++|+|++|.+.+..|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+ .+++
T Consensus 280 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 359 (968)
T PLN00113 280 IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359 (968)
T ss_pred HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence 8888888888888888887788888888888888888888887777778888888888888888777777644 3455
Q ss_pred ccccCCcccccccccchhhccC-------------------CCCCcccCcccccc-cCCCCCCC----------------
Q 038779 158 FWSQGKNDLYGIELNLEWDLGA-------------------GAAGTYDNSNLEMY-LSNGAHGP---------------- 201 (420)
Q Consensus 158 ~l~~~~n~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~-~~~~~~~~---------------- 201 (420)
.+++..|++............. .....+..+.+..+ ..+..+..
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 5666666654322111100000 00001111111111 00000000
Q ss_pred -----------CCCcceEEEEeccCccc-cCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhh
Q 038779 202 -----------PGQHVEVEFVTKNRNEL-YNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESF 269 (420)
Q Consensus 202 -----------~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 269 (420)
......+.......... -......+|+.|++++|++++..|..+..+++|+.|+|++|++.+.+|..+
T Consensus 440 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred ccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHH
Confidence 00000000000000000 001124678999999999999999999999999999999999999999999
Q ss_pred hccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CCcCCccCcccccCCcCCcCCC
Q 038779 270 FNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KGQFAIFDESNYRGNIHLCGSI 337 (420)
Q Consensus 270 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 337 (420)
.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|. ...+..++.+++.+|+..+.-|
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999999999999999999999999999999999999998887 4667889999999999876433
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-35 Score=270.70 Aligned_cols=322 Identities=21% Similarity=0.227 Sum_probs=233.4
Q ss_pred ccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCc
Q 038779 10 IGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELL 88 (420)
Q Consensus 10 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 88 (420)
|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+.+....+ .++.|+.|||+.|.|+.+...+|..-.+++
T Consensus 98 f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred HhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 456666777777777766 556554455567777777777776666666 778888888888888877777777778888
Q ss_pred EEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccc---cCCCcccccccccccCCcc
Q 038779 89 TLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFN---GSIPSCLTSVSFWSQGKND 165 (420)
Q Consensus 89 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~p~~l~~l~~l~~~~n~ 165 (420)
+|+|++|+|+.+..+.|.++.+|.+|.|+.|+++...+.+|.++++|+.|||..|++. +....++.+++.+.+..|.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~ 256 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND 256 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcC
Confidence 8888888888888888888888888888888888777788888888888888888875 3345667778888888888
Q ss_pred cccccccchhhccCCCCCcccCcccccccCCCCCCCCC-CcceEEEEeccCccccCCccccCCCeEEccCCccccCCCcc
Q 038779 166 LYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPG-QHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVE 244 (420)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 244 (420)
+..+....|+.........++...+..+..+.+.+... ..+.++.........-..+..++|+.|+|+.|+|+...+..
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence 88888888887766666666666666666666555322 12222222222222222344677888888888888777778
Q ss_pred ccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCc---cccCCCCCCEEEcccCcCcccCCC-CCcCC
Q 038779 245 IGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSP---RLTELNFLSNFNVSYNNLSGLVPD-KGQFA 320 (420)
Q Consensus 245 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~ 320 (420)
|..|+.|++|+|++|+++..-...|.++.+|+.|||++|.|+..+.+ .|.+|++|+.|++.+|++....-. ...+.
T Consensus 337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~ 416 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE 416 (873)
T ss_pred HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCc
Confidence 88888888888888888877777788888888888888888755443 477788888888888888754432 35677
Q ss_pred ccCcccccCCcC
Q 038779 321 IFDESNYRGNIH 332 (420)
Q Consensus 321 ~l~~~~~~~n~~ 332 (420)
.++.+++.+|+.
T Consensus 417 ~LE~LdL~~Nai 428 (873)
T KOG4194|consen 417 ALEHLDLGDNAI 428 (873)
T ss_pred ccceecCCCCcc
Confidence 788888888875
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=7.6e-34 Score=263.11 Aligned_cols=348 Identities=18% Similarity=0.163 Sum_probs=232.9
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.||...+...+|+.|+|.+|.|+.+..+.++-++.|+.||||.|.|+.+....| .-.++++|+|++|+|+....+.|.+
T Consensus 116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 116 RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc
Confidence 467666666678888888887777777777777777777777777776666666 5567777777777777777777777
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCC---Ccccccccccc
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSI---PSCLTSVSFWS 160 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~l~ 160 (420)
+.+|.+|.|+.|+|+...+..|..+++|+.|+|..|+|.-..--+|.++++|+.|.|..|.+...- .-++.+++.|.
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLN 275 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceee
Confidence 777777777777777666666777777777777777766333445556666666666665554211 11233444555
Q ss_pred cCCcccccccccchhhccCCCCCcccCcccccccCCCC-CCCCCCcceEEEEeccCccccCCccccCCCeEEccCCcccc
Q 038779 161 QGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGA-HGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTG 239 (420)
Q Consensus 161 ~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 239 (420)
+..|++........++........+....+.......+ ....-..+++..........-.+..+..|++|.|++|.+..
T Consensus 276 L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred cccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 55555554444433333222222222222222111111 00000111222222222222333448899999999999998
Q ss_pred CCCccccCccCCCEEecCCcccccccch---hhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCC
Q 038779 240 GIPVEIGELQNVRSLNLSHNYLSGSIPE---SFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDK 316 (420)
Q Consensus 240 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 316 (420)
.....|..+++|++|||++|.+++.+.+ .|.+|++|+.|++.+|+|..+...+|.+++.|++|||.+|.+...-|..
T Consensus 356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence 8888999999999999999999977654 5889999999999999999888889999999999999999999888775
Q ss_pred CcCCccCcccccCCcCCcCCCCC----------------CCCCCcccccccC
Q 038779 317 GQFAIFDESNYRGNIHLCGSIIN----------------KSCNSAEEILATT 352 (420)
Q Consensus 317 ~~~~~l~~~~~~~n~~~c~~~~~----------------~~C~~~~~~~~~~ 352 (420)
..-..++++-+..-.++|++... ..|..|+...+..
T Consensus 436 Fe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~ 487 (873)
T KOG4194|consen 436 FEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQS 487 (873)
T ss_pred cccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccce
Confidence 33337778888888899976533 4699999776654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.5e-29 Score=236.50 Aligned_cols=279 Identities=25% Similarity=0.322 Sum_probs=227.5
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.||.++..+..|++||||+|+++ +.|..+...+++-.|+||+|+|..++...| ++..|-.|+||+|++. .+|.....
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred CCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence 48999999999999999999999 789999999999999999999997666666 9999999999999998 78888999
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEccccccc-ccCCccccCCCCCcEEeCcCCccccCCCccccc---cccc
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQ-GPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTS---VSFW 159 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~---l~~l 159 (420)
+..|++|+|++|.+.-.--..+..+++|+.|.+++.+=+ ..+|.++..+.+|..+|++.|.+. .+|+++.+ +..|
T Consensus 172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL 250 (1255)
T ss_pred HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence 999999999999986333334556778888888876543 357888999999999999999997 88887554 4566
Q ss_pred ccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCcccc
Q 038779 160 SQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTG 239 (420)
Q Consensus 160 ~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 239 (420)
.+++|++..+..... ...+|++|+||.|+++
T Consensus 251 NLS~N~iteL~~~~~------------------------------------------------~W~~lEtLNlSrNQLt- 281 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEG------------------------------------------------EWENLETLNLSRNQLT- 281 (1255)
T ss_pred ccCcCceeeeeccHH------------------------------------------------HHhhhhhhccccchhc-
Confidence 667777665433221 1467888888888888
Q ss_pred CCCccccCccCCCEEecCCcccc-cccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCc
Q 038779 240 GIPVEIGELQNVRSLNLSHNYLS-GSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQ 318 (420)
Q Consensus 240 ~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 318 (420)
..|+.+..|+.|+.|.+.+|+++ ..+|+.++.+.+|+.+..++|.+. ..|+.+..+.+|+.|.|+.|++-..+.....
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHl 360 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHL 360 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhh
Confidence 78888888888888888888875 347888888888888888888887 8888888888888888888888877666777
Q ss_pred CCccCcccccCCcCCcCC
Q 038779 319 FAIFDESNYRGNIHLCGS 336 (420)
Q Consensus 319 ~~~l~~~~~~~n~~~c~~ 336 (420)
++.+..+++..||.+--+
T Consensus 361 L~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 361 LPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cCCcceeeccCCcCccCC
Confidence 788888888888877633
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.4e-29 Score=236.74 Aligned_cols=297 Identities=24% Similarity=0.339 Sum_probs=161.5
Q ss_pred ecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccc-cCChhh
Q 038779 4 GHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNG-PIPNAL 81 (420)
Q Consensus 4 g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~-~~~~~~ 81 (420)
|..|.+...|++++.|.|....+. .+|+.++.+.+|+.|.+++|++.. +.+.+ .++.|+.+.+..|++.. -+|..+
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchh
Confidence 345555555555666655555555 455555555555555555555552 22333 55555555555555421 234445
Q ss_pred hCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCc---ccccccc
Q 038779 82 FRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPS---CLTSVSF 158 (420)
Q Consensus 82 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~ 158 (420)
..+..|++||||+|+++ ..|..+..-+++-.|+|++|+|..+...-|.++..|-.|||++|++. .+|. .+.++..
T Consensus 100 F~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT 177 (1255)
T ss_pred cccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence 55555555555555555 44555555555555555555555443344455555555555555554 3332 2334445
Q ss_pred cccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEec-cCccccCCccccCCCeEEccCCcc
Q 038779 159 WSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTK-NRNELYNGSNLDYMSGLDLSCNEL 237 (420)
Q Consensus 159 l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l 237 (420)
|.+++|.+....+...-.........++. ... ..........+.+|..+|+|.|++
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~-----------------------TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSN-----------------------TQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhccc-----------------------ccchhhcCCCchhhhhhhhhccccccCC
Confidence 55555544333222111100000000000 000 000011122366777777888877
Q ss_pred ccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCc--ccCCC
Q 038779 238 TGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLS--GLVPD 315 (420)
Q Consensus 238 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~ 315 (420)
. ..|+.+..+++|+.|+||+|+|+ +..-......+|++|++|+|+++ ..|+.+..+++|+.|.+.+|+++ |++..
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 7 77777777777888888888777 45555666677777777777777 67777777777777777777653 44444
Q ss_pred CCcCCccCcccccCC
Q 038779 316 KGQFAIFDESNYRGN 330 (420)
Q Consensus 316 ~~~~~~l~~~~~~~n 330 (420)
.+.+..++.....+|
T Consensus 312 IGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANN 326 (1255)
T ss_pred hhhhhhhHHHHhhcc
Confidence 566666666555555
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=2.5e-29 Score=223.32 Aligned_cols=304 Identities=20% Similarity=0.131 Sum_probs=225.5
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcC-CcccccCChhhh
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRK-NGFNGPIPNALF 82 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~-n~l~~~~~~~~~ 82 (420)
+||..+. +.-..++|..|.|+.+.|++|+.+++|+.||||+|.|+.+-|++| ++++|..|-+.+ |+|+....++|.
T Consensus 60 eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 60 EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 3666654 356789999999999999999999999999999999999999999 999988886665 999988889999
Q ss_pred CCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccC------------CC
Q 038779 83 RSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGS------------IP 150 (420)
Q Consensus 83 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~p 150 (420)
++..|+.|.+.-|++.-+..++|..+++|..|.+.+|.+..+...+|..+..++.+.+..|.+... .|
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ 217 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP 217 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhch
Confidence 999999999999999988889999999999999999999966667999999999999999985310 00
Q ss_pred ---cccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCC
Q 038779 151 ---SCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYM 227 (420)
Q Consensus 151 ---~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 227 (420)
.++......++.++++.......+.-. ...+.+........+...|.. -+..+++|
T Consensus 218 ietsgarc~~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~~cP~~------------------cf~~L~~L 276 (498)
T KOG4237|consen 218 IETSGARCVSPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDSICPAK------------------CFKKLPNL 276 (498)
T ss_pred hhcccceecchHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCCcChHH------------------HHhhcccc
Confidence 111111111111111111111100000 000000000001111111110 03448999
Q ss_pred CeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccC
Q 038779 228 SGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYN 307 (420)
Q Consensus 228 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 307 (420)
++|+|++|+|+++.+.+|.++..+++|.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|+|-.|
T Consensus 277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 99999999999999999999999999999999999777778999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCcCCccCcccccCCc
Q 038779 308 NLSGLVPDKGQFAIFDESNYRGNI 331 (420)
Q Consensus 308 ~l~~~~p~~~~~~~l~~~~~~~n~ 331 (420)
+|.|.|.-.-.-.+++.-...|||
T Consensus 357 p~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 357 PFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred cccCccchHHHHHHHhhCCCCCCC
Confidence 999998432222233333345555
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=9.8e-30 Score=226.32 Aligned_cols=319 Identities=26% Similarity=0.358 Sum_probs=182.6
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCC
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
+|..++++.++..|++.+|.++...| ..-.|+.|+.||...|.++ .+|..+ ++.+|.-|+++.|++. .+| .|.++
T Consensus 152 lp~~~~~~~~l~~l~~~~n~l~~l~~-~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gc 227 (565)
T KOG0472|consen 152 LPEDMVNLSKLSKLDLEGNKLKALPE-NHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGC 227 (565)
T ss_pred CchHHHHHHHHHHhhccccchhhCCH-HHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCcc
Confidence 44444444444444444444442222 2222555555555555444 233334 5555555566666665 444 46666
Q ss_pred CCCcEEecccCcccccCCcC-CCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccc--ccccc
Q 038779 85 SELLTLDLTDNHFSGRIPHQ-INTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSV--SFWSQ 161 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~l~~ 161 (420)
..|++++++.|.|. .+|.. ..+++.+..|||.+|+++ ..|+.+.-+++|++||+++|.++ .+|..++++ +.|.+
T Consensus 228 s~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~l 304 (565)
T KOG0472|consen 228 SLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLAL 304 (565)
T ss_pred HHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccceeeehhh
Confidence 66666666666665 33333 346777777888888877 67777777788888888888876 556555554 35555
Q ss_pred CCcccccccccchhhccCCCCCc-----------------------------------------ccCcccccccCCCCCC
Q 038779 162 GKNDLYGIELNLEWDLGAGAAGT-----------------------------------------YDNSNLEMYLSNGAHG 200 (420)
Q Consensus 162 ~~n~l~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~ 200 (420)
.+|.+..+.............++ ++...++.+++..+..
T Consensus 305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea 384 (565)
T KOG0472|consen 305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEA 384 (565)
T ss_pred cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHH
Confidence 66654433221100000000000 0000111111111111
Q ss_pred CCCCcceEEEEeccCccccC--------------------------CccccCCCeEEccCCccccCCCccccCccCCCEE
Q 038779 201 PPGQHVEVEFVTKNRNELYN--------------------------GSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSL 254 (420)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 254 (420)
............++...... ...+++|+.|+|++|-+. .+|.+++.+..|+.|
T Consensus 385 ~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~L 463 (565)
T KOG0472|consen 385 AKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTL 463 (565)
T ss_pred hhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhhee
Confidence 00000111111111111110 011566777777777766 666667777777777
Q ss_pred ecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCcCC
Q 038779 255 NLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHL 333 (420)
Q Consensus 255 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 333 (420)
|+++|++. .+|..+-.+..++.+-.++|++....++.+..|.+|++|||.+|.+...+|..+.++.++.+.+.|||+.
T Consensus 464 nlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 464 NLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 77777777 6676666666666666677777766667789999999999999999999999999999999999999975
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.4e-27 Score=212.59 Aligned_cols=262 Identities=24% Similarity=0.347 Sum_probs=182.6
Q ss_pred CCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecc
Q 038779 15 VLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLT 93 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 93 (420)
-+..|++++|.++ .+.+.+.++..|.+|++.+|++.. .|.++ .+..++.++.++|++. .+|..+..+..|..++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4666677777666 344455666677777777776663 33334 6666666677777766 566666666677777777
Q ss_pred cCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCc--ccccccccccCCcccccccc
Q 038779 94 DNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPS--CLTSVSFWSQGKNDLYGIEL 171 (420)
Q Consensus 94 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~l~~~~n~l~~~~~ 171 (420)
+|.+. ..|+.++.+..|+.++..+|+++ ..|+.+..+.+|..+++.+|.+....|. .+..++.++..+|-+..++.
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~ 200 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPP 200 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCCh
Confidence 77766 45556666666677776677666 4556666666677777777766633332 13334444444444333322
Q ss_pred cchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCC
Q 038779 172 NLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNV 251 (420)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 251 (420)
.. ..+.+|..|+|..|+|. ..| +|.++..|
T Consensus 201 ~l------------------------------------------------g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L 230 (565)
T KOG0472|consen 201 EL------------------------------------------------GGLESLELLYLRRNKIR-FLP-EFPGCSLL 230 (565)
T ss_pred hh------------------------------------------------cchhhhHHHHhhhcccc-cCC-CCCccHHH
Confidence 11 22677888999999998 666 78899999
Q ss_pred CEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCc
Q 038779 252 RSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNI 331 (420)
Q Consensus 252 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~ 331 (420)
++|.++.|+|.-...+...+++++..|||++|+++ ..|+.+.-+.+|.+||+|+|.+++.+++.+.+ .++.+.+.|||
T Consensus 231 ~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 231 KELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 99999999998444444568999999999999998 78888888899999999999999998888877 88888999998
Q ss_pred CC
Q 038779 332 HL 333 (420)
Q Consensus 332 ~~ 333 (420)
..
T Consensus 309 lr 310 (565)
T KOG0472|consen 309 LR 310 (565)
T ss_pred hH
Confidence 53
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=7.9e-26 Score=201.15 Aligned_cols=301 Identities=21% Similarity=0.206 Sum_probs=210.6
Q ss_pred EEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecc-cCc
Q 038779 19 MIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLT-DNH 96 (420)
Q Consensus 19 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~ 96 (420)
.+-++-.++ ++|..+. +....++|..|+|+.++|++| .+++|+.|||++|.|+.+-|++|.++.+|..|-+- +|+
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 344445555 5665554 367889999999999999999 99999999999999999999999999988776555 599
Q ss_pred ccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCc----ccccccccccCCccccccccc
Q 038779 97 FSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPS----CLTSVSFWSQGKNDLYGIELN 172 (420)
Q Consensus 97 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~l~~~~n~l~~~~~~ 172 (420)
|+.+..++|.++..|+.|.+.-|++.....++|..+++|..|.+.+|.+. .++. .+..++.+.+..|.+.....-
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccccc
Confidence 99888889999999999999999999999999999999999999999887 3433 334444555544442221100
Q ss_pred chhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCcc---ccCCC-eEEccCCccccCCCc-cccC
Q 038779 173 LEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSN---LDYMS-GLDLSCNELTGGIPV-EIGE 247 (420)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~L~-~L~Ls~n~l~~~~~~-~~~~ 247 (420)
. |..... .... .+ .+++.. ........+.....-.... ...+. .+...++ ..+..|. .|..
T Consensus 207 ~-wla~~~-----a~~~-ie--tsgarc----~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 207 P-WLADDL-----AMNP-IE--TSGARC----VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PDSICPAKCFKK 272 (498)
T ss_pred c-hhhhHH-----hhch-hh--ccccee----cchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cCCcChHHHHhh
Confidence 0 000000 0000 00 000000 0000000000000000000 11111 1222222 2334443 5899
Q ss_pred ccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CCcCCccCccc
Q 038779 248 LQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KGQFAIFDESN 326 (420)
Q Consensus 248 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~l~~~~ 326 (420)
|++|+.|+|++|+++++-+.+|.++..++.|.|..|+|.......|.++..|++|+|.+|++++..|. ...+..+.+++
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 99999999999999999999999999999999999999977777899999999999999999999987 45666788899
Q ss_pred ccCCcCCcCCC
Q 038779 327 YRGNIHLCGSI 337 (420)
Q Consensus 327 ~~~n~~~c~~~ 337 (420)
+.+|||.|.+.
T Consensus 353 l~~Np~~CnC~ 363 (498)
T KOG4237|consen 353 LLSNPFNCNCR 363 (498)
T ss_pred hccCcccCccc
Confidence 99999999543
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=3.1e-22 Score=200.55 Aligned_cols=249 Identities=22% Similarity=0.221 Sum_probs=158.1
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
.||+.+. ++|+.|++++|+++ .+|. ..++|++|++++|+++.+ |.. .++|+.|++++|.++ .+|..+
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsL-P~l--p~sL~~L~Ls~N~L~-~Lp~lp--- 281 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PVL--PPGLLELSIFSNPLT-HLPALP--- 281 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcc-cCc--ccccceeeccCCchh-hhhhch---
Confidence 4666664 36777777777777 3553 246777777777777743 332 356677777777776 333322
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCc
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKN 164 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n 164 (420)
.+|+.|++++|+++ .+|. .+++|+.|+|++|++++ +|.. ..+|+.|++++|.+. .+|....+|..|++++|
T Consensus 282 ~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~lp~~Lq~LdLS~N 352 (788)
T PRK15387 282 SGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTLPSGLQELSVSDN 352 (788)
T ss_pred hhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cccccccccceEecCCC
Confidence 45667777777776 3343 24667777777777774 3332 234666677777765 45544456667777777
Q ss_pred ccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCcc
Q 038779 165 DLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVE 244 (420)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 244 (420)
++..++... ..+..+.+..+ ....+. ..+.+|+.|++++|.+++ +|..
T Consensus 353 ~Ls~LP~lp---------~~L~~L~Ls~N---------------------~L~~LP-~l~~~L~~LdLs~N~Lt~-LP~l 400 (788)
T PRK15387 353 QLASLPTLP---------SELYKLWAYNN---------------------RLTSLP-ALPSGLKELIVSGNRLTS-LPVL 400 (788)
T ss_pred ccCCCCCCC---------cccceehhhcc---------------------ccccCc-ccccccceEEecCCcccC-CCCc
Confidence 666543210 00001111111 000000 114578999999999984 5543
Q ss_pred ccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC
Q 038779 245 IGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 245 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 315 (420)
.++|+.|++++|+++ .+|..+ .+|+.|++++|+|+ .+|..+..++.|+.+++++|++++..+.
T Consensus 401 ---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 401 ---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 367999999999998 466543 46788999999998 6788899999999999999999877644
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=7.3e-21 Score=190.73 Aligned_cols=259 Identities=22% Similarity=0.203 Sum_probs=188.9
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecc
Q 038779 14 PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLT 93 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 93 (420)
..-..|+++++.++ .+|+.+. ++|+.|++++|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~--lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC--CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 34678999999999 6888775 489999999999996 443 2588999999999999 45542 3689999999
Q ss_pred cCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccc
Q 038779 94 DNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNL 173 (420)
Q Consensus 94 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~ 173 (420)
+|.++ .+|.. .++|+.|++++|+++. +|. ..++|+.|++++|++. .+|.....+..|.+.+|.+..++...
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp 341 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLP 341 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCCcccccccccccCccccccccc
Confidence 99998 45543 3678899999999994 454 3578999999999998 46666667888888888876544210
Q ss_pred hhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCE
Q 038779 174 EWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRS 253 (420)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 253 (420)
..+..+++..+....+| ....+|+.|++++|.++ .+|.. ..+|+.
T Consensus 342 ---------~~Lq~LdLS~N~Ls~LP----------------------~lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~ 386 (788)
T PRK15387 342 ---------SGLQELSVSDNQLASLP----------------------TLPSELYKLWAYNNRLT-SLPAL---PSGLKE 386 (788)
T ss_pred ---------cccceEecCCCccCCCC----------------------CCCcccceehhhccccc-cCccc---ccccce
Confidence 01111111111110111 11456788888888888 45543 357899
Q ss_pred EecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCcCC
Q 038779 254 LNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHL 333 (420)
Q Consensus 254 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 333 (420)
|++++|+++ .+|.. .++|+.|++++|+++. +|... ..|+.|++++|+++..+.....+..+..+++.+|++.
T Consensus 387 LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 387 LIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred EEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 999999998 45643 3679999999999984 56433 4678899999999865444567888899999999975
Q ss_pred c
Q 038779 334 C 334 (420)
Q Consensus 334 c 334 (420)
.
T Consensus 459 ~ 459 (788)
T PRK15387 459 E 459 (788)
T ss_pred c
Confidence 4
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=3.1e-21 Score=194.51 Aligned_cols=245 Identities=22% Similarity=0.298 Sum_probs=144.6
Q ss_pred CCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEeccc
Q 038779 15 VLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTD 94 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 94 (420)
+...|+++++.++ .+|..+. ++|+.|+|++|+++.+ |..+ .++|++|++++|+++ .+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsL-P~~l-~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSL-PENL-QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcC-Chhh-ccCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 4677888888887 4666553 4788888888888853 4333 247888888888887 4565543 3688888888
Q ss_pred CcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccc-ccccccccCCcccccccccc
Q 038779 95 NHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCL-TSVSFWSQGKNDLYGIELNL 173 (420)
Q Consensus 95 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~l~~~~n~l~~~~~~~ 173 (420)
|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+ .++..|.+.+|.+..++...
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l 323 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETL 323 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccc
Confidence 8887 5565543 47888888888887 4565443 47888888888887 344433 34666777777665443211
Q ss_pred hhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCE
Q 038779 174 EWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRS 253 (420)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 253 (420)
. ..+..+.+..+ ....+.....++|+.|++++|+++ .+|..+ .++|+.
T Consensus 324 ~--------~sL~~L~Ls~N---------------------~Lt~LP~~l~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~ 371 (754)
T PRK15370 324 P--------PGLKTLEAGEN---------------------ALTSLPASLPPELQVLDVSKNQIT-VLPETL--PPTITT 371 (754)
T ss_pred c--------ccceeccccCC---------------------ccccCChhhcCcccEEECCCCCCC-cCChhh--cCCcCE
Confidence 0 00000000000 000000011346666777777666 344443 246667
Q ss_pred EecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccc----cCCCCCCEEEcccCcCc
Q 038779 254 LNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRL----TELNFLSNFNVSYNNLS 310 (420)
Q Consensus 254 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~ 310 (420)
|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+ ..++.+..+++.+|+++
T Consensus 372 LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 372 LDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred EECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 777777666 3444443 25666667777666 334332 33456666677777665
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=4.6e-23 Score=201.33 Aligned_cols=314 Identities=23% Similarity=0.244 Sum_probs=172.5
Q ss_pred ceecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhh
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNAL 81 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 81 (420)
+.|.++.++.+++. .|||++|.+. .. .+.++.+|+.|....|++....- ..++|+.|+.++|.++...+. +
T Consensus 168 l~~~~~~~i~~l~~--~ldLr~N~~~-~~--dls~~~~l~~l~c~rn~ls~l~~---~g~~l~~L~a~~n~l~~~~~~-p 238 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTH--QLDLRYNEME-VL--DLSNLANLEVLHCERNQLSELEI---SGPSLTALYADHNPLTTLDVH-P 238 (1081)
T ss_pred cccchhcchhhhhe--eeecccchhh-hh--hhhhccchhhhhhhhcccceEEe---cCcchheeeeccCcceeeccc-c
Confidence 34567777777665 6888888877 22 23455555655555555543211 234445555555554422211 1
Q ss_pred hCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCC--ccccccccc
Q 038779 82 FRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIP--SCLTSVSFW 159 (420)
Q Consensus 82 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~l 159 (420)
--.+|+++++++|+++ .+|+++..+.+|+.++..+|+++ ..|..+..+.+|+.|+...|.+....| +.+..+..|
T Consensus 239 -~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 -VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred -ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeee
Confidence 1134555555555554 33455555555555555555553 334444444444444444444431111 123334444
Q ss_pred ccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCC---cceEEEEeccC---ccccCCccccCCCeEEcc
Q 038779 160 SQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQ---HVEVEFVTKNR---NELYNGSNLDYMSGLDLS 233 (420)
Q Consensus 160 ~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~l~~L~~L~Ls 233 (420)
++..|++...+...+.... . .+...+.+.+.....+.+.+. .+....+..+. ...-....+.+|+.|+|+
T Consensus 316 dL~~N~L~~lp~~~l~v~~-~---~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLN-A---SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eehhccccccchHHHhhhh-H---HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 4444444443331110000 0 000000000000000000000 00000000000 000112337889999999
Q ss_pred CCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccC
Q 038779 234 CNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLV 313 (420)
Q Consensus 234 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 313 (420)
+|++.......+.++..|++|+||+|+++ .+|..+..++.|++|...+|+|. ..| .+..++.|+.+|++.|+++...
T Consensus 392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence 99998555566889999999999999999 78899999999999999999998 777 7889999999999999998654
Q ss_pred -CCCCcCCccCcccccCCcCCc
Q 038779 314 -PDKGQFAIFDESNYRGNIHLC 334 (420)
Q Consensus 314 -p~~~~~~~l~~~~~~~n~~~c 334 (420)
|.....+.++.++++||.++-
T Consensus 469 l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred hhhhCCCcccceeeccCCcccc
Confidence 334445889999999999643
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=4.6e-20 Score=197.90 Aligned_cols=303 Identities=18% Similarity=0.176 Sum_probs=146.5
Q ss_pred CCccccCCC-CCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 6 IPSWIGNFP-VLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 6 ip~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
+|..|..++ +|+.|++.++.++ .+|..| ...+|+.|++++|++.. ++..+ .+++|+.|+|+++.....+| .+..
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~ 655 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSM 655 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCC-cccc
Confidence 444444432 3555555555554 344444 34556666666665553 33334 55566666665544322344 2555
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCC
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGK 163 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~ 163 (420)
+++|+.|+|++|.....+|..+..+++|+.|++++|..-..+|..+ ++++|+.|++++|.....+|....+++.|.+..
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE 734 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence 5666666666554434555556666666666666543332444433 555666666666554444555455555565555
Q ss_pred cccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCc
Q 038779 164 NDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPV 243 (420)
Q Consensus 164 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 243 (420)
|.+..++..... ..+..+.+............ ..........+++|+.|+|++|.....+|.
T Consensus 735 n~i~~lP~~~~l-------~~L~~L~l~~~~~~~l~~~~-----------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~ 796 (1153)
T PLN03210 735 TAIEEFPSNLRL-------ENLDELILCEMKSEKLWERV-----------QPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796 (1153)
T ss_pred Cccccccccccc-------cccccccccccchhhccccc-----------cccchhhhhccccchheeCCCCCCccccCh
Confidence 554433221100 00000000000000000000 000000001123455555555544444455
Q ss_pred cccCccCCCEEecCCcccccccchhh--------------------hccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 244 EIGELQNVRSLNLSHNYLSGSIPESF--------------------FNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 244 ~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
.++++++|+.|++++|...+.+|..+ ...++|+.|+|++|.++ .+|..+..+++|++|+
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLD 875 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEE
Confidence 55555555555555443222333222 01245667777777776 5677777888888888
Q ss_pred ccc-CcCcccCCCCCcCCccCcccccCCcC
Q 038779 304 VSY-NNLSGLVPDKGQFAIFDESNYRGNIH 332 (420)
Q Consensus 304 L~~-N~l~~~~p~~~~~~~l~~~~~~~n~~ 332 (420)
+++ |++.+..+....++.++.+++.+++.
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 887 56666555555666666666665543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=7.3e-21 Score=191.78 Aligned_cols=232 Identities=23% Similarity=0.364 Sum_probs=167.7
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
.+|..+. ++|+.|+|++|+++ .+|..+. ++|++|++++|+++. +|..+ .+.|+.|+|++|+++ .+|..+.
T Consensus 192 sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l-~~~L~~L~Ls~N~L~-~LP~~l~-- 261 (754)
T PRK15370 192 TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATL-PDTIQEMELSINRIT-ELPERLP-- 261 (754)
T ss_pred cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhh-hccccEEECcCCccC-cCChhHh--
Confidence 3666554 57999999999999 5676654 599999999999985 45555 246999999999998 5676664
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCc-ccccccccccCC
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPS-CLTSVSFWSQGK 163 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~l~~~~ 163 (420)
.+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.+.. +|. ...+|+.|.+.+
T Consensus 262 s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~ 334 (754)
T PRK15370 262 SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLPPGLKTLEAGE 334 (754)
T ss_pred CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccccccceeccccC
Confidence 58999999999998 5676653 589999999999995 454442 478999999999984 443 446788888888
Q ss_pred cccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCc
Q 038779 164 NDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPV 243 (420)
Q Consensus 164 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 243 (420)
|.+..++.... ..+..+.+..+ ..........++|+.|++++|+++ .+|.
T Consensus 335 N~Lt~LP~~l~--------~sL~~L~Ls~N---------------------~L~~LP~~lp~~L~~LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 335 NALTSLPASLP--------PELQVLDVSKN---------------------QITVLPETLPPTITTLDVSRNALT-NLPE 384 (754)
T ss_pred CccccCChhhc--------CcccEEECCCC---------------------CCCcCChhhcCCcCEEECCCCcCC-CCCH
Confidence 88776542110 11111111111 111111122468999999999999 5565
Q ss_pred cccCccCCCEEecCCcccccccchh----hhccCCCCEEeCCCCcCc
Q 038779 244 EIGELQNVRSLNLSHNYLSGSIPES----FFNLKMTESLDLSYNRLR 286 (420)
Q Consensus 244 ~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~ 286 (420)
.+. ..|+.|++++|++. .+|.. +..++.+..|++.+|.++
T Consensus 385 ~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 385 NLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 553 47999999999998 55554 345588999999999987
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2.7e-19 Score=191.98 Aligned_cols=292 Identities=19% Similarity=0.152 Sum_probs=193.8
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
.+|..| ...+|+.|++++|.+. .++..+..+++|+.|+|+++...+.+|....+++|++|++++|.....+|..+..+
T Consensus 603 ~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 603 CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhcc
Confidence 577777 4689999999999998 57778889999999999998766677753389999999999987666889999999
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcc--cccccccccC
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSC--LTSVSFWSQG 162 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~l~~~ 162 (420)
++|+.|++++|.--+.+|..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|.. +.++..|.+.
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILC 755 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccccccccccccccc
Confidence 999999999975444677665 7899999999998765566643 468999999999986 56653 3455555554
Q ss_pred Ccccccccccc--hhhccCCCCCcccCccccccc-CCCCCCCCCC---cceEEEEeccCcccc-CCccccCCCeEEccCC
Q 038779 163 KNDLYGIELNL--EWDLGAGAAGTYDNSNLEMYL-SNGAHGPPGQ---HVEVEFVTKNRNELY-NGSNLDYMSGLDLSCN 235 (420)
Q Consensus 163 ~n~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~n 235 (420)
.+....+.... ...........+..+.+..+. ...+|...+. ...+........... ....+++|+.|++++|
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGC 835 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCC
Confidence 32211000000 000000000111112221110 0001111000 111111110011111 1113677888888887
Q ss_pred ccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCC-cCcccCCccccCCCCCCEEEcccCc
Q 038779 236 ELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYN-RLRGRVSPRLTELNFLSNFNVSYNN 308 (420)
Q Consensus 236 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 308 (420)
..-...|.. ..+|+.|+|++|.++ .+|..+..+++|+.|++++| ++. .+|..+..+++|+.+++++|.
T Consensus 836 ~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 836 SRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred Ccccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 544344442 367999999999998 78999999999999999995 565 577778889999999999885
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.6e-21 Score=190.67 Aligned_cols=228 Identities=30% Similarity=0.422 Sum_probs=143.8
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC-
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR- 83 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~- 83 (420)
+|+|++.+.+|+.++..+|+++ .+|..+...++|+.|++.+|.++.+. ... +.+.|++|+|+.|++. ..|+.|..
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~L~-~lp~~~l~v 332 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNNLP-SLPDNFLAV 332 (1081)
T ss_pred chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC-Ccccccceeeeeeehhcccc-ccchHHHhh
Confidence 4555555555555555555554 45555555555555555555555322 223 4555666666666555 33333322
Q ss_pred CC-CCcEEecccCcccccCC-cCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcc-cccccccc
Q 038779 84 SS-ELLTLDLTDNHFSGRIP-HQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSC-LTSVSFWS 160 (420)
Q Consensus 84 l~-~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~l~ 160 (420)
+. .|+.|+.+.|.+. ..| ..=..++.|+.|++.+|.++...-..+.+.++|++|+|++|++. .+|+. +.+
T Consensus 333 ~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k----- 405 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK----- 405 (1081)
T ss_pred hhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhc-----
Confidence 22 2455555555554 222 11122455777777777777666566777777777777777775 44442 221
Q ss_pred cCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccC
Q 038779 161 QGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGG 240 (420)
Q Consensus 161 ~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 240 (420)
+..|+.|+||+|+++ .
T Consensus 406 ---------------------------------------------------------------le~LeeL~LSGNkL~-~ 421 (1081)
T KOG0618|consen 406 ---------------------------------------------------------------LEELEELNLSGNKLT-T 421 (1081)
T ss_pred ---------------------------------------------------------------hHHhHHHhcccchhh-h
Confidence 567888888888888 7
Q ss_pred CCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcC
Q 038779 241 IPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNL 309 (420)
Q Consensus 241 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 309 (420)
+|..+..++.|++|..-.|++. ..| .+..++.|+.+|++.|.++...-..-...++|++||+++|..
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 7788888888888888888888 667 688888888888888888755433333447888888888874
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=2e-21 Score=154.33 Aligned_cols=185 Identities=26% Similarity=0.455 Sum_probs=143.5
Q ss_pred cCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCC
Q 038779 53 NMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCEL 132 (420)
Q Consensus 53 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 132 (420)
.+|+.|++...+.|.+++|+++ ..|..+..+.+|++|++.+|+|. .+|..++.+++|+.|+++-|++. ..|..|+.+
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred hcccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCC
Confidence 4556667888888889999998 67778889999999999999997 77888999999999999999988 788899999
Q ss_pred CCCcEEeCcCCcccc-CCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEE
Q 038779 133 QKLGIMDLSHNRFNG-SIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFV 211 (420)
Q Consensus 133 ~~L~~L~L~~N~l~~-~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (420)
+.|+.|||..|.+.. .+|..|..
T Consensus 102 p~levldltynnl~e~~lpgnff~-------------------------------------------------------- 125 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFY-------------------------------------------------------- 125 (264)
T ss_pred chhhhhhccccccccccCCcchhH--------------------------------------------------------
Confidence 999999999988762 23333322
Q ss_pred eccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCc
Q 038779 212 TKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSP 291 (420)
Q Consensus 212 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 291 (420)
+..|+.|+|++|.++ .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|++.+|+++ .+|.
T Consensus 126 ------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 126 ------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPP 190 (264)
T ss_pred ------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecCh
Confidence 566778888999888 77888888999999999888888 68888888888888888888888 4454
Q ss_pred cccCCCC---CCEEEcccCcCcc
Q 038779 292 RLTELNF---LSNFNVSYNNLSG 311 (420)
Q Consensus 292 ~~~~l~~---L~~L~L~~N~l~~ 311 (420)
.++.+.. =+.+.+.+|+|-.
T Consensus 191 el~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 191 ELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred hhhhhhhhhhHHHHhhhhCCCCC
Confidence 4544321 2234444555533
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=7.4e-21 Score=177.66 Aligned_cols=263 Identities=19% Similarity=0.167 Sum_probs=172.7
Q ss_pred CCccccCCCCCCEEEcccCccccc----CChhhhcCCCCCEEEccCCcCcc------cCCcCc-CCCCCcEEECcCCccc
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGN----IPPELSKFGGPLILDVSENCLSG------NMPSSL-NLSSLKHLYLRKNGFN 74 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~i~~------~~~~~~-~l~~L~~L~L~~n~l~ 74 (420)
.+..+..++.|+.|+++++.++.. ++..+...++++.|+++++.+.+ .++..+ .+++|+.|++++|.+.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 344455667788888888887532 44555667778888888887762 223344 6778888888888887
Q ss_pred ccCChhhhCCCC---CcEEecccCcccc----cCCcCCCCC-CCCcEEEccccccccc----CCccccCCCCCcEEeCcC
Q 038779 75 GPIPNALFRSSE---LLTLDLTDNHFSG----RIPHQINTL-SNLRVLLLRGNYLQGP----IPNQLCELQKLGIMDLSH 142 (420)
Q Consensus 75 ~~~~~~~~~l~~---L~~L~L~~N~l~~----~~p~~~~~l-~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~ 142 (420)
+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 656666665555 8888888888762 222344555 7888888888888732 234566677888888888
Q ss_pred CccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCc
Q 038779 143 NRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGS 222 (420)
Q Consensus 143 N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (420)
|.+.+.....+.. .+ .
T Consensus 175 n~l~~~~~~~l~~--~l--------------------------------------------------------------~ 190 (319)
T cd00116 175 NGIGDAGIRALAE--GL--------------------------------------------------------------K 190 (319)
T ss_pred CCCchHHHHHHHH--HH--------------------------------------------------------------H
Confidence 8876421111100 00 0
Q ss_pred cccCCCeEEccCCccccCC----CccccCccCCCEEecCCcccccccchhhhc-----cCCCCEEeCCCCcCcc----cC
Q 038779 223 NLDYMSGLDLSCNELTGGI----PVEIGELQNVRSLNLSHNYLSGSIPESFFN-----LKMTESLDLSYNRLRG----RV 289 (420)
Q Consensus 223 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~ 289 (420)
..++|+.|++++|.+++.. ...+..+++|++|++++|.+++.....+.. .+.|++|++++|.++. ..
T Consensus 191 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 270 (319)
T cd00116 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL 270 (319)
T ss_pred hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHH
Confidence 1457888999998886432 334566788999999999887533333322 3789999999998862 23
Q ss_pred CccccCCCCCCEEEcccCcCcccCCC-----CCcC-CccCcccccCCcC
Q 038779 290 SPRLTELNFLSNFNVSYNNLSGLVPD-----KGQF-AIFDESNYRGNIH 332 (420)
Q Consensus 290 ~~~~~~l~~L~~L~L~~N~l~~~~p~-----~~~~-~~l~~~~~~~n~~ 332 (420)
...+..+++|+++++++|+++..-.. ...+ ..++.+++.+|||
T Consensus 271 ~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 271 AEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 34456668899999999988744211 1222 4566677777764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=1.5e-21 Score=155.09 Aligned_cols=181 Identities=27% Similarity=0.412 Sum_probs=158.1
Q ss_pred hhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccc
Q 038779 81 LFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWS 160 (420)
Q Consensus 81 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~ 160 (420)
+..+.+.+.|-|++|+++ .+|..++.+.+|+.|++.+|+++ ..|.+++.+++|+.|+++-|++. ..|.+|++
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs----- 100 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS----- 100 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-----
Confidence 446678889999999998 67778999999999999999999 78999999999999999999997 88888876
Q ss_pred cCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCcccc-
Q 038779 161 QGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTG- 239 (420)
Q Consensus 161 ~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~- 239 (420)
++.|++|||.+|++..
T Consensus 101 ---------------------------------------------------------------~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 101 ---------------------------------------------------------------FPALEVLDLTYNNLNEN 117 (264)
T ss_pred ---------------------------------------------------------------Cchhhhhhccccccccc
Confidence 6778999999999875
Q ss_pred CCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcC
Q 038779 240 GIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQF 319 (420)
Q Consensus 240 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 319 (420)
..|..|..+..|+.|+|+.|.+. .+|..++++++|+.|.+.+|.+- ..|..++.+++|+.|.+.+|+++-.+|+.+.+
T Consensus 118 ~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 118 SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 57888889999999999999999 88999999999999999999987 78899999999999999999999999886554
Q ss_pred Ccc---CcccccCCcCCc
Q 038779 320 AIF---DESNYRGNIHLC 334 (420)
Q Consensus 320 ~~l---~~~~~~~n~~~c 334 (420)
.-. .....+.|||.-
T Consensus 196 ~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 196 DLVGNKQVMRMEENPWVN 213 (264)
T ss_pred hhhhhHHHHhhhhCCCCC
Confidence 422 234456677653
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=5.3e-20 Score=171.87 Aligned_cols=252 Identities=23% Similarity=0.232 Sum_probs=182.5
Q ss_pred EEEcccCccc-ccCChhhhcCCCCCEEEccCCcCccc----CCcCc-CCCCCcEEECcCCcccc------cCChhhhCCC
Q 038779 18 VMIMSKNRLE-GNIPPELSKFGGPLILDVSENCLSGN----MPSSL-NLSSLKHLYLRKNGFNG------PIPNALFRSS 85 (420)
Q Consensus 18 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~i~~~----~~~~~-~l~~L~~L~L~~n~l~~------~~~~~~~~l~ 85 (420)
.|+|..+.++ ......+..+.+|+.|+++++.++.. ++..+ ..++|++++++++.+.+ ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5788888887 44566677888999999999998543 33344 67789999999998762 3345677889
Q ss_pred CCcEEecccCcccccCCcCCCCCCC---CcEEEcccccccc----cCCccccCC-CCCcEEeCcCCccccCCCccccccc
Q 038779 86 ELLTLDLTDNHFSGRIPHQINTLSN---LRVLLLRGNYLQG----PIPNQLCEL-QKLGIMDLSHNRFNGSIPSCLTSVS 157 (420)
Q Consensus 86 ~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~----~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~ 157 (420)
+|+.|++++|.+.+..+..+..+.+ |++|++++|+++. .+...+..+ ++|+.|++++|.+++.....+...
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~- 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA- 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-
Confidence 9999999999997655555555554 9999999999873 233455667 899999999999874322221110
Q ss_pred ccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCcc
Q 038779 158 FWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNEL 237 (420)
Q Consensus 158 ~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 237 (420)
...+.+|++|++++|.+
T Consensus 161 ---------------------------------------------------------------~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 161 ---------------------------------------------------------------LRANRDLKELNLANNGI 177 (319)
T ss_pred ---------------------------------------------------------------HHhCCCcCEEECcCCCC
Confidence 01156899999999999
Q ss_pred ccC----CCccccCccCCCEEecCCccccccc----chhhhccCCCCEEeCCCCcCcccCCcccc-----CCCCCCEEEc
Q 038779 238 TGG----IPVEIGELQNVRSLNLSHNYLSGSI----PESFFNLKMTESLDLSYNRLRGRVSPRLT-----ELNFLSNFNV 304 (420)
Q Consensus 238 ~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L 304 (420)
++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++.....+. ..+.|++|++
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 853 2334555679999999999987443 34567788999999999999864333322 2478999999
Q ss_pred ccCcCcc--cC---CCCCcCCccCcccccCCcCC
Q 038779 305 SYNNLSG--LV---PDKGQFAIFDESNYRGNIHL 333 (420)
Q Consensus 305 ~~N~l~~--~~---p~~~~~~~l~~~~~~~n~~~ 333 (420)
++|.++. .. .....++.++.+++++|...
T Consensus 258 ~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 258 SCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 9999862 11 11234467888889888753
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.63 E-value=5.5e-16 Score=155.85 Aligned_cols=118 Identities=36% Similarity=0.582 Sum_probs=107.0
Q ss_pred CCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcc
Q 038779 226 YMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVS 305 (420)
Q Consensus 226 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 305 (420)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|+.+..+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCcccCCCC--CcCCccCcccccCCcCCcCCCCCCCCC
Q 038779 306 YNNLSGLVPDK--GQFAIFDESNYRGNIHLCGSIINKSCN 343 (420)
Q Consensus 306 ~N~l~~~~p~~--~~~~~l~~~~~~~n~~~c~~~~~~~C~ 343 (420)
+|+++|.+|.. ..+..+..+++.+|+.+|+.+....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999873 223455678899999999877666774
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.47 E-value=1.7e-15 Score=141.70 Aligned_cols=212 Identities=27% Similarity=0.454 Sum_probs=161.6
Q ss_pred EEEcccCcccccCCh-hh-hcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEeccc
Q 038779 18 VMIMSKNRLEGNIPP-EL-SKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTD 94 (420)
Q Consensus 18 ~L~Ls~n~l~~~~p~-~~-~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 94 (420)
+|.|++-++. ..|. ++ ..+..-.+.||+.|++. .+|..+ .+..|+.+.|..|.+. .+|.++..+..|+.|||+.
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 4556666665 2331 11 24556677888889888 667767 7778888888888888 7888888888899999999
Q ss_pred CcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccch
Q 038779 95 NHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLE 174 (420)
Q Consensus 95 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~ 174 (420)
|+++ ..|..+..++ |+.|-+++|+++ ..|..++.+..|..||.+.|.+. .+|..++.
T Consensus 131 NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~------------------- 187 (722)
T KOG0532|consen 131 NQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY------------------- 187 (722)
T ss_pred chhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-------------------
Confidence 9987 6777777776 888888889888 66777888888889999888887 56655544
Q ss_pred hhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEE
Q 038779 175 WDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSL 254 (420)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 254 (420)
+.+|+.|.+..|++. ..|+++..|+ |..|
T Consensus 188 -------------------------------------------------l~slr~l~vrRn~l~-~lp~El~~Lp-Li~l 216 (722)
T KOG0532|consen 188 -------------------------------------------------LTSLRDLNVRRNHLE-DLPEELCSLP-LIRL 216 (722)
T ss_pred -------------------------------------------------HHHHHHHHHhhhhhh-hCCHHHhCCc-eeee
Confidence 567788888889888 6666666554 8899
Q ss_pred ecCCcccccccchhhhccCCCCEEeCCCCcCcccCCcccc---CCCCCCEEEcccCc
Q 038779 255 NLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLT---ELNFLSNFNVSYNN 308 (420)
Q Consensus 255 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~L~~N~ 308 (420)
|+|.|+++ .+|..|..|+.|++|-|.+|.++ ..|..+. ...=.++|+..-++
T Consensus 217 DfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 217 DFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 99999999 78999999999999999999998 5555442 23345777777664
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.47 E-value=1.5e-15 Score=141.97 Aligned_cols=193 Identities=26% Similarity=0.435 Sum_probs=165.0
Q ss_pred CCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEe
Q 038779 13 FPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLD 91 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 91 (420)
+.--...||+.|++. ++|..+..+..|+.+.|..|.+. .+|... .+..|+.|+|+.|+++ .+|..+..++ |++|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 444567899999999 89999999999999999999998 667777 9999999999999999 7888888875 99999
Q ss_pred cccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccc
Q 038779 92 LTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIEL 171 (420)
Q Consensus 92 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~ 171 (420)
+++|+++ .+|..++.+..|..||.+.|.+. ..|..++.+.+|+.|.++.|++. .+|+.+..
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~---------------- 210 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS---------------- 210 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC----------------
Confidence 9999998 78889999999999999999999 67888999999999999999987 66665443
Q ss_pred cchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCC
Q 038779 172 NLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNV 251 (420)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 251 (420)
-.|..||+|+|++. .+|-.|.+++.|
T Consensus 211 -----------------------------------------------------LpLi~lDfScNkis-~iPv~fr~m~~L 236 (722)
T KOG0532|consen 211 -----------------------------------------------------LPLIRLDFSCNKIS-YLPVDFRKMRHL 236 (722)
T ss_pred -----------------------------------------------------CceeeeecccCcee-ecchhhhhhhhh
Confidence 24788999999999 889999999999
Q ss_pred CEEecCCcccccccchhhhcc---CCCCEEeCCCC
Q 038779 252 RSLNLSHNYLSGSIPESFFNL---KMTESLDLSYN 283 (420)
Q Consensus 252 ~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N 283 (420)
++|-|.+|.+. ..|..+.-. .--++|+..-+
T Consensus 237 q~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 237 QVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 99999999999 566555332 23456666666
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.44 E-value=1.4e-13 Score=132.29 Aligned_cols=198 Identities=35% Similarity=0.473 Sum_probs=109.8
Q ss_pred EEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCC-CCcEEecccCcccccCCcCCCCCCCCcEEEccccc
Q 038779 42 ILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSS-ELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNY 120 (420)
Q Consensus 42 ~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 120 (420)
.++++.|.+.........++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|.....+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 355555555333322224455666666666665 3333344442 5666666666665 334445556666666666666
Q ss_pred ccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCC
Q 038779 121 LQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHG 200 (420)
Q Consensus 121 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (420)
++ .+|...+.+++|+.|++++|++. .+|....
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~---------------------------------------------- 206 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE---------------------------------------------- 206 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhh----------------------------------------------
Confidence 65 33433335556666666666655 3333210
Q ss_pred CCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeC
Q 038779 201 PPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDL 280 (420)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 280 (420)
.+..|++|.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..++.+++|++
T Consensus 207 ----------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 207 ----------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDL 262 (394)
T ss_pred ----------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecc
Confidence 0334666666666433 44445566666666666666666 33555666666777777
Q ss_pred CCCcCcccCCccccCCCCCCEEEcccCcCcccCCC
Q 038779 281 SYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 281 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 315 (420)
++|.++...+ +..+..++.|++++|.+....|.
T Consensus 263 s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 263 SNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccccccc--ccccCccCEEeccCccccccchh
Confidence 7777664333 66666677777777766655544
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.43 E-value=1.8e-13 Score=131.67 Aligned_cols=200 Identities=34% Similarity=0.437 Sum_probs=152.3
Q ss_pred EEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCC-CCcEEECcCCcccccCChhhhCCCCCcEEecccCc
Q 038779 18 VMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLS-SLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNH 96 (420)
Q Consensus 18 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 96 (420)
.++++.|.+.. ....+..++.++.|++.+|.++.+.+.....+ +|+.|++++|++. .+|..+..+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 58888888753 33445667899999999999996555444664 9999999999998 566778999999999999999
Q ss_pred ccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhh
Q 038779 97 FSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWD 176 (420)
Q Consensus 97 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~ 176 (420)
++ .+|...+.+++|+.|++++|+++ .+|.....+..|+.+.+++|++. ..+..+.+
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~--------------------- 230 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN--------------------- 230 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh---------------------
Confidence 98 55555557899999999999999 66666667777999999999633 33333322
Q ss_pred ccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEec
Q 038779 177 LGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNL 256 (420)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 256 (420)
+.++..+.+++|++. ..+..++.+++++.|++
T Consensus 231 -----------------------------------------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 231 -----------------------------------------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDL 262 (394)
T ss_pred -----------------------------------------------cccccccccCCceee-eccchhccccccceecc
Confidence 455566667777776 33666777888888888
Q ss_pred CCcccccccchhhhccCCCCEEeCCCCcCcccCCccc
Q 038779 257 SHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRL 293 (420)
Q Consensus 257 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 293 (420)
++|.++ .++. +..+.+++.|++++|.+....+...
T Consensus 263 s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 263 SNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 888888 4444 7888888888888888876655543
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=2e-12 Score=130.20 Aligned_cols=92 Identities=34% Similarity=0.464 Sum_probs=84.6
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCC-CCCCEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTEL-NFLSNF 302 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L 302 (420)
+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+.++++|+.|+|++|++++.+|..+..+ ..+..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 6889999999999999999999999999999999999999999999999999999999999999999988764 467889
Q ss_pred EcccCcCcccCCC
Q 038779 303 NVSYNNLSGLVPD 315 (420)
Q Consensus 303 ~L~~N~l~~~~p~ 315 (420)
++.+|+..|.+|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999998776553
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=1.9e-12 Score=107.50 Aligned_cols=124 Identities=27% Similarity=0.292 Sum_probs=43.0
Q ss_pred CCCCCCEEEcccCcccccCChhhh-cCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhh-hCCCCCc
Q 038779 12 NFPVLAVMIMSKNRLEGNIPPELS-KFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNAL-FRSSELL 88 (420)
Q Consensus 12 ~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 88 (420)
+..++++|+|++|.|+.+. .++ .+.+|+.|++++|.|+.+. .+ .++.|++|++++|+|+. +.+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccccc--chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 4456778888888877432 344 4677888888888877543 24 67778888888888874 33334 3577788
Q ss_pred EEecccCcccccCC-cCCCCCCCCcEEEcccccccccCC---ccccCCCCCcEEeC
Q 038779 89 TLDLTDNHFSGRIP-HQINTLSNLRVLLLRGNYLQGPIP---NQLCELQKLGIMDL 140 (420)
Q Consensus 89 ~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L 140 (420)
+|+|++|+|..... ..++.+++|+.|+|.+|.++.... ..+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88888887764321 345567777777777777763311 23456777777763
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.26 E-value=1.1e-12 Score=114.01 Aligned_cols=225 Identities=21% Similarity=0.238 Sum_probs=120.2
Q ss_pred CCCCCEEEcccC--------cccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCC
Q 038779 13 FPVLAVMIMSKN--------RLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 13 l~~L~~L~Ls~n--------~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
+..|..|.++.. -+...+|-.+.-+++|.++.+|++.-..+..-...-|.|+++..++..+.. .|. +-..
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe 258 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD-VPS-LLPE 258 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc-ccc-ccch
Confidence 455666666543 122233444455677777777776543222111134667777776655431 111 1111
Q ss_pred CCCcEEecccC-cccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCC
Q 038779 85 SELLTLDLTDN-HFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGK 163 (420)
Q Consensus 85 ~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~ 163 (420)
..+....-+.- -.+|..-.....-+.|+++||++|.|+ .+..+..-++.++.|++++|.+.. + .++.
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v----~nLa------ 326 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V----QNLA------ 326 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e----hhhh------
Confidence 11111100000 001111111111234667777777776 555666666777777777777651 1 1111
Q ss_pred cccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCc
Q 038779 164 NDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPV 243 (420)
Q Consensus 164 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 243 (420)
.+++|+.||||+|.++ .+..
T Consensus 327 -----------------------------------------------------------~L~~L~~LDLS~N~Ls-~~~G 346 (490)
T KOG1259|consen 327 -----------------------------------------------------------ELPQLQLLDLSGNLLA-ECVG 346 (490)
T ss_pred -----------------------------------------------------------hcccceEeecccchhH-hhhh
Confidence 1566777777777776 4444
Q ss_pred cccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccC-CccccCCCCCCEEEcccCcCcccC
Q 038779 244 EIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRV-SPRLTELNFLSNFNVSYNNLSGLV 313 (420)
Q Consensus 244 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~ 313 (420)
+-..+-+.+.|.|+.|.+.. -+.+..+-+|..||+++|+|.... -..++++|.|+++.|.+|++.+.+
T Consensus 347 wh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 44566677777777777652 233566667777777777776432 235677788888888888877654
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=8.4e-13 Score=120.18 Aligned_cols=132 Identities=26% Similarity=0.229 Sum_probs=52.5
Q ss_pred CCCCCEEEcccCcccccCC--hhhhcCCCCCEEEccCCcCcccCCcC-c--CCCCCcEEECcCCcccccCC-hhhhCCCC
Q 038779 13 FPVLAVMIMSKNRLEGNIP--PELSKFGGPLILDVSENCLSGNMPSS-L--NLSSLKHLYLRKNGFNGPIP-NALFRSSE 86 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~n~i~~~~~~~-~--~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 86 (420)
+++|+...|.+..+.. .+ +....+++++.||||+|-+....+.. + .+|+|+.|+++.|++.-... ..-..+++
T Consensus 120 ~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4445555555554431 11 23344555555555555444322211 1 45555555555555431111 01112344
Q ss_pred CcEEecccCcccccC-CcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcc
Q 038779 87 LLTLDLTDNHFSGRI-PHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRF 145 (420)
Q Consensus 87 L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 145 (420)
|+.|.|+.+.++... ......+|+|+.|+|..|...........-++.|+.|||++|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 444444444443111 11122344444444444432222223333344444444444443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=1.6e-12 Score=113.04 Aligned_cols=138 Identities=21% Similarity=0.173 Sum_probs=106.9
Q ss_pred ecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhh
Q 038779 4 GHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALF 82 (420)
Q Consensus 4 g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~ 82 (420)
|+.-..+.....|+.+|||+|.|+ .+.++..-.++++.|++|+|.|..... + .+++|++|||++|.++ .+...-.
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~ 349 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLA-ECVGWHL 349 (490)
T ss_pred CceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhH-hhhhhHh
Confidence 444444445567899999999998 566777778899999999999885433 5 7889999999999988 4444455
Q ss_pred CCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccC-CccccCCCCCcEEeCcCCcccc
Q 038779 83 RSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPI-PNQLCELQKLGIMDLSHNRFNG 147 (420)
Q Consensus 83 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 147 (420)
++.+.++|.|+.|.|... +.++.+-+|..||+.+|+|.... -..+++++-|+++.|.+|.+.+
T Consensus 350 KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 788899999999998632 46777888999999999987432 2467888999999999999873
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.7e-12 Score=116.03 Aligned_cols=137 Identities=23% Similarity=0.186 Sum_probs=107.0
Q ss_pred cccCCCCCCEEEcccCcccc--cCChhhhcCCCCCEEEccCCcCcccCCcCc--CCCCCcEEECcCCcccccC-ChhhhC
Q 038779 9 WIGNFPVLAVMIMSKNRLEG--NIPPELSKFGGPLILDVSENCLSGNMPSSL--NLSSLKHLYLRKNGFNGPI-PNALFR 83 (420)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~l~~L~~L~L~~n~l~~~~-~~~~~~ 83 (420)
....|++++.||||.|-+.. .+-.-...+++|+.|+|+.|++.-...... .++.|+.|.|+.|.++... -.....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 56779999999999998763 233445689999999999999985444444 7889999999999997422 223446
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCC--ccccCCCCCcEEeCcCCccc
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIP--NQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~ 146 (420)
.++|+.|+|..|....+.......+..|++|||++|++. ..+ ...+.++.|+.|+++.+.+.
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcc
Confidence 799999999999643455556677889999999999987 334 55778899999999988876
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=1.4e-12 Score=115.68 Aligned_cols=236 Identities=21% Similarity=0.233 Sum_probs=141.5
Q ss_pred cCCCCCCEEEcccCccccc----CChhhhcCCCCCEEEccCC---cCcccCCcC-------c-CCCCCcEEECcCCcccc
Q 038779 11 GNFPVLAVMIMSKNRLEGN----IPPELSKFGGPLILDVSEN---CLSGNMPSS-------L-NLSSLKHLYLRKNGFNG 75 (420)
Q Consensus 11 ~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n---~i~~~~~~~-------~-~l~~L~~L~L~~n~l~~ 75 (420)
-.+.+++.++||+|.+... +...+.+.++|+..++|+= +....+|++ + +++.|++|+||.|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3456788888888877633 3344556677777777763 222333332 2 56677777777777654
Q ss_pred cCChhh----hCCCCCcEEecccCccccc-------------CCcCCCCCCCCcEEEccccccccc----CCccccCCCC
Q 038779 76 PIPNAL----FRSSELLTLDLTDNHFSGR-------------IPHQINTLSNLRVLLLRGNYLQGP----IPNQLCELQK 134 (420)
Q Consensus 76 ~~~~~~----~~l~~L~~L~L~~N~l~~~-------------~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~ 134 (420)
..+..| ..+..|++|.|.+|.+.-. .......-++|+.+..++|++... +...|...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 444333 3456677777777776411 011123345566666666665422 1233455566
Q ss_pred CcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEecc
Q 038779 135 LGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKN 214 (420)
Q Consensus 135 L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (420)
|+.+.+..|.+. |....-+
T Consensus 187 leevr~~qN~I~---~eG~~al---------------------------------------------------------- 205 (382)
T KOG1909|consen 187 LEEVRLSQNGIR---PEGVTAL---------------------------------------------------------- 205 (382)
T ss_pred cceEEEeccccc---CchhHHH----------------------------------------------------------
Confidence 666666666543 1111000
Q ss_pred CccccCCccccCCCeEEccCCccccC----CCccccCccCCCEEecCCcccccccchhh-----hccCCCCEEeCCCCcC
Q 038779 215 RNELYNGSNLDYMSGLDLSCNELTGG----IPVEIGELQNVRSLNLSHNYLSGSIPESF-----FNLKMTESLDLSYNRL 285 (420)
Q Consensus 215 ~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l 285 (420)
......+++|++|||.+|-++.. +...+..+++|++|+++++.+...-..+| ...++|+.|.+.+|.|
T Consensus 206 ---~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 206 ---AEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred ---HHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 00001167889999999988743 23446667889999999998875544433 3468899999999988
Q ss_pred ccc----CCccccCCCCCCEEEcccCcCc
Q 038779 286 RGR----VSPRLTELNFLSNFNVSYNNLS 310 (420)
Q Consensus 286 ~~~----~~~~~~~l~~L~~L~L~~N~l~ 310 (420)
+.. +...+...+.|..|+|++|++.
T Consensus 283 t~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 283 TRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 742 2233455778888899999883
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=1.8e-11 Score=101.66 Aligned_cols=110 Identities=25% Similarity=0.237 Sum_probs=42.9
Q ss_pred hhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCC-CCCCCCc
Q 038779 34 LSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQI-NTLSNLR 112 (420)
Q Consensus 34 ~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~ 112 (420)
+.+..+++.|+|++|.|+.+..-...+.+|+.|++++|.|+.. + .+..++.|++|++++|+|+.+ ...+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 3456689999999999996543222578999999999999843 3 588899999999999999855 3334 4689999
Q ss_pred EEEcccccccccCC-ccccCCCCCcEEeCcCCccc
Q 038779 113 VLLLRGNYLQGPIP-NQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 113 ~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 146 (420)
+|+|++|+|..... ..+..+++|+.|+|.+|++.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99999999985432 45778999999999999987
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.13 E-value=7e-12 Score=120.93 Aligned_cols=84 Identities=24% Similarity=0.256 Sum_probs=41.4
Q ss_pred CCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCccc---CCcc-ccCCCCCCEE
Q 038779 227 MSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGR---VSPR-LTELNFLSNF 302 (420)
Q Consensus 227 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~-~~~l~~L~~L 302 (420)
|+.+++++|.+. ..+..+..+..+..|++..|++... ..+...+.+..+....|.+... .... ....+.++..
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 556666666665 3324445556666666666665521 1133344455555555554411 1111 3344555666
Q ss_pred EcccCcCcccC
Q 038779 303 NVSYNNLSGLV 313 (420)
Q Consensus 303 ~L~~N~l~~~~ 313 (420)
.+.+|+.....
T Consensus 311 ~~~~~~~~~~~ 321 (414)
T KOG0531|consen 311 TLELNPIRKIS 321 (414)
T ss_pred ccccCcccccc
Confidence 66666555443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.13 E-value=5.5e-11 Score=81.37 Aligned_cols=57 Identities=33% Similarity=0.455 Sum_probs=23.4
Q ss_pred CcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccc
Q 038779 63 LKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGN 119 (420)
Q Consensus 63 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 119 (420)
|++|++++|+++.+.+++|.++++|++|++++|.++.+.|++|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444333333444444444444444444333344444444444444444
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.12 E-value=6.6e-11 Score=80.97 Aligned_cols=61 Identities=33% Similarity=0.504 Sum_probs=57.8
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcc
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRF 145 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 145 (420)
++|++|++++|+++.+.+++|.++++|++|++++|+++...+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999988889999999999999999999999999999999999999999975
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.07 E-value=2e-11 Score=117.80 Aligned_cols=217 Identities=29% Similarity=0.263 Sum_probs=145.6
Q ss_pred CCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEE
Q 038779 12 NFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTL 90 (420)
Q Consensus 12 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 90 (420)
.+..++.+.+..|.+.. +-..+..+++|+.|++.+|.|.++... + .+++|++|++++|+|+.+. .+..+..|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence 35667777888888874 334467788999999999998865443 4 6889999999999998544 36677779999
Q ss_pred ecccCcccccCCcCCCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccc
Q 038779 91 DLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIP-NQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGI 169 (420)
Q Consensus 91 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~ 169 (420)
++++|.|+.+ ..+..+++|+.+++++|.++...+ . ...+.+++.+++.+|.+.... .+..
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~-------------- 206 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDL-------------- 206 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHH--------------
Confidence 9999999743 356668899999999999885544 2 578888999999998875211 1111
Q ss_pred cccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCcc
Q 038779 170 ELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQ 249 (420)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 249 (420)
+..+..+++..|.++...+ +..+.
T Consensus 207 ------------------------------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~ 230 (414)
T KOG0531|consen 207 ------------------------------------------------------LKKLVLLSLLDNKISKLEG--LNELV 230 (414)
T ss_pred ------------------------------------------------------HHHHHHhhcccccceeccC--cccch
Confidence 2233334566666652222 12233
Q ss_pred C--CCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCc
Q 038779 250 N--VRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLS 310 (420)
Q Consensus 250 ~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 310 (420)
. |+.+++++|.+. ..+..+..+..+..|++.+|++..... +...+.+..+....|++.
T Consensus 231 ~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 231 MLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA 290 (414)
T ss_pred hHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence 3 777778888777 444556677777777887777763322 334445555566666554
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=9.3e-12 Score=110.46 Aligned_cols=215 Identities=20% Similarity=0.216 Sum_probs=153.3
Q ss_pred ccccCCCCCCEEEcccC---cccccCChhh-------hcCCCCCEEEccCCcCcccCCcCc-----CCCCCcEEECcCCc
Q 038779 8 SWIGNFPVLAVMIMSKN---RLEGNIPPEL-------SKFGGPLILDVSENCLSGNMPSSL-----NLSSLKHLYLRKNG 72 (420)
Q Consensus 8 ~~~~~l~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~Ls~n~i~~~~~~~~-----~l~~L~~L~L~~n~ 72 (420)
..+.+.++|+.-++|+- +....+|+++ ...++|+.||||+|-+....+..| .+..|++|+|.+|.
T Consensus 52 ~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 52 KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 44566778888888875 3334455443 456799999999998875554444 68899999999998
Q ss_pred ccccCCh-------------hhhCCCCCcEEecccCccccc----CCcCCCCCCCCcEEEccccccccc----CCccccC
Q 038779 73 FNGPIPN-------------ALFRSSELLTLDLTDNHFSGR----IPHQINTLSNLRVLLLRGNYLQGP----IPNQLCE 131 (420)
Q Consensus 73 l~~~~~~-------------~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~ 131 (420)
+...-.. ....-+.|++++.++|++..- +...|...+.|+.+.+..|.|... ...+|..
T Consensus 132 lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~ 211 (382)
T KOG1909|consen 132 LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH 211 (382)
T ss_pred CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh
Confidence 8622111 123347899999999998632 234577789999999999988632 2356889
Q ss_pred CCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEE
Q 038779 132 LQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFV 211 (420)
Q Consensus 132 l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (420)
+++|+.|||++|-++..-...++. .|
T Consensus 212 ~~~LevLdl~DNtft~egs~~Lak--aL---------------------------------------------------- 237 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAK--AL---------------------------------------------------- 237 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHH--Hh----------------------------------------------------
Confidence 999999999999987332222221 00
Q ss_pred eccCccccCCccccCCCeEEccCCccccCCCccc-----cCccCCCEEecCCcccccc----cchhhhccCCCCEEeCCC
Q 038779 212 TKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEI-----GELQNVRSLNLSHNYLSGS----IPESFFNLKMTESLDLSY 282 (420)
Q Consensus 212 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~ 282 (420)
+.+++|+.|++++|.+...-...| ...++|++|.|.+|.++.. +...+...+.|+.|+|++
T Consensus 238 ----------~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 238 ----------SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred ----------cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 115789999999999875443332 2368999999999998743 233456689999999999
Q ss_pred CcCc
Q 038779 283 NRLR 286 (420)
Q Consensus 283 N~l~ 286 (420)
|++.
T Consensus 308 N~l~ 311 (382)
T KOG1909|consen 308 NRLG 311 (382)
T ss_pred cccc
Confidence 9994
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.4e-09 Score=112.35 Aligned_cols=128 Identities=25% Similarity=0.255 Sum_probs=103.7
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCc--CcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEE
Q 038779 14 PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENC--LSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTL 90 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~--i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 90 (420)
...+.+.+-+|.+. .++... ..++|++|-+..|. +.....+.| .++.|++|||++|.=-+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 56788888888876 444443 44589999999996 554555556 89999999999887666899999999999999
Q ss_pred ecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCc
Q 038779 91 DLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNR 144 (420)
Q Consensus 91 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 144 (420)
+|++..++ .+|..++++++|.+|++..+.-...+|.....|++|++|.+..-.
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999998 889999999999999998887655667777889999999886654
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=1.3e-08 Score=105.33 Aligned_cols=107 Identities=27% Similarity=0.320 Sum_probs=83.6
Q ss_pred CCCCCEEEcccCc--ccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcE
Q 038779 13 FPVLAVMIMSKNR--LEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLT 89 (420)
Q Consensus 13 l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 89 (420)
++.|++|-+..|. +..+.++.|..++.|++|||++|.=.+..|..+ .+-+|++|++++..++ .+|..+.++..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3568888888885 554555567788888888888887777888888 7888888888888888 78888888888888
Q ss_pred EecccCcccccCCcCCCCCCCCcEEEccccc
Q 038779 90 LDLTDNHFSGRIPHQINTLSNLRVLLLRGNY 120 (420)
Q Consensus 90 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 120 (420)
|++..+.-....|.....+++|++|.+..-.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccc
Confidence 8888877555557777778888888876543
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.66 E-value=2.2e-10 Score=110.76 Aligned_cols=58 Identities=28% Similarity=0.313 Sum_probs=37.1
Q ss_pred CCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccc
Q 038779 86 ELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 86 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
.|.+.+.++|.+. ....++.-++.|+.|+|++|+++.. +.+..+++|++|||+.|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc
Confidence 4566666666665 4555666666677777777776633 25666667777777777665
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=9.4e-10 Score=106.52 Aligned_cols=154 Identities=28% Similarity=0.226 Sum_probs=105.9
Q ss_pred CccccCCCCCCEEEcccCccccc---CC------------------hh-------hh---cCCCCCEEEccCCcCcccCC
Q 038779 7 PSWIGNFPVLAVMIMSKNRLEGN---IP------------------PE-------LS---KFGGPLILDVSENCLSGNMP 55 (420)
Q Consensus 7 p~~~~~l~~L~~L~Ls~n~l~~~---~p------------------~~-------~~---~l~~L~~L~Ls~n~i~~~~~ 55 (420)
|-.+..+++|++|.|.++.+... .+ +. ++ .+.+|.+.+.+.|.+. ...
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 55677889999999999877531 10 00 01 1235667777777776 344
Q ss_pred cCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCC
Q 038779 56 SSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQK 134 (420)
Q Consensus 56 ~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 134 (420)
.++ -++.|+.|+|++|+++.. +.+..+++|++|||++|.++.+..-...++. |+.|.+++|.++.. ..+.++.+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence 455 678889999999998743 3788899999999999999843333344555 89999999998854 45778899
Q ss_pred CcEEeCcCCccccCC---C-cccccccccccCCccc
Q 038779 135 LGIMDLSHNRFNGSI---P-SCLTSVSFWSQGKNDL 166 (420)
Q Consensus 135 L~~L~L~~N~l~~~~---p-~~l~~l~~l~~~~n~l 166 (420)
|+.||+++|-+.+.- | -.+..|..|.+.+|.+
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999999999876421 1 1345555666555544
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=5.5e-08 Score=85.04 Aligned_cols=222 Identities=20% Similarity=0.154 Sum_probs=118.7
Q ss_pred CCCEEEccCCcCcccCC-cCc--CCCCCcEEECcCCcccc--cCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcE
Q 038779 39 GPLILDVSENCLSGNMP-SSL--NLSSLKHLYLRKNGFNG--PIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRV 113 (420)
Q Consensus 39 ~L~~L~Ls~n~i~~~~~-~~~--~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 113 (420)
.++.|.+.++.|...-. ..| ..+.++.+||.+|.|+. .+...+..++.|++|+|+.|.+...+..--..+.+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44455555555543221 122 56677778888887762 22233456788888888888876433222245677888
Q ss_pred EEccccccccc-CCccccCCCCCcEEeCcCCccccC------CCcccccccccccCCcccccccccchhhccCCCCCccc
Q 038779 114 LLLRGNYLQGP-IPNQLCELQKLGIMDLSHNRFNGS------IPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYD 186 (420)
Q Consensus 114 L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~------~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~ 186 (420)
|-|.+..+.-. ....+..++.++.|.++.|.+.-. ...+-..+..+....+.... +..
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~---------------w~~ 190 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL---------------WLN 190 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH---------------HHH
Confidence 88877766422 223455677777787777754310 00000011111110000000 000
Q ss_pred CcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCC-CccccCccCCCEEecCCcccccc-
Q 038779 187 NSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGI-PVEIGELQNVRSLNLSHNYLSGS- 264 (420)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~- 264 (420)
-..+ ...++++..+.+..|.+.... ...+..++.+-.|+|+.|+|.+.
T Consensus 191 ~~~l------------------------------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa 240 (418)
T KOG2982|consen 191 KNKL------------------------------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA 240 (418)
T ss_pred HHhH------------------------------HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHH
Confidence 0000 011566677777777654322 22345566677888888887632
Q ss_pred cchhhhccCCCCEEeCCCCcCcccCCc------cccCCCCCCEEEcc
Q 038779 265 IPESFFNLKMTESLDLSYNRLRGRVSP------RLTELNFLSNFNVS 305 (420)
Q Consensus 265 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~l~~L~~L~L~ 305 (420)
--+.+.+++.|.-|.+++|.+.+.... .++.+++++.|+=+
T Consensus 241 svD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 241 SVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 234577888888888888877643221 24566777766543
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.46 E-value=7e-09 Score=80.21 Aligned_cols=135 Identities=21% Similarity=0.216 Sum_probs=94.3
Q ss_pred CCCEEEcccCcccccCChhh---hcCCCCCEEEccCCcCcccCCcCc--CCCCCcEEECcCCcccccCChhhhCCCCCcE
Q 038779 15 VLAVMIMSKNRLEGNIPPEL---SKFGGPLILDVSENCLSGNMPSSL--NLSSLKHLYLRKNGFNGPIPNALFRSSELLT 89 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~Ls~n~i~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 89 (420)
.+-.+||+++.+- .++++. .....|+..+|++|.+.. .|..| ..+.++.|++++|.|+ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3557788888765 344443 445667778999998884 45555 6678888899999988 67777888899999
Q ss_pred EecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccc
Q 038779 90 LDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLT 154 (420)
Q Consensus 90 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 154 (420)
|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+-.-......++.++.+.+.-+..+.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 999999887 67777777888888888888877 4454433333333444566666655554433
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.39 E-value=1.2e-08 Score=78.96 Aligned_cols=60 Identities=30% Similarity=0.393 Sum_probs=35.5
Q ss_pred cCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCc
Q 038779 225 DYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLR 286 (420)
Q Consensus 225 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 286 (420)
+.++.|+|++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34555666666665 55555666666666666666666 44444555666666666666555
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=9.3e-07 Score=55.37 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=28.8
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCccc
Q 038779 14 PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGN 53 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~ 53 (420)
++|++|++++|+|+ .+|+.++++++|++|++++|+|+..
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 46888888888888 4566688888888888888887743
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=1.1e-07 Score=82.08 Aligned_cols=63 Identities=25% Similarity=0.136 Sum_probs=31.7
Q ss_pred ccCCCeEEccCCccccCCC----ccccCccCCCEEecCCcccccccchhh------hccCCCCEEeCCCCcCc
Q 038779 224 LDYMSGLDLSCNELTGGIP----VEIGELQNVRSLNLSHNYLSGSIPESF------FNLKMTESLDLSYNRLR 286 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~Ls~N~l~ 286 (420)
+.+|+.|||.+|-++..-. ..+...+.|+.|.+..|-++.....++ ...++|..|...+|.+.
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 4566666666666553221 122334456666666665553332221 12355666666666544
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2e-08 Score=87.73 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=55.9
Q ss_pred ccCCCeEEccCCccc---cCCCccccCccCCCEEecCCcc-cccccchhhhccCCCCEEeCCCCcCcccCCcc---ccCC
Q 038779 224 LDYMSGLDLSCNELT---GGIPVEIGELQNVRSLNLSHNY-LSGSIPESFFNLKMTESLDLSYNRLRGRVSPR---LTEL 296 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l 296 (420)
-++|+.|+|+|+.-. ..+.......++|.+||||.|. ++......|..++.|++|.++.|.. ++|+. +...
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~ 362 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSK 362 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccC
Confidence 467788888876421 1122223467889999999875 4433344577889999999999864 55654 4667
Q ss_pred CCCCEEEcccC
Q 038779 297 NFLSNFNVSYN 307 (420)
Q Consensus 297 ~~L~~L~L~~N 307 (420)
|.|.+||+.+.
T Consensus 363 psl~yLdv~g~ 373 (419)
T KOG2120|consen 363 PSLVYLDVFGC 373 (419)
T ss_pred cceEEEEeccc
Confidence 88999988764
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.5e-06 Score=54.41 Aligned_cols=36 Identities=36% Similarity=0.568 Sum_probs=18.5
Q ss_pred CCCEEecCCcccccccchhhhccCCCCEEeCCCCcCc
Q 038779 250 NVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLR 286 (420)
Q Consensus 250 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 286 (420)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=2.7e-07 Score=80.82 Aligned_cols=225 Identities=16% Similarity=0.156 Sum_probs=124.4
Q ss_pred CCCCCEEEcccCcccccC-Chhh-hcCCCCCEEEccCCcCcc--cCCcCc-CCCCCcEEECcCCcccccCChhh-hCCCC
Q 038779 13 FPVLAVMIMSKNRLEGNI-PPEL-SKFGGPLILDVSENCLSG--NMPSSL-NLSSLKHLYLRKNGFNGPIPNAL-FRSSE 86 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~~~~-p~~~-~~l~~L~~L~Ls~n~i~~--~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~ 86 (420)
.+-++.|.+.++.|..+- -..| +..+.++.+||.+|.|+. .+...+ .+|.|++|+|++|.+...+. .. ..+.+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccc
Confidence 334445566666554211 1122 246788889999998873 222223 78999999999998874332 23 35678
Q ss_pred CcEEecccCcccc-cCCcCCCCCCCCcEEEccccccccc--CCccccCC-CCCcEEeCcCCcccc-----CCCccccccc
Q 038779 87 LLTLDLTDNHFSG-RIPHQINTLSNLRVLLLRGNYLQGP--IPNQLCEL-QKLGIMDLSHNRFNG-----SIPSCLTSVS 157 (420)
Q Consensus 87 L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l-~~L~~L~L~~N~l~~-----~~p~~l~~l~ 157 (420)
|++|-|.+..+.- ........+|.++.|.++.|.+.-. ........ +.+++|....|.... .+...|+++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 8888888877652 2334456788888888888844311 11111111 244444444433210 0112233333
Q ss_pred ccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCcc
Q 038779 158 FWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNEL 237 (420)
Q Consensus 158 ~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 237 (420)
.+.+-.+.+...... -....++.+..|+|+.|+|
T Consensus 203 sv~v~e~PlK~~s~e----------------------------------------------k~se~~p~~~~LnL~~~~i 236 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSE----------------------------------------------KGSEPFPSLSCLNLGANNI 236 (418)
T ss_pred heeeecCcccchhhc----------------------------------------------ccCCCCCcchhhhhccccc
Confidence 222222211111000 0012256667788888888
Q ss_pred ccC-CCccccCccCCCEEecCCcccccccch------hhhccCCCCEEeCCCCcCc
Q 038779 238 TGG-IPVEIGELQNVRSLNLSHNYLSGSIPE------SFFNLKMTESLDLSYNRLR 286 (420)
Q Consensus 238 ~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~l~~L~~L~Ls~N~l~ 286 (420)
..- .-+.+.+++.|..|.+++|.+...... .++.+++++.|+=+ +|+
T Consensus 237 dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIs 290 (418)
T KOG2982|consen 237 DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KIS 290 (418)
T ss_pred ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccc
Confidence 642 234567788899999999987643322 24667888877744 554
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.15 E-value=9.7e-06 Score=64.59 Aligned_cols=121 Identities=15% Similarity=0.142 Sum_probs=58.5
Q ss_pred cccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCC
Q 038779 9 WIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSEL 87 (420)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 87 (420)
.|.++++|+.+.+.. .++.+...+|..+++|+.+.+.++ +.......| +++.|+.+.+.+ .+.......|..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456666777777764 455556666777777777777664 555555666 666777777754 4443555566667777
Q ss_pred cEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCC
Q 038779 88 LTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKL 135 (420)
Q Consensus 88 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 135 (420)
+.+++..+ +..+....|.+. +|+.+.+.. .++......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77777655 444555666665 777777654 3343555666666555
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=8.9e-06 Score=67.56 Aligned_cols=123 Identities=21% Similarity=0.174 Sum_probs=77.5
Q ss_pred CCEEEcccCcccccCChhhh-cCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecc
Q 038779 16 LAVMIMSKNRLEGNIPPELS-KFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLT 93 (420)
Q Consensus 16 L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 93 (420)
=+.++|.+.++..+.- ++ .......+||++|.+... +.| .++.|.+|.+++|+|+.+.|.--..+++|+.|.|.
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 3566666666542211 11 234566788888877632 224 67778888888888887666655566778888888
Q ss_pred cCcccccCC-cCCCCCCCCcEEEcccccccccCC---ccccCCCCCcEEeCcC
Q 038779 94 DNHFSGRIP-HQINTLSNLRVLLLRGNYLQGPIP---NQLCELQKLGIMDLSH 142 (420)
Q Consensus 94 ~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~ 142 (420)
+|.|..... .-+..+|+|++|.+-+|.++..-- ..+..+++|++||.+.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 887763211 235567788888887777663321 2356777888887765
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.07 E-value=6e-06 Score=68.53 Aligned_cols=107 Identities=22% Similarity=0.172 Sum_probs=77.0
Q ss_pred CCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcc
Q 038779 38 GGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLR 117 (420)
Q Consensus 38 ~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 117 (420)
..-+.++|.+.++..+.--..-+.+...+||++|.+. --+.|..++.|.+|.|++|+|+.+.|.--.-+++|..|.|.
T Consensus 19 ~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 19 VRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccccchhhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 3466778888777643331114556778889999886 23457788889999999999987777666667888899999
Q ss_pred cccccccCC-ccccCCCCCcEEeCcCCccc
Q 038779 118 GNYLQGPIP-NQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 118 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 146 (420)
+|.|..... .-+..++.|++|.+-+|++.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchh
Confidence 888874321 33567788888888888765
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=2.1e-05 Score=73.83 Aligned_cols=15 Identities=7% Similarity=0.065 Sum_probs=7.0
Q ss_pred CCCCCEEEcccCccc
Q 038779 13 FPVLAVMIMSKNRLE 27 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~ 27 (420)
+++++.|++++|.++
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 344445555544444
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=6.3e-08 Score=84.69 Aligned_cols=177 Identities=21% Similarity=0.114 Sum_probs=99.0
Q ss_pred CCCcEEECcCCcccc-cCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEccccc-cccc-CCccccCCCCCcE
Q 038779 61 SSLKHLYLRKNGFNG-PIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNY-LQGP-IPNQLCELQKLGI 137 (420)
Q Consensus 61 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~ 137 (420)
..|++|||+...|+. .+-..+..+.+|+-|.|.++++...+...++.-.+|+.|+++.+. ++.. ..-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 346677776666642 222334456667777777777766666666666677777766543 2210 1123456667777
Q ss_pred EeCcCCccccCCCcc-----cccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEe
Q 038779 138 MDLSHNRFNGSIPSC-----LTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVT 212 (420)
Q Consensus 138 L~L~~N~l~~~~p~~-----l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (420)
|+|+.+.+....... -..++.|.+++.+-..... .+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-----------------h~---------------------- 305 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-----------------HL---------------------- 305 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh-----------------HH----------------------
Confidence 777766554221110 1122222221111000000 00
Q ss_pred ccCccccCCccccCCCeEEccCCc-cccCCCccccCccCCCEEecCCcccccccchh---hhccCCCCEEeCCCC
Q 038779 213 KNRNELYNGSNLDYMSGLDLSCNE-LTGGIPVEIGELQNVRSLNLSHNYLSGSIPES---FFNLKMTESLDLSYN 283 (420)
Q Consensus 213 ~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~N 283 (420)
..-....++|..||||+|. ++...-.+|.+++.|++|.++++.. ++|.. +..+++|.+||+.++
T Consensus 306 -----~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 306 -----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -----HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 0000126889999999875 4433444677889999999999864 35554 577899999998776
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.96 E-value=2.8e-06 Score=73.66 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=62.5
Q ss_pred cCCCeEEccCCccccCCC-----ccccCccCCCEEecCCcccccc----cchhhhccCCCCEEeCCCCcCcccCCcc---
Q 038779 225 DYMSGLDLSCNELTGGIP-----VEIGELQNVRSLNLSHNYLSGS----IPESFFNLKMTESLDLSYNRLRGRVSPR--- 292 (420)
Q Consensus 225 ~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--- 292 (420)
..|+.+.+..|.|.-.-- ..+..+++|+.|||..|-++-. ....+..++.|+.|.+.+|-++.....+
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 467888888888762211 1234568999999999998732 3445677888999999999887654433
Q ss_pred -cc--CCCCCCEEEcccCcCcccC
Q 038779 293 -LT--ELNFLSNFNVSYNNLSGLV 313 (420)
Q Consensus 293 -~~--~l~~L~~L~L~~N~l~~~~ 313 (420)
|. ..+.|..|...+|...+.+
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred HhhhhcCCCccccccchhhhcCce
Confidence 22 3567888888888765543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=4.4e-05 Score=71.70 Aligned_cols=81 Identities=17% Similarity=0.393 Sum_probs=52.1
Q ss_pred CCCCCcEEECcCCcccccCChhhhCCCCCcEEeccc-CcccccCCcCCCCCCCCcEEEcccc-cccccCCccccCCCCCc
Q 038779 59 NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTD-NHFSGRIPHQINTLSNLRVLLLRGN-YLQGPIPNQLCELQKLG 136 (420)
Q Consensus 59 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 136 (420)
.+.+++.|++++|.++ .+|. + -.+|++|++++ +.++ .+|+.+ .++|+.|++++| .+. .+|. +|+
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVR 115 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-cccc------ccc
Confidence 4788889999988887 4452 1 13688888887 4443 666554 357888888887 554 3443 467
Q ss_pred EEeCcCCccc--cCCCccc
Q 038779 137 IMDLSHNRFN--GSIPSCL 153 (420)
Q Consensus 137 ~L~L~~N~l~--~~~p~~l 153 (420)
.|+++.+... +.+|..+
T Consensus 116 ~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred eEEeCCCCCcccccCcchH
Confidence 7777766542 2445443
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.84 E-value=7.9e-05 Score=59.27 Aligned_cols=121 Identities=10% Similarity=0.115 Sum_probs=74.3
Q ss_pred CChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCC
Q 038779 30 IPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTL 108 (420)
Q Consensus 30 ~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 108 (420)
...+|.++++|+.+.+.. .+..+....| ++++|+.+.+..+ +......+|.++.+|+.+.+.+ .+.......|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 356788888999999985 5777888888 8889999999875 7767778899998999999976 5554667789889
Q ss_pred CCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccc
Q 038779 109 SNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSV 156 (420)
Q Consensus 109 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 156 (420)
++|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~ 125 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNC 125 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG--
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccc
Confidence 99999999776 665667788887 899998875 3332333344443
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.83 E-value=6.7e-06 Score=71.15 Aligned_cols=108 Identities=21% Similarity=0.206 Sum_probs=73.1
Q ss_pred CChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCC--cccccCChhhhCCCCCcEEecccCcccccCCcC--
Q 038779 30 IPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKN--GFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQ-- 104 (420)
Q Consensus 30 ~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-- 104 (420)
+......+..|+.|++.+..++.. ..| .+++|++|.++.| ++++-++-....+++|++|+|++|+|+. +.+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 445555667777777777776632 224 6788888888888 6665555555566888888888888862 333
Q ss_pred -CCCCCCCcEEEcccccccccCC---ccccCCCCCcEEeCc
Q 038779 105 -INTLSNLRVLLLRGNYLQGPIP---NQLCELQKLGIMDLS 141 (420)
Q Consensus 105 -~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~ 141 (420)
...+.+|..|++.+|..+.... ..|.-+++|++||-.
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 3456677888888887765321 346677888888743
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=1.5e-05 Score=80.93 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=79.3
Q ss_pred CCCCEEEcccCcc-cccCChhhh-cCCCCCEEEccCCcCcccCC-cCc-CCCCCcEEECcCCcccccCChhhhCCCCCcE
Q 038779 14 PVLAVMIMSKNRL-EGNIPPELS-KFGGPLILDVSENCLSGNMP-SSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLT 89 (420)
Q Consensus 14 ~~L~~L~Ls~n~l-~~~~p~~~~-~l~~L~~L~Ls~n~i~~~~~-~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 89 (420)
.+|++||+++... ...-|..++ -+|+|+.|.+++-.+....- ..+ +.++|..||+|+.+++.. ..++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 3577777777542 222333333 46788888887766643321 112 677888888888877633 56777777877
Q ss_pred EecccCcccc-cCCcCCCCCCCCcEEEcccccccccC--C----ccccCCCCCcEEeCcCCcccc
Q 038779 90 LDLTDNHFSG-RIPHQINTLSNLRVLLLRGNYLQGPI--P----NQLCELQKLGIMDLSHNRFNG 147 (420)
Q Consensus 90 L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~--~----~~~~~l~~L~~L~L~~N~l~~ 147 (420)
|.+.+=.+.. ..-..+..|++|+.||+|..+..... . +.-..+++|+.||.|++.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7777655542 11123456788888888776544221 0 112346788888888776653
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=1.4e-05 Score=81.12 Aligned_cols=107 Identities=26% Similarity=0.351 Sum_probs=72.5
Q ss_pred CCCCEEEccCCcCc-ccCCcCc--CCCCCcEEECcCCcccc-cCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcE
Q 038779 38 GGPLILDVSENCLS-GNMPSSL--NLSSLKHLYLRKNGFNG-PIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRV 113 (420)
Q Consensus 38 ~~L~~L~Ls~n~i~-~~~~~~~--~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 113 (420)
.+|+.||+++...- ...|..+ -+|.|+.|.+++-.+.. .....+.+.++|..||+|+.+++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 57888888886432 2223333 68888888888766532 1223445678888999999888744 56788888888
Q ss_pred EEcccccccc-cCCccccCCCCCcEEeCcCCccc
Q 038779 114 LLLRGNYLQG-PIPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 114 L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
|.+.+=.+.. ..-..+.+|++|++||+|..+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 8887655442 11134667888999998887654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.56 E-value=3.9e-05 Score=66.50 Aligned_cols=86 Identities=27% Similarity=0.344 Sum_probs=49.2
Q ss_pred CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccC--cccccCCcCCCCCCCCcEEEccccccccc-CCccccCCCCC
Q 038779 59 NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDN--HFSGRIPHQINTLSNLRVLLLRGNYLQGP-IPNQLCELQKL 135 (420)
Q Consensus 59 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L 135 (420)
....|+.|++.+..++.. ..|..+++|+.|.++.| ++.+-++.-...+++|++|++++|+|.-. .-..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 455666666666665521 23556677777777777 44444443344457777777777776621 01123445566
Q ss_pred cEEeCcCCccc
Q 038779 136 GIMDLSHNRFN 146 (420)
Q Consensus 136 ~~L~L~~N~l~ 146 (420)
..||+.++.-+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 67777666544
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=7.8e-05 Score=65.14 Aligned_cols=99 Identities=23% Similarity=0.163 Sum_probs=46.4
Q ss_pred CCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCC-cCCCCCCCCcEEEc
Q 038779 38 GGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIP-HQINTLSNLRVLLL 116 (420)
Q Consensus 38 ~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L 116 (420)
.+.+.|+..++.+..+. -.-.|+.|++|.|+-|+|+..- .|..+.+|++|+|..|.|....- .-+.++++|+.|.|
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34444455555444211 0004555555555555554221 24455555555555555542211 12455666666666
Q ss_pred ccccccccCCc-----cccCCCCCcEEe
Q 038779 117 RGNYLQGPIPN-----QLCELQKLGIMD 139 (420)
Q Consensus 117 ~~N~l~~~~~~-----~~~~l~~L~~L~ 139 (420)
..|.-.+..+. .+..+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 66655443332 234556666664
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.0003 Score=61.59 Aligned_cols=99 Identities=27% Similarity=0.226 Sum_probs=75.6
Q ss_pred CCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccC-ChhhhCCCCCcEE
Q 038779 13 FPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPI-PNALFRSSELLTL 90 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 90 (420)
+.+.+.|+..++.++++ .....|+.|+.|.||-|+|+.+.| + .+++|++|+|..|.|.... -.-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 56778899999999854 234689999999999999996554 5 8899999999999997322 1235688999999
Q ss_pred ecccCcccccCCc-----CCCCCCCCcEEE
Q 038779 91 DLTDNHFSGRIPH-----QINTLSNLRVLL 115 (420)
Q Consensus 91 ~L~~N~l~~~~p~-----~~~~l~~L~~L~ 115 (420)
.|..|.-.+.-+. .+.-||+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999987654432 234477888775
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.03 E-value=0.003 Score=32.80 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=12.9
Q ss_pred CCCEEEcccCcccccCChhhhc
Q 038779 15 VLAVMIMSKNRLEGNIPPELSK 36 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~~~~~ 36 (420)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3667777777777 55555543
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0038 Score=32.39 Aligned_cols=19 Identities=53% Similarity=0.695 Sum_probs=9.0
Q ss_pred CCEEecCCcccccccchhhh
Q 038779 251 VRSLNLSHNYLSGSIPESFF 270 (420)
Q Consensus 251 L~~L~Ls~N~l~~~~~~~~~ 270 (420)
|++|||++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 3444343
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.38 E-value=0.00041 Score=59.15 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=54.3
Q ss_pred hhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCc
Q 038779 34 LSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLR 112 (420)
Q Consensus 34 ~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 112 (420)
+..+...+.||++.|++.. .-..| -+..|..|+++.|.+. ..|..+.....+..+++..|..+ ..|.++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 4445566666666666552 22333 5556666666666666 56666666666666666666665 6677777777777
Q ss_pred EEEccccccc
Q 038779 113 VLLLRGNYLQ 122 (420)
Q Consensus 113 ~L~L~~N~l~ 122 (420)
++++-.|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777776654
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.88 E-value=0.0011 Score=56.74 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=74.2
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
....+.||++.|++. ....-|+.+..|..||++.|++. ..|..+.+...++.+++.+|..+ ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 567888999999876 45556788899999999999999 88999999999999999999988 7889999999999999
Q ss_pred cccCcCc
Q 038779 304 VSYNNLS 310 (420)
Q Consensus 304 L~~N~l~ 310 (420)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999864
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.22 E-value=0.00018 Score=69.95 Aligned_cols=82 Identities=24% Similarity=0.233 Sum_probs=40.8
Q ss_pred CCEEEcccCcccccCC----hhhhcCCCCCEEEccCCcCcccCCc----Cc-C-CCCCcEEECcCCccccc----CChhh
Q 038779 16 LAVMIMSKNRLEGNIP----PELSKFGGPLILDVSENCLSGNMPS----SL-N-LSSLKHLYLRKNGFNGP----IPNAL 81 (420)
Q Consensus 16 L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n~i~~~~~~----~~-~-l~~L~~L~L~~n~l~~~----~~~~~ 81 (420)
+..|+|.+|.+..... ..+.....|+.|++++|.+....-. .+ . -..|++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566666666653322 2334556666666666666522111 11 1 13455555555555432 22333
Q ss_pred hCCCCCcEEecccCcc
Q 038779 82 FRSSELLTLDLTDNHF 97 (420)
Q Consensus 82 ~~l~~L~~L~L~~N~l 97 (420)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4445555566666555
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.98 E-value=0.00021 Score=69.58 Aligned_cols=84 Identities=26% Similarity=0.224 Sum_probs=52.9
Q ss_pred CcEEECcCCcccccC----ChhhhCCCCCcEEecccCcccccCC----cCCCCC-CCCcEEEccccccccc----CCccc
Q 038779 63 LKHLYLRKNGFNGPI----PNALFRSSELLTLDLTDNHFSGRIP----HQINTL-SNLRVLLLRGNYLQGP----IPNQL 129 (420)
Q Consensus 63 L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l-~~L~~L~L~~N~l~~~----~~~~~ 129 (420)
+..|.|.+|.+.... ..++.....|+.|++++|.+....- ..+... ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777776432 3345566778888888888762211 122222 4567777777777643 33455
Q ss_pred cCCCCCcEEeCcCCccc
Q 038779 130 CELQKLGIMDLSHNRFN 146 (420)
Q Consensus 130 ~~l~~L~~L~L~~N~l~ 146 (420)
.....++.+|++.|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLI 185 (478)
T ss_pred hcccchhHHHHHhcccc
Confidence 56777888888888764
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.81 E-value=0.039 Score=26.52 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=4.9
Q ss_pred CCCEEEcccCccc
Q 038779 15 VLAVMIMSKNRLE 27 (420)
Q Consensus 15 ~L~~L~Ls~n~l~ 27 (420)
+|+.|+|++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3445555555444
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.30 E-value=0.06 Score=29.07 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=4.6
Q ss_pred CcEEECcCCccc
Q 038779 63 LKHLYLRKNGFN 74 (420)
Q Consensus 63 L~~L~L~~n~l~ 74 (420)
|++|+|++|+++
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00369 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 333333333333
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.30 E-value=0.06 Score=29.07 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=4.6
Q ss_pred CcEEECcCCccc
Q 038779 63 LKHLYLRKNGFN 74 (420)
Q Consensus 63 L~~L~L~~n~l~ 74 (420)
|++|+|++|+++
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00370 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 333333333333
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.49 E-value=0.1 Score=28.17 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=7.9
Q ss_pred CCCCEEEcccCcccc
Q 038779 14 PVLAVMIMSKNRLEG 28 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~ 28 (420)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 445555555555553
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.49 E-value=0.1 Score=28.17 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=7.9
Q ss_pred CCCCEEEcccCcccc
Q 038779 14 PVLAVMIMSKNRLEG 28 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~ 28 (420)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 445555555555553
No 78
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=92.02 E-value=0.11 Score=59.71 Aligned_cols=37 Identities=22% Similarity=0.102 Sum_probs=33.3
Q ss_pred eCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC
Q 038779 279 DLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 279 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 315 (420)
||++|+|+.+.+..|..+++|+.|+|++|+|.|.|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 6889999988888899999999999999999999953
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.93 E-value=0.063 Score=28.36 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=9.4
Q ss_pred CCCCEEEcccCcccccCC
Q 038779 14 PVLAVMIMSKNRLEGNIP 31 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p 31 (420)
++|++|+|++|.|++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 556666666666654433
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.80 E-value=0.059 Score=45.36 Aligned_cols=78 Identities=24% Similarity=0.186 Sum_probs=40.0
Q ss_pred CCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhh----CCCCCcEEecccC-cccccCCcCCCCCCCCc
Q 038779 39 GPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALF----RSSELLTLDLTDN-HFSGRIPHQINTLSNLR 112 (420)
Q Consensus 39 ~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~ 112 (420)
.++.+|-++..|..+--+-+ +++.++.|.+.+++--+ ...+. -.++|+.|++++| +|+..--..+..+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~d--D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFD--DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchh--hHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 35555555555554444444 55555555555554311 11111 2356777777755 45543334455666666
Q ss_pred EEEccc
Q 038779 113 VLLLRG 118 (420)
Q Consensus 113 ~L~L~~ 118 (420)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 666543
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.72 E-value=0.83 Score=24.67 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=6.4
Q ss_pred CCCEEEccCCcCc
Q 038779 39 GPLILDVSENCLS 51 (420)
Q Consensus 39 ~L~~L~Ls~n~i~ 51 (420)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4445555555444
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.04 E-value=0.34 Score=47.73 Aligned_cols=109 Identities=18% Similarity=-0.008 Sum_probs=56.5
Q ss_pred CCCCCEEEccCCcCccc---CCcCcCCCCCcEEECcCC-cccccC----ChhhhCCCCCcEEecccCc-ccccCCcCCC-
Q 038779 37 FGGPLILDVSENCLSGN---MPSSLNLSSLKHLYLRKN-GFNGPI----PNALFRSSELLTLDLTDNH-FSGRIPHQIN- 106 (420)
Q Consensus 37 l~~L~~L~Ls~n~i~~~---~~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~- 106 (420)
.+.|+.|.+.++.-... .+.....++|+.|+++++ ...... ......+.+|+.|++++.. ++...-..++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56677777766633222 122226677777777652 111011 1123345677777777766 4432222222
Q ss_pred CCCCCcEEEccccc-ccccC-CccccCCCCCcEEeCcCCcc
Q 038779 107 TLSNLRVLLLRGNY-LQGPI-PNQLCELQKLGIMDLSHNRF 145 (420)
Q Consensus 107 ~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l 145 (420)
.+++|++|.+.++. ++... -.....+++|+.|+++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 26677777766655 33221 12234566788888776654
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.02 E-value=0.18 Score=49.69 Aligned_cols=107 Identities=24% Similarity=0.130 Sum_probs=64.3
Q ss_pred ccCCCCCCEEEcccC-cccccCC----hhhhcCCCCCEEEccCCc-CcccCCcCc--CCCCCcEEECcCCc-ccccC-Ch
Q 038779 10 IGNFPVLAVMIMSKN-RLEGNIP----PELSKFGGPLILDVSENC-LSGNMPSSL--NLSSLKHLYLRKNG-FNGPI-PN 79 (420)
Q Consensus 10 ~~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~--~l~~L~~L~L~~n~-l~~~~-~~ 79 (420)
...++.|+.|+++++ ......+ .....+++|+.|+++.+. ++...-..+ .+++|++|.+.++. ++... -.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 446788999999873 2211111 233456899999999988 443332333 47899999977776 54322 22
Q ss_pred hhhCCCCCcEEecccCcccc--cCCcCCCCCCCCcEEEc
Q 038779 80 ALFRSSELLTLDLTDNHFSG--RIPHQINTLSNLRVLLL 116 (420)
Q Consensus 80 ~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L 116 (420)
....++.|++|+++++.... .+.....++++|+.|.+
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 33457889999999776421 11112333555555443
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.47 E-value=0.33 Score=41.04 Aligned_cols=85 Identities=13% Similarity=0.066 Sum_probs=51.5
Q ss_pred CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCccccc-CCcCC-CCCCCCcEEEcccc-cccccCCccccCCCCC
Q 038779 59 NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGR-IPHQI-NTLSNLRVLLLRGN-YLQGPIPNQLCELQKL 135 (420)
Q Consensus 59 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 135 (420)
.-..++.++-++..|....-+.+.+++.++.|.+.++.--+- --+-+ +..++|+.|++++| +||...-..+..+++|
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 334567778888877766666667777777777776542100 00001 13577888888866 3554434456677777
Q ss_pred cEEeCcCC
Q 038779 136 GIMDLSHN 143 (420)
Q Consensus 136 ~~L~L~~N 143 (420)
+.|.+.+-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 77777653
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.93 E-value=14 Score=35.66 Aligned_cols=104 Identities=23% Similarity=0.126 Sum_probs=51.0
Q ss_pred CCCCEEEccCCcCcccCCcCc---CCCCCcEEECcCCcccccCCh---hhhCCCCCcEEecccCcccccCCcCCCC---C
Q 038779 38 GGPLILDVSENCLSGNMPSSL---NLSSLKHLYLRKNGFNGPIPN---ALFRSSELLTLDLTDNHFSGRIPHQINT---L 108 (420)
Q Consensus 38 ~~L~~L~Ls~n~i~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~p~~~~~---l 108 (420)
+.+++++++.|.+....|-.+ ..+ +.++.++++...-. .=..-..+.+++|+.|.....+|..... -
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 456777787777766655554 222 44444444321100 0011234667777777766555544322 1
Q ss_pred CCCcEEEcccccccc---cCCccccCCCCCcEEeCcCCcc
Q 038779 109 SNLRVLLLRGNYLQG---PIPNQLCELQKLGIMDLSHNRF 145 (420)
Q Consensus 109 ~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l 145 (420)
..++.++.+...++. ..+-.++.-++|...+++.|..
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 234555555544331 1122334445666666666654
No 86
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=76.39 E-value=1.4 Score=34.93 Aligned_cols=8 Identities=38% Similarity=0.252 Sum_probs=3.0
Q ss_pred hhcccccc
Q 038779 389 WINSCWRR 396 (420)
Q Consensus 389 ~~~~~~~~ 396 (420)
++.+|+++
T Consensus 21 ~~~rRR~r 28 (130)
T PF12273_consen 21 CHNRRRRR 28 (130)
T ss_pred HHHHHHhh
Confidence 33333333
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.97 E-value=2 Score=23.15 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=7.3
Q ss_pred CCCEEeCCCCcCc
Q 038779 274 MTESLDLSYNRLR 286 (420)
Q Consensus 274 ~L~~L~Ls~N~l~ 286 (420)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.03 E-value=2.8 Score=22.99 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=8.5
Q ss_pred CCCCEEeCCCCcCc
Q 038779 273 KMTESLDLSYNRLR 286 (420)
Q Consensus 273 ~~L~~L~Ls~N~l~ 286 (420)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666666666654
No 89
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.52 E-value=3 Score=32.39 Aligned_cols=15 Identities=7% Similarity=0.310 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHHH
Q 038779 373 FAASYVTFILGLLAI 387 (420)
Q Consensus 373 ~~~~~~~~~~~~~~~ 387 (420)
+++++++++++++++
T Consensus 69 Ii~gv~aGvIg~Ill 83 (122)
T PF01102_consen 69 IIFGVMAGVIGIILL 83 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 334444443333333
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.23 E-value=2.4 Score=41.44 Aligned_cols=80 Identities=25% Similarity=0.254 Sum_probs=41.2
Q ss_pred CCCCCcEEECcCCccccc--CChhhhCCCCCcEEecccC--cccccC-CcCCCCCCCCcEEEcccccccccCCc------
Q 038779 59 NLSSLKHLYLRKNGFNGP--IPNALFRSSELLTLDLTDN--HFSGRI-PHQINTLSNLRVLLLRGNYLQGPIPN------ 127 (420)
Q Consensus 59 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~N--~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~------ 127 (420)
+.+.+..++|++|++-.. +..--...++|+.|+|++| .+.... -..+++ ..|++|-|.+|.+......
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchhhhHHHHH
Confidence 556666777777776421 1111223467777777777 332110 111222 3477777777776533211
Q ss_pred -cccCCCCCcEEe
Q 038779 128 -QLCELQKLGIMD 139 (420)
Q Consensus 128 -~~~~l~~L~~L~ 139 (420)
.-...|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 112456666665
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.32 E-value=2.5 Score=41.35 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=7.1
Q ss_pred CCcEEecccCccc
Q 038779 86 ELLTLDLTDNHFS 98 (420)
Q Consensus 86 ~L~~L~L~~N~l~ 98 (420)
.|++|-|.+|.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 3555555555554
No 92
>PF15102 TMEM154: TMEM154 protein family
Probab=69.88 E-value=2.7 Score=33.46 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhccccccee
Q 038779 378 VTFILGLLAILWINSCWRRLW 398 (420)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~ 398 (420)
+++++++++++++++|||.+.
T Consensus 69 vlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 69 VLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHheeEEeecccCC
Confidence 344445555566666666644
No 93
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=67.67 E-value=1.7 Score=26.15 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHhh
Q 038779 373 FAASYVTFILGLLAILW 389 (420)
Q Consensus 373 ~~~~~~~~~~~~~~~~~ 389 (420)
+++-+++++++++++++
T Consensus 17 VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 17 VVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEechHHHHHHHHHHhh
Confidence 33333444433333333
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=66.90 E-value=2.7 Score=39.69 Aligned_cols=133 Identities=19% Similarity=0.134 Sum_probs=82.8
Q ss_pred CCCCCEEEcccCc-ccccCChhh-hcCCCCCEEEccCCcC-cccCCcCc--CCCCCcEEECcCCcccc--cCChhhhCCC
Q 038779 13 FPVLAVMIMSKNR-LEGNIPPEL-SKFGGPLILDVSENCL-SGNMPSSL--NLSSLKHLYLRKNGFNG--PIPNALFRSS 85 (420)
Q Consensus 13 l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~Ls~n~i-~~~~~~~~--~l~~L~~L~L~~n~l~~--~~~~~~~~l~ 85 (420)
+..|+.|+.++.. ++...-.++ .+..+|++|-++.++- +..--..+ +.+.|+.+++....... .+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 5677888888764 333333333 3568899999988863 22221222 67888888888876531 1222233568
Q ss_pred CCcEEecccCcccccC-----CcCCCCCCCCcEEEccccccccc-CCccccCCCCCcEEeCcCCcc
Q 038779 86 ELLTLDLTDNHFSGRI-----PHQINTLSNLRVLLLRGNYLQGP-IPNQLCELQKLGIMDLSHNRF 145 (420)
Q Consensus 86 ~L~~L~L~~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l 145 (420)
.|++|.|++....... ...-.++..|..+.|+++..+.. .-..+..+++|+.+++-+.+-
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 8999999877643111 22334567788889988876522 223456677888888877653
No 95
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=66.64 E-value=5.6 Score=36.76 Aligned_cols=12 Identities=17% Similarity=0.265 Sum_probs=4.5
Q ss_pred hHHHHHHHHHHH
Q 038779 373 FAASYVTFILGL 384 (420)
Q Consensus 373 ~~~~~~~~~~~~ 384 (420)
+++++++++++|
T Consensus 277 VG~~La~lvliv 288 (306)
T PF01299_consen 277 VGAALAGLVLIV 288 (306)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 96
>PF15050 SCIMP: SCIMP protein
Probab=64.26 E-value=5.1 Score=30.41 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=13.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcccccce
Q 038779 369 FNWSFAASYVTFILGLLAILWINSCWRRL 397 (420)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (420)
|+++++++++++.+++..++|+..||+.|
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLR 36 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445444444444455544455444
No 97
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=62.50 E-value=2.7 Score=39.71 Aligned_cols=133 Identities=18% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCCCEEEcccC-cccccCChhh-hcCCCCCEEEccCCcCc-ccCCcCc--CCCCCcEEECcCCc-ccccCChhhh-CCCC
Q 038779 14 PVLAVMIMSKN-RLEGNIPPEL-SKFGGPLILDVSENCLS-GNMPSSL--NLSSLKHLYLRKNG-FNGPIPNALF-RSSE 86 (420)
Q Consensus 14 ~~L~~L~Ls~n-~l~~~~p~~~-~~l~~L~~L~Ls~n~i~-~~~~~~~--~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~ 86 (420)
..+..+++..+ .++++.-..+ ..+..|+.|+.+++.-. ...-.++ ...+|++|-++.++ ++..--..++ +.+.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 34556666565 3443321111 24678999999987542 2222333 68899999999887 3322222222 4678
Q ss_pred CcEEecccCccc--ccCCcCCCCCCCCcEEEcccccccccC-----CccccCCCCCcEEeCcCCccc
Q 038779 87 LLTLDLTDNHFS--GRIPHQINTLSNLRVLLLRGNYLQGPI-----PNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 87 L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~ 146 (420)
|+.+++...... +.+...-.+++.|+.|.++++...... ...-..+..|+.+.|++.+..
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 999999887653 112223346788999999988754222 223356778999999988754
No 98
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=60.47 E-value=3.2 Score=33.25 Aligned_cols=8 Identities=0% Similarity=-0.163 Sum_probs=3.4
Q ss_pred hhhhHHHH
Q 038779 370 NWSFAASY 377 (420)
Q Consensus 370 ~~~~~~~~ 377 (420)
++++++++
T Consensus 51 VIGvVVGV 58 (154)
T PF04478_consen 51 VIGVVVGV 58 (154)
T ss_pred EEEEEecc
Confidence 34444443
No 99
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=60.09 E-value=3.9 Score=34.79 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=14.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcccc
Q 038779 366 MVSFNWSFAASYVTFILGLLAILWINSCW 394 (420)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (420)
...+++++++|++++++++++++++++|+
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 34444555555555555444444555455
No 100
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=57.65 E-value=6.5 Score=35.89 Aligned_cols=20 Identities=5% Similarity=0.180 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhcccccce
Q 038779 378 VTFILGLLAILWINSCWRRL 397 (420)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~ 397 (420)
++++++|++.+..++|++++
T Consensus 267 iIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 267 IIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444333
No 101
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=55.41 E-value=9.4 Score=27.68 Aligned_cols=31 Identities=0% Similarity=-0.098 Sum_probs=17.9
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHhhhccccc
Q 038779 365 DMVSFNWSFAASYVTFILGLLAILWINSCWR 395 (420)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (420)
...|.+++.+.+++++++++..+.+.+.+|+
T Consensus 39 ~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 39 VAYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred HhhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 3456666666666666665555555555554
No 102
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=53.06 E-value=17 Score=25.52 Aligned_cols=14 Identities=0% Similarity=0.147 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHHH
Q 038779 373 FAASYVTFILGLLA 386 (420)
Q Consensus 373 ~~~~~~~~~~~~~~ 386 (420)
++++++++++++++
T Consensus 6 ~~~g~~~ll~~v~~ 19 (75)
T PF14575_consen 6 IIVGVLLLLVLVII 19 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhee
Confidence 34444333333333
No 103
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=49.24 E-value=12 Score=33.40 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhhcccccceeee
Q 038779 375 ASYVTFILGLLAILWINSCWRRLWFY 400 (420)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (420)
+.|++++.+|++++|++.++||+.-|
T Consensus 265 alvllil~vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 33333444444445554444444444
No 104
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=46.93 E-value=16 Score=28.87 Aligned_cols=12 Identities=17% Similarity=0.127 Sum_probs=4.7
Q ss_pred Hhhhccccccee
Q 038779 387 ILWINSCWRRLW 398 (420)
Q Consensus 387 ~~~~~~~~~~~~ 398 (420)
++.+....|+|.
T Consensus 16 ~~~~~~~~rRR~ 27 (130)
T PF12273_consen 16 LFLFYCHNRRRR 27 (130)
T ss_pred HHHHHHHHHHHh
Confidence 334444434333
No 105
>PTZ00370 STEVOR; Provisional
Probab=46.80 E-value=13 Score=33.34 Aligned_cols=29 Identities=28% Similarity=0.181 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhhcccccceeeeeh
Q 038779 374 AASYVTFILGLLAILWINSCWRRLWFYYV 402 (420)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (420)
++.|++++.+|++++|++.++||+.-|.-
T Consensus 260 aalvllil~vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 260 AALVLLILAVVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 33334444444555555555555544433
No 106
>PTZ00046 rifin; Provisional
Probab=45.30 E-value=21 Score=33.31 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhccccc
Q 038779 380 FILGLLAILWINSCWR 395 (420)
Q Consensus 380 ~~~~~~~~~~~~~~~~ 395 (420)
++++|++.+..++|++
T Consensus 328 VLIMvIIYLILRYRRK 343 (358)
T PTZ00046 328 VLIMVIIYLILRYRRK 343 (358)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 3333344344444433
No 107
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=43.81 E-value=7.7 Score=29.93 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhcccccceeee
Q 038779 378 VTFILGLLAILWINSCWRRLWFY 400 (420)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~ 400 (420)
++++.++..++++++++|++.|.
T Consensus 89 ~lVl~llsg~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 89 VLVLALLSGFLVWRRCRRREKFT 111 (129)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHhhhhccccCC
Confidence 33333344556666666665553
No 108
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=43.45 E-value=23 Score=32.97 Aligned_cols=15 Identities=7% Similarity=0.169 Sum_probs=5.8
Q ss_pred HHHHHHHhhhccccc
Q 038779 381 ILGLLAILWINSCWR 395 (420)
Q Consensus 381 ~~~~~~~~~~~~~~~ 395 (420)
+++|++.+..++|++
T Consensus 324 LIMvIIYLILRYRRK 338 (353)
T TIGR01477 324 LIMVIIYLILRYRRK 338 (353)
T ss_pred HHHHHHHHHHHhhhc
Confidence 333333333444333
No 109
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=43.42 E-value=13 Score=43.91 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=26.7
Q ss_pred ECcCCcccccCChhhhCCCCCcEEecccCccc
Q 038779 67 YLRKNGFNGPIPNALFRSSELLTLDLTDNHFS 98 (420)
Q Consensus 67 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 98 (420)
||++|+|+.+.+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888777778888888999999888875
No 110
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=41.92 E-value=11 Score=22.65 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=5.9
Q ss_pred HHHhhhcccccce
Q 038779 385 LAILWINSCWRRL 397 (420)
Q Consensus 385 ~~~~~~~~~~~~~ 397 (420)
++..+.+++|..|
T Consensus 24 iva~~iYRKw~aR 36 (43)
T PF08114_consen 24 IVALFIYRKWQAR 36 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3334445555443
No 111
>PF14979 TMEM52: Transmembrane 52
Probab=36.74 E-value=57 Score=26.02 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhccccccee
Q 038779 368 SFNWSFAASYVTFILGLLAILWINSCWRRLW 398 (420)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (420)
+.+|.++++++.+++..+...+++.+|.+|.
T Consensus 20 WyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 20 WYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444444444444444455555655665554
No 112
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=34.62 E-value=50 Score=23.16 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHhhhccccccee
Q 038779 373 FAASYVTFILGLLAILWINSCWRRLW 398 (420)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (420)
+++++++++++++.++.+...+|+..
T Consensus 3 i~~~~~g~~~ll~~v~~~~~~~rr~~ 28 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIVCFRRCK 28 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTT--
T ss_pred EehHHHHHHHHHHhheeEEEEEeeEc
Confidence 34444445555555556555555544
No 113
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=34.13 E-value=34 Score=27.36 Aligned_cols=14 Identities=21% Similarity=0.244 Sum_probs=5.4
Q ss_pred HHHHhhhcccccce
Q 038779 384 LLAILWINSCWRRL 397 (420)
Q Consensus 384 ~~~~~~~~~~~~~~ 397 (420)
+++.+-+...|+++
T Consensus 23 l~cgiGcvwhwkhr 36 (158)
T PF11770_consen 23 LLCGIGCVWHWKHR 36 (158)
T ss_pred HHHhcceEEEeecc
Confidence 33333333334444
No 114
>PRK00523 hypothetical protein; Provisional
Probab=33.09 E-value=28 Score=24.05 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHhhhcccccceee
Q 038779 373 FAASYVTFILGLLAILWINSCWRRLWF 399 (420)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (420)
++++++++++.+++.+++-+++-.+|+
T Consensus 8 I~l~i~~li~G~~~Gffiark~~~k~l 34 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSKKMFKKQI 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544443
No 115
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.73 E-value=29 Score=18.35 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=6.2
Q ss_pred CCCCEEEcccC
Q 038779 14 PVLAVMIMSKN 24 (420)
Q Consensus 14 ~~L~~L~Ls~n 24 (420)
++|+.|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 116
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=32.56 E-value=48 Score=28.35 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhcccccceee
Q 038779 377 YVTFILGLLAILWINSCWRRLWF 399 (420)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~ 399 (420)
++++++.++++-..+|+.+.||.
T Consensus 186 ~~i~~i~~i~i~~irR~i~lky~ 208 (215)
T PHA02947 186 VIILIIFVIAICSIKRKINLKYR 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHheeeEe
Confidence 33344444445556666666654
No 117
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=31.56 E-value=45 Score=28.65 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhcccccceeee
Q 038779 379 TFILGLLAILWINSCWRRLWFY 400 (420)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~ 400 (420)
++++.++++-..+|+.+.||.+
T Consensus 196 i~~i~vv~i~~irR~i~lkYrY 217 (226)
T PHA02662 196 VTVLGVVAVSLLRRALRIRFRY 217 (226)
T ss_pred HHHHHHHHHHHHHHHhheeeee
Confidence 3344445555666666666654
No 118
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.77 E-value=51 Score=23.69 Aligned_cols=12 Identities=17% Similarity=0.108 Sum_probs=4.7
Q ss_pred HHHHhhhccccc
Q 038779 384 LLAILWINSCWR 395 (420)
Q Consensus 384 ~~~~~~~~~~~~ 395 (420)
++.++++.+|.|
T Consensus 49 ilwfvCC~kRkr 60 (94)
T PF05393_consen 49 ILWFVCCKKRKR 60 (94)
T ss_pred HHHHHHHHHhhh
Confidence 333344443333
No 119
>PRK01844 hypothetical protein; Provisional
Probab=30.65 E-value=31 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhccccccee
Q 038779 374 AASYVTFILGLLAILWINSCWRRLW 398 (420)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (420)
++.++++++.+++.+++-+++-.+|
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~k~ 32 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMMNY 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555554444
No 120
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=30.48 E-value=89 Score=20.08 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=13.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccc
Q 038779 371 WSFAASYVTFILGLLAILWINSCW 394 (420)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~ 394 (420)
+.+.++++++++.+.+++|..+.-
T Consensus 6 ~LIpiSl~l~~~~l~~f~Wavk~G 29 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLWSLKSG 29 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 445555555555556666655443
No 121
>PF15102 TMEM154: TMEM154 protein family
Probab=29.15 E-value=27 Score=27.97 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcccccceee
Q 038779 370 NWSFAASYVTFILGLLAILWINSCWRRLWF 399 (420)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (420)
++.+++-.++++++++.+++...+.|||.-
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeeccc
Confidence 344555567777777888777777765554
No 122
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=27.29 E-value=99 Score=19.25 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccc
Q 038779 371 WSFAASYVTFILGLLAILWINSCW 394 (420)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~ 394 (420)
+.+.++++++++.+.+++|..+.-
T Consensus 5 ~lip~sl~l~~~~l~~f~Wavk~G 28 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLWAVKSG 28 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 334555555555555555554443
No 123
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=26.87 E-value=1.7e+02 Score=24.41 Aligned_cols=7 Identities=29% Similarity=0.695 Sum_probs=3.3
Q ss_pred CCCCccc
Q 038779 341 SCNSAEE 347 (420)
Q Consensus 341 ~C~~~~~ 347 (420)
.|..|..
T Consensus 54 ~C~~~~~ 60 (201)
T KOG4671|consen 54 SCRKPAS 60 (201)
T ss_pred eecCcCC
Confidence 4554443
No 124
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=26.75 E-value=21 Score=32.40 Aligned_cols=19 Identities=16% Similarity=-0.179 Sum_probs=0.0
Q ss_pred HHHHhhhcccccceeeeeh
Q 038779 384 LLAILWINSCWRRLWFYYV 402 (420)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~ 402 (420)
+++++++++|+|++....+
T Consensus 162 A~iIa~icyrrkR~GK~~~ 180 (290)
T PF05454_consen 162 AGIIACICYRRKRKGKMSL 180 (290)
T ss_dssp -------------------
T ss_pred HHHHHHHhhhhhhcccccc
Confidence 3344444455666655555
No 125
>PHA02955 hypothetical protein; Provisional
Probab=26.61 E-value=60 Score=27.83 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=9.5
Q ss_pred HHHhhhcccccceeee
Q 038779 385 LAILWINSCWRRLWFY 400 (420)
Q Consensus 385 ~~~~~~~~~~~~~~~~ 400 (420)
+++.+.+|+.+.||.+
T Consensus 194 v~l~yikR~i~~ky~y 209 (213)
T PHA02955 194 IILGYIYRTVRIKYIY 209 (213)
T ss_pred HHHHHHHHHheeeEee
Confidence 3356666666666643
No 126
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=25.97 E-value=63 Score=23.04 Aligned_cols=15 Identities=0% Similarity=-0.071 Sum_probs=5.9
Q ss_pred hhhhhhhHHHHHHHH
Q 038779 367 VSFNWSFAASYVTFI 381 (420)
Q Consensus 367 ~~~~~~~~~~~~~~~ 381 (420)
.++++..+.++++++
T Consensus 15 ~~yyiiA~gga~llL 29 (87)
T PF11980_consen 15 YWYYIIAMGGALLLL 29 (87)
T ss_pred eeeHHHhhccHHHHH
Confidence 344443333333333
No 127
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=24.56 E-value=1.2e+02 Score=23.67 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=5.5
Q ss_pred HHHhhhcccccce
Q 038779 385 LAILWINSCWRRL 397 (420)
Q Consensus 385 ~~~~~~~~~~~~~ 397 (420)
.+++++.++|.+|
T Consensus 116 s~~~~~~yr~~r~ 128 (139)
T PHA03099 116 TCCLLSVYRFTRR 128 (139)
T ss_pred HHHHHhhheeeec
Confidence 3334444444444
No 128
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=22.89 E-value=87 Score=21.80 Aligned_cols=9 Identities=11% Similarity=0.091 Sum_probs=4.3
Q ss_pred eehhhccce
Q 038779 400 YYVDACIDS 408 (420)
Q Consensus 400 ~~~~~~~~~ 408 (420)
++-+..++|
T Consensus 65 YckRSlqew 73 (74)
T PF11857_consen 65 YCKRSLQEW 73 (74)
T ss_pred EEecchhhc
Confidence 333555555
No 129
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.27 E-value=49 Score=30.32 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcccccceeee
Q 038779 370 NWSFAASYVTFILGLLAILWINSCWRRLWFY 400 (420)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (420)
...+..++++++++|++++.++.-||.|...
T Consensus 255 ~t~I~aSiiaIliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 255 TTAIIASIIAILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777777778887777766543
No 130
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.23 E-value=71 Score=31.16 Aligned_cols=67 Identities=27% Similarity=0.274 Sum_probs=39.8
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccc---cCCCCCcEEeCcCCccccCCCccc
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQL---CELQKLGIMDLSHNRFNGSIPSCL 153 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~p~~l 153 (420)
+.+++++++.|.+....|-.+..-.+ -+.+..|.++..+-..+ ..-..+.+++|+.|.....+|..+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~ 234 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTL 234 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHH
Confidence 56788888888887666554432211 15566666553211111 112358899999998887777543
No 131
>PRK14762 membrane protein; Provisional
Probab=22.01 E-value=1.4e+02 Score=15.78 Aligned_cols=17 Identities=12% Similarity=0.399 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHHHHHH
Q 038779 371 WSFAASYVTFILGLLAI 387 (420)
Q Consensus 371 ~~~~~~~~~~~~~~~~~ 387 (420)
|.+++.+++++.++..+
T Consensus 6 w~i~iifligllvvtgv 22 (27)
T PRK14762 6 WAVLIIFLIGLLVVTGV 22 (27)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544443
No 132
>PF15179 Myc_target_1: Myc target protein 1
Probab=21.12 E-value=1.2e+02 Score=25.32 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=9.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhh
Q 038779 369 FNWSFAASYVTFILGLLAILWI 390 (420)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~ 390 (420)
|.+.+++++++++++.+.+.|.
T Consensus 25 F~vSm~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 25 FCVSMAIGLVIGALIWALLTWL 46 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 133
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.64 E-value=1.2e+02 Score=23.71 Aligned_cols=25 Identities=12% Similarity=0.184 Sum_probs=13.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhc
Q 038779 366 MVSFNWSFAASYVTFILGLLAILWIN 391 (420)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (420)
...+++++.+++++++ +++.+++.+
T Consensus 66 i~~Ii~gv~aGvIg~I-lli~y~irR 90 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGII-LLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred eeehhHHHHHHHHHHH-HHHHHHHHH
Confidence 3445566666665544 455555543
Done!