Query 038779
Match_columns 420
No_of_seqs 347 out of 3644
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 04:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.5E-43 3.3E-47 360.7 28.5 342 2-346 380-752 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 9.6E-40 3.3E-44 302.7 20.4 258 14-342 50-312 (313)
3 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-37 3.9E-42 325.8 24.8 336 2-353 186-599 (844)
4 3v47_A TOLL-like receptor 5B a 100.0 1.4E-37 4.7E-42 303.6 22.4 324 14-337 30-412 (455)
5 3rgz_A Protein brassinosteroid 100.0 3.4E-37 1.2E-41 319.2 24.1 328 2-334 306-718 (768)
6 2id5_A Lingo-1, leucine rich r 100.0 1.9E-36 6.7E-41 297.2 22.3 304 5-334 25-334 (477)
7 1ogq_A PGIP-2, polygalacturona 100.0 6.6E-37 2.3E-41 283.6 16.8 241 2-313 62-307 (313)
8 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-35 1.3E-39 297.9 30.0 347 5-353 45-618 (635)
9 2id5_A Lingo-1, leucine rich r 100.0 3.4E-36 1.2E-40 295.5 18.0 313 2-337 44-360 (477)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-35 6.4E-40 298.9 23.1 117 221-337 444-562 (606)
11 3t6q_A CD180 antigen; protein- 100.0 1.9E-35 6.5E-40 298.8 21.7 279 10-337 274-564 (606)
12 4eco_A Uncharacterized protein 100.0 1.6E-35 5.5E-40 300.0 19.6 324 4-335 237-602 (636)
13 3v47_A TOLL-like receptor 5B a 100.0 1.4E-34 4.7E-39 282.4 22.6 315 16-334 12-385 (455)
14 3o6n_A APL1; leucine-rich repe 100.0 2.6E-34 8.8E-39 274.8 23.7 312 12-336 43-355 (390)
15 3t6q_A CD180 antigen; protein- 100.0 1E-33 3.6E-38 286.1 25.9 145 6-152 27-172 (606)
16 2z63_A TOLL-like receptor 4, v 100.0 4E-34 1.4E-38 287.0 21.5 330 6-337 22-535 (570)
17 3oja_B Anopheles plasmodium-re 100.0 6E-34 2.1E-38 286.8 22.8 311 13-336 50-361 (597)
18 4eco_A Uncharacterized protein 100.0 4.8E-34 1.6E-38 289.2 22.2 321 2-332 195-578 (636)
19 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-33 5.5E-38 288.5 26.0 331 2-337 234-626 (680)
20 4ecn_A Leucine-rich repeat pro 100.0 4.9E-34 1.7E-38 294.7 21.2 322 4-334 479-841 (876)
21 2z66_A Variable lymphocyte rec 100.0 4.5E-34 1.5E-38 264.0 17.1 240 5-315 21-266 (306)
22 3zyi_A Leucine-rich repeat-con 100.0 5.2E-33 1.8E-37 270.8 23.9 238 6-315 69-308 (452)
23 3zyj_A Leucine-rich repeat-con 100.0 4.7E-33 1.6E-37 270.2 22.9 237 6-314 58-296 (440)
24 2ft3_A Biglycan; proteoglycan, 100.0 1E-32 3.6E-37 257.8 24.0 273 5-334 18-308 (332)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.6E-33 1.9E-37 278.1 23.7 320 6-336 46-513 (562)
26 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-32 7.1E-37 276.6 28.0 326 5-333 25-486 (606)
27 3o6n_A APL1; leucine-rich repe 100.0 4.8E-33 1.6E-37 266.0 21.6 313 5-336 59-377 (390)
28 1xku_A Decorin; proteoglycan, 100.0 1.7E-32 5.9E-37 256.1 23.9 264 15-335 32-308 (330)
29 2ft3_A Biglycan; proteoglycan, 100.0 3.3E-32 1.1E-36 254.4 25.0 273 5-331 47-331 (332)
30 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-33 2E-37 275.5 20.9 112 222-336 371-484 (520)
31 3zyi_A Leucine-rich repeat-con 100.0 2E-32 6.8E-37 266.7 23.9 250 15-337 55-307 (452)
32 1ozn_A Reticulon 4 receptor; N 100.0 4.2E-33 1.4E-37 254.8 17.6 248 16-334 13-262 (285)
33 4ecn_A Leucine-rich repeat pro 100.0 9.1E-33 3.1E-37 285.3 21.9 319 2-332 437-818 (876)
34 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-32 7.1E-37 286.1 24.0 305 5-312 18-377 (844)
35 3zyj_A Leucine-rich repeat-con 100.0 5.5E-32 1.9E-36 262.7 24.2 249 15-336 44-295 (440)
36 2z81_A CD282 antigen, TOLL-lik 100.0 1E-32 3.5E-37 275.5 19.6 145 5-151 19-166 (549)
37 3oja_B Anopheles plasmodium-re 100.0 1.9E-32 6.6E-37 275.8 21.7 314 5-337 65-384 (597)
38 4g8a_A TOLL-like receptor 4; l 100.0 5.1E-32 1.7E-36 274.9 23.9 337 2-339 64-612 (635)
39 1xku_A Decorin; proteoglycan, 100.0 3.1E-31 1E-35 247.7 26.3 273 5-330 45-329 (330)
40 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-31 4.7E-36 274.1 25.3 323 5-330 18-363 (680)
41 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-31 4.1E-36 266.1 23.1 320 5-333 14-434 (520)
42 2z80_A TOLL-like receptor 2, v 100.0 1.2E-32 4.3E-37 259.5 14.2 263 5-316 45-320 (353)
43 4fcg_A Uncharacterized protein 100.0 1.4E-31 4.8E-36 249.3 21.0 226 13-311 80-315 (328)
44 2z66_A Variable lymphocyte rec 100.0 1.1E-31 3.7E-36 248.0 20.0 249 16-336 9-264 (306)
45 1ozn_A Reticulon 4 receptor; N 100.0 8.6E-32 3E-36 246.1 17.6 240 5-315 25-266 (285)
46 2z63_A TOLL-like receptor 4, v 100.0 6.2E-31 2.1E-35 263.8 25.4 153 16-171 9-166 (570)
47 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-30 5.5E-35 260.2 26.4 313 13-332 30-462 (562)
48 2z81_A CD282 antigen, TOLL-lik 100.0 8.7E-32 3E-36 268.8 17.1 165 2-167 38-209 (549)
49 2z80_A TOLL-like receptor 2, v 100.0 8.5E-32 2.9E-36 253.8 12.4 277 11-337 28-318 (353)
50 4fmz_A Internalin; leucine ric 100.0 7.8E-30 2.7E-34 239.8 23.2 300 12-332 42-345 (347)
51 2z62_A TOLL-like receptor 4, v 100.0 5.1E-30 1.7E-34 233.2 18.6 230 18-319 11-246 (276)
52 4fcg_A Uncharacterized protein 100.0 5E-30 1.7E-34 238.8 17.7 211 5-287 95-315 (328)
53 3oja_A Leucine-rich immune mol 100.0 5.4E-31 1.8E-35 258.3 11.6 244 13-337 33-286 (487)
54 1o6v_A Internalin A; bacterial 100.0 5.1E-29 1.8E-33 243.6 24.5 306 6-334 61-389 (466)
55 3o53_A Protein LRIM1, AGAP0063 100.0 3.2E-31 1.1E-35 246.0 7.1 244 10-334 30-276 (317)
56 1wwl_A Monocyte differentiatio 100.0 5.8E-31 2E-35 243.7 8.7 132 11-147 40-187 (312)
57 1wwl_A Monocyte differentiatio 100.0 6.2E-32 2.1E-36 250.2 1.8 234 5-311 56-310 (312)
58 3bz5_A Internalin-J, INLJ; leu 100.0 9.3E-29 3.2E-33 240.3 22.7 265 3-315 31-304 (457)
59 4fmz_A Internalin; leucine ric 100.0 4.2E-28 1.4E-32 228.0 22.8 284 6-310 59-346 (347)
60 2z62_A TOLL-like receptor 4, v 100.0 2.4E-28 8.3E-33 222.1 20.1 216 5-288 21-239 (276)
61 2o6q_A Variable lymphocyte rec 100.0 7.5E-28 2.6E-32 218.1 22.6 208 39-316 17-224 (270)
62 3bz5_A Internalin-J, INLJ; leu 100.0 6.1E-28 2.1E-32 234.6 22.8 283 2-333 54-352 (457)
63 3o53_A Protein LRIM1, AGAP0063 100.0 1.4E-29 4.7E-34 234.9 10.8 242 14-336 10-253 (317)
64 1jl5_A Outer protein YOPM; leu 100.0 1.5E-27 5E-32 231.7 21.4 100 61-169 131-230 (454)
65 3oja_A Leucine-rich immune mol 100.0 8.4E-29 2.9E-33 242.7 12.0 226 30-336 22-253 (487)
66 1p9a_G Platelet glycoprotein I 100.0 3.1E-27 1.1E-31 216.0 20.6 204 36-313 8-211 (290)
67 2o6q_A Variable lymphocyte rec 100.0 5.6E-27 1.9E-31 212.3 21.6 203 14-287 16-219 (270)
68 1o6v_A Internalin A; bacterial 100.0 5.4E-27 1.9E-31 229.2 21.4 301 12-334 44-367 (466)
69 1p9a_G Platelet glycoprotein I 99.9 6.3E-27 2.2E-31 213.9 19.5 204 59-336 8-211 (290)
70 1jl5_A Outer protein YOPM; leu 99.9 2.3E-26 7.9E-31 223.3 22.1 143 14-170 131-273 (454)
71 3rfs_A Internalin B, repeat mo 99.9 1.3E-26 4.5E-31 210.1 16.1 221 14-315 19-240 (272)
72 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-25 5.6E-30 224.0 25.1 248 6-315 55-302 (622)
73 3m19_A Variable lymphocyte rec 99.9 3.7E-26 1.3E-30 204.6 18.4 215 62-348 15-235 (251)
74 3rfs_A Internalin B, repeat mo 99.9 1.1E-26 3.7E-31 210.6 15.0 204 38-315 19-223 (272)
75 2xwt_C Thyrotropin receptor; s 99.9 2.9E-26 9.9E-31 203.8 15.6 204 26-307 23-236 (239)
76 2xwt_C Thyrotropin receptor; s 99.9 4.5E-26 1.5E-30 202.5 15.0 85 62-146 32-118 (239)
77 3g06_A SSPH2 (leucine-rich rep 99.9 5.3E-25 1.8E-29 220.3 22.8 234 5-297 75-308 (622)
78 3goz_A Leucine-rich repeat-con 99.9 1.5E-27 5.3E-32 225.3 3.5 247 2-312 10-299 (362)
79 4glp_A Monocyte differentiatio 99.9 8E-26 2.7E-30 208.9 13.9 223 39-310 65-307 (310)
80 2ca6_A RAN GTPase-activating p 99.9 1.5E-27 5.2E-32 227.5 1.4 241 6-314 24-320 (386)
81 4glp_A Monocyte differentiatio 99.9 4.6E-26 1.6E-30 210.6 11.1 223 15-287 65-308 (310)
82 1h6u_A Internalin H; cell adhe 99.9 1E-24 3.5E-29 201.2 17.4 211 17-313 22-233 (308)
83 3goz_A Leucine-rich repeat-con 99.9 1.7E-26 5.8E-31 218.2 4.9 254 18-334 2-298 (362)
84 3m19_A Variable lymphocyte rec 99.9 3.2E-24 1.1E-28 192.0 18.4 128 16-146 16-144 (251)
85 1h6u_A Internalin H; cell adhe 99.9 1.1E-24 3.7E-29 201.0 15.4 194 10-287 37-231 (308)
86 1z7x_W Ribonuclease inhibitor; 99.9 3.3E-27 1.1E-31 230.5 -4.1 309 10-332 24-382 (461)
87 4ay9_X Follicle-stimulating ho 99.9 4.9E-24 1.7E-28 200.3 17.0 243 17-334 12-259 (350)
88 4ay9_X Follicle-stimulating ho 99.9 2.9E-24 1E-28 201.9 14.4 227 5-307 23-256 (350)
89 1z7x_W Ribonuclease inhibitor; 99.9 9.6E-27 3.3E-31 227.2 -2.9 274 15-331 86-409 (461)
90 2ast_B S-phase kinase-associat 99.9 4.6E-25 1.6E-29 206.2 8.1 222 15-307 48-282 (336)
91 2ast_B S-phase kinase-associat 99.9 7.6E-26 2.6E-30 211.6 1.3 229 14-315 70-311 (336)
92 2ca6_A RAN GTPase-activating p 99.9 6.4E-26 2.2E-30 216.2 0.8 254 16-335 11-318 (386)
93 2o6s_A Variable lymphocyte rec 99.9 7.9E-23 2.7E-27 177.5 15.5 128 17-147 10-138 (208)
94 2o6s_A Variable lymphocyte rec 99.9 9.3E-23 3.2E-27 177.1 14.5 140 5-146 21-161 (208)
95 2v9t_B SLIT homolog 2 protein 99.9 7.3E-23 2.5E-27 179.2 12.4 91 224-314 79-169 (220)
96 2xot_A Amphoterin-induced prot 99.9 1.3E-22 4.3E-27 191.5 12.3 90 224-313 111-205 (361)
97 2v70_A SLIT-2, SLIT homolog 2 99.9 1.5E-22 5.1E-27 177.2 11.3 157 88-315 14-171 (220)
98 3e6j_A Variable lymphocyte rec 99.9 4.4E-22 1.5E-26 175.4 14.3 186 87-346 21-212 (229)
99 3cvr_A Invasion plasmid antige 99.9 4.5E-22 1.5E-26 196.9 15.7 94 39-146 60-153 (571)
100 3cvr_A Invasion plasmid antige 99.9 6.9E-22 2.4E-26 195.5 15.6 187 15-296 60-253 (571)
101 2v9t_B SLIT homolog 2 protein 99.9 2.2E-21 7.6E-26 169.7 14.7 140 5-146 25-165 (220)
102 1h6t_A Internalin B; cell adhe 99.9 1.2E-21 4.2E-26 179.0 12.4 82 224-311 133-214 (291)
103 2xot_A Amphoterin-induced prot 99.9 3.7E-21 1.3E-25 181.4 14.3 128 17-147 21-150 (361)
104 1h6t_A Internalin B; cell adhe 99.9 8E-21 2.8E-25 173.5 15.7 190 15-288 25-215 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.9 8.3E-21 2.8E-25 166.1 14.9 142 5-148 25-168 (220)
106 1m9s_A Internalin B; cell inva 99.8 5.7E-21 2E-25 190.9 14.0 192 14-289 21-213 (605)
107 3e6j_A Variable lymphocyte rec 99.8 1.8E-20 6.1E-25 165.0 14.9 142 4-148 32-174 (229)
108 1m9s_A Internalin B; cell inva 99.8 1.1E-20 3.8E-25 188.8 15.1 180 10-271 39-219 (605)
109 1dce_A Protein (RAB geranylger 99.8 1.8E-23 6.3E-28 207.7 -6.2 38 11-49 346-383 (567)
110 1xeu_A Internalin C; cellular 99.8 1E-20 3.6E-25 170.1 6.9 123 13-146 18-141 (263)
111 1xeu_A Internalin C; cellular 99.8 4E-20 1.4E-24 166.3 10.2 170 60-312 18-187 (263)
112 1w8a_A SLIT protein; signaling 99.8 1.1E-19 3.8E-24 155.4 12.4 92 224-315 53-144 (192)
113 4ezg_A Putative uncharacterize 99.8 1.3E-19 4.3E-24 155.8 12.3 83 224-310 111-194 (197)
114 4ezg_A Putative uncharacterize 99.8 2.2E-19 7.5E-24 154.3 12.8 59 224-286 135-194 (197)
115 3sb4_A Hypothetical leucine ri 99.8 1.1E-19 3.6E-24 169.3 10.7 266 4-315 13-315 (329)
116 1dce_A Protein (RAB geranylger 99.8 4.3E-22 1.5E-26 197.8 -6.4 90 224-316 462-552 (567)
117 1w8a_A SLIT protein; signaling 99.8 5.1E-19 1.7E-23 151.3 13.1 131 17-150 11-143 (192)
118 3ogk_B Coronatine-insensitive 99.8 2E-21 6.8E-26 195.5 -2.3 150 11-162 161-350 (592)
119 4b8c_D Glucose-repressible alc 99.8 1.9E-20 6.4E-25 191.7 4.7 96 54-153 216-312 (727)
120 4b8c_D Glucose-repressible alc 99.8 5.1E-20 1.7E-24 188.5 5.1 137 16-155 193-338 (727)
121 2ell_A Acidic leucine-rich nuc 99.8 7.2E-19 2.5E-23 147.0 11.0 137 12-151 22-164 (168)
122 2wfh_A SLIT homolog 2 protein 99.8 1.2E-18 4.3E-23 148.9 10.4 91 224-314 53-143 (193)
123 2je0_A Acidic leucine-rich nuc 99.8 1.2E-18 3.9E-23 142.7 8.1 128 13-142 16-149 (149)
124 2wfh_A SLIT homolog 2 protein 99.8 7.3E-18 2.5E-22 144.1 13.0 127 17-147 13-140 (193)
125 3ogk_B Coronatine-insensitive 99.7 6.3E-20 2.2E-24 184.6 -1.1 263 6-312 235-528 (592)
126 2o6r_A Variable lymphocyte rec 99.7 1.7E-17 5.7E-22 139.9 13.4 132 16-150 9-141 (177)
127 3sb4_A Hypothetical leucine ri 99.7 1.3E-17 4.6E-22 155.0 12.5 215 13-304 48-328 (329)
128 2ell_A Acidic leucine-rich nuc 99.7 1.5E-17 5.3E-22 138.9 11.5 62 225-286 95-160 (168)
129 2p1m_B Transport inhibitor res 99.7 2.4E-19 8.1E-24 180.5 -1.8 295 12-332 128-518 (594)
130 2je0_A Acidic leucine-rich nuc 99.7 3E-17 1E-21 134.2 9.8 59 86-146 18-77 (149)
131 2o6r_A Variable lymphocyte rec 99.7 8.8E-17 3E-21 135.5 12.9 92 224-315 51-142 (177)
132 1a9n_A U2A', U2A'; complex (nu 99.7 4E-17 1.4E-21 137.4 9.4 133 9-146 14-153 (176)
133 2p1m_B Transport inhibitor res 99.7 4.3E-19 1.5E-23 178.5 -3.5 308 11-332 102-493 (594)
134 4fdw_A Leucine rich hypothetic 99.7 1.3E-15 4.5E-20 144.8 20.3 240 13-311 112-359 (401)
135 4fdw_A Leucine rich hypothetic 99.7 1.2E-15 4.2E-20 145.0 18.9 248 9-310 131-383 (401)
136 3g39_A Variable lymphocyte rec 99.7 1.3E-16 4.5E-21 133.3 9.8 96 224-319 29-124 (170)
137 1a9n_A U2A', U2A'; complex (nu 99.6 6.9E-16 2.4E-20 129.8 9.0 83 59-145 17-100 (176)
138 2r9u_A Variable lymphocyte rec 99.6 7.6E-16 2.6E-20 129.1 8.9 96 224-319 32-127 (174)
139 1ds9_A Outer arm dynein; leuci 99.6 5E-18 1.7E-22 145.9 -4.8 61 225-287 93-154 (198)
140 1ds9_A Outer arm dynein; leuci 99.6 1.1E-17 3.9E-22 143.7 -3.0 132 80-286 43-185 (198)
141 3g39_A Variable lymphocyte rec 99.6 2.3E-15 7.9E-20 125.7 11.1 104 41-146 12-115 (170)
142 2r9u_A Variable lymphocyte rec 99.6 5.9E-15 2E-19 123.7 11.1 104 41-146 15-118 (174)
143 3un9_A NLR family member X1; l 99.5 8.6E-16 2.9E-20 144.7 -4.1 186 37-286 71-283 (372)
144 2ifg_A High affinity nerve gro 99.5 1.1E-13 3.7E-18 129.5 9.3 90 224-314 30-120 (347)
145 3un9_A NLR family member X1; l 99.5 1.8E-15 6.3E-20 142.4 -3.6 87 60-146 71-168 (372)
146 4fs7_A Uncharacterized protein 99.4 5.9E-12 2E-16 119.8 20.2 288 9-307 66-376 (394)
147 2ifg_A High affinity nerve gro 99.4 3.8E-13 1.3E-17 125.8 10.3 104 17-123 11-117 (347)
148 4fs7_A Uncharacterized protein 99.2 2.6E-10 8.9E-15 108.4 15.5 239 29-302 153-393 (394)
149 4gt6_A Cell surface protein; l 99.2 1.2E-09 4.2E-14 103.7 19.6 268 9-309 58-369 (394)
150 4gt6_A Cell surface protein; l 99.2 3E-09 1E-13 101.0 20.5 296 26-331 51-368 (394)
151 2ra8_A Uncharacterized protein 99.1 6.6E-11 2.3E-15 110.4 5.0 165 77-308 164-341 (362)
152 2ra8_A Uncharacterized protein 99.1 5.6E-11 1.9E-15 110.9 3.6 184 32-284 133-341 (362)
153 4h09_A Hypothetical leucine ri 98.9 1.2E-07 4.1E-12 89.4 19.8 81 224-306 262-342 (379)
154 4h09_A Hypothetical leucine ri 98.8 9.8E-07 3.3E-11 83.1 21.8 292 10-328 42-341 (379)
155 1io0_A Tropomodulin; LRR prote 98.7 2.2E-09 7.5E-14 90.5 0.6 116 31-146 29-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 3.8E-09 1.3E-13 89.0 0.9 114 9-122 31-164 (185)
157 3rw6_A Nuclear RNA export fact 98.6 3.5E-09 1.2E-13 93.8 0.0 80 59-139 168-257 (267)
158 3rw6_A Nuclear RNA export fact 98.5 1.1E-07 3.8E-12 84.2 6.8 103 11-115 138-257 (267)
159 3e4g_A ATP synthase subunit S, 98.1 9.9E-07 3.4E-11 72.5 3.0 83 38-120 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.1 7.2E-07 2.4E-11 73.4 2.0 84 225-308 61-150 (176)
161 3rfe_A Platelet glycoprotein I 98.0 5.2E-06 1.8E-10 65.1 5.0 60 253-314 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 2.2E-05 7.4E-10 65.8 1.5 114 33-146 36-170 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 5.1E-05 1.7E-09 63.5 1.6 111 11-121 38-169 (197)
164 3rfe_A Platelet glycoprotein I 97.2 0.00061 2.1E-08 53.1 6.3 57 228-286 11-68 (130)
165 2ks1_B Epidermal growth factor 86.2 0.8 2.7E-05 27.4 3.3 27 369-395 13-39 (44)
166 2l2t_A Receptor tyrosine-prote 85.9 0.79 2.7E-05 27.4 3.2 28 368-395 11-38 (44)
167 2lz0_A Uncharacterized protein 77.7 5.2 0.00018 28.9 5.8 46 72-118 7-52 (100)
168 2lz0_A Uncharacterized protein 72.1 9.6 0.00033 27.4 5.9 46 49-95 7-53 (100)
169 2k1k_A Ephrin type-A receptor 65.6 6.1 0.00021 22.7 2.9 17 371-387 14-30 (38)
170 2klu_A T-cell surface glycopro 62.2 6.3 0.00022 25.5 2.7 26 372-397 13-38 (70)
171 2l9u_A Receptor tyrosine-prote 37.4 28 0.00095 19.2 2.3 20 373-392 12-31 (40)
172 2l34_A TYRO protein tyrosine k 22.0 1E+02 0.0036 16.9 3.0 18 373-390 12-29 (33)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.5e-43 Score=360.69 Aligned_cols=342 Identities=33% Similarity=0.471 Sum_probs=245.1
Q ss_pred ceecCCccccC--CCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCC
Q 038779 2 LSGHIPSWIGN--FPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIP 78 (420)
Q Consensus 2 ~~g~ip~~~~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~ 78 (420)
++|.+|..+.. +++|++|++++|.+++.+|..++++++|+.|++++|++++..|..+ .+++|++|++++|++++..|
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 34566666655 6677777777777777777777777777777777777777777777 77777777777777777777
Q ss_pred hhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccccc---
Q 038779 79 NALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTS--- 155 (420)
Q Consensus 79 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--- 155 (420)
..+..+++|++|++++|++++..|..|..+++|++|++++|++++.+|..++.+++|++|++++|++.+.+|..+..
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777765443
Q ss_pred ccccccCCcccccccccchhhccCCCCC-cccCcccccccCCCCCCCC------------------------CCcceEEE
Q 038779 156 VSFWSQGKNDLYGIELNLEWDLGAGAAG-TYDNSNLEMYLSNGAHGPP------------------------GQHVEVEF 210 (420)
Q Consensus 156 l~~l~~~~n~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~ 210 (420)
++.+++.+|.+.+......+........ ......+...........+ ........
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 619 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence 4456667776654322222211110000 0000000000000000000 00000000
Q ss_pred EeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCC
Q 038779 211 VTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVS 290 (420)
Q Consensus 211 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 290 (420)
... ........+++|+.|||++|++++.+|..++.+++|+.|+|++|+++|.+|..|+++++|++|||++|++++.+|
T Consensus 620 ~~g--~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 620 YGG--HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp EEE--ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ecc--cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 000 001122347889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCcCCcCCCCCCCCCCcc
Q 038779 291 PRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCGSIINKSCNSAE 346 (420)
Q Consensus 291 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~C~~~~ 346 (420)
..+..++.|++||+++|+++|.+|...+++++....+.|||.+||.|.. .|....
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred hHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 9999999999999999999999999999999999999999999999876 887544
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.6e-40 Score=302.72 Aligned_cols=258 Identities=33% Similarity=0.533 Sum_probs=242.1
Q ss_pred CCCCEEEcccCcccc--cCChhhhcCCCCCEEEccC-CcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcE
Q 038779 14 PVLAVMIMSKNRLEG--NIPPELSKFGGPLILDVSE-NCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLT 89 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~-n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 89 (420)
.+++.|+|++|.+++ .+|..|+++++|++|++++ |.+.+.+|..| .+++|++|++++|++++..|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 99999999999 9999999999999999999999999999999
Q ss_pred EecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCC-CCcEEeCcCCccccCCCcccccccccccCCccccc
Q 038779 90 LDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQ-KLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYG 168 (420)
Q Consensus 90 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~ 168 (420)
|+|++|.+++..|..|..+++|++|++++|++++.+|..+..++ +|+.|++++|++.+..|..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~------------- 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------------- 196 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-------------
Confidence 99999999999999999999999999999999999999999998 9999999999999888876654
Q ss_pred ccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCc
Q 038779 169 IELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGEL 248 (420)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 248 (420)
+. |+.|++++|.+++..|..|..+
T Consensus 197 -------------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 197 -------------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp -------------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTT
T ss_pred -------------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcC
Confidence 34 8999999999999999999999
Q ss_pred cCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCccccc
Q 038779 249 QNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYR 328 (420)
Q Consensus 249 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~ 328 (420)
++|+.|++++|.+++.+|. +..+++|++|++++|++++..|..+..+++|++|++++|++++.+|....++.++.+++.
T Consensus 221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence 9999999999999976665 888999999999999999999999999999999999999999999998889999999999
Q ss_pred CCcCCcCCCCCCCC
Q 038779 329 GNIHLCGSIINKSC 342 (420)
Q Consensus 329 ~n~~~c~~~~~~~C 342 (420)
+|+++||.|.. .|
T Consensus 300 ~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 300 NNKCLCGSPLP-AC 312 (313)
T ss_dssp SSSEEESTTSS-CC
T ss_pred CCCCccCCCCC-CC
Confidence 99999997754 46
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=325.85 Aligned_cols=336 Identities=21% Similarity=0.156 Sum_probs=241.2
Q ss_pred ceecCCccccCCCC------CCEEEcccCcccccCChhhhc--------------------------------------C
Q 038779 2 LSGHIPSWIGNFPV------LAVMIMSKNRLEGNIPPELSK--------------------------------------F 37 (420)
Q Consensus 2 ~~g~ip~~~~~l~~------L~~L~Ls~n~l~~~~p~~~~~--------------------------------------l 37 (420)
+++.+|..++.+++ |+.|++++|.+++..+..+.. .
T Consensus 186 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 34556666655554 888888888776655544432 2
Q ss_pred CCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEc
Q 038779 38 GGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLL 116 (420)
Q Consensus 38 ~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 116 (420)
++|+.|++++|.+.+..+..| .+++|++|++++|++++..|.+|.++++|++|+|++|.+++..|.+|.++++|++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 578888888888888888888 8888888888888888888888888888888888888888777888888888888888
Q ss_pred ccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCC
Q 038779 117 RGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSN 196 (420)
Q Consensus 117 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (420)
++|++++..+..|..+++|+.|++++|.+++ ++. +.+++.+.+..|++..++.... ....+.+..+.-.
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~-~~~L~~L~l~~N~l~~l~~~~~---------~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF-IPSIPDIFLSGNKLVTLPKINL---------TANLIHLSENRLE 414 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS-CCSCSEEEEESCCCCCCCCCCT---------TCCEEECCSCCCC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC-CCCcchhccCCCCccccccccc---------ccceeecccCccc
Confidence 8888887777788888888888888888863 332 5667777777777665432210 0011111111000
Q ss_pred CCCC-----CCCCcceEEEEeccCcc----ccCCccccCCCeEEccCCccc-----cCCCccccCccCCCEEecCCcccc
Q 038779 197 GAHG-----PPGQHVEVEFVTKNRNE----LYNGSNLDYMSGLDLSCNELT-----GGIPVEIGELQNVRSLNLSHNYLS 262 (420)
Q Consensus 197 ~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~ 262 (420)
..+. .......+.. ..+... ......+++|+.|++++|.++ +..+..|.++++|+.|+|++|+++
T Consensus 415 ~l~~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 415 NLDILYFLLRVPHLQILIL-NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp SSTTHHHHTTCTTCCEEEE-ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred cCchhhhhhcCCccceeeC-CCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence 0000 0001111222 111111 111233788999999999987 345567889999999999999999
Q ss_pred cccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCcCCcCCC-----
Q 038779 263 GSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCGSI----- 337 (420)
Q Consensus 263 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~----- 337 (420)
+.+|..|.++++|+.|+|++|++++..+..+. ++|++|++++|++++..|.. +..+..+++.+||+.|+++
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~~f~ 569 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELSTFI 569 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCCSHH
T ss_pred ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccHHHH
Confidence 88888999999999999999999987777766 88999999999999988864 5688899999999999543
Q ss_pred --------------CCCCCCCcccccccCC
Q 038779 338 --------------INKSCNSAEEILATTS 353 (420)
Q Consensus 338 --------------~~~~C~~~~~~~~~~~ 353 (420)
....|..|+...+...
T Consensus 570 ~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l 599 (844)
T 3j0a_A 570 NWLNHTNVTIAGPPADIYCVYPDSFSGVSL 599 (844)
T ss_dssp HHHHHTTTTTCCCGGGCCCSSCSSSCSCCT
T ss_pred HHHHhcCcccccccccCccCCchhhCCCcc
Confidence 3467988887655543
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-37 Score=303.60 Aligned_cols=324 Identities=21% Similarity=0.214 Sum_probs=236.2
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCccc-CCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEe
Q 038779 14 PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGN-MPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLD 91 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~-~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 91 (420)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+. .+..| ++++|++|++++|++++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 6788889998888887788888888899999988888744 45667 888888999988888888888888888899999
Q ss_pred cccCcccccCCc--CCCCCCCCcEEEcccccccccCCcc-ccCCCCCcEEeCcCCccccCCCccc---------------
Q 038779 92 LTDNHFSGRIPH--QINTLSNLRVLLLRGNYLQGPIPNQ-LCELQKLGIMDLSHNRFNGSIPSCL--------------- 153 (420)
Q Consensus 92 L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~p~~l--------------- 153 (420)
|++|.+++..+. .|..+++|++|+|++|++++..|.. +..+++|++|++++|++.+..|..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 988888864444 3888888888888888888776765 7888888888888888876666543
Q ss_pred ----------------------ccccccccCCcccccccccchhhccCC---------CC----CcccCcccccccCCCC
Q 038779 154 ----------------------TSVSFWSQGKNDLYGIELNLEWDLGAG---------AA----GTYDNSNLEMYLSNGA 198 (420)
Q Consensus 154 ----------------------~~l~~l~~~~n~l~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~ 198 (420)
.+++.|++++|++.......+...... .. ..+....+.......+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 245566666665543222111111000 00 0000000000000000
Q ss_pred CCCCCCcceEEEEeccCc---cccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCC
Q 038779 199 HGPPGQHVEVEFVTKNRN---ELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMT 275 (420)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 275 (420)
...............+.. .......+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|..|.++++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 000000111111111111 11123457899999999999999889999999999999999999998889999999999
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCC-CcCCccCcccccCCcCCcCCC
Q 038779 276 ESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDK-GQFAIFDESNYRGNIHLCGSI 337 (420)
Q Consensus 276 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 337 (420)
++|++++|++++..|..+..+++|++|++++|++++..+.. ..++.++.+++.+|++.|.++
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999988999999999999999999999877653 678899999999999999765
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-37 Score=319.16 Aligned_cols=328 Identities=30% Similarity=0.398 Sum_probs=183.6
Q ss_pred ceecCCccccCCCCCCEEEcccCcccccCChh-hhcCCCCCEEEccCCcCcccCCcCc-CCC-CCcEEECcCCcccccCC
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPE-LSKFGGPLILDVSENCLSGNMPSSL-NLS-SLKHLYLRKNGFNGPIP 78 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~-~L~~L~L~~n~l~~~~~ 78 (420)
++|.+|..|+++++|++|++++|.+++.+|.. +..+++|++|++++|.+++.+|..+ .++ +|++|++++|++++..|
T Consensus 306 l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECC
T ss_pred CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcC
Confidence 34566666666666666666666666555544 6666666666666666665555555 443 45555555554444444
Q ss_pred hhhhC--CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccc---
Q 038779 79 NALFR--SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCL--- 153 (420)
Q Consensus 79 ~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l--- 153 (420)
..+.. +++|++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|.+.+.+|..+
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 43333 3344444444444444444444444444444444444444444444444444444444444444443322
Q ss_pred ccccccccCCcccccccccchhhccCCCCCcccCcccccc-cCCCCCCCCC--CcceEEEEeccCc---cccCCccccCC
Q 038779 154 TSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMY-LSNGAHGPPG--QHVEVEFVTKNRN---ELYNGSNLDYM 227 (420)
Q Consensus 154 ~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~l~~L 227 (420)
.+++.|.+.+|++.......+.... .+..+.+..+ ..+..+...+ .....-....+.. .......+++|
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~-----~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCT-----NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCT-----TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred CCceEEEecCCcccCcCCHHHhcCC-----CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 2223333344433322111111100 0001111100 0000000000 0000000000000 00112235556
Q ss_pred CeEEccCCccccCCC-----------------------------------------------------------------
Q 038779 228 SGLDLSCNELTGGIP----------------------------------------------------------------- 242 (420)
Q Consensus 228 ~~L~Ls~n~l~~~~~----------------------------------------------------------------- 242 (420)
+.|++++|.+++.+|
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 666666665554444
Q ss_pred -----ccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-C
Q 038779 243 -----VEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-K 316 (420)
Q Consensus 243 -----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~ 316 (420)
..++.+++|+.|||++|+++|.+|..++++++|+.|+|++|++++.+|..++.++.|++|||++|+++|.+|. .
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 4455678899999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred CcCCccCcccccCCcCCc
Q 038779 317 GQFAIFDESNYRGNIHLC 334 (420)
Q Consensus 317 ~~~~~l~~~~~~~n~~~c 334 (420)
..++.++.+++++|+...
T Consensus 701 ~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 701 SALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GGCCCCSEEECCSSEEEE
T ss_pred hCCCCCCEEECcCCcccc
Confidence 778899999999998544
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=297.25 Aligned_cols=304 Identities=20% Similarity=0.157 Sum_probs=196.7
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+++..|..| ++++|++|+|++|+++...+..|.+
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 4676654 578999999999998888899999999999999999998889889 9999999999999998777777889
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcc---cccccccc
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSC---LTSVSFWS 160 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~l~ 160 (420)
+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+.. +.+++.|.
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 999999999999999888889999999999999999999888889999999999999999988544433 45666777
Q ss_pred cCCcccccccccchhhccCCCCCcccCcccccccC-CCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCcccc
Q 038779 161 QGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLS-NGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTG 239 (420)
Q Consensus 161 ~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 239 (420)
+.+|.+.......+... ..+..+.+..... ...+. ......+|+.|++++|++++
T Consensus 183 l~~n~i~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~-------------------~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRL-----YRLKVLEISHWPYLDTMTP-------------------NCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EESCCCCEECTTCSCSC-----TTCCEEEEECCTTCCEECT-------------------TTTTTCCCSEEEEESSCCCS
T ss_pred CCCCcCcEeChhhcccC-----cccceeeCCCCccccccCc-------------------ccccCccccEEECcCCcccc
Confidence 77777765543222111 1111111111100 00000 00001244555555555543
Q ss_pred CCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CCc
Q 038779 240 GIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KGQ 318 (420)
Q Consensus 240 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~ 318 (420)
..+..+..+++|+.|+|++|.+++..+..|.++++|+.|++++|++++..|..|..+++|++|++++|++++..+. ...
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 3333444455555555555555544444445555555555555555544444455555555555555555443332 133
Q ss_pred CCccCcccccCCcCCc
Q 038779 319 FAIFDESNYRGNIHLC 334 (420)
Q Consensus 319 ~~~l~~~~~~~n~~~c 334 (420)
++.++.+++.+||+.|
T Consensus 319 l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 319 VGNLETLILDSNPLAC 334 (477)
T ss_dssp GGGCCEEECCSSCEEC
T ss_pred CcccCEEEccCCCccC
Confidence 3444444555555544
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.6e-37 Score=283.64 Aligned_cols=241 Identities=27% Similarity=0.433 Sum_probs=224.1
Q ss_pred cee--cCCccccCCCCCCEEEccc-CcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccC
Q 038779 2 LSG--HIPSWIGNFPVLAVMIMSK-NRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPI 77 (420)
Q Consensus 2 ~~g--~ip~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 77 (420)
++| .+|+.|+++++|++|++++ |.+++.+|..|+++++|++|++++|.+++..|..| .+++|++|++++|++++..
T Consensus 62 l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 141 (313)
T 1ogq_A 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141 (313)
T ss_dssp CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC
Confidence 567 8999999999999999995 99999999999999999999999999999999999 9999999999999999999
Q ss_pred ChhhhCCCCCcEEecccCcccccCCcCCCCCC-CCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccc
Q 038779 78 PNALFRSSELLTLDLTDNHFSGRIPHQINTLS-NLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSV 156 (420)
Q Consensus 78 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 156 (420)
|..|..+++|++|+|++|++++.+|..+..++ +|++|++++|++++..|..+..++ |+.|++++|.+.+..|..+..
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~- 219 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS- 219 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT-
T ss_pred ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc-
Confidence 99999999999999999999999999999998 999999999999999999999998 999999999998776665543
Q ss_pred cccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCc
Q 038779 157 SFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNE 236 (420)
Q Consensus 157 ~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 236 (420)
+++|+.|++++|.
T Consensus 220 -------------------------------------------------------------------l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 220 -------------------------------------------------------------------DKNTQKIHLAKNS 232 (313)
T ss_dssp -------------------------------------------------------------------TSCCSEEECCSSE
T ss_pred -------------------------------------------------------------------CCCCCEEECCCCc
Confidence 6789999999999
Q ss_pred cccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccC
Q 038779 237 LTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLV 313 (420)
Q Consensus 237 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 313 (420)
+++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+.-|..
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 9976665 888999999999999999999999999999999999999999998886 88999999999999965544
No 8
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.9e-35 Score=297.88 Aligned_cols=347 Identities=19% Similarity=0.140 Sum_probs=251.9
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
+||+.+. +++++|||++|+|+++.+.+|.++++|++|+|++|+|+++.+++| ++++|++|+|++|++++..+++|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 4676664 479999999999998888899999999999999999999999999 9999999999999999888889999
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEccccccccc-CCccccCCCCCcEEeCcCCccccCCCcccccccc----
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGP-IPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSF---- 158 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---- 158 (420)
+++|++|+|++|+++++.+..|+++++|++|+|++|.+++. .|..+..+++|++|++++|++++..+..+..+..
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 99999999999999988888899999999999999999864 5788899999999999999998766665544332
Q ss_pred ---cccCCcccccccccchhh------------------------cc--------------C------------------
Q 038779 159 ---WSQGKNDLYGIELNLEWD------------------------LG--------------A------------------ 179 (420)
Q Consensus 159 ---l~~~~n~l~~~~~~~~~~------------------------~~--------------~------------------ 179 (420)
+.+..|.+..+....+.. .. .
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 222333322111100000 00 0
Q ss_pred -----------------C-------------------------CCCcccCcccccccCCCC-------------------
Q 038779 180 -----------------G-------------------------AAGTYDNSNLEMYLSNGA------------------- 198 (420)
Q Consensus 180 -----------------~-------------------------~~~~~~~~~~~~~~~~~~------------------- 198 (420)
. ....+..+.+........
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence 0 000000000000000000
Q ss_pred --CCCCC-CcceEEEEeccC------------------------------------------------------------
Q 038779 199 --HGPPG-QHVEVEFVTKNR------------------------------------------------------------ 215 (420)
Q Consensus 199 --~~~~~-~~~~~~~~~~~~------------------------------------------------------------ 215 (420)
..... ..........+.
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccc
Confidence 00000 000000000000
Q ss_pred --------------c---cccCCccccCCCeEEccCCcc-ccCCCccccCccCCCEEecCCcccccccchhhhccCCCCE
Q 038779 216 --------------N---ELYNGSNLDYMSGLDLSCNEL-TGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTES 277 (420)
Q Consensus 216 --------------~---~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 277 (420)
. .......++.++.|++++|.+ .+..|..|..+++|++|+|++|++++.+|..|.++++|++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 0 000011245677788888864 3456778899999999999999999999999999999999
Q ss_pred EeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCC-CcC-CccCcccccCCcCCcCCC------------------
Q 038779 278 LDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDK-GQF-AIFDESNYRGNIHLCGSI------------------ 337 (420)
Q Consensus 278 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~-~~l~~~~~~~n~~~c~~~------------------ 337 (420)
|+|++|+|++..|..|..+++|++||+++|++++..|.. ..+ ..++.+++++|||.|++.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~ 602 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 602 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCC
Confidence 999999999999999999999999999999999998873 344 678999999999999653
Q ss_pred CCCCCCCcccccccCC
Q 038779 338 INKSCNSAEEILATTS 353 (420)
Q Consensus 338 ~~~~C~~~~~~~~~~~ 353 (420)
..+.|+.|+...+...
T Consensus 603 ~~~~C~~P~~~~g~~l 618 (635)
T 4g8a_A 603 ERMECATPSDKQGMPV 618 (635)
T ss_dssp GGCBBCSSTTTTTCBG
T ss_pred CCceeCCchHHCCCEe
Confidence 2256988887766553
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-36 Score=295.53 Aligned_cols=313 Identities=16% Similarity=0.095 Sum_probs=253.2
Q ss_pred ceecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChh
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNA 80 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 80 (420)
+++..|..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..| ++++|++|++++|++++..+..
T Consensus 44 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 123 (477)
T 2id5_A 44 IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM 123 (477)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT
T ss_pred cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhH
Confidence 556667899999999999999999999889999999999999999999998888888 9999999999999999999999
Q ss_pred hhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccc---cccc
Q 038779 81 LFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCL---TSVS 157 (420)
Q Consensus 81 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~ 157 (420)
|..+++|++|+|++|.+++..+..|.++++|++|++++|++++..+..|..+++|+.|++++|.+.+..+..+ .+++
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 9999999999999999999999999999999999999999998777889999999999999999986655444 4556
Q ss_pred ccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCcc
Q 038779 158 FWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNEL 237 (420)
Q Consensus 158 ~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 237 (420)
.|.+.+|............. ..+..+.+... ............+++|+.|+|++|.+
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~n------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYG-----LNLTSLSITHC------------------NLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEEECCTTCCEECTTTTTT-----CCCSEEEEESS------------------CCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred eeeCCCCccccccCcccccC-----ccccEEECcCC------------------cccccCHHHhcCccccCeeECCCCcC
Confidence 66666654432211111100 01111111111 00000101123478999999999999
Q ss_pred ccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCC
Q 038779 238 TGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKG 317 (420)
Q Consensus 238 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 317 (420)
++..+..|..+++|+.|+|++|++++..|..|.++++|+.|++++|++++..+..|..+++|++|++++|++.|.|+...
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence 98888899999999999999999999889999999999999999999998888889999999999999999999986432
Q ss_pred cCCccCcccccCCcCCcCCC
Q 038779 318 QFAIFDESNYRGNIHLCGSI 337 (420)
Q Consensus 318 ~~~~l~~~~~~~n~~~c~~~ 337 (420)
.+.......+.++...|..|
T Consensus 341 ~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 341 VFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp HHTTTTSSCCTTCCCBEEES
T ss_pred HHhhhhccccCccCceeCCc
Confidence 23333445667777777544
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-35 Score=298.85 Aligned_cols=117 Identities=21% Similarity=0.142 Sum_probs=101.8
Q ss_pred CccccCCCeEEccCCcccc-CCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCC
Q 038779 221 GSNLDYMSGLDLSCNELTG-GIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFL 299 (420)
Q Consensus 221 ~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 299 (420)
...+++|+.|++++|.+++ ..|..++.+++|++|++++|++++..|..|.++++|++|++++|++++..|..+..+++|
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 3457889999999999887 478888999999999999999998888899999999999999999998889999999999
Q ss_pred CEEEcccCcCcccCCCCCcCC-ccCcccccCCcCCcCCC
Q 038779 300 SNFNVSYNNLSGLVPDKGQFA-IFDESNYRGNIHLCGSI 337 (420)
Q Consensus 300 ~~L~L~~N~l~~~~p~~~~~~-~l~~~~~~~n~~~c~~~ 337 (420)
++|++++|+++..++....++ .++.+++.+||+.|+++
T Consensus 524 ~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999997665555565 58999999999999654
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-35 Score=298.81 Aligned_cols=279 Identities=23% Similarity=0.213 Sum_probs=168.9
Q ss_pred ccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCC-hhhhCCCCC
Q 038779 10 IGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIP-NALFRSSEL 87 (420)
Q Consensus 10 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 87 (420)
|+.+++|++|++++|.++ .+|+.+..+++|++|++++|.+.+..|..+ .+++|++|++++|.+.+..+ ..+..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 444444444444444444 344444444444444444444444444444 44444444444444443222 224444444
Q ss_pred cEEecccCcccccC--CcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCc----cccccccccc
Q 038779 88 LTLDLTDNHFSGRI--PHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPS----CLTSVSFWSQ 161 (420)
Q Consensus 88 ~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~l~~ 161 (420)
++|++++|.+++.. +..+..+++|++|++++|++++..|..|..+++|+.|++++|++.+..+. .+.+++.|.+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 45555444444333 34444444455555544444444444444444455555544444433221 1233333333
Q ss_pred CCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccC-
Q 038779 162 GKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGG- 240 (420)
Q Consensus 162 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~- 240 (420)
.+|.+...... ....+++|+.|++++|.+++.
T Consensus 433 ~~n~l~~~~~~-----------------------------------------------~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 433 SHSLLDISSEQ-----------------------------------------------LFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp TTCCCBTTCTT-----------------------------------------------TTTTCTTCCEEECTTCBCGGGE
T ss_pred CCCccCCcCHH-----------------------------------------------HHhCCCCCCEEECCCCCCCccc
Confidence 33333221111 112378899999999998762
Q ss_pred --CCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CC
Q 038779 241 --IPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KG 317 (420)
Q Consensus 241 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~ 317 (420)
.+..+..+++|+.|++++|++++..|..|.++++|+.|++++|++++..|..+..++.| +|++++|++++..|. ..
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence 33568889999999999999998888889999999999999999998888899999999 999999999887776 35
Q ss_pred cCCccCcccccCCcCCcCCC
Q 038779 318 QFAIFDESNYRGNIHLCGSI 337 (420)
Q Consensus 318 ~~~~l~~~~~~~n~~~c~~~ 337 (420)
.++.++.+++.+||+.|+++
T Consensus 545 ~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 545 ILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp HHHTSSEEECTTCCEECSGG
T ss_pred cCCCCCEEeCCCCCccccCC
Confidence 67788889999999998554
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-35 Score=300.00 Aligned_cols=324 Identities=18% Similarity=0.198 Sum_probs=245.0
Q ss_pred ecCCcccc--CCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCc-Ccc-cCCcCc-CC------CCCcEEECcCCc
Q 038779 4 GHIPSWIG--NFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENC-LSG-NMPSSL-NL------SSLKHLYLRKNG 72 (420)
Q Consensus 4 g~ip~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-i~~-~~~~~~-~l------~~L~~L~L~~n~ 72 (420)
|.+|+.++ ++++|++|+|++|.+.+.+|+.|+++++|++|++++|+ +++ .+|..+ .+ ++|++|++++|+
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 45999999 99999999999999999999999999999999999998 888 788777 65 899999999999
Q ss_pred ccccCCh--hhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCC-CcEEeCcCCccccCC
Q 038779 73 FNGPIPN--ALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQK-LGIMDLSHNRFNGSI 149 (420)
Q Consensus 73 l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~ 149 (420)
++ .+|. .+..+++|++|++++|.++|.+| .|..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence 99 7887 89999999999999999998888 8899999999999999998 77888999998 999999999988 77
Q ss_pred Ccccc-----cccccccCCcccccccccchhhccC--CCCCcccCcccccccCCCCCCCC---CCcceEEEEeccCcccc
Q 038779 150 PSCLT-----SVSFWSQGKNDLYGIELNLEWDLGA--GAAGTYDNSNLEMYLSNGAHGPP---GQHVEVEFVTKNRNELY 219 (420)
Q Consensus 150 p~~l~-----~l~~l~~~~n~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 219 (420)
|..+. +++.|.+.+|.+.......+..... .....+..+.+..+.-...+... ......-....+.....
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 76543 5778888888876543222110000 00111222222222111111100 00111111111111121
Q ss_pred CCc----------cccCCCeEEccCCccccCCCcccc--CccCCCEEecCCcccccccchhhhccCCCCEEeC------C
Q 038779 220 NGS----------NLDYMSGLDLSCNELTGGIPVEIG--ELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDL------S 281 (420)
Q Consensus 220 ~~~----------~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s 281 (420)
... .+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++ +
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 111 1238999999999999 6777776 89999999999999996 8888999999999999 5
Q ss_pred CCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCcCCcC
Q 038779 282 YNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCG 335 (420)
Q Consensus 282 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~ 335 (420)
+|++.+.+|..+..+++|++|++++|++ +.+|.. ..+.++.+++++|+..|-
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence 6788889999999999999999999999 555554 337899999999998874
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-34 Score=282.39 Aligned_cols=315 Identities=19% Similarity=0.154 Sum_probs=240.2
Q ss_pred CCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccc-cCChhhhCCCCCcEEecc
Q 038779 16 LAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNG-PIPNALFRSSELLTLDLT 93 (420)
Q Consensus 16 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~ 93 (420)
-+.++.+++.++ .+|. + .++|++|+|++|.+++..|..| .+++|++|++++|.+.+ ..+..|.++++|++|+|+
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 357888899888 5665 3 3799999999999999999999 99999999999999974 457789999999999999
Q ss_pred cCcccccCCcCCCCCCCCcEEEcccccccccCCcc--ccCCCCCcEEeCcCCccccCCCcc----cccccccccCCcccc
Q 038779 94 DNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQ--LCELQKLGIMDLSHNRFNGSIPSC----LTSVSFWSQGKNDLY 167 (420)
Q Consensus 94 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~l~~~~n~l~ 167 (420)
+|.+++..|..|+++++|++|++++|++++..+.. |..+++|++|++++|.+.+..|.. +.+++.|++.+|++.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999899999999999999999999999755444 999999999999999999776654 466778888999887
Q ss_pred cccccchhhccCCC--C---------------------------CcccCcccccccCCC-CCCC---CCCcceEEEEecc
Q 038779 168 GIELNLEWDLGAGA--A---------------------------GTYDNSNLEMYLSNG-AHGP---PGQHVEVEFVTKN 214 (420)
Q Consensus 168 ~~~~~~~~~~~~~~--~---------------------------~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~ 214 (420)
.............. . ..+..+.+..+.... .+.. ......+......
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 66443332211000 0 001111111100000 0000 0000001110000
Q ss_pred C-----------------ccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCE
Q 038779 215 R-----------------NELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTES 277 (420)
Q Consensus 215 ~-----------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 277 (420)
. ...+.....++|+.|++++|++++..|..++.+++|++|++++|++++..|..|.++++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 0 00011112368999999999999999999999999999999999999888999999999999
Q ss_pred EeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CCcCCccCcccccCCcCCc
Q 038779 278 LDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KGQFAIFDESNYRGNIHLC 334 (420)
Q Consensus 278 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c 334 (420)
|++++|++++..|..+..+++|++|++++|++++..|. ...++.++.+++.+|....
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 99999999988899999999999999999999999776 5678899999999997553
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-34 Score=274.80 Aligned_cols=312 Identities=17% Similarity=0.129 Sum_probs=242.5
Q ss_pred CCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEE
Q 038779 12 NFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTL 90 (420)
Q Consensus 12 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 90 (420)
.++++++|++++|.++...+..|..+++|++|++++|.+++..+..| .+++|++|++++|++++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 36889999999999997666678999999999999999998888888 99999999999999998888889999999999
Q ss_pred ecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCccccccc
Q 038779 91 DLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIE 170 (420)
Q Consensus 91 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~ 170 (420)
+|++|.++.+.+..|..+++|++|++++|++++..+..|..+++|++|++++|++++.....+.+++.+.+..|.+....
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 99999999666666899999999999999999888888999999999999999998766677888888888888776654
Q ss_pred ccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccC
Q 038779 171 LNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQN 250 (420)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 250 (420)
........ .+....+........ .....+...............+++|+.|++++|.+++..|..|..+++
T Consensus 203 ~~~~L~~L-----~l~~n~l~~~~~~~~----~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 203 IPIAVEEL-----DASHNSINVVRGPVN----VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CCSSCSEE-----ECCSSCCCEEECCCC----SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred CCCcceEE-----ECCCCeeeecccccc----ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 33211100 011111111100000 001111111111111112344788999999999999888889999999
Q ss_pred CCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCC
Q 038779 251 VRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGN 330 (420)
Q Consensus 251 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n 330 (420)
|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++... ...++.++.+++.+|
T Consensus 274 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 274 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence 9999999999984 6666788899999999999998 56666788899999999999997663 456788899999999
Q ss_pred cCCcCC
Q 038779 331 IHLCGS 336 (420)
Q Consensus 331 ~~~c~~ 336 (420)
++.|.+
T Consensus 350 ~~~~~~ 355 (390)
T 3o6n_A 350 DWDCNS 355 (390)
T ss_dssp CEEHHH
T ss_pred Cccchh
Confidence 999843
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-33 Score=286.06 Aligned_cols=145 Identities=18% Similarity=0.089 Sum_probs=85.7
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCC
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
+|..+.. .+++|++++|.+++..|.+|+++++|++|+|++|++.+..|+.| ++++|++|++++|++++..|.+|.++
T Consensus 27 iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 27 IPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp CCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 4544432 45666666666665556666666666666666666666666666 66666666666666665556666666
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcc
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSC 152 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 152 (420)
++|++|+|++|.+++..+..|+++++|++|++++|++++.....+..+++|++|++++|.+.+..|..
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 66666666666666554555666666666666666665543334444666666666666655444433
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=286.99 Aligned_cols=330 Identities=19% Similarity=0.161 Sum_probs=218.0
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCC
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
||..+. +++++|++++|.+++..+.+|.++++|++|++++|++++..++.| ++++|++|++++|++++..|.+|.++
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 565543 467777888777777777777777778888887777777777777 77777888887777776667777777
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccc-cCCccccCCCCCcEEeCcCCccccCCCccccccccc----
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQG-PIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFW---- 159 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l---- 159 (420)
++|++|++++|.+++..+..|+++++|++|++++|.+++ .+|..|.++++|++|++++|.+.+..+..+..++.+
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 777777777777776555567777777777777777775 357777777777777777777765444443333222
Q ss_pred ---ccCCcccccccccch--------------------------------------------------------------
Q 038779 160 ---SQGKNDLYGIELNLE-------------------------------------------------------------- 174 (420)
Q Consensus 160 ---~~~~n~l~~~~~~~~-------------------------------------------------------------- 174 (420)
.+..|.+.......+
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 223332221110000
Q ss_pred ------------------hh-----------------cc----------------------C------------------
Q 038779 175 ------------------WD-----------------LG----------------------A------------------ 179 (420)
Q Consensus 175 ------------------~~-----------------~~----------------------~------------------ 179 (420)
+. .. .
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCC
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccc
Confidence 00 00 0
Q ss_pred ----CCCCcccCcccccccCC----------CCCCC-----CCCcc-eEE--E----------EeccCc----cccCCcc
Q 038779 180 ----GAAGTYDNSNLEMYLSN----------GAHGP-----PGQHV-EVE--F----------VTKNRN----ELYNGSN 223 (420)
Q Consensus 180 ----~~~~~~~~~~~~~~~~~----------~~~~~-----~~~~~-~~~--~----------~~~~~~----~~~~~~~ 223 (420)
.....+..+.+...... ..+.. ..... .+. + ...+.. .......
T Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc
Confidence 00000111111111000 00000 00000 000 0 000000 0012345
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccc-cccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLS-GSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNF 302 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 302 (420)
+++|+.|++++|.+.+..|..+.++++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 788999999999998888888999999999999999997 5788889999999999999999998889999999999999
Q ss_pred EcccCcCcccCCC-CCcCCccCcccccCCcCCcCCC
Q 038779 303 NVSYNNLSGLVPD-KGQFAIFDESNYRGNIHLCGSI 337 (420)
Q Consensus 303 ~L~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 337 (420)
++++|++++..|. ...++.++.+++.+|++.|.++
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 9999999988776 4678889999999999998544
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6e-34 Score=286.80 Aligned_cols=311 Identities=17% Similarity=0.129 Sum_probs=246.2
Q ss_pred CCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEe
Q 038779 13 FPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLD 91 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 91 (420)
+++++.|++++|.++...+..|..+++|+.|+|++|.+++..|..| .+++|++|+|++|.+++..|..|.++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 5788999999999997777778999999999999999999888888 999999999999999988888899999999999
Q ss_pred cccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccc
Q 038779 92 LTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIEL 171 (420)
Q Consensus 92 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~ 171 (420)
|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++|.+.+..+..+.++..+.+..|.+.....
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 99999997777778999999999999999998888899999999999999999987766778888888888888776543
Q ss_pred cchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCC
Q 038779 172 NLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNV 251 (420)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 251 (420)
....... .+....+........ .....+...............+++|+.|+|++|.+++..|..|..+++|
T Consensus 210 ~~~L~~L-----~ls~n~l~~~~~~~~----~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 210 PIAVEEL-----DASHNSINVVRGPVN----VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp CTTCSEE-----ECCSSCCCEEECSCC----SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred Cchhhee-----eccCCcccccccccC----CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 3211100 011111111110000 0111111111111111223457899999999999999889999999999
Q ss_pred CEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCc
Q 038779 252 RSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNI 331 (420)
Q Consensus 252 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~ 331 (420)
+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|++++.. ...++.++.+++.+|+
T Consensus 281 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 281 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence 999999999995 6777788999999999999998 57777888999999999999998764 4567889999999999
Q ss_pred CCcCC
Q 038779 332 HLCGS 336 (420)
Q Consensus 332 ~~c~~ 336 (420)
+.|.+
T Consensus 357 ~~~~~ 361 (597)
T 3oja_B 357 WDCNS 361 (597)
T ss_dssp EEHHH
T ss_pred CCChh
Confidence 99843
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.8e-34 Score=289.22 Aligned_cols=321 Identities=17% Similarity=0.190 Sum_probs=249.8
Q ss_pred ceecCCccccCCCCCCEEEcccCccccc-----------------CChhhh--cCCCCCEEEccCCcCcccCCcCc-CCC
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGN-----------------IPPELS--KFGGPLILDVSENCLSGNMPSSL-NLS 61 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~Ls~n~i~~~~~~~~-~l~ 61 (420)
++| ||+.|+++++|++|+|++|.+++. +|+.++ ++++|++|+|++|.+.+.+|..+ .++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 567 999999999999999999999986 899998 99999999999999999999999 999
Q ss_pred CCcEEECcCCc-ccc-cCChhhhCC------CCCcEEecccCcccccCCc--CCCCCCCCcEEEcccccccccCCccccC
Q 038779 62 SLKHLYLRKNG-FNG-PIPNALFRS------SELLTLDLTDNHFSGRIPH--QINTLSNLRVLLLRGNYLQGPIPNQLCE 131 (420)
Q Consensus 62 ~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 131 (420)
+|++|++++|+ +++ .+|..+..+ ++|++|+|++|+++ .+|. .|+.+++|++|++++|+++|.+| .|..
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 99999999998 998 889988887 99999999999999 7888 89999999999999999998899 9999
Q ss_pred CCCCcEEeCcCCccccCCCccc---cc-ccccccCCcccccccccchhhccCCCCCcccCcccccc-cCCCCCCCCC---
Q 038779 132 LQKLGIMDLSHNRFNGSIPSCL---TS-VSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMY-LSNGAHGPPG--- 203 (420)
Q Consensus 132 l~~L~~L~L~~N~l~~~~p~~l---~~-l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--- 203 (420)
+++|+.|++++|++. .+|..+ .+ ++.|.+.+|.+..++.. +... ....+..+.+..+ ..+..+....
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~--~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNI--FDAK--SVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSC--CCTT--CSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchh--hhhc--ccCccCEEECcCCcCCCcchhhhcccc
Confidence 999999999999998 777654 44 77788899998754321 1110 0011222222222 1111111100
Q ss_pred ----CcceEE--EEeccCccccC---CccccCCCeEEccCCccccCCCccccCc-------cCCCEEecCCcccccccch
Q 038779 204 ----QHVEVE--FVTKNRNELYN---GSNLDYMSGLDLSCNELTGGIPVEIGEL-------QNVRSLNLSHNYLSGSIPE 267 (420)
Q Consensus 204 ----~~~~~~--~~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~ 267 (420)
....+. ....+...... +..+++|+.|+|++|+++...+..+... ++|+.|+|++|+++ .+|.
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 111222 22222222222 1236889999999999994443344433 28999999999999 7787
Q ss_pred hhh--ccCCCCEEeCCCCcCcccCCccccCCCCCCEEEc------ccCcCcccCCC-CCcCCccCcccccCCcC
Q 038779 268 SFF--NLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNV------SYNNLSGLVPD-KGQFAIFDESNYRGNIH 332 (420)
Q Consensus 268 ~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~p~-~~~~~~l~~~~~~~n~~ 332 (420)
.+. .+++|+.|+|++|++++ +|..+..+++|++|++ ++|++.+.+|. ...++.++.+++++|..
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 776 99999999999999997 8888889999999999 56777877776 56788899999999986
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-33 Score=288.47 Aligned_cols=331 Identities=19% Similarity=0.139 Sum_probs=211.7
Q ss_pred ceecCCccccCCCC--CCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccc---
Q 038779 2 LSGHIPSWIGNFPV--LAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNG--- 75 (420)
Q Consensus 2 ~~g~ip~~~~~l~~--L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~--- 75 (420)
+++..|..|..++. |++|++++|.+++..|..|+.+++|++|++++|.+.+..|..| ++++|++|++++|...+
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 45556777776644 8888888888887777778888888888888888877777766 66666666666554331
Q ss_pred --cCC----hhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcc----------------------------cccc
Q 038779 76 --PIP----NALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLR----------------------------GNYL 121 (420)
Q Consensus 76 --~~~----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~----------------------------~N~l 121 (420)
.+| ..|..+++|++|++++|.+++..+..|.++++|++|+++ +|++
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 111 245566666666666666666555556665555555554 4455
Q ss_pred cccCCccccCCCCCcEEeCcCCccccCCC-c---ccccccccccCCcccccccccchhhccCCCCCcccCcccccccC--
Q 038779 122 QGPIPNQLCELQKLGIMDLSHNRFNGSIP-S---CLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLS-- 195 (420)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~---~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 195 (420)
++..|.+|..+++|+.|++++|.+.+.+| . .+.+++.+.+.+|++.......+.... .+..+.+.....
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-----~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP-----SLQRLMLRRVALKN 468 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT-----TCCEEECTTSCCBC
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc-----ccccchhccccccc
Confidence 55556667777777777777777765444 2 334555666666665544333222111 111111111100
Q ss_pred -CCCCCCCC--CcceEEEEeccCcc---ccCCccccCCCeEEccCCccccCCC--------ccccCccCCCEEecCCccc
Q 038779 196 -NGAHGPPG--QHVEVEFVTKNRNE---LYNGSNLDYMSGLDLSCNELTGGIP--------VEIGELQNVRSLNLSHNYL 261 (420)
Q Consensus 196 -~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l 261 (420)
+..+.... .....-....+... ......+++|+.|++++|++++..+ ..|.++++|+.|+|++|++
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred cccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 00111000 01111111111111 1123457888899999998875422 2377888999999999999
Q ss_pred ccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCC-C-cCCccCcccccCCcCCcCCC
Q 038779 262 SGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDK-G-QFAIFDESNYRGNIHLCGSI 337 (420)
Q Consensus 262 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~-~~~~l~~~~~~~n~~~c~~~ 337 (420)
+...+..|.++++|+.|++++|++++..+..|..+++|++|++++|++++..+.. . .++.++.+++.+|||.|++.
T Consensus 549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 8555567899999999999999999777778889999999999999998877653 2 57888999999999999765
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-34 Score=294.74 Aligned_cols=322 Identities=17% Similarity=0.206 Sum_probs=233.5
Q ss_pred ecCCcccc--CCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCc-Ccc-cCCcCc-CC-------CCCcEEECcCC
Q 038779 4 GHIPSWIG--NFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENC-LSG-NMPSSL-NL-------SSLKHLYLRKN 71 (420)
Q Consensus 4 g~ip~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-i~~-~~~~~~-~l-------~~L~~L~L~~n 71 (420)
|.||+.++ ++++|++|+|++|.+.+.+|..|+++++|+.|+|++|+ +++ .+|..+ .+ ++|++|++++|
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 36999988 99999999999999999999999999999999999998 888 777655 44 59999999999
Q ss_pred cccccCCh--hhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCC-CcEEeCcCCccccC
Q 038779 72 GFNGPIPN--ALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQK-LGIMDLSHNRFNGS 148 (420)
Q Consensus 72 ~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~ 148 (420)
+++ .+|. .|.++++|++|+|++|.++ .+| .|..+++|+.|+|++|+++ .+|..+..+++ |+.|+|++|.+. .
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 999 7887 8999999999999999999 777 9999999999999999999 88888999999 999999999998 7
Q ss_pred CCccccc-----ccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCC---CCcceEEEEeccCccccC
Q 038779 149 IPSCLTS-----VSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPP---GQHVEVEFVTKNRNELYN 220 (420)
Q Consensus 149 ~p~~l~~-----l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 220 (420)
+|..+.. ++.|.+++|++.+................+..+.+..+....++... ...+.......+......
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC
Confidence 7766543 77888888888653211100000000011112222221111111000 000111111111111111
Q ss_pred C---c-------cccCCCeEEccCCccccCCCcccc--CccCCCEEecCCcccccccchhhhccCCCCEEeCCC------
Q 038779 221 G---S-------NLDYMSGLDLSCNELTGGIPVEIG--ELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSY------ 282 (420)
Q Consensus 221 ~---~-------~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------ 282 (420)
. . .+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+|++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 1 1 1237888888888888 6677766 78888888888888885 677788888888888865
Q ss_pred CcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCcCCc
Q 038779 283 NRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLC 334 (420)
Q Consensus 283 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 334 (420)
|++.+.+|..+..+++|++|+|++|++ +.+|.. ..+.++.+++++|+...
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 677778888888888888888888888 555553 23577788888887654
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=100.00 E-value=4.5e-34 Score=264.04 Aligned_cols=240 Identities=22% Similarity=0.234 Sum_probs=195.3
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccC--CcCc-CCCCCcEEECcCCcccccCChhh
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNM--PSSL-NLSSLKHLYLRKNGFNGPIPNAL 81 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~--~~~~-~l~~L~~L~L~~n~l~~~~~~~~ 81 (420)
.+|..+. ++|++|++++|.++...+..|.++++|+.|++++|.++... +..+ .+++|++|++++|.++ .+|..+
T Consensus 21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~ 97 (306)
T 2z66_A 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 97 (306)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEE
T ss_pred cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhc
Confidence 3565443 57888888888888555556788888888888888887432 4555 7888888888888887 456668
Q ss_pred hCCCCCcEEecccCcccccCC-cCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcccc-CCCccccccccc
Q 038779 82 FRSSELLTLDLTDNHFSGRIP-HQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNG-SIPSCLTSVSFW 159 (420)
Q Consensus 82 ~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~l 159 (420)
..+++|++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+ ..|..+..
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---- 173 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE---- 173 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh----
Confidence 888888888888888886554 578888888888888888887788888888888888888888764 34443322
Q ss_pred ccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCcccc
Q 038779 160 SQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTG 239 (420)
Q Consensus 160 ~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 239 (420)
+++|+.|++++|++++
T Consensus 174 ----------------------------------------------------------------l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 174 ----------------------------------------------------------------LRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp ----------------------------------------------------------------CTTCCEEECTTSCCCE
T ss_pred ----------------------------------------------------------------CcCCCEEECCCCCcCC
Confidence 6789999999999998
Q ss_pred CCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCC-CCCEEEcccCcCcccCCC
Q 038779 240 GIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELN-FLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 240 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~ 315 (420)
..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|+++|.|+.
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 8888999999999999999999977777899999999999999999998998888884 899999999999998754
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=5.2e-33 Score=270.82 Aligned_cols=238 Identities=19% Similarity=0.149 Sum_probs=177.3
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCC
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
+|..+. ++++.|+|++|++++..|+.|.++++|+.|+|++|.++++.+..| ++++|++|+|++|++++..+..|..+
T Consensus 69 iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 69 VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 444443 456667777776666666666666777777777776666666666 66667777777776665555566666
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEccc-ccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCC
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRG-NYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGK 163 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~ 163 (420)
++|++|+|++|.++.+.+..|..+++|++|++++ |.+....+..|.++++|+.|++++|.+.+ +|. +
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~---------- 214 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-L---------- 214 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-C----------
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-c----------
Confidence 6777777777766655556666667777777666 34444444456666667777776666652 221 1
Q ss_pred cccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCc
Q 038779 164 NDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPV 243 (420)
Q Consensus 164 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 243 (420)
..+++|+.|+|++|.+++..|.
T Consensus 215 ----------------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 215 ----------------------------------------------------------TPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp ----------------------------------------------------------TTCTTCCEEECTTSCCSEECGG
T ss_pred ----------------------------------------------------------cccccccEEECcCCcCcccCcc
Confidence 1167899999999999998899
Q ss_pred cccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC
Q 038779 244 EIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 244 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 315 (420)
.|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..+..+..+++|++|++++|++.|.|.-
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 999999999999999999988899999999999999999999988888889999999999999999999853
No 23
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=270.22 Aligned_cols=237 Identities=21% Similarity=0.194 Sum_probs=164.4
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCC
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
||..+. ++++.|+|++|++++..+..|.++++|+.|+|++|.++++.+..| ++++|++|+|++|+++...+..|..+
T Consensus 58 iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 135 (440)
T 3zyj_A 58 VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135 (440)
T ss_dssp CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence 444443 455566666666655555555666666666666666655555555 55666666666666655444555556
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEccc-ccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCC
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRG-NYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGK 163 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~ 163 (420)
++|++|+|++|.++.+.+..|..+++|++|++++ |.++...+..|.++++|+.|++++|.++ .+|. +
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~---------- 203 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-L---------- 203 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-C----------
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-c----------
Confidence 6666666666666555555555666666666655 3333333345555666666666666554 2221 0
Q ss_pred cccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCc
Q 038779 164 NDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPV 243 (420)
Q Consensus 164 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 243 (420)
..+++|+.|+|++|++++..|.
T Consensus 204 ----------------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 204 ----------------------------------------------------------TPLIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp ----------------------------------------------------------TTCSSCCEEECTTSCCCEECTT
T ss_pred ----------------------------------------------------------CCCcccCEEECCCCccCccChh
Confidence 1167899999999999988899
Q ss_pred cccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCC
Q 038779 244 EIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVP 314 (420)
Q Consensus 244 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 314 (420)
.|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.|.|.
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99999999999999999998888899999999999999999998888888999999999999999999885
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1e-32 Score=257.81 Aligned_cols=273 Identities=21% Similarity=0.256 Sum_probs=224.4
Q ss_pred cCCccccCC------CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccC
Q 038779 5 HIPSWIGNF------PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPI 77 (420)
Q Consensus 5 ~ip~~~~~l------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 77 (420)
++|..+... .+++.++++++.++ .+|..+. ++|+.|++++|.+.+..|..| ++++|++|++++|++++..
T Consensus 18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 94 (332)
T 2ft3_A 18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94 (332)
T ss_dssp -------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC
Confidence 467665543 36999999999998 6776653 699999999999999888889 9999999999999999888
Q ss_pred ChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcccc--CCCcccc-
Q 038779 78 PNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNG--SIPSCLT- 154 (420)
Q Consensus 78 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~- 154 (420)
|.+|.++++|++|+|++|.++ .+|..+. ++|++|++++|++++..+..|..+++|+.|++++|.+.. ..+..+.
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred HhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence 999999999999999999998 4555544 899999999999998777889999999999999999863 4555444
Q ss_pred -cccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEcc
Q 038779 155 -SVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLS 233 (420)
Q Consensus 155 -~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 233 (420)
+++.+.+..|++..++... .++|+.|+++
T Consensus 172 l~L~~L~l~~n~l~~l~~~~--------------------------------------------------~~~L~~L~l~ 201 (332)
T 2ft3_A 172 LKLNYLRISEAKLTGIPKDL--------------------------------------------------PETLNELHLD 201 (332)
T ss_dssp CCCSCCBCCSSBCSSCCSSS--------------------------------------------------CSSCSCCBCC
T ss_pred CccCEEECcCCCCCccCccc--------------------------------------------------cCCCCEEECC
Confidence 5677777777765533211 3678999999
Q ss_pred CCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccC
Q 038779 234 CNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLV 313 (420)
Q Consensus 234 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 313 (420)
+|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..
T Consensus 202 ~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 99999888888999999999999999999888888999999999999999998 67778999999999999999998876
Q ss_pred CCCC-------cCCccCcccccCCcCCc
Q 038779 314 PDKG-------QFAIFDESNYRGNIHLC 334 (420)
Q Consensus 314 p~~~-------~~~~l~~~~~~~n~~~c 334 (420)
+... ....++.+++.+||+.+
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred hhHccccccccccccccceEeecCcccc
Confidence 5421 14567788899999875
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.6e-33 Score=278.06 Aligned_cols=320 Identities=19% Similarity=0.211 Sum_probs=216.5
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCC
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
||..+. ++|++|++++|.+++..|..|+++++|++|+|++|++++..|+.| ++++|++|++++|+++ .+|.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence 777664 788888999988887777888888889999999888888888888 8888888888888888 45544 78
Q ss_pred CCCcEEecccCccccc-CCcCCCCCCCCcEEEcccccccccCCccccCCCCC--cEEeCcCCcc--ccCCCccccc----
Q 038779 85 SELLTLDLTDNHFSGR-IPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKL--GIMDLSHNRF--NGSIPSCLTS---- 155 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~p~~l~~---- 155 (420)
++|++|+|++|++++. .|..|+++++|++|++++|++++. .+..+++| +.|++++|.+ .+..|..+..
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 8888888888888863 357888888888888888888753 34444444 7777777776 4444443332
Q ss_pred --------------------------------------------------------------------------------
Q 038779 156 -------------------------------------------------------------------------------- 155 (420)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (420)
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence
Q ss_pred ccccccCCccccc-ccccch---------------------------hhc-------------------c-CCCCCcccC
Q 038779 156 VSFWSQGKNDLYG-IELNLE---------------------------WDL-------------------G-AGAAGTYDN 187 (420)
Q Consensus 156 l~~l~~~~n~l~~-~~~~~~---------------------------~~~-------------------~-~~~~~~~~~ 187 (420)
++.|.+.+|.+.+ ++...+ ... . ......+..
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 357 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence 2222223333221 110000 000 0 011112222
Q ss_pred ccccccc-CCCCCCCCCC--cceEEEEeccCccc-----cCCccccCCCeEEccCCccccCCC-ccccCccCCCEEecCC
Q 038779 188 SNLEMYL-SNGAHGPPGQ--HVEVEFVTKNRNEL-----YNGSNLDYMSGLDLSCNELTGGIP-VEIGELQNVRSLNLSH 258 (420)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~ 258 (420)
+.+..+. .+..+..... ....-....+.... .....+++|+.|++++|.+++.+| ..+..+++|++|++++
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 2332221 1111111111 11122222222221 124568899999999999997454 4588899999999999
Q ss_pred cccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CCcCCccCcccccCCcCCcCC
Q 038779 259 NYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KGQFAIFDESNYRGNIHLCGS 336 (420)
Q Consensus 259 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~ 336 (420)
|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++...+. ...++.++.+++.+||+.|++
T Consensus 438 n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 438 NMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 999877766554 79999999999999 5666666999999999999999976665 567888999999999999954
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-32 Score=276.55 Aligned_cols=326 Identities=16% Similarity=0.129 Sum_probs=218.2
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.+|..+. +++++|+|++|.+++..+..|+++++|++|++++|.++++.|..| ++++|++|++++|++++..|++|.+
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 4676665 789999999999998888889999999999999999998888888 8999999999999999888899999
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccc-cCCccccCCCCCcEEeCcCCccccCCCccccccc-----
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQG-PIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVS----- 157 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~----- 157 (420)
+++|++|+|++|.+++..+..|+++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..|..+..+.
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 9999999999999987777889999999999999999986 4688899999999999999998876666554443
Q ss_pred --ccccCCcccccccccchhhcc-------CCC-----------------------------------------------
Q 038779 158 --FWSQGKNDLYGIELNLEWDLG-------AGA----------------------------------------------- 181 (420)
Q Consensus 158 --~l~~~~n~l~~~~~~~~~~~~-------~~~----------------------------------------------- 181 (420)
.+.+..|.+...+...+.... ...
T Consensus 183 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred cceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 455566655543322111000 000
Q ss_pred ---------------------CC----------------------cccCcccccccCCCCCCCC-CCcceEEEEeccCcc
Q 038779 182 ---------------------AG----------------------TYDNSNLEMYLSNGAHGPP-GQHVEVEFVTKNRNE 217 (420)
Q Consensus 182 ---------------------~~----------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 217 (420)
.. .+..+.+.......++... .....+.........
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCE
T ss_pred HhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCcc
Confidence 00 0000000000001111000 000111111110111
Q ss_pred ccCCccc--------------------------cCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccc-hhhh
Q 038779 218 LYNGSNL--------------------------DYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIP-ESFF 270 (420)
Q Consensus 218 ~~~~~~l--------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~ 270 (420)
......+ ++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+..| ..+.
T Consensus 343 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 1122223 445555555555442 33556666777777777777776655 5677
Q ss_pred ccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCccc-CCC-CCcCCccCcccccCCcCC
Q 038779 271 NLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGL-VPD-KGQFAIFDESNYRGNIHL 333 (420)
Q Consensus 271 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~-~~~~~~l~~~~~~~n~~~ 333 (420)
.+++|++|++++|++++..|..+..+++|++|++++|++++. .|. ...++.++.+++++|...
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence 777888888888887777777778888888888888888762 343 466777888888877543
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.8e-33 Score=265.97 Aligned_cols=313 Identities=16% Similarity=0.130 Sum_probs=230.2
Q ss_pred cCCcc-ccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhh
Q 038779 5 HIPSW-IGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALF 82 (420)
Q Consensus 5 ~ip~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~ 82 (420)
.+|.. |..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..| .+++|++|++++|+++...+..|.
T Consensus 59 ~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 138 (390)
T 3o6n_A 59 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138 (390)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhc
Confidence 46665 6789999999999999998888899999999999999999999989989 999999999999999966666689
Q ss_pred CCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccC
Q 038779 83 RSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQG 162 (420)
Q Consensus 83 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~ 162 (420)
++++|++|++++|.+++..+..|..+++|++|++++|++++. .+..+++|+.|++++|.+.+.. ...+++.+.+.
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~--~~~~L~~L~l~ 213 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLA--IPIAVEELDAS 213 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEEE--CCSSCSEEECC
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccccC--CCCcceEEECC
Confidence 999999999999999988888999999999999999999865 2556777778777777765321 12345556666
Q ss_pred CcccccccccchhhccCCCCCcccCcccccccCCCCCC--CCCCcceEEEEeccCc--cccCCccccCCCeEEccCCccc
Q 038779 163 KNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHG--PPGQHVEVEFVTKNRN--ELYNGSNLDYMSGLDLSCNELT 238 (420)
Q Consensus 163 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~l~~L~~L~Ls~n~l~ 238 (420)
+|.+...+.... ..+..+.+..+.....+. .......+........ .......+++|+.|++++|+++
T Consensus 214 ~n~l~~~~~~~~--------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (390)
T 3o6n_A 214 HNSINVVRGPVN--------VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285 (390)
T ss_dssp SSCCCEEECCCC--------SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC
T ss_pred CCeeeecccccc--------ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc
Confidence 665544432211 011111111110000000 0000111111111110 1122344889999999999998
Q ss_pred cCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCc
Q 038779 239 GGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQ 318 (420)
Q Consensus 239 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 318 (420)
+ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++.. + +..+++|++|++++|+++|.+.. ..
T Consensus 286 ~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~ 359 (390)
T 3o6n_A 286 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-AL 359 (390)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HH
T ss_pred c-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HH
Confidence 5 5666778999999999999999 6777789999999999999999855 3 67889999999999999997633 34
Q ss_pred CCccCcccccCCcCCcCC
Q 038779 319 FAIFDESNYRGNIHLCGS 336 (420)
Q Consensus 319 ~~~l~~~~~~~n~~~c~~ 336 (420)
+..+....+.+++..|..
T Consensus 360 ~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 360 FRNVARPAVDDADQHCKI 377 (390)
T ss_dssp TTTCCTTTBCCCCSCCCT
T ss_pred HHHHHhhcccccCceecc
Confidence 556666677778777754
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.7e-32 Score=256.15 Aligned_cols=264 Identities=21% Similarity=0.251 Sum_probs=218.3
Q ss_pred CCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecc
Q 038779 15 VLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLT 93 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 93 (420)
+++.++++++.++ .+|..+. ++++.|++++|.+++..+..| .+++|++|++++|++++..|..|..+++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6889999999888 5665553 689999999999998888788 89999999999999998888899999999999999
Q ss_pred cCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcccc--CCCcc---cccccccccCCccccc
Q 038779 94 DNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNG--SIPSC---LTSVSFWSQGKNDLYG 168 (420)
Q Consensus 94 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~---l~~l~~l~~~~n~l~~ 168 (420)
+|.++ .+|..+. ++|++|++++|++++..+..|..+++|+.|++++|.+.. ..+.. +.+++.+.+.+|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99998 4555543 789999999999998777788999999999999998853 44444 4455666666666554
Q ss_pred ccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCc
Q 038779 169 IELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGEL 248 (420)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 248 (420)
++.. ..++|+.|++++|.+++..+..|..+
T Consensus 186 l~~~--------------------------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 186 IPQG--------------------------------------------------LPPSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp CCSS--------------------------------------------------CCTTCSEEECTTSCCCEECTGGGTTC
T ss_pred CCcc--------------------------------------------------ccccCCEEECCCCcCCccCHHHhcCC
Confidence 3211 14689999999999998889999999
Q ss_pred cCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCC-------cCCc
Q 038779 249 QNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKG-------QFAI 321 (420)
Q Consensus 249 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-------~~~~ 321 (420)
++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+... ....
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 99999999999999888888999999999999999999 778889999999999999999988765421 2356
Q ss_pred cCcccccCCcCCcC
Q 038779 322 FDESNYRGNIHLCG 335 (420)
Q Consensus 322 l~~~~~~~n~~~c~ 335 (420)
+..+++.+||..+.
T Consensus 295 l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 295 YSGVSLFSNPVQYW 308 (330)
T ss_dssp CSEEECCSSSSCGG
T ss_pred ccceEeecCccccc
Confidence 77888999998763
No 29
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.3e-32 Score=254.43 Aligned_cols=273 Identities=20% Similarity=0.236 Sum_probs=228.4
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..| .+++|++|++++|+++ .+|..+.
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~- 122 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP- 122 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-
T ss_pred ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-
Confidence 4677664 689999999999998888899999999999999999999989999 9999999999999999 4555444
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEccccccc--ccCCccccCCCCCcEEeCcCCccccCCCccccccccccc
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQ--GPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQ 161 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~ 161 (420)
++|++|++++|.+++..+..|.++++|++|++++|.++ +..+..+..+ +|+.|++++|.+++.......+++.|.+
T Consensus 123 -~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l 200 (332)
T 2ft3_A 123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHL 200 (332)
T ss_dssp -TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBC
T ss_pred -ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEEC
Confidence 79999999999999877788999999999999999996 3678888888 9999999999998533334467888888
Q ss_pred CCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCC
Q 038779 162 GKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGI 241 (420)
Q Consensus 162 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 241 (420)
.+|.+.......+ ..+++|+.|++++|.+++..
T Consensus 201 ~~n~i~~~~~~~l-----------------------------------------------~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 201 DHNKIQAIELEDL-----------------------------------------------LRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CSSCCCCCCTTSS-----------------------------------------------TTCTTCSCCBCCSSCCCCCC
T ss_pred CCCcCCccCHHHh-----------------------------------------------cCCCCCCEEECCCCcCCcCC
Confidence 8887765432211 22789999999999999888
Q ss_pred CccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCC------CCCCEEEcccCcCc--ccC
Q 038779 242 PVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTEL------NFLSNFNVSYNNLS--GLV 313 (420)
Q Consensus 242 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~N~l~--~~~ 313 (420)
+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|... +.|+.+++++|++. +..
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC
Confidence 889999999999999999999 788889999999999999999998877777653 67899999999997 333
Q ss_pred CC-CCcCCccCcccccCCc
Q 038779 314 PD-KGQFAIFDESNYRGNI 331 (420)
Q Consensus 314 p~-~~~~~~l~~~~~~~n~ 331 (420)
|. ...++.++.+++.+|.
T Consensus 313 ~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 313 PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGGTTBCCSTTEEC----
T ss_pred cccccccchhhhhhccccc
Confidence 33 3456677777777764
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-33 Score=275.52 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=95.0
Q ss_pred ccccCCCeEEccCCccccCCCc-cccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCC
Q 038779 222 SNLDYMSGLDLSCNELTGGIPV-EIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLS 300 (420)
Q Consensus 222 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 300 (420)
..+++|+.|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ 447 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC
Confidence 4578999999999999874554 488889999999999999877776654 79999999999999 6777777999999
Q ss_pred EEEcccCcCcccCCC-CCcCCccCcccccCCcCCcCC
Q 038779 301 NFNVSYNNLSGLVPD-KGQFAIFDESNYRGNIHLCGS 336 (420)
Q Consensus 301 ~L~L~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~ 336 (420)
+|++++|+++...+. ...++.++.+++.+|++.|++
T Consensus 448 ~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 448 ELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 999999999976655 567788999999999999954
No 31
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=2e-32 Score=266.72 Aligned_cols=250 Identities=22% Similarity=0.231 Sum_probs=221.0
Q ss_pred CCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecc
Q 038779 15 VLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLT 93 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 93 (420)
....++.++..++ .+|..+. ++++.|+|++|.+++..+..| .+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3578899999988 5676554 689999999999999999999 99999999999999998888999999999999999
Q ss_pred cCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCc-ccccccccccCCccccccccc
Q 038779 94 DNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPS-CLTSVSFWSQGKNDLYGIELN 172 (420)
Q Consensus 94 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~l~~~~n~l~~~~~~ 172 (420)
+|+++++.+..|.++++|++|+|++|+++...+..|..+++|+.|++++|...+.++. .+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~------------------ 193 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE------------------ 193 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT------------------
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc------------------
Confidence 9999988888899999999999999999988888999999999999998543333332 121
Q ss_pred chhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCC
Q 038779 173 LEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVR 252 (420)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 252 (420)
.+++|+.|+|++|++++. | .+..+++|+
T Consensus 194 --------------------------------------------------~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~ 221 (452)
T 3zyi_A 194 --------------------------------------------------GLFNLKYLNLGMCNIKDM-P-NLTPLVGLE 221 (452)
T ss_dssp --------------------------------------------------TCTTCCEEECTTSCCSSC-C-CCTTCTTCC
T ss_pred --------------------------------------------------CCCCCCEEECCCCccccc-c-ccccccccc
Confidence 278899999999999854 4 578999999
Q ss_pred EEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CCcCCccCcccccCCc
Q 038779 253 SLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KGQFAIFDESNYRGNI 331 (420)
Q Consensus 253 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~l~~~~~~~n~ 331 (420)
.|+|++|.+++..|..|.++++|+.|++++|++++..+..|..+++|++|+|++|++++..+. ...++.++.+++.+||
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 999999999988899999999999999999999999999999999999999999999987766 4568889999999999
Q ss_pred CCcCCC
Q 038779 332 HLCGSI 337 (420)
Q Consensus 332 ~~c~~~ 337 (420)
+.|++.
T Consensus 302 ~~CdC~ 307 (452)
T 3zyi_A 302 WNCDCD 307 (452)
T ss_dssp EECSTT
T ss_pred cCCCCC
Confidence 999654
No 32
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=100.00 E-value=4.2e-33 Score=254.80 Aligned_cols=248 Identities=20% Similarity=0.167 Sum_probs=215.9
Q ss_pred CCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEeccc
Q 038779 16 LAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTD 94 (420)
Q Consensus 16 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 94 (420)
-++++.+++.++ .+|..+ .++|+.|++++|.+++..+..| .+++|++|++++|.+++..+.+|.++++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 368999999998 566544 4799999999999999888888 999999999999999988899999999999999999
Q ss_pred Cc-ccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccc
Q 038779 95 NH-FSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNL 173 (420)
Q Consensus 95 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~ 173 (420)
|. ++...|..|..+++|++|++++|.+++..|..|..+++|++|++++|++.+..+..+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------ 151 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------ 151 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc------------------
Confidence 97 88777899999999999999999999888999999999999999999998544433332
Q ss_pred hhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCE
Q 038779 174 EWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRS 253 (420)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 253 (420)
+++|+.|++++|++++..+..|..+++|+.
T Consensus 152 --------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 152 --------------------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp --------------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred --------------------------------------------------CCCccEEECCCCcccccCHHHhcCccccCE
Confidence 678999999999999877778999999999
Q ss_pred EecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCcCC
Q 038779 254 LNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHL 333 (420)
Q Consensus 254 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 333 (420)
|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|++|++++|++.|.++....+.+++......+...
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~ 261 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP 261 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCB
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccc
Confidence 99999999988899999999999999999999987777899999999999999999999866433444554455555444
Q ss_pred c
Q 038779 334 C 334 (420)
Q Consensus 334 c 334 (420)
|
T Consensus 262 c 262 (285)
T 1ozn_A 262 C 262 (285)
T ss_dssp E
T ss_pred c
Confidence 4
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.1e-33 Score=285.28 Aligned_cols=319 Identities=17% Similarity=0.180 Sum_probs=246.2
Q ss_pred ceecCCccccCCCCCCEEEcccCcccc-----------------cCChhhh--cCCCCCEEEccCCcCcccCCcCc-CCC
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEG-----------------NIPPELS--KFGGPLILDVSENCLSGNMPSSL-NLS 61 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~L~Ls~n~i~~~~~~~~-~l~ 61 (420)
++| ||+.|+++++|++|+|++|.+++ .+|+.++ ++++|+.|+|++|.+.+.+|..+ .++
T Consensus 437 L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 437 ITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred ccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 456 99999999999999999999998 3888877 99999999999999999999999 999
Q ss_pred CCcEEECcCCc-ccc-cCChhhhCCC-------CCcEEecccCcccccCCc--CCCCCCCCcEEEcccccccccCCcccc
Q 038779 62 SLKHLYLRKNG-FNG-PIPNALFRSS-------ELLTLDLTDNHFSGRIPH--QINTLSNLRVLLLRGNYLQGPIPNQLC 130 (420)
Q Consensus 62 ~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~~~ 130 (420)
+|++|++++|+ +++ .+|..+..+. +|++|+|++|.++ .+|. .|+.+++|++|+|++|+++ .+| .|.
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence 99999999998 987 7888777665 9999999999999 7888 8999999999999999999 777 899
Q ss_pred CCCCCcEEeCcCCccccCCCccc---cc-ccccccCCcccccccccchhhccCCCCCcccCccccccc-CCCCCCCC---
Q 038779 131 ELQKLGIMDLSHNRFNGSIPSCL---TS-VSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYL-SNGAHGPP--- 202 (420)
Q Consensus 131 ~l~~L~~L~L~~N~l~~~~p~~l---~~-l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 202 (420)
.+++|+.|+|++|.+. .+|..+ .+ |+.|.+.+|.+..++. .+... ....+..+.+..+. .+..+..+
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~--~~~~~--~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN--IFNAK--SVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS--CCCTT--CSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch--hhhcc--ccCCCCEEECcCCcCCCccccchhhh
Confidence 9999999999999998 777654 44 7778889998875432 11110 00112223332221 11111111
Q ss_pred ----CCcceEEEEeccCccccC---CccccCCCeEEccCCccccCCCcc-ccC-------ccCCCEEecCCcccccccch
Q 038779 203 ----GQHVEVEFVTKNRNELYN---GSNLDYMSGLDLSCNELTGGIPVE-IGE-------LQNVRSLNLSHNYLSGSIPE 267 (420)
Q Consensus 203 ----~~~~~~~~~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~-~~~-------l~~L~~L~Ls~N~l~~~~~~ 267 (420)
...+.......+...... +..+++|+.|+|++|.++ .+|.. +.. +++|+.|+|++|+++ .+|.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 011222222222222221 123688999999999998 55543 332 238999999999999 7888
Q ss_pred hhh--ccCCCCEEeCCCCcCcccCCccccCCCCCCEEEccc------CcCcccCCC-CCcCCccCcccccCCcC
Q 038779 268 SFF--NLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSY------NNLSGLVPD-KGQFAIFDESNYRGNIH 332 (420)
Q Consensus 268 ~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~------N~l~~~~p~-~~~~~~l~~~~~~~n~~ 332 (420)
.+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|. ...++.++.+++++|..
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 886 89999999999999997 788888999999999976 777777776 56788899999999986
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=286.12 Aligned_cols=305 Identities=18% Similarity=0.139 Sum_probs=209.9
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCccc-CCcCc-CCCCCcEEECcCCcccccCChhhh
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGN-MPSSL-NLSSLKHLYLRKNGFNGPIPNALF 82 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~-~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~ 82 (420)
.+|. ..++|++|||++|.+++..|..|+++++|++|+|++|...+. .|.+| ++++|++|+|++|++++..|++|.
T Consensus 18 ~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 18 QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 3666 347889999999999888888899999999999999955544 47778 899999999999999888888999
Q ss_pred CCCCCcEEecccCcccccCCcC--CCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeCcCCccccCCCccc-----c
Q 038779 83 RSSELLTLDLTDNHFSGRIPHQ--INTLSNLRVLLLRGNYLQGPIP-NQLCELQKLGIMDLSHNRFNGSIPSCL-----T 154 (420)
Q Consensus 83 ~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~ 154 (420)
++++|++|+|++|.+++..|.. |..+++|++|+|++|.+++..+ ..|+++++|++|++++|.+.+..+..+ .
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 9999999999999988755554 8889999999999999887655 578899999999999998887777655 3
Q ss_pred cccccccCCcccccccccchhhccCCC-CCcccCcccccc----------------------------------------
Q 038779 155 SVSFWSQGKNDLYGIELNLEWDLGAGA-AGTYDNSNLEMY---------------------------------------- 193 (420)
Q Consensus 155 ~l~~l~~~~n~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------------------------- 193 (420)
+++.+.+..|.+............... ...+..+.+..+
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 456666677666543221110000000 000111111100
Q ss_pred -cCCCCCCCCCCcceEEEEeccCc---cccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhh
Q 038779 194 -LSNGAHGPPGQHVEVEFVTKNRN---ELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESF 269 (420)
Q Consensus 194 -~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 269 (420)
....+.+.............+.. .......+++|+.|+|++|++++..+..|..+++|++|+|++|.+++..|..|
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 00000000000111111111111 11223446778888888888887777778888888888888888887777788
Q ss_pred hccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCccc
Q 038779 270 FNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGL 312 (420)
Q Consensus 270 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 312 (420)
.++++|+.|++++|++++..+..|..+++|++|++++|.+++.
T Consensus 335 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 8888888888888888877777788888888888888887654
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=5.5e-32 Score=262.66 Aligned_cols=249 Identities=24% Similarity=0.264 Sum_probs=221.7
Q ss_pred CCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecc
Q 038779 15 VLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLT 93 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 93 (420)
..+.++.+++.++ .+|..+. ++++.|+|++|+++++.+..| ++++|++|+|++|++++..+.+|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678899999998 6776654 689999999999999999999 99999999999999998888999999999999999
Q ss_pred cCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCc-ccccccccccCCccccccccc
Q 038779 94 DNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPS-CLTSVSFWSQGKNDLYGIELN 172 (420)
Q Consensus 94 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~l~~~~n~l~~~~~~ 172 (420)
+|+++++.+..|..+++|++|+|++|+++...+..|..+++|+.|++++|...+.++. .+.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~------------------ 182 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE------------------ 182 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT------------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhh------------------
Confidence 9999988778899999999999999999988888999999999999998654333332 222
Q ss_pred chhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCC
Q 038779 173 LEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVR 252 (420)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 252 (420)
.+++|+.|++++|+++ .+| .+..+++|+
T Consensus 183 --------------------------------------------------~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 183 --------------------------------------------------GLSNLRYLNLAMCNLR-EIP-NLTPLIKLD 210 (440)
T ss_dssp --------------------------------------------------TCSSCCEEECTTSCCS-SCC-CCTTCSSCC
T ss_pred --------------------------------------------------cccccCeecCCCCcCc-ccc-ccCCCcccC
Confidence 2788999999999998 455 478999999
Q ss_pred EEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CCcCCccCcccccCCc
Q 038779 253 SLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KGQFAIFDESNYRGNI 331 (420)
Q Consensus 253 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~l~~~~~~~n~ 331 (420)
.|+|++|.+++..|..|.++++|+.|++++|++++..+..|..+++|++|+|++|+++...+. ...+..++.+++.+||
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 999999999988899999999999999999999999999999999999999999999988776 4678899999999999
Q ss_pred CCcCC
Q 038779 332 HLCGS 336 (420)
Q Consensus 332 ~~c~~ 336 (420)
+.|++
T Consensus 291 ~~CdC 295 (440)
T 3zyj_A 291 WNCNC 295 (440)
T ss_dssp EECSS
T ss_pred ccCCC
Confidence 99965
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-32 Score=275.55 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=97.7
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
+||..+. ++|++|++++|++++..|..|+++++|++|++++|++++..|+.| .+++|++|++++|++++..+..|.+
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 3565553 567777777777776666777777777777777777777666767 7777777777777777666666777
Q ss_pred CCCCcEEecccCccccc-CCcCCCCCCCCcEEEccccc-ccccCCccccCCCCCcEEeCcCCccccCCCc
Q 038779 84 SSELLTLDLTDNHFSGR-IPHQINTLSNLRVLLLRGNY-LQGPIPNQLCELQKLGIMDLSHNRFNGSIPS 151 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 151 (420)
+++|++|+|++|.+++. .|..|+++++|++|++++|. +....+..|.++++|++|++++|.+.+..|.
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 77777777777777642 35566777777777777776 3333335666667777777776666654443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-32 Score=275.82 Aligned_cols=314 Identities=16% Similarity=0.116 Sum_probs=232.6
Q ss_pred cCCcc-ccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhh
Q 038779 5 HIPSW-IGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALF 82 (420)
Q Consensus 5 ~ip~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~ 82 (420)
.+|+. |..+++|++|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..| ++++|++|+|++|.+++..+..|.
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 45554 6789999999999999999888899999999999999999999999998 999999999999999977777789
Q ss_pred CCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccC
Q 038779 83 RSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQG 162 (420)
Q Consensus 83 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~ 162 (420)
++++|++|+|++|.+++..|..|..+++|++|++++|.+++.. +..+++|+.|++++|.+.+.. ...++..|.+.
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~--~~~~L~~L~ls 219 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLA--IPIAVEELDAS 219 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEE--CCTTCSEEECC
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccccc--CCchhheeecc
Confidence 9999999999999999999999999999999999999998653 456677777777777776321 12345555666
Q ss_pred CcccccccccchhhccCCCCCcccCcccccccCCCCCC--CCCCcceEEEEeccC--ccccCCccccCCCeEEccCCccc
Q 038779 163 KNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHG--PPGQHVEVEFVTKNR--NELYNGSNLDYMSGLDLSCNELT 238 (420)
Q Consensus 163 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~l~~L~~L~Ls~n~l~ 238 (420)
+|.+...+..... .+..+.+..+.....+. .......+....... ........+++|+.|+|++|.++
T Consensus 220 ~n~l~~~~~~~~~--------~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 220 HNSINVVRGPVNV--------ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp SSCCCEEECSCCS--------CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred CCcccccccccCC--------CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 6555443322110 01111111110000000 000011111111111 01122345889999999999999
Q ss_pred cCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCc
Q 038779 239 GGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQ 318 (420)
Q Consensus 239 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 318 (420)
+ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++.. +..++.|++|++++|++.|.+.. ..
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~ 365 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-AL 365 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HH
T ss_pred C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HH
Confidence 5 5667778999999999999999 68888999999999999999998653 67788999999999999998633 34
Q ss_pred CCccCcccccCCcCCcCCC
Q 038779 319 FAIFDESNYRGNIHLCGSI 337 (420)
Q Consensus 319 ~~~l~~~~~~~n~~~c~~~ 337 (420)
+..+....+.+++..|+.+
T Consensus 366 ~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 366 FRNVARPAVDDADQHCKID 384 (597)
T ss_dssp TTTCCTTTBCCCCCCCCTT
T ss_pred HHHHhhhccccccccCCcc
Confidence 5566666778888888653
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.1e-32 Score=274.92 Aligned_cols=337 Identities=18% Similarity=0.135 Sum_probs=228.5
Q ss_pred ceecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChh
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNA 80 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 80 (420)
|++-.|.+|.++++|++|+|++|+|+++.|++|.++++|++|+|++|+++++.++.| ++++|++|++++|++++..+..
T Consensus 64 i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 143 (635)
T 4g8a_A 64 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 143 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh
Confidence 455456789999999999999999998888999999999999999999999888899 9999999999999999888888
Q ss_pred hhCCCCCcEEecccCccccc-CCcCCCCCCCCcEEEcccccccccCCccccCCCC-------------------------
Q 038779 81 LFRSSELLTLDLTDNHFSGR-IPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQK------------------------- 134 (420)
Q Consensus 81 ~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~------------------------- 134 (420)
|.++++|++|+|++|.+++. .|..++.+++|++|++++|++++..+..|..+.+
T Consensus 144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~ 223 (635)
T 4g8a_A 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 223 (635)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc
Confidence 99999999999999999864 5788899999999999999887655544432221
Q ss_pred --------------------------------------------------------------------------------
Q 038779 135 -------------------------------------------------------------------------------- 134 (420)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (420)
T Consensus 224 ~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 303 (635)
T 4g8a_A 224 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN 303 (635)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG
T ss_pred hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhh
Confidence
Q ss_pred --------------------------CcEEeCcCCccccCCCc----------------------ccccccccccCCccc
Q 038779 135 --------------------------LGIMDLSHNRFNGSIPS----------------------CLTSVSFWSQGKNDL 166 (420)
Q Consensus 135 --------------------------L~~L~L~~N~l~~~~p~----------------------~l~~l~~l~~~~n~l 166 (420)
|+.|++.+|.+.+..+. .+.+++.+.+..|.+
T Consensus 304 ~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 383 (635)
T 4g8a_A 304 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 383 (635)
T ss_dssp GGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCC
T ss_pred hhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccc
Confidence 12222222221110000 012222333333333
Q ss_pred ccccccc-------------------------hhhcc--------------CCCCCccc------Ccccccc-cCCCCCC
Q 038779 167 YGIELNL-------------------------EWDLG--------------AGAAGTYD------NSNLEMY-LSNGAHG 200 (420)
Q Consensus 167 ~~~~~~~-------------------------~~~~~--------------~~~~~~~~------~~~~~~~-~~~~~~~ 200 (420)
....... +.... ......+. ...+... .....+.
T Consensus 384 ~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~ 463 (635)
T 4g8a_A 384 SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463 (635)
T ss_dssp BEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred ccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence 2110000 00000 00000011 1111111 0001111
Q ss_pred CCC--CcceEEEEeccC----ccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCC
Q 038779 201 PPG--QHVEVEFVTKNR----NELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKM 274 (420)
Q Consensus 201 ~~~--~~~~~~~~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 274 (420)
... ..........+. .....+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|.++++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 111 011111111111 11123455889999999999999999999999999999999999999888999999999
Q ss_pred CCEEeCCCCcCcccCCccccCC-CCCCEEEcccCcCcccCCCCCcCCc-c---CcccccCCcCCcCCCCC
Q 038779 275 TESLDLSYNRLRGRVSPRLTEL-NFLSNFNVSYNNLSGLVPDKGQFAI-F---DESNYRGNIHLCGSIIN 339 (420)
Q Consensus 275 L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~~-l---~~~~~~~n~~~c~~~~~ 339 (420)
|++|+|++|+|++..|..+..+ ++|++|++++|+|.|.|.- .+|.. + ...........|..|..
T Consensus 544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~-~~~~~wl~~~~~~~~~~~~~~C~~P~~ 612 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKDQRQLLVEVERMECATPSD 612 (635)
T ss_dssp CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG-HHHHHHHHHTTTTBSCGGGCBBCSSTT
T ss_pred CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc-HHHHHHHHhCCCccCCCCCceeCCchH
Confidence 9999999999999999999988 6899999999999999953 22221 1 11112223467877654
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.1e-31 Score=247.65 Aligned_cols=273 Identities=17% Similarity=0.199 Sum_probs=227.1
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.+|..+. +.+++|++++|.+++..+..|+++++|++|++++|.+++..|..| .+++|++|++++|+++ .+|..+.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~- 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP- 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC-
T ss_pred ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc-
Confidence 4666554 689999999999998888899999999999999999999989999 9999999999999998 4555444
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccc--cCCccccCCCCCcEEeCcCCccccCCCccccccccccc
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQG--PIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQ 161 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~ 161 (420)
++|++|++++|.+++..+..|.++++|++|++++|.++. ..+..|..+++|+.|++++|.+.........+++.|.+
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l 199 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 199 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEEC
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEEC
Confidence 799999999999998888889999999999999999964 67888999999999999999998433334467888888
Q ss_pred CCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCC
Q 038779 162 GKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGI 241 (420)
Q Consensus 162 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 241 (420)
.+|.+.......+ ..+++|+.|++++|.+++..
T Consensus 200 ~~n~l~~~~~~~~-----------------------------------------------~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 200 DGNKITKVDAASL-----------------------------------------------KGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp TTSCCCEECTGGG-----------------------------------------------TTCTTCCEEECCSSCCCEEC
T ss_pred CCCcCCccCHHHh-----------------------------------------------cCCCCCCEEECCCCcCceeC
Confidence 8887765432211 22789999999999999888
Q ss_pred CccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccC------CCCCCEEEcccCcCcccC--
Q 038779 242 PVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTE------LNFLSNFNVSYNNLSGLV-- 313 (420)
Q Consensus 242 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~-- 313 (420)
+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.++.+++++|++....
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~ 311 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccC
Confidence 888999999999999999999 78888999999999999999999887777754 378999999999997532
Q ss_pred CC-CCcCCccCcccccCC
Q 038779 314 PD-KGQFAIFDESNYRGN 330 (420)
Q Consensus 314 p~-~~~~~~l~~~~~~~n 330 (420)
|. ...+..++.+++++|
T Consensus 312 ~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGGTTCCCGGGEEC---
T ss_pred ccccccccceeEEEeccc
Confidence 22 234456666777666
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-31 Score=274.13 Aligned_cols=323 Identities=18% Similarity=0.142 Sum_probs=205.6
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
+||..+. +++++|+|++|.+++..+..|+++++|++|++++|.+++..|+.| ++++|++|++++|++++..+.+|.+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 4777765 789999999999998888889999999999999999999889988 9999999999999999776678999
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccc-----ccccc
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCL-----TSVSF 158 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~ 158 (420)
+++|++|+|++|.++++.|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+ .+++.
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 9999999999999998888899999999999999999998888899999999999999999986655432 56788
Q ss_pred cccCCcccccccccchhhccCCCCCcccCcccccccCCCCC-C-CCCCcceEEEEeccCc---cccCCccc--cCCCeEE
Q 038779 159 WSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAH-G-PPGQHVEVEFVTKNRN---ELYNGSNL--DYMSGLD 231 (420)
Q Consensus 159 l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~---~~~~~~~l--~~L~~L~ 231 (420)
|.+..|.+.......+..........+....+......... . .......+. ...+.. .......+ ++|+.|+
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~-L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS-LSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE-CTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE-ccCCcccccChhHhhccCcCCCCEEE
Confidence 88888887766544332211100000000000000000000 0 000000000 000000 00011112 2366666
Q ss_pred ccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcc-----cCC----ccccCCCCCCEE
Q 038779 232 LSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRG-----RVS----PRLTELNFLSNF 302 (420)
Q Consensus 232 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~----~~~~~l~~L~~L 302 (420)
+++|.+++..+..|+.+++|++|++++|.+++..|..|.++++|+.|++++|...+ .+| ..|..+++|++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 66666666666666666666666666666665555555555555555555543321 111 134445555555
Q ss_pred EcccCcCcccCCC-CCcCCccCcccccCC
Q 038779 303 NVSYNNLSGLVPD-KGQFAIFDESNYRGN 330 (420)
Q Consensus 303 ~L~~N~l~~~~p~-~~~~~~l~~~~~~~n 330 (420)
++++|++++..+. ...++.++.+++.+|
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCC
Confidence 5555555544433 233344444444433
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=266.06 Aligned_cols=320 Identities=19% Similarity=0.117 Sum_probs=222.0
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.||..+. ++|++|++++|.+++..|+.|..+++|++|+|++|++++..|+.| ++++|++|++++|+++. +|.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--c
Confidence 5888776 899999999999998888899999999999999999999989999 99999999999999984 5554 8
Q ss_pred CCCCcEEecccCcccc-cCCcCCCCCCCCcEEEcccccccccCCccccCCCCC--cEEeCcCCcc--ccCCCccccccc-
Q 038779 84 SSELLTLDLTDNHFSG-RIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKL--GIMDLSHNRF--NGSIPSCLTSVS- 157 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~p~~l~~l~- 157 (420)
+++|++|+|++|.+++ ..|..|+++++|++|++++|++++ ..+..+++| +.|++++|.+ .+..|..+..+.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc
Confidence 8999999999999987 468899999999999999999985 467778888 9999999998 666666555533
Q ss_pred ---ccccCCcccccccccc-------------------------------hhhccCC----------------------C
Q 038779 158 ---FWSQGKNDLYGIELNL-------------------------------EWDLGAG----------------------A 181 (420)
Q Consensus 158 ---~l~~~~n~l~~~~~~~-------------------------------~~~~~~~----------------------~ 181 (420)
.+.+..|.+....... +...... .
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh
Confidence 1122222211100000 0000000 0
Q ss_pred CCcccCcccccc-cCCCCCCCC-----CCcceEE----------------------------EEeccCccccC-CccccC
Q 038779 182 AGTYDNSNLEMY-LSNGAHGPP-----GQHVEVE----------------------------FVTKNRNELYN-GSNLDY 226 (420)
Q Consensus 182 ~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~----------------------------~~~~~~~~~~~-~~~l~~ 226 (420)
...+..+.+... ..+..+... .....+. ....+...... ...+++
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 325 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence 001111111111 111111111 1111111 01111111111 145788
Q ss_pred CCeEEccCCccccCCCccccCccCCCEEecCCccccc--ccchhhhccCCCCEEeCCCCcCcccCCc-cccCCCCCCEEE
Q 038779 227 MSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSG--SIPESFFNLKMTESLDLSYNRLRGRVSP-RLTELNFLSNFN 303 (420)
Q Consensus 227 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ 303 (420)
|++|++++|++++..|..++.+++|+.|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|++|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 9999999999998888899999999999999999986 5567889999999999999999874554 477788888888
Q ss_pred cccCcCcccCCCCCcCCccCcccccCCcCC
Q 038779 304 VSYNNLSGLVPDKGQFAIFDESNYRGNIHL 333 (420)
Q Consensus 304 L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 333 (420)
+++|++++..|.... +.++.+++++|...
T Consensus 406 Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP-PRIKVLDLHSNKIK 434 (520)
T ss_dssp CCSSCCCGGGGGSCC-TTCCEEECCSSCCC
T ss_pred CcCCCCCcchhhhhc-ccCCEEECCCCccc
Confidence 888888766544211 45666666666543
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.98 E-value=1.2e-32 Score=259.52 Aligned_cols=263 Identities=17% Similarity=0.132 Sum_probs=212.8
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.||..+. ++|++|++++|.+++..+..|.++++|+.|++++|.+++..|..| ++++|++|++++|++++..+..|.+
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 122 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTT
T ss_pred ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCC
Confidence 4777665 589999999999998777789999999999999999999888889 9999999999999999766666999
Q ss_pred CCCCcEEecccCcccccCC-cCCCCCCCCcEEEcccc-cccccCCccccCCCCCcEEeCcCCccccCCCccccc---ccc
Q 038779 84 SSELLTLDLTDNHFSGRIP-HQINTLSNLRVLLLRGN-YLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTS---VSF 158 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~---l~~ 158 (420)
+++|++|+|++|++++..+ ..|..+++|++|++++| .++...+..|..+++|+.|++++|.+.+..|..+.. ++.
T Consensus 123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 202 (353)
T 2z80_A 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202 (353)
T ss_dssp CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCe
Confidence 9999999999999985544 47999999999999999 577777888999999999999999998776766544 455
Q ss_pred cccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccc
Q 038779 159 WSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELT 238 (420)
Q Consensus 159 l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 238 (420)
|.+.+|.+...+... ...+++|+.|++++|.++
T Consensus 203 L~l~~n~l~~~~~~~-----------------------------------------------~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 203 LILHMKQHILLLEIF-----------------------------------------------VDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEEECSCSTTHHHHH-----------------------------------------------HHHTTTEEEEEEESCBCT
T ss_pred ecCCCCccccchhhh-----------------------------------------------hhhcccccEEECCCCccc
Confidence 555665553322110 012678999999999998
Q ss_pred cCCCcccc---CccCCCEEecCCccccc----ccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcc
Q 038779 239 GGIPVEIG---ELQNVRSLNLSHNYLSG----SIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSG 311 (420)
Q Consensus 239 ~~~~~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 311 (420)
+..+..+. ....++.++++++.+++ .+|..+..+++|++|++++|+++...+..|..+++|++|++++|++.|
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 76555433 35677888888887765 477889999999999999999995544456899999999999999999
Q ss_pred cCCCC
Q 038779 312 LVPDK 316 (420)
Q Consensus 312 ~~p~~ 316 (420)
.||..
T Consensus 316 ~~~~l 320 (353)
T 2z80_A 316 SCPRI 320 (353)
T ss_dssp CHHHH
T ss_pred cCCCc
Confidence 88753
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=1.4e-31 Score=249.29 Aligned_cols=226 Identities=17% Similarity=0.234 Sum_probs=206.6
Q ss_pred CCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEe
Q 038779 13 FPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLD 91 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 91 (420)
.++++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+ .+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 478999999999999 78888999999999999999999 788888 9999999999999999 7799999999999999
Q ss_pred cccCcccccCCcCCCC---------CCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccC
Q 038779 92 LTDNHFSGRIPHQINT---------LSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQG 162 (420)
Q Consensus 92 L~~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~ 162 (420)
|++|++.+.+|..+.. +++|++|++++|+++ .+|..+..+++|++|++++|.+. .+|..+..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~------- 227 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH------- 227 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-------
Confidence 9999888888887654 999999999999999 78889999999999999999998 45544433
Q ss_pred CcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCC
Q 038779 163 KNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIP 242 (420)
Q Consensus 163 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 242 (420)
+++|+.|++++|++.+.+|
T Consensus 228 -------------------------------------------------------------l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 228 -------------------------------------------------------------LPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp -------------------------------------------------------------CTTCCEEECTTCTTCCBCC
T ss_pred -------------------------------------------------------------CCCCCEEECcCCcchhhhH
Confidence 6789999999999999999
Q ss_pred ccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcc
Q 038779 243 VEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSG 311 (420)
Q Consensus 243 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 311 (420)
..++.+++|+.|+|++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.+++..|.+..
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876643
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.98 E-value=1.1e-31 Score=248.01 Aligned_cols=249 Identities=21% Similarity=0.228 Sum_probs=218.3
Q ss_pred CCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCccccc--CChhhhCCCCCcEEec
Q 038779 16 LAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGP--IPNALFRSSELLTLDL 92 (420)
Q Consensus 16 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L 92 (420)
-+.++.+++.++ .+|..+. ++|++|++++|.++.+.+..| .+++|++|++++|+++.. .+..+..+++|++|+|
T Consensus 9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 368999999998 5666543 699999999999997777778 999999999999999843 3678889999999999
Q ss_pred ccCcccccCCcCCCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccc
Q 038779 93 TDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIP-NQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIEL 171 (420)
Q Consensus 93 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~ 171 (420)
++|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------- 148 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG---------------- 148 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT----------------
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc----------------
Confidence 999998 467779999999999999999997665 68999999999999999998665554432
Q ss_pred cchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCcccc-CCCccccCccC
Q 038779 172 NLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTG-GIPVEIGELQN 250 (420)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~ 250 (420)
+++|++|++++|.+++ ..|..+..+++
T Consensus 149 ----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 149 ----------------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp ----------------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ----------------------------------------------------CcCCCEEECCCCccccccchhHHhhCcC
Confidence 6789999999999986 57889999999
Q ss_pred CCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CCcC-CccCccccc
Q 038779 251 VRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KGQF-AIFDESNYR 328 (420)
Q Consensus 251 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~-~~l~~~~~~ 328 (420)
|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++..|. ...+ ..++.+++.
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 99999999999988899999999999999999999988888899999999999999999998876 3455 488999999
Q ss_pred CCcCCcCC
Q 038779 329 GNIHLCGS 336 (420)
Q Consensus 329 ~n~~~c~~ 336 (420)
+|++.|++
T Consensus 257 ~N~~~~~c 264 (306)
T 2z66_A 257 QNDFACTC 264 (306)
T ss_dssp TCCEECSG
T ss_pred CCCeeccc
Confidence 99999854
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.98 E-value=8.6e-32 Score=246.09 Aligned_cols=240 Identities=22% Similarity=0.219 Sum_probs=208.7
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCc-ccccCChhhh
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNG-FNGPIPNALF 82 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~ 82 (420)
.+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..| .+++|++|++++|+ ++...+..|.
T Consensus 25 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 356544 4689999999999998888899999999999999999999989999 99999999999997 8877789999
Q ss_pred CCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccC
Q 038779 83 RSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQG 162 (420)
Q Consensus 83 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~ 162 (420)
.+++|++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------- 175 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG------- 175 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-------
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC-------
Confidence 9999999999999999888999999999999999999999887788999999999999999997443333332
Q ss_pred CcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCC
Q 038779 163 KNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIP 242 (420)
Q Consensus 163 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 242 (420)
+++|+.|++++|.+++..|
T Consensus 176 -------------------------------------------------------------l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 176 -------------------------------------------------------------LHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp -------------------------------------------------------------CTTCCEEECCSSCCCEECT
T ss_pred -------------------------------------------------------------ccccCEEECCCCcccccCH
Confidence 6789999999999999989
Q ss_pred ccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC
Q 038779 243 VEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 243 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 315 (420)
..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+.. .-+..++.++.+.+.+.|..|.
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 99999999999999999999877788999999999999999987433321 1122345556788999988887
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=6.2e-31 Score=263.78 Aligned_cols=153 Identities=22% Similarity=0.165 Sum_probs=134.4
Q ss_pred CCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEeccc
Q 038779 16 LAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTD 94 (420)
Q Consensus 16 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 94 (420)
.+.++-++..++ .+|..+. ++++.|++++|.+++..+..| ++++|++|++++|++++..+++|.++++|++|+|++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 456788888888 5776554 589999999999999999899 999999999999999988889999999999999999
Q ss_pred CcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcccc-CCCccc---ccccccccCCccccccc
Q 038779 95 NHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNG-SIPSCL---TSVSFWSQGKNDLYGIE 170 (420)
Q Consensus 95 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~l---~~l~~l~~~~n~l~~~~ 170 (420)
|.+++..|.+|.++++|++|++++|++++..+..++.+++|++|++++|.+.+ .+|..+ .+|+.|++.+|.+....
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 99998888999999999999999999997777789999999999999999986 357665 46778888999887654
Q ss_pred c
Q 038779 171 L 171 (420)
Q Consensus 171 ~ 171 (420)
.
T Consensus 166 ~ 166 (570)
T 2z63_A 166 C 166 (570)
T ss_dssp G
T ss_pred H
Confidence 3
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.6e-30 Score=260.24 Aligned_cols=313 Identities=18% Similarity=0.113 Sum_probs=221.3
Q ss_pred CCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEe
Q 038779 13 FPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLD 91 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 91 (420)
+...+++++++|.+++ +|..+. ++|+.|++++|.+++..|..| ++++|++|++++|++++..|++|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 4455899999999995 776654 799999999999999888899 999999999999999999899999999999999
Q ss_pred cccCcccccCCcCCCCCCCCcEEEccccccccc-CCccccCCCCCcEEeCcCCccccCCCcccccc--cccccCCccc--
Q 038779 92 LTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGP-IPNQLCELQKLGIMDLSHNRFNGSIPSCLTSV--SFWSQGKNDL-- 166 (420)
Q Consensus 92 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~l~~~~n~l-- 166 (420)
|++|+++ .+|.. .+++|++|++++|++++. .|..|+++++|++|++++|.+.+.....+.++ +.+.+..|.+
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCC
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccc
Confidence 9999999 45555 899999999999999974 46899999999999999999987655666666 7888888776
Q ss_pred ccccccchhhcc----------------------------------C------------------C--------------
Q 038779 167 YGIELNLEWDLG----------------------------------A------------------G-------------- 180 (420)
Q Consensus 167 ~~~~~~~~~~~~----------------------------------~------------------~-------------- 180 (420)
.......+.... . .
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 222111111000 0 0
Q ss_pred ----------CCCcccCcccccc-cCCCCCCCC-----CCcceEE--EEec--------------------------cCc
Q 038779 181 ----------AAGTYDNSNLEMY-LSNGAHGPP-----GQHVEVE--FVTK--------------------------NRN 216 (420)
Q Consensus 181 ----------~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~--~~~~--------------------------~~~ 216 (420)
....+..+.+... ..+..+... .....+. .... +..
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 0001111112111 111222211 1111111 1111 111
Q ss_pred cccCC-ccccCCCeEEccCCccccCCCccccCccCCCEEecCCccccc--ccchhhhccCCCCEEeCCCCcCcccCCc-c
Q 038779 217 ELYNG-SNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSG--SIPESFFNLKMTESLDLSYNRLRGRVSP-R 292 (420)
Q Consensus 217 ~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~ 292 (420)
..... ..+++|+.|++++|.+++..|..++.+++|+.|++++|++++ .+|..+.++++|++|++++|++++.+|. .
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 11111 457889999999999998888899999999999999999986 3356788999999999999999874444 5
Q ss_pred ccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCcC
Q 038779 293 LTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIH 332 (420)
Q Consensus 293 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 332 (420)
+..+++|++|++++|++++..|.... +.++.+++++|..
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l 462 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRI 462 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCC
T ss_pred hcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcC
Confidence 77777777777777777665544211 4555666666543
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=8.7e-32 Score=268.80 Aligned_cols=165 Identities=21% Similarity=0.199 Sum_probs=138.1
Q ss_pred ceecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCccccc-CCh
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGP-IPN 79 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~ 79 (420)
+++..|..|+++++|++|++++|++++..|++|+.+++|++|++++|++++..|..| ++++|++|++++|++++. .|.
T Consensus 38 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 117 (549)
T 2z81_A 38 ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117 (549)
T ss_dssp CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence 556677889999999999999999998888899999999999999999998888778 899999999999999863 567
Q ss_pred hhhCCCCCcEEecccCc-ccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcc----cc
Q 038779 80 ALFRSSELLTLDLTDNH-FSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSC----LT 154 (420)
Q Consensus 80 ~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~----l~ 154 (420)
.|.++++|++|++++|. ++.+.+..|.++++|++|++++|.+++..|..+..+++|+.|++++|.+. ..|.. +.
T Consensus 118 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~ 196 (549)
T 2z81_A 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILS 196 (549)
T ss_dssp SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTT
T ss_pred hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcc
Confidence 88899999999999998 55454578999999999999999999888999999999999999999875 44432 45
Q ss_pred cccccccCCcccc
Q 038779 155 SVSFWSQGKNDLY 167 (420)
Q Consensus 155 ~l~~l~~~~n~l~ 167 (420)
+++.|++.+|++.
T Consensus 197 ~L~~L~L~~n~l~ 209 (549)
T 2z81_A 197 SVRYLELRDTNLA 209 (549)
T ss_dssp TBSEEEEESCBCT
T ss_pred cccEEEccCCccc
Confidence 6666666665543
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=8.5e-32 Score=253.81 Aligned_cols=277 Identities=19% Similarity=0.156 Sum_probs=196.9
Q ss_pred cCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcE
Q 038779 11 GNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLT 89 (420)
Q Consensus 11 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 89 (420)
..++.....+.+++.++ .+|..+. ++|+.|++++|.+++..+..| .+++|++|++++|++++..+.+|.++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34566778999999999 5776654 599999999999998888788 9999999999999999888899999999999
Q ss_pred EecccCcccccCCcCCCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeCcCCc-cccCCCccccc---ccccccCCc
Q 038779 90 LDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIP-NQLCELQKLGIMDLSHNR-FNGSIPSCLTS---VSFWSQGKN 164 (420)
Q Consensus 90 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~---l~~l~~~~n 164 (420)
|+|++|.+++..+..|.++++|++|++++|+++...+ ..|..+++|++|++++|. +.+..+..+.. ++.|.+.+|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 9999999997666669999999999999999996544 589999999999999994 55444444433 333333333
Q ss_pred ccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCcc
Q 038779 165 DLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVE 244 (420)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 244 (420)
.+....... ...+++|+.|++++|.++...+..
T Consensus 185 ~l~~~~~~~-----------------------------------------------l~~l~~L~~L~l~~n~l~~~~~~~ 217 (353)
T 2z80_A 185 DLQSYEPKS-----------------------------------------------LKSIQNVSHLILHMKQHILLLEIF 217 (353)
T ss_dssp TCCEECTTT-----------------------------------------------TTTCSEEEEEEEECSCSTTHHHHH
T ss_pred CcCccCHHH-----------------------------------------------HhccccCCeecCCCCccccchhhh
Confidence 332211100 011445555555555554322222
Q ss_pred ccCccCCCEEecCCcccccccchhh---hccCCCCEEeCCCCcCcc----cCCccccCCCCCCEEEcccCcCcccCCCC-
Q 038779 245 IGELQNVRSLNLSHNYLSGSIPESF---FNLKMTESLDLSYNRLRG----RVSPRLTELNFLSNFNVSYNNLSGLVPDK- 316 (420)
Q Consensus 245 ~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~- 316 (420)
+..+++|+.|++++|.+++..+..+ .....++.++++++.+++ .+|..+..+++|++|++++|+++...+..
T Consensus 218 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 3345555555555555554333222 223445555555555543 24556788999999999999999665553
Q ss_pred CcCCccCcccccCCcCCcCCC
Q 038779 317 GQFAIFDESNYRGNIHLCGSI 337 (420)
Q Consensus 317 ~~~~~l~~~~~~~n~~~c~~~ 337 (420)
..++.++.+++.+|++.|.++
T Consensus 298 ~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCCCCEEEeeCCCccCcCC
Confidence 678899999999999999653
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=7.8e-30 Score=239.81 Aligned_cols=300 Identities=18% Similarity=0.251 Sum_probs=165.8
Q ss_pred CCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEE
Q 038779 12 NFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTL 90 (420)
Q Consensus 12 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 90 (420)
.+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ + .+++|++|++++|+++. + ++|..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEE
Confidence 45666666666666653 33 25666666666666666664433 5 66666666666666653 2 246666666666
Q ss_pred ecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCC-cccccccccccCCcccccc
Q 038779 91 DLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIP-SCLTSVSFWSQGKNDLYGI 169 (420)
Q Consensus 91 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~l~~~~n~l~~~ 169 (420)
++++|.+++..+ +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ ..+.+++.+.+.+|.+...
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc
Confidence 666666654322 556666666666666444222 336666666666666666553221 2344455555555555443
Q ss_pred cccchhhccCCCCCcccCcccccccCCCCCC--CCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccC
Q 038779 170 ELNLEWDLGAGAAGTYDNSNLEMYLSNGAHG--PPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGE 247 (420)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 247 (420)
..- .. ...+....+.......... .......+...............+++|+.|++++|.+++. +.+..
T Consensus 193 ~~~--~~-----l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 193 SPL--AS-----LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp GGG--GG-----CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc--cC-----CCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhc
Confidence 320 00 0001111110000000000 0000001111110000001123467777777877777643 45677
Q ss_pred ccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccc
Q 038779 248 LQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNY 327 (420)
Q Consensus 248 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~ 327 (420)
+++|+.|++++|.+++. +.+..+++|+.|++++|++++..+..+..+++|++|++++|++++..| ...++.++.+++
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 340 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADF 340 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESS
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeeh
Confidence 77788888888877743 347777788888888887777777777777788888888888777665 556677777777
Q ss_pred cCCcC
Q 038779 328 RGNIH 332 (420)
Q Consensus 328 ~~n~~ 332 (420)
.+|+.
T Consensus 341 ~~N~i 345 (347)
T 4fmz_A 341 ANQVI 345 (347)
T ss_dssp SCC--
T ss_pred hhhcc
Confidence 77763
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.97 E-value=5.1e-30 Score=233.20 Aligned_cols=230 Identities=23% Similarity=0.198 Sum_probs=189.3
Q ss_pred EEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCc
Q 038779 18 VMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNH 96 (420)
Q Consensus 18 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 96 (420)
..+.++..++ .+|..+. ++|++|++++|.+++..+..| .+++|++|++++|++++..+.+|.++++|++|+|++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4556666666 4665553 578899999999888877778 88899999999998887777788888999999999999
Q ss_pred ccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccC-CCcccccccccccCCcccccccccchh
Q 038779 97 FSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGS-IPSCLTSVSFWSQGKNDLYGIELNLEW 175 (420)
Q Consensus 97 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~l~~~~n~l~~~~~~~~~ 175 (420)
+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+. +|..+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~-------------------- 147 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-------------------- 147 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG--------------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc--------------------
Confidence 9888888888999999999999999877777888999999999999988742 4555443
Q ss_pred hccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCC---
Q 038779 176 DLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVR--- 252 (420)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~--- 252 (420)
+++|+.|++++|++++..+..+..+++|+
T Consensus 148 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 148 ------------------------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred ------------------------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 67888999999999887777887777777
Q ss_pred -EEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcC
Q 038779 253 -SLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQF 319 (420)
Q Consensus 253 -~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 319 (420)
.|++++|.+++..+..+.. .+|+.|++++|++++..+..+..+++|++|++++|+++|.||....+
T Consensus 180 l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp EEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred eeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 8999999999655555544 58999999999999877778899999999999999999999865444
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=5e-30 Score=238.85 Aligned_cols=211 Identities=21% Similarity=0.255 Sum_probs=195.0
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.+|+.++++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+ .+++|++|++++|++.+.+|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 68999999999999999999999 89999999999999999999999 678888 9999999999999888888887764
Q ss_pred ---------CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccc
Q 038779 84 ---------SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLT 154 (420)
Q Consensus 84 ---------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 154 (420)
+++|++|+|++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|++|++++|.+.+.+|..+.
T Consensus 173 ~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 173 TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 999999999999998 788899999999999999999995 667899999999999999999888877654
Q ss_pred cccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccC
Q 038779 155 SVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSC 234 (420)
Q Consensus 155 ~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 234 (420)
. +++|+.|++++
T Consensus 251 ~--------------------------------------------------------------------l~~L~~L~L~~ 262 (328)
T 4fcg_A 251 G--------------------------------------------------------------------RAPLKRLILKD 262 (328)
T ss_dssp C--------------------------------------------------------------------CCCCCEEECTT
T ss_pred C--------------------------------------------------------------------CCCCCEEECCC
Confidence 3 67899999999
Q ss_pred CccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcc
Q 038779 235 NELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRG 287 (420)
Q Consensus 235 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 287 (420)
|++.+.+|..+..+++|+.|+|++|.+.+.+|..+.++++|+.+++..|.+..
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999887663
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.4e-31 Score=258.28 Aligned_cols=244 Identities=18% Similarity=0.125 Sum_probs=202.9
Q ss_pred CCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEe
Q 038779 13 FPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLD 91 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 91 (420)
+++|+.|+|++|.+++..|..|+.+++|++|+|++|.+++..| + .+++|++|++++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3489999999999998888999999999999999999998776 7 99999999999999985433 38999999
Q ss_pred cccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccc
Q 038779 92 LTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIEL 171 (420)
Q Consensus 92 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~ 171 (420)
+++|.+++..+.. +++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..|..+..
T Consensus 106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---------------- 166 (487)
T 3oja_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------- 166 (487)
T ss_dssp CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----------------
T ss_pred CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----------------
Confidence 9999999776543 588999999999999988999999999999999999998766655431
Q ss_pred cchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCC
Q 038779 172 NLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNV 251 (420)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 251 (420)
.+++|+.|+|++|.+++..+ ...+++|
T Consensus 167 ---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L 193 (487)
T 3oja_A 167 ---------------------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKL 193 (487)
T ss_dssp ---------------------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTC
T ss_pred ---------------------------------------------------hCCcccEEecCCCccccccc--cccCCCC
Confidence 16789999999999996633 3468999
Q ss_pred CEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC--CCcCCccCccccc-
Q 038779 252 RSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD--KGQFAIFDESNYR- 328 (420)
Q Consensus 252 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~~l~~~~~~- 328 (420)
+.|+|++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.|.++. ...++.+..+...
T Consensus 194 ~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 194 KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp CEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred CEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 999999999996 45559999999999999999995 677789999999999999999854322 2334444445554
Q ss_pred ------CCcCCcCCC
Q 038779 329 ------GNIHLCGSI 337 (420)
Q Consensus 329 ------~n~~~c~~~ 337 (420)
++++.|.++
T Consensus 272 ~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 272 VKKLTGQNEEECTVP 286 (487)
T ss_dssp HHHHTSSSSCCCSST
T ss_pred cccccCCCcccccCC
Confidence 677777543
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=5.1e-29 Score=243.57 Aligned_cols=306 Identities=21% Similarity=0.232 Sum_probs=190.7
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCC
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
+|. +..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ + .+++|++|++++|++++..+ +..+
T Consensus 61 l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 133 (466)
T 1o6v_A 61 IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNL 133 (466)
T ss_dssp CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCC
Confidence 453 6778889999999998885443 8888889999999888887655 6 88888899998888885433 7888
Q ss_pred CCCcEEecccCcccccCC-------------------cCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcc
Q 038779 85 SELLTLDLTDNHFSGRIP-------------------HQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRF 145 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p-------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 145 (420)
++|++|++++|.+++... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+
T Consensus 134 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 134 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred CCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence 888888888888874311 1144455556666666665532 2355666666666666665
Q ss_pred ccCCC-cccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCC--CCCCcceEEEEeccCccccCCc
Q 038779 146 NGSIP-SCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHG--PPGQHVEVEFVTKNRNELYNGS 222 (420)
Q Consensus 146 ~~~~p-~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 222 (420)
.+..| ..+.+++.|.+.+|.+..... ... ...+..+.+........+. .......+..............
T Consensus 212 ~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~-----l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 284 (466)
T 1o6v_A 212 SDITPLGILTNLDELSLNGNQLKDIGT--LAS-----LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 284 (466)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCGG--GGG-----CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGT
T ss_pred cccccccccCCCCEEECCCCCcccchh--hhc-----CCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccccc
Confidence 54333 234455555556655544311 000 0111111111110000000 0000111111111111111133
Q ss_pred cccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 038779 223 NLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNF 302 (420)
Q Consensus 223 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 302 (420)
.+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++|++|
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 358 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 358 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence 46778888888888775443 6777888888888888876554 67788888888888888754 457788888888
Q ss_pred EcccCcCcccCCCCCcCCccCcccccCCcCCc
Q 038779 303 NVSYNNLSGLVPDKGQFAIFDESNYRGNIHLC 334 (420)
Q Consensus 303 ~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 334 (420)
++++|++++..| ...++.++.+++.+|++..
T Consensus 359 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 359 SAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred eCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 888888887776 6677778888888887665
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.97 E-value=3.2e-31 Score=246.01 Aligned_cols=244 Identities=18% Similarity=0.120 Sum_probs=190.9
Q ss_pred ccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCc
Q 038779 10 IGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELL 88 (420)
Q Consensus 10 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 88 (420)
+..+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++..+ + .+++|++|++++|++++.. ..++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 4456788999999999988777888889999999999998887665 6 8888999999999887433 337889
Q ss_pred EEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCccccc
Q 038779 89 TLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYG 168 (420)
Q Consensus 89 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~ 168 (420)
+|++++|.+++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..
T Consensus 103 ~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------- 166 (317)
T 3o53_A 103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA------------- 166 (317)
T ss_dssp EEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG-------------
T ss_pred EEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh-------------
Confidence 9999999988665543 577889999999998877778888889999999998887544443321
Q ss_pred ccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCc
Q 038779 169 IELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGEL 248 (420)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 248 (420)
.+++|+.|++++|.+++. + ....+
T Consensus 167 ------------------------------------------------------~l~~L~~L~L~~N~l~~~-~-~~~~l 190 (317)
T 3o53_A 167 ------------------------------------------------------SSDTLEHLNLQYNFIYDV-K-GQVVF 190 (317)
T ss_dssp ------------------------------------------------------GTTTCCEEECTTSCCCEE-E-CCCCC
T ss_pred ------------------------------------------------------ccCcCCEEECCCCcCccc-c-ccccc
Confidence 167899999999999865 3 23358
Q ss_pred cCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC--CCcCCccCccc
Q 038779 249 QNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD--KGQFAIFDESN 326 (420)
Q Consensus 249 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~~l~~~~ 326 (420)
++|++|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++|.+.. ...++.++.++
T Consensus 191 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 999999999999995 5556999999999999999999 4677788999999999999999854322 33455566666
Q ss_pred ccCCcCCc
Q 038779 327 YRGNIHLC 334 (420)
Q Consensus 327 ~~~n~~~c 334 (420)
+.++..+.
T Consensus 269 l~~~~~l~ 276 (317)
T 3o53_A 269 KQTVKKLT 276 (317)
T ss_dssp HHHHHHHH
T ss_pred CCCchhcc
Confidence 66444333
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=5.8e-31 Score=243.66 Aligned_cols=132 Identities=20% Similarity=0.240 Sum_probs=89.3
Q ss_pred cCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcc-cCCcCc--------CCCCCcEEECcCCcccccCChhh
Q 038779 11 GNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSG-NMPSSL--------NLSSLKHLYLRKNGFNGPIPNAL 81 (420)
Q Consensus 11 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~-~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~ 81 (420)
+..++|+.|++++|.+ .+|..+... |+.|+|++|.+.. ..|..+ ++++|++|++++|++++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3455677777777777 466655543 7777777777742 333322 36777777777777776666665
Q ss_pred --hCCCCCcEEecccCcccccCCcCCCCC-----CCCcEEEcccccccccCCccccCCCCCcEEeCcCCcccc
Q 038779 82 --FRSSELLTLDLTDNHFSGRIPHQINTL-----SNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNG 147 (420)
Q Consensus 82 --~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 147 (420)
..+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..|..|+.+++|++|++++|++.+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 6677777777777777755 6666555 777777777777776666777777777777777777653
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=6.2e-32 Score=250.22 Aligned_cols=234 Identities=21% Similarity=0.252 Sum_probs=182.8
Q ss_pred cCCccccCCCCCCEEEcccCcc-cccCChhhh-------cCCCCCEEEccCCcCcccCCcCc---CCCCCcEEECcCCcc
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRL-EGNIPPELS-------KFGGPLILDVSENCLSGNMPSSL---NLSSLKHLYLRKNGF 73 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~Ls~n~i~~~~~~~~---~l~~L~~L~L~~n~l 73 (420)
.+|..+... |+.|+|++|.+ ...+|..+. ++++|++|+|++|++++..|..+ .+++|++|++++|++
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 356665543 88889999988 445676665 78899999999999988777753 788999999999999
Q ss_pred cccCChhhhCC-----CCCcEEecccCcccccCCcCCCCCCCCcEEEccccccccc--CCccc--cCCCCCcEEeCcCCc
Q 038779 74 NGPIPNALFRS-----SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGP--IPNQL--CELQKLGIMDLSHNR 144 (420)
Q Consensus 74 ~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~--~~l~~L~~L~L~~N~ 144 (420)
++. |..+..+ ++|++|+|++|++++..|..|+.+++|++|++++|++.+. .+..+ ..+++|++|++++|+
T Consensus 134 ~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 134 ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 876 7777777 8899999999999888888899999999999999987654 23334 788999999999998
Q ss_pred cccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccc
Q 038779 145 FNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNL 224 (420)
Q Consensus 145 l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (420)
+++ ++.....+. ..+
T Consensus 213 l~~-~~~~~~~~~----------------------------------------------------------------~~l 227 (312)
T 1wwl_A 213 MET-PSGVCSALA----------------------------------------------------------------AAR 227 (312)
T ss_dssp CCC-HHHHHHHHH----------------------------------------------------------------HTT
T ss_pred Ccc-hHHHHHHHH----------------------------------------------------------------hcC
Confidence 862 211100000 015
Q ss_pred cCCCeEEccCCccccCCC-ccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 225 DYMSGLDLSCNELTGGIP-VEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 225 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
++|+.|++++|++++..| ..+..+++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS 302 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence 788999999999987664 45667889999999999998 6777665 8899999999999866 55 88889999999
Q ss_pred cccCcCcc
Q 038779 304 VSYNNLSG 311 (420)
Q Consensus 304 L~~N~l~~ 311 (420)
+++|++++
T Consensus 303 L~~N~l~~ 310 (312)
T 1wwl_A 303 LKGNPFLD 310 (312)
T ss_dssp CTTCTTTC
T ss_pred ccCCCCCC
Confidence 99998875
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=9.3e-29 Score=240.31 Aligned_cols=265 Identities=15% Similarity=0.076 Sum_probs=194.4
Q ss_pred eecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhh
Q 038779 3 SGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNAL 81 (420)
Q Consensus 3 ~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~ 81 (420)
.+..|..++++++|++|++++|.+++. | .++.+++|++|++++|++++. | + .+++|++|++++|++++. + +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c
Confidence 344566788899999999999999964 5 689999999999999999975 3 7 899999999999999965 3 8
Q ss_pred hCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCC-Ccccccccccc
Q 038779 82 FRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSI-PSCLTSVSFWS 160 (420)
Q Consensus 82 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~l~ 160 (420)
..+++|++|++++|++++. | ++.+++|++|++++|++++. .++.+++|+.|++++|...+.+ ...+.+++.|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 176 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence 8999999999999999864 4 88999999999999999974 3889999999999999654444 34567788888
Q ss_pred cCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccC
Q 038779 161 QGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGG 240 (420)
Q Consensus 161 ~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 240 (420)
+..|++..++... ...+..+.+..+ .........+++|+.|++++|++++
T Consensus 177 ls~n~l~~l~l~~--------l~~L~~L~l~~N---------------------~l~~~~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 177 CSFNKITELDVSQ--------NKLLNRLNCDTN---------------------NITKLDLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp CCSSCCCCCCCTT--------CTTCCEEECCSS---------------------CCSCCCCTTCTTCSEEECCSSCCSC-
T ss_pred CCCCccceecccc--------CCCCCEEECcCC---------------------cCCeeccccCCCCCEEECcCCcccc-
Confidence 8888887754211 011111111111 1111122346788888888888886
Q ss_pred CCccccCccCCCEEecCCcccccccchhhhccC-------CCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccC
Q 038779 241 IPVEIGELQNVRSLNLSHNYLSGSIPESFFNLK-------MTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLV 313 (420)
Q Consensus 241 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 313 (420)
+| ++.+++|+.|++++|++++..+..+.++. +|+.|++++|.+.+.+| +..+++|++|++++|+..+.+
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 44 67788888888888888866544444443 44555555555544444 456788888888888776665
Q ss_pred CC
Q 038779 314 PD 315 (420)
Q Consensus 314 p~ 315 (420)
|.
T Consensus 303 ~~ 304 (457)
T 3bz5_A 303 DC 304 (457)
T ss_dssp EC
T ss_pred cc
Confidence 53
No 59
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=4.2e-28 Score=228.00 Aligned_cols=284 Identities=19% Similarity=0.241 Sum_probs=201.9
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCC
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
+|. +..+++|++|++++|.+++. +. +..+++|++|++++|.++.. + .+ .+++|++|++++|++++. +. +..+
T Consensus 59 ~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~-~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l 131 (347)
T 4fmz_A 59 IQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI-S-ALQNLTNLRELYLNEDNISDI-SP-LANL 131 (347)
T ss_dssp CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECTTSCCCCC-GG-GTTC
T ss_pred chh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc-h-HHcCCCcCCEEECcCCcccCc-hh-hccC
Confidence 443 77899999999999999854 43 88999999999999998864 3 46 899999999999999854 33 8889
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCC-cccccccccccCC
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIP-SCLTSVSFWSQGK 163 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~l~~~~ 163 (420)
++|++|++++|..... +..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ ..+.+++.+.+..
T Consensus 132 ~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV 208 (347)
T ss_dssp TTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred CceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeeccc
Confidence 9999999999965533 3448888999999999998875433 7888889999999888874332 2445566677777
Q ss_pred cccccccccchhhccCCCCCcccCcccccccCCCCCC--CCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCC
Q 038779 164 NDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHG--PPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGI 241 (420)
Q Consensus 164 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 241 (420)
|.+..... ... ...+..+.+..+.....+. .......+..........-....+++|+.|++++|.+++.
T Consensus 209 n~l~~~~~--~~~-----~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~- 280 (347)
T 4fmz_A 209 NQITDITP--VAN-----MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI- 280 (347)
T ss_dssp SCCCCCGG--GGG-----CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCCCch--hhc-----CCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-
Confidence 76665432 110 1111111111111001100 0001111111111111111234588999999999999864
Q ss_pred CccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCc
Q 038779 242 PVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLS 310 (420)
Q Consensus 242 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 310 (420)
+.+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 281 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 -SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred -hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 468899999999999999998899999999999999999999997766 889999999999999985
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=2.4e-28 Score=222.11 Aligned_cols=216 Identities=22% Similarity=0.190 Sum_probs=188.4
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
++|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..+..| .+++|++|++++|++++..+..|.+
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 4677664 579999999999998888899999999999999999999888889 9999999999999999888899999
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEccccccccc-CCccccCCCCCcEEeCcCCccccCCCcccccccccccC
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGP-IPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQG 162 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~ 162 (420)
+++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..|..+++|++|++++|++++..+..+..+..
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~---- 174 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ---- 174 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT----
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh----
Confidence 99999999999999988777899999999999999999874 5899999999999999999998665555544321
Q ss_pred CcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCC-eEEccCCccccCC
Q 038779 163 KNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMS-GLDLSCNELTGGI 241 (420)
Q Consensus 163 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~ 241 (420)
++.+. .|++++|.+++..
T Consensus 175 -------------------------------------------------------------L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 175 -------------------------------------------------------------MPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp -------------------------------------------------------------CTTCCEEEECCSSCCCEEC
T ss_pred -------------------------------------------------------------ccccceeeecCCCcccccC
Confidence 23333 7999999999776
Q ss_pred CccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCccc
Q 038779 242 PVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGR 288 (420)
Q Consensus 242 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 288 (420)
+..+.. .+|+.|++++|++++..+..|..+++|+.|++++|.++..
T Consensus 194 ~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 194 PGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp TTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 666654 5899999999999977777789999999999999999853
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=7.5e-28 Score=218.06 Aligned_cols=208 Identities=24% Similarity=0.253 Sum_probs=151.2
Q ss_pred CCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEccc
Q 038779 39 GPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRG 118 (420)
Q Consensus 39 ~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 118 (420)
+.+.++++++.++. +|..+. ++|++|++++|++++..+.+|.++++|++|+|++|.++.+.+..|.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCc-cCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45566666666663 333332 4566666666666655555666666777777777776655555666677777777777
Q ss_pred ccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCC
Q 038779 119 NYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGA 198 (420)
Q Consensus 119 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (420)
|++++..+..|..+++|++|++++|.+++..+..+..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence 7777666666677777777777777776443333322
Q ss_pred CCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEE
Q 038779 199 HGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESL 278 (420)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 278 (420)
+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|
T Consensus 132 -------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 132 -------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp -------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 5677788888888876666668888899999999999987777778999999999
Q ss_pred eCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCC
Q 038779 279 DLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDK 316 (420)
Q Consensus 279 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 316 (420)
++++|++++..+..+..+++|++|++++|++.|.|+..
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence 99999999777778889999999999999999998653
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=6.1e-28 Score=234.57 Aligned_cols=283 Identities=16% Similarity=0.089 Sum_probs=220.9
Q ss_pred ceecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChh
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNA 80 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 80 (420)
++| +| .++.+++|++|++++|.+++. | ++.+++|++|++++|++++. + + .+++|++|++++|++++. +
T Consensus 54 l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~-- 122 (457)
T 3bz5_A 54 ITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D-- 122 (457)
T ss_dssp CCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--
T ss_pred ccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--
Confidence 444 56 689999999999999999974 4 88999999999999999975 3 7 899999999999999964 4
Q ss_pred hhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccc
Q 038779 81 LFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWS 160 (420)
Q Consensus 81 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~ 160 (420)
+..+++|++|++++|++++. + ++.+++|++|++++|...+.+ .+..+++|+.|++++|++++.....+.+++.|.
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~ 197 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN 197 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEE
T ss_pred CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceeccccCCCCCEEE
Confidence 88999999999999999974 3 888999999999999655454 488899999999999999865445667788888
Q ss_pred cCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccC
Q 038779 161 QGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGG 240 (420)
Q Consensus 161 ~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 240 (420)
+..|.+....... ...+..+.+..+. ........+++|+.|++++|++++.
T Consensus 198 l~~N~l~~~~l~~--------l~~L~~L~Ls~N~---------------------l~~ip~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 198 CDTNNITKLDLNQ--------NIQLTFLDCSSNK---------------------LTEIDVTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CCSSCCSCCCCTT--------CTTCSEEECCSSC---------------------CSCCCCTTCTTCSEEECCSSCCSCC
T ss_pred CcCCcCCeecccc--------CCCCCEEECcCCc---------------------ccccCccccCCCCEEEeeCCcCCCc
Confidence 8888887753211 1111222222111 1111124478999999999999987
Q ss_pred CCccccCcc-------CCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCc--------cccCCCCCCEEEcc
Q 038779 241 IPVEIGELQ-------NVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSP--------RLTELNFLSNFNVS 305 (420)
Q Consensus 241 ~~~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~ 305 (420)
.+..+..++ +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. .+..+++|++|+++
T Consensus 249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~ 326 (457)
T 3bz5_A 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN 326 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred CHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence 666666555 56777788887776676 57889999999999986655543 25667899999999
Q ss_pred cCcCcccCCCCCcCCccCcccccCCcCC
Q 038779 306 YNNLSGLVPDKGQFAIFDESNYRGNIHL 333 (420)
Q Consensus 306 ~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 333 (420)
+|++++. +...++.++.+++.+|...
T Consensus 327 ~N~l~~l--~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 327 NTELTEL--DVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TCCCSCC--CCTTCTTCSEEECCSSCCC
T ss_pred CCccccc--ccccCCcCcEEECCCCCCC
Confidence 9999995 3677888999999999754
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.4e-29 Score=234.95 Aligned_cols=242 Identities=20% Similarity=0.134 Sum_probs=201.5
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEec
Q 038779 14 PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDL 92 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 92 (420)
.+++..+++.+.+....+..+..+++|+.|+|++|.+++..|..| .+++|++|++++|++++..+ |..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 456777888888876666667778899999999999998888888 99999999999999986554 889999999999
Q ss_pred ccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCccccccccc
Q 038779 93 TDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELN 172 (420)
Q Consensus 93 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~ 172 (420)
++|.+++.. ..++|++|++++|++++..+. .+++|+.|++++|++++..+..+..
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~----------------- 142 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC----------------- 142 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGG-----------------
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhc-----------------
Confidence 999998543 238999999999999866544 3678999999999998544444332
Q ss_pred chhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccc-cCccCC
Q 038779 173 LEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEI-GELQNV 251 (420)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L 251 (420)
+++|+.|++++|.+++..+..+ ..+++|
T Consensus 143 ---------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 143 ---------------------------------------------------RSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp ---------------------------------------------------GSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred ---------------------------------------------------cCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 6789999999999998777766 478999
Q ss_pred CEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCc
Q 038779 252 RSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNI 331 (420)
Q Consensus 252 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~ 331 (420)
++|+|++|.+++. +. ...+++|++|++++|++++..+ .+..+++|++|++++|+++..++....++.++.+++.+|+
T Consensus 172 ~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 172 EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 9999999999955 33 3358999999999999996544 5889999999999999999876667788899999999999
Q ss_pred CCcCC
Q 038779 332 HLCGS 336 (420)
Q Consensus 332 ~~c~~ 336 (420)
+.|+.
T Consensus 249 ~~~~~ 253 (317)
T 3o53_A 249 FHCGT 253 (317)
T ss_dssp CBHHH
T ss_pred ccCcC
Confidence 99853
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.5e-27 Score=231.72 Aligned_cols=100 Identities=24% Similarity=0.318 Sum_probs=58.5
Q ss_pred CCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeC
Q 038779 61 SSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDL 140 (420)
Q Consensus 61 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 140 (420)
++|++|++++|++++ +| .|.++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++.+++|+.|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 355555555555553 34 35556666666666666553 33322 356666666666664 34 4667777777777
Q ss_pred cCCccccCCCcccccccccccCCcccccc
Q 038779 141 SHNRFNGSIPSCLTSVSFWSQGKNDLYGI 169 (420)
Q Consensus 141 ~~N~l~~~~p~~l~~l~~l~~~~n~l~~~ 169 (420)
++|.+.+ +|....+++.|.+.+|.+..+
T Consensus 203 ~~N~l~~-l~~~~~~L~~L~l~~n~l~~l 230 (454)
T 1jl5_A 203 DNNSLKK-LPDLPLSLESIVAGNNILEEL 230 (454)
T ss_dssp CSSCCSS-CCCCCTTCCEEECCSSCCSSC
T ss_pred CCCcCCc-CCCCcCcccEEECcCCcCCcc
Confidence 7777763 555555666777777766543
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8.4e-29 Score=242.70 Aligned_cols=226 Identities=21% Similarity=0.155 Sum_probs=191.8
Q ss_pred CChhhhcCC----CCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcC
Q 038779 30 IPPELSKFG----GPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQ 104 (420)
Q Consensus 30 ~p~~~~~l~----~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 104 (420)
+|..+..+. +|+.|+|++|.+++..|..| .+++|++|+|++|.+++..| |..+++|++|+|++|.+++..+
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE--
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC--
Confidence 344554444 89999999999999888888 99999999999999987665 8899999999999999986543
Q ss_pred CCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCc
Q 038779 105 INTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGT 184 (420)
Q Consensus 105 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~ 184 (420)
.++|++|++++|.+++..+. .+++|+.|++++|.+++..|..+..
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~----------------------------- 142 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC----------------------------- 142 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-----------------------------
T ss_pred ---CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-----------------------------
Confidence 38999999999999976554 4688999999999998666655443
Q ss_pred ccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCcccc-CccCCCEEecCCccccc
Q 038779 185 YDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIG-ELQNVRSLNLSHNYLSG 263 (420)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 263 (420)
+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 143 ---------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 143 ---------------------------------------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp ---------------------------------------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ---------------------------------------CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 67899999999999998888876 79999999999999996
Q ss_pred ccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCcCCcCC
Q 038779 264 SIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCGS 336 (420)
Q Consensus 264 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 336 (420)
..+ ...+++|+.|+|++|.+++..| .+..+++|++|++++|.+++.++....++.+..+++.+|++.|+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 533 4468999999999999997555 488999999999999999987776777889999999999999854
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=3.1e-27 Score=215.97 Aligned_cols=204 Identities=23% Similarity=0.180 Sum_probs=125.4
Q ss_pred cCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEE
Q 038779 36 KFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLL 115 (420)
Q Consensus 36 ~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 115 (420)
++++++.+++++|.++.+ |..+ .+.+++|++++|++++..+..|..+++|++|+|++|.+++..+. +.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~i-p~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL-PPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSC-CSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcC-CCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence 344444444444444422 2222 13445555555555544445555555555555555555533221 4555666666
Q ss_pred cccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccC
Q 038779 116 LRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLS 195 (420)
Q Consensus 116 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (420)
+++|+++ .+|..+..+++|++|++++|++++..+..+..
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~---------------------------------------- 122 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG---------------------------------------- 122 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT----------------------------------------
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC----------------------------------------
Confidence 6666665 44555566666666666666665333333322
Q ss_pred CCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCC
Q 038779 196 NGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMT 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 275 (420)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|
T Consensus 123 ----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 123 ----------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174 (290)
T ss_dssp ----------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred ----------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence 4566666777776666666667777788888888888886666667788888
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccC
Q 038779 276 ESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLV 313 (420)
Q Consensus 276 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 313 (420)
+.|+|++|+++ .+|..+..++.|+.+++++|++.|.|
T Consensus 175 ~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 88888888887 56666777778889999999988877
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=5.6e-27 Score=212.34 Aligned_cols=203 Identities=24% Similarity=0.248 Sum_probs=181.3
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEec
Q 038779 14 PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDL 92 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 92 (420)
...+.++++++.++ .+|..+. ++++.|++++|++++..+..| .+++|++|++++|+++...+..|.++++|++|+|
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35789999999999 5676554 689999999999998888889 9999999999999999777778899999999999
Q ss_pred ccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCccccccccc
Q 038779 93 TDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELN 172 (420)
Q Consensus 93 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~ 172 (420)
++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------- 155 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK----------------- 155 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC-----------------
Confidence 999999888888999999999999999999888889999999999999999998443333322
Q ss_pred chhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCC
Q 038779 173 LEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVR 252 (420)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 252 (420)
+++|+.|++++|.+++..+..|..+++|+
T Consensus 156 ---------------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 156 ---------------------------------------------------LTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp ---------------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ---------------------------------------------------CcccceeEecCCcCcEeChhHhccCCCcC
Confidence 68899999999999988888899999999
Q ss_pred EEecCCcccccccchhhhccCCCCEEeCCCCcCcc
Q 038779 253 SLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRG 287 (420)
Q Consensus 253 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 287 (420)
+|++++|++++..+..|..+++|+.|++++|.+..
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 99999999997777789999999999999999864
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=5.4e-27 Score=229.22 Aligned_cols=301 Identities=20% Similarity=0.224 Sum_probs=195.1
Q ss_pred CCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEE
Q 038779 12 NFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTL 90 (420)
Q Consensus 12 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 90 (420)
.+++++.|+++++.++. +| .+..+++|++|++++|.+++..+ + .+++|++|++++|.+++..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 36789999999999984 55 48899999999999999997765 7 99999999999999996554 9999999999
Q ss_pred ecccCcccccCCcCCCCCCCCcEEEcccccccccCC-------------------ccccCCCCCcEEeCcCCccccCCC-
Q 038779 91 DLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIP-------------------NQLCELQKLGIMDLSHNRFNGSIP- 150 (420)
Q Consensus 91 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-------------------~~~~~l~~L~~L~L~~N~l~~~~p- 150 (420)
++++|.+++..+ +..+++|++|++++|.+++... ..+..+++|+.|++++|.+.+..+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l 195 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 195 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhh
Confidence 999999986543 8999999999999999885321 124455666666666666653211
Q ss_pred cccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCC--CCCcceEEEEeccCccccCCccccCCC
Q 038779 151 SCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGP--PGQHVEVEFVTKNRNELYNGSNLDYMS 228 (420)
Q Consensus 151 ~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~L~ 228 (420)
..+.+++.|.+.+|.+....... . ...+..+.+........+.. ......+...............+++|+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~~~--~-----l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 268 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITPLG--I-----LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 268 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGG--G-----CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred ccCCCCCEEEecCCccccccccc--c-----cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCC
Confidence 23445556666666655432210 0 01111111111100000000 000111111111111111133466777
Q ss_pred eEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCc
Q 038779 229 GLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNN 308 (420)
Q Consensus 229 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 308 (420)
.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +..+++|++|++++|+
T Consensus 269 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC
T ss_pred EEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCc
Confidence 77777777764433 6677777777777777775433 6777777777887777776554 6677778888888887
Q ss_pred CcccCCCCCcCCccCcccccCCcCCc
Q 038779 309 LSGLVPDKGQFAIFDESNYRGNIHLC 334 (420)
Q Consensus 309 l~~~~p~~~~~~~l~~~~~~~n~~~c 334 (420)
+++. +....++.++.+++.+|+...
T Consensus 343 l~~~-~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 343 VSDV-SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp CCCC-GGGTTCTTCCEEECCSSCCCB
T ss_pred cCCc-hhhccCCCCCEEeCCCCccCc
Confidence 7765 445566777777777776543
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=6.3e-27 Score=213.93 Aligned_cols=204 Identities=24% Similarity=0.216 Sum_probs=179.9
Q ss_pred CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEE
Q 038779 59 NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIM 138 (420)
Q Consensus 59 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 138 (420)
.+++++++++++|+++ .+|..+. +++++|+|++|.+++..+..|..+++|++|+|++|.+++..+. ..+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 6889999999999998 4555554 6899999999999988889999999999999999999965443 789999999
Q ss_pred eCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccc
Q 038779 139 DLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNEL 218 (420)
Q Consensus 139 ~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (420)
++++|++. .+|..+..
T Consensus 83 ~Ls~N~l~-~l~~~~~~--------------------------------------------------------------- 98 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQT--------------------------------------------------------------- 98 (290)
T ss_dssp ECCSSCCS-SCCCCTTT---------------------------------------------------------------
T ss_pred ECCCCcCC-cCchhhcc---------------------------------------------------------------
Confidence 99999997 55543322
Q ss_pred cCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCC
Q 038779 219 YNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNF 298 (420)
Q Consensus 219 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 298 (420)
+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++
T Consensus 99 -----l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 99 -----LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp -----CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred -----CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 678999999999999888889999999999999999999888888999999999999999999777778899999
Q ss_pred CCEEEcccCcCcccCCCCCcCCccCcccccCCcCCcCC
Q 038779 299 LSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNIHLCGS 336 (420)
Q Consensus 299 L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 336 (420)
|++|++++|+++...+.......++.+.+.+|||.|++
T Consensus 174 L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 99999999999977666667778999999999999954
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.3e-26 Score=223.26 Aligned_cols=143 Identities=24% Similarity=0.344 Sum_probs=118.6
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecc
Q 038779 14 PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLT 93 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 93 (420)
++|++|++++|++++ +| .|+++++|++|++++|++++ +|.. .++|++|++++|++++ +| .+.++++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 689999999999996 67 58999999999999999986 4443 3589999999999986 55 58899999999999
Q ss_pred cCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCccccccc
Q 038779 94 DNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIE 170 (420)
Q Consensus 94 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~ 170 (420)
+|.+++ +|... ++|++|++++|.++ .+| .+..+++|++|++++|++. .+|..+.+++.|.+.+|++..++
T Consensus 204 ~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 204 NNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp SSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCC
T ss_pred CCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccccccccCEEECCCCcccccC
Confidence 999985 44332 58999999999998 566 4889999999999999998 46667788889999888877643
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=1.3e-26 Score=210.07 Aligned_cols=221 Identities=20% Similarity=0.202 Sum_probs=188.5
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEec
Q 038779 14 PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDL 92 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 92 (420)
+.+..+++..+.++... ....+++|+.|++++|.+.. .+ .+ .+++|++|++++|++++. ..+..+++|++|+|
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 34556677777776543 35678999999999999874 33 36 899999999999999853 47889999999999
Q ss_pred ccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCccccccccc
Q 038779 93 TDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELN 172 (420)
Q Consensus 93 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~ 172 (420)
++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------- 155 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK----------------- 155 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-----------------
Confidence 999999888888999999999999999999888888999999999999999998544433332
Q ss_pred chhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCC
Q 038779 173 LEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVR 252 (420)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 252 (420)
+++|+.|++++|++++..+..++.+++|+
T Consensus 156 ---------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 156 ---------------------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp ---------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ---------------------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 67899999999999988888889999999
Q ss_pred EEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC
Q 038779 253 SLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 253 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 315 (420)
.|++++|++++..+..+..+++|+.|++++|.+.+ .++.|+.+++..|.++|.+|.
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBC
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccC
Confidence 99999999998888889999999999999998874 355789999999999999876
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.6e-25 Score=224.04 Aligned_cols=248 Identities=22% Similarity=0.200 Sum_probs=136.2
Q ss_pred CCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCC
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSS 85 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 85 (420)
||..+. ++|+.|++++|.++ .+|. .+++|++|+|++|+++++.+ .+++|++|++++|++++ +|. .++
T Consensus 55 lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~ 121 (622)
T 3g06_A 55 LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH-LPA---LPS 121 (622)
T ss_dssp CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC-CCC---CCT
T ss_pred cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC-CCC---CCC
Confidence 444443 45555555555555 2332 34455555555555543222 34555555555555553 222 334
Q ss_pred CCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcc
Q 038779 86 ELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKND 165 (420)
Q Consensus 86 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~ 165 (420)
+|+.|++++|++++ +|.. +++|++|++++|++++. |. .+++|+.|++++|.++ .+|..+.+++.|.+++|.
T Consensus 122 ~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 122 GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-SLPMLPSGLQELSVSDNQ 192 (622)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSC
T ss_pred CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC-CCcccCCCCcEEECCCCC
Confidence 55555555555543 2322 24555555555555532 22 2344555555555554 244444455555555555
Q ss_pred cccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccc
Q 038779 166 LYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEI 245 (420)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 245 (420)
+..++... ..+..+.+ ..+....+. ..+++|+.|++++|++++ +|
T Consensus 193 l~~l~~~~---------~~L~~L~L---------------------~~N~l~~l~-~~~~~L~~L~Ls~N~L~~-lp--- 237 (622)
T 3g06_A 193 LASLPTLP---------SELYKLWA---------------------YNNRLTSLP-ALPSGLKELIVSGNRLTS-LP--- 237 (622)
T ss_dssp CSCCCCCC---------TTCCEEEC---------------------CSSCCSSCC-CCCTTCCEEECCSSCCSC-CC---
T ss_pred CCCCCCcc---------chhhEEEC---------------------cCCcccccC-CCCCCCCEEEccCCccCc-CC---
Confidence 44322110 00001111 111111111 125778888888888885 44
Q ss_pred cCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC
Q 038779 246 GELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 246 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 315 (420)
..+++|+.|+|++|.++ .+|. .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++..|.
T Consensus 238 ~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 45678888899988888 4555 5678888999999888 6677888888889999999888877654
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=3.7e-26 Score=204.64 Aligned_cols=215 Identities=19% Similarity=0.206 Sum_probs=144.5
Q ss_pred CCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCc
Q 038779 62 SLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLS 141 (420)
Q Consensus 62 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 141 (420)
..++++++++.++ .+|..+. ++++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455566666665 3443333 456666666666666666666667777777777777766666666777777777777
Q ss_pred CCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCC
Q 038779 142 HNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNG 221 (420)
Q Consensus 142 ~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (420)
+|.+.+..+..+..
T Consensus 92 ~n~l~~~~~~~~~~------------------------------------------------------------------ 105 (251)
T 3m19_A 92 NNQLASLPLGVFDH------------------------------------------------------------------ 105 (251)
T ss_dssp TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcccccChhHhcc------------------------------------------------------------------
Confidence 77766333333222
Q ss_pred ccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCE
Q 038779 222 SNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSN 301 (420)
Q Consensus 222 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 301 (420)
+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++
T Consensus 106 --l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 106 --LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp --CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred --cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 566777777777777666666788888899999999888766667888999999999999999887778889999999
Q ss_pred EEcccCcCcccCCCCCcCCcc------CcccccCCcCCcCCCCCCCCCCcccc
Q 038779 302 FNVSYNNLSGLVPDKGQFAIF------DESNYRGNIHLCGSIINKSCNSAEEI 348 (420)
Q Consensus 302 L~L~~N~l~~~~p~~~~~~~l------~~~~~~~n~~~c~~~~~~~C~~~~~~ 348 (420)
|++++|+++|.+.....+..+ ...+..++. .|+.+....|..+...
T Consensus 184 L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~~~~ 235 (251)
T 3m19_A 184 ITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDGKVV 235 (251)
T ss_dssp EECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTSCBG
T ss_pred EEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCCcEE
Confidence 999999999885443222211 112233443 5677777888877443
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=1.1e-26 Score=210.60 Aligned_cols=204 Identities=20% Similarity=0.238 Sum_probs=167.2
Q ss_pred CCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEc
Q 038779 38 GGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLL 116 (420)
Q Consensus 38 ~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 116 (420)
.++..+++.++.+.... .. .+++|+.|++++|.++. . ..+..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 34556667677665432 23 78889999999998873 3 3588899999999999998853 47888999999999
Q ss_pred ccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCC
Q 038779 117 RGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSN 196 (420)
Q Consensus 117 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (420)
++|.+++..+..|..+++|++|++++|++.+..+..+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------------------------- 131 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK----------------------------------------- 131 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------------------------------------
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc-----------------------------------------
Confidence 999999887888899999999999999987544443332
Q ss_pred CCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCC
Q 038779 197 GAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTE 276 (420)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 276 (420)
+++|+.|++++|++++..+..++.+++|+.|++++|++++..+..|..+++|+
T Consensus 132 ---------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 132 ---------------------------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp ---------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ---------------------------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 67889999999999977777788899999999999999977777788999999
Q ss_pred EEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC
Q 038779 277 SLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 277 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 315 (420)
+|++++|++++..+..+..+++|++|++++|++.|.+|.
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 999999999988888888899999999999999988875
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=2.9e-26 Score=203.79 Aligned_cols=204 Identities=17% Similarity=0.231 Sum_probs=150.8
Q ss_pred ccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCc-ccccCChhhhCCCCCcEEeccc-CcccccCC
Q 038779 26 LEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNG-FNGPIPNALFRSSELLTLDLTD-NHFSGRIP 102 (420)
Q Consensus 26 l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p 102 (420)
++ .+|. +. ++|+.|++++|+++++.+..| ++++|++|++++|+ ++.+.+.+|.++++|++|++++ |.++++.+
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 55 4555 33 378888888888887777777 78888888888886 7766667788888888888887 88887777
Q ss_pred cCCCCCCCCcEEEcccccccccCCccccCCCCCc---EEeCcCC-ccccCCCcccccccccccCCcccccccccchhhcc
Q 038779 103 HQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLG---IMDLSHN-RFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLG 178 (420)
Q Consensus 103 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~ 178 (420)
..|.++++|++|++++|++++ +|. |..+++|+ .|++++| .+.+..+..+..
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~----------------------- 153 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG----------------------- 153 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT-----------------------
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc-----------------------
Confidence 778888888888888888875 454 77777777 8888888 776333333322
Q ss_pred CCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCC-eEEccCCccccCCCccccCccCCCEEecC
Q 038779 179 AGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMS-GLDLSCNELTGGIPVEIGELQNVRSLNLS 257 (420)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 257 (420)
+++|+ .|++++|+++...+..|.. ++|+.|+++
T Consensus 154 ---------------------------------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 154 ---------------------------------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp ---------------------------------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred ---------------------------------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 56777 8888888887444445554 788888888
Q ss_pred Ccc-cccccchhhhcc-CCCCEEeCCCCcCcccCCccccCCCCCCEEEcccC
Q 038779 258 HNY-LSGSIPESFFNL-KMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYN 307 (420)
Q Consensus 258 ~N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 307 (420)
+|+ +++..+..|.++ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 884 886667778888 8888888888888854433 5667888888775
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=4.5e-26 Score=202.53 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=43.3
Q ss_pred CCcEEECcCCcccccCChhhhCCCCCcEEecccCc-ccccCCcCCCCCCCCcEEEccc-ccccccCCccccCCCCCcEEe
Q 038779 62 SLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNH-FSGRIPHQINTLSNLRVLLLRG-NYLQGPIPNQLCELQKLGIMD 139 (420)
Q Consensus 62 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 139 (420)
+|++|++++|++++..+..|.++++|++|++++|+ ++++.+.+|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 4444444455555555555554 555544444455555555555
Q ss_pred CcCCccc
Q 038779 140 LSHNRFN 146 (420)
Q Consensus 140 L~~N~l~ 146 (420)
+++|+++
T Consensus 112 l~~n~l~ 118 (239)
T 2xwt_C 112 IFNTGLK 118 (239)
T ss_dssp EEEECCC
T ss_pred CCCCCCc
Confidence 5555544
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=5.3e-25 Score=220.34 Aligned_cols=234 Identities=24% Similarity=0.260 Sum_probs=182.0
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRS 84 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 84 (420)
.||. .+++|++|+|++|++++ +|. .+++|+.|++++|.++++.+ .+++|++|++++|+++. +|.. +
T Consensus 75 ~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~~---l 140 (622)
T 3g06_A 75 SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPVL---P 140 (622)
T ss_dssp CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSC-CCCC---C
T ss_pred CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CCCC---C
Confidence 4666 57899999999999994 665 67999999999999997544 57889999999999985 5543 4
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCc
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKN 164 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n 164 (420)
++|++|+|++|.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|..+.++..|.+.+|
T Consensus 141 ~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N 211 (622)
T 3g06_A 141 PGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNN 211 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS
T ss_pred CCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCCccchhhEEECcCC
Confidence 899999999999985 443 35789999999999995 45 45789999999999998 57777788899999888
Q ss_pred ccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCcc
Q 038779 165 DLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVE 244 (420)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 244 (420)
.+..++... ..+..+.+..+....+ . ..+++|+.|++++|+|+ .+|.
T Consensus 212 ~l~~l~~~~---------~~L~~L~Ls~N~L~~l---------------------p-~~l~~L~~L~Ls~N~L~-~lp~- 258 (622)
T 3g06_A 212 RLTSLPALP---------SGLKELIVSGNRLTSL---------------------P-VLPSELKELMVSGNRLT-SLPM- 258 (622)
T ss_dssp CCSSCCCCC---------TTCCEEECCSSCCSCC---------------------C-CCCTTCCEEECCSSCCS-CCCC-
T ss_pred cccccCCCC---------CCCCEEEccCCccCcC---------------------C-CCCCcCcEEECCCCCCC-cCCc-
Confidence 887654210 1111122211111111 1 23689999999999999 4554
Q ss_pred ccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCC
Q 038779 245 IGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELN 297 (420)
Q Consensus 245 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 297 (420)
.+++|+.|+|++|+++ .+|..+.++++|+.|+|++|.+++..|..+..++
T Consensus 259 --~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp --CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred --ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 5789999999999999 7888999999999999999999988887766544
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.93 E-value=1.5e-27 Score=225.33 Aligned_cols=247 Identities=19% Similarity=0.175 Sum_probs=161.0
Q ss_pred ceecCCccccCCCCCCEEEcccCcccccCC----hhhhcCC-CCCEEEccCCcCcccCCcCc-CC-----CCCcEEECcC
Q 038779 2 LSGHIPSWIGNFPVLAVMIMSKNRLEGNIP----PELSKFG-GPLILDVSENCLSGNMPSSL-NL-----SSLKHLYLRK 70 (420)
Q Consensus 2 ~~g~ip~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~i~~~~~~~~-~l-----~~L~~L~L~~ 70 (420)
++|.+|..+...++|++|+|++|.+++..+ +.|..++ +|+.|+|++|.+.+..+..+ .+ ++|++|++++
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 566677777666678888888888776555 6667777 78888888887776666655 43 7788888888
Q ss_pred CcccccCChhhh----CC-CCCcEEecccCcccccCCcC----CCC-CCCCcEEEcccccccccCC----ccccCCC-CC
Q 038779 71 NGFNGPIPNALF----RS-SELLTLDLTDNHFSGRIPHQ----INT-LSNLRVLLLRGNYLQGPIP----NQLCELQ-KL 135 (420)
Q Consensus 71 n~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~~~p~~----~~~-l~~L~~L~L~~N~l~~~~~----~~~~~l~-~L 135 (420)
|++++..+..+. .+ ++|++|+|++|.+++..+.. +.. .++|++|+|++|.++.... ..+..++ +|
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 887766555433 33 67888888888877554433 333 2578888888887774332 3334454 78
Q ss_pred cEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccC
Q 038779 136 GIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNR 215 (420)
Q Consensus 136 ~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (420)
++|+|++|++++..+..+...-
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l---------------------------------------------------------- 191 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFL---------------------------------------------------------- 191 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHH----------------------------------------------------------
T ss_pred cEeeecCCCCchhhHHHHHHHH----------------------------------------------------------
Confidence 8888888777654444332210
Q ss_pred ccccCCccc-cCCCeEEccCCccccC----CCccccC-ccCCCEEecCCcccccccc----hhhhccCCCCEEeCCCCcC
Q 038779 216 NELYNGSNL-DYMSGLDLSCNELTGG----IPVEIGE-LQNVRSLNLSHNYLSGSIP----ESFFNLKMTESLDLSYNRL 285 (420)
Q Consensus 216 ~~~~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l 285 (420)
... ++|+.|+|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|++++|.+
T Consensus 192 ------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 192 ------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp ------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred ------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence 002 4778888888887753 2333444 3478888888888775443 3345667788888888874
Q ss_pred cccC-------CccccCCCCCCEEEcccCcCccc
Q 038779 286 RGRV-------SPRLTELNFLSNFNVSYNNLSGL 312 (420)
Q Consensus 286 ~~~~-------~~~~~~l~~L~~L~L~~N~l~~~ 312 (420)
.+.. +..+..+++|+.||+++|++...
T Consensus 266 ~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 266 KNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4332 23456677778888888877655
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=8e-26 Score=208.95 Aligned_cols=223 Identities=22% Similarity=0.168 Sum_probs=112.9
Q ss_pred CCCEEEccCCcCcccCC----cCcCCCCCcEEECcCCcccccCChhh--hCCCCCcEEecccCcccccCC----cCCCCC
Q 038779 39 GPLILDVSENCLSGNMP----SSLNLSSLKHLYLRKNGFNGPIPNAL--FRSSELLTLDLTDNHFSGRIP----HQINTL 108 (420)
Q Consensus 39 ~L~~L~Ls~n~i~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l 108 (420)
.++.+.+.++.+....- ....+++|++|++++|++++..|..+ ..+++|++|+|++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45556665555542111 11134456666666666665555555 556666666666666654333 233455
Q ss_pred CCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccC--C-----CcccccccccccCCcccccccccchhhccCCC
Q 038779 109 SNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGS--I-----PSCLTSVSFWSQGKNDLYGIELNLEWDLGAGA 181 (420)
Q Consensus 109 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~-----p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~ 181 (420)
++|++|+|++|++++..+..|..+++|++|+|++|++.+. + +..+.+++.|.+++|++.........
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~------ 218 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA------ 218 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH------
Confidence 6666666666666655556666666666666666665421 0 01122222222222222111000000
Q ss_pred CCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCc---cCCCEEecCC
Q 038779 182 AGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGEL---QNVRSLNLSH 258 (420)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~ 258 (420)
....+++|++|+|++|++++..|..+..+ ++|++|+|++
T Consensus 219 --------------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 219 --------------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp --------------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred --------------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 00014556666666666665555555444 4666666666
Q ss_pred cccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCc
Q 038779 259 NYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLS 310 (420)
Q Consensus 259 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 310 (420)
|+++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|+++
T Consensus 261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 6666 4444442 5666666666666643 22 455566666666666654
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.93 E-value=1.5e-27 Score=227.49 Aligned_cols=241 Identities=19% Similarity=0.249 Sum_probs=178.6
Q ss_pred CCccccCCCCCCEEEcccCcccccCCh----hhhcCCCCCEEEccCCcC---cccCCcC-------c-CCCCCcEEECcC
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLEGNIPP----ELSKFGGPLILDVSENCL---SGNMPSS-------L-NLSSLKHLYLRK 70 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~n~i---~~~~~~~-------~-~l~~L~~L~L~~ 70 (420)
++..+..+++|++|+|++|.++...+. .+..+++|+.|+|++|.+ .+.+|.. + .+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 566677778888888888888765433 356788888888888643 3333432 2 578888888888
Q ss_pred Ccccc----cCChhhhCCCCCcEEecccCcccccCCcCCC----CC---------CCCcEEEccccccc-ccCC---ccc
Q 038779 71 NGFNG----PIPNALFRSSELLTLDLTDNHFSGRIPHQIN----TL---------SNLRVLLLRGNYLQ-GPIP---NQL 129 (420)
Q Consensus 71 n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~~---~~~ 129 (420)
|+++. .++..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++ ...+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 88876 3666777888888888888888644333333 33 78888888888886 2333 456
Q ss_pred cCCCCCcEEeCcCCccccC-----CCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCC
Q 038779 130 CELQKLGIMDLSHNRFNGS-----IPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQ 204 (420)
Q Consensus 130 ~~l~~L~~L~L~~N~l~~~-----~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (420)
..+++|+.|++++|++... .+..+.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-------------------------------------------------- 213 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-------------------------------------------------- 213 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGG--------------------------------------------------
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhh--------------------------------------------------
Confidence 6778888888888877521 111111
Q ss_pred cceEEEEeccCccccCCccccCCCeEEccCCccc----cCCCccccCccCCCEEecCCcccccc----cchhhhc--cCC
Q 038779 205 HVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELT----GGIPVEIGELQNVRSLNLSHNYLSGS----IPESFFN--LKM 274 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~--l~~ 274 (420)
.+++|+.|+|++|.++ ..+|..+..+++|+.|+|++|.+++. ++..+.. +++
T Consensus 214 ------------------~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 214 ------------------YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275 (386)
T ss_dssp ------------------GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred ------------------cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence 1678999999999996 56778889999999999999999865 5666644 899
Q ss_pred CCEEeCCCCcCcc----cCCccc-cCCCCCCEEEcccCcCcccCC
Q 038779 275 TESLDLSYNRLRG----RVSPRL-TELNFLSNFNVSYNNLSGLVP 314 (420)
Q Consensus 275 L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~~p 314 (420)
|++|+|++|.+++ .+|..+ ..+++|++|++++|++++..+
T Consensus 276 L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred eEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999999999997 477766 668999999999999987764
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=4.6e-26 Score=210.56 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=149.4
Q ss_pred CCCEEEcccCcccccCCh---hhhcCCCCCEEEccCCcCcccCCcCc---CCCCCcEEECcCCcccccCC----hhhhCC
Q 038779 15 VLAVMIMSKNRLEGNIPP---ELSKFGGPLILDVSENCLSGNMPSSL---NLSSLKHLYLRKNGFNGPIP----NALFRS 84 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~Ls~n~i~~~~~~~~---~l~~L~~L~L~~n~l~~~~~----~~~~~l 84 (420)
.++.+.+.++.++...-. .+..+++|+.|++++|.+.+..|..+ .+++|++|++++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 366677776665432111 11234567777777777777666654 56777777777777775444 334467
Q ss_pred CCCcEEecccCcccccCCcCCCCCCCCcEEEccccccccc---C-CccccCCCCCcEEeCcCCccccCCCc-------cc
Q 038779 85 SELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGP---I-PNQLCELQKLGIMDLSHNRFNGSIPS-------CL 153 (420)
Q Consensus 85 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~-~~~~~~l~~L~~L~L~~N~l~~~~p~-------~l 153 (420)
++|++|+|++|.+++..+..|+.+++|++|+|++|++.+. . +..+..+++|++|++++|+++ .++. .+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 7777777777777766667777777777777777776532 1 223356777777777777775 2221 23
Q ss_pred ccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEcc
Q 038779 154 TSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLS 233 (420)
Q Consensus 154 ~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 233 (420)
.+++.|++++|++.......... ...+++|++|+|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~--------------------------------------------~~~~~~L~~L~Ls 259 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPR--------------------------------------------CMWSSALNSLNLS 259 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSS--------------------------------------------CCCCTTCCCEECC
T ss_pred CCCCEEECCCCCCCccchhhHHh--------------------------------------------ccCcCcCCEEECC
Confidence 56667777777665442111000 0114789999999
Q ss_pred CCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcc
Q 038779 234 CNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRG 287 (420)
Q Consensus 234 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 287 (420)
+|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 260 ~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 260 FAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99999 6677664 8999999999999954 44 7889999999999999974
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=1e-24 Score=201.18 Aligned_cols=211 Identities=18% Similarity=0.256 Sum_probs=160.9
Q ss_pred CEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccC
Q 038779 17 AVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDN 95 (420)
Q Consensus 17 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 95 (420)
..+.+..+.+++..+ +..+++|+.|++++|.+... + .+ .+++|++|++++|++++..+ +..+++|++|+|++|
T Consensus 22 ~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 22 IKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN 95 (308)
T ss_dssp HHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred HHHHhCCCCcCceec--HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence 344555666654333 45677888888888888753 4 46 78888888888888885443 888888888888888
Q ss_pred cccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchh
Q 038779 96 HFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEW 175 (420)
Q Consensus 96 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~ 175 (420)
.+++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|.+.+..+ +..
T Consensus 96 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~-------------------- 149 (308)
T 1h6u_A 96 PLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG-------------------- 149 (308)
T ss_dssp CCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG--------------------
T ss_pred cCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC--------------------
Confidence 88754 3688888899999999888854 3 38888899999999888863322 211
Q ss_pred hccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEe
Q 038779 176 DLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLN 255 (420)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 255 (420)
+++|+.|++++|.+++..+ +..+++|+.|+
T Consensus 150 ------------------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 179 (308)
T 1h6u_A 150 ------------------------------------------------LTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179 (308)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ------------------------------------------------CCCccEEEccCCcCCCChh--hcCCCCCCEEE
Confidence 6788889999998885433 78888999999
Q ss_pred cCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccC
Q 038779 256 LSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLV 313 (420)
Q Consensus 256 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 313 (420)
+++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..
T Consensus 180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred CCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 99999885443 8888999999999999886553 788889999999999987643
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=1.7e-26 Score=218.22 Aligned_cols=254 Identities=19% Similarity=0.166 Sum_probs=198.6
Q ss_pred EEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCC----cCc-CCC-CCcEEECcCCcccccCChhhhCC-----CC
Q 038779 18 VMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMP----SSL-NLS-SLKHLYLRKNGFNGPIPNALFRS-----SE 86 (420)
Q Consensus 18 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~----~~~-~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 86 (420)
.+++++|.+++.+|..+...++|+.|+|++|.+++..+ ..+ .++ +|++|++++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999888888777789999999999998777 667 788 89999999999998878888775 99
Q ss_pred CcEEecccCcccccCCcC----CCCC-CCCcEEEcccccccccCCccc----cC-CCCCcEEeCcCCccccCCCcccccc
Q 038779 87 LLTLDLTDNHFSGRIPHQ----INTL-SNLRVLLLRGNYLQGPIPNQL----CE-LQKLGIMDLSHNRFNGSIPSCLTSV 156 (420)
Q Consensus 87 L~~L~L~~N~l~~~~p~~----~~~l-~~L~~L~L~~N~l~~~~~~~~----~~-l~~L~~L~L~~N~l~~~~p~~l~~l 156 (420)
|++|+|++|.+++..+.. +..+ ++|++|+|++|++++..+..+ .. .++|++|+|++|.+.+..+..+...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998766654 4444 899999999999997766554 34 3699999999999985444333210
Q ss_pred cccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCc
Q 038779 157 SFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNE 236 (420)
Q Consensus 157 ~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 236 (420)
- . ....+|++|+|++|+
T Consensus 162 l--~-------------------------------------------------------------~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 162 L--A-------------------------------------------------------------AIPANVNSLNLRGNN 178 (362)
T ss_dssp H--H-------------------------------------------------------------TSCTTCCEEECTTSC
T ss_pred H--h-------------------------------------------------------------cCCccccEeeecCCC
Confidence 0 0 002489999999999
Q ss_pred cccCCCccccC----c-cCCCEEecCCcccccc----cchhhhc-cCCCCEEeCCCCcCcccCC----ccccCCCCCCEE
Q 038779 237 LTGGIPVEIGE----L-QNVRSLNLSHNYLSGS----IPESFFN-LKMTESLDLSYNRLRGRVS----PRLTELNFLSNF 302 (420)
Q Consensus 237 l~~~~~~~~~~----l-~~L~~L~Ls~N~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L 302 (420)
+++..+..+.. . ++|++|+|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 99777755543 4 6999999999999863 5556666 4599999999999987655 345778999999
Q ss_pred EcccCcCcccCC--------CCCcCCccCcccccCCcCCc
Q 038779 303 NVSYNNLSGLVP--------DKGQFAIFDESNYRGNIHLC 334 (420)
Q Consensus 303 ~L~~N~l~~~~p--------~~~~~~~l~~~~~~~n~~~c 334 (420)
++++|.+....+ ....++.++.+++.+|+...
T Consensus 259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 999999544332 23466778888999997543
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=3.2e-24 Score=191.97 Aligned_cols=128 Identities=22% Similarity=0.255 Sum_probs=65.7
Q ss_pred CCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEeccc
Q 038779 16 LAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTD 94 (420)
Q Consensus 16 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 94 (420)
.++++++++.++ .+|..+. ++++.|+|++|.+.+..+..| .+++|++|++++|++++..+..|.++++|++|+|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 455566666555 3443332 355555555555555555555 555555555555555554444455555555555555
Q ss_pred CcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccc
Q 038779 95 NHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 95 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 5555444444555555555555555555444444444444444444444444
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=1.1e-24 Score=200.97 Aligned_cols=194 Identities=21% Similarity=0.310 Sum_probs=167.3
Q ss_pred ccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCc
Q 038779 10 IGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELL 88 (420)
Q Consensus 10 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 88 (420)
+.++++|++|++++|.++. +| .+..+++|+.|++++|.+++..+ + .+++|++|++++|++++. +.+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3457889999999999984 55 68899999999999999997665 7 999999999999999854 3799999999
Q ss_pred EEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCccccc
Q 038779 89 TLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYG 168 (420)
Q Consensus 89 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~ 168 (420)
+|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|+.|++++|.+.+ ++. +..
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~------------- 171 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LAN------------- 171 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTT-------------
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcC-------------
Confidence 999999999864 3 38999999999999999996543 8999999999999999874 222 221
Q ss_pred ccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCc
Q 038779 169 IELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGEL 248 (420)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 248 (420)
+++|+.|++++|.+++..+ +..+
T Consensus 172 -------------------------------------------------------l~~L~~L~l~~n~l~~~~~--l~~l 194 (308)
T 1h6u_A 172 -------------------------------------------------------LSKLTTLKADDNKISDISP--LASL 194 (308)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCCCCGG--GGGC
T ss_pred -------------------------------------------------------CCCCCEEECCCCccCcChh--hcCC
Confidence 6889999999999985544 8899
Q ss_pred cCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcc
Q 038779 249 QNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRG 287 (420)
Q Consensus 249 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 287 (420)
++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 195 ~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 999999999999996543 8999999999999999984
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=3.3e-27 Score=230.54 Aligned_cols=309 Identities=14% Similarity=0.036 Sum_probs=197.4
Q ss_pred ccCCCCCCEEEcccCccccc----CChhhhcCCCCCEEEccCCcCcccCCcCc--CCC----CCcEEECcCCcccc----
Q 038779 10 IGNFPVLAVMIMSKNRLEGN----IPPELSKFGGPLILDVSENCLSGNMPSSL--NLS----SLKHLYLRKNGFNG---- 75 (420)
Q Consensus 10 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~l~----~L~~L~L~~n~l~~---- 75 (420)
+..+++|++|++++|.+++. ++..+..+++|++|++++|.+....+..+ .++ +|++|++++|+++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 56678888999998888743 46667778889999999988876555444 455 68899999988874
Q ss_pred cCChhhhCCCCCcEEecccCcccccCCcC-----CCCCCCCcEEEcccccccccC----CccccCCCCCcEEeCcCCccc
Q 038779 76 PIPNALFRSSELLTLDLTDNHFSGRIPHQ-----INTLSNLRVLLLRGNYLQGPI----PNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 76 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-----~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~ 146 (420)
.++..+..+++|++|+|++|.+++..+.. +...++|++|++++|++++.. +..+..+++|++|++++|.+.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 45778888888999999988887543332 233567888999888887643 556677788999999888876
Q ss_pred cCCCcc--------cccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccc
Q 038779 147 GSIPSC--------LTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNEL 218 (420)
Q Consensus 147 ~~~p~~--------l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (420)
+..+.. ..+++.|.+.+|.+............. ....+..+.+..+.-.+. .......
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~-------------~~~~l~~ 249 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDV-------------GMAELCP 249 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHH-------------HHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChH-------------HHHHHHH
Confidence 433322 237778888887766532111110000 000011111110000000 0000000
Q ss_pred cCCccccCCCeEEccCCccccC----CCccccCccCCCEEecCCcccccccchhhhcc-----CCCCEEeCCCCcCccc-
Q 038779 219 YNGSNLDYMSGLDLSCNELTGG----IPVEIGELQNVRSLNLSHNYLSGSIPESFFNL-----KMTESLDLSYNRLRGR- 288 (420)
Q Consensus 219 ~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~- 288 (420)
.....+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+... ++|++|++++|.+++.
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHH
Confidence 0011257788888888888753 45666678888888888888876555444433 6888888888888765
Q ss_pred ---CCccccCCCCCCEEEcccCcCcccCCC-C-----CcCCccCcccccCCcC
Q 038779 289 ---VSPRLTELNFLSNFNVSYNNLSGLVPD-K-----GQFAIFDESNYRGNIH 332 (420)
Q Consensus 289 ---~~~~~~~l~~L~~L~L~~N~l~~~~p~-~-----~~~~~l~~~~~~~n~~ 332 (420)
++..+..+++|++|++++|+++...+. . ...+.++.+++.+|..
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 355566778888888888888765322 1 1145777788887753
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.91 E-value=4.9e-24 Score=200.33 Aligned_cols=243 Identities=16% Similarity=0.122 Sum_probs=154.5
Q ss_pred CEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccC-ChhhhCCCCCcE-Eecc
Q 038779 17 AVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPI-PNALFRSSELLT-LDLT 93 (420)
Q Consensus 17 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~L~ 93 (420)
++++.++++++ .+|..+ .++++.|+|++|+|+.+.+++| ++++|++|+|++|++.+.+ +.+|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56778888888 566655 2578888888888887777778 8888888888888875543 456777777654 5666
Q ss_pred cCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcC-CccccCCCcccccccccccCCccccccccc
Q 038779 94 DNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSH-NRFNGSIPSCLTSVSFWSQGKNDLYGIELN 172 (420)
Q Consensus 94 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~ 172 (420)
.|+++.+.|++|..+++|++|++++|+++...+..+....++..|++.+ +.+....+..+..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~---------------- 152 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL---------------- 152 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS----------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc----------------
Confidence 7888877788888888888888888888876666677777777887765 34442222222111
Q ss_pred chhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCC
Q 038779 173 LEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVR 252 (420)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 252 (420)
...++.|+|++|+|+...+..| ...+|+
T Consensus 153 ---------------------------------------------------~~~l~~L~L~~N~i~~i~~~~f-~~~~L~ 180 (350)
T 4ay9_X 153 ---------------------------------------------------SFESVILWLNKNGIQEIHNSAF-NGTQLD 180 (350)
T ss_dssp ---------------------------------------------------BSSCEEEECCSSCCCEECTTSS-TTEEEE
T ss_pred ---------------------------------------------------chhhhhhccccccccCCChhhc-cccchh
Confidence 2345667777777764444333 345666
Q ss_pred EEecCC-cccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCccCcccccCCc
Q 038779 253 SLNLSH-NYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIFDESNYRGNI 331 (420)
Q Consensus 253 ~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~~~~~~n~ 331 (420)
.|++++ |.++...++.|.++++|++||+++|+|+...+..+. .|+.|.+.++.--...|....++.++.+++. ++
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~-~~ 256 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPTLEKLVALMEASLT-YP 256 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCCTTTCCSCCEEECS-CH
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCCchhCcChhhCcCC-CC
Confidence 777654 455533344567777777777777777644443333 3444444443322334445556666665553 44
Q ss_pred CCc
Q 038779 332 HLC 334 (420)
Q Consensus 332 ~~c 334 (420)
+.|
T Consensus 257 ~~c 259 (350)
T 4ay9_X 257 SHC 259 (350)
T ss_dssp HHH
T ss_pred ccc
Confidence 444
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.91 E-value=2.9e-24 Score=201.85 Aligned_cols=227 Identities=16% Similarity=0.099 Sum_probs=176.7
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccC-CcCc-CCCCCcE-EECcCCcccccCChhh
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNM-PSSL-NLSSLKH-LYLRKNGFNGPIPNAL 81 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~-~~~~-~l~~L~~-L~L~~n~l~~~~~~~~ 81 (420)
+||..+. +++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+ +++| +++++++ +.+++|+++.+.|++|
T Consensus 23 ~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 23 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 5787773 68999999999999777778999999999999999987655 4677 8988775 6777899998889999
Q ss_pred hCCCCCcEEecccCcccccCCcCCCCCCCCcEEEccc-ccccccCCccccCCC-CCcEEeCcCCccccCCCccccccccc
Q 038779 82 FRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRG-NYLQGPIPNQLCELQ-KLGIMDLSHNRFNGSIPSCLTSVSFW 159 (420)
Q Consensus 82 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~l 159 (420)
.++++|++|++++|+++...+..+....++..|++.+ ++++...+..|..+. .++.|++++|+++ .+|.....
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~---- 175 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN---- 175 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSST----
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcc----
Confidence 9999999999999999988777888888899999865 678877777888875 6899999999997 34432211
Q ss_pred ccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccC-Cccc
Q 038779 160 SQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSC-NELT 238 (420)
Q Consensus 160 ~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~ 238 (420)
..+|+.|++++ |.++
T Consensus 176 ----------------------------------------------------------------~~~L~~l~l~~~n~l~ 191 (350)
T 4ay9_X 176 ----------------------------------------------------------------GTQLDELNLSDNNNLE 191 (350)
T ss_dssp ----------------------------------------------------------------TEEEEEEECTTCTTCC
T ss_pred ----------------------------------------------------------------ccchhHHhhccCCccc
Confidence 34577788874 6676
Q ss_pred cCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCC-cCcccCCccccCCCCCCEEEcccC
Q 038779 239 GGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYN-RLRGRVSPRLTELNFLSNFNVSYN 307 (420)
Q Consensus 239 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 307 (420)
...++.|+++++|++|+|++|+|+...+..|. +|+.|.+.++ .++ .+| .+..+++|+.++++++
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~-~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCC-CCC-CTTTCCSCCEEECSCH
T ss_pred CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcC-cCC-CchhCcChhhCcCCCC
Confidence 55556788888999999999988854444444 4555554443 344 455 3778888888888754
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=9.6e-27 Score=227.21 Aligned_cols=274 Identities=14% Similarity=0.087 Sum_probs=175.0
Q ss_pred CCCEEEcccCcccc----cCChhhhcCCCCCEEEccCCcCcccCCcCc------CCCCCcEEECcCCcccccC----Chh
Q 038779 15 VLAVMIMSKNRLEG----NIPPELSKFGGPLILDVSENCLSGNMPSSL------NLSSLKHLYLRKNGFNGPI----PNA 80 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~------~l~~L~~L~L~~n~l~~~~----~~~ 80 (420)
+|++|+|++|.++. .++..+..+++|+.|++++|.+.+..+..+ ..++|++|++++|++++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 69999999999984 458888999999999999999876554433 3567999999999998643 566
Q ss_pred hhCCCCCcEEecccCcccccCCcCCC-----CCCCCcEEEccccccccc----CCccccCCCCCcEEeCcCCccccCC--
Q 038779 81 LFRSSELLTLDLTDNHFSGRIPHQIN-----TLSNLRVLLLRGNYLQGP----IPNQLCELQKLGIMDLSHNRFNGSI-- 149 (420)
Q Consensus 81 ~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-- 149 (420)
+..+++|++|++++|.++...+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 77789999999999998755444433 356899999999999864 4677788899999999999886431
Q ss_pred ---C---cccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCcc
Q 038779 150 ---P---SCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSN 223 (420)
Q Consensus 150 ---p---~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (420)
+ ....+++.|.+.+|.+............ ..
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-------------------------------------------~~ 282 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL-------------------------------------------RA 282 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH-------------------------------------------HH
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH-------------------------------------------hh
Confidence 1 1245777888888776553211111000 11
Q ss_pred ccCCCeEEccCCccccCCCccccC-----ccCCCEEecCCcccccc----cchhhhccCCCCEEeCCCCcCcccCCcccc
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGE-----LQNVRSLNLSHNYLSGS----IPESFFNLKMTESLDLSYNRLRGRVSPRLT 294 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 294 (420)
+++|+.|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+.
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 345566666666554333322222 14566666666655543 344445556666666666655544333332
Q ss_pred C-----CCCCCEEEcccCcCcc----cCCC-CCcCCccCcccccCCc
Q 038779 295 E-----LNFLSNFNVSYNNLSG----LVPD-KGQFAIFDESNYRGNI 331 (420)
Q Consensus 295 ~-----l~~L~~L~L~~N~l~~----~~p~-~~~~~~l~~~~~~~n~ 331 (420)
. .+.|++|++++|+++. .+|. ....+.++.+++.+|+
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 1 4456666666665553 2222 2234455555555554
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=4.6e-25 Score=206.23 Aligned_cols=222 Identities=19% Similarity=0.247 Sum_probs=171.2
Q ss_pred CCCEEEcccCcccccCChhhhcC--CCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCccccc-CChhhhCCCCCcEEe
Q 038779 15 VLAVMIMSKNRLEGNIPPELSKF--GGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGP-IPNALFRSSELLTLD 91 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 91 (420)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+..+.+++|++|++++|.+++. .+..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4789999999877 5667777 899999999999998877766999999999999999865 788889999999999
Q ss_pred cccCcccccCCcCCCCCCCCcEEEcccc-ccccc-CCccccCCCCCcEEeCcCC-ccccC-CCcccccccccccCCcccc
Q 038779 92 LTDNHFSGRIPHQINTLSNLRVLLLRGN-YLQGP-IPNQLCELQKLGIMDLSHN-RFNGS-IPSCLTSVSFWSQGKNDLY 167 (420)
Q Consensus 92 L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~l~~~~n~l~ 167 (420)
|++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~------------ 192 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH------------ 192 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH------------
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh------------
Confidence 9999998888888999999999999999 67753 5667889999999999999 77642 2332221
Q ss_pred cccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCcccc-CCCeEEccCC--ccc-cCCCc
Q 038779 168 GIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLD-YMSGLDLSCN--ELT-GGIPV 243 (420)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~ 243 (420)
++ +|++|++++| .++ +.++.
T Consensus 193 --------------------------------------------------------l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 193 --------------------------------------------------------VSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp --------------------------------------------------------SCTTCCEEECCSCGGGSCHHHHHH
T ss_pred --------------------------------------------------------cccCCCEEEeCCCcccCCHHHHHH
Confidence 45 6777777777 344 34455
Q ss_pred cccCccCCCEEecCCcc-cccccchhhhccCCCCEEeCCCCc-CcccCCccccCCCCCCEEEcccC
Q 038779 244 EIGELQNVRSLNLSHNY-LSGSIPESFFNLKMTESLDLSYNR-LRGRVSPRLTELNFLSNFNVSYN 307 (420)
Q Consensus 244 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 307 (420)
.+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66667777777777777 665666677777777777777774 32222224666777777777777
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=7.6e-26 Score=211.56 Aligned_cols=229 Identities=17% Similarity=0.193 Sum_probs=187.0
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCccc-CCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEe
Q 038779 14 PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGN-MPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLD 91 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~-~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 91 (420)
+.++.|++++|.+++..+. +..+++|+.|++++|.+.+. .+..+ .+++|++|++++|++++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 7899999999999987665 55799999999999999865 67777 899999999999999988888999999999999
Q ss_pred cccC-ccccc-CCcCCCCCCCCcEEEcccc-ccccc-CCccccCCC-CCcEEeCcCCc--cc-cCCCcccccccccccCC
Q 038779 92 LTDN-HFSGR-IPHQINTLSNLRVLLLRGN-YLQGP-IPNQLCELQ-KLGIMDLSHNR--FN-GSIPSCLTSVSFWSQGK 163 (420)
Q Consensus 92 L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~L~~N~--l~-~~~p~~l~~l~~l~~~~ 163 (420)
|++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.+|..+..
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-------- 220 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-------- 220 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--------
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--------
Confidence 9999 67753 5666888999999999999 88864 567788999 99999999995 43 222322221
Q ss_pred cccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCc-cccCCC
Q 038779 164 NDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNE-LTGGIP 242 (420)
Q Consensus 164 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 242 (420)
+++|+.|++++|. +++..+
T Consensus 221 ------------------------------------------------------------~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 221 ------------------------------------------------------------CPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp ------------------------------------------------------------CTTCSEEECTTCTTCCGGGG
T ss_pred ------------------------------------------------------------CCCCCEEeCCCCCcCCHHHH
Confidence 6789999999999 777778
Q ss_pred ccccCccCCCEEecCCcc-cccccchhhhccCCCCEEeCCCCcCcccCCccccCC-CCCCEEEcccCcCcccCCC
Q 038779 243 VEIGELQNVRSLNLSHNY-LSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTEL-NFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 243 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~ 315 (420)
..+..+++|++|++++|. +.......+.++++|+.|++++| ++.. .+..+ ..+..|++++|.+++..|.
T Consensus 241 ~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 889999999999999995 33333336888999999999999 4432 33333 2366778999999988775
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=6.4e-26 Score=216.24 Aligned_cols=254 Identities=17% Similarity=0.171 Sum_probs=196.0
Q ss_pred CCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCC----cCc-CCCCCcEEECcCCc---ccccCChhh------
Q 038779 16 LAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMP----SSL-NLSSLKHLYLRKNG---FNGPIPNAL------ 81 (420)
Q Consensus 16 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~----~~~-~l~~L~~L~L~~n~---l~~~~~~~~------ 81 (420)
|+...++...+. .++..+..+++|+.|+|++|.+....+ ..+ .+++|++|+|++|. +++..|..+
T Consensus 11 L~~~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 11 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CEESSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred cccCCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 333344444444 577888899999999999999987644 346 79999999999964 444556555
Q ss_pred -hCCCCCcEEecccCcccc----cCCcCCCCCCCCcEEEcccccccccCCcccc----CC---------CCCcEEeCcCC
Q 038779 82 -FRSSELLTLDLTDNHFSG----RIPHQINTLSNLRVLLLRGNYLQGPIPNQLC----EL---------QKLGIMDLSHN 143 (420)
Q Consensus 82 -~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~l---------~~L~~L~L~~N 143 (420)
..+++|++|+|++|.++. .+|..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 688999999999999986 4677888899999999999999754444433 33 89999999999
Q ss_pred cccc-CCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCc
Q 038779 144 RFNG-SIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGS 222 (420)
Q Consensus 144 ~l~~-~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (420)
++.. .++.....+ .
T Consensus 170 ~l~~~~~~~l~~~l-----------------------------------------------------------------~ 184 (386)
T 2ca6_A 170 RLENGSMKEWAKTF-----------------------------------------------------------------Q 184 (386)
T ss_dssp CCTGGGHHHHHHHH-----------------------------------------------------------------H
T ss_pred CCCcHHHHHHHHHH-----------------------------------------------------------------H
Confidence 9862 222110000 1
Q ss_pred cccCCCeEEccCCcccc-----CCCccccCccCCCEEecCCcccc----cccchhhhccCCCCEEeCCCCcCccc----C
Q 038779 223 NLDYMSGLDLSCNELTG-----GIPVEIGELQNVRSLNLSHNYLS----GSIPESFFNLKMTESLDLSYNRLRGR----V 289 (420)
Q Consensus 223 ~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~ 289 (420)
.+++|+.|++++|+++. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 16789999999999973 34447889999999999999996 57888899999999999999999866 4
Q ss_pred Ccccc--CCCCCCEEEcccCcCcc----cCCC-C-CcCCccCcccccCCcCCcC
Q 038779 290 SPRLT--ELNFLSNFNVSYNNLSG----LVPD-K-GQFAIFDESNYRGNIHLCG 335 (420)
Q Consensus 290 ~~~~~--~l~~L~~L~L~~N~l~~----~~p~-~-~~~~~l~~~~~~~n~~~c~ 335 (420)
+..+. .+++|++|++++|+++. .+|. . ..++.++.+++.+|+....
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 56663 38999999999999998 3444 2 3468899999999987653
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=7.9e-23 Score=177.53 Aligned_cols=128 Identities=21% Similarity=0.258 Sum_probs=87.2
Q ss_pred CEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccC
Q 038779 17 AVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDN 95 (420)
Q Consensus 17 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 95 (420)
+.++.+++.++ .+|..+ .++|+.|++++|++++..+..| .+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46677777766 344333 3467777777777776666666 7777777777777777665556667777777777777
Q ss_pred cccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcccc
Q 038779 96 HFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNG 147 (420)
Q Consensus 96 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 147 (420)
.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 7776655566777777777777777776655666677777777777776653
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=9.3e-23 Score=177.08 Aligned_cols=140 Identities=19% Similarity=0.171 Sum_probs=127.3
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
++|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..| .+++|++|++++|++++..+..|..
T Consensus 21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 21 SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 356554 4689999999999998777788999999999999999998888888 9999999999999999877778899
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccc
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+.
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 999999999999999888888999999999999999999887778999999999999999775
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=7.3e-23 Score=179.20 Aligned_cols=91 Identities=19% Similarity=0.148 Sum_probs=72.8
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
+++|++|+|++|.++...+..|.++++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 45566666666666655555567788888888888888877788888888899999999998887777888899999999
Q ss_pred cccCcCcccCC
Q 038779 304 VSYNNLSGLVP 314 (420)
Q Consensus 304 L~~N~l~~~~p 314 (420)
+++|++.|.|.
T Consensus 159 L~~N~~~c~c~ 169 (220)
T 2v9t_B 159 LAQNPFICDCH 169 (220)
T ss_dssp CCSSCEECSGG
T ss_pred eCCCCcCCCCc
Confidence 99999998874
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.88 E-value=1.3e-22 Score=191.48 Aligned_cols=90 Identities=23% Similarity=0.141 Sum_probs=51.6
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhh---hccCCCCEEeCCCCcCcccCCccccCCCC--
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESF---FNLKMTESLDLSYNRLRGRVSPRLTELNF-- 298 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-- 298 (420)
+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++..+..| ..+++|+.|+|++|+|+...+..+..++.
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 3445555555555555555555566666666666666664333333 44666666666666666544455555554
Q ss_pred CCEEEcccCcCcccC
Q 038779 299 LSNFNVSYNNLSGLV 313 (420)
Q Consensus 299 L~~L~L~~N~l~~~~ 313 (420)
++.|++++|++.|.|
T Consensus 191 l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 191 KNGLYLHNNPLECDC 205 (361)
T ss_dssp HTTEECCSSCEECCH
T ss_pred cceEEecCCCccCCc
Confidence 366777777777665
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=177.22 Aligned_cols=157 Identities=19% Similarity=0.196 Sum_probs=117.2
Q ss_pred cEEecccCcccccCCcCCCCCCCCcEEEcccccccccCC-ccccCCCCCcEEeCcCCccccCCCcccccccccccCCccc
Q 038779 88 LTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIP-NQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDL 166 (420)
Q Consensus 88 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l 166 (420)
+.+++++|.++. +|..+. +.+++|+|++|++++..+ ..|..+++|+.|+|++|++++..+..+..
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 356666666653 344332 345667777777765533 44667777777777777776443333332
Q ss_pred ccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCcccc
Q 038779 167 YGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIG 246 (420)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 246 (420)
+++|++|+|++|.+++..+..|.
T Consensus 80 ---------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 80 ---------------------------------------------------------ASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGT
T ss_pred ---------------------------------------------------------CCCCCEEECCCCccCccCHhHhc
Confidence 56677777888887777777788
Q ss_pred CccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC
Q 038779 247 ELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 247 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 315 (420)
.+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++.|.|+-
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 888999999999999888888899999999999999999988888999999999999999999998853
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.88 E-value=4.4e-22 Score=175.38 Aligned_cols=186 Identities=20% Similarity=0.221 Sum_probs=131.3
Q ss_pred CcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCccc
Q 038779 87 LLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDL 166 (420)
Q Consensus 87 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l 166 (420)
-+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++....+..+..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 345666666665 4444332 66777777777777666677777777777777777765322222222
Q ss_pred ccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCcccc
Q 038779 167 YGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIG 246 (420)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 246 (420)
+++|+.|+|++|++++..+..|.
T Consensus 87 ---------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 87 ---------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTT
T ss_pred ---------------------------------------------------------CCCcCEEECCCCcCCccChhHhC
Confidence 56777788888888766667778
Q ss_pred CccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCCCCcCCcc----
Q 038779 247 ELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPDKGQFAIF---- 322 (420)
Q Consensus 247 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l---- 322 (420)
.+++|+.|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|++.|.|+....+..+
T Consensus 110 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~ 188 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH 188 (229)
T ss_dssp TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence 8899999999999998 77888899999999999999999777778999999999999999999998743332222
Q ss_pred --CcccccCCcCCcCCCCCCCCCCcc
Q 038779 323 --DESNYRGNIHLCGSIINKSCNSAE 346 (420)
Q Consensus 323 --~~~~~~~n~~~c~~~~~~~C~~~~ 346 (420)
....+.|++ +..+....|..+.
T Consensus 189 ~~~~~~~~g~~--v~~~~~~~C~~~~ 212 (229)
T 3e6j_A 189 TSIAMRWDGKA--VNDPDSAKCAGTN 212 (229)
T ss_dssp GGGEEEESSSE--EECTTCSBBTTTC
T ss_pred ccccccccCcc--cCCCCcCccCCCC
Confidence 112344554 3445556787663
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=4.5e-22 Score=196.85 Aligned_cols=94 Identities=23% Similarity=0.327 Sum_probs=54.6
Q ss_pred CCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEccc
Q 038779 39 GPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRG 118 (420)
Q Consensus 39 ~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 118 (420)
+++.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|+|++|.|++ +|. +.+ +|++|+|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 66666666666665 33333 245666666666666 344 234566666666666664 444 443 666666666
Q ss_pred ccccccCCccccCCCCCcEEeCcCCccc
Q 038779 119 NYLQGPIPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 119 N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
|++++ +|. .+++|+.|++++|.++
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CcCCC-CCC---cCccccEEeCCCCccC
Confidence 66664 333 4566666666666665
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=6.9e-22 Score=195.48 Aligned_cols=187 Identities=23% Similarity=0.357 Sum_probs=150.3
Q ss_pred CCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEeccc
Q 038779 15 VLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTD 94 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 94 (420)
+|+.|++++|.+++ +|..+ .++|+.|+|++|+++. +|. .+++|++|++++|++++ +|. +.+ +|++|+|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip~--~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LPE--LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-ccc--ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 89999999999996 67655 3799999999999994 552 36899999999999996 666 655 999999999
Q ss_pred CcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccch
Q 038779 95 NHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLE 174 (420)
Q Consensus 95 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~ 174 (420)
|.|++ +|. .+++|+.|+|++|++++ +|. .+++|+.|+|++|.+++ +|. +
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l--------------------- 178 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L--------------------- 178 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C---------------------
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h---------------------
Confidence 99996 565 68999999999999996 555 67899999999999984 554 2
Q ss_pred hhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCC---
Q 038779 175 WDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNV--- 251 (420)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--- 251 (420)
.++|+.|+|++|+|+ .+|. |.. +|
T Consensus 179 -------------------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~ 205 (571)
T 3cvr_A 179 -------------------------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHS 205 (571)
T ss_dssp -------------------------------------------------CTTCCEEECCSSCCS-SCCC-CC--------
T ss_pred -------------------------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcc
Confidence 246788888888888 5555 544 66
Q ss_pred ----CEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCC
Q 038779 252 ----RSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTEL 296 (420)
Q Consensus 252 ----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 296 (420)
+.|+|++|+|+ .+|..+..+++|+.|+|++|.+++..|..+..+
T Consensus 206 ~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp --CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred cccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 88888888888 577777778888888888888887777766554
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=2.2e-21 Score=169.73 Aligned_cols=140 Identities=24% Similarity=0.250 Sum_probs=118.5
Q ss_pred cCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.||..+. ++|+.|++++|+|+++.+..|..+++|+.|+|++|++++..|..| ++++|++|+|++|+++...+..|.+
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC
Confidence 4666554 678888888888887777788888888899998888888888888 8888888899888888776677888
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccc
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
+++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++.
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888888999888888888888888888888888888888777778888888888888888876
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=1.2e-21 Score=178.98 Aligned_cols=82 Identities=23% Similarity=0.284 Sum_probs=50.3
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
+++|+.|++++|++++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|++++. + .+..+++|+.|+
T Consensus 133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~ 206 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLE 206 (291)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEE
T ss_pred CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEE
Confidence 45566666666666543 345666666666666666664333 66666666666666666643 2 366666677777
Q ss_pred cccCcCcc
Q 038779 304 VSYNNLSG 311 (420)
Q Consensus 304 L~~N~l~~ 311 (420)
+++|+++.
T Consensus 207 l~~n~i~~ 214 (291)
T 1h6t_A 207 LFSQECLN 214 (291)
T ss_dssp EEEEEEEC
T ss_pred CcCCcccC
Confidence 77776654
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=3.7e-21 Score=181.40 Aligned_cols=128 Identities=29% Similarity=0.324 Sum_probs=103.9
Q ss_pred CEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc--CCCCCcEEECcCCcccccCChhhhCCCCCcEEeccc
Q 038779 17 AVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL--NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTD 94 (420)
Q Consensus 17 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 94 (420)
+.++++++.++ .+|..+. +.++.|+|++|+|++..+..| ++++|++|+|++|++++..+.+|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888888 4665543 468888888888888777777 788888888888888877777888888888888888
Q ss_pred CcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcccc
Q 038779 95 NHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNG 147 (420)
Q Consensus 95 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 147 (420)
|+|+++.+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 88887777778888888888888888887778888888888888888888873
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=8e-21 Score=173.52 Aligned_cols=190 Identities=20% Similarity=0.266 Sum_probs=157.3
Q ss_pred CCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecc
Q 038779 15 VLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLT 93 (420)
Q Consensus 15 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 93 (420)
.+..+.+..+.+++..+ +..+++|+.|++++|.+... +. + .+++|++|++++|++++..+ +..+++|++|+|+
T Consensus 25 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-TT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-hh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 34455667777765443 46788999999999999865 33 6 89999999999999996544 8999999999999
Q ss_pred cCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccc
Q 038779 94 DNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNL 173 (420)
Q Consensus 94 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~ 173 (420)
+|.+++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|.+.+. ..+..
T Consensus 99 ~n~l~~~-~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~------------------ 154 (291)
T 1h6t_A 99 ENKVKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR------------------ 154 (291)
T ss_dssp SSCCCCG-G-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG------------------
T ss_pred CCcCCCC-h-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc------------------
Confidence 9999853 3 489999999999999999864 5789999999999999998743 22221
Q ss_pred hhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCE
Q 038779 174 EWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRS 253 (420)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 253 (420)
+++|+.|++++|.+++..+ +..+++|+.
T Consensus 155 --------------------------------------------------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 155 --------------------------------------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp --------------------------------------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred --------------------------------------------------CCCCCEEEccCCccccchh--hcCCCccCE
Confidence 6889999999999996554 889999999
Q ss_pred EecCCcccccccchhhhccCCCCEEeCCCCcCccc
Q 038779 254 LNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGR 288 (420)
Q Consensus 254 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 288 (420)
|++++|.+++ ++ .+..+++|+.|++++|+++..
T Consensus 183 L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 183 LYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp EECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 9999999995 44 489999999999999999853
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=8.3e-21 Score=166.07 Aligned_cols=142 Identities=20% Similarity=0.210 Sum_probs=119.8
Q ss_pred cCCccccCCCCCCEEEcccCcccccCC-hhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhh
Q 038779 5 HIPSWIGNFPVLAVMIMSKNRLEGNIP-PELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALF 82 (420)
Q Consensus 5 ~ip~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~ 82 (420)
.||..+. +.+++|+|++|++++..+ ..|..+++|+.|+|++|+++++.+..| ++++|++|+|++|++++..+..|.
T Consensus 25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT
T ss_pred cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhc
Confidence 4677664 356889999999887644 457888899999999999988888888 888999999999999887788888
Q ss_pred CCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccC
Q 038779 83 RSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGS 148 (420)
Q Consensus 83 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 148 (420)
++++|++|+|++|+|+++.|..|.++++|++|+|++|++++..|..|..+++|+.|++++|.+...
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 889999999999999888888888899999999999999888888888899999999999888743
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=5.7e-21 Score=190.89 Aligned_cols=192 Identities=20% Similarity=0.257 Sum_probs=139.7
Q ss_pred CCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEec
Q 038779 14 PVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDL 92 (420)
Q Consensus 14 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 92 (420)
..+..+.++.+.+++..+ +..+++|+.|++++|.+... + .+ .+++|+.|+|++|++++..+ +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 345556667777765444 45778888888888888754 3 36 78888888888888875544 778888888888
Q ss_pred ccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCccccccccc
Q 038779 93 TDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELN 172 (420)
Q Consensus 93 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~ 172 (420)
++|.+++. | .+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.+.+. ..+..
T Consensus 95 s~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~----------------- 151 (605)
T 1m9s_A 95 DENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR----------------- 151 (605)
T ss_dssp CSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGS-----------------
T ss_pred cCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcc-----------------
Confidence 88888743 3 677888888888888888753 4577888888888888887632 12211
Q ss_pred chhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCC
Q 038779 173 LEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVR 252 (420)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 252 (420)
+++|+.|+|++|.+++..| +..+++|+
T Consensus 152 ---------------------------------------------------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 152 ---------------------------------------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp ---------------------------------------------------CTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ---------------------------------------------------cCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 5678888888888876555 77788888
Q ss_pred EEecCCcccccccchhhhccCCCCEEeCCCCcCcccC
Q 038779 253 SLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRV 289 (420)
Q Consensus 253 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 289 (420)
.|+|++|.+++. +.+..+++|+.|+|++|++.+..
T Consensus 179 ~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 179 NLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp EEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred EEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 888888888743 34777888888888888877543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=1.8e-20 Score=165.05 Aligned_cols=142 Identities=20% Similarity=0.177 Sum_probs=120.1
Q ss_pred ecCCccccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhh
Q 038779 4 GHIPSWIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALF 82 (420)
Q Consensus 4 g~ip~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~ 82 (420)
+.+|..+. ++|++|+|++|.+++..|..|..+++|+.|+|++|++..+.+..| .+++|++|+|++|++++..+..|.
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 109 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence 35676554 788999999999988888888888999999999999887777777 888999999999999877777788
Q ss_pred CCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccC
Q 038779 83 RSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGS 148 (420)
Q Consensus 83 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 148 (420)
.+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|.+...
T Consensus 110 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 8899999999999988 6678888889999999999999877777788889999999999988744
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=1.1e-20 Score=188.82 Aligned_cols=180 Identities=23% Similarity=0.292 Sum_probs=153.1
Q ss_pred ccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCc
Q 038779 10 IGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELL 88 (420)
Q Consensus 10 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 88 (420)
+..+++|+.|++++|.++. ++ .+..+++|+.|+|++|.+.+..+ + .+++|+.|+|++|.+++ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 4568899999999999984 44 58999999999999999998766 7 99999999999999985 33 789999999
Q ss_pred EEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCccccc
Q 038779 89 TLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYG 168 (420)
Q Consensus 89 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~ 168 (420)
.|+|++|.+++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+..| +..
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~------------- 173 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG------------- 173 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT-------------
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc-------------
Confidence 999999999864 4688999999999999999965 679999999999999999985444 322
Q ss_pred ccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCc
Q 038779 169 IELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGEL 248 (420)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 248 (420)
+++|+.|+|++|.|++. +.+..+
T Consensus 174 -------------------------------------------------------l~~L~~L~Ls~N~i~~l--~~l~~l 196 (605)
T 1m9s_A 174 -------------------------------------------------------LTKLQNLYLSKNHISDL--RALAGL 196 (605)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCCBC--GGGTTC
T ss_pred -------------------------------------------------------CCCCCEEECcCCCCCCC--hHHccC
Confidence 67899999999999864 468899
Q ss_pred cCCCEEecCCcccccccchhhhc
Q 038779 249 QNVRSLNLSHNYLSGSIPESFFN 271 (420)
Q Consensus 249 ~~L~~L~Ls~N~l~~~~~~~~~~ 271 (420)
++|+.|+|++|.+.+.....+..
T Consensus 197 ~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 197 KNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp TTCSEEECCSEEEECCCCCCCSS
T ss_pred CCCCEEEccCCcCcCCccccccc
Confidence 99999999999998654433333
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.84 E-value=1.8e-23 Score=207.69 Aligned_cols=38 Identities=13% Similarity=0.007 Sum_probs=27.5
Q ss_pred cCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCc
Q 038779 11 GNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENC 49 (420)
Q Consensus 11 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 49 (420)
..+++|+.|+|++|+++ .+|+.++++++|+.|++++|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~ 383 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKW 383 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccch
Confidence 45677777777777776 567777777777777776654
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=1e-20 Score=170.10 Aligned_cols=123 Identities=19% Similarity=0.280 Sum_probs=82.6
Q ss_pred CCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEe
Q 038779 13 FPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLD 91 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 91 (420)
+.++..++++++.+++.. .+..+++|+.|++++|.++.. + .+ .+++|++|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455667777777777433 466777777888877777743 3 45 77777777777777775433 77777777777
Q ss_pred cccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccc
Q 038779 92 LTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 92 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
|++|++++. |. +.. ++|++|++++|++++. ..+..+++|+.|++++|+++
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence 777777643 32 222 6777777777777643 34667777777777777765
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=4e-20 Score=166.27 Aligned_cols=170 Identities=21% Similarity=0.233 Sum_probs=106.2
Q ss_pred CCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEe
Q 038779 60 LSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMD 139 (420)
Q Consensus 60 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 139 (420)
+.++..+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344455555555555322 35556666666666666653 23 45566666666666666664433 66666666666
Q ss_pred CcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCcccc
Q 038779 140 LSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELY 219 (420)
Q Consensus 140 L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (420)
+++|++.+ +|..
T Consensus 92 L~~N~l~~-l~~~------------------------------------------------------------------- 103 (263)
T 1xeu_A 92 VNRNRLKN-LNGI------------------------------------------------------------------- 103 (263)
T ss_dssp CCSSCCSC-CTTC-------------------------------------------------------------------
T ss_pred CCCCccCC-cCcc-------------------------------------------------------------------
Confidence 66666652 2210
Q ss_pred CCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCC
Q 038779 220 NGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFL 299 (420)
Q Consensus 220 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 299 (420)
. .++|+.|++++|++++. +.+..+++|+.|++++|++++. + .+..+++|+.|++++|++++. ..+..+++|
T Consensus 104 --~-~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 104 --P-SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp --C-CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred --c-cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 0 14566777777777643 2466777777777777777743 3 577777778888888777755 557777778
Q ss_pred CEEEcccCcCccc
Q 038779 300 SNFNVSYNNLSGL 312 (420)
Q Consensus 300 ~~L~L~~N~l~~~ 312 (420)
++|++++|++++.
T Consensus 175 ~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 175 NWIDLTGQKCVNE 187 (263)
T ss_dssp CEEEEEEEEEECC
T ss_pred CEEeCCCCcccCC
Confidence 8888888877665
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=1.1e-19 Score=155.40 Aligned_cols=92 Identities=23% Similarity=0.293 Sum_probs=72.9
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 55677777777777767677777788888888888888877777788888888888888888887788888888888888
Q ss_pred cccCcCcccCCC
Q 038779 304 VSYNNLSGLVPD 315 (420)
Q Consensus 304 L~~N~l~~~~p~ 315 (420)
+++|+++|.++.
T Consensus 133 L~~N~l~c~c~l 144 (192)
T 1w8a_A 133 LASNPFNCNCHL 144 (192)
T ss_dssp CTTCCBCCSGGG
T ss_pred eCCCCccCcCcc
Confidence 888888887753
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1.3e-19 Score=155.80 Aligned_cols=83 Identities=20% Similarity=0.299 Sum_probs=49.0
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcc-cccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNY-LSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNF 302 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 302 (420)
+++|+.|++++|++++..+..++.+++|++|++++|. ++ .+| .+..+++|++|++++|++++. + .+..+++|++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEE
Confidence 4455566666666655555556666666666666665 44 344 466666667777776666642 2 45666667777
Q ss_pred EcccCcCc
Q 038779 303 NVSYNNLS 310 (420)
Q Consensus 303 ~L~~N~l~ 310 (420)
++++|++.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 77777654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=2.2e-19 Score=154.29 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=29.4
Q ss_pred ccCCCeEEccCCc-cccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCc
Q 038779 224 LDYMSGLDLSCNE-LTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLR 286 (420)
Q Consensus 224 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 286 (420)
+++|+.|++++|. ++ .++ .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++.
T Consensus 135 l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 3445555555554 33 222 34555556666666665553 22 4555666666666666554
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=1.1e-19 Score=169.26 Aligned_cols=266 Identities=13% Similarity=0.097 Sum_probs=165.5
Q ss_pred ecCCccccC--CCCCCEEEcccCcccccCChhhhc-CCCCCEEEccCCcCc--ccCCcCcCCCCCcEEECcCCcccccCC
Q 038779 4 GHIPSWIGN--FPVLAVMIMSKNRLEGNIPPELSK-FGGPLILDVSENCLS--GNMPSSLNLSSLKHLYLRKNGFNGPIP 78 (420)
Q Consensus 4 g~ip~~~~~--l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~i~--~~~~~~~~l~~L~~L~L~~n~l~~~~~ 78 (420)
|.++..+.. +.+++.|.++++- ....-..+.. +++|+.|||++|+|. ...+..+ +.++.+.+..|. +.+
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~--~~~~~~~~~~~~---I~~ 86 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY--PNGKFYIYMANF---VPA 86 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS--GGGCCEEECTTE---ECT
T ss_pred CcHHhhccchhhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccc--cccccccccccc---cCH
Confidence 444444443 6678889888752 2222223444 788999999999988 3333332 113444444443 334
Q ss_pred hhhhC--------CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcc----c
Q 038779 79 NALFR--------SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRF----N 146 (420)
Q Consensus 79 ~~~~~--------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~ 146 (420)
.+|.+ +.+|+.|+|.+ .++.+.+.+|.++++|+.|++.+|.++.+.+.+|..+.++..+.+..+.. .
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~ 165 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKN 165 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTST
T ss_pred HHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccc
Confidence 55666 77777777776 66666666777777777777777776666666676666666665554221 0
Q ss_pred cCCCcccccccccc-------------------cCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcce
Q 038779 147 GSIPSCLTSVSFWS-------------------QGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVE 207 (420)
Q Consensus 147 ~~~p~~l~~l~~l~-------------------~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (420)
......+.++..+. .....+........... ....
T Consensus 166 ~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~----------~~~~---------------- 219 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN----------ADFK---------------- 219 (329)
T ss_dssp TTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH----------HHHH----------------
T ss_pred cccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH----------HHHH----------------
Confidence 00011111111111 00111111111100000 0000
Q ss_pred EEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCC-EEeCCCCcCc
Q 038779 208 VEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTE-SLDLSYNRLR 286 (420)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~ 286 (420)
.....+++|+.++|++|+++.+.+..|.++++|+.++|++| ++...+.+|.++++|+ .+++.+ .++
T Consensus 220 -----------~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 220 -----------LIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp -----------HHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred -----------HHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence 00011578999999999999888888999999999999998 7767778899999999 999998 788
Q ss_pred ccCCccccCCCCCCEEEcccCcCcccCCC
Q 038779 287 GRVSPRLTELNFLSNFNVSYNNLSGLVPD 315 (420)
Q Consensus 287 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 315 (420)
.+.+.+|.++++|+.+++++|.++...+.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred EEchhhhhCCccCCEEEeCCCccCccchh
Confidence 78888999999999999999998877654
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=4.3e-22 Score=197.82 Aligned_cols=90 Identities=28% Similarity=0.275 Sum_probs=71.5
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccC-CccccCCCCCCEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRV-SPRLTELNFLSNF 302 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 302 (420)
+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++ +| .+.++++|+.|+|++|+|++.. |..+..+++|++|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 567888888888887 677788888888888888888885 55 6888888888888888888766 7788888888888
Q ss_pred EcccCcCcccCCCC
Q 038779 303 NVSYNNLSGLVPDK 316 (420)
Q Consensus 303 ~L~~N~l~~~~p~~ 316 (420)
++++|++++.+|..
T Consensus 539 ~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 539 NLQGNSLCQEEGIQ 552 (567)
T ss_dssp ECTTSGGGGSSSCT
T ss_pred EecCCcCCCCccHH
Confidence 88888888776653
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=5.1e-19 Score=151.27 Aligned_cols=131 Identities=24% Similarity=0.301 Sum_probs=120.4
Q ss_pred CEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCc-Cc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEeccc
Q 038779 17 AVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPS-SL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTD 94 (420)
Q Consensus 17 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~-~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 94 (420)
+.+++++|.++ .+|..+.. +++.|++++|++++..+. .| .+++|++|++++|++++..|.+|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999997 67766543 999999999999988775 47 999999999999999999899999999999999999
Q ss_pred CcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCC
Q 038779 95 NHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIP 150 (420)
Q Consensus 95 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 150 (420)
|+|++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999999999999999999999999999999999999999999999986544
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=2e-21 Score=195.55 Aligned_cols=150 Identities=9% Similarity=0.042 Sum_probs=99.0
Q ss_pred cCCCCCCEEEcccCccccc----CChhhhcCCCCCEEEccCCcCcc----cCCcCc-CCCCCcEEECcCCcccccCChhh
Q 038779 11 GNFPVLAVMIMSKNRLEGN----IPPELSKFGGPLILDVSENCLSG----NMPSSL-NLSSLKHLYLRKNGFNGPIPNAL 81 (420)
Q Consensus 11 ~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~i~~----~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~ 81 (420)
..+++|++|+|++|.+++. ++..+..+++|+.|++++|.+++ ..+..+ .+++|++|++++|.+.+ ++..+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~ 239 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF 239 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence 4577888888888877655 33345667888888888888763 233334 67888888888887764 55666
Q ss_pred hCCCCCcEEecccCcc--------------------------cccCCcCCCCCCCCcEEEcccccccccCC-ccccCCCC
Q 038779 82 FRSSELLTLDLTDNHF--------------------------SGRIPHQINTLSNLRVLLLRGNYLQGPIP-NQLCELQK 134 (420)
Q Consensus 82 ~~l~~L~~L~L~~N~l--------------------------~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 134 (420)
..+++|++|+++.... ...+|..+..+++|++|++++|.+++... ..+..+++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 6667777776653211 12334556678899999999998764433 34678899
Q ss_pred CcEEeCcCCccccC-CC---cccccccccccC
Q 038779 135 LGIMDLSHNRFNGS-IP---SCLTSVSFWSQG 162 (420)
Q Consensus 135 L~~L~L~~N~l~~~-~p---~~l~~l~~l~~~ 162 (420)
|+.|+++ +.+... ++ ..+.+|+.|++.
T Consensus 320 L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 320 LEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 9999998 443321 22 234566777766
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.9e-20 Score=191.70 Aligned_cols=96 Identities=27% Similarity=0.308 Sum_probs=54.0
Q ss_pred CCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCC
Q 038779 54 MPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCEL 132 (420)
Q Consensus 54 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 132 (420)
.++.| .++.|++|+|++|++. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|+|+ .+|..|..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 34445 5666666666666665 44444556666666666666665 55555666666666666666666 445566666
Q ss_pred CCCcEEeCcCCccccCCCccc
Q 038779 133 QKLGIMDLSHNRFNGSIPSCL 153 (420)
Q Consensus 133 ~~L~~L~L~~N~l~~~~p~~l 153 (420)
++|++|+|++|.+. .+|..+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~ 312 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEF 312 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSST
T ss_pred CCCCEEECCCCCCC-ccChhh
Confidence 66666666666654 444433
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=5.1e-20 Score=188.48 Aligned_cols=137 Identities=19% Similarity=0.243 Sum_probs=106.7
Q ss_pred CCEEEcccCcccc---------cCChhhhcCCCCCEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCC
Q 038779 16 LAVMIMSKNRLEG---------NIPPELSKFGGPLILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSE 86 (420)
Q Consensus 16 L~~L~Ls~n~l~~---------~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 86 (420)
++.++|+.|.|.+ ..++.|..+++|+.|+|++|.+..+.+..+.+++|++|+|++|+++ .+|..|.++++
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 271 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN 271 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence 4445555554443 4578899999999999999999954444449999999999999999 78999999999
Q ss_pred CcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccccc
Q 038779 87 LLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTS 155 (420)
Q Consensus 87 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 155 (420)
|++|+|++|.|+ .+|..|..+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.+.+.+|..+..
T Consensus 272 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 272 LRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 999999999999 77999999999999999999998 67888999999999999999999888877654
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.78 E-value=7.2e-19 Score=147.01 Aligned_cols=137 Identities=19% Similarity=0.176 Sum_probs=121.8
Q ss_pred CCCCCCEEEcccCccc-ccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcE
Q 038779 12 NFPVLAVMIMSKNRLE-GNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLT 89 (420)
Q Consensus 12 ~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 89 (420)
..++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+ .+++|++|++++|++++..|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3578999999999998 67888899999999999999999976 667 9999999999999999878888888999999
Q ss_pred EecccCcccccC-CcCCCCCCCCcEEEcccccccccCC---ccccCCCCCcEEeCcCCccccCCCc
Q 038779 90 LDLTDNHFSGRI-PHQINTLSNLRVLLLRGNYLQGPIP---NQLCELQKLGIMDLSHNRFNGSIPS 151 (420)
Q Consensus 90 L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p~ 151 (420)
|+|++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. ..|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 999999998643 2789999999999999999996655 58999999999999999986 4443
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=148.86 Aligned_cols=91 Identities=23% Similarity=0.197 Sum_probs=79.6
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
+++|+.|+|++|.|++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 56777788888888877777888899999999999999988888899999999999999999977777899999999999
Q ss_pred cccCcCcccCC
Q 038779 304 VSYNNLSGLVP 314 (420)
Q Consensus 304 L~~N~l~~~~p 314 (420)
+++|++.|.|.
T Consensus 133 L~~N~~~C~c~ 143 (193)
T 2wfh_A 133 IGANPLYCDCN 143 (193)
T ss_dssp CCSSCEECSGG
T ss_pred eCCCCeecCCc
Confidence 99999999884
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.76 E-value=1.2e-18 Score=142.69 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=114.9
Q ss_pred CCCCCEEEcccCccc-ccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEE
Q 038779 13 FPVLAVMIMSKNRLE-GNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTL 90 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 90 (420)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+ .+++|++|++++|++++..|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 478999999999998 78888889999999999999999976 666 99999999999999997788888889999999
Q ss_pred ecccCccccc-CCcCCCCCCCCcEEEcccccccccCC---ccccCCCCCcEEeCcC
Q 038779 91 DLTDNHFSGR-IPHQINTLSNLRVLLLRGNYLQGPIP---NQLCELQKLGIMDLSH 142 (420)
Q Consensus 91 ~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~ 142 (420)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999864 34789999999999999999997766 5799999999999864
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=7.3e-18 Score=144.09 Aligned_cols=127 Identities=23% Similarity=0.282 Sum_probs=116.1
Q ss_pred CEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccC
Q 038779 17 AVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDN 95 (420)
Q Consensus 17 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 95 (420)
+.+++++|.++ .+|..+. ++|+.|++++|.++ .+|..| .+++|++|++++|++++..+.+|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 68999999999 5676553 68999999999998 566788 9999999999999999888899999999999999999
Q ss_pred cccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCcccc
Q 038779 96 HFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNG 147 (420)
Q Consensus 96 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 147 (420)
+|+++.+.+|.++++|++|+|++|+++...+..|..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9999888999999999999999999998777789999999999999999863
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=6.3e-20 Score=184.58 Aligned_cols=263 Identities=13% Similarity=-0.007 Sum_probs=173.2
Q ss_pred CCccccCCCCCCEEEcccCccc---ccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCC-hh
Q 038779 6 IPSWIGNFPVLAVMIMSKNRLE---GNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIP-NA 80 (420)
Q Consensus 6 ip~~~~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~-~~ 80 (420)
+|..+..+++|+.|+++..... ...+..+..+++|+.|+++++... ..|..+ .+++|++|++++|.+++... ..
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 6677888899999999864322 234455677888999988886433 456666 78889999999888764333 34
Q ss_pred hhCCCCCcEEecccCccc-ccCCcCCCCCCCCcEEEccc-----------ccccccC-CccccCCCCCcEEeCcCCcccc
Q 038779 81 LFRSSELLTLDLTDNHFS-GRIPHQINTLSNLRVLLLRG-----------NYLQGPI-PNQLCELQKLGIMDLSHNRFNG 147 (420)
Q Consensus 81 ~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~-----------N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 147 (420)
+..+++|++|+++ +.+. +..+..+..+++|++|++++ |.++... +.....+++|++|+++.|.+++
T Consensus 314 ~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 314 IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 5778889999988 4443 23333445678899999883 5555332 2224568889999988888875
Q ss_pred CCCccc----ccccccccC----CcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCcccc
Q 038779 148 SIPSCL----TSVSFWSQG----KNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELY 219 (420)
Q Consensus 148 ~~p~~l----~~l~~l~~~----~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (420)
..+..+ .+++.|.+. .|.+...+...... .
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~------------------------------------------~ 430 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR------------------------------------------S 430 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH------------------------------------------H
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH------------------------------------------H
Confidence 544333 335555542 22232211110000 0
Q ss_pred CCccccCCCeEEccCCc--cccCCCcccc-CccCCCEEecCCccccc-ccchhhhccCCCCEEeCCCCcCccc-CCcccc
Q 038779 220 NGSNLDYMSGLDLSCNE--LTGGIPVEIG-ELQNVRSLNLSHNYLSG-SIPESFFNLKMTESLDLSYNRLRGR-VSPRLT 294 (420)
Q Consensus 220 ~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 294 (420)
....+++|+.|++++|. +++..+..+. .+++|+.|++++|.+++ .++..+.++++|++|++++|.+++. .+..+.
T Consensus 431 ~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 431 LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 01226789999997543 5554444443 37889999999999886 3455668889999999999998754 333446
Q ss_pred CCCCCCEEEcccCcCccc
Q 038779 295 ELNFLSNFNVSYNNLSGL 312 (420)
Q Consensus 295 ~l~~L~~L~L~~N~l~~~ 312 (420)
.+++|++|++++|+++..
T Consensus 511 ~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HCSSCCEEEEESCBCCTT
T ss_pred hcCccCeeECcCCcCCHH
Confidence 788999999999997654
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=1.7e-17 Score=139.94 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=118.3
Q ss_pred CCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEeccc
Q 038779 16 LAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTD 94 (420)
Q Consensus 16 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 94 (420)
.+.++++++.++ .+|..+ .++|+.|++++|++++..+..| .+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 578999999998 456544 3799999999999998888888 999999999999999988778889999999999999
Q ss_pred CcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCC
Q 038779 95 NHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIP 150 (420)
Q Consensus 95 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 150 (420)
|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99998888889999999999999999998777778999999999999999986544
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.3e-17 Score=155.01 Aligned_cols=215 Identities=11% Similarity=0.028 Sum_probs=151.8
Q ss_pred CCCCCEEEcccCccc--ccCChhhhcCCCCCEEEccCCcCcccCCcCc-C--------CCCCcEEECcCCcccccCChhh
Q 038779 13 FPVLAVMIMSKNRLE--GNIPPELSKFGGPLILDVSENCLSGNMPSSL-N--------LSSLKHLYLRKNGFNGPIPNAL 81 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~--------l~~L~~L~L~~n~l~~~~~~~~ 81 (420)
+++|++|||++|+++ ...+..+. .++.+.+..| .+.+.+| + +++|+.++|.+ .++.+.+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccccc---cccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 788999999999998 32222222 2344444444 2334445 5 66777777766 6665666666
Q ss_pred hCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccc----cccCCccc----------------------------
Q 038779 82 FRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYL----QGPIPNQL---------------------------- 129 (420)
Q Consensus 82 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~~~~~---------------------------- 129 (420)
.++++|+.+++++|.+..+.+.+|.++.++..+.+..+.. ....+.+|
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 6677777777777666666666666666666655544211 00000011
Q ss_pred ----------------------cCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccC
Q 038779 130 ----------------------CELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDN 187 (420)
Q Consensus 130 ----------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~ 187 (420)
..+++|+.++|++|+++...+..|.+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~-------------------------------- 248 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ-------------------------------- 248 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT--------------------------------
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhC--------------------------------
Confidence 13789999999999887333333433
Q ss_pred cccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCC-EEecCCcccccccc
Q 038779 188 SNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVR-SLNLSHNYLSGSIP 266 (420)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~ 266 (420)
+.+|+.++|.+| ++.+.+..|.++++|+ .+++.+ .++...+
T Consensus 249 ------------------------------------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 249 ------------------------------------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp ------------------------------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred ------------------------------------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch
Confidence 678999999998 8878888999999999 999999 7886778
Q ss_pred hhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEc
Q 038779 267 ESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNV 304 (420)
Q Consensus 267 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 304 (420)
.+|.++++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 89999999999999999999888889999999999863
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=1.5e-17 Score=138.88 Aligned_cols=62 Identities=21% Similarity=0.120 Sum_probs=30.1
Q ss_pred cCCCeEEccCCccccCC-CccccCccCCCEEecCCcccccccc---hhhhccCCCCEEeCCCCcCc
Q 038779 225 DYMSGLDLSCNELTGGI-PVEIGELQNVRSLNLSHNYLSGSIP---ESFFNLKMTESLDLSYNRLR 286 (420)
Q Consensus 225 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~ 286 (420)
++|+.|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 34444444444444321 1344455555555555555553332 24555555555555555554
No 129
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=2.4e-19 Score=180.45 Aligned_cols=295 Identities=15% Similarity=0.087 Sum_probs=147.7
Q ss_pred CCCCCCEEEcccC-ccccc-CChhhhcCCCCCEEEccCCcCcccCCcCc-----CCCCCcEEECcCCc--ccc-cCChhh
Q 038779 12 NFPVLAVMIMSKN-RLEGN-IPPELSKFGGPLILDVSENCLSGNMPSSL-----NLSSLKHLYLRKNG--FNG-PIPNAL 81 (420)
Q Consensus 12 ~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-----~l~~L~~L~L~~n~--l~~-~~~~~~ 81 (420)
.+++|++|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+ .+++|++|++++|. ++. .++..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 4666777777766 44432 33334466677777777776554332222 45566666666665 110 011112
Q ss_pred hCCCCCcEEecccCc--------------------------------------------------cccc----CCcCCCC
Q 038779 82 FRSSELLTLDLTDNH--------------------------------------------------FSGR----IPHQINT 107 (420)
Q Consensus 82 ~~l~~L~~L~L~~N~--------------------------------------------------l~~~----~p~~~~~ 107 (420)
..+++|++|++++|. +... ++..+..
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 234556666665541 1101 1112225
Q ss_pred CCCCcEEEcccccccccCC-ccccCCCCCcEEeCcCCccccC-CC---cccccccccccCC---------cccccccccc
Q 038779 108 LSNLRVLLLRGNYLQGPIP-NQLCELQKLGIMDLSHNRFNGS-IP---SCLTSVSFWSQGK---------NDLYGIELNL 173 (420)
Q Consensus 108 l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~p---~~l~~l~~l~~~~---------n~l~~~~~~~ 173 (420)
+++|++|++++|.++.... ..+..+++|+.|++++| +... ++ ..+.+|+.|.+.. +.+.......
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 6899999999999764322 33568899999999988 4321 11 2345566665522 2222111111
Q ss_pred hhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCcc---ccCCccccCCCeEEcc--C----CccccCC---
Q 038779 174 EWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNE---LYNGSNLDYMSGLDLS--C----NELTGGI--- 241 (420)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls--~----n~l~~~~--- 241 (420)
.... ...+. .+......... ......+++|+.|+++ + +.+++..
T Consensus 367 l~~~----~~~L~--------------------~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 367 VSMG----CPKLE--------------------SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp HHHH----CTTCC--------------------EEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred HHHh----chhHH--------------------HHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence 0000 00000 11000000000 0000125667777776 3 4444211
Q ss_pred --CccccCccCCCEEecCCcccccccchhhhc-cCCCCEEeCCCCcCcccCCccc-cCCCCCCEEEcccCcCcccCCC--
Q 038779 242 --PVEIGELQNVRSLNLSHNYLSGSIPESFFN-LKMTESLDLSYNRLRGRVSPRL-TELNFLSNFNVSYNNLSGLVPD-- 315 (420)
Q Consensus 242 --~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~-- 315 (420)
+..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|+++.....
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 11245566777777766 555444444444 6677777777777655444433 4567777777777776432211
Q ss_pred CCcCCccCcccccCCcC
Q 038779 316 KGQFAIFDESNYRGNIH 332 (420)
Q Consensus 316 ~~~~~~l~~~~~~~n~~ 332 (420)
...++.++.+++.+|+.
T Consensus 502 ~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGGSSEEEEESSCC
T ss_pred HHhCCCCCEEeeeCCCC
Confidence 22355666666666653
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=3e-17 Score=134.20 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCcEEecccCccc-ccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccc
Q 038779 86 ELLTLDLTDNHFS-GRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 86 ~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~ 77 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS 77 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc
Confidence 4445555555544 34444444555555555555555433 34444445555555555444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=8.8e-17 Score=135.47 Aligned_cols=92 Identities=22% Similarity=0.191 Sum_probs=71.3
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 45566666666666655555667778888888888888866666778888888888888888876666678888999999
Q ss_pred cccCcCcccCCC
Q 038779 304 VSYNNLSGLVPD 315 (420)
Q Consensus 304 L~~N~l~~~~p~ 315 (420)
+++|++.|.+|.
T Consensus 131 l~~N~~~~~~~~ 142 (177)
T 2o6r_A 131 LHTNPWDCSCPR 142 (177)
T ss_dssp CCSSCBCCCHHH
T ss_pred ecCCCeeccCcc
Confidence 999999888764
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.70 E-value=4e-17 Score=137.42 Aligned_cols=133 Identities=15% Similarity=0.122 Sum_probs=113.9
Q ss_pred cccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCC
Q 038779 9 WIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSEL 87 (420)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 87 (420)
.+.++++|++|++++|.++. +|......++|+.|++++|.+++. ..+ .+++|++|++++|++++..+..|..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 46678999999999999994 465333344999999999999976 567 99999999999999997766777999999
Q ss_pred cEEecccCcccccCCc--CCCCCCCCcEEEcccccccccCCc----cccCCCCCcEEeCcCCccc
Q 038779 88 LTLDLTDNHFSGRIPH--QINTLSNLRVLLLRGNYLQGPIPN----QLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 88 ~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~ 146 (420)
++|+|++|.++ .+|. .+..+++|++|++++|.++. .|. .+..+++|+.||+++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999997 4555 78899999999999999984 455 4899999999999999875
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=4.3e-19 Score=178.53 Aligned_cols=308 Identities=14% Similarity=0.096 Sum_probs=194.5
Q ss_pred cCCCCCCEEEcccCcccccCChhhh-cCCCCCEEEccCC-cCccc-CCcCc-CCCCCcEEECcCCcccccCChhhh----
Q 038779 11 GNFPVLAVMIMSKNRLEGNIPPELS-KFGGPLILDVSEN-CLSGN-MPSSL-NLSSLKHLYLRKNGFNGPIPNALF---- 82 (420)
Q Consensus 11 ~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n-~i~~~-~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~---- 82 (420)
..+++|++|+|++|.+++..+..+. .+++|+.|+|++| .+... .+..+ .+++|++|++++|.+++..+..+.
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4688999999999999887777776 6999999999999 55532 33444 799999999999998876555554
Q ss_pred CCCCCcEEecccCc--ccc-cCCcCCCCCCCCcEEEccccc-c-------------------------------------
Q 038779 83 RSSELLTLDLTDNH--FSG-RIPHQINTLSNLRVLLLRGNY-L------------------------------------- 121 (420)
Q Consensus 83 ~l~~L~~L~L~~N~--l~~-~~p~~~~~l~~L~~L~L~~N~-l------------------------------------- 121 (420)
.+++|++|++++|. ++. .++..+..+++|++|++++|. +
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 56799999999997 221 111112346888888888761 1
Q ss_pred ------------ccc----CCccccCCCCCcEEeCcCCccccCCC----cccccccccccCCcccccccccchhhccCCC
Q 038779 122 ------------QGP----IPNQLCELQKLGIMDLSHNRFNGSIP----SCLTSVSFWSQGKNDLYGIELNLEWDLGAGA 181 (420)
Q Consensus 122 ------------~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~ 181 (420)
... ++..+..+++|+.|++++|.+.+... ..+.+|+.|.+.++ +...........
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~---- 336 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST---- 336 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH----
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh----
Confidence 000 12222356899999999999764322 24566777777665 221111111000
Q ss_pred CCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCcccc-CccCCCEEecC--C
Q 038779 182 AGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIG-ELQNVRSLNLS--H 258 (420)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls--~ 258 (420)
...+..+.+.......... ... ..... .......+++|+.|.+++|.+++.....+. .+++|+.|+++ +
T Consensus 337 ~~~L~~L~L~~~~~~g~~~----~~~---l~~~~-l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEP----NVA---LTEQG-LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp CTTCCEEEEECSCTTCSSC----SSC---CCHHH-HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred CCCCCEEEEecCccccccc----CCC---CCHHH-HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 1111111111000000000 000 00000 000012268999999999999876555554 58999999999 4
Q ss_pred ----ccccc-----ccchhhhccCCCCEEeCCCCcCcccCCccccC-CCCCCEEEcccCcCcccCCC--CCcCCccCccc
Q 038779 259 ----NYLSG-----SIPESFFNLKMTESLDLSYNRLRGRVSPRLTE-LNFLSNFNVSYNNLSGLVPD--KGQFAIFDESN 326 (420)
Q Consensus 259 ----N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~p~--~~~~~~l~~~~ 326 (420)
+.+++ .++..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++.... ...++.++.++
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 56662 2333477889999999988 676655555555 88999999999998654322 13467889999
Q ss_pred ccCCcC
Q 038779 327 YRGNIH 332 (420)
Q Consensus 327 ~~~n~~ 332 (420)
+.+|+.
T Consensus 488 L~~n~~ 493 (594)
T 2p1m_B 488 IRDCPF 493 (594)
T ss_dssp EESCSC
T ss_pred CcCCCC
Confidence 998875
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1.3e-15 Score=144.77 Aligned_cols=240 Identities=8% Similarity=0.024 Sum_probs=165.0
Q ss_pred CCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEe
Q 038779 13 FPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLD 91 (420)
Q Consensus 13 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 91 (420)
+..++.+.+.++ ++.+...+|.+. +|+.+++.++ ++.+...+| + .+|+.+.+.. .++.+.+.+|.++.+|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 456777777654 455667778774 7888888776 777777888 5 4688888875 67667778888888888888
Q ss_pred cccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccccc--ccccccCCcccccc
Q 038779 92 LTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTS--VSFWSQGKNDLYGI 169 (420)
Q Consensus 92 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~l~~~~n~l~~~ 169 (420)
|++|.++.+...+|. ..+|+.+.+..+ ++.+...+|.++++|+.+++..| ++..-...|.+ ++.+.+ .+.+..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~- 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTN- 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCE-
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccE-
Confidence 888888877777777 578888888744 66677788888888888888764 33122222222 111111 000000
Q ss_pred cccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccc-----cCCCcc
Q 038779 170 ELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELT-----GGIPVE 244 (420)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~ 244 (420)
.....+..+++|+.+++.+|.+. ...+..
T Consensus 262 ----------------------------------------------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 262 ----------------------------------------------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp ----------------------------------------------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred ----------------------------------------------EChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 01112233677888888777654 355667
Q ss_pred ccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcc
Q 038779 245 IGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSG 311 (420)
Q Consensus 245 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 311 (420)
|.++++|+.+++. +.++.....+|.++++|+.+++.+| ++.+...+|.++ +|+.+++.+|....
T Consensus 296 F~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 296 LEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred hhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 8888888888888 4477566777888888888888555 666677788888 88888888886644
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=1.2e-15 Score=145.03 Aligned_cols=248 Identities=9% Similarity=-0.000 Sum_probs=181.4
Q ss_pred cccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCC
Q 038779 9 WIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSEL 87 (420)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 87 (420)
.|.++ +|+.+.+..+ ++.+...+|.+ .+|+.+.+.+ .++.+.+.+| ++++|+.+++.+|+++.+...+|. ..+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 45554 6899998877 66677778877 4799999886 6777788888 889999999998888876667776 5789
Q ss_pred cEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccccccc---ccccCCc
Q 038779 88 LTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVS---FWSQGKN 164 (420)
Q Consensus 88 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~---~l~~~~n 164 (420)
+.+.|..+ ++.+...+|.++++|+.+++..| ++.+...+|.+ .+|+.+.+. +.+...-...|.++. .+.+..+
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESS
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCc
Confidence 99988854 77677888989999999988865 56566777877 788888884 445433344444443 3322222
Q ss_pred ccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCCCcc
Q 038779 165 DLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVE 244 (420)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 244 (420)
.+..... . ......+..+++|+.++|. +.++......
T Consensus 282 ~~~~~~~-------------------~-----------------------~I~~~aF~~c~~L~~l~l~-~~i~~I~~~a 318 (401)
T 4fdw_A 282 TFNDDPE-------------------A-----------------------MIHPYCLEGCPKLARFEIP-ESIRILGQGL 318 (401)
T ss_dssp CCCCCTT-------------------C-----------------------EECTTTTTTCTTCCEECCC-TTCCEECTTT
T ss_pred cccCCcc-------------------c-----------------------EECHHHhhCCccCCeEEeC-CceEEEhhhh
Confidence 2110000 0 0111222347899999999 4588778889
Q ss_pred ccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCC-CCCEEEcccCcCc
Q 038779 245 IGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELN-FLSNFNVSYNNLS 310 (420)
Q Consensus 245 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 310 (420)
|.++++|+.++|..| ++.....+|.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+.
T Consensus 319 F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 999999999999665 776778889999 999999999999877778888885 7889998887654
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=1.3e-16 Score=133.33 Aligned_cols=96 Identities=21% Similarity=0.134 Sum_probs=87.5
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
.++|+.|+|++|+|++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 46789999999999988899999999999999999999987778899999999999999999988888899999999999
Q ss_pred cccCcCcccCCCCCcC
Q 038779 304 VSYNNLSGLVPDKGQF 319 (420)
Q Consensus 304 L~~N~l~~~~p~~~~~ 319 (420)
+++|+++|.|+....+
T Consensus 109 L~~N~~~c~c~~l~~l 124 (170)
T 3g39_A 109 LLNNPWDCACSDILYL 124 (170)
T ss_dssp CCSSCBCTTBGGGHHH
T ss_pred eCCCCCCCCchhHHHH
Confidence 9999999998754333
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=6.9e-16 Score=129.82 Aligned_cols=83 Identities=23% Similarity=0.193 Sum_probs=34.1
Q ss_pred CCCCCcEEECcCCcccccCChhhhCCC-CCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcE
Q 038779 59 NLSSLKHLYLRKNGFNGPIPNALFRSS-ELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGI 137 (420)
Q Consensus 59 ~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 137 (420)
.+.+|++|++++|+++. ++. +..+. +|++|+|++|.+++. ..|..+++|++|++++|++++..+..|..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 34444444444444442 222 22222 444444444444432 23444444444444444444332233344444444
Q ss_pred EeCcCCcc
Q 038779 138 MDLSHNRF 145 (420)
Q Consensus 138 L~L~~N~l 145 (420)
|++++|.+
T Consensus 93 L~L~~N~i 100 (176)
T 1a9n_A 93 LILTNNSL 100 (176)
T ss_dssp EECCSCCC
T ss_pred EECCCCcC
Confidence 44444443
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=7.6e-16 Score=129.14 Aligned_cols=96 Identities=22% Similarity=0.158 Sum_probs=86.3
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
.++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 46789999999999988899999999999999999999977777789999999999999999977777799999999999
Q ss_pred cccCcCcccCCCCCcC
Q 038779 304 VSYNNLSGLVPDKGQF 319 (420)
Q Consensus 304 L~~N~l~~~~p~~~~~ 319 (420)
+++|++.|.++....+
T Consensus 112 L~~N~~~c~~~~~~~l 127 (174)
T 2r9u_A 112 LYNNPWDCECRDIMYL 127 (174)
T ss_dssp CCSSCBCTTBGGGHHH
T ss_pred eCCCCcccccccHHHH
Confidence 9999999988654333
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=5e-18 Score=145.90 Aligned_cols=61 Identities=28% Similarity=0.317 Sum_probs=26.4
Q ss_pred cCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccc-hhhhccCCCCEEeCCCCcCcc
Q 038779 225 DYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIP-ESFFNLKMTESLDLSYNRLRG 287 (420)
Q Consensus 225 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~ 287 (420)
++|+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 344444444444442 12 34444444444444444442211 234444444444444444443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=1.1e-17 Score=143.65 Aligned_cols=132 Identities=23% Similarity=0.216 Sum_probs=91.6
Q ss_pred hhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccccccccc
Q 038779 80 ALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFW 159 (420)
Q Consensus 80 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l 159 (420)
.|..+++|++|+|++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~---- 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK---- 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH----
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc----
Confidence 66777777777777777764 45 6667777777777777777 456666666777777777777763 22 2221
Q ss_pred ccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCcccc
Q 038779 160 SQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTG 239 (420)
Q Consensus 160 ~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 239 (420)
+++|+.|++++|.+++
T Consensus 114 ----------------------------------------------------------------l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 114 ----------------------------------------------------------------LVNLRVLYMSNNKITN 129 (198)
T ss_dssp ----------------------------------------------------------------HHHSSEEEESEEECCC
T ss_pred ----------------------------------------------------------------CCCCCEEECCCCcCCc
Confidence 5677888888888774
Q ss_pred CCC-ccccCccCCCEEecCCcccccccch----------hhhccCCCCEEeCCCCcCc
Q 038779 240 GIP-VEIGELQNVRSLNLSHNYLSGSIPE----------SFFNLKMTESLDLSYNRLR 286 (420)
Q Consensus 240 ~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~l~~L~~L~Ls~N~l~ 286 (420)
..+ ..+..+++|++|++++|.+.+.+|. .+..+++|+.|| +|.++
T Consensus 130 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 332 4677888888888888888766554 367778888876 56554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=2.3e-15 Score=125.74 Aligned_cols=104 Identities=24% Similarity=0.321 Sum_probs=56.4
Q ss_pred CEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEccccc
Q 038779 41 LILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNY 120 (420)
Q Consensus 41 ~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 120 (420)
+.+++++|.++. +|..+ .++|++|+|++|++++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+
T Consensus 12 ~~l~~s~n~l~~-ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCc-cCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 444555554443 22222 1445555555555555555555555555555555555555555555556666666666666
Q ss_pred ccccCCccccCCCCCcEEeCcCCccc
Q 038779 121 LQGPIPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 121 l~~~~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
+++..+..|..+++|++|+|++|++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66555555666666666666666655
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.59 E-value=5.9e-15 Score=123.69 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=58.3
Q ss_pred CEEEccCCcCcccCCcCcCCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEccccc
Q 038779 41 LILDVSENCLSGNMPSSLNLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNY 120 (420)
Q Consensus 41 ~~L~Ls~n~i~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 120 (420)
+.+++++|++.. +|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~-iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCc-cCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555542 232221 445555555555555555555555566666666666655444455666666666666666
Q ss_pred ccccCCccccCCCCCcEEeCcCCccc
Q 038779 121 LQGPIPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 121 l~~~~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
|++..+..|..+++|++|+|++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 66554445666666666666666665
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=8.6e-16 Score=144.69 Aligned_cols=186 Identities=13% Similarity=0.071 Sum_probs=114.5
Q ss_pred CCCCCEEEccCCcCcccCCcCc------CCCCCcEEECcCCcccccCChhhh-CCCCCcEEecccCcccccCCcCC----
Q 038779 37 FGGPLILDVSENCLSGNMPSSL------NLSSLKHLYLRKNGFNGPIPNALF-RSSELLTLDLTDNHFSGRIPHQI---- 105 (420)
Q Consensus 37 l~~L~~L~Ls~n~i~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~---- 105 (420)
+++|+.|+|++|.++......+ ..++|++|+|++|.++......+. .+.+|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4577788888887765444333 125788888888877643333332 34578888888888764433333
Q ss_pred -CCCCCCcEEEccccccccc----CCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCC
Q 038779 106 -NTLSNLRVLLLRGNYLQGP----IPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAG 180 (420)
Q Consensus 106 -~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~ 180 (420)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+...-...+.. .+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~--~L--------------------- 207 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA--QL--------------------- 207 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH--HG---------------------
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH--HH---------------------
Confidence 3457788888888887642 3344567888888888888876322111111 00
Q ss_pred CCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccCC----CccccCccCCCEEec
Q 038779 181 AAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGI----PVEIGELQNVRSLNL 256 (420)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L 256 (420)
...++|+.|+|++|.|++.. ...+...++|++|+|
T Consensus 208 -----------------------------------------~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~L 246 (372)
T 3un9_A 208 -----------------------------------------DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246 (372)
T ss_dssp -----------------------------------------GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred -----------------------------------------hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEec
Confidence 01457888888888887532 233445688999999
Q ss_pred CCcccccccchhhhccC-----CCCEEe--CCCCcCc
Q 038779 257 SHNYLSGSIPESFFNLK-----MTESLD--LSYNRLR 286 (420)
Q Consensus 257 s~N~l~~~~~~~~~~l~-----~L~~L~--Ls~N~l~ 286 (420)
++|.|+......+..+. .|+.+. +..|.++
T Consensus 247 s~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 247 YFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp TTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred cCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 99988866555554432 166666 6666655
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=1.1e-13 Score=129.52 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=83.1
Q ss_pred ccCCCeEEccC-CccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 038779 224 LDYMSGLDLSC-NELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNF 302 (420)
Q Consensus 224 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 302 (420)
+++|+.|+|++ |.|++..+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..+..++ |++|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 67899999996 999988889999999999999999999999999999999999999999999987777777776 9999
Q ss_pred EcccCcCcccCC
Q 038779 303 NVSYNNLSGLVP 314 (420)
Q Consensus 303 ~L~~N~l~~~~p 314 (420)
+|.+|++.|.|.
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999999885
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=1.8e-15 Score=142.42 Aligned_cols=87 Identities=20% Similarity=0.143 Sum_probs=42.0
Q ss_pred CCCCcEEECcCCcccccCChhhhCC-----CCCcEEecccCcccccCCcCC-CCCCCCcEEEcccccccccCCccc----
Q 038779 60 LSSLKHLYLRKNGFNGPIPNALFRS-----SELLTLDLTDNHFSGRIPHQI-NTLSNLRVLLLRGNYLQGPIPNQL---- 129 (420)
Q Consensus 60 l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~~~~~---- 129 (420)
++.|++|++++|.++......+... .+|++|+|++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4456666666666654333333222 456666666666543222222 223455566666655543322222
Q ss_pred -cCCCCCcEEeCcCCccc
Q 038779 130 -CELQKLGIMDLSHNRFN 146 (420)
Q Consensus 130 -~~l~~L~~L~L~~N~l~ 146 (420)
...++|+.|+|++|.++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLT 168 (372)
T ss_dssp HSTTCCCCEEECCSSCCH
T ss_pred HhcCCccceeeCCCCCCC
Confidence 23445555555555554
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.45 E-value=5.9e-12 Score=119.79 Aligned_cols=288 Identities=8% Similarity=-0.050 Sum_probs=144.1
Q ss_pred cccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCC
Q 038779 9 WIGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSEL 87 (420)
Q Consensus 9 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 87 (420)
.|.++++|+.+.+..+ ++.+...+|.++++|+.+++.++ ++.+...+| ++..|+.+.+..+ +..+...+|.++..+
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 3667888888888754 66667778888889999988765 666667777 8888887766543 333444555554433
Q ss_pred cEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccccccccc---ccCCc
Q 038779 88 LTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFW---SQGKN 164 (420)
Q Consensus 88 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l---~~~~n 164 (420)
+...... +..+...+|.++++|+.+.+.++. ......+|.++.+|+.+++..+ +.......+.++..| ....+
T Consensus 143 ~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 143 EITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 3222222 122334566666666666665443 2244556666666666666544 221111222222211 11111
Q ss_pred c------------cccccccchhhcc----CCCCCcccCcccccc---cCCCCCCCCCCcceEEEEeccCccccCCcccc
Q 038779 165 D------------LYGIELNLEWDLG----AGAAGTYDNSNLEMY---LSNGAHGPPGQHVEVEFVTKNRNELYNGSNLD 225 (420)
Q Consensus 165 ~------------l~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (420)
. +..+..+...... ......+....+... ........+..... ............+..+.
T Consensus 219 ~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~-~~~~~~~i~~~~F~~~~ 297 (394)
T 4fs7_A 219 LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKK-VIYGSVIVPEKTFYGCS 297 (394)
T ss_dssp CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCE-EEECSSEECTTTTTTCT
T ss_pred ceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccce-eccCceeeccccccccc
Confidence 0 0000000000000 000000000000000 00000000000000 11111111222233456
Q ss_pred CCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcc
Q 038779 226 YMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVS 305 (420)
Q Consensus 226 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 305 (420)
+|+.+.+..+ ++.+....|.++.+|+.+++..+ ++.....+|.++.+|+.+++..| ++.+...+|.++++|+.+++.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 6777776544 55455566777777777777644 55455666777777777777666 655666677777777777775
Q ss_pred cC
Q 038779 306 YN 307 (420)
Q Consensus 306 ~N 307 (420)
.+
T Consensus 375 ~~ 376 (394)
T 4fs7_A 375 KR 376 (394)
T ss_dssp GG
T ss_pred CC
Confidence 43
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.43 E-value=3.8e-13 Score=125.82 Aligned_cols=104 Identities=23% Similarity=0.268 Sum_probs=78.0
Q ss_pred CEEEcccC-cccccCChhhhcCCCCCEEEccC-CcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecc
Q 038779 17 AVMIMSKN-RLEGNIPPELSKFGGPLILDVSE-NCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLT 93 (420)
Q Consensus 17 ~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 93 (420)
..++++++ +++ .+|. +..+++|+.|+|++ |.++++.+..| ++++|++|+|++|++++..|.+|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677777 777 4666 77778888888885 88887777777 78888888888888877777777778888888888
Q ss_pred cCcccccCCcCCCCCCCCcEEEcccccccc
Q 038779 94 DNHFSGRIPHQINTLSNLRVLLLRGNYLQG 123 (420)
Q Consensus 94 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 123 (420)
+|+|+++.+..|..++ |+.|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888766666666555 7777777777764
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.20 E-value=2.6e-10 Score=108.41 Aligned_cols=239 Identities=8% Similarity=0.010 Sum_probs=132.0
Q ss_pred cCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccCCcCCCC
Q 038779 29 NIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINT 107 (420)
Q Consensus 29 ~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 107 (420)
+...+|.++++|+.+.+.++ +..+...+| ++.+|+.+.+..+ ++.+...+|.++..|+.+.+..+... +. ..+..
T Consensus 153 i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~-~~~~~ 228 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LG-DFALS 228 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-EC-TTTTT
T ss_pred cchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-ee-hhhcc
Confidence 34456777777777777654 333556666 7777777777655 44455666777777777766655432 22 22233
Q ss_pred CCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCcccccccccccCCcccccccccchhhccCCCCCcccC
Q 038779 108 LSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDN 187 (420)
Q Consensus 108 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~ 187 (420)
..+|+.+.+..+ ++.....+|..+..|+.+.+..+... .....+..+..+.........+....+.. ...
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~-----~~~--- 298 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYG-----CSS--- 298 (394)
T ss_dssp TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTT-----CTT---
T ss_pred cCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccc-----ccc---
Confidence 455666665433 23244455666666666666554322 12222222221111000000000000000 000
Q ss_pred cccccccCCCCCCCCCCcceEEEEec-cCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccc
Q 038779 188 SNLEMYLSNGAHGPPGQHVEVEFVTK-NRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIP 266 (420)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 266 (420)
...+..... .......+..+.+|+.+++..+ ++.+....|.++.+|+.+++..+ ++....
T Consensus 299 -----------------L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 299 -----------------LTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp -----------------CCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred -----------------ccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence 000000000 0111223344788999999754 77677789999999999999877 776777
Q ss_pred hhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 038779 267 ESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNF 302 (420)
Q Consensus 267 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 302 (420)
.+|.++++|+.+++..+ ++ .....|.++++|+.+
T Consensus 360 ~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 88999999999999766 33 234568888777654
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.19 E-value=1.2e-09 Score=103.70 Aligned_cols=268 Identities=10% Similarity=0.064 Sum_probs=149.0
Q ss_pred cccCCC-CCCEEEcccCcccccCChhhhcCCCCCEEEccCCc---CcccCCcCc-CCCCCcEEECcCCcccccCChhhhC
Q 038779 9 WIGNFP-VLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENC---LSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFR 83 (420)
Q Consensus 9 ~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~---i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 83 (420)
.|.+++ .|+.+.+..+ ++.+-..+|.++.+|+.+.++.|. ++.+...+| ++.+|+.+.+..+ ++.+...+|.+
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 466664 5888888765 666777888888999999888764 666667777 7888887776544 55566677888
Q ss_pred CCCCcEEecccCcccccCCcCCCCCCCCcEEEcccccccccCCc----------------------cccCCCCCcEEeCc
Q 038779 84 SSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPN----------------------QLCELQKLGIMDLS 141 (420)
Q Consensus 84 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~----------------------~~~~l~~L~~L~L~ 141 (420)
+.+|+.+.+..+. ..+...+|..+.+|+.+.+..+ ++..... +|..+.++......
T Consensus 136 c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 136 CEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp CTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEEC
T ss_pred hccccccccccee-eeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceeccc
Confidence 8888888886543 3355667777777777776543 2223233 34444444444333
Q ss_pred CCccccCCCc-----------------ccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCC
Q 038779 142 HNRFNGSIPS-----------------CLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQ 204 (420)
Q Consensus 142 ~N~l~~~~p~-----------------~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (420)
.+.... ... ....+....+. +.+..+....+... ..+....+...
T Consensus 214 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c-----~~L~~i~lp~~----------- 275 (394)
T 4gt6_A 214 SESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSC-----AYLASVKMPDS----------- 275 (394)
T ss_dssp CSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTC-----SSCCEEECCTT-----------
T ss_pred cccccc-ccceeecccccccccccccccccccceEEcC-CcceEcccceeeec-----ccccEEecccc-----------
Confidence 222110 000 00111122211 11111111111100 00000000000
Q ss_pred cceEEEEeccCccccCCccccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCc
Q 038779 205 HVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNR 284 (420)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 284 (420)
........+..+..|+.+.+. +.++......|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+
T Consensus 276 --------~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s- 344 (394)
T 4gt6_A 276 --------VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS- 344 (394)
T ss_dssp --------CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-
T ss_pred --------cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-
Confidence 000011122335667777775 3455455667777777888877654 55455667777778888777554
Q ss_pred CcccCCccccCCCCCCEEEcccCcC
Q 038779 285 LRGRVSPRLTELNFLSNFNVSYNNL 309 (420)
Q Consensus 285 l~~~~~~~~~~l~~L~~L~L~~N~l 309 (420)
++.+...+|.++++|+.+++.++..
T Consensus 345 v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 345 VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred cCEEhHhHhhCCCCCCEEEECCcee
Confidence 5555666777777788877777643
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.15 E-value=3e-09 Score=101.05 Aligned_cols=296 Identities=10% Similarity=0.072 Sum_probs=182.6
Q ss_pred ccccCChhhhcCC-CCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCc---ccccCChhhhCCCCCcEEecccCccccc
Q 038779 26 LEGNIPPELSKFG-GPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNG---FNGPIPNALFRSSELLTLDLTDNHFSGR 100 (420)
Q Consensus 26 l~~~~p~~~~~l~-~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 100 (420)
++.+-..+|.+++ .|+.+.+..+ ++.+...+| ++.+|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 5556677888875 6999999765 787889999 99999999998764 77677889999999999988765 5557
Q ss_pred CCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccccc--ccccccCCcccccccccchhhcc
Q 038779 101 IPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCLTS--VSFWSQGKNDLYGIELNLEWDLG 178 (420)
Q Consensus 101 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~l~~~~n~l~~~~~~~~~~~~ 178 (420)
...+|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ +...-...+.. ++.+.+..+ +..+....+....
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~ 205 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECF 205 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCT
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCc-ccccccchhhhcc
Confidence 7889999999999999765 44467788999999999998765 22111122221 222221110 0001011111000
Q ss_pred CCC--------CCcccCcccccccCC-----CCCCCCCCcceEEEEe-ccCccccCCccccCCCeEEccCCccccCCCcc
Q 038779 179 AGA--------AGTYDNSNLEMYLSN-----GAHGPPGQHVEVEFVT-KNRNELYNGSNLDYMSGLDLSCNELTGGIPVE 244 (420)
Q Consensus 179 ~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 244 (420)
... ............... ..+... ....+..-. ........+..+..|+.+.+..+..+ .....
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~a 283 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQR-EDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGA 283 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTC-CCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTT
T ss_pred ccceecccccccccccceeeccccccccccccccccc-ccceEEcCCcceEcccceeeecccccEEecccccce-ecCcc
Confidence 000 000000000000000 000000 000000000 00111223445778888988766543 66778
Q ss_pred ccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CCcCCccC
Q 038779 245 IGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KGQFAIFD 323 (420)
Q Consensus 245 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~l~ 323 (420)
|.++++|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+...+|.++++|+.+.+..+ ++..-.. ......++
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 8899999999997 4566566778999999999999865 66677788999999999999755 4322211 23445677
Q ss_pred cccccCCc
Q 038779 324 ESNYRGNI 331 (420)
Q Consensus 324 ~~~~~~n~ 331 (420)
.+.+.++.
T Consensus 361 ~i~~~~~~ 368 (394)
T 4gt6_A 361 NIEYSGSR 368 (394)
T ss_dssp EEEESSCH
T ss_pred EEEECCce
Confidence 77777664
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=6.6e-11 Score=110.44 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=101.3
Q ss_pred CChhhhCCCCCcEEecccCc-ccccCCcCCCCCCCCcEEEcccccccccCCcccc--CCCCCcEEeCcCC--ccccCCCc
Q 038779 77 IPNALFRSSELLTLDLTDNH-FSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLC--ELQKLGIMDLSHN--RFNGSIPS 151 (420)
Q Consensus 77 ~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N--~l~~~~p~ 151 (420)
++..+..+++|+.|+|++|. +. ++. +. +++|++|++..|.++......+. .+++|+.|+|+.+ ...+..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~--l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-- 237 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS--IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-- 237 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB--CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--
T ss_pred HHHHHhcCCCCcEEEEeCCCCce--ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--
Confidence 33455667888888887763 22 222 33 78888888888777643333343 6788888887532 211110
Q ss_pred ccccccccccCCcccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEE
Q 038779 152 CLTSVSFWSQGKNDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLD 231 (420)
Q Consensus 152 ~l~~l~~l~~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 231 (420)
.+..+..+ .....+++|+.|+
T Consensus 238 ~~~~l~~~-----------------------------------------------------------l~~~~~p~Lr~L~ 258 (362)
T 2ra8_A 238 DMNVFRPL-----------------------------------------------------------FSKDRFPNLKWLG 258 (362)
T ss_dssp CGGGTGGG-----------------------------------------------------------SCTTTCTTCCEEE
T ss_pred hHHHHHHH-----------------------------------------------------------HhcCCCCCcCEEe
Confidence 01111100 0001167899999
Q ss_pred ccCCccccCCCccc---cCccCCCEEecCCccccccc----chhhhccCCCCEEeCCCCcCcccCCccccC-CCCCCEEE
Q 038779 232 LSCNELTGGIPVEI---GELQNVRSLNLSHNYLSGSI----PESFFNLKMTESLDLSYNRLRGRVSPRLTE-LNFLSNFN 303 (420)
Q Consensus 232 Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~ 303 (420)
|++|.+.+..+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++...-..+.. + ...++
T Consensus 259 L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~ 336 (362)
T 2ra8_A 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKID 336 (362)
T ss_dssp EESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEE
T ss_pred CCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEE
Confidence 98888764333222 24788999999999887643 334466789999999999887654444443 2 35678
Q ss_pred cccCc
Q 038779 304 VSYNN 308 (420)
Q Consensus 304 L~~N~ 308 (420)
++.++
T Consensus 337 ~~~~~ 341 (362)
T 2ra8_A 337 VSDSQ 341 (362)
T ss_dssp CCSBC
T ss_pred ecCCc
Confidence 88876
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=5.6e-11 Score=110.93 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=112.8
Q ss_pred hhhhcCCCCCEEEccCCcCc---------ccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccCcccccC
Q 038779 32 PELSKFGGPLILDVSENCLS---------GNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDNHFSGRI 101 (420)
Q Consensus 32 ~~~~~l~~L~~L~Ls~n~i~---------~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 101 (420)
.+...+++|+.|.+..+... +.+...+ .+|+|+.|+|++|.-. .++. + .+++|+.|+|..+.+....
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence 34556677777777654321 1122223 6778888888777311 2222 3 3678888888877765332
Q ss_pred CcCC--CCCCCCcEEEccc--cccccc-----CCccc--cCCCCCcEEeCcCCccccCCCcccccccccccCCccccccc
Q 038779 102 PHQI--NTLSNLRVLLLRG--NYLQGP-----IPNQL--CELQKLGIMDLSHNRFNGSIPSCLTSVSFWSQGKNDLYGIE 170 (420)
Q Consensus 102 p~~~--~~l~~L~~L~L~~--N~l~~~-----~~~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~l~~~~n~l~~~~ 170 (420)
...+ ..+++|++|+|+. |...+. +...+ ..+++|++|+|++|.+....+..+...
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-------------- 275 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-------------- 275 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC--------------
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC--------------
Confidence 2223 2678888888753 221111 11122 257899999999988864332222110
Q ss_pred ccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEeccCccccCCccccCCCeEEccCCccccC----CCcccc
Q 038779 171 LNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTKNRNELYNGSNLDYMSGLDLSCNELTGG----IPVEIG 246 (420)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~ 246 (420)
..+++|++|+|+.|.+++. ++..+.
T Consensus 276 ---------------------------------------------------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 276 ---------------------------------------------------DILPQLETMDISAGVLTDEGARLLLDHVD 304 (362)
T ss_dssp ---------------------------------------------------SSGGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred ---------------------------------------------------ccCCCCCEEECCCCCCChHHHHHHHhhcc
Confidence 1168899999999998864 233345
Q ss_pred CccCCCEEecCCcccccccchhhhccCCCCEEeCCCCc
Q 038779 247 ELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNR 284 (420)
Q Consensus 247 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 284 (420)
.+++|+.|+|++|.++......+...- ...+++++++
T Consensus 305 ~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred cCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 678999999999998865555555411 4678999887
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.89 E-value=1.2e-07 Score=89.37 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=53.2
Q ss_pred ccCCCeEEccCCccccCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 038779 224 LDYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFN 303 (420)
Q Consensus 224 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 303 (420)
..+|+.+.+..+ +.......|.++.+|+.+.+.++.++.....+|.++.+|+.+.+.++ ++.+...+|.++++|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 456666666543 44345556777777777777777776555667777777777777654 5555566777777777766
Q ss_pred ccc
Q 038779 304 VSY 306 (420)
Q Consensus 304 L~~ 306 (420)
+..
T Consensus 340 ip~ 342 (379)
T 4h09_A 340 YPK 342 (379)
T ss_dssp CCT
T ss_pred ECC
Confidence 643
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.78 E-value=9.8e-07 Score=83.10 Aligned_cols=292 Identities=6% Similarity=-0.044 Sum_probs=168.0
Q ss_pred ccCCCCCCEEEcccCcccccCChhhhcCCCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCc
Q 038779 10 IGNFPVLAVMIMSKNRLEGNIPPELSKFGGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELL 88 (420)
Q Consensus 10 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 88 (420)
+....+|+.+.+... ++.+-..+|.++.+|+.++|..+ ++.+...+| ++ +|+.+.+..+ ++.+...+|... +|+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 444567888888654 56566778888889999988754 676777788 55 6777776543 554666667664 788
Q ss_pred EEecccCcccccCCcCCCCCCCCcEEEcccccccccCCccccCCCCCcEEeCcCCccccCCCccc-cc-ccccc---cCC
Q 038779 89 TLDLTDNHFSGRIPHQINTLSNLRVLLLRGNYLQGPIPNQLCELQKLGIMDLSHNRFNGSIPSCL-TS-VSFWS---QGK 163 (420)
Q Consensus 89 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~-l~~l~---~~~ 163 (420)
.+.+..+- +.+...+|.+. +|+.+.+..+ ++.....+|..+.+++...+..+.......... .+ ..... ...
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 88887653 33556667654 5666665543 444566778888888888776544321100000 00 00000 000
Q ss_pred cccccccccchhhccCCCCCcccCcccccccCCCCCCCCCCcceEEEEec-cCccccCCccccCCCeEEccCCccccCCC
Q 038779 164 NDLYGIELNLEWDLGAGAAGTYDNSNLEMYLSNGAHGPPGQHVEVEFVTK-NRNELYNGSNLDYMSGLDLSCNELTGGIP 242 (420)
Q Consensus 164 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 242 (420)
..+.....+... ...... .+ ........+..... .......+.....|+.+.+..+ ++....
T Consensus 194 ~~~~~~~~~~~~-------~~i~~~--------~f-~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 194 KTGTEFTIPSTV-------KTVTAY--------GF-SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp CCCSEEECCTTC-------CEECTT--------TT-TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred ccccccccccce-------eEEeec--------cc-ccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCc
Confidence 000000000000 000000 00 00000000000000 0001112233678888888765 565667
Q ss_pred ccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCCC-CCcCCc
Q 038779 243 VEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVPD-KGQFAI 321 (420)
Q Consensus 243 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~ 321 (420)
..|.+..+|+.+.+..+ +.......|.++++|+.+.+.++.++.+...+|.++.+|+.+++..+ ++..-.. ......
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 78889999999999765 65466678999999999999999998788889999999999999755 4332221 123344
Q ss_pred cCccccc
Q 038779 322 FDESNYR 328 (420)
Q Consensus 322 l~~~~~~ 328 (420)
++.+.+.
T Consensus 335 L~~i~ip 341 (379)
T 4h09_A 335 LSTISYP 341 (379)
T ss_dssp CCCCCCC
T ss_pred CCEEEEC
Confidence 5555543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=2.2e-09 Score=90.49 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=78.6
Q ss_pred ChhhhcCCCCCEEEccCC-cCccc----CCcCc-CCCCCcEEECcCCccccc----CChhhhCCCCCcEEecccCccccc
Q 038779 31 PPELSKFGGPLILDVSEN-CLSGN----MPSSL-NLSSLKHLYLRKNGFNGP----IPNALFRSSELLTLDLTDNHFSGR 100 (420)
Q Consensus 31 p~~~~~l~~L~~L~Ls~n-~i~~~----~~~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~ 100 (420)
...+...++|+.|+|++| .+... +...+ ..+.|++|+|++|.+... +...+...+.|++|+|++|.|+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556677777777777 66532 22223 456788888888877542 334455567888888888888743
Q ss_pred ----CCcCCCCCCCCcEEEc--cccccccc----CCccccCCCCCcEEeCcCCccc
Q 038779 101 ----IPHQINTLSNLRVLLL--RGNYLQGP----IPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 101 ----~p~~~~~l~~L~~L~L--~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
+..++...++|++|+| ++|.++.. +...+...++|+.|+|++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666778888888 77888743 2344556688999999998875
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=3.8e-09 Score=88.98 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=85.6
Q ss_pred cccCCCCCCEEEcccC-ccccc----CChhhhcCCCCCEEEccCCcCcccC----CcCc-CCCCCcEEECcCCccccc--
Q 038779 9 WIGNFPVLAVMIMSKN-RLEGN----IPPELSKFGGPLILDVSENCLSGNM----PSSL-NLSSLKHLYLRKNGFNGP-- 76 (420)
Q Consensus 9 ~~~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~i~~~~----~~~~-~l~~L~~L~L~~n~l~~~-- 76 (420)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.|.... ...+ ..+.|++|+|++|.++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3566788999999999 88643 3455566789999999999987432 2333 567899999999998753
Q ss_pred --CChhhhCCCCCcEEec--ccCccccc----CCcCCCCCCCCcEEEccccccc
Q 038779 77 --IPNALFRSSELLTLDL--TDNHFSGR----IPHQINTLSNLRVLLLRGNYLQ 122 (420)
Q Consensus 77 --~~~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 122 (420)
+..++...+.|++|+| ++|.|+.. +...+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3556677788999999 88998743 2334555688999999999876
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.63 E-value=3.5e-09 Score=93.85 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=54.7
Q ss_pred CCCCCcEEECcCCcccc--cCChhhhCCCCCcEEecccCcccccC-CcCCCCCCCCcEEEcccccccccCC-------cc
Q 038779 59 NLSSLKHLYLRKNGFNG--PIPNALFRSSELLTLDLTDNHFSGRI-PHQINTLSNLRVLLLRGNYLQGPIP-------NQ 128 (420)
Q Consensus 59 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~-------~~ 128 (420)
.+++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++.. -..+..+ +|++|+|++|.+.+.+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 46777777777777775 33456667778888888888877541 1223333 78888888888876554 24
Q ss_pred ccCCCCCcEEe
Q 038779 129 LCELQKLGIMD 139 (420)
Q Consensus 129 ~~~l~~L~~L~ 139 (420)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67788888886
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.53 E-value=1.1e-07 Score=84.21 Aligned_cols=103 Identities=22% Similarity=0.159 Sum_probs=74.7
Q ss_pred cCCCCCCE--EEcccCccc---ccCChhhhcCCCCCEEEccCCcCccc--CCcCc-CCCCCcEEECcCCcccccCChhhh
Q 038779 11 GNFPVLAV--MIMSKNRLE---GNIPPELSKFGGPLILDVSENCLSGN--MPSSL-NLSSLKHLYLRKNGFNGPIPNALF 82 (420)
Q Consensus 11 ~~l~~L~~--L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~n~i~~~--~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~ 82 (420)
...+.|+. ++++.|+.. +.++-...++++|+.|+|++|+|+++ +|..+ .+++|+.|+|++|++++. ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh
Confidence 33444554 677888433 22233335789999999999999974 45666 899999999999999864 3344
Q ss_pred CCC--CCcEEecccCcccccCCc-------CCCCCCCCcEEE
Q 038779 83 RSS--ELLTLDLTDNHFSGRIPH-------QINTLSNLRVLL 115 (420)
Q Consensus 83 ~l~--~L~~L~L~~N~l~~~~p~-------~~~~l~~L~~L~ 115 (420)
.+. +|++|+|++|.+.+..|. .+..+++|+.||
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 444 899999999999876552 366789999886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=9.9e-07 Score=72.53 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=47.2
Q ss_pred CCCCEEEccCCcCcccCCcCc-CCCCCcEEECcCCc-ccccCChhhhCC----CCCcEEecccCc-ccccCCcCCCCCCC
Q 038779 38 GGPLILDVSENCLSGNMPSSL-NLSSLKHLYLRKNG-FNGPIPNALFRS----SELLTLDLTDNH-FSGRIPHQINTLSN 110 (420)
Q Consensus 38 ~~L~~L~Ls~n~i~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~ 110 (420)
.+|+.||++++.|+..--..+ ++++|++|+|++|. ++...-..+..+ ++|++|+|+++. |+..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666554333334 66666666666664 443322334433 257777777753 65433334556777
Q ss_pred CcEEEccccc
Q 038779 111 LRVLLLRGNY 120 (420)
Q Consensus 111 L~~L~L~~N~ 120 (420)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=7.2e-07 Score=73.36 Aligned_cols=84 Identities=13% Similarity=0.040 Sum_probs=69.8
Q ss_pred cCCCeEEccCCccccCCCccccCccCCCEEecCCcc-cccccchhhhcc----CCCCEEeCCCC-cCcccCCccccCCCC
Q 038779 225 DYMSGLDLSCNELTGGIPVEIGELQNVRSLNLSHNY-LSGSIPESFFNL----KMTESLDLSYN-RLRGRVSPRLTELNF 298 (420)
Q Consensus 225 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 298 (420)
..|+.||++++.++..--..+.++++|++|+|++|. ++..--..+..+ ++|++|+|++| +|++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999987766778899999999999995 776555666664 47999999998 488765566788999
Q ss_pred CCEEEcccCc
Q 038779 299 LSNFNVSYNN 308 (420)
Q Consensus 299 L~~L~L~~N~ 308 (420)
|++|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999875
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.02 E-value=5.2e-06 Score=65.07 Aligned_cols=60 Identities=22% Similarity=0.141 Sum_probs=43.4
Q ss_pred EEecCCcccc-cccchhhhccCCCCEEeCCCCcCcccCCccccCCCCCCEEEcccCcCcccCC
Q 038779 253 SLNLSHNYLS-GSIPESFFNLKMTESLDLSYNRLRGRVSPRLTELNFLSNFNVSYNNLSGLVP 314 (420)
Q Consensus 253 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 314 (420)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|++|+|++|++.|.|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4555666554 23343222 457888888888887777788888899999999999999884
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=2.2e-05 Score=65.78 Aligned_cols=114 Identities=10% Similarity=0.079 Sum_probs=73.0
Q ss_pred hhhcCCCCCEEEccCC-cCccc----CCcCc-CCCCCcEEECcCCccccc----CChhhhCCCCCcEEecccCccccc--
Q 038779 33 ELSKFGGPLILDVSEN-CLSGN----MPSSL-NLSSLKHLYLRKNGFNGP----IPNALFRSSELLTLDLTDNHFSGR-- 100 (420)
Q Consensus 33 ~~~~l~~L~~L~Ls~n-~i~~~----~~~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~-- 100 (420)
.+.+-+.|+.|+|++| +|... +..++ .-+.|+.|+|++|.+... +.+++..-..|++|+|++|.|+..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3345567888888775 66432 22333 456788888888887643 334444567888888888888732
Q ss_pred --CCcCCCCCCCCcEEEccccc---cccc----CCccccCCCCCcEEeCcCCccc
Q 038779 101 --IPHQINTLSNLRVLLLRGNY---LQGP----IPNQLCELQKLGIMDLSHNRFN 146 (420)
Q Consensus 101 --~p~~~~~l~~L~~L~L~~N~---l~~~----~~~~~~~l~~L~~L~L~~N~l~ 146 (420)
+..++..-+.|++|+|++|. +... +...+..-+.|+.|+++.|.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 23455666779999997653 3321 2344556678999999877653
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=5.1e-05 Score=63.53 Aligned_cols=111 Identities=8% Similarity=0.075 Sum_probs=58.6
Q ss_pred cCCCCCCEEEcccC-ccccc----CChhhhcCCCCCEEEccCCcCcccCCcC----c-CCCCCcEEECcCCccccc----
Q 038779 11 GNFPVLAVMIMSKN-RLEGN----IPPELSKFGGPLILDVSENCLSGNMPSS----L-NLSSLKHLYLRKNGFNGP---- 76 (420)
Q Consensus 11 ~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~i~~~~~~~----~-~l~~L~~L~L~~n~l~~~---- 76 (420)
.+-+.|+.|+|++| .|... +.+++..-+.|+.|+|++|+|....-.. + .-+.|++|+|++|.|+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456677777664 55432 2334455566777777777665332222 2 345677777777776532
Q ss_pred CChhhhCCCCCcEEecccC---ccccc----CCcCCCCCCCCcEEEcccccc
Q 038779 77 IPNALFRSSELLTLDLTDN---HFSGR----IPHQINTLSNLRVLLLRGNYL 121 (420)
Q Consensus 77 ~~~~~~~l~~L~~L~L~~N---~l~~~----~p~~~~~l~~L~~L~L~~N~l 121 (420)
+.+++..-..|++|+|++| .+... +..++..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2223344456777777654 22211 122334445666666665544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.22 E-value=0.00061 Score=53.11 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=46.9
Q ss_pred CeEEccCCccc-cCCCccccCccCCCEEecCCcccccccchhhhccCCCCEEeCCCCcCc
Q 038779 228 SGLDLSCNELT-GGIPVEIGELQNVRSLNLSHNYLSGSIPESFFNLKMTESLDLSYNRLR 286 (420)
Q Consensus 228 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 286 (420)
..++.++++++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888999886 3555443 257999999999999777888999999999999999775
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=86.23 E-value=0.8 Score=27.43 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=12.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhccccc
Q 038779 369 FNWSFAASYVTFILGLLAILWINSCWR 395 (420)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (420)
++..++.++++++++++.++++.++++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 344455555555444444444444443
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=85.91 E-value=0.79 Score=27.39 Aligned_cols=28 Identities=4% Similarity=-0.139 Sum_probs=12.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhccccc
Q 038779 368 SFNWSFAASYVTFILGLLAILWINSCWR 395 (420)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (420)
.+...++.+++++++++..++++.++++
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 3444455545554444444444444433
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.67 E-value=5.2 Score=28.85 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=23.8
Q ss_pred cccccCChhhhCCCCCcEEecccCcccccCCcCCCCCCCCcEEEccc
Q 038779 72 GFNGPIPNALFRSSELLTLDLTDNHFSGRIPHQINTLSNLRVLLLRG 118 (420)
Q Consensus 72 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 118 (420)
.++.+...+|.++.+|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444555555555555555543 2334455555566665555543
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.09 E-value=9.6 Score=27.42 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=27.4
Q ss_pred cCcccCCcCc-CCCCCcEEECcCCcccccCChhhhCCCCCcEEecccC
Q 038779 49 CLSGNMPSSL-NLSSLKHLYLRKNGFNGPIPNALFRSSELLTLDLTDN 95 (420)
Q Consensus 49 ~i~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 95 (420)
.++.+...+| ++..|+.+.|-.+ ++.+...+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3444555566 6666666666543 44455666666777776666553
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=65.65 E-value=6.1 Score=22.75 Aligned_cols=17 Identities=18% Similarity=-0.050 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHHHHHH
Q 038779 371 WSFAASYVTFILGLLAI 387 (420)
Q Consensus 371 ~~~~~~~~~~~~~~~~~ 387 (420)
..+++++++.+.+++.+
T Consensus 14 AGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 33444444433333333
No 170
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=62.23 E-value=6.3 Score=25.55 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHhhhcccccce
Q 038779 372 SFAASYVTFILGLLAILWINSCWRRL 397 (420)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (420)
+++.++.+++++.+++++..++|+++
T Consensus 13 vlGg~~~lll~~glcI~ccvkcrhRr 38 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRSRHRR 38 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444555555555455555444
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=37.38 E-value=28 Score=19.18 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHhhhcc
Q 038779 373 FAASYVTFILGLLAILWINS 392 (420)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~ 392 (420)
+++++++++.++..-+.+++
T Consensus 12 ~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEc
Confidence 34444444444434344433
No 172
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=21.95 E-value=1e+02 Score=16.89 Aligned_cols=18 Identities=0% Similarity=0.111 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 038779 373 FAASYVTFILGLLAILWI 390 (420)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~ 390 (420)
++++-++..+.+...+|+
T Consensus 12 IVvgdi~~t~~i~~~vy~ 29 (33)
T 2l34_A 12 IVVGDLVLTVLIALAVYF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHHHhh
Confidence 334433333333333333
Done!