Query 038780
Match_columns 694
No_of_seqs 280 out of 1704
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:12:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 1E-138 3E-143 1216.1 73.9 678 2-686 103-806 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 6E-114 1E-118 993.1 49.1 670 2-677 83-767 (769)
3 PRK10669 putative cation:proto 100.0 8.2E-41 1.8E-45 381.5 34.9 325 2-337 56-389 (558)
4 PRK03562 glutathione-regulated 100.0 1.8E-40 3.9E-45 379.9 35.2 318 2-334 55-378 (621)
5 COG0475 KefB Kef-type K+ trans 100.0 6.9E-40 1.5E-44 355.9 35.4 329 1-339 56-387 (397)
6 PRK03659 glutathione-regulated 100.0 2E-39 4.4E-44 370.8 36.9 321 2-338 55-378 (601)
7 PRK05326 potassium/proton anti 100.0 2.8E-32 6.1E-37 311.1 27.7 326 2-338 58-389 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 3.6E-34 7.8E-39 313.0 -4.9 327 2-336 47-378 (380)
9 TIGR00932 2a37 transporter, mo 100.0 8.5E-30 1.9E-34 265.6 26.6 230 2-241 42-273 (273)
10 COG4651 RosB Kef-type K+ trans 100.0 7.1E-28 1.5E-32 237.4 21.7 320 4-336 58-387 (408)
11 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 5.7E-20 1.2E-24 207.4 31.7 320 5-336 50-408 (525)
12 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 1.3E-19 2.7E-24 205.4 30.7 292 6-308 74-386 (810)
13 COG0025 NhaP NhaP-type Na+/H+ 99.8 2.6E-16 5.7E-21 172.9 32.0 323 4-337 60-407 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.8 1.7E-16 3.6E-21 179.2 31.1 325 6-337 68-417 (559)
15 PRK14853 nhaA pH-dependent sod 99.8 3.4E-16 7.3E-21 167.6 31.2 296 8-337 68-396 (423)
16 COG3263 NhaP-type Na+/H+ and K 99.7 4.7E-16 1E-20 161.5 20.8 320 4-336 61-385 (574)
17 PRK11175 universal stress prot 99.7 2.2E-16 4.8E-21 167.4 18.9 272 360-674 5-300 (305)
18 TIGR00773 NhaA Na+/H+ antiport 99.6 5.9E-14 1.3E-18 147.6 20.0 265 8-305 58-344 (373)
19 cd01988 Na_H_Antiporter_C The 99.5 7E-13 1.5E-17 121.9 12.5 131 360-510 1-131 (132)
20 PRK14856 nhaA pH-dependent sod 99.2 6.1E-10 1.3E-14 119.3 21.4 294 6-335 72-430 (438)
21 KOG4505 Na+/H+ antiporter [Ino 99.2 6.2E-10 1.3E-14 112.5 20.1 292 5-305 73-383 (467)
22 PRK09560 nhaA pH-dependent sod 99.2 7.6E-10 1.7E-14 116.8 21.7 263 10-305 67-353 (389)
23 KOG1965 Sodium/hydrogen exchan 99.2 2.5E-10 5.5E-15 124.7 15.8 317 14-337 109-455 (575)
24 PRK09561 nhaA pH-dependent sod 99.2 2.9E-09 6.3E-14 112.3 21.4 263 10-305 67-351 (388)
25 PRK14855 nhaA pH-dependent sod 99.2 2.6E-09 5.6E-14 114.0 20.2 260 8-306 69-384 (423)
26 PRK14854 nhaA pH-dependent sod 99.1 8.2E-09 1.8E-13 108.5 22.8 263 11-306 65-349 (383)
27 PRK15005 universal stress prot 99.1 6E-10 1.3E-14 104.2 11.8 137 360-510 4-143 (144)
28 PRK15456 universal stress prot 99.1 4.6E-10 1E-14 105.0 9.4 135 360-510 4-141 (142)
29 cd01989 STK_N The N-terminal d 99.0 2.9E-09 6.4E-14 99.9 12.9 141 360-511 1-144 (146)
30 cd01987 USP_OKCHK USP domain i 99.0 2.7E-09 5.9E-14 97.1 10.4 122 360-510 1-123 (124)
31 PRK09982 universal stress prot 99.0 2.1E-09 4.5E-14 100.6 9.3 133 360-510 5-137 (142)
32 PRK15118 universal stress glob 99.0 3.6E-09 7.9E-14 99.1 10.6 135 359-511 4-138 (144)
33 PF06965 Na_H_antiport_1: Na+/ 98.9 1.2E-09 2.7E-14 115.0 6.8 266 8-306 61-352 (378)
34 COG3004 NhaA Na+/H+ antiporter 98.9 3.5E-07 7.6E-12 92.8 21.1 260 12-307 72-356 (390)
35 PF00582 Usp: Universal stress 98.9 8.7E-09 1.9E-13 94.5 8.8 134 359-510 3-139 (140)
36 PRK10116 universal stress prot 98.8 3.2E-08 7E-13 92.3 9.2 136 359-512 4-139 (142)
37 cd00293 USP_Like Usp: Universa 98.7 1.8E-07 3.9E-12 84.7 11.6 129 360-509 1-129 (130)
38 PRK11175 universal stress prot 98.7 9.4E-08 2E-12 101.3 10.1 143 359-514 153-302 (305)
39 cd01989 STK_N The N-terminal d 98.4 3.3E-06 7.2E-11 79.0 11.6 127 530-674 1-145 (146)
40 cd01988 Na_H_Antiporter_C The 98.3 6.9E-06 1.5E-10 75.1 12.0 126 530-673 1-132 (132)
41 PRK09982 universal stress prot 98.2 4E-06 8.6E-11 78.4 8.7 122 528-673 3-138 (142)
42 PRK12460 2-keto-3-deoxyglucona 98.2 0.00022 4.9E-09 73.7 20.3 254 12-340 52-308 (312)
43 PF00582 Usp: Universal stress 98.1 1.4E-05 3E-10 73.0 10.1 125 529-672 3-139 (140)
44 PRK15005 universal stress prot 98.1 2.4E-05 5.1E-10 73.0 11.3 125 529-673 3-144 (144)
45 COG0589 UspA Universal stress 98.1 6.2E-05 1.3E-09 70.4 13.9 140 359-511 6-151 (154)
46 KOG1966 Sodium/hydrogen exchan 98.0 2.7E-06 5.7E-11 93.3 3.1 315 14-336 109-448 (670)
47 cd01987 USP_OKCHK USP domain i 98.0 2E-05 4.3E-10 71.5 8.0 120 530-672 1-123 (124)
48 PRK15118 universal stress glob 98.0 4.6E-05 1E-09 71.2 9.9 123 528-674 3-139 (144)
49 PRK10116 universal stress prot 97.9 4.5E-05 9.7E-10 71.0 9.5 123 528-673 3-138 (142)
50 cd00293 USP_Like Usp: Universa 97.9 0.00014 3.1E-09 65.5 10.9 127 530-672 1-130 (130)
51 PRK15456 universal stress prot 97.8 0.00013 2.8E-09 67.9 10.8 124 529-673 3-142 (142)
52 PF03812 KdgT: 2-keto-3-deoxyg 97.8 0.0018 4E-08 66.7 19.6 258 12-338 52-312 (314)
53 PRK12652 putative monovalent c 97.5 0.00047 1E-08 74.0 10.7 131 359-506 6-145 (357)
54 TIGR00793 kdgT 2-keto-3-deoxyg 97.5 0.0052 1.1E-07 63.0 16.2 255 12-338 52-312 (314)
55 PRK12652 putative monovalent c 97.3 0.0019 4.1E-08 69.4 12.1 125 528-664 5-145 (357)
56 COG0385 Predicted Na+-dependen 97.2 0.18 3.9E-06 52.9 25.0 144 7-163 40-191 (319)
57 PRK05274 2-keto-3-deoxyglucona 96.9 0.038 8.3E-07 58.6 17.1 136 198-340 178-316 (326)
58 PF05145 AmoA: Putative ammoni 96.4 0.88 1.9E-05 48.5 23.0 155 174-337 157-315 (318)
59 COG0589 UspA Universal stress 96.3 0.045 9.7E-07 50.8 11.1 130 528-675 5-153 (154)
60 PF05684 DUF819: Protein of un 96.1 2.8 6E-05 45.8 27.7 94 211-309 257-350 (378)
61 TIGR00932 2a37 transporter, mo 96.1 0.085 1.8E-06 54.9 13.3 143 180-327 3-147 (273)
62 PRK03562 glutathione-regulated 96.0 0.095 2.1E-06 61.1 14.4 116 174-292 10-126 (621)
63 PF03601 Cons_hypoth698: Conse 95.9 0.16 3.6E-06 53.5 14.3 164 177-342 6-176 (305)
64 PRK10490 sensor protein KdpD; 95.9 0.053 1.1E-06 66.1 12.2 125 356-511 248-373 (895)
65 TIGR00783 ccs citrate carrier 95.9 0.26 5.6E-06 52.4 15.6 119 192-310 203-327 (347)
66 COG3180 AbrB Putative ammonia 95.8 1.9 4E-05 46.0 21.3 157 174-339 190-350 (352)
67 PF13593 DUF4137: SBF-like CPA 95.8 2.5 5.5E-05 44.9 22.9 31 4-34 30-60 (313)
68 COG2855 Predicted membrane pro 95.7 0.11 2.3E-06 54.7 11.7 116 187-304 31-146 (334)
69 PRK10669 putative cation:proto 95.7 0.17 3.6E-06 58.5 14.7 134 176-314 13-147 (558)
70 PF03390 2HCT: 2-hydroxycarbox 95.7 2.1 4.6E-05 46.6 21.9 256 20-310 109-394 (414)
71 PF01758 SBF: Sodium Bile acid 95.7 0.51 1.1E-05 46.1 16.0 107 9-124 2-111 (187)
72 COG0798 ACR3 Arsenite efflux p 95.6 3.1 6.7E-05 43.9 21.6 149 7-163 53-202 (342)
73 TIGR00841 bass bile acid trans 95.5 3.8 8.3E-05 43.0 23.8 105 6-122 9-118 (286)
74 PRK03659 glutathione-regulated 95.4 0.23 5E-06 57.8 14.4 115 174-291 10-125 (601)
75 PRK05326 potassium/proton anti 95.4 0.13 2.9E-06 59.3 12.3 118 176-295 13-133 (562)
76 COG0475 KefB Kef-type K+ trans 95.3 0.32 7E-06 53.5 14.5 143 174-323 11-159 (397)
77 TIGR00832 acr3 arsenical-resis 94.9 2.9 6.3E-05 44.8 19.9 101 9-118 47-150 (328)
78 TIGR00698 conserved hypothetic 94.6 0.76 1.7E-05 49.1 14.3 157 177-335 10-175 (335)
79 TIGR00844 c_cpa1 na(+)/h(+) an 94.4 0.48 1E-05 55.7 13.2 69 225-295 75-146 (810)
80 COG3493 CitS Na+/citrate sympo 94.0 10 0.00022 40.5 20.8 259 20-310 126-413 (438)
81 PF03616 Glt_symporter: Sodium 93.9 8.6 0.00019 41.9 21.0 88 193-287 247-342 (368)
82 TIGR03082 Gneg_AbrB_dup membra 93.7 0.74 1.6E-05 43.6 10.9 119 178-303 4-126 (156)
83 PF03956 DUF340: Membrane prot 93.7 0.94 2E-05 44.4 11.8 106 4-120 23-134 (191)
84 TIGR00831 a_cpa1 Na+/H+ antipo 93.3 0.47 1E-05 54.3 10.6 118 176-297 5-124 (525)
85 PLN03159 cation/H(+) antiporte 93.3 1.2 2.6E-05 53.8 14.4 39 527-566 457-498 (832)
86 COG2205 KdpD Osmosensitive K+ 93.3 0.49 1.1E-05 55.0 10.3 126 356-510 246-372 (890)
87 cd01984 AANH_like Adenine nucl 92.7 0.32 7E-06 40.7 6.1 50 454-508 35-84 (86)
88 TIGR00698 conserved hypothetic 92.6 17 0.00037 39.0 20.3 43 6-52 67-110 (335)
89 PRK10490 sensor protein KdpD; 91.9 0.45 9.7E-06 58.1 8.4 125 527-673 249-373 (895)
90 COG0786 GltS Na+/glutamate sym 91.0 26 0.00056 37.9 20.9 121 182-302 232-360 (404)
91 TIGR00930 2a30 K-Cl cotranspor 90.6 52 0.0011 40.6 45.8 132 355-511 572-708 (953)
92 PF03616 Glt_symporter: Sodium 90.2 2.2 4.8E-05 46.4 10.9 113 226-338 67-185 (368)
93 COG1346 LrgB Putative effector 89.4 16 0.00035 36.4 15.0 110 214-336 62-172 (230)
94 PF03977 OAD_beta: Na+-transpo 89.3 0.92 2E-05 47.4 6.6 107 224-339 67-177 (360)
95 PF06826 Asp-Al_Ex: Predicted 89.0 7.9 0.00017 37.1 12.4 81 2-90 51-136 (169)
96 TIGR03136 malonate_biotin Na+- 87.9 4.1 8.8E-05 43.3 10.3 130 222-365 101-237 (399)
97 TIGR00210 gltS sodium--glutama 87.5 50 0.0011 36.4 19.0 89 192-287 244-340 (398)
98 PRK04288 antiholin-like protei 87.3 17 0.00038 36.6 14.0 108 215-335 66-174 (232)
99 PF03601 Cons_hypoth698: Conse 86.2 15 0.00031 39.0 13.6 98 5-117 60-162 (305)
100 COG2205 KdpD Osmosensitive K+ 86.0 2.7 5.9E-05 49.2 8.5 125 528-673 248-373 (890)
101 TIGR00210 gltS sodium--glutama 85.5 42 0.00092 36.9 17.1 113 226-338 67-185 (398)
102 PF03956 DUF340: Membrane prot 84.6 4.5 9.7E-05 39.7 8.2 102 197-301 2-106 (191)
103 COG0025 NhaP NhaP-type Na+/H+ 84.1 13 0.00029 41.3 12.8 123 176-300 13-139 (429)
104 PF00999 Na_H_Exchanger: Sodiu 82.6 0.44 9.5E-06 52.0 0.3 112 179-293 6-123 (380)
105 TIGR00659 conserved hypothetic 81.8 41 0.00088 33.9 13.8 79 253-335 90-168 (226)
106 PRK10711 hypothetical protein; 80.3 35 0.00076 34.4 12.8 79 253-335 91-169 (231)
107 PRK15475 oxaloacetate decarbox 80.2 1.8 4E-05 45.8 3.8 131 223-365 131-270 (433)
108 PRK15476 oxaloacetate decarbox 80.2 1.8 4E-05 45.8 3.8 131 223-365 131-270 (433)
109 PRK15477 oxaloacetate decarbox 80.2 1.8 4E-05 45.8 3.8 131 223-365 131-270 (433)
110 PRK03818 putative transporter; 79.9 20 0.00044 41.2 12.6 79 3-90 59-142 (552)
111 TIGR02432 lysidine_TilS_N tRNA 79.8 10 0.00022 36.8 8.9 37 530-566 1-37 (189)
112 TIGR01625 YidE_YbjL_dupl AspT/ 79.6 16 0.00035 34.4 9.7 81 3-91 52-138 (154)
113 COG0786 GltS Na+/glutamate sym 78.0 3.2 7E-05 44.6 4.9 115 224-338 67-186 (404)
114 PRK05253 sulfate adenylyltrans 77.0 8 0.00017 40.8 7.6 39 530-568 29-67 (301)
115 COG3180 AbrB Putative ammonia 77.0 33 0.00072 36.7 12.0 153 174-337 11-169 (352)
116 PRK12342 hypothetical protein; 76.6 8.2 0.00018 39.6 7.3 96 533-645 29-137 (254)
117 COG1883 OadB Na+-transporting 76.1 2.3 5E-05 43.5 3.0 128 224-365 82-214 (375)
118 COG4651 RosB Kef-type K+ trans 75.7 7.2 0.00016 40.4 6.4 116 174-297 11-132 (408)
119 PF01171 ATP_bind_3: PP-loop f 75.4 22 0.00047 34.4 9.7 57 530-591 1-57 (182)
120 PRK03359 putative electron tra 75.1 21 0.00045 36.7 9.8 84 533-632 30-122 (256)
121 PF03547 Mem_trans: Membrane t 72.7 15 0.00032 40.1 8.7 132 198-336 11-145 (385)
122 TIGR02039 CysD sulfate adenyly 71.7 11 0.00024 39.6 6.9 54 530-590 21-74 (294)
123 TIGR01109 Na_pump_decarbB sodi 71.4 19 0.0004 37.9 8.3 129 223-365 60-199 (354)
124 cd01992 PP-ATPase N-terminal d 71.1 26 0.00056 33.7 9.2 56 530-590 1-56 (185)
125 COG1646 Predicted phosphate-bi 68.5 25 0.00055 35.2 8.2 86 443-543 16-102 (240)
126 PF05145 AmoA: Putative ammoni 68.3 25 0.00054 37.5 8.9 133 196-338 2-137 (318)
127 TIGR03802 Asp_Ala_antiprt aspa 67.8 27 0.00058 40.4 9.7 80 4-91 447-531 (562)
128 COG3263 NhaP-type Na+/H+ and K 66.5 40 0.00087 37.0 9.7 70 227-297 66-136 (574)
129 PF04172 LrgB: LrgB-like famil 66.1 1.1E+02 0.0023 30.7 12.2 79 253-335 80-158 (215)
130 PRK12563 sulfate adenylyltrans 65.6 13 0.00028 39.3 5.9 41 530-570 39-79 (312)
131 PRK12460 2-keto-3-deoxyglucona 65.4 60 0.0013 34.2 10.7 47 9-55 196-243 (312)
132 TIGR03802 Asp_Ala_antiprt aspa 63.7 29 0.00062 40.2 8.9 41 4-44 57-97 (562)
133 TIGR00946 2a69 he Auxin Efflux 62.7 1.1E+02 0.0024 32.4 12.7 113 1-121 207-320 (321)
134 COG2985 Predicted permease [Ge 62.2 20 0.00043 39.8 6.7 78 8-94 62-147 (544)
135 cd01993 Alpha_ANH_like_II This 60.7 67 0.0014 30.6 9.8 38 530-567 1-40 (185)
136 PF01012 ETF: Electron transfe 60.7 32 0.0007 32.5 7.4 81 539-632 15-100 (164)
137 TIGR01625 YidE_YbjL_dupl AspT/ 59.3 21 0.00045 33.7 5.6 87 195-281 23-116 (154)
138 COG0037 MesJ tRNA(Ile)-lysidin 56.9 80 0.0017 32.9 10.3 56 529-591 22-77 (298)
139 PRK04972 putative transporter; 56.2 73 0.0016 36.8 10.5 77 4-89 59-140 (558)
140 KOG2310 DNA repair exonuclease 54.4 25 0.00053 39.5 5.8 57 456-515 41-100 (646)
141 PRK10660 tilS tRNA(Ile)-lysidi 53.0 88 0.0019 35.0 10.2 58 529-591 16-74 (436)
142 COG2086 FixA Electron transfer 49.9 52 0.0011 33.9 7.1 108 534-657 32-148 (260)
143 PRK04125 murein hydrolase regu 49.6 1E+02 0.0022 28.7 8.2 39 229-268 69-109 (141)
144 cd01713 PAPS_reductase This do 49.0 77 0.0017 29.4 7.9 36 530-566 1-36 (173)
145 cd01984 AANH_like Adenine nucl 47.4 23 0.0005 29.3 3.5 34 531-565 1-34 (86)
146 TIGR01109 Na_pump_decarbB sodi 47.3 1.8E+02 0.0039 30.9 10.4 99 144-248 158-266 (354)
147 TIGR00840 b_cpa1 sodium/hydrog 46.8 4.4E+02 0.0095 30.5 14.8 74 226-300 70-152 (559)
148 PF05684 DUF819: Protein of un 46.0 1.1E+02 0.0025 33.3 9.5 97 220-320 52-152 (378)
149 PRK15475 oxaloacetate decarbox 45.6 1.9E+02 0.0041 31.2 10.4 99 144-248 229-337 (433)
150 COG3969 Predicted phosphoadeno 44.4 29 0.00063 36.7 4.2 37 528-564 27-64 (407)
151 PF02601 Exonuc_VII_L: Exonucl 43.1 43 0.00094 35.6 5.6 25 610-634 58-87 (319)
152 PRK15476 oxaloacetate decarbox 42.8 2.6E+02 0.0056 30.3 10.8 99 144-248 229-337 (433)
153 PRK15477 oxaloacetate decarbox 42.8 2.6E+02 0.0056 30.3 10.8 99 144-248 229-337 (433)
154 KOG1965 Sodium/hydrogen exchan 42.7 55 0.0012 37.3 6.4 70 226-297 103-180 (575)
155 PRK09765 PTS system 2-O-a-mann 41.9 6E+02 0.013 29.9 15.1 25 138-162 419-443 (631)
156 TIGR00808 malonate_madM malona 40.7 47 0.001 32.5 4.7 42 17-58 91-133 (254)
157 COG4827 Predicted transporter 39.9 3.8E+02 0.0083 26.5 12.3 93 6-101 10-105 (239)
158 COG2431 Predicted membrane pro 37.6 4.9E+02 0.011 27.1 18.3 49 253-301 165-213 (297)
159 PRK04972 putative transporter; 37.2 1.8E+02 0.0039 33.6 9.8 99 193-294 410-515 (558)
160 TIGR03136 malonate_biotin Na+- 36.9 5.8E+02 0.013 27.7 18.2 101 144-248 195-303 (399)
161 PF03652 UPF0081: Uncharacteri 35.7 1.9E+02 0.0041 26.6 7.8 58 453-513 37-95 (135)
162 PRK03818 putative transporter; 35.5 4.4E+02 0.0095 30.5 12.5 78 3-88 431-514 (552)
163 PF06826 Asp-Al_Ex: Predicted 34.8 1.5E+02 0.0034 28.3 7.4 87 192-281 22-115 (169)
164 COG2431 Predicted membrane pro 34.5 1.7E+02 0.0036 30.4 7.7 53 4-56 131-188 (297)
165 PF03547 Mem_trans: Membrane t 34.3 1.8E+02 0.004 31.4 9.0 86 194-280 244-335 (385)
166 PRK01821 hypothetical protein; 34.3 2.8E+02 0.006 25.5 8.5 37 229-266 71-109 (133)
167 PF01507 PAPS_reduct: Phosphoa 33.3 77 0.0017 29.8 5.2 51 530-591 1-51 (174)
168 COG3763 Uncharacterized protei 32.7 2.4E+02 0.0053 22.7 6.7 35 138-175 11-45 (71)
169 COG3329 Predicted permease [Ge 32.1 3.6E+02 0.0077 28.4 9.6 65 253-317 74-138 (372)
170 COG1269 NtpI Archaeal/vacuolar 31.3 9.4E+02 0.02 28.5 15.6 18 5-22 375-392 (660)
171 PF03686 UPF0146: Uncharacteri 31.3 84 0.0018 28.6 4.6 35 445-479 73-107 (127)
172 COG0679 Predicted permeases [G 30.7 6.6E+02 0.014 26.5 27.3 139 191-334 165-306 (311)
173 PRK00109 Holliday junction res 30.2 1.3E+02 0.0029 27.6 6.0 56 455-513 42-97 (138)
174 PRK01658 holin-like protein; V 30.0 3.2E+02 0.0069 24.7 8.1 38 229-267 66-105 (122)
175 COG0679 Predicted permeases [G 30.0 4.7E+02 0.01 27.6 10.9 99 195-296 11-112 (311)
176 COG1902 NemA NADH:flavin oxido 29.9 7.5E+02 0.016 26.9 12.9 226 363-636 74-325 (363)
177 PRK09903 putative transporter 29.8 6E+02 0.013 26.7 11.7 80 2-90 199-279 (314)
178 PRK04169 geranylgeranylglycery 29.5 3.4E+02 0.0073 27.5 9.1 86 444-545 9-94 (232)
179 cd04734 OYE_like_3_FMN Old yel 28.4 6.4E+02 0.014 27.1 11.7 130 483-635 185-321 (343)
180 PRK04148 hypothetical protein; 28.0 70 0.0015 29.4 3.6 34 446-479 81-114 (134)
181 KOG2575 Glucosyltransferase - 27.4 7.7E+02 0.017 27.2 11.5 149 180-345 198-353 (510)
182 PRK10696 tRNA 2-thiocytidine b 27.0 4.9E+02 0.011 26.6 10.1 39 528-566 29-69 (258)
183 COG1570 XseA Exonuclease VII, 26.3 1.1E+02 0.0023 34.0 5.2 54 579-634 148-205 (440)
184 COG3199 Predicted inorganic po 26.1 2.4E+02 0.0051 30.3 7.4 102 506-634 3-112 (355)
185 COG0175 CysH 3'-phosphoadenosi 26.1 2E+02 0.0044 29.6 7.1 32 531-566 42-73 (261)
186 PRK12857 fructose-1,6-bisphosp 25.9 7.6E+02 0.016 25.8 11.2 68 441-515 18-85 (284)
187 PRK13523 NADPH dehydrogenase N 25.3 4.2E+02 0.009 28.5 9.5 125 483-635 186-311 (337)
188 COG0816 Predicted endonuclease 25.2 2.1E+02 0.0045 26.6 6.2 56 455-513 41-96 (141)
189 COG2201 CheB Chemotaxis respon 25.2 3.8E+02 0.0081 29.0 8.9 44 457-510 37-80 (350)
190 TIGR02185 Trep_Strep conserved 25.0 6.5E+02 0.014 24.5 14.7 82 194-276 86-184 (189)
191 TIGR02057 PAPS_reductase phosp 24.6 4.5E+02 0.0098 26.4 9.1 52 529-590 26-77 (226)
192 PF05982 DUF897: Domain of unk 24.2 3.4E+02 0.0074 28.9 8.2 38 11-49 213-250 (327)
193 PF02844 GARS_N: Phosphoribosy 24.0 70 0.0015 27.8 2.7 23 453-475 48-70 (100)
194 KOG2718 Na+-bile acid cotransp 23.7 1.4E+02 0.003 32.5 5.4 45 9-54 117-162 (371)
195 PRK12737 gatY tagatose-bisphos 23.5 8.6E+02 0.019 25.4 11.3 69 440-515 17-85 (284)
196 cd01995 ExsB ExsB is a transcr 23.4 2.1E+02 0.0046 26.9 6.3 86 530-634 1-88 (169)
197 KOG0573 Asparagine synthase [A 23.4 4.2E+02 0.009 29.5 8.8 76 529-607 251-328 (520)
198 PF13593 DUF4137: SBF-like CPA 23.1 4.6E+02 0.01 27.8 9.3 91 196-290 7-100 (313)
199 PRK00523 hypothetical protein; 23.0 4.2E+02 0.009 21.6 6.6 26 146-174 20-45 (72)
200 PF09605 Trep_Strep: Hypotheti 22.5 7.2E+02 0.016 24.1 15.3 124 148-276 40-181 (186)
201 PRK12933 secD preprotein trans 22.4 1.3E+03 0.028 27.0 13.9 24 140-163 574-597 (604)
202 PRK09824 PTS system beta-gluco 22.1 1E+03 0.022 27.9 12.5 15 387-401 483-497 (627)
203 PRK09903 putative transporter 22.0 9.3E+02 0.02 25.3 21.0 135 194-336 173-310 (314)
204 COG5505 Predicted integral mem 22.0 9.6E+02 0.021 25.4 22.9 95 226-328 276-370 (384)
205 PF01171 ATP_bind_3: PP-loop f 22.0 6.1E+02 0.013 24.1 9.3 94 360-477 1-106 (182)
206 PRK14561 hypothetical protein; 22.0 4.2E+02 0.0091 25.8 8.1 22 530-551 2-23 (194)
207 PF13829 DUF4191: Domain of un 21.7 2.8E+02 0.0061 27.9 6.7 48 25-80 18-66 (224)
208 COG0037 MesJ tRNA(Ile)-lysidin 21.7 8.9E+02 0.019 24.9 11.9 98 358-478 21-131 (298)
209 PF07905 PucR: Purine cataboli 20.9 4.5E+02 0.0099 23.4 7.5 86 389-478 23-110 (123)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=1.4e-138 Score=1216.06 Aligned_cols=678 Identities=34% Similarity=0.594 Sum_probs=611.7
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhcc
Q 038780 2 NLYSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTS 80 (694)
Q Consensus 2 ~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts 80 (694)
.+++++++|++|+||++|+|+|++.+||++|+++.+|+.++++|+++| .++++++.. ..........+++|+++|.||
T Consensus 103 ~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~-~~~~~~~~~~l~~g~alS~Ts 181 (832)
T PLN03159 103 VLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQV-SRNVHQGTFILFLGVALSVTA 181 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhHHHHHHHHHHHHhh
Confidence 588999999999999999999999999999999999999999999999 877776432 111122456799999999999
Q ss_pred HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 81 FPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWII 160 (694)
Q Consensus 81 ~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~ 160 (694)
+|+++++|+|+|+++|+.||+++++++++|+++|++++++.++...+ .+...++|.++..++|++++++++||++.|+.
T Consensus 182 ~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~-~~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~ 260 (832)
T PLN03159 182 FPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAEND-STSLASLWVLLSSVAFVLFCFYVVRPGIWWII 260 (832)
T ss_pred HHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887665432 22334667777788888899999999999999
Q ss_pred HHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccc
Q 038780 161 RRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKS 240 (694)
Q Consensus 161 ~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~ 240 (694)
|+++++++.+|.++.+++++++++++++|.+|+|+++|||++|+++|+. |+++.+.+|++++++++|+|+||+++||++
T Consensus 261 r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~-~~~~~l~ekle~~~~~lflPlFFv~vGl~i 339 (832)
T PLN03159 261 RRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-PLGVTLIEKLEDFVSGLLLPLFFAISGLKT 339 (832)
T ss_pred HhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCc-chHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 9999988889999999999999999999999999999999999999984 899999999999999999999999999999
Q ss_pred cccccccCCchh-HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHH
Q 038780 241 NLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVV 319 (694)
Q Consensus 241 dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~ 319 (694)
|+..+.....|. +++++++++++|+++++++++++|+|++|++.+|++||+||+++++++++|++.|+++++.|+++++
T Consensus 340 dl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl 419 (832)
T PLN03159 340 NVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVL 419 (832)
T ss_pred eHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHH
Confidence 998886544455 5667778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCcccccccCCCCCCCceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeecc
Q 038780 320 LILILASIIPIIVRKLHDFSNTYPGYQQRNILHGASNDDLRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPL 399 (694)
Q Consensus 320 ~~lltt~i~~~l~~~l~~p~~~~~~~~~r~i~~~~~~~~lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel 399 (694)
+++++|.+.+|++.++|||+|||..|++|++|+.++++|+|||+|+|++|+++++++|++++++++++|.++|++||+||
T Consensus 420 ~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL 499 (832)
T PLN03159 420 VAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVEL 499 (832)
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhccccccCCC----CCCCCchhHHHHHHHHhHhCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecC
Q 038780 400 TGGSTPLLINHQLGQKYS----KSGAHRQPIIHVFRYFKAEHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPC 475 (694)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~ 475 (694)
++|++|.+++|+.+++.. +...++|+++++|+.|++++ ++|+|+++|++|||++||+|||++|+|+++|+||+||
T Consensus 500 ~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpf 578 (832)
T PLN03159 500 TGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPF 578 (832)
T ss_pred cCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECC
Confidence 999999999998754321 12355899999999999864 5899999999999999999999999999999999999
Q ss_pred ccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCCCCCCCccccCCceeEEEEeccCCcchHHHHHHHHHHHhCC
Q 038780 476 HRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIHGPSSIFVAPFVYRLAVLYMGGEDDMEALAYARRMARSS 555 (694)
Q Consensus 476 h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~ 555 (694)
||+|+.||++++++..+|++|+|||++|||||||+||||.. +..+.+.....+||+++|+|||||||||+||+|||+||
T Consensus 579 hk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~-~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~~p 657 (832)
T PLN03159 579 HKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLS-GATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHP 657 (832)
T ss_pred CCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCC-ccccccccccceeEEEEecCCcchHHHHHHHHHHhcCC
Confidence 99999999999889999999999999999999999999963 12112234457899999999999999999999999999
Q ss_pred CeEEEEEEEeecCCcCc--------------------cccccchHHHHHHHhhhcccccCCCcEEEEEEEecCchHHHHH
Q 038780 556 RVHLTVIHFTLSKESGY--------------------ARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAVKDGSDTAMI 615 (694)
Q Consensus 556 ~v~ltv~~~~~~~~~~~--------------------~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g~~~~~~ 615 (694)
++++||+||+++++..+ +++|+++|+++++||+.++. .++++.|.|+.|+||+|+++.
T Consensus 658 ~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~--~~~~v~y~E~~V~~~~e~~~~ 735 (832)
T PLN03159 658 GITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNA--GNESIVYTEKVVSNGEETVAA 735 (832)
T ss_pred CeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcC--CCCceEEEEEecCCHHHHHHH
Confidence 99999999986532211 34577899999999999876 568899999999999999999
Q ss_pred HHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEeeecccCCcchhcc
Q 038780 616 IRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQQQIIRDEQNEALG 686 (694)
Q Consensus 616 i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvqq~~~~~~~~~~~~ 686 (694)
+|++.++|||+||||+|+.+|++|+||+||+||||||+|||+|||+||++++||||||||..+..+..++|
T Consensus 736 l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~~~~~~~~~~ 806 (832)
T PLN03159 736 IRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYVGTGPQPDDLG 806 (832)
T ss_pred HHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeeccCCCCcccCC
Confidence 99999999999999999888999999999999999999999999999999999999999997655554444
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-114 Score=993.15 Aligned_cols=670 Identities=39% Similarity=0.626 Sum_probs=606.1
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCC-C---chhHHHHHHHHH
Q 038780 2 NLYSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQE-Y---LDDWIDLFTATT 76 (694)
Q Consensus 2 ~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~-~---~~~~~l~ig~~l 76 (694)
.+++++.+|+++++|+.|+|+|.+.++|.+|++..||+.++++|+..| .+...+........ . ...+..++..++
T Consensus 83 ~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (769)
T KOG1650|consen 83 VLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQ 162 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999998 76666543322111 1 123778899999
Q ss_pred hhccHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 77 MLTSFPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLM 156 (694)
Q Consensus 77 s~Ts~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~ 156 (694)
|.||||+++++|.|+|++||++||+++++++++|+++|+++++..+..+....+.....|.++..++|++++.+++||.+
T Consensus 163 s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~ 242 (769)
T KOG1650|consen 163 SITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLM 242 (769)
T ss_pred hcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhH
Confidence 99999999999999999999999999999999999999998888877665433455678888899999999999999999
Q ss_pred HHHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhc-hhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhh
Q 038780 157 FWIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVG-IQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATF 235 (694)
Q Consensus 157 ~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g-~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~ 235 (694)
.|+.||+|+++|+++.|...++..++.++.+++.++ +|+++|||+.|+++|++||+++.+.||+|++.+++|+|+||+.
T Consensus 243 ~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~ 322 (769)
T KOG1650|consen 243 KWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAI 322 (769)
T ss_pred HHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred hcccccccccccCCchh-HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhH
Q 038780 236 CGLKSNLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEF 314 (694)
Q Consensus 236 ~Gl~~dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f 314 (694)
+|+++|+..+.. |. ....+...+++|++++..++.++|+|++|++.+|++||+||.+|++.++.+++.|+++++.|
T Consensus 323 ~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f 399 (769)
T KOG1650|consen 323 SGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGF 399 (769)
T ss_pred hccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchH
Confidence 999999998875 66 77788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCcccccccCCCCCCCceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEE
Q 038780 315 TVAVVLILILASIIPIIVRKLHDFSNTYPGYQQRNILHGASNDDLRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGL 394 (694)
Q Consensus 315 ~~lv~~~lltt~i~~~l~~~l~~p~~~~~~~~~r~i~~~~~~~~lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~L 394 (694)
++++++++++|+++||+++.+|||.++|..|++|++|+.++++++|||.|+|+++++++++++++++.+++++|.++|++
T Consensus 400 ~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~l 479 (769)
T KOG1650|consen 400 TVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYAL 479 (769)
T ss_pred HHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EeeccCCCCcchhhccccccC-CCCC-CCCchhHHHHHHHHhHhCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEE
Q 038780 395 YLEPLTGGSTPLLINHQLGQK-YSKS-GAHRQPIIHVFRYFKAEHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLII 472 (694)
Q Consensus 395 hlvel~~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIi 472 (694)
|++||.+|+.|++++|+.+++ ..+. ...++++.++|+.|++.+.+.|.++++|+++|+.+||||||++|.++++++|+
T Consensus 480 hlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~lii 559 (769)
T KOG1650|consen 480 HLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLII 559 (769)
T ss_pred eeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEE
Confidence 999999999999999987655 3333 34456899999999985456899999999999999999999999999999999
Q ss_pred ecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCCCCCCCccccCCceeEEEEeccCCcchHHHHHHHHHHH
Q 038780 473 LPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIHGPSSIFVAPFVYRLAVLYMGGEDDMEALAYARRMA 552 (694)
Q Consensus 473 lp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma 552 (694)
+|||++|+.++.+++.+..+|.+|++|+++|||||||++|||. .+....+.....++|+++|.||+|||||+++++||+
T Consensus 560 lpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~-~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~ 638 (769)
T KOG1650|consen 560 LPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGL-RRSGVTQKRGSSYKVVVLFLGGKDDREALALAKRMA 638 (769)
T ss_pred eehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCc-ccccceecccceeEEEEEecCChhhHHHHHHHHHHh
Confidence 9999999955579999999999999999999999999999972 111111223367899999999999999999999999
Q ss_pred hCCCeEEEEEEEeecCCcCc----cccccchHHHHHHHh-hhcccccCCCcEEEE-EEEecCchHHHHHHHhhhcCCcEE
Q 038780 553 RSSRVHLTVIHFTLSKESGY----ARWTNTIDDEFLNGL-KKNDEILGNLNIIYK-EEAVKDGSDTAMIIRSMEEKYDLV 626 (694)
Q Consensus 553 ~~~~v~ltv~~~~~~~~~~~----~~~e~~~d~~~i~~~-~~~~~~~~~~~v~y~-e~~v~~g~~~~~~i~~~~~~~DLi 626 (694)
+||++++||+|+.++++..+ +++++.+|++..+++ +..+. .+.++.|. |+.++++.|+.+.++++.++|||+
T Consensus 639 ~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ 716 (769)
T KOG1650|consen 639 ENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRE--SNLDIIYAEEKIVLNGAETTALLRSITEDYDLF 716 (769)
T ss_pred hCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhh--chhhhhhhhHHHHhcchhHHHHHHHhccccceE
Confidence 99999999999998644322 367778888888888 54433 34567888 699999999999999999999999
Q ss_pred EEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEeeecc
Q 038780 627 LVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQQQII 677 (694)
Q Consensus 627 iVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvqq~~~ 677 (694)
+|||+++.+++.+.|++||+||||||+|||.|+|+||..++||||+|||..
T Consensus 717 ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 717 IVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLY 767 (769)
T ss_pred EEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeec
Confidence 999999999999999999999999999999999999999999999999975
No 3
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=8.2e-41 Score=381.51 Aligned_cols=325 Identities=16% Similarity=0.180 Sum_probs=278.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhcc
Q 038780 2 NLYSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTS 80 (694)
Q Consensus 2 ~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts 80 (694)
.++.++++|++++||.+|+|+|++.+++.++..+..++.++++|+.++ .+++.++. ++..++++|+++|.||
T Consensus 56 ~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~al~lg~~ls~tS 128 (558)
T PRK10669 56 LAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGW-------SLMTGIVFGLCLSTAS 128 (558)
T ss_pred HHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999998888888888999999988 77666653 4678899999999999
Q ss_pred HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccchH----HHHHHHHHHHHHHHHHHHHHH
Q 038780 81 FPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDII---TNASIR----VGIKAMALSLSLIVFVTIVLR 153 (694)
Q Consensus 81 ~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~v~r 153 (694)
++++.++|+|+|+++++.||+++++++++|+.+|++++++..+... +..+.. ...+.++..+++++++.++.|
T Consensus 129 ~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (558)
T PRK10669 129 TVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGR 208 (558)
T ss_pred HHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876554321 111111 123455566677778888999
Q ss_pred HHHHHHHHHCCCCCCCCchHHHHHHHHHHHHHHH-HHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHH
Q 038780 154 RLMFWIIRRTPEGKPVKSSYTIFIVCLVIVVAVV-GETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLM 232 (694)
Q Consensus 154 ~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~-ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlF 232 (694)
|+++|+.++.++.+ .+|.+...++++++++++. ++.+|+|+++|||++|+++|+. |+++++.+...++ .++|+|+|
T Consensus 209 ~~~~~l~~~~~~~~-~~e~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plF 285 (558)
T PRK10669 209 RLVPWILARSAATG-SRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLF 285 (558)
T ss_pred HHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHH
Confidence 99999999987654 5788888888888888865 6999999999999999999986 6788888877776 48899999
Q ss_pred HhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChh
Q 038780 233 ATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTG 312 (694)
Q Consensus 233 F~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~ 312 (694)
|+++|+++|+..+...+ +..+.++++.+++|++++++.++++|+++|+++.+|++|++||+++++++.+|++.|+++++
T Consensus 286 Fv~~G~~~d~~~l~~~~-~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~ 364 (558)
T PRK10669 286 FVSVGMLFDPMILIQQP-LAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQA 364 (558)
T ss_pred HHHhhhhcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHH
Confidence 99999999998776432 22455667788999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Q 038780 313 EFTVAVVLILILASIIPIIVRKLHD 337 (694)
Q Consensus 313 ~f~~lv~~~lltt~i~~~l~~~l~~ 337 (694)
.|+.+++++++|++++|++.++..|
T Consensus 365 ~~~~~v~~~~~t~~~~P~l~~~~~~ 389 (558)
T PRK10669 365 GQNLVLAGAILSIMLNPVLFTLLER 389 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999888764
No 4
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.8e-40 Score=379.95 Aligned_cols=318 Identities=15% Similarity=0.209 Sum_probs=266.7
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhcc
Q 038780 2 NLYSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTS 80 (694)
Q Consensus 2 ~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts 80 (694)
.++.++++|++++||++|+|+|++.+++.+|+++.+|..++++|++++ .++++++. ++..++++|.+++.||
T Consensus 55 ~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~-------~~~~al~ig~~la~SS 127 (621)
T PRK03562 55 SILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGL-------RWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999988 77776654 4678999999999999
Q ss_pred HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHH----HHHHHHHHHHHH
Q 038780 81 FPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNA-SIRVGIKAMALSLS----LIVFVTIVLRRL 155 (694)
Q Consensus 81 ~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~v~r~~ 155 (694)
++++.++|+|+|+++|+.||.++++++++|+.+|++++++..+...+.. +....++.++..++ ++++..++.||+
T Consensus 128 taiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l 207 (621)
T PRK03562 128 TAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPA 207 (621)
T ss_pred HHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887655432111 11111222222222 222334556666
Q ss_pred HHHHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhh
Q 038780 156 MFWIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATF 235 (694)
Q Consensus 156 ~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~ 235 (694)
++|+.|+. .+|.+...+++++++++++++.+|+|+++|||++|+++++. ++++++.+++++|. ++|+|+||++
T Consensus 208 ~~~~~~~~-----~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf~-~lll~lFFi~ 280 (621)
T PRK03562 208 LRFVARSG-----LREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLASS-EYRHALESDIEPFK-GLLLGLFFIA 280 (621)
T ss_pred HHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ccHHHHHHHHHHHH-HHHHHHHHHH
Confidence 66665542 35778888899999999999999999999999999999986 68999999999995 9999999999
Q ss_pred hcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHH
Q 038780 236 CGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFT 315 (694)
Q Consensus 236 ~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~ 315 (694)
+||++|+..+...+ |.++.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++.++.+.|+++++.|+
T Consensus 281 vG~~id~~~l~~~~-~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~ 359 (621)
T PRK03562 281 VGMSIDFGTLLENP-LRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAK 359 (621)
T ss_pred hhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHH
Confidence 99999998876542 33455566678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 038780 316 VAVVLILILASIIPIIVRK 334 (694)
Q Consensus 316 ~lv~~~lltt~i~~~l~~~ 334 (694)
.+++++++|++++|++...
T Consensus 360 ~lv~~v~lS~~~tP~l~~~ 378 (621)
T PRK03562 360 LLTLAVALSMAATPLLLVL 378 (621)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999888888877766554
No 5
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-40 Score=355.94 Aligned_cols=329 Identities=21% Similarity=0.336 Sum_probs=285.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhccChHHHHhcchh-HHHHHHHHHHHHHHHH-HHHHH-HhhhcccCCCchhHHHHHHHHHh
Q 038780 1 ENLYSLTIFGYIFFMFLIGVKMDLSLITKLGKR-EWCISLSLMFNLLLVG-MICQT-ISQILEPQEYLDDWIDLFTATTM 77 (694)
Q Consensus 1 ~~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~-~~~i~~~~~~~p~~~g-~~~~~-l~~~~~~~~~~~~~~l~ig~~ls 77 (694)
|+++.++++|++++||.+|+|+|++.+||++|+ +...+..++..|+.++ ...+. ++. ++..++++|.+++
T Consensus 56 ~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~-------~~~~al~lg~~l~ 128 (397)
T COG0475 56 EIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL-------SLIAALFLGAALA 128 (397)
T ss_pred HHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc-------ChHHHHHHHHHHH
Confidence 467889999999999999999999999999999 8888899999999888 44443 332 4678999999999
Q ss_pred hccHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 78 LTSFPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMF 157 (694)
Q Consensus 78 ~Ts~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 157 (694)
.||+++++++++|+|.++++.||+++++++++|+.++++++++..+.+++......++..+....+|.++..+..|++.+
T Consensus 129 ~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~ 208 (397)
T COG0475 129 LSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLP 208 (397)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887654333333455556666666666666677777
Q ss_pred HHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhc
Q 038780 158 WIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCG 237 (694)
Q Consensus 158 ~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~G 237 (694)
|+.|+..+. +.+|..+..++++++.+++++|.+|+|+++|||++|+++++.....++++++++++.+++|+|+||+.+|
T Consensus 209 ~~~r~~~~~-~~~e~~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG 287 (397)
T COG0475 209 PLFRRVAKT-ESSELFILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVG 287 (397)
T ss_pred HHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhh
Confidence 777776532 2468889999999999999999999999999999999999995444799999999998899999999999
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHH
Q 038780 238 LKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVA 317 (694)
Q Consensus 238 l~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~l 317 (694)
|++|++.+.....+ ...++.++.++|++++++.+|..|.+.++++..|..+.++|+++++.++.+.. +.++++.++..
T Consensus 288 ~~~dl~~l~~~~~~-~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~ 365 (397)
T COG0475 288 MSLDLGVLLENLLL-ILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAV 365 (397)
T ss_pred HHcCHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHH
Confidence 99999999876322 67778888899999999999999999999999999999999999999998877 68889999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccc
Q 038780 318 VVLILILASIIPIIVRKLHDFS 339 (694)
Q Consensus 318 v~~~lltt~i~~~l~~~l~~p~ 339 (694)
+.+++++|.+.+.+.+.+++..
T Consensus 366 v~~smi~t~i~~~~~~~~~~~~ 387 (397)
T COG0475 366 VILSMITTPILPLLTPILLKRL 387 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888888888543
No 6
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=2e-39 Score=370.80 Aligned_cols=321 Identities=17% Similarity=0.213 Sum_probs=265.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhcc
Q 038780 2 NLYSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTS 80 (694)
Q Consensus 2 ~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts 80 (694)
.++.++++|++++||++|+|+|++.+++.+|+++.+|..++++|++++ .+.++++. ++..++++|++++.||
T Consensus 55 ~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~-------~~~~a~~~g~~la~SS 127 (601)
T PRK03659 55 EILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDF-------SWQAAVVGGIGLAMSS 127 (601)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999877 65555533 4678999999999999
Q ss_pred HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 81 FPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNAS--IRVGIKAMALSLSLIVFVTIVLRRLMFW 158 (694)
Q Consensus 81 ~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~r~~~~~ 158 (694)
++++.++|+|+|+++|+.||+++++.+++|+.++++++++..+....... .....+.++..++++++..++.||+++|
T Consensus 128 Taiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (601)
T PRK03659 128 TAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRF 207 (601)
T ss_pred HHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776554322111 1111111222222222334556666666
Q ss_pred HHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcc
Q 038780 159 IIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGL 238 (694)
Q Consensus 159 ~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl 238 (694)
+.+. +.+|.++..+++++++++++++.+|+|+++|||++|+++++. ++++++.++++++. ++|+|+||+++||
T Consensus 208 ~~~~-----~~~e~~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf~-~lll~lFFi~vGm 280 (601)
T PRK03659 208 IAAS-----GVREVFTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAES-EYRHELEIAIEPFK-GLLLGLFFISVGM 280 (601)
T ss_pred HHHc-----CCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-chHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 5443 246788888999999999999999999999999999999996 68999999999985 9999999999999
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHH
Q 038780 239 KSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAV 318 (694)
Q Consensus 239 ~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv 318 (694)
++|+..+...+ +.++.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.++
T Consensus 281 ~id~~~l~~~~-~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv 359 (601)
T PRK03659 281 ALNLGVLYTHL-LWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLL 359 (601)
T ss_pred hccHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99998876542 22555667778899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 038780 319 VLILILASIIPIIVRKLHDF 338 (694)
Q Consensus 319 ~~~lltt~i~~~l~~~l~~p 338 (694)
+++++|++++|.+.+ +|+|
T Consensus 360 ~~v~ls~~~tP~l~~-~~~~ 378 (601)
T PRK03659 360 VVVTLSMMTTPLLMK-LIDK 378 (601)
T ss_pred HHHHHHHHHHHHHHH-HhHH
Confidence 888888876655554 5544
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=2.8e-32 Score=311.14 Aligned_cols=326 Identities=13% Similarity=0.053 Sum_probs=269.3
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHH-HHHhhhcccCCCchhHHHHHHHHHhhc
Q 038780 2 NLYSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MIC-QTISQILEPQEYLDDWIDLFTATTMLT 79 (694)
Q Consensus 2 ~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~-~~l~~~~~~~~~~~~~~l~ig~~ls~T 79 (694)
..+.++++|++++||..|+|+|++.+|+++++++.++..++++|++++ ..+ ++++. ++..++++|++++.|
T Consensus 58 ~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~-------~~~~alllgai~s~T 130 (562)
T PRK05326 58 LAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGL-------DWLEGLLLGAIVGST 130 (562)
T ss_pred HHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHhhhhccC
Confidence 467899999999999999999999999999999999999999999885 444 44433 578999999999999
Q ss_pred cHHHHHHHHHhccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 80 SFPVVACFLMHLKI-INSELGHFALSTALLCDLQSVILVNSYNYMDIITNAS-IRVGIKAMALSLSLIVFVTIVLRRLMF 157 (694)
Q Consensus 80 s~~vv~~iL~el~~-~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~r~~~~ 157 (694)
+++++.++++|+|+ +++++|+++.+.+.+||.++++++.++..+...+..+ .+..++.++..+++.+++.++.++++.
T Consensus 131 d~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~ 210 (562)
T PRK05326 131 DAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLV 210 (562)
T ss_pred chHHHHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999995 7999999999999999999998887766654433211 122234445555566677788888999
Q ss_pred HHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhc
Q 038780 158 WIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCG 237 (694)
Q Consensus 158 ~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~G 237 (694)
|+.||.+.. .++.+..+++++++++++++|.+|.|+++|+|++|+++++.++..+...+++.....+++.|+||+.+|
T Consensus 211 ~l~~~~~~~--~~~~~~i~~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lG 288 (562)
T PRK05326 211 QLLNRIALP--AEGLYPILVLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLG 288 (562)
T ss_pred HHHHhccCc--hhhHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887431 245678888999999999999999999999999999999986555555555665566899999999999
Q ss_pred ccccccccccCCchh-HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCC-hhhHH
Q 038780 238 LKSNLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRN-TGEFT 315 (694)
Q Consensus 238 l~~dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~-~~~f~ 315 (694)
+.+|++.+.+. .|. +++.+++.+++|++++++..+.++++++|+..+|+. ++||+++++++.++...|+.+ +..|+
T Consensus 289 l~~~~~~l~~~-~~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~ 366 (562)
T PRK05326 289 LLVTPSRLLDI-ALPALLLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFN 366 (562)
T ss_pred HHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhh
Confidence 99999877643 233 333445667899999999999999999999999994 899999999999999999986 56788
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 038780 316 VAVVLILILASIIPIIVRKLHDF 338 (694)
Q Consensus 316 ~lv~~~lltt~i~~~l~~~l~~p 338 (694)
++.+++++|+.+.++.++.+.|.
T Consensus 367 ~~~~vvl~S~~i~g~tl~~~a~~ 389 (562)
T PRK05326 367 VVFFVVLVSLLLQGTTLPWAARK 389 (562)
T ss_pred hhheeeHHHHHHHHhhHHHHHHH
Confidence 88899999999988888887754
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.97 E-value=3.6e-34 Score=313.01 Aligned_cols=327 Identities=22% Similarity=0.336 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHH-H-HHHHHHhhhcccCCCchhHHHHHHHHHhhc
Q 038780 2 NLYSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLV-G-MICQTISQILEPQEYLDDWIDLFTATTMLT 79 (694)
Q Consensus 2 ~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~-g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~T 79 (694)
.++.++++|+.++||.+|+|+|.+.+||++++++.+++.++++|++. + .+.+++.. .+.++..++++|.+++.|
T Consensus 47 ~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~al~l~~~~~~t 122 (380)
T PF00999_consen 47 SFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFILVGFLLSFFLFI----LGLSWAEALLLGAILSAT 122 (380)
T ss_dssp -S-SSHHHHS--SSHHHHTTGGGG-----------------------------------------------TTHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhHHHHHHHHhhcc----chhhhHHHhhhHHhhhcc
Confidence 46788999999999999999999999999999999999999999999 6 55533210 111578899999999999
Q ss_pred cHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 80 SFPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIIT-NASIRVGIKAMALSLSLIVFVTIVLRRLMFW 158 (694)
Q Consensus 80 s~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~ 158 (694)
|++++.++++|.+..+++.++++++.+++||+.+++++.+.....+.+ ..+.......++..+...++..++.+++..|
T Consensus 123 s~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (380)
T PF00999_consen 123 SPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRR 202 (380)
T ss_dssp -HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT------------------------------------------
T ss_pred cccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHH
Confidence 999999999999999999999999999999999999988776665211 1111111122222222333334444444444
Q ss_pred HHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcc
Q 038780 159 IIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGL 238 (694)
Q Consensus 159 ~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl 238 (694)
+.|+. ++.++.+...++++++.+++++|.+|.++++|+|++|+++++. +.++++.++++++.+++|.|+||+.+|+
T Consensus 203 ~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~ 278 (380)
T PF00999_consen 203 LIRRA---SPSSEIFILLVLALILLLYGLAEILGLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGM 278 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhc---cccchhhHHHHHHHHhhhccccccccccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcc
Confidence 44443 1346778899999999999999999999999999999999955 6777899999999999999999999999
Q ss_pred cccccccc-cCCchh-HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHH
Q 038780 239 KSNLRDLS-KGLSYP-LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTV 316 (694)
Q Consensus 239 ~~dl~~l~-~~~~~~-~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~ 316 (694)
++|++.+. +...|. .+.+.+..+++|++++++.+++.|++++|+..+|+.+++||+++++++..+.+.|.++++.+++
T Consensus 279 ~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~ 358 (380)
T PF00999_consen 279 SLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTI 358 (380)
T ss_dssp --------------------------------------------HHHHTTTTSS--HHHHHHHHHHHHH-----------
T ss_pred cccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99998885 122343 5555666668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 038780 317 AVVLILILASIIPIIVRKLH 336 (694)
Q Consensus 317 lv~~~lltt~i~~~l~~~l~ 336 (694)
++.++++|+++.|+.++.+.
T Consensus 359 ~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 359 IIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp --------------------
T ss_pred heeeeeeHHHHHHHHHHHHh
Confidence 99999999999998888765
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.97 E-value=8.5e-30 Score=265.55 Aligned_cols=230 Identities=21% Similarity=0.312 Sum_probs=198.2
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHH-HHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhc
Q 038780 2 NLYSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNL-LLVG-MICQTISQILEPQEYLDDWIDLFTATTMLT 79 (694)
Q Consensus 2 ~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p-~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~T 79 (694)
.++.++++|++++||.+|+|+|++.+||++|+++.+++.++++| ++++ .++++++. ++..++++|++++.|
T Consensus 42 ~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lg~~ls~T 114 (273)
T TIGR00932 42 GVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLLGL-------ALGAAVVIGIILALS 114 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999 6666 66666653 468899999999999
Q ss_pred cHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 80 SFPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWI 159 (694)
Q Consensus 80 s~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~ 159 (694)
|+|++.++++|+|+.+++.|+++++++++||+++++++.+.....++...+.....+.+...++++++.+++.|+..+|+
T Consensus 115 s~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (273)
T TIGR00932 115 STAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPV 194 (273)
T ss_pred HHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888776543222222334444455556666777888999999
Q ss_pred HHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhccc
Q 038780 160 IRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLK 239 (694)
Q Consensus 160 ~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~ 239 (694)
.|+.+++++ +|.+...++.+++++++++|.+|.|+++|||++|+++++. +.++++.++++.+. ++|+|+||+++|++
T Consensus 195 ~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~ 271 (273)
T TIGR00932 195 LRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMS 271 (273)
T ss_pred HHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCcc
Confidence 998876543 5788889999999999999999999999999999999997 45788999999999 99999999999999
Q ss_pred cc
Q 038780 240 SN 241 (694)
Q Consensus 240 ~d 241 (694)
+|
T Consensus 272 ~~ 273 (273)
T TIGR00932 272 VD 273 (273)
T ss_pred CC
Confidence 87
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.1e-28 Score=237.41 Aligned_cols=320 Identities=17% Similarity=0.195 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhccHH
Q 038780 4 YSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTSFP 82 (694)
Q Consensus 4 ~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~ 82 (694)
..++++|++++||-+|++.+++++.....-++.-++.++.+-...| ...+.+++. +...+++|.++|..|+.
T Consensus 58 ~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws-------~~~glvfGlaLS~aSTV 130 (408)
T COG4651 58 PELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWS-------FGTGIVFGLALSVASTV 130 (408)
T ss_pred HHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCC-------cccceeeeehhhhHHHH
Confidence 4799999999999999999999998877777777778887777788 777878764 45678899999999999
Q ss_pred HHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccch----HHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 83 VVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDII---TNASI----RVGIKAMALSLSLIVFVTIVLRRL 155 (694)
Q Consensus 83 vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~v~r~~ 155 (694)
|..|-|+|+++++++.||++++.-++.|+..++.+....++..- +.... ....+.+.+...|+.++.++.|++
T Consensus 131 vllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~Vgrrv 210 (408)
T COG4651 131 VLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRL 210 (408)
T ss_pred HHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888776554321 11111 122345668888999999999999
Q ss_pred HHHHHHHCC-CCCCCCchHHHHHHHHHHHHHHH-HHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHH
Q 038780 156 MFWIIRRTP-EGKPVKSSYTIFIVCLVIVVAVV-GETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMA 233 (694)
Q Consensus 156 ~~~~~~~~~-~~~~~~e~~~~~il~~~l~~~~~-ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF 233 (694)
.+|+..+.. .| ..|.+...+++.+++.++- ++.+|+++.+|||++|+++.+. .++++..|..-+. .+.|.-+||
T Consensus 211 iPw~le~~a~tG--srElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es-elshraa~~slpL-rdaFaVlFF 286 (408)
T COG4651 211 IPWILERVAATG--SRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLPL-RDAFAVLFF 286 (408)
T ss_pred HHHHHHHHHHcC--cHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcch-hhhHHHHHhccCH-HHHHHHHHH
Confidence 999998853 33 4688899999999888775 4899999999999999999988 4677766666665 477889999
Q ss_pred hhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhh
Q 038780 234 TFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGE 313 (694)
Q Consensus 234 ~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~ 313 (694)
+++||..|+..+.+. .+.+....++...+|-+..+...+.+|.|.+.++.++..+.+.|+++++++..|.+.+++++.-
T Consensus 287 vsVGmlf~P~~l~~~-pl~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~g 365 (408)
T COG4651 287 VSVGMLFDPMILIQQ-PLAVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAG 365 (408)
T ss_pred HHhhhhcCcHHhhcc-hHHHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHH
Confidence 999999998877655 3445666667778999999999999999999999999999999999999999999999999666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 038780 314 FTVAVVLILILASIIPIIVRKLH 336 (694)
Q Consensus 314 f~~lv~~~lltt~i~~~l~~~l~ 336 (694)
-..++...+++.. ..|+.....
T Consensus 366 r~LvlagailsIl-~nPllf~~~ 387 (408)
T COG4651 366 RDLVLAGAILSIL-LNPLLFALL 387 (408)
T ss_pred HHHHHHHHHHHHH-HhHHHHHHH
Confidence 6666555555544 445544444
No 11
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.87 E-value=5.7e-20 Score=207.41 Aligned_cols=320 Identities=10% Similarity=0.026 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhccHHH
Q 038780 5 SLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTSFPV 83 (694)
Q Consensus 5 ~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~v 83 (694)
.+-.+++..++|..|+++|.+.++++++..+.+++.++++|++++ ...+++... ++..++++|+++|+|++++
T Consensus 50 ~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~~~~~~l------~~~~alllGails~TDpva 123 (525)
T TIGR00831 50 IVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWILGI------PLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHhCCCCHHH
Confidence 455688999999999999999999999999999999999999987 655544322 5889999999999999999
Q ss_pred HHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 84 VACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDII-TNASIRVGIKAMALSLSLIVFVTIVLRRLMFWIIRR 162 (694)
Q Consensus 84 v~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~ 162 (694)
+.+++++.++ ++++.+++.+.+++||..+++++.+...+..+ +..+.....+.++..++..+++++++..+..|+.|+
T Consensus 124 v~~il~~~~~-p~rl~~il~gESllND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~ 202 (525)
T TIGR00831 124 VLGTFKSIRA-PKKLSILLEGESLLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRA 202 (525)
T ss_pred HHHHHhcCCC-CHHHHHHHhhhhhhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876 78899999999999999999999887766542 222222233333333333344444445556666655
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCc---hhHH---HHHHhhhhhhhhhhHHHhhh
Q 038780 163 TPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPL---ASTL---VEKLDTIVTGLFLPLMATFC 236 (694)
Q Consensus 163 ~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~---~~~l---~~kl~~~~~~~f~PlFF~~~ 236 (694)
..+. +.....+++++.+++++++|.+|.|+++++|++|+++++..+. ..+. .+.+-.....++-+++|+.+
T Consensus 203 ~~~~---~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvll 279 (525)
T TIGR00831 203 KIDD---PLVEIALTILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILI 279 (525)
T ss_pred hccc---cHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 2345778888899999999999999999999999999886433 1111 22222334577889999999
Q ss_pred cccccccccccCC-----chh--H-------HHHHHHHHHHHHHHHHHH--HHh-----hCCChhHHHHHHHHhhhhhhh
Q 038780 237 GLKSNLRDLSKGL-----SYP--L-------VFGMTIGLFFKLIAVYLP--AVW-----FNTHSTDAAALSLILTVKGIV 295 (694)
Q Consensus 237 Gl~~dl~~l~~~~-----~~~--~-------~~ii~~~~~~K~~~~~l~--~~~-----~~~~~~~~~~lg~~m~~kG~~ 295 (694)
|+++... +...+ .+. . +++.......+++..+.. .++ .+++||+.+.+++ ...||.+
T Consensus 280 Gl~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~v 357 (525)
T TIGR00831 280 GVQTPGT-IFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAI 357 (525)
T ss_pred HHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHH
Confidence 9998631 11110 111 1 111112233454433221 111 2478999999988 7889999
Q ss_pred hhhhhc-cccc--cC--CCC-----hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 038780 296 ELGTFG-TNFN--KQ--VRN-----TGEFTVAVVLILILASIIPIIVRKLH 336 (694)
Q Consensus 296 ~li~~~-~~~~--~~--~i~-----~~~f~~lv~~~lltt~i~~~l~~~l~ 336 (694)
+++++. +... .| .-. .-+|.+++++.++.....||+++++-
T Consensus 358 slA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 358 PLALALSFPNQLLSGMAFPARYELVFLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 999874 2211 11 111 12233444444555555577776654
No 12
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.86 E-value=1.3e-19 Score=205.44 Aligned_cols=292 Identities=11% Similarity=0.055 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHH-hhhcccCCCchhHHHHHHHHHhhccHHH
Q 038780 6 LTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTI-SQILEPQEYLDDWIDLFTATTMLTSFPV 83 (694)
Q Consensus 6 la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l-~~~~~~~~~~~~~~l~ig~~ls~Ts~~v 83 (694)
++++++++.+|.+|++++.+.+++.++..+.+...++.+.++++ ++++++ ... ++..++++|+++++|.+..
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL------~~~~ALLLGAILAPTDPVL 147 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL------NFPASLLMGACITATDPVL 147 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CHHHHHHHHhhhcCCcHHH
Confidence 88999999999999999999999999999999999999888888 776655 222 5889999999999999877
Q ss_pred HHHHHH---hcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-ccch------HHHHHHHHHHHHHHHHHHHHH
Q 038780 84 VACFLM---HLKIINSELGHFALSTALLCDLQSVILVNSYNYMDII-T-NASI------RVGIKAMALSLSLIVFVTIVL 152 (694)
Q Consensus 84 v~~iL~---el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~-~-~~~~------~~~~~~~~~~~~~~~~~~~v~ 152 (694)
...+++ ..+ +..++..++.+.+.+||.++++++.+...+... + .+.. ...+|.++..+++.+++.++.
T Consensus 148 AssV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~ 226 (810)
T TIGR00844 148 AQSVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCG 226 (810)
T ss_pred HHHHHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776 223 467888899999999999998877555433321 1 1111 123455555555566666666
Q ss_pred HHHHHHHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhH-HHHHHhhhhhhhhhhH
Q 038780 153 RRLMFWIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLAST-LVEKLDTIVTGLFLPL 231 (694)
Q Consensus 153 r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~-l~~kl~~~~~~~f~Pl 231 (694)
++++.|..+|... ..+.+..+.++++++++.+++.+|.++++++|++|+++.+..++... -...+..+...++..+
T Consensus 227 ~~Ll~~l~rr~~i---~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~ 303 (810)
T TIGR00844 227 RKAIRFAEGKNII---DRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYA 303 (810)
T ss_pred HHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHH
Confidence 6666666555432 13456667788888899999999999999999999999986432221 1222444555678889
Q ss_pred HHhhhcccccccccccC----Cchh-HHHHHHHHHHHHHHHHHHHHHhh--CCChhHHHHHHHHhhhhhhhhhhhhcccc
Q 038780 232 MATFCGLKSNLRDLSKG----LSYP-LVFGMTIGLFFKLIAVYLPAVWF--NTHSTDAAALSLILTVKGIVELGTFGTNF 304 (694)
Q Consensus 232 FF~~~Gl~~dl~~l~~~----~~~~-~~~ii~~~~~~K~~~~~l~~~~~--~~~~~~~~~lg~~m~~kG~~~li~~~~~~ 304 (694)
+|+..|+.+....+... ..|. +++.+++.++.|..++++...+. ..+++|++++|+ ..+||..++.++.+++
T Consensus 304 lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~ 382 (810)
T TIGR00844 304 YFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSK 382 (810)
T ss_pred HHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHH
Confidence 99999999987666431 1354 45555666778888887764443 368999999999 9999999999999998
Q ss_pred ccCC
Q 038780 305 NKQV 308 (694)
Q Consensus 305 ~~~~ 308 (694)
+.+.
T Consensus 383 ~~~~ 386 (810)
T TIGR00844 383 SQLE 386 (810)
T ss_pred Hhhh
Confidence 7765
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.6e-16 Score=172.88 Aligned_cols=323 Identities=15% Similarity=0.104 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhccHH
Q 038780 4 YSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTSFP 82 (694)
Q Consensus 4 ~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~ 82 (694)
|.+-.+++..++|..|+|+|.+.++|+++..+.++..+++++.+.. ...+++.. +.++..++.+|+++|+|++.
T Consensus 60 el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv 134 (429)
T COG0025 60 ELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPV 134 (429)
T ss_pred HHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCch
Confidence 4555899999999999999999999999999999999999988876 66666532 22578999999999999999
Q ss_pred HHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 83 VVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDII-TNASIR----VGIKAMALSLSLIVFVTIVLRRLMF 157 (694)
Q Consensus 83 vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~v~r~~~~ 157 (694)
++..+.++.+. ..++.++..+.+++||..+++++.+....... +..+.. ..++..+..+++.++..++.+++.+
T Consensus 135 ~v~~i~~~~~v-p~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~ 213 (429)
T COG0025 135 AVSPIFKRVRV-PKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLR 213 (429)
T ss_pred hhHHHHhcCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999775 78999999999999999999999877776553 221111 2234444555556666677777777
Q ss_pred HHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhccc---C--CCCch-hHHHHHHhhhhhhhhhhH
Q 038780 158 WIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVP---T--GPPLA-STLVEKLDTIVTGLFLPL 231 (694)
Q Consensus 158 ~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~---~--~~p~~-~~l~~kl~~~~~~~f~Pl 231 (694)
|+.+|-.. .......+.+...+..+.++|.+|.+++++.+++|+... . ..+.. +...+.+-....-++--+
T Consensus 214 ~~~~~~~~---~~~~~~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~ 290 (429)
T COG0025 214 RLDRRGWT---SPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGL 290 (429)
T ss_pred HHHHcccc---chHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 76665421 134668889999999999999999999999999998774 1 11211 222233434445667778
Q ss_pred HHhhhcccccccccccCCchh-HHHHHHHHHHHHHHHHHHHHHhhC------CChhHHHHHHHHhhhhhhhhhhhhcccc
Q 038780 232 MATFCGLKSNLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVWFN------THSTDAAALSLILTVKGIVELGTFGTNF 304 (694)
Q Consensus 232 FF~~~Gl~~dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~~~------~~~~~~~~lg~~m~~kG~~~li~~~~~~ 304 (694)
.|+..|++++...+... .+. .+++++..+++|++.+++..+..+ .++++++.+++ -++||.++++++....
T Consensus 291 iFiLlG~~i~~~~~~~~-~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p 368 (429)
T COG0025 291 LFVLLGAQLPLSLLLAL-GLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIP 368 (429)
T ss_pred HHHHHHHhhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHch
Confidence 89999999998877654 344 677777888899999999988743 79999999988 8999999999887543
Q ss_pred c-cC-----CCChhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 038780 305 N-KQ-----VRNTGEFTVAVVLILILASIIPIIVRKLHD 337 (694)
Q Consensus 305 ~-~~-----~i~~~~f~~lv~~~lltt~i~~~l~~~l~~ 337 (694)
. .. .+-.-++.+++.++++.+...||+.++...
T Consensus 369 ~~~~~~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 369 LELPGPARELILFIVFLVILFSLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred hhccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Confidence 2 11 222233444455555555556777776654
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.78 E-value=1.7e-16 Score=179.22 Aligned_cols=325 Identities=14% Similarity=0.092 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcc--cCCCchhHHHHHHHHHhhccHH
Q 038780 6 LTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILE--PQEYLDDWIDLFTATTMLTSFP 82 (694)
Q Consensus 6 la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~--~~~~~~~~~l~ig~~ls~Ts~~ 82 (694)
+-.+.+-.++|..|+++|.+.++++.+..+..++.+++++.++. ...+++..... ....++..++++|+++|.|++.
T Consensus 68 f~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPV 147 (559)
T TIGR00840 68 FFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147 (559)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchH
Confidence 33456778999999999999999999999999999999988876 55554322111 1123588999999999999999
Q ss_pred HHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccchHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 83 VVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIIT--NASIRV---GIKAMALSLSLIVFVTIVLRRLMF 157 (694)
Q Consensus 83 vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~v~r~~~~ 157 (694)
.+..++++.+. +.++-.++.+.+++||..+++++.++..+...+ ..+... ....++...+..++++++...+..
T Consensus 148 AVlai~~~~~v-~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~ 226 (559)
T TIGR00840 148 AVLAVFEEYHV-NEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVA 226 (559)
T ss_pred HHHHHHHhcCC-CcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999985 889999999999999999999997776654321 111111 111111111113444555556666
Q ss_pred HHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCC-----CCchhHHHHHHhhhhhhhhhhHH
Q 038780 158 WIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTG-----PPLASTLVEKLDTIVTGLFLPLM 232 (694)
Q Consensus 158 ~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~-----~p~~~~l~~kl~~~~~~~f~PlF 232 (694)
++.|+.... +.....+++++.++++.++|.+|.+++++.+++|+++.+. .+..+.-.+.+-.....+.-.+.
T Consensus 227 ~l~r~~~~~---~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~I 303 (559)
T TIGR00840 227 FITRFTHHI---RQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLI 303 (559)
T ss_pred HHHHHhccc---chhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776432 2345677888888999999999999999999999998642 22222222233333456677888
Q ss_pred HhhhcccccccccccCCchh-HHHHHHHHHHHHHHHHHHHHHh------hCCChhHHHHHHHHhhhhhhhhhhhhccccc
Q 038780 233 ATFCGLKSNLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVW------FNTHSTDAAALSLILTVKGIVELGTFGTNFN 305 (694)
Q Consensus 233 F~~~Gl~~dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~------~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~ 305 (694)
|+..|+.+-... ..+.|. .++.++++++.|.++.+...+. .+.+++|.+.+++ ...||.++++++...-+
T Consensus 304 FvlLGl~l~~~~--~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~ 380 (559)
T TIGR00840 304 FIFLGVSLVTEN--HEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDE 380 (559)
T ss_pred HHHHHHHHhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCC
Confidence 999999763221 112344 3444455567888887766543 3579999999887 77899999988865433
Q ss_pred cCCCChhhH-----HHHHHHHHHHHHHHHHHHHhhcc
Q 038780 306 KQVRNTGEF-----TVAVVLILILASIIPIIVRKLHD 337 (694)
Q Consensus 306 ~~~i~~~~f-----~~lv~~~lltt~i~~~l~~~l~~ 337 (694)
.+.-..+.+ .++++++++.....+|+++++.-
T Consensus 381 ~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~l 417 (559)
T TIGR00840 381 KIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKV 417 (559)
T ss_pred CCcchHHHHHHHHHeeehHHHHHHHhhHHHHHHHhCC
Confidence 222222222 22223334444445788888763
No 15
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.77 E-value=3.4e-16 Score=167.57 Aligned_cols=296 Identities=15% Similarity=0.166 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHhhccChHHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhhccH
Q 038780 8 IFGYIFFMFLIGVKMDLSLIT---KLGKRE---WCISLSLMFNLLLVGMICQTISQILEPQEYLDDWIDLFTATTMLTSF 81 (694)
Q Consensus 8 ~~G~i~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~ 81 (694)
+.=+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++- ..+... .....--+| +-+.|+.
T Consensus 68 DgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy---~~~n~~------~~~~~~GW~-Ip~ATDI 137 (423)
T PRK14853 68 DGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIY---VAVNLA------GGGALRGWA-IPTATDI 137 (423)
T ss_pred HhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHH---HHHhCC------chhhhhhhh-hhhhhHH
Confidence 334567899999999665432 222332 456778888888654 122211 011122333 2345788
Q ss_pred HHHHHHHHhcccc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 82 PVVACFLMHLKII-NSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWII 160 (694)
Q Consensus 82 ~vv~~iL~el~~~-~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~ 160 (694)
+...++|..+|-. ++.++...++.|++||+.+++++++.++ +.. ...+.......+. ++ |+.
T Consensus 138 AFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt----~~i---~~~~L~~a~~~~~--~l--------~~l 200 (423)
T PRK14853 138 AFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT----SEL---NLEALLLALVPLA--LF--------WLL 200 (423)
T ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC----CCC---CHHHHHHHHHHHH--HH--------HHH
Confidence 8889999998864 8899999999999999999999988772 111 2222222222111 11 223
Q ss_pred HHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCC-----------CchhHHHHHHhhhhhhhhh
Q 038780 161 RRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGP-----------PLASTLVEKLDTIVTGLFL 229 (694)
Q Consensus 161 ~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~-----------p~~~~l~~kl~~~~~~~f~ 229 (694)
++.+ +++.+.+.++. +++.+..+..|+|+.+|+|++|+++|..+ +..++++++++++++.+++
T Consensus 201 ~~~~----V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~IL 274 (423)
T PRK14853 201 VQKR----VRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAV 274 (423)
T ss_pred HHcC----CchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 3332 34455566653 46788899999999999999999999521 3357899999999999999
Q ss_pred hHH-Hhhhcccccc-cccccCCc-hhHHHHHHHHHHHHHHHHHHHHHhh----------CCChhHHHHHHHHhhhhhhhh
Q 038780 230 PLM-ATFCGLKSNL-RDLSKGLS-YPLVFGMTIGLFFKLIAVYLPAVWF----------NTHSTDAAALSLILTVKGIVE 296 (694)
Q Consensus 230 PlF-F~~~Gl~~dl-~~l~~~~~-~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~ 296 (694)
|+| |+..|.++|. ..+.+... -....+++..++||.+|.+..++.. +++|++-..+|++-..-=.++
T Consensus 275 PLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFTmS 354 (423)
T PRK14853 275 PVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTVS 354 (423)
T ss_pred HHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999 9999999986 43411111 1255677778889999888777653 578999999998777778899
Q ss_pred hhhhccccc-cC-CCChhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 038780 297 LGTFGTNFN-KQ-VRNTGEFTVAVVLILILASIIPIIVRKLHD 337 (694)
Q Consensus 297 li~~~~~~~-~~-~i~~~~f~~lv~~~lltt~i~~~l~~~l~~ 337 (694)
+.+++.+++ .. .+++.-.. +.+..+++.+++-.+++...+
T Consensus 355 lFI~~LAf~~~~~~~~~aKig-il~~S~~s~~~G~~~l~~~~~ 396 (423)
T PRK14853 355 LLIGELAFGGGSARDDAVKVG-VLTGSLIAALLASVLLRLRNR 396 (423)
T ss_pred HHHHHhhcCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Confidence 999999994 22 23322222 334445555555555555443
No 16
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.7e-16 Score=161.50 Aligned_cols=320 Identities=14% Similarity=0.070 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhccHH
Q 038780 4 YSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTSFP 82 (694)
Q Consensus 4 ~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~ 82 (694)
..++++++++++|..|+..+++.+|...++++..+.+|++++..+. .+++|+... .|.+++++|++...|.-+
T Consensus 61 y~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAA 134 (574)
T COG3263 61 YMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAA 134 (574)
T ss_pred HHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHH
Confidence 5688999999999999999999999999999999999999988876 555554332 489999999999999999
Q ss_pred HHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 83 VVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNAS-IRVGIKAMALSLSLIVFVTIVLRRLMFWIIR 161 (694)
Q Consensus 83 vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~ 161 (694)
.|..+|.++++ |.+.+.+.--.+--||-.++++...+..+...+..+ .+..+..++.-+.+.++..+....+..|+++
T Consensus 135 AVF~lL~~~nl-~erv~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~In 213 (574)
T COG3263 135 AVFSLLGGKNL-NERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLIN 213 (574)
T ss_pred HHHHHHccCCh-hhhhhhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999988885 788888888888899999887765444443332111 1223333556667777888888889999999
Q ss_pred HCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCc-hhHHHHHHhhhhhhhhhhHHHhhhcccc
Q 038780 162 RTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPL-ASTLVEKLDTIVTGLFLPLMATFCGLKS 240 (694)
Q Consensus 162 ~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~-~~~l~~kl~~~~~~~f~PlFF~~~Gl~~ 240 (694)
|..- -+..|..++++..++...+++.+|-++++..+++|+.+.|.+-. .+.+.+-.+.+. ++.--+.|...|+.+
T Consensus 214 r~nL---d~GL~pil~la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~t-wlaQI~MFlvLGLLv 289 (574)
T COG3263 214 RINL---DSGLYPILALAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLA-WLAQILMFLVLGLLV 289 (574)
T ss_pred hhcc---ccchhHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHH-HHHHHHHHHHHHHhc
Confidence 9742 24678899999999999999999999999999999999998533 345666666664 555666677899999
Q ss_pred cccccccCCchh-HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChh-hHHHHH
Q 038780 241 NLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTG-EFTVAV 318 (694)
Q Consensus 241 dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~-~f~~lv 318 (694)
+++++... ... .++.+.+.++.|.++.|+...-++.+++|.+.+++ -.-||.+.++++....-.|+=+.+ .|++.-
T Consensus 290 tPsql~~i-avPailL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF 367 (574)
T COG3263 290 TPSQLLPI-AIPAILLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAF 367 (574)
T ss_pred CHhhhhHh-hHHHHHHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhH
Confidence 98887653 233 56666777889999999999889999999999988 889999999999988887776544 455555
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 038780 319 VLILILASIIPIIVRKLH 336 (694)
Q Consensus 319 ~~~lltt~i~~~l~~~l~ 336 (694)
+.++++..+-...+.+..
T Consensus 368 ~VVLvSlliQG~tl~~~a 385 (574)
T COG3263 368 FVVLVSLLIQGSTLPWAA 385 (574)
T ss_pred HHHHHHHHHccCcchHHH
Confidence 555555555444444443
No 17
>PRK11175 universal stress protein UspE; Provisional
Probab=99.72 E-value=2.2e-16 Score=167.37 Aligned_cols=272 Identities=13% Similarity=0.078 Sum_probs=166.5
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhC-C
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEH-P 438 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~ 438 (694)
|||+|++.+++...+++.+..++. ....+++++|+++......+....... .........++..+.++++.+.. .
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQ--RNGGKITAFLPIYDFSYEMTTLLSPDE--REAMRQGVISQRTAWIREQAKPYLD 80 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHH--hcCCCEEEEEeccCchhhhhcccchhH--HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 699999999999999999999984 344679999987633211110000000 00000000011112222222211 1
Q ss_pred CceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCCCCC
Q 038780 439 KFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIHG 518 (694)
Q Consensus 439 ~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~~ 518 (694)
.+++++..+... .+.++.|++.|+++++||||+|+|++....+. .+++..+++++++||||.++.++.
T Consensus 81 ~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~------~~gs~~~~l~~~~~~pvlvv~~~~---- 148 (305)
T PRK11175 81 AGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV------IFTPTDWHLLRKCPCPVLMVKDQD---- 148 (305)
T ss_pred cCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh------ccChhHHHHHhcCCCCEEEecccc----
Confidence 456676654433 68899999999999999999999987544333 345578999999999998875532
Q ss_pred CCccccCCceeEEEEeccCCcch-------HHHHHHHHHHHhCC-CeEEEEEEEeecCCc---------CccccccchH-
Q 038780 519 PSSIFVAPFVYRLAVLYMGGEDD-------MEALAYARRMARSS-RVHLTVIHFTLSKES---------GYARWTNTID- 580 (694)
Q Consensus 519 ~~~~~~~~~~~~I~~~f~gg~dd-------reAl~~a~rma~~~-~v~ltv~~~~~~~~~---------~~~~~e~~~d- 580 (694)
+. ..++|+++..|+++. ..|+++|.++|+.. +++++++++.+.... ..++.++...
T Consensus 149 ~~------~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (305)
T PRK11175 149 WP------EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRG 222 (305)
T ss_pred cC------CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHH
Confidence 11 146899999998653 67999999999998 999999998753210 0001111111
Q ss_pred --HHHHHHhhhcccccCCCcEEEEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhh
Q 038780 581 --DEFLNGLKKNDEILGNLNIIYKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIG 655 (694)
Q Consensus 581 --~~~i~~~~~~~~~~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~ig 655 (694)
++.++++..... .. ..+..+..| +++.+..++ .+.||+++|+++.. |+.+ -=+|-..
T Consensus 223 ~~~~~l~~~~~~~~---~~---~~~~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~~~~------~~~~----~llGS~a 284 (305)
T PRK11175 223 QHLLAMKALRQKFG---ID---EEQTHVEEGLPEEVIPDLAEH--LDAELVILGTVGRT------GLSA----AFLGNTA 284 (305)
T ss_pred HHHHHHHHHHHHhC---CC---hhheeeccCCHHHHHHHHHHH--hCCCEEEECCCccC------CCcc----eeecchH
Confidence 123444433321 11 111222333 234455555 68999999998642 2222 3467777
Q ss_pred hhhhcCCCCCceeEEEEee
Q 038780 656 DLFASSDITASISILVIQQ 674 (694)
Q Consensus 656 d~las~~~~~~~SvLvvqq 674 (694)
+-++.. .+.+||||..
T Consensus 285 ~~v~~~---~~~pVLvv~~ 300 (305)
T PRK11175 285 EHVIDH---LNCDLLAIKP 300 (305)
T ss_pred HHHHhc---CCCCEEEEcC
Confidence 777764 7789999964
No 18
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.59 E-value=5.9e-14 Score=147.60 Aligned_cols=265 Identities=15% Similarity=0.134 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHhhccChHHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhh-cc
Q 038780 8 IFGYIFFMFLIGVKMDLSLIT---KLGKRE---WCISLSLMFNLLLVGMICQTISQILEPQEYLDDWIDLFTATTML-TS 80 (694)
Q Consensus 8 ~~G~i~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~-Ts 80 (694)
+.=+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++- ..+.. .++ ...--+|+-+++ ++
T Consensus 58 DgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy---~~~n~-~~~-----~~~~GW~IP~ATDiA 128 (373)
T TIGR00773 58 DGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIY---LAFNA-NDP-----ITREGWAIPAATDIA 128 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH---hheec-CCC-----cccCccccccHHHHH
Confidence 334567889999999888764 333443 455677788887653 11211 110 011122222222 33
Q ss_pred HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 81 FPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWII 160 (694)
Q Consensus 81 ~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~ 160 (694)
|.+-..-+--.+ ....+....++-|++||+.+++++++.++- .....+......++.+ . ++.
T Consensus 129 FalgvlallG~~-vP~~lr~FLl~LAIvDDlgaI~vIA~FYt~-------~i~~~~L~~a~~~~~~-l---------~~~ 190 (373)
T TIGR00773 129 FALGVMALLGKR-VPLALKIFLLALAIIDDLGAIVIIALFYTN-------DLSMAALLVAAVAIAV-L---------AVL 190 (373)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHhheeeecCC-------CCCHHHHHHHHHHHHH-H---------HHH
Confidence 444433332223 355667889999999999999988776631 1123333333322221 1 233
Q ss_pred HHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCch----hHHHHHHhhhhhhhhhhHH-Hhh
Q 038780 161 RRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLA----STLVEKLDTIVTGLFLPLM-ATF 235 (694)
Q Consensus 161 ~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~----~~l~~kl~~~~~~~f~PlF-F~~ 235 (694)
+|.. +++...+.++..++ .+++ ...|+|+.+|+|++|+++|+.++.. +++++.+++.++.+++|+| |+.
T Consensus 191 ~~~~----v~~~~~y~~lgvll-W~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFan 264 (373)
T TIGR00773 191 NRCG----VRRLGPYMLVGVIL-WFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFAN 264 (373)
T ss_pred HHcC----CchhhHHHHHHHHH-HHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4432 23334444443333 2333 7999999999999999999864443 4455555566888999999 999
Q ss_pred hcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhh----------CCChhHHHHHHHHhhhhhhhhhhhhccccc
Q 038780 236 CGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWF----------NTHSTDAAALSLILTVKGIVELGTFGTNFN 305 (694)
Q Consensus 236 ~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~li~~~~~~~ 305 (694)
.|.++|...+.....+....+++..+++|.+|++..++.. +++|++-..+|++-..-=.+++.+.+.+++
T Consensus 265 AGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 265 AGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLAFG 344 (373)
T ss_pred cCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999987555332233466777888899999998888763 578899999988777777899999998884
No 19
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.45 E-value=7e-13 Score=121.92 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=99.2
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCCC
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHPK 439 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 439 (694)
|||||++++++...+++.+..+++. .+.+++++|+++.+....+. ... ......++.++.+.+..++ .
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~--~ 68 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSPS---QLE-----VNVQRARKLLRQAERIAAS--L 68 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCcc---hhH-----HHHHHHHHHHHHHHHHhhh--c
Confidence 6999999999999999999999954 56789999999976543210 000 0112345566666666554 4
Q ss_pred ceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 440 FVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 440 ~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
++++++.+..+ .++.++||+.|+++++|+||||.|+++...+. .+|+++++|++++||||+++
T Consensus 69 g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~------~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 69 GVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR------LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred CCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce------ecCchHHHHHhcCCCCEEEe
Confidence 56777777666 68999999999999999999999988765333 35568999999999999876
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.25 E-value=6.1e-10 Score=119.27 Aligned_cols=294 Identities=13% Similarity=0.102 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHhhccChHHHHh---cchhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhh-
Q 038780 6 LTIFGYIFFMFLIGVKMDLSLITK---LGKRE---WCISLSLMFNLLLVGMICQTISQILEPQEYLDDWIDLFTATTML- 78 (694)
Q Consensus 6 la~~G~i~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~- 78 (694)
+.+.=+.+|.|.+|+|+..+.+.. +.||+ ..-++.|+++|.++- ..+.. .+ ...--+|+-+++
T Consensus 72 INDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY---~~~n~-~~------~~~~GWgIPmATD 141 (438)
T PRK14856 72 IDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIY---FFLNA-DT------PSQHGFGIPMATD 141 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHH---hheec-CC------CccCccccccHHH
Confidence 344456788999999998877642 33443 445677788887543 12221 11 012223333332
Q ss_pred ccHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 79 TSFPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFW 158 (694)
Q Consensus 79 Ts~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~ 158 (694)
++|.+.+--+--.+ ..+.+....++-|++||+.+++++++.++- .....|..+...++.++ +
T Consensus 142 IAFAlgvLallG~r-vP~~LrvFLlaLAIvDDlgAI~VIAlFYt~-------~i~~~~L~~a~~~~~~l----------~ 203 (438)
T PRK14856 142 IAFALGVIMLLGKR-VPTALKVFLITLAVADDLGAIVVIALFYTT-------NLKFAWLLGALGVVLVL----------A 203 (438)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhHhheeeecCC-------CCcHHHHHHHHHHHHHH----------H
Confidence 33333322222222 345677889999999999999988876631 12334444433322211 2
Q ss_pred HHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCc--------------------------
Q 038780 159 IIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPL-------------------------- 212 (694)
Q Consensus 159 ~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~-------------------------- 212 (694)
+.+|.. ++....+.++.. +..+....-|+|+.++..++|+++|..++.
T Consensus 204 ~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T PRK14856 204 VLNRLN----VRSLIPYLLLGV--LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKE 277 (438)
T ss_pred HHHHcC----CccccHHHHHHH--HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccc
Confidence 233332 233334444443 445556789999999999999999975322
Q ss_pred ------------------hhHHHHHHhhhhhhhhhhHH-HhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 038780 213 ------------------ASTLVEKLDTIVTGLFLPLM-ATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAV 273 (694)
Q Consensus 213 ------------------~~~l~~kl~~~~~~~f~PlF-F~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 273 (694)
.+++++.+.+.++.+.+|+| |+..|..++....... .-+...+++..++||.+|.+..++
T Consensus 278 ~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~-~pv~lGI~~GLvvGK~lGI~~~s~ 356 (438)
T PRK14856 278 QQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEV-DKVLLGVILGLCLGKPLGIFLITF 356 (438)
T ss_pred hhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhcc-CcHHHHHHHHHHhcchHHHHHHHH
Confidence 13466677777888999999 8899999875422211 112455667778899888887776
Q ss_pred hh----------CCChhHHHHHHHHhhhhhhhhhhhhcccccc--C-CCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 038780 274 WF----------NTHSTDAAALSLILTVKGIVELGTFGTNFNK--Q-VRNTGEFTVAVVLILILASIIPIIVRKL 335 (694)
Q Consensus 274 ~~----------~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~--~-~i~~~~f~~lv~~~lltt~i~~~l~~~l 335 (694)
.. +++|++-..+|.+-..-=.+++.+++.+++. . ..++.-. .+++..+++.+++..++++.
T Consensus 357 lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKi-gIL~gS~lsai~G~~~L~~~ 430 (438)
T PRK14856 357 ISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKI-AILLGSLISGIIGALYLFAL 430 (438)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 53 5788999999887777778999999999843 2 3333222 33344555555555555543
No 21
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.25 E-value=6.2e-10 Score=112.52 Aligned_cols=292 Identities=12% Similarity=0.061 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhccHHH
Q 038780 5 SLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTSFPV 83 (694)
Q Consensus 5 ~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~v 83 (694)
.++.+=+..=.|.+++|+--..+.++++..++.-+--+++-++.. .+.|.+.... +...++.++.+++.|.+..
T Consensus 73 ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~l-----nf~~Sl~iaaCiTaTDPiL 147 (467)
T KOG4505|consen 73 EISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNL-----NFLTSLLIAACITATDPIL 147 (467)
T ss_pred hhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHHHccCCchhH
Confidence 456666777889999999999999999887665443333344444 4444443222 4788999999999999777
Q ss_pred HHHHHHhcccccC---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cch---HHHHHHHHHHHHHHHHHHHHHH
Q 038780 84 VACFLMHLKIINS---ELGHFALSTALLCDLQSVILVNSYNYMDIITN----ASI---RVGIKAMALSLSLIVFVTIVLR 153 (694)
Q Consensus 84 v~~iL~el~~~~s---~~g~lals~a~i~Di~~~ill~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~v~r 153 (694)
...+..+-+..+. ++..+..+.+..||..++.++.+...+...+. +.. ...++-....+.+..++.++.|
T Consensus 148 sssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r 227 (467)
T KOG4505|consen 148 SSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSR 227 (467)
T ss_pred HHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776555544 55557888899999999988876655543221 111 1233334444556667778888
Q ss_pred HHHHHHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHH-HHhhhhhhhhhhHH
Q 038780 154 RLMFWIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVE-KLDTIVTGLFLPLM 232 (694)
Q Consensus 154 ~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~-kl~~~~~~~f~PlF 232 (694)
..++.-.|+.--+ .|+++.+-+++.+.|+.+.+.+|.+..+-.|.||.+++-...+.++..| ++..+..-++--.|
T Consensus 228 ~~lk~aekkrlid---~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sf 304 (467)
T KOG4505|consen 228 QGLKFAEKKRLID---RESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSF 304 (467)
T ss_pred HHHHHHHHhcccc---HHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHH
Confidence 7777666654332 4788888899999999999999999999999999999987666655443 56667766777889
Q ss_pred HhhhcccccccccccCC----chhHHHHHHHHHHH-HHHHHHHHHHhh--CCChhHHHHHHHHhhhhhhhhhhhhccccc
Q 038780 233 ATFCGLKSNLRDLSKGL----SYPLVFGMTIGLFF-KLIAVYLPAVWF--NTHSTDAAALSLILTVKGIVELGTFGTNFN 305 (694)
Q Consensus 233 F~~~Gl~~dl~~l~~~~----~~~~~~ii~~~~~~-K~~~~~l~~~~~--~~~~~~~~~lg~~m~~kG~~~li~~~~~~~ 305 (694)
|.+.|..++.+.++... .|-.+++.+..++. |..++++.-.+. =.+|||++.+|- ..+.|.-++..+..+..
T Consensus 305 F~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 305 FLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred HHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 99999999998886431 23334444444443 444444332221 147999999998 88888888887776643
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.25 E-value=7.6e-10 Score=116.83 Aligned_cols=263 Identities=14% Similarity=0.108 Sum_probs=162.6
Q ss_pred HHHHHHHHHhhccChHHHHh---cchhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhh-ccHH
Q 038780 10 GYIFFMFLIGVKMDLSLITK---LGKRE---WCISLSLMFNLLLVGMICQTISQILEPQEYLDDWIDLFTATTML-TSFP 82 (694)
Q Consensus 10 G~i~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~-Ts~~ 82 (694)
=+.+|.|.+|+|+..+.+.. +.||+ +.-++.|+++|.++- ..+.. ..+ ...--+|+-+++ ++|.
T Consensus 67 LMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy---~~~n~-g~~-----~~~~GWgIPmATDIAFA 137 (389)
T PRK09560 67 LMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIY---AAFNY-NNP-----ETLRGWAIPAATDIAFA 137 (389)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH---heeec-CCC-----cccCccccccHHHHHHH
Confidence 35678899999998877642 33443 455677788887653 11211 100 001122222222 2232
Q ss_pred HHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 83 VVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWIIRR 162 (694)
Q Consensus 83 vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~ 162 (694)
+-.--+--.+ ....+....++-|++||+.+++++++.++- .....|......++.++ ++.+|
T Consensus 138 lgvL~llG~r-vP~~Lr~FLlaLAIvDDlgAI~VIA~FYt~-------~i~~~~L~~a~~~~~~l----------~~ln~ 199 (389)
T PRK09560 138 LGVLALLGKR-VPVSLKVFLLALAIIDDLGAIVIIALFYTS-------DLSLPALALAAIAIAVL----------FLLNR 199 (389)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecCC-------CCCHHHHHHHHHHHHHH----------HHHHH
Confidence 2221121112 355667888999999999999988776631 12233333333222211 22334
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCc------hhHHHHHHhhhhhhhhhhHH-Hhh
Q 038780 163 TPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPL------ASTLVEKLDTIVTGLFLPLM-ATF 235 (694)
Q Consensus 163 ~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~------~~~l~~kl~~~~~~~f~PlF-F~~ 235 (694)
.. ++....+.++.. +..+.-..-|+|+.++..++|+++|..++. .+++++++++.++.+.+|+| |+.
T Consensus 200 ~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAlaN 273 (389)
T PRK09560 200 LG----VTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAFAN 273 (389)
T ss_pred cC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHhhc
Confidence 32 233344555443 345555689999999999999999975322 35688899999988889999 788
Q ss_pred hcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhh----------CCChhHHHHHHHHhhhhhhhhhhhhccccc
Q 038780 236 CGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWF----------NTHSTDAAALSLILTVKGIVELGTFGTNFN 305 (694)
Q Consensus 236 ~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~li~~~~~~~ 305 (694)
.|..++-..+..........+++..++||.+|.++.++.. +++|++-..+|.+-..-=.+++.+++.++.
T Consensus 274 AGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 353 (389)
T PRK09560 274 AGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIGSLAFG 353 (389)
T ss_pred CCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8988843223221112245566677789988888777653 578899999988777778899999999884
No 23
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.20 E-value=2.5e-10 Score=124.74 Aligned_cols=317 Identities=12% Similarity=0.067 Sum_probs=198.2
Q ss_pred HHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHH-HHHHHHHhhhcccCCCchhHHHHHHHHHhhccHHHHHHHHHhcc
Q 038780 14 FMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLV-GMICQTISQILEPQEYLDDWIDLFTATTMLTSFPVVACFLMHLK 92 (694)
Q Consensus 14 llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~-g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~el~ 92 (694)
+.|..|.+++.+.+.++......+++.|..++..+ |...++++....+....+.+++.+|+++|.|.+..+..+++|++
T Consensus 109 iif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~ 188 (575)
T KOG1965|consen 109 IIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG 188 (575)
T ss_pred hhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC
Confidence 56899999999999999999999999887776654 43334443322223346899999999999999999999999998
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q 038780 93 IINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRV---GI----KAMALSLSLIVFVTIVLRRLMFWIIRRTPE 165 (694)
Q Consensus 93 ~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~ 165 (694)
. ..++=.++-|.+++||..+++++..+........ +.+. .+ ..+....+.++...++.-.+ .|...-
T Consensus 189 v-d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~-~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~----lK~~~l 262 (575)
T KOG1965|consen 189 V-DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSL-NDWTAFSAIGNFLYTFFGSLGLGVAIGLISALV----LKFLYL 262 (575)
T ss_pred C-CcceeeeeecchhccchhHHHHHHHHHHHccCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 5 5677789999999999999999987776543321 1111 11 12222222222222232222 222221
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCC-----CchhHHHHHHhhhhhhhhhhHHHhhhccc-
Q 038780 166 GKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGP-----PLASTLVEKLDTIVTGLFLPLMATFCGLK- 239 (694)
Q Consensus 166 ~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~-----p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~- 239 (694)
++ ....+..+++.+....+++||.+|+++++.-+..|+.+.+-. +.++.-.+.+-.+..-+---+-|+++|+.
T Consensus 263 ~~-~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~ 341 (575)
T KOG1965|consen 263 RR-TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSA 341 (575)
T ss_pred cC-CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11 234568888889999999999999999999999999998742 22222223222233334445669999963
Q ss_pred ccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhC----------CChhHHHHHHHHhhhhhhhhhhhhcccc-cc--
Q 038780 240 SNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFN----------THSTDAAALSLILTVKGIVELGTFGTNF-NK-- 306 (694)
Q Consensus 240 ~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~----------~~~~~~~~lg~~m~~kG~~~li~~~~~~-~~-- 306 (694)
++.........+.++...++.+++|..-.+-.+.+.+ .|.++-..+.+.-.-||.+.++++.--. +.
T Consensus 342 f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~ 421 (575)
T KOG1965|consen 342 FDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPH 421 (575)
T ss_pred hcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhcccccc
Confidence 3333332211112344445556666555444444332 3444455565545579999988875221 11
Q ss_pred ---CCCChhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 038780 307 ---QVRNTGEFTVAVVLILILASIIPIIVRKLHD 337 (694)
Q Consensus 307 ---~~i~~~~f~~lv~~~lltt~i~~~l~~~l~~ 337 (694)
+.+-..+..++++.+++-...+.|+++++-.
T Consensus 422 ~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 422 TGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred ccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 2222233334444444555568899999873
No 24
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.17 E-value=2.9e-09 Score=112.26 Aligned_cols=263 Identities=16% Similarity=0.131 Sum_probs=161.5
Q ss_pred HHHHHHHHHhhccChHHHHh---cchhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhh-ccHH
Q 038780 10 GYIFFMFLIGVKMDLSLITK---LGKRE---WCISLSLMFNLLLVGMICQTISQILEPQEYLDDWIDLFTATTML-TSFP 82 (694)
Q Consensus 10 G~i~llF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~-Ts~~ 82 (694)
=+.+|.|.+|+|+..+.+.. +.||+ ..-++.|+++|.++- ..+.. ..+ ...--+|+-+++ ++|.
T Consensus 67 LMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy---~~~n~-~~~-----~~~~GWaIP~ATDIAFa 137 (388)
T PRK09561 67 LMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIY---LLFNY-ADP-----VTREGWAIPAATDIAFA 137 (388)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHH---hheec-CCC-----cccCccccccHHHHHHH
Confidence 35678899999998887642 33443 455677788887653 11211 000 001122222221 2232
Q ss_pred HHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 83 VVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWIIRR 162 (694)
Q Consensus 83 vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~ 162 (694)
+-.--+--.+ ....+....++-|++||+.+++++++.++- ...+.+..+...++. ++ ++.+|
T Consensus 138 lgvlallG~r-vP~~LrvFLlaLAIvDDlgAI~VIAlFYt~-------~i~~~~L~~a~~~~~--~l--------~~ln~ 199 (388)
T PRK09561 138 LGVLALLGSR-VPVALKIFLLALAIIDDLGAIVIIALFYTS-------DLSMVSLGVAAVAIA--VL--------AVLNL 199 (388)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHhhhHhheeeecCC-------CccHHHHHHHHHHHH--HH--------HHHHH
Confidence 2222221222 355667888999999999999988876631 112333333332222 11 22334
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCc----hhHHHHHHhhhhhhhhhhHH-Hhhhc
Q 038780 163 TPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPL----ASTLVEKLDTIVTGLFLPLM-ATFCG 237 (694)
Q Consensus 163 ~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~----~~~l~~kl~~~~~~~f~PlF-F~~~G 237 (694)
.. ++....+.++.. +..+....-|+|+.++..+.|+++|...+. .+++++++++.++.+.+|+| |+..|
T Consensus 200 ~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaNAG 273 (388)
T PRK09561 200 CG----VRRTSVYILVGV--VLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFANAG 273 (388)
T ss_pred cC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhcCC
Confidence 32 233344555443 345555689999999999999999974322 35788899999988899999 78888
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhh----------CCChhHHHHHHHHhhhhhhhhhhhhccccc
Q 038780 238 LKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWF----------NTHSTDAAALSLILTVKGIVELGTFGTNFN 305 (694)
Q Consensus 238 l~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~li~~~~~~~ 305 (694)
..++-..+.....-....+++..++||.+|.+..++.. +++|++-..+|.+-..-=.+++.+++.+++
T Consensus 274 V~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 274 VSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASLAFG 351 (388)
T ss_pred eeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88832222211111245566667789988887777653 478899999988777777889999998885
No 25
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.15 E-value=2.6e-09 Score=114.01 Aligned_cols=260 Identities=15% Similarity=0.068 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhhccChHHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhh-cc
Q 038780 8 IFGYIFFMFLIGVKMDLSLIT---KLGKRE---WCISLSLMFNLLLVGMICQTISQILEPQEYLDDWIDLFTATTML-TS 80 (694)
Q Consensus 8 ~~G~i~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~-Ts 80 (694)
+-=+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++- ..+.. .++ ..--+|+-+++ ++
T Consensus 69 DgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy---~~~n~-~~~------~~~GWgIPmATDIA 138 (423)
T PRK14855 69 DGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALY---TALNA-GGP------GASGWGVPMATDIA 138 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHH---heeec-CCC------ccCccccccHHHHH
Confidence 334567889999999888764 233443 445677788887543 11211 110 12233333332 33
Q ss_pred HHHHHHHHHhccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 81 FPVVACFLMHLKI-INSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWI 159 (694)
Q Consensus 81 ~~vv~~iL~el~~-~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~ 159 (694)
|.+-.--+ +|- ....+....++-|++||+.+++++++.++- + ....+..+...++.+ . ++
T Consensus 139 FAlgvLal--lG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~------~-i~~~~L~~a~~~~~~-l---------~~ 199 (423)
T PRK14855 139 FALGVLAL--LGSRVPLGLKVFLTALAIVDDLGAVLVIALFYTS------G-LNLLALLLAALTWAL-A---------LL 199 (423)
T ss_pred HHHHHHHH--hcCCCCHHHHHHHHHHHHHhhhhhheeeEeecCC------C-CCHHHHHHHHHHHHH-H---------HH
Confidence 33332222 332 344677889999999999999888776631 1 123333333322221 1 22
Q ss_pred HHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCC-c--------------------------
Q 038780 160 IRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPP-L-------------------------- 212 (694)
Q Consensus 160 ~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p-~-------------------------- 212 (694)
.+|.. ++....++++.+ +..+....-|+|+.++..++|+++|..++ .
T Consensus 200 ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (423)
T PRK14855 200 AGRLG----VTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRDL 273 (423)
T ss_pred HHHcC----CccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHhh
Confidence 33432 233344444443 34555568999999999999999997511 1
Q ss_pred ----------hhHHHHHHhhhhhhhhhhHH-HhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhh------
Q 038780 213 ----------ASTLVEKLDTIVTGLFLPLM-ATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWF------ 275 (694)
Q Consensus 213 ----------~~~l~~kl~~~~~~~f~PlF-F~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~------ 275 (694)
.+++++++.+.++.+.+|+| |+..|..++-.. ..+ +...+++..++||.+|.++.++..
T Consensus 274 ~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~p---v~lGI~~GLvvGK~lGI~~~s~lavkl~~a 349 (423)
T PRK14855 274 EDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LGT---VSLGVFLGLLLGKPLGVVGGAWLAVRLGLA 349 (423)
T ss_pred hhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CCc---HHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Confidence 24577778888888899999 788888884322 111 245566677789988888777653
Q ss_pred ----CCChhHHHHHHHHhhhhhhhhhhhhcccccc
Q 038780 276 ----NTHSTDAAALSLILTVKGIVELGTFGTNFNK 306 (694)
Q Consensus 276 ----~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~ 306 (694)
+++|++-..+|.+-..-=.+++.+++.+++.
T Consensus 350 ~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 384 (423)
T PRK14855 350 SLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD 384 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5789999999987777788999999999853
No 26
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.14 E-value=8.2e-09 Score=108.52 Aligned_cols=263 Identities=13% Similarity=0.107 Sum_probs=161.3
Q ss_pred HHHHHHHHhhccChHHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhh-ccHHH
Q 038780 11 YIFFMFLIGVKMDLSLIT---KLGKRE---WCISLSLMFNLLLVGMICQTISQILEPQEYLDDWIDLFTATTML-TSFPV 83 (694)
Q Consensus 11 ~i~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~-Ts~~v 83 (694)
+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++- ..+... + . ..--+|+-+++ ++|.+
T Consensus 65 MaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy---~~~n~~-~-~-----~~~GW~IP~ATDIAFAl 134 (383)
T PRK14854 65 MAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIY---LSINHD-I-K-----VINGWAIPSATDIAFTL 134 (383)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH---HhhccC-C-c-----ccCccccccHHHHHHHH
Confidence 467889999999877654 333443 455677888888654 112111 1 0 01122222222 33444
Q ss_pred HHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q 038780 84 VACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWIIRRT 163 (694)
Q Consensus 84 v~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~ 163 (694)
-..-+--.+ ....+.-..++-|++||+.+++++++.++ + + ..+.+......++. ++++ +.|+.
T Consensus 135 gvLallG~r-vP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~--~-i~~~~L~~A~~~~~--~l~~-------~nr~~ 197 (383)
T PRK14854 135 GILALLGTR-VPAKLKLLVITIAIFDDIAAIAIIAIFYT----K--S-LSLLSLSLGTLFIL--AMII-------CNRIF 197 (383)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHhhhhHhheeeecC----C--C-ccHHHHHHHHHHHH--HHHH-------HHHhc
Confidence 333222222 35566677888899999999988877663 1 1 12233322222111 1111 12221
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCc----hhHHHHHHhhhhhhhhhhHH-Hhhhcc
Q 038780 164 PEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPL----ASTLVEKLDTIVTGLFLPLM-ATFCGL 238 (694)
Q Consensus 164 ~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~----~~~l~~kl~~~~~~~f~PlF-F~~~Gl 238 (694)
. ++....+.++. ++..+....-|+|+.++..+.|+++|..++. .+++++++++.++.+.+|+| |+..|.
T Consensus 198 ~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aNAGV 271 (383)
T PRK14854 198 K----INRSSVYVVLG--FFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFANAGI 271 (383)
T ss_pred C----CceehHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhcCCe
Confidence 1 23333444443 3445556789999999999999999974221 35688888899999999999 888888
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhh----------CCChhHHHHHHHHhhhhhhhhhhhhcccccc
Q 038780 239 KSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWF----------NTHSTDAAALSLILTVKGIVELGTFGTNFNK 306 (694)
Q Consensus 239 ~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~ 306 (694)
.++-..+..........+++..++||.+|.+..++.. +++|++-..+|++-..-=.+++.+++.+++.
T Consensus 272 ~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~~ 349 (383)
T PRK14854 272 SFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVLAFND 349 (383)
T ss_pred eeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 8842223221111245566677789988887777653 4788999999987777788999999999853
No 27
>PRK15005 universal stress protein F; Provisional
Probab=99.11 E-value=6e-10 Score=104.23 Aligned_cols=137 Identities=18% Similarity=0.071 Sum_probs=87.3
Q ss_pred eEEEEeecCCC--hHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhC
Q 038780 360 RILVCTHRQDD--ALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEH 437 (694)
Q Consensus 360 rILv~v~~~~~--~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 437 (694)
|||+|+|.+++ ...+++.+..++. ....+++++|+++.............. ..+......++..+.++++.++.
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~--~~~~~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ 79 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAK--IDDAEVHFLTVIPSLPYYASLGLAYSA--ELPAMDDLKAEAKSQLEEIIKKF 79 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHh--ccCCeEEEEEEEccCcccccccccccc--cchHHHHHHHHHHHHHHHHHHHh
Confidence 69999999998 4688888888873 345789999999853221110000000 00000011222334455554432
Q ss_pred C-CceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 438 P-KFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 438 ~-~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
. .+++++..+.. .+..+.|++.|+++++||||||.|+ .+..+. .+|++.++|++++||||.++
T Consensus 80 ~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~------llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 80 KLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHR-PDITTY------LLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred CCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCC-CCchhe------eecchHHHHHHhCCCCEEEe
Confidence 2 34556655443 6889999999999999999999884 333333 34558899999999998775
No 28
>PRK15456 universal stress protein UspG; Provisional
Probab=99.08 E-value=4.6e-10 Score=104.98 Aligned_cols=135 Identities=10% Similarity=0.041 Sum_probs=88.4
Q ss_pred eEEEEeecCC--ChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhC
Q 038780 360 RILVCTHRQD--DALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEH 437 (694)
Q Consensus 360 rILv~v~~~~--~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 437 (694)
|||+|+|.++ +...+++.+..++.. . .+++++|+++..... .. ...............++..+.++++.++.
T Consensus 4 ~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK15456 4 TIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASL-SL--HRFAADVRRFEEHLQHEAEERLQTMVSHF 77 (142)
T ss_pred cEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCcccc-cc--cccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 7999999984 899999999988742 3 479999998743211 10 00000000000001122333444444332
Q ss_pred C-CceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 438 P-KFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 438 ~-~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
. ..+++++.+.. .+..+.|++.|+++++||||||.|++. ..+. .+|++.++|++++||||.|+
T Consensus 78 ~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~------llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 78 TIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-ISTH------LLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred CCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-ccce------ecCccHHHHHHcCCCCEEEe
Confidence 2 45677766555 688999999999999999999999863 4333 34558899999999998775
No 29
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.03 E-value=2.9e-09 Score=99.86 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=90.7
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhh-ccccccCCCCCCCCchhHHHHHHHHhHhCC
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLI-NHQLGQKYSKSGAHRQPIIHVFRYFKAEHP 438 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 438 (694)
+||||+|.+++...+++.+..++.. ...+++++|+++.+........ ...............++.++.+.+..+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 76 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR-- 76 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 5899999999999999999999854 4568999999875322110000 0000000000001123333333322222
Q ss_pred CceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCC--CcEEEEe
Q 038780 439 KFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAP--SSVGILI 511 (694)
Q Consensus 439 ~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~Ap--csVgIlv 511 (694)
.++.++..+... .+.++.|++.|++.++|+||||.|++.+....+.++ ++.++|++++| |||.++.
T Consensus 77 ~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gs-----sva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 77 KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKS-----DVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCC-----chhHHHHhcCCCCceEEEEe
Confidence 456666655553 588999999999999999999999987654433221 38899999999 9997753
No 30
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.98 E-value=2.7e-09 Score=97.09 Aligned_cols=122 Identities=19% Similarity=0.139 Sum_probs=88.9
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCCC
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHPK 439 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 439 (694)
|||+|+++++....+++.+..++.. .+..++++|+++-.. .+ . ....++.++.+.+..++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~--~~----~---------~~~~~~~l~~~~~~~~~~-- 61 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRL--NR----L---------SEAERRRLAEALRLAEEL-- 61 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCcc--cc----C---------CHHHHHHHHHHHHHHHHc--
Confidence 6999999999999999999999844 456899999986321 10 0 012344555555555432
Q ss_pred ceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhC-CCcEEEE
Q 038780 440 FVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKA-PSSVGIL 510 (694)
Q Consensus 440 ~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~A-pcsVgIl 510 (694)
+++ ..+..+ .+..+.|++.++|+++|+|+||.|++...... .+++..++|+++| ||+|.|.
T Consensus 62 ~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~------~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 62 GAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWREL------FRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH------hcccHHHHHHHhCCCCeEEEe
Confidence 233 333444 67899999999999999999999988655333 4556899999999 9998764
No 31
>PRK09982 universal stress protein UspD; Provisional
Probab=98.97 E-value=2.1e-09 Score=100.65 Aligned_cols=133 Identities=7% Similarity=-0.020 Sum_probs=85.6
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCCC
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHPK 439 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 439 (694)
|||+|+|.+++...+++-+..++ ++.+.+++++|+++......+.....+. ........++..+.++++.++..
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA--~~~~a~l~llhV~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~- 78 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELA--RHNDAHLTLIHIDDGLSELYPGIYFPAT---EDILQLLKNKSDNKLYKLTKNIQ- 78 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHH--HHhCCeEEEEEEccCcchhchhhhccch---HHHHHHHHHHHHHHHHHHHHhcC-
Confidence 79999999999999999999998 4566889999998743211100000000 00000011122233444443322
Q ss_pred ceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 440 FVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 440 ~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
...++..+.. .+.++.||+.|++.++||||||.| +.+. ...++ +.++|+++++|||.|+
T Consensus 79 ~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~-------~~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 79 WPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFI-------NRLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred CCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHH-------HHHHH-HHHHHHhcCCCCEEEe
Confidence 2234544445 789999999999999999999965 4322 22343 8999999999998776
No 32
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.96 E-value=3.6e-09 Score=99.06 Aligned_cols=135 Identities=10% Similarity=-0.007 Sum_probs=84.9
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCC
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHP 438 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 438 (694)
-|||+|+|.+++...+++.+..++. .....++++|+.+......+....... ........++..+.++.+.++.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~- 77 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMAR--PYNAKVSLIHVDVNYSDLYTGLIDVNL---GDMQKRISEETHHALTELSTNA- 77 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHH--hhCCEEEEEEEccChhhhhhhhhhcch---HHHHHHHHHHHHHHHHHHHHhC-
Confidence 3799999999999999999998883 345789999984311110000000000 0000011222334455554432
Q ss_pred CceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEe
Q 038780 439 KFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILI 511 (694)
Q Consensus 439 ~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlv 511 (694)
++++....... .+.++.|++.|+++++||||||.|++. . . .++++.++|+++|||||.++.
T Consensus 78 -~~~~~~~~~~~--G~p~~~I~~~a~~~~~DLIV~Gs~~~~-----~---~-~lgSva~~v~~~a~~pVLvv~ 138 (144)
T PRK15118 78 -GYPITETLSGS--GDLGQVLVDAIKKYDMDLVVCGHHQDF-----W---S-KLMSSARQLINTVHVDMLIVP 138 (144)
T ss_pred -CCCceEEEEEe--cCHHHHHHHHHHHhCCCEEEEeCcccH-----H---H-HHHHHHHHHHhhCCCCEEEec
Confidence 34432222222 788999999999999999999999531 1 1 256899999999999988874
No 33
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.93 E-value=1.2e-09 Score=115.01 Aligned_cols=266 Identities=15% Similarity=0.149 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhhccChHHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhhccH
Q 038780 8 IFGYIFFMFLIGVKMDLSLIT---KLGKRE---WCISLSLMFNLLLVGMICQTISQILEPQEYLDDWIDLFTATTMLTSF 81 (694)
Q Consensus 8 ~~G~i~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~ 81 (694)
+-=+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++- ..+.. .. ....--+|+-++ |..
T Consensus 61 DgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIy---l~~n~-~~-----~~~~~GW~IP~A-TDI 130 (378)
T PF06965_consen 61 DGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIY---LAFNA-GG-----PEAAHGWAIPMA-TDI 130 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHH---GGG---SS-----TTHHHHTSSSS----H
T ss_pred HhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHH---heeec-CC-----CCcCceEEeccc-ccH
Confidence 333567889999999877663 333443 445667777777543 11111 10 112222222222 222
Q ss_pred HHHHHHHHhccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 82 PVVACFLMHLKI-INSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWII 160 (694)
Q Consensus 82 ~vv~~iL~el~~-~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~ 160 (694)
+-...++.=+|- ....+....++-|++||+.+++++++.++- .....+......++. +. |..
T Consensus 131 AFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt~-------~i~~~~L~~a~~~~~--~l--------~~l 193 (378)
T PF06965_consen 131 AFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYTD-------GISLLWLLLAAAALL--LL--------FVL 193 (378)
T ss_dssp HHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS------------HHHHHHHHHHHH--HH--------HHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeCC-------CCCHHHHHHHHHHHH--HH--------HHH
Confidence 222333332332 345567889999999999999998877641 122333333322211 11 223
Q ss_pred HHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCch--------hHHHHHHhhhhhhhhhhHH
Q 038780 161 RRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLA--------STLVEKLDTIVTGLFLPLM 232 (694)
Q Consensus 161 ~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~--------~~l~~kl~~~~~~~f~PlF 232 (694)
+|.. ++....+.++.. +..+....-|+|+.++..+.|+++|..++.+ +++++++++.++.+.+|+|
T Consensus 194 ~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlF 267 (378)
T PF06965_consen 194 NRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLF 267 (378)
T ss_dssp HHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHH
T ss_pred HHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhH
Confidence 3432 233344444432 3455557899999999999999999876542 4788888899988889999
Q ss_pred -HhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhh----------CCChhHHHHHHHHhhhhhhhhhhhhc
Q 038780 233 -ATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWF----------NTHSTDAAALSLILTVKGIVELGTFG 301 (694)
Q Consensus 233 -F~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~li~~~ 301 (694)
|+..|..++-..+..........+++..++||.+|.+..++.. +++|++-..+|.+-..-=.+++.+++
T Consensus 268 AlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFIa~ 347 (378)
T PF06965_consen 268 ALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFIAG 347 (378)
T ss_dssp HHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHHHH
T ss_pred hheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899998886554321111134455666778988887776543 46788888888877777789999999
Q ss_pred ccccc
Q 038780 302 TNFNK 306 (694)
Q Consensus 302 ~~~~~ 306 (694)
.+++.
T Consensus 348 LAF~~ 352 (378)
T PF06965_consen 348 LAFDD 352 (378)
T ss_dssp HHSTT
T ss_pred HHcCC
Confidence 99887
No 34
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.86 E-value=3.5e-07 Score=92.78 Aligned_cols=260 Identities=16% Similarity=0.179 Sum_probs=155.6
Q ss_pred HHHHHHHhhccChHHHH---hcchhH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhhccHHHHH
Q 038780 12 IFFMFLIGVKMDLSLIT---KLGKRE---WCISLSLMFNLLLVGMICQTISQILEPQEYLDDWIDLFTATTMLTSFPVVA 85 (694)
Q Consensus 12 i~llF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~ 85 (694)
.++.+++|+|+..+.+. ++++++ ..-++.|+++|..+- .++.. .+| ...--+++- +.|..+-..
T Consensus 72 AvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy---~~~n~-~~p-----~~~~GWaIP-~ATDiAFAl 141 (390)
T COG3004 72 AVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIY---LALNA-GDP-----ATLEGWAIP-MATDIAFAL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHh---heeec-CCh-----hhhcCcCcc-cHHHHHHHH
Confidence 45777899999988775 344443 344556677776442 11211 111 011111111 112222222
Q ss_pred HHHHhcc-cccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q 038780 86 CFLMHLK-IINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWIIRRTP 164 (694)
Q Consensus 86 ~iL~el~-~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~ 164 (694)
.+++=+| ...+.+.-..++-+++||+.+++++++.++- ..+..+..+..++..++. ..+|..
T Consensus 142 GvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~-------~Ls~~al~~a~~~i~vL~----------~lN~~~ 204 (390)
T COG3004 142 GVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTT-------DLSMAALGIAALAIAVLA----------VLNRLG 204 (390)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhcC-------CccHHHHHHHHHHHHHHH----------HHHHhC
Confidence 2333222 2456677788999999999999988876641 122223333322221111 122222
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCc----hhHHHHHHhhhhhhhhhhHH-Hhhhccc
Q 038780 165 EGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPL----ASTLVEKLDTIVTGLFLPLM-ATFCGLK 239 (694)
Q Consensus 165 ~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~----~~~l~~kl~~~~~~~f~PlF-F~~~Gl~ 239 (694)
++....+++...++-.+ -..-|+|..+...+.|+.+|-..+. -+++++.+.+.+.-+.+|+| |+..|..
T Consensus 205 ----v~~l~~Y~~~gviLW~~--vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvs 278 (390)
T COG3004 205 ----VRRLSPYLLVGVILWIA--VLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVS 278 (390)
T ss_pred ----chhhhHHHHHHHHHHHH--HHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCcc
Confidence 11222444444444333 3478999999999999999965332 35677777788878888999 8888888
Q ss_pred cc---ccccccCCchhHHHHHHHHHHHHHHHHHHHHHhh----------CCChhHHHHHHHHhhhhhhhhhhhhcccccc
Q 038780 240 SN---LRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWF----------NTHSTDAAALSLILTVKGIVELGTFGTNFNK 306 (694)
Q Consensus 240 ~d---l~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~ 306 (694)
++ ++.+.+. ....+++..++||.+|.+..++.. +.+|++-..++++...-=.+++.+.+.+++.
T Consensus 279 l~g~~~~~l~s~---l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 279 LQGVSLSGLTSP---LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred cccccccccccc---hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 76 3333322 245566777889988877777653 5788888888887777778899999888876
Q ss_pred C
Q 038780 307 Q 307 (694)
Q Consensus 307 ~ 307 (694)
.
T Consensus 356 ~ 356 (390)
T COG3004 356 E 356 (390)
T ss_pred h
Confidence 3
No 35
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.86 E-value=8.7e-09 Score=94.48 Aligned_cols=134 Identities=14% Similarity=0.092 Sum_probs=88.1
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHH---HHhH
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFR---YFKA 435 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~---~~~~ 435 (694)
-|||+|++++++...+++.+..++. .....++++|+++.............. .. ...+....... ....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~--~~~~~i~~l~v~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~ 74 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAK--RSGAEITLLHVIPPPPQYSFSAAEDEE--SE----EEAEEEEQARQAEAEEAE 74 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHH--HHTCEEEEEEEEESCHCHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHH--hhCCeEEEEEeeccccccccccccccc--cc----cccchhhhhhhHHHHHHh
Confidence 3899999999999999999999884 355889999999965543221100000 00 00000000000 1111
Q ss_pred hCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 436 EHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 436 ~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
. .+.......+ .+ .+..+.|+..+++.++|+||||.|++....+. .++++.+++++++||||.|+
T Consensus 75 ~-~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~------~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 75 A-EGGIVIEVVI-ES--GDVADAIIEFAEEHNADLIVMGSRGRSGLERL------LFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp H-HTTSEEEEEE-EE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTS------SSHHHHHHHHHHTSSEEEEE
T ss_pred h-hccceeEEEE-Ee--eccchhhhhccccccceeEEEeccCCCCccCC------CcCCHHHHHHHcCCCCEEEe
Confidence 1 1223333333 33 79999999999999999999999986554443 36679999999999999876
No 36
>PRK10116 universal stress protein UspC; Provisional
Probab=98.76 E-value=3.2e-08 Score=92.27 Aligned_cols=136 Identities=8% Similarity=-0.060 Sum_probs=87.2
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCC
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHP 438 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 438 (694)
-|||++++.+++...+++.+..++. .....++++|+++.+...... .... .........++..+.++++.++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~l~~~~~~-- 75 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIAR--PVNGKISLITLASDPEMYNQF--AAPM--LEDLRSVMQEETQSFLDKLIQD-- 75 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHH--HhCCEEEEEEEccCcccchhh--hHHH--HHHHHHHHHHHHHHHHHHHHHh--
Confidence 4799999999999999999999984 345689999998753211000 0000 0000000112223444554443
Q ss_pred CceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEec
Q 038780 439 KFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILID 512 (694)
Q Consensus 439 ~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvd 512 (694)
.+++...... ...+..+.|++.|+++++||||+|-|++.+... +.+..++|++++||||.++..
T Consensus 76 ~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv~~ 139 (142)
T PRK10116 76 ADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLVPL 139 (142)
T ss_pred cCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEEeC
Confidence 2333322222 348889999999999999999999998754321 124679999999999988743
No 37
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.68 E-value=1.8e-07 Score=84.66 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=87.7
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCCC
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHPK 439 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 439 (694)
|||+|++++++...+++.+..++.. .+..++++|+.+-.+......... .....++.++.+...... .
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~--~ 68 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR--LGAELVLLHVVDPPPSSAAELAEL--------LEEEARALLEALREALAE--A 68 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcchhHHHH--------HHHHHHHHHHHHHHHHhc--C
Confidence 6899999999999999999999944 457899999987543321100000 001123344444333221 4
Q ss_pred ceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEE
Q 038780 440 FVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGI 509 (694)
Q Consensus 440 ~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgI 509 (694)
+++++..... .+..++|++.+++.++|++|+|++++....+. .+++..++++++++|||.+
T Consensus 69 ~~~~~~~~~~---~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~------~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 69 GVKVETVVLE---GDPAEAILEAAEELGADLIVMGSRGRSGLRRL------LLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred CCceEEEEec---CCCHHHHHHHHHHcCCCEEEEcCCCCCcccee------eeccHHHHHHhCCCCCEEe
Confidence 5666665554 34489999999999999999999887543222 2445889999999999865
No 38
>PRK11175 universal stress protein UspE; Provisional
Probab=98.65 E-value=9.4e-08 Score=101.30 Aligned_cols=143 Identities=13% Similarity=-0.001 Sum_probs=88.4
Q ss_pred ceEEEEeecCCCh-------HHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHH
Q 038780 359 LRILVCTHRQDDA-------LAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFR 431 (694)
Q Consensus 359 lrILv~v~~~~~~-------~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 431 (694)
-|||+|++.++.. ..+++.+..++... ....++++|+.+.............. .........++..+.++
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 229 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NHAEVHLVNAYPVTPINIAIELPEFD--PSVYNDAIRGQHLLAMK 229 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cCCceEEEEEecCcchhccccccccc--hhhHHHHHHHHHHHHHH
Confidence 4899999987653 46888888877332 14679999998743321100000000 00000001122334455
Q ss_pred HHhHhCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEe
Q 038780 432 YFKAEHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILI 511 (694)
Q Consensus 432 ~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlv 511 (694)
++.++. +++........ .+..+.|++.|+++++||||||.|++.+..+.+ +|++.++|++++||||.++.
T Consensus 230 ~~~~~~--~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~l------lGS~a~~v~~~~~~pVLvv~ 299 (305)
T PRK11175 230 ALRQKF--GIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAF------LGNTAEHVIDHLNCDLLAIK 299 (305)
T ss_pred HHHHHh--CCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCccee------ecchHHHHHhcCCCCEEEEc
Confidence 555442 23322222222 678899999999999999999999987765544 44588999999999998886
Q ss_pred cCC
Q 038780 512 DRS 514 (694)
Q Consensus 512 dr~ 514 (694)
.++
T Consensus 300 ~~~ 302 (305)
T PRK11175 300 PDG 302 (305)
T ss_pred CCC
Confidence 554
No 39
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.38 E-value=3.3e-06 Score=79.04 Aligned_cols=127 Identities=10% Similarity=0.082 Sum_probs=80.2
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccc------------cccchHHHHHHHhhhcccccCCC
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYAR------------WTNTIDDEFLNGLKKNDEILGNL 597 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~------------~e~~~d~~~i~~~~~~~~~~~~~ 597 (694)
+|++++.|++..+.|+++|.++|+..+.+++++|+.++....... +.++..++.++++..... ..
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 77 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS---RK 77 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh---hc
Confidence 388999999999999999999999999999999998653211100 011223345555543211 12
Q ss_pred cEEEEEEEecC---chHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccc-hhhhhhhcCCCCCc--eeEEE
Q 038780 598 NIIYKEEAVKD---GSDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELG-PIGDLFASSDITAS--ISILV 671 (694)
Q Consensus 598 ~v~y~e~~v~~---g~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG-~igd~las~~~~~~--~SvLv 671 (694)
.+.+....++. .+++++..++ .+.|||++|+|+.. | |.. --+| -+.+.+... ++ .+|||
T Consensus 78 ~~~~~~~~~~g~~~~~~I~~~a~~--~~~dlIV~Gs~g~~------~---l~~-~~~gssva~~Vi~~---a~~~c~Vlv 142 (146)
T cd01989 78 GVQCEDVVLEDDDVAKAIVEYVAD--HGITKLVMGASSDN------H---FSM-KFKKSDVASSVLKE---APDFCTVYV 142 (146)
T ss_pred CCeEEEEEEeCCcHHHHHHHHHHH--cCCCEEEEeccCCC------c---eee-cccCCchhHHHHhc---CCCCceEEE
Confidence 23343333332 2345555554 66899999998742 2 221 2345 588888754 55 89999
Q ss_pred Eee
Q 038780 672 IQQ 674 (694)
Q Consensus 672 vqq 674 (694)
|+.
T Consensus 143 v~~ 145 (146)
T cd01989 143 VSK 145 (146)
T ss_pred EeC
Confidence 984
No 40
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.32 E-value=6.9e-06 Score=75.10 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=79.4
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCc---cccccchHHHHHHHhhhcccccCCCcEEEEEEEe
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGY---ARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAV 606 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~---~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v 606 (694)
+|+++..|.++.+.++++|.+||+..+++++++|+.++..... ...+++..++.++........ ....+.+ ...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~ 77 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAAS-LGVPVHT--IIR 77 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhh-cCCceEE--EEE
Confidence 4889999999999999999999999999999999987532111 011111223344444332110 0112322 222
Q ss_pred cCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038780 607 KDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQ 673 (694)
Q Consensus 607 ~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvq 673 (694)
.+| .++.+..++ .+.||+++|.++... | ...-+|...+.+... ++.+||||+
T Consensus 78 ~~~~~~~~I~~~a~~--~~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 78 IDHDIASGILRTAKE--RQADLIIMGWHGSTS---------L-RDRLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred ecCCHHHHHHHHHHh--cCCCEEEEecCCCCC---------c-cceecCchHHHHHhc---CCCCEEEeC
Confidence 222 445555554 679999999997531 2 334678888888764 778999984
No 41
>PRK09982 universal stress protein UspD; Provisional
Probab=98.24 E-value=4e-06 Score=78.39 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=74.2
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcC-cc-------ccc---cchHHHHHHHhhhcccccCC
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESG-YA-------RWT---NTIDDEFLNGLKKNDEILGN 596 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~-~~-------~~e---~~~d~~~i~~~~~~~~~~~~ 596 (694)
.++|+++..|+++.+.|+++|.++|+.++++++++|++++.... .. +.+ ++..++.+++..... ..
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 79 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNI---QW 79 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 36899999999999999999999999999999999998642110 00 000 011122344444332 11
Q ss_pred CcEEEEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038780 597 LNIIYKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQ 673 (694)
Q Consensus 597 ~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvq 673 (694)
..+. ..+..| +++.+..++ .++|||++|+|++ |++.|- | +.+-+.. .++.+||||.
T Consensus 80 ~~~~---~~v~~G~p~~~I~~~A~~--~~aDLIVmG~~~~-------~~~~~~-----~-va~~V~~---~s~~pVLvv~ 138 (142)
T PRK09982 80 PKTK---LRIERGEMPETLLEIMQK--EQCDLLVCGHHHS-------FINRLM-----P-AYRGMIN---KMSADLLIVP 138 (142)
T ss_pred Ccce---EEEEecCHHHHHHHHHHH--cCCCEEEEeCChh-------HHHHHH-----H-HHHHHHh---cCCCCEEEec
Confidence 1222 223345 445555554 7899999997632 333331 3 3333343 3788999985
No 42
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.17 E-value=0.00022 Score=73.73 Aligned_cols=254 Identities=12% Similarity=0.092 Sum_probs=147.9
Q ss_pred HHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhccHHHHHHHHHh
Q 038780 12 IFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTSFPVVACFLMH 90 (694)
Q Consensus 12 i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~e 90 (694)
..++|..|-.+|++...+..||...+-+.-+.++.++| +++.+++.. +......+.+-.+++.|.-..=..+..|
T Consensus 52 ~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~----g~~Gls~laiiaa~~~~Ng~ly~al~~~ 127 (312)
T PRK12460 52 GAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE----GIFGLSGLAIVAAMSNSNGGLYAALMGE 127 (312)
T ss_pred HHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc----cccchHHHHHHHHHhcCcHHHHHHHHHH
Confidence 36889999999999988888888888788888888888 777777642 2223455555556666666666666677
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q 038780 91 LKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWIIRRTPEGKPVK 170 (694)
Q Consensus 91 l~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~ 170 (694)
+|- ++|.|-..+. .++|. + +..++. +.. . ++- +.|
T Consensus 128 yG~-~~d~gA~~~~--sl~~G-------------------P---f~tm~a---Lga--~--------gLA-~ip------ 162 (312)
T PRK12460 128 FGD-ERDVGAISIL--SLNDG-------------------P---FFTMLA---LGA--A--------GLA-NIP------ 162 (312)
T ss_pred cCC-HhhhhHHhhh--hhccC-------------------c---HHHHHH---HHH--H--------HHh-cCC------
Confidence 773 4444432111 11111 1 111111 110 0 011 111
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCc
Q 038780 171 SSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLS 250 (694)
Q Consensus 171 e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~ 250 (694)
....+ +.+=|++.|+++.|..+ .+.+.+++= ..+.+|+|-+..|.++|+.++.+. .
T Consensus 163 ---~~~lv----------------~lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~-G 218 (312)
T PRK12460 163 ---IMALV----------------AALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQA-G 218 (312)
T ss_pred ---hHHHH----------------HHHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh-C
Confidence 00000 01235566777776432 344445443 356899999999999999988754 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHH--HHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHH
Q 038780 251 YPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALS--LILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASII 328 (694)
Q Consensus 251 ~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg--~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~ 328 (694)
+..+++.++.++.-...++...|++|.+.+.+..+| ..-+.=|...++...=-++ -.-+..-..+-.++++|.+++
T Consensus 219 ~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~~--~~~~~Ataqvaa~vivTail~ 296 (312)
T PRK12460 219 LAGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSLA--PVAAAATAQVAASVIVTAILT 296 (312)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 443444444444455566666688899988888777 5444444444443332211 111222333445678888889
Q ss_pred HHHHHhhccccC
Q 038780 329 PIIVRKLHDFSN 340 (694)
Q Consensus 329 ~~l~~~l~~p~~ 340 (694)
|.++.|++|+.+
T Consensus 297 P~~t~~~~k~~~ 308 (312)
T PRK12460 297 PLLTSWVAKKEA 308 (312)
T ss_pred HHHHHHHHHHhc
Confidence 999999996543
No 43
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.14 E-value=1.4e-05 Score=72.96 Aligned_cols=125 Identities=19% Similarity=0.213 Sum_probs=78.6
Q ss_pred eEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccc--cccchHHHHHHHh---------hhcccccCCC
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYAR--WTNTIDDEFLNGL---------KKNDEILGNL 597 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~--~e~~~d~~~i~~~---------~~~~~~~~~~ 597 (694)
+||++++.|+++.++|+++|.++|+..+++++++++.++....... ............. .... ..
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 78 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAE----GG 78 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhh----cc
Confidence 5899999999999999999999999999999999998753221100 0000000000000 1111 12
Q ss_pred cEEEEEEEecCc-hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEE
Q 038780 598 NIIYKEEAVKDG-SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVI 672 (694)
Q Consensus 598 ~v~y~e~~v~~g-~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvv 672 (694)
...+......+. .++.+.+++ .++||+++|+++... |.+ --+|...+-++.. +..+||||
T Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~--~~~dliv~G~~~~~~---------~~~-~~~gs~~~~l~~~---~~~pVlvv 139 (140)
T PF00582_consen 79 IVIEVVIESGDVADAIIEFAEE--HNADLIVMGSRGRSG---------LER-LLFGSVAEKLLRH---APCPVLVV 139 (140)
T ss_dssp SEEEEEEEESSHHHHHHHHHHH--TTCSEEEEESSSTTS---------TTT-SSSHHHHHHHHHH---TSSEEEEE
T ss_pred ceeEEEEEeeccchhhhhcccc--ccceeEEEeccCCCC---------ccC-CCcCCHHHHHHHc---CCCCEEEe
Confidence 233322222333 445566665 889999999998321 222 3488888888874 66799997
No 44
>PRK15005 universal stress protein F; Provisional
Probab=98.12 E-value=2.4e-05 Score=72.97 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=76.3
Q ss_pred eEEEEeccCCcch--HHHHHHHHHHHhCCCeEEEEEEEeecCCcC-------ccc-----cccchHHHHHHHhhhccccc
Q 038780 529 YRLAVLYMGGEDD--MEALAYARRMARSSRVHLTVIHFTLSKESG-------YAR-----WTNTIDDEFLNGLKKNDEIL 594 (694)
Q Consensus 529 ~~I~~~f~gg~dd--reAl~~a~rma~~~~v~ltv~~~~~~~~~~-------~~~-----~e~~~d~~~i~~~~~~~~~~ 594 (694)
++|+++..|++.+ +.|+++|.++|+..++++++++++++.... ..+ ..++..++.++++.....
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 80 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK-- 80 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC--
Confidence 5799999999874 799999999999999999999998642110 000 001112234444443321
Q ss_pred CCCcEEEEEEEecCchH---HHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEE
Q 038780 595 GNLNIIYKEEAVKDGSD---TAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILV 671 (694)
Q Consensus 595 ~~~~v~y~e~~v~~g~~---~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLv 671 (694)
...+.+. ..+..|.. +.+..++ .++|||++|+|++ |+.+| =+|-..+.+..+ ++.+|||
T Consensus 81 -~~~~~~~-~~v~~G~p~~~I~~~a~~--~~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl~~---a~cpVlv 142 (144)
T PRK15005 81 -LPTDRVH-VHVEEGSPKDRILELAKK--IPADMIIIASHRP-------DITTY----LLGSNAAAVVRH---AECSVLV 142 (144)
T ss_pred -CCCCceE-EEEeCCCHHHHHHHHHHH--cCCCEEEEeCCCC-------Cchhe----eecchHHHHHHh---CCCCEEE
Confidence 1222222 22344532 3333333 6899999998742 22222 457777777765 7789999
Q ss_pred Ee
Q 038780 672 IQ 673 (694)
Q Consensus 672 vq 673 (694)
|.
T Consensus 143 Vr 144 (144)
T PRK15005 143 VR 144 (144)
T ss_pred eC
Confidence 83
No 45
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.11 E-value=6.2e-05 Score=70.37 Aligned_cols=140 Identities=14% Similarity=0.064 Sum_probs=90.2
Q ss_pred ceEEEEee-cCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhcccccc-C--CCCCCCCchhHHHHHHHHh
Q 038780 359 LRILVCTH-RQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQ-K--YSKSGAHRQPIIHVFRYFK 434 (694)
Q Consensus 359 lrILv~v~-~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~~af~~~~ 434 (694)
.+||++++ .++.....++.+...+... ...++++++++..+............. . ........++..+..++..
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRL--GAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhc--CCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 58999999 9999999999998888543 355778888775443221111100000 0 0000112344555555555
Q ss_pred HhCCCceE-EEEEEEEcCCCCc-hHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEe
Q 038780 435 AEHPKFVQ-VQVFSAISPPKVM-HEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILI 511 (694)
Q Consensus 435 ~~~~~~v~-v~~~t~vs~~~~m-~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlv 511 (694)
++. .+. ++....- .+. .+.|+..|.+.++|+|+||.+++++.++. .+|++.++|++++||||.++.
T Consensus 84 ~~~--~~~~~~~~~~~---g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~------llGsvs~~v~~~~~~pVlvv~ 151 (154)
T COG0589 84 EAA--GVPVVETEVVE---GSPSAEEILELAEEEDADLIVVGSRGRSGLSRL------LLGSVAEKVLRHAPCPVLVVR 151 (154)
T ss_pred HHc--CCCeeEEEEec---CCCcHHHHHHHHHHhCCCEEEECCCCCccccce------eeehhHHHHHhcCCCCEEEEc
Confidence 442 223 3443333 445 69999999999999999999988776553 355689999999999987763
No 46
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.03 E-value=2.7e-06 Score=93.32 Aligned_cols=315 Identities=15% Similarity=0.129 Sum_probs=186.6
Q ss_pred HHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHH-HHHHHHHhhh--cccCCCchhHHHHHHHHHhhccHHHHHHHHHh
Q 038780 14 FMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLV-GMICQTISQI--LEPQEYLDDWIDLFTATTMLTSFPVVACFLMH 90 (694)
Q Consensus 14 llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~-g~~~~~l~~~--~~~~~~~~~~~l~ig~~ls~Ts~~vv~~iL~e 90 (694)
++|-+|.-|--+.+..|....+..++.|.+.-.+. |+..|.+... +.+. ......++.|...|...+..|..+..|
T Consensus 109 IvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEE 187 (670)
T KOG1966|consen 109 IVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEE 187 (670)
T ss_pred HHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhh
Confidence 46778999988899999999999999998875443 3222222221 1111 346788999999999999999999999
Q ss_pred cccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q 038780 91 LKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASI-----RVGIKAMALSLSLIVFVTIVLRRLMFWIIRRTPE 165 (694)
Q Consensus 91 l~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~ 165 (694)
... |.-+=-++-+.+++||...+++.-+...+..-++.+. ......++...+.+++++.++..+.....|.+.+
T Consensus 188 ihV-Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~ 266 (670)
T KOG1966|consen 188 IHV-NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH 266 (670)
T ss_pred hcc-ccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc
Confidence 886 5555567888999999999888766555543321111 0111111101111222333333333344444433
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCC-----CchhHHHHHHhhhhhhhhhhHHHhhhcccc
Q 038780 166 GKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGP-----PLASTLVEKLDTIVTGLFLPLMATFCGLKS 240 (694)
Q Consensus 166 ~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~-----p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~ 240 (694)
++-..-++++.+..+++..+|.++++++++--+.|+++..-- .....-++..-...+..--++-|.+.|..+
T Consensus 267 ---vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~ 343 (670)
T KOG1966|consen 267 ---VRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVST 343 (670)
T ss_pred ---eeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhh
Confidence 222335677788889999999999999999999999987631 111122222222334455677777888876
Q ss_pred cccccccCCchh-HHHHHHHHHHHHHHHHHHHHHhh------CCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhh
Q 038780 241 NLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVWF------NTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGE 313 (694)
Q Consensus 241 dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~~------~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~ 313 (694)
- +. ++.|.|. +.+-++.+.+.|.+++...+++. +++..|-+.++. =..||.+...+...--...+-..+.
T Consensus 344 v-~~-~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~lid~~~vp~K~~ 420 (670)
T KOG1966|consen 344 V-SS-NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVLIDGAKVPAKNM 420 (670)
T ss_pred c-CC-cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEEeccccCCcccc
Confidence 3 22 3334444 34444445556888877776664 356667665544 3456766655443322122222222
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHhhc
Q 038780 314 -----FTVAVVLILILASIIPIIVRKLH 336 (694)
Q Consensus 314 -----f~~lv~~~lltt~i~~~l~~~l~ 336 (694)
+.++...+.+..+..-|+++|+-
T Consensus 421 Fvttti~VIfFTVflQGiTIkplvk~L~ 448 (670)
T KOG1966|consen 421 FVTTTIAVIFFTVFLQGITIKPLVKFLK 448 (670)
T ss_pred eEeeeeEEEeeeeeecccchHHHHHHHc
Confidence 22222333344444578888875
No 47
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.00 E-value=2e-05 Score=71.52 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=75.7
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEEEEecCc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAVKDG 609 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g 609 (694)
||++++.|++..++++++|.++|+..+++++++++.++...... +..++.+++++.... ...+.+. .+.++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~----~~~~~~l~~~~~~~~---~~~~~~~--~~~~~ 71 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLS----EAERRRLAEALRLAE---ELGAEVV--TLPGD 71 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCC----HHHHHHHHHHHHHHH---HcCCEEE--EEeCC
Confidence 58899999999999999999999999999999999876432111 112334444443211 1112221 22222
Q ss_pred ---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEE
Q 038780 610 ---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVI 672 (694)
Q Consensus 610 ---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvv 672 (694)
+.+.+++++ .+.|++++|.++... |. .--+|-..+-+...- .+..|||+
T Consensus 72 ~~~~~I~~~~~~--~~~dllviG~~~~~~---------~~-~~~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 72 DVAEAIVEFARE--HNVTQIVVGKSRRSR---------WR-ELFRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred cHHHHHHHHHHH--cCCCEEEeCCCCCch---------HH-HHhcccHHHHHHHhC--CCCeEEEe
Confidence 335555555 779999999997421 21 225677777777541 36788886
No 48
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.96 E-value=4.6e-05 Score=71.15 Aligned_cols=123 Identities=16% Similarity=0.204 Sum_probs=75.8
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcC-c----c---ccccch---HHHHHHHhhhcccccCC
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESG-Y----A---RWTNTI---DDEFLNGLKKNDEILGN 596 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~-~----~---~~e~~~---d~~~i~~~~~~~~~~~~ 596 (694)
.++|+++..|.+..+.|+++|..+|+.++++++++++..+.... . . +.+++. ..+.++++....
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 77 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----- 77 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 46899999999999999999999999999999999985321100 0 0 000011 112233333221
Q ss_pred CcEEEEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038780 597 LNIIYKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQ 673 (694)
Q Consensus 597 ~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvq 673 (694)
.+...+..+..| +++.+..++ .++||||+|+|++ + |. .+|-..+.+... ++.+||||.
T Consensus 78 -~~~~~~~~~~~G~p~~~I~~~a~~--~~~DLIV~Gs~~~-------~---~~---~lgSva~~v~~~---a~~pVLvv~ 138 (144)
T PRK15118 78 -GYPITETLSGSGDLGQVLVDAIKK--YDMDLVVCGHHQD-------F---WS---KLMSSARQLINT---VHVDMLIVP 138 (144)
T ss_pred -CCCceEEEEEecCHHHHHHHHHHH--hCCCEEEEeCccc-------H---HH---HHHHHHHHHHhh---CCCCEEEec
Confidence 122222333334 345555554 7899999999952 1 21 256566666654 778999998
Q ss_pred e
Q 038780 674 Q 674 (694)
Q Consensus 674 q 674 (694)
.
T Consensus 139 ~ 139 (144)
T PRK15118 139 L 139 (144)
T ss_pred C
Confidence 5
No 49
>PRK10116 universal stress protein UspC; Provisional
Probab=97.95 E-value=4.5e-05 Score=70.96 Aligned_cols=123 Identities=17% Similarity=0.214 Sum_probs=74.4
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCc---C-cc---cccc---chHHHHHHHhhhcccccCCC
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKES---G-YA---RWTN---TIDDEFLNGLKKNDEILGNL 597 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~---~-~~---~~e~---~~d~~~i~~~~~~~~~~~~~ 597 (694)
.++|+++..+.++...|+++|.++|+..++++|++++.++... . .. +.++ +..++++++...+.
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 76 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA------ 76 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 4689999999999999999999999999999999998743210 0 00 0000 11123344443321
Q ss_pred cEEEEEEEecCch---HHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038780 598 NIIYKEEAVKDGS---DTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQ 673 (694)
Q Consensus 598 ~v~y~e~~v~~g~---~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvq 673 (694)
.+......+..|. ++.+.+++ .++||+|+|+++.. +++.| +...+-+... ++.+||||.
T Consensus 77 ~~~~~~~~~~~G~~~~~I~~~a~~--~~~DLiV~g~~~~~------~~~~~------~s~a~~v~~~---~~~pVLvv~ 138 (142)
T PRK10116 77 DYPIEKTFIAYGELSEHILEVCRK--HHFDLVICGNHNHS------FFSRA------SCSAKRVIAS---SEVDVLLVP 138 (142)
T ss_pred CCCeEEEEEecCCHHHHHHHHHHH--hCCCEEEEcCCcch------HHHHH------HHHHHHHHhc---CCCCEEEEe
Confidence 1111223334443 34444444 68999999999742 22222 2235555543 788999995
No 50
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.85 E-value=0.00014 Score=65.46 Aligned_cols=127 Identities=21% Similarity=0.241 Sum_probs=78.2
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCc---cccccchHHHHHHHhhhcccccCCCcEEEEEEEe
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGY---ARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAV 606 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~---~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v 606 (694)
+|++++.+++..+.++++|.++|+..+.+++++++.++..... .+.+....++.++.+...... ....+.+.-..-
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 79 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAE-AGVKVETVVLEG 79 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEecC
Confidence 4789999999999999999999999999999999986532210 001112234555565543100 122233321112
Q ss_pred cCchHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEE
Q 038780 607 KDGSDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVI 672 (694)
Q Consensus 607 ~~g~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvv 672 (694)
....++.+.+++ .++|++++|+++.. .|.+ --.|...+.|... ++.+||++
T Consensus 80 ~~~~~i~~~~~~--~~~dlvvig~~~~~---------~~~~-~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 80 DPAEAILEAAEE--LGADLIVMGSRGRS---------GLRR-LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred CCHHHHHHHHHH--cCCCEEEEcCCCCC---------ccce-eeeccHHHHHHhC---CCCCEEeC
Confidence 223456666665 77999999988642 1211 3467777777754 56677764
No 51
>PRK15456 universal stress protein UspG; Provisional
Probab=97.85 E-value=0.00013 Score=67.95 Aligned_cols=124 Identities=19% Similarity=0.138 Sum_probs=76.2
Q ss_pred eEEEEeccCCc--chHHHHHHHHHHHhCCCeEEEEEEEeecCCcC------c--cccc---cchHHHHHHHhhhcccccC
Q 038780 529 YRLAVLYMGGE--DDMEALAYARRMARSSRVHLTVIHFTLSKESG------Y--ARWT---NTIDDEFLNGLKKNDEILG 595 (694)
Q Consensus 529 ~~I~~~f~gg~--ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~------~--~~~e---~~~d~~~i~~~~~~~~~~~ 595 (694)
++|+++..|++ ....|+++|.++|+.. .+++++++.++.... . ++.+ ++..++.++++.....
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 78 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFT--- 78 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhC---
Confidence 57999999984 7899999999999885 589999998652110 0 0001 1122234444443321
Q ss_pred CCcEEEEEEEecCch---HHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEE
Q 038780 596 NLNIIYKEEAVKDGS---DTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVI 672 (694)
Q Consensus 596 ~~~v~y~e~~v~~g~---~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvv 672 (694)
.....+. ..+..|. ++.+..++ .+.||||+|+|+. + + +..=+|-..+-+... ++.+||||
T Consensus 79 ~~~~~v~-~~v~~G~~~~~I~~~a~~--~~~DLIVmG~~g~--~--------~-~~~llGS~a~~v~~~---a~~pVLvV 141 (142)
T PRK15456 79 IDPSRIK-QHVRFGSVRDEVNELAEE--LGADVVVIGSRNP--S--------I-STHLLGSNASSVIRH---ANLPVLVV 141 (142)
T ss_pred CCCcceE-EEEcCCChHHHHHHHHhh--cCCCEEEEcCCCC--C--------c-cceecCccHHHHHHc---CCCCEEEe
Confidence 1222222 2334443 34444443 6799999999863 1 1 122478888888875 77899998
Q ss_pred e
Q 038780 673 Q 673 (694)
Q Consensus 673 q 673 (694)
.
T Consensus 142 ~ 142 (142)
T PRK15456 142 R 142 (142)
T ss_pred C
Confidence 3
No 52
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.84 E-value=0.0018 Score=66.75 Aligned_cols=258 Identities=16% Similarity=0.128 Sum_probs=136.9
Q ss_pred HHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCC-CchhHHHHHHHHHhhccHHHHHHHHH
Q 038780 12 IFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQE-YLDDWIDLFTATTMLTSFPVVACFLM 89 (694)
Q Consensus 12 i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~-~~~~~~l~ig~~ls~Ts~~vv~~iL~ 89 (694)
..++|..|-++|++...+..||...+-+.-+++..++| ++.++++...-..+ ......+.+-.+++.+.-..=..+..
T Consensus 52 g~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~ 131 (314)
T PF03812_consen 52 GVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMG 131 (314)
T ss_pred HHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHH
Confidence 46889999999999999999999888888889999888 77777765210000 02344555555566666666666666
Q ss_pred hcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038780 90 HLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWIIRRTPEGKPV 169 (694)
Q Consensus 90 el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~ 169 (694)
|+|- ++|.|-. +..-++|.=. +..+++. - . | .
T Consensus 132 ~yGd-~~D~gA~--~i~sl~~GPf-------------------------~tMl~LG----------------~-s-G--~ 163 (314)
T PF03812_consen 132 QYGD-EEDVGAF--SILSLNDGPF-------------------------FTMLALG----------------A-S-G--L 163 (314)
T ss_pred HhCC-HHHhHHH--HHHHhhhhHH-------------------------HHHHHHh----------------h-c-c--c
Confidence 6653 3333321 1111111100 1111000 0 0 0 0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCC
Q 038780 170 KSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGL 249 (694)
Q Consensus 170 ~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~ 249 (694)
.+..+...+ ..+=|++.|+++.|..| ++.+-+.+ ....++|+|-...|..+|+..+...
T Consensus 164 a~ip~~~lv----------------~~llP~iiG~iLGNLD~---~~r~fl~~-~~~~lIPF~~f~lGa~inl~~i~~a- 222 (314)
T PF03812_consen 164 ANIPWMSLV----------------AALLPIIIGMILGNLDP---DFRKFLAP-GVPILIPFFGFALGAGINLSNIIKA- 222 (314)
T ss_pred cCCCHHHHH----------------HHHHHHHHHHHHhcCCH---HHHHHHhc-CCCeeeehhhhhhcCCCCHHHHHHh-
Confidence 010111111 22448888999988743 44555554 4578999999999999999888754
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHH
Q 038780 250 SYPLVFGMTIGLFFKLIAVYLPAVWF-NTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASII 328 (694)
Q Consensus 250 ~~~~~~ii~~~~~~K~~~~~l~~~~~-~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~ 328 (694)
....+++-++.++.-....++.-|+. |-+-.-+..++-.-..--....+++..--+..-.-+..-.-+..++++|++++
T Consensus 223 Gl~GIlLgv~~~~vtg~~~~~~dr~i~~~~g~aG~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~ 302 (314)
T PF03812_consen 223 GLSGILLGVIVVVVTGIPLYLADRLILKGNGVAGAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILT 302 (314)
T ss_pred CcchHHHHHHHHHHHhHHHHHHHHHHcCCCCceeehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 23222222222222334445555553 33322222222111111111222222211222222233344556788888899
Q ss_pred HHHHHhhccc
Q 038780 329 PIIVRKLHDF 338 (694)
Q Consensus 329 ~~l~~~l~~p 338 (694)
|.+++|++|+
T Consensus 303 P~lt~~~~kr 312 (314)
T PF03812_consen 303 PILTSWWAKR 312 (314)
T ss_pred HHHHHHHHHh
Confidence 9999998853
No 53
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.55 E-value=0.00047 Score=73.99 Aligned_cols=131 Identities=15% Similarity=0.060 Sum_probs=82.3
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHh--
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAE-- 436 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-- 436 (694)
-|||+|+|.+++...+++-+..++...+...+++++|+++....... .+ ......+++++..++..++
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~----~~------~~~~~~eelle~~~~~~~~~l 75 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPE----GQ------DELAAAEELLERVEVWATEDL 75 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccc----hh------HHHHHHHHHHHHHHHHHHHhh
Confidence 47999999999999999999999843213579999999984321110 00 0011234455555554432
Q ss_pred --CCCceEEEEEEEEc-----CCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCc
Q 038780 437 --HPKFVQVQVFSAIS-----PPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSS 506 (694)
Q Consensus 437 --~~~~v~v~~~t~vs-----~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~Apcs 506 (694)
...+++++..+... ...+.++.|++.|+|+++|+||||=.-+. +| +.+.+|.+- .=|.++-|+
T Consensus 76 ~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~--~~----~~~~~~~~~-~~~~~~~~~ 145 (357)
T PRK12652 76 GDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP--GG----TAPMLQPLE-RELARAGIT 145 (357)
T ss_pred hcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC--CC----CCcccchHH-HHHHhcCCc
Confidence 11467777665542 11588999999999999999999944332 22 233444443 335566665
No 54
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.45 E-value=0.0052 Score=63.04 Aligned_cols=255 Identities=14% Similarity=0.121 Sum_probs=130.8
Q ss_pred HHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCC-CchhHHHHHHHHHhhccHHHHHHHHH
Q 038780 12 IFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQE-YLDDWIDLFTATTMLTSFPVVACFLM 89 (694)
Q Consensus 12 i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~-~~~~~~l~ig~~ls~Ts~~vv~~iL~ 89 (694)
..++|..|-.+|++...+..||...+-+.-++++.++| +++.+++...-..+ ......+.+-.+++.|.-..=..+..
T Consensus 52 ~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~ 131 (314)
T TIGR00793 52 AVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQ 131 (314)
T ss_pred HHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHH
Confidence 46889999999999988888888777777888888888 77777764210000 11233444444444444444444555
Q ss_pred hcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q 038780 90 HLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWIIRRTPEGKPV 169 (694)
Q Consensus 90 el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~ 169 (694)
|+|- ++|.|-..+. .++| + + ++..+++. -.| .
T Consensus 132 qyGd-~~D~gA~~i~--sl~~------------------G-P------f~TMi~LG------------------~sG--l 163 (314)
T TIGR00793 132 QYGT-KEEAGAFVLM--SLES------------------G-P------LMTMVILG------------------TAG--I 163 (314)
T ss_pred HcCC-Hhhhhhhhhh--hhcc------------------C-c------HHHHHHHh------------------hcc--C
Confidence 5552 3333321111 0111 0 0 01111110 000 0
Q ss_pred CchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCC
Q 038780 170 KSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGL 249 (694)
Q Consensus 170 ~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~ 249 (694)
.+..+...+ ..+=|++.|+++.|..| .+.+-+.+- ...++|+|-...|..+|++.+.+.
T Consensus 164 A~ip~~~lv----------------~~ilPlliG~ilGNLD~---~~r~fl~~~-~~~lIpFf~FaLGaginl~~i~~a- 222 (314)
T TIGR00793 164 ASFEPHVFV----------------GAVLPFLVGFALGNLDP---ELRDFFSKA-VQTLIPFFAFALGNTIDLGVIIQT- 222 (314)
T ss_pred CCCCHHHHH----------------HHHHHHHHHHHHhcCCH---HHHHHhccC-CCeeeehhhhhhcCCCCHHHHHHh-
Confidence 011111111 23448889999988743 455555553 478899999999999999888554
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhC-CChhHHHHHHHHhhhhhhh---hhhhhccccccCCCChhhHHHHHHHHHHHH
Q 038780 250 SYPLVFGMTIGLFFKLIAVYLPAVWFN-THSTDAAALSLILTVKGIV---ELGTFGTNFNKQVRNTGEFTVAVVLILILA 325 (694)
Q Consensus 250 ~~~~~~ii~~~~~~K~~~~~l~~~~~~-~~~~~~~~lg~~m~~kG~~---~li~~~~~~~~~~i~~~~f~~lv~~~lltt 325 (694)
....+++-+...+.--...++.-|+.+ -+..-+...+ ++-|-. ..+++..--+..-.-+..-..+-.++++|.
T Consensus 223 Gl~GIlLGl~v~~vtG~~~~~~dr~~~g~~g~aG~A~s---stAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTa 299 (314)
T TIGR00793 223 GLLGILLGVSVIILTGIPLILADKFIGGGDGTAGIAAS---SSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTS 299 (314)
T ss_pred CcchHHHHHHHHHHHhHHHHHHHHHhcCCCCchhhHHH---HHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHH
Confidence 222122222222233445555666653 2322333322 122222 122222211111122222233445677888
Q ss_pred HHHHHHHHhhccc
Q 038780 326 SIIPIIVRKLHDF 338 (694)
Q Consensus 326 ~i~~~l~~~l~~p 338 (694)
+++|.++.|++|+
T Consensus 300 iL~Pilta~~~kr 312 (314)
T TIGR00793 300 LLVPIATVWWSKK 312 (314)
T ss_pred HHHHHHHHHHHHh
Confidence 8899999999854
No 55
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.33 E-value=0.0019 Score=69.39 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=78.0
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCC--CeEEEEEEEeecCCcCccc-cccchHHHHHHHhhhcccc---cCCCcEEE
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSS--RVHLTVIHFTLSKESGYAR-WTNTIDDEFLNGLKKNDEI---LGNLNIIY 601 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~--~v~ltv~~~~~~~~~~~~~-~e~~~d~~~i~~~~~~~~~---~~~~~v~y 601 (694)
.+||++|+.|++..+.|+++|..+|+.. ++++|++|+++........ ...+..++.+++.+..... .....+.+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~v 84 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTI 84 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCce
Confidence 5789999999999999999999999985 6999999998753211110 1111122334444332100 00123444
Q ss_pred EEEEec-------Cc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCC
Q 038780 602 KEEAVK-------DG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDIT 664 (694)
Q Consensus 602 ~e~~v~-------~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~ 664 (694)
....+. .| +++++..++ .++|||++|....... -.|-|.+++--|+..+..
T Consensus 85 e~~vv~~~~~~~~~G~pae~Iv~~Aee--~~aDLIVm~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 145 (357)
T PRK12652 85 ETALLGTDEYLFGPGDYAEVLIAYAEE--HGIDRVVLDPEYNPGG----------TAPMLQPLERELARAGIT 145 (357)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHH--cCCCEEEECCCCCCCC----------CCcccchHHHHHHhcCCc
Confidence 434332 13 445555555 7899999999875443 256777888888876653
No 56
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.25 E-value=0.18 Score=52.91 Aligned_cols=144 Identities=10% Similarity=0.029 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHh-----hcc
Q 038780 7 TIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTM-----LTS 80 (694)
Q Consensus 7 a~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls-----~Ts 80 (694)
-...+.++||..|+.+..+++++..++... -+.+.+..|++- ++++.+....+ ...-+..|..+- .|+
T Consensus 40 ~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~-vligl~~qfvlmPlla~~~~~~~~-----l~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 40 IPIALALIMFGMGLTLSREDFLAGLKHPRL-VLIGLAAQFVLMPLLALLLAKLFP-----LPPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHhhcchHH-HHHHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHhHHheeeCCCchh
Confidence 367788999999999999999876655432 233334444444 44443333221 233445555553 333
Q ss_pred HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 81 FPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNA--SIRVGIKAMALSLSLIVFVTIVLRRLMFW 158 (694)
Q Consensus 81 ~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~r~~~~~ 158 (694)
. .+...+. +.+. -++++.+.++-+++.++.-+...+.-++.. +.+..++.++..++.=.+...+.||....
T Consensus 114 S-~~~t~lA-----kGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~ 186 (319)
T COG0385 114 S-NAMTYLA-----KGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPK 186 (319)
T ss_pred H-HHHHHHh-----cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333222 2222 356777788888888776554443332211 34455555555554445566677777765
Q ss_pred HHHHC
Q 038780 159 IIRRT 163 (694)
Q Consensus 159 ~~~~~ 163 (694)
..++.
T Consensus 187 ~~~~~ 191 (319)
T COG0385 187 WVERL 191 (319)
T ss_pred HHHHH
Confidence 55553
No 57
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.95 E-value=0.038 Score=58.59 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=78.0
Q ss_pred HHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCC
Q 038780 198 GPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNT 277 (694)
Q Consensus 198 Gaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~ 277 (694)
.+++.|..+.+. .+.+.+..+. +-.+++|++-...|.++|+..+... .+..+++.+..++......+...|+++.
T Consensus 178 lplliG~~lgnl---~~~l~~~~~~-Gi~~lLp~~~~~lG~~l~lq~i~~~-G~~GilL~~~~~~~t~~~~~~~~Rl~~~ 252 (326)
T PRK05274 178 LPLLVGFILGNL---DPELRQFLGK-AVPVLIPFFAFALGNGIDLGTIITA-GLSGILLGVAVVAVTGIPLYLADRLIGG 252 (326)
T ss_pred HHHHHHHHHHhH---HHhhHHHhcC-CcEEEHHHHHHHHhcceeHhHHHhc-CCcchhhhhhHhhccchhhHhHhheeec
Confidence 788888888774 2334444444 4577999999999999999888654 3443333333444445545555687754
Q ss_pred Chh---HHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhccccC
Q 038780 278 HST---DAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIPIIVRKLHDFSN 340 (694)
Q Consensus 278 ~~~---~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~~l~~~l~~p~~ 340 (694)
... -+...+..-+.-|...+....-.+ +-..++.-..+..++++++++.|.+..+++|+.+
T Consensus 253 ~~g~~g~a~~ttaG~aic~pAAvaa~~p~~--~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~ 316 (326)
T PRK05274 253 GNGVAGAAAGSTAGNAVATPAAVAAADPSF--APFAPAATAQVAAAVIVTAILAPILTAWWSKRVG 316 (326)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhcccc--ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333 233333323323333333333222 2233344444445666888888989998885443
No 58
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=96.41 E-value=0.88 Score=48.46 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHhchh--hhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCch
Q 038780 174 TIFIVCLVIVVAVVGETVGIQ--YFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSY 251 (694)
Q Consensus 174 ~~~il~~~l~~~~~ae~~g~~--~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~ 251 (694)
+...+..+.+.+++.+.+++. ..+||++.+.++.-.....-.+-+.+..+. .-+.-..+|.+++...+.....+
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~~a----qv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVNAA----QVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHH----HHHHHHHHHccccHHHHHHHHHH
Confidence 455556677788899999886 588998888877644211111122222221 12334567999987766543322
Q ss_pred h--HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHH
Q 038780 252 P--LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIP 329 (694)
Q Consensus 252 ~--~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~ 329 (694)
. .+...++.+..-.+.+++.+++.++++.+++ +.+.+-|.-|+.+.....+.+.---..+.++= .+....+.|
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~---La~aPGGl~eM~l~A~~l~~d~~~V~~~q~~R--l~~v~~~~p 307 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTAL---LATAPGGLAEMALIALALGADVAFVAAHQVVR--LLFVLLLAP 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCccHHHHHHHHHHcCCChHHHHHHHHHH--HHHHHHHHH
Confidence 2 4445555566678888888999999998877 56889998888877665554321111222211 222234467
Q ss_pred HHHHhhcc
Q 038780 330 IIVRKLHD 337 (694)
Q Consensus 330 ~l~~~l~~ 337 (694)
++.+++.|
T Consensus 308 ~~~r~~~r 315 (318)
T PF05145_consen 308 FIARWLRR 315 (318)
T ss_pred HHHHHHHH
Confidence 88887764
No 59
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.27 E-value=0.045 Score=50.79 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=81.0
Q ss_pred eeEEEEecc-CCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccc--------------cccchHHHHHHHhhhccc
Q 038780 528 VYRLAVLYM-GGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYAR--------------WTNTIDDEFLNGLKKNDE 592 (694)
Q Consensus 528 ~~~I~~~f~-gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~--------------~e~~~d~~~i~~~~~~~~ 592 (694)
..+|+++.. |.+..++|++.+..++...+..++++++.++....... ..+...++.+++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 467999999 99999999999999999999999988887542211100 012223455555554321
Q ss_pred ccCCCcEEEEEEEecCc----hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCcee
Q 038780 593 ILGNLNIIYKEEAVKDG----SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASIS 668 (694)
Q Consensus 593 ~~~~~~v~y~e~~v~~g----~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~S 668 (694)
...+...+..+..| +++....++ .++||+++|.++. +.|.+ --||-..+.+... ++.+
T Consensus 85 ---~~~~~~~~~~~~~g~~~~~~i~~~a~~--~~adliV~G~~g~---------~~l~~-~llGsvs~~v~~~---~~~p 146 (154)
T COG0589 85 ---AAGVPVVETEVVEGSPSAEEILELAEE--EDADLIVVGSRGR---------SGLSR-LLLGSVAEKVLRH---APCP 146 (154)
T ss_pred ---HcCCCeeEEEEecCCCcHHHHHHHHHH--hCCCEEEECCCCC---------ccccc-eeeehhHHHHHhc---CCCC
Confidence 11222112222333 334444444 5799999999743 22333 4677777777764 7789
Q ss_pred EEEEeee
Q 038780 669 ILVIQQQ 675 (694)
Q Consensus 669 vLvvqq~ 675 (694)
|||+...
T Consensus 147 Vlvv~~~ 153 (154)
T COG0589 147 VLVVRSE 153 (154)
T ss_pred EEEEccC
Confidence 9999754
No 60
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=96.12 E-value=2.8 Score=45.78 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=63.7
Q ss_pred CchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhh
Q 038780 211 PLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILT 290 (694)
Q Consensus 211 p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~ 290 (694)
|..+.+ .--+.++ .+++=+||+.+|++.|+..+.+.+ ..+++.++.+....+..++.+|++|.|..+.. ++..-|
T Consensus 257 ~~~~~l-~g~~~lg-~~lly~ffa~IGa~a~i~~l~~ap--~~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~-vAS~An 331 (378)
T PF05684_consen 257 PFRKLL-RGASELG-TFLLYLFFAVIGASADISELLDAP--SLFLFGFIILAIHLLLMLILGKLFKIDLFELL-VASNAN 331 (378)
T ss_pred chhhcC-CchHHHH-HHHHHHHHHHHccccCHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHhhcc
Confidence 444443 3334444 667778999999999999887632 23445555567788889999999999986554 556567
Q ss_pred hhhhhhhhhhccccccCCC
Q 038780 291 VKGIVELGTFGTNFNKQVR 309 (694)
Q Consensus 291 ~kG~~~li~~~~~~~~~~i 309 (694)
.-|..+......+++..+.
T Consensus 332 IGGpaTA~a~A~a~~~~Lv 350 (378)
T PF05684_consen 332 IGGPATAPAVAAAKGPSLV 350 (378)
T ss_pred cCCcchHHHHHHhcCCccH
Confidence 7777766665555554443
No 61
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.11 E-value=0.085 Score=54.91 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhchhhhHHHHhhhhcccCCCCch-hHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHHHHHH
Q 038780 180 LVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLA-STLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMT 258 (694)
Q Consensus 180 ~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~-~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~ 258 (694)
....++.+++.++++.++|-.++|+++.... ++ -.-.+.++.+. .+-+.++....|+++|++.+...... ...+..
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l~-~igl~~llF~~Gl~~d~~~l~~~~~~-~~~~~~ 79 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHLA-EFGVILLMFLIGLELDLERLWKLRKA-AFGVGV 79 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHHH
Confidence 3455678899999999999999999986431 11 00112344443 44455666778999999888654211 222223
Q ss_pred HHHHHH-HHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHH
Q 038780 259 IGLFFK-LIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASI 327 (694)
Q Consensus 259 ~~~~~K-~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i 327 (694)
..++.- ++.++...++++.++.+++.+|..+++-.. -+++.+-.|.+..+.+.-..++-.++++=.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~--~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~ 147 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSST--AVVVQVLKERGLLKTPFGQTVLGILLFQDIA 147 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHH--HHHHHHHHHcCcccChHHHHHHHHHHHHHHH
Confidence 333333 444455677889999999999998886532 3344445566666555444444444444333
No 62
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.03 E-value=0.095 Score=61.12 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCC-CCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchh
Q 038780 174 TIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTG-PPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYP 252 (694)
Q Consensus 174 ~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~-~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~ 252 (694)
....++...++..++..+|+++++|=.++|+++... ...-.. .+.++.+. .+-+.++...+|+.+|+..+......
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~la-elGvv~LlF~iGLEl~~~~l~~~~~~- 86 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHFA-EFGVVLMLFVIGLELDPQRLWKLRRS- 86 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHHH-HHHHHHHHHHHHhCcCHHHHHHHHHH-
Confidence 445566666777888899999999999999998532 111111 22344443 55566777788999999887543211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhh
Q 038780 253 LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVK 292 (694)
Q Consensus 253 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~k 292 (694)
.+.+-..-++.-++..+..++++|.++..++.+|..++.-
T Consensus 87 ~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~S 126 (621)
T PRK03562 87 IFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALS 126 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1111111222223333445677899999999999877644
No 63
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.93 E-value=0.16 Score=53.48 Aligned_cols=164 Identities=10% Similarity=0.142 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHH----HhchhhhHHHHhhhhcccC-CCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCch
Q 038780 177 IVCLVIVVAVVGE----TVGIQYFYGPFIFGLTVPT-GPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSY 251 (694)
Q Consensus 177 il~~~l~~~~~ae----~~g~~~~lGaf~~GL~i~~-~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~ 251 (694)
.+++..+..++++ ..++++.+=|.+.|+++.| .....+.+..-++.- ...++.+=-+..|.++++.++.+. ++
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G~ 83 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-GW 83 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-Cc
Confidence 3333444444444 3577778888999999998 544455555555543 357788888899999999988764 44
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCC-hhhHHHHHHHHHHHHHHHH
Q 038780 252 P-LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRN-TGEFTVAVVLILILASIIP 329 (694)
Q Consensus 252 ~-~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~-~~~f~~lv~~~lltt~i~~ 329 (694)
. .+..++...++=.++.++..|.+|++++.+..++...+.=|....+...-..+.+-=+ .-..+.+.+.-++..++-|
T Consensus 84 ~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P 163 (305)
T PF03601_consen 84 KGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYP 163 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHH
Confidence 4 3333333333444444555599999999999999999877777776665444443111 1112333334445555667
Q ss_pred HHHHhhccccCCC
Q 038780 330 IIVRKLHDFSNTY 342 (694)
Q Consensus 330 ~l~~~l~~p~~~~ 342 (694)
.+.+++.-+...+
T Consensus 164 ~l~~~l~l~~~~~ 176 (305)
T PF03601_consen 164 LLGHALGLSPQQF 176 (305)
T ss_pred HHHHHhCCCHHHH
Confidence 7777766554433
No 64
>PRK10490 sensor protein KdpD; Provisional
Probab=95.92 E-value=0.053 Score=66.07 Aligned_cols=125 Identities=13% Similarity=0.095 Sum_probs=85.1
Q ss_pred CCCceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhH
Q 038780 356 NDDLRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKA 435 (694)
Q Consensus 356 ~~~lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 435 (694)
....|||||++.+.+...+++-+..++.. .....+++|+.....+. . .. ...+++.+.++ +++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~--~~a~~~~l~V~~~~~~~--~--~~----------~~~~~l~~~~~-lA~ 310 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAAR--LGSVWHAVYVETPRLHR--L--PE----------KKRRAILSALR-LAQ 310 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHh--cCCCEEEEEEecCCcCc--C--CH----------HHHHHHHHHHH-HHH
Confidence 35679999999999999999999999954 44679999986421111 0 11 12244555554 665
Q ss_pred hCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCC-CcEEEEe
Q 038780 436 EHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAP-SSVGILI 511 (694)
Q Consensus 436 ~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~Ap-csVgIlv 511 (694)
+..+. +.. ... +++++.|.+.|++++++.||||=.++... -.. +++.+++++.+| -+|-|+-
T Consensus 311 ~lGa~--~~~--~~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~------~s~~~~l~r~~~~idi~iv~ 373 (895)
T PRK10490 311 ELGAE--TAT--LSD--PAEEKAVLRYAREHNLGKIIIGRRASRRW--WRR------ESFADRLARLGPDLDLVIVA 373 (895)
T ss_pred HcCCE--EEE--EeC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccC------CCHHHHHHHhCCCCCEEEEe
Confidence 53333 222 233 89999999999999999999997654321 011 248899999997 6766664
No 65
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.90 E-value=0.26 Score=52.42 Aligned_cols=119 Identities=11% Similarity=0.082 Sum_probs=79.8
Q ss_pred chhhhHHHHhhhhcccCCCCchhHHHHHHhhh---hhhhhhhHHHhhhccc-ccccccccCCchhHHHHHHHHHHHHHHH
Q 038780 192 GIQYFYGPFIFGLTVPTGPPLASTLVEKLDTI---VTGLFLPLMATFCGLK-SNLRDLSKGLSYPLVFGMTIGLFFKLIA 267 (694)
Q Consensus 192 g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~---~~~~f~PlFF~~~Gl~-~dl~~l~~~~~~~~~~ii~~~~~~K~~~ 267 (694)
++|+..-..++|.++....-..+++.++...+ ...-+.+..++.+|+. +|+..+.+...|..+++++...++=.++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 56777777777777766544445555554433 2222333334446766 7887776654455667777778888999
Q ss_pred HHHHHHhhCCChhHHH-HHHHHhhhh-hhhhhhhhccccccCCCC
Q 038780 268 VYLPAVWFNTHSTDAA-ALSLILTVK-GIVELGTFGTNFNKQVRN 310 (694)
Q Consensus 268 ~~l~~~~~~~~~~~~~-~lg~~m~~k-G~~~li~~~~~~~~~~i~ 310 (694)
+++.+|+.|+-+-|+- .-|+.|+.+ |.=|+++++-+.+.+++.
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 9999999997555554 445677765 667888888887777765
No 66
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=95.82 E-value=1.9 Score=45.95 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHhchh--hhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCch
Q 038780 174 TIFIVCLVIVVAVVGETVGIQ--YFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSY 251 (694)
Q Consensus 174 ~~~il~~~l~~~~~ae~~g~~--~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~ 251 (694)
+.+.+...++.+.+...+++. ..+|+++.|..+.-+....-++-+-+..+.+ -+.-..+|.++|-..+......
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~~va~----~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLLAVAQ----ALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHHHHHH----HHHHHHHcccccHHHHHHhHhh
Confidence 455555666666777777775 5799999999987764233233333332222 2345678999987666433222
Q ss_pred h--HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHH
Q 038780 252 P--LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIP 329 (694)
Q Consensus 252 ~--~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~ 329 (694)
. .++.++..++.-...+++..++.+.++.++. +..++-|.-++.....+.+... +.+-+.=++=.++...+.|
T Consensus 266 ~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~---La~sPGGl~~ma~~A~~l~ad~--a~V~a~q~lRll~il~i~p 340 (352)
T COG3180 266 LPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAY---LATSPGGLDTMAAIAAALGADP--AFVMALQVLRLLFILLLGP 340 (352)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHcCCCcHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHH
Confidence 2 4445555556667778888889999998877 5688889888887766655321 1111111111233334458
Q ss_pred HHHHhhcccc
Q 038780 330 IIVRKLHDFS 339 (694)
Q Consensus 330 ~l~~~l~~p~ 339 (694)
++.|++.|..
T Consensus 341 ~l~r~l~~~~ 350 (352)
T COG3180 341 ALARFLSKRA 350 (352)
T ss_pred HHHHHHHHHc
Confidence 8888877543
No 67
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=95.81 E-value=2.5 Score=44.90 Aligned_cols=31 Identities=10% Similarity=0.208 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhcchhH
Q 038780 4 YSLTIFGYIFFMFLIGVKMDLSLITKLGKRE 34 (694)
Q Consensus 4 ~~la~~G~i~llF~~Gle~d~~~l~~~~~~~ 34 (694)
|.....++..++|..|+.++.+++++..++.
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~ 60 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNW 60 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcc
Confidence 4677888899999999999999998765543
No 68
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.74 E-value=0.11 Score=54.65 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=86.7
Q ss_pred HHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHH
Q 038780 187 VGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLI 266 (694)
Q Consensus 187 ~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~ 266 (694)
..+..|.++..=|.++|+++...++...+...-++.- ...++.+=.+..|++++++++.+. ++..+.+++..+..-++
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~~v~~~~~~l~~t~~ 108 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGSGVLIIAITLSSTFL 108 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-CccHHHHHHHHHHHHHH
Confidence 4445566688888899999986655555555555543 466777888889999999988754 33356666666777788
Q ss_pred HHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhcccc
Q 038780 267 AVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNF 304 (694)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~ 304 (694)
.++...+++|+|++.++.+|...+.=|...+...+-..
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvi 146 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVI 146 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcC
Confidence 88888889999999999999988887877776665433
No 69
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.74 E-value=0.17 Score=58.54 Aligned_cols=134 Identities=12% Similarity=0.068 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCC-CchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHH
Q 038780 176 FIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGP-PLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLV 254 (694)
Q Consensus 176 ~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~-p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~ 254 (694)
.+++..+++..++..+|++.++|=.++|+++.... ..-+. .+.++.+. .+=+-++....|+++|++.+..... ...
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~la-~lGli~llF~~Gle~d~~~l~~~~~-~~~ 89 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPELA-ELGVILLMFGVGLHFSLKDLMAVKS-IAI 89 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHHH-HHHHHHHHHHhHhcCCHHHHHHHhh-HHH
Confidence 34556667778888889999999999999985431 11101 12233332 3444455566799999987754311 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhH
Q 038780 255 FGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEF 314 (694)
Q Consensus 255 ~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f 314 (694)
...+..++.-++.++...+.+++++.+++.+|..++.-.. .++..+-.+.|.++.+.-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~G 147 (558)
T PRK10669 90 PGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQRG 147 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcch
Confidence 1112222223344445566778999999999987777333 344555566777665443
No 70
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=95.73 E-value=2.1 Score=46.63 Aligned_cols=256 Identities=14% Similarity=0.149 Sum_probs=141.9
Q ss_pred hccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHh-----hccHHHHHHHHHhccc
Q 038780 20 VKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTM-----LTSFPVVACFLMHLKI 93 (694)
Q Consensus 20 le~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls-----~Ts~~vv~~iL~el~~ 93 (694)
|.||.+.+.|...|-+..-+.+.+..++++ +.+.+++.. .....+.+..-.. .-+.|...-.=+-++.
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~------~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~ 182 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYS------FKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQ 182 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCC
Confidence 489999999999998888888888888888 888777653 1222233332221 1123332211122333
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cc------c---h-------HHHHHHHHHHHHHHHHHHHHH
Q 038780 94 INSELGHFALSTALLCDLQSVILVNSYNYMDIIT-----NA------S---I-------RVGIKAMALSLSLIVFVTIVL 152 (694)
Q Consensus 94 ~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~-----~~------~---~-------~~~~~~~~~~~~~~~~~~~v~ 152 (694)
-..++=-.++.+.++..+++++.-+++.-+.+.. ++ + . ......+. .-.++.+.+|.+
T Consensus 183 ~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g-~Gllla~~~y~~ 261 (414)
T PF03390_consen 183 DAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMG-AGLLLACSFYIL 261 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHH-HHHHHHHHHHHH
Confidence 3344444566677777777777666655442211 00 0 0 00011111 112233344444
Q ss_pred HHHHHHHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHH
Q 038780 153 RRLMFWIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLM 232 (694)
Q Consensus 153 r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlF 232 (694)
..+...++ ..+. +...++.. .+...+|+ +|+ .-++=.++...|...-+.+-.
T Consensus 262 G~ll~~~i-------~ih~-~a~mIi~~-----~i~K~~~l------------vP~---~~e~~a~~~~~f~~~~lt~~l 313 (414)
T PF03390_consen 262 GVLLSKLI-------GIHA-YAWMIILV-----AIVKAFGL------------VPE---SLEEGAKQWYKFFSKNLTWPL 313 (414)
T ss_pred HHHHHHhc-------CCcH-HHHHHHHH-----HHHHHhCc------------CCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 1221 22222211 11111111 222 223333445555555666666
Q ss_pred Hhhhccc-ccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHH-HHHHHHhhhh-hhhhhhhhccccccCCC
Q 038780 233 ATFCGLK-SNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDA-AALSLILTVK-GIVELGTFGTNFNKQVR 309 (694)
Q Consensus 233 F~~~Gl~-~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~-~~lg~~m~~k-G~~~li~~~~~~~~~~i 309 (694)
.+.+|+. +|+.++....++.-+++++..+++-.+++++..|+.|+-+-|+ +.-|+.|+.+ |.=|+++++-+.+.+++
T Consensus 314 LvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lm 393 (414)
T PF03390_consen 314 LVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELM 393 (414)
T ss_pred HHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhcccc
Confidence 6778988 9998887765666666777778888999999999999766555 5555567655 66788888888877776
Q ss_pred C
Q 038780 310 N 310 (694)
Q Consensus 310 ~ 310 (694)
+
T Consensus 394 p 394 (414)
T PF03390_consen 394 P 394 (414)
T ss_pred c
Confidence 5
No 71
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.71 E-value=0.51 Score=46.15 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHh-hhcccCCCchhHHHHHHHHHhh-ccHHHHH
Q 038780 9 FGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTIS-QILEPQEYLDDWIDLFTATTML-TSFPVVA 85 (694)
Q Consensus 9 ~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~-~~~~~~~~~~~~~l~ig~~ls~-Ts~~vv~ 85 (694)
+.+.+.||..|+++|++++++..|+...+ +.+.+.-+++. +.++.+. .... .......|..+.. +.-+..+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l-~~~l~~~~~i~Plla~~l~~~~~~-----~~~~~~~Gl~l~~~~P~~~~s 75 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLL-LIGLLAQFLIMPLLAFGLAWLLLP-----LSPALALGLLLVAACPGGPAS 75 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHH-HHHHHHHHHHHHHHHHHHH-HHTT-------HHHHHHHHHHHHS-B-THH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHhcCCcHHHH
Confidence 45788999999999999999877665432 22333333433 3333333 1111 1222333333321 1111222
Q ss_pred HHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038780 86 CFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMD 124 (694)
Q Consensus 86 ~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~ 124 (694)
.+...+ .+.+.. ++++...++.+.+.+++-+...+.
T Consensus 76 ~~~t~l--~~Gd~~-ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 76 NVFTYL--AGGDVA-LSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp HHHHHH--TT--HH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--hCCCcc-cccceeeHHHHHHHHHHHHHHHHH
Confidence 222222 222332 666667777777777765544433
No 72
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=95.60 E-value=3.1 Score=43.87 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhccHHHHH
Q 038780 7 TIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTSFPVVA 85 (694)
Q Consensus 7 a~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~vv~ 85 (694)
-.+|+++.|+=.=+++|.+.+++..|+.= .-+.+..+-++++ .+.+.+.+...++.+ ....|.++-.- -|.++
T Consensus 53 iai~L~~MmYP~m~ki~~~~~~~v~k~~k-~L~lsL~~Nwii~P~lm~~la~~fl~~~p----ey~~GlILlgl-ApC~a 126 (342)
T COG0798 53 IAIGLILMMYPPMLKIDFEELKNVFKDPK-PLILSLFVNWIIGPLLMFALAWFFLPDEP----EYRAGLILLGL-APCIA 126 (342)
T ss_pred HHHHHHHHHhHHHhcCCHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHh-hhhHH
Confidence 35788888888888999999988776632 2234444555555 444444332221221 23333333211 12222
Q ss_pred HHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q 038780 86 CFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRLMFWIIRRT 163 (694)
Q Consensus 86 ~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~~~~~~ 163 (694)
-++.=-++.+.+.. .++..-.+||++.+++.+......-+. .+....++.++..+...+.+-++...+.+++..|.
T Consensus 127 MVivw~~La~Gd~~-~tlv~Va~n~l~qiv~y~~~~~~~l~v-~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 127 MVIVWSGLAKGDRE-LTLVLVAFNSLLQIVLYAPLGKFFLGV-ISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHHHHHhhccCcHh-hhhHHHHHHHHHHHHHHHHHHHHHHhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222233333333 455566789999998886554433221 12223445555554444444444444455555554
No 73
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.53 E-value=3.8 Score=42.95 Aligned_cols=105 Identities=10% Similarity=0.023 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhhccChHHHHhcchh--HHHHHHH-HH-HHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHh-hcc
Q 038780 6 LTIFGYIFFMFLIGVKMDLSLITKLGKR--EWCISLS-LM-FNLLLVGMICQTISQILEPQEYLDDWIDLFTATTM-LTS 80 (694)
Q Consensus 6 la~~G~i~llF~~Gle~d~~~l~~~~~~--~~~i~~~-~~-~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls-~Ts 80 (694)
+.-..+.+.||..|+.++++++++..++ ...+++. .+ +.|.+....+..++. ......|..+. ...
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l---------~~~~~~glvL~~~~P 79 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKL---------PPELAVGVLIVGCCP 79 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHHheeeCC
Confidence 3344488899999999999999887663 3433333 22 345433233333321 12233333332 222
Q ss_pred HHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 81 FPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYNY 122 (694)
Q Consensus 81 ~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~~ 122 (694)
.++.+.++.++- +. -..++.+...++-+++.+.+-+...
T Consensus 80 ~~~~s~v~t~~~--~g-n~~la~~~~~~stlls~vt~Pl~l~ 118 (286)
T TIGR00841 80 GGTASNVFTYLL--KG-DMALSISMTTCSTLLALGMMPLLLY 118 (286)
T ss_pred CchHHHHHHHHh--CC-CHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 222223333322 21 2345566666677777766644333
No 74
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.42 E-value=0.23 Score=57.80 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCC-CCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchh
Q 038780 174 TIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTG-PPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYP 252 (694)
Q Consensus 174 ~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~-~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~ 252 (694)
....++...++..++..+|+++++|=.++|+++... ...-+. .+.++.+. .+=+.++....|+++|++.+.......
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~la-elGvv~LLF~iGLel~~~~l~~~~~~~ 87 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHFS-ELGVVFLMFIIGLELNPSKLWQLRRSI 87 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344455555666778889999999999999988542 111111 12344432 455556666789999998875432221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhh
Q 038780 253 LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTV 291 (694)
Q Consensus 253 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~ 291 (694)
+.+....++.-++......+++|+++..++.+|..++.
T Consensus 88 -~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 88 -FGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11111111111212222345568999999888865543
No 75
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.38 E-value=0.13 Score=59.30 Aligned_cols=118 Identities=12% Similarity=0.085 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCc--hhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhH
Q 038780 176 FIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPL--ASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPL 253 (694)
Q Consensus 176 ~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~--~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~ 253 (694)
+++++..+++.+++.+|++.+++=.++|+++.....- ...-.+-.+.+ ..+.+++.....|+++|+..+... .+..
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~~-~~~~ 90 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRPA-LGPA 90 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHHH-HHHH
Confidence 3444445556677778888888888888887653110 00011223333 467788888889999999888654 1223
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhh
Q 038780 254 VFGMTIGLF-FKLIAVYLPAVWFNTHSTDAAALSLILTVKGIV 295 (694)
Q Consensus 254 ~~ii~~~~~-~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~ 295 (694)
..+....++ .=.+.++...++++++|.+++.+|.++++-...
T Consensus 91 ~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 91 LSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 333233322 233334555667899999999999988876544
No 76
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.32 Score=53.53 Aligned_cols=143 Identities=14% Similarity=0.139 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccC-C---CCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCC
Q 038780 174 TIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPT-G---PPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGL 249 (694)
Q Consensus 174 ~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~-~---~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~ 249 (694)
+..+++.+...+.+.+.+|+++++|=.++|+++.+ + ....++..+-+..++ + -++...+|+.+|+..+....
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelG--v--i~LlF~~GLE~~~~~l~~~~ 86 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELG--V--VFLLFLIGLEFDLERLKKVG 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHh--H--HHHHHHHHHCcCHHHHHHhc
Confidence 55566666777799999999999999999999987 2 223445555566654 2 23344579999999887653
Q ss_pred chhHHHHHHHHHHHHHHHH--HHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHH
Q 038780 250 SYPLVFGMTIGLFFKLIAV--YLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILI 323 (694)
Q Consensus 250 ~~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~ll 323 (694)
.........+.+..-++.+ +... +++.++.+++.+|..+..-.. -+++.+..|.|..+.+.-...+...++
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~ 159 (397)
T COG0475 87 RSVGLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVF 159 (397)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHH
Confidence 3311222222222222222 2223 589999999999988775432 122333344455544444443333333
No 77
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=94.92 E-value=2.9 Score=44.77 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhc-ccCCCchhHHHHHHHHHhhccHHH-HH
Q 038780 9 FGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQIL-EPQEYLDDWIDLFTATTMLTSFPV-VA 85 (694)
Q Consensus 9 ~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~-~~~~~~~~~~l~ig~~ls~Ts~~v-v~ 85 (694)
++++++||-.|++++++++++..|+...+ +.+.+..+++. ++++.+.... + ....+.+|..+-...+.. .+
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~-~~~~~~qfvi~Plla~~l~~l~~~-----~~p~l~~GliLv~~~Pgg~~S 120 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGL-ILSLFINWIIGPFLMFLLAWLFLR-----DLFEYIAGLILLGLARCIAMV 120 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHhcchHHHH
Confidence 35568999999999999998876664332 23333344443 3333333211 1 122355555553322222 22
Q ss_pred HHHHhcccccChhHHHHHHHHHHHHHHHHHHHH
Q 038780 86 CFLMHLKIINSELGHFALSTALLCDLQSVILVN 118 (694)
Q Consensus 86 ~iL~el~~~~s~~g~lals~a~i~Di~~~ill~ 118 (694)
-+.+.+ .+.+.. ++++.+.++-+++.+++-
T Consensus 121 ~v~T~l--AkGnva-lsv~lt~~stLl~~~~~P 150 (328)
T TIGR00832 121 FVWNQL--AKGDPE-YTLVLVAVNSLFQVFLYA 150 (328)
T ss_pred HHHHHH--cCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 223332 233433 555566666666665553
No 78
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.58 E-value=0.76 Score=49.06 Aligned_cols=157 Identities=9% Similarity=0.125 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHH-----hchhhhHHHHhhhhcccCCC--CchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCC
Q 038780 177 IVCLVIVVAVVGET-----VGIQYFYGPFIFGLTVPTGP--PLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGL 249 (694)
Q Consensus 177 il~~~l~~~~~ae~-----~g~~~~lGaf~~GL~i~~~~--p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~ 249 (694)
.+.+.+.+.++++. .++++.+=|.+.|+++.+.. +..+....-++ +....++-+=-+..|.++++.++...
T Consensus 10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~- 87 (335)
T TIGR00698 10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADV- 87 (335)
T ss_pred HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHh-
Confidence 33344444455443 36777777888899888742 22222222233 23345666667788999999988654
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCC-hhhHHHHHHHHHHHHHH
Q 038780 250 SYPLVFGMTIGLFFKLI-AVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRN-TGEFTVAVVLILILASI 327 (694)
Q Consensus 250 ~~~~~~ii~~~~~~K~~-~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~-~~~f~~lv~~~lltt~i 327 (694)
++..+.+.+....+-+. +.++..|.+|++++.+..++...+.=|...++...=..+.+-=+ .-.-+.+++.-.+..++
T Consensus 88 G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l 167 (335)
T TIGR00698 88 GPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFL 167 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHH
Confidence 34433333333333344 45555589999999999999988877777766655443332100 01122233334444555
Q ss_pred HHHHHHhh
Q 038780 328 IPIIVRKL 335 (694)
Q Consensus 328 ~~~l~~~l 335 (694)
-|++.+++
T Consensus 168 ~P~l~~~l 175 (335)
T TIGR00698 168 YPSIYHYA 175 (335)
T ss_pred HHHHHHHH
Confidence 66666554
No 79
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.42 E-value=0.48 Score=55.69 Aligned_cols=69 Identities=9% Similarity=-0.003 Sum_probs=47.1
Q ss_pred hhhhhhHHHhhhcccccccccccCCchh-HHHHHHHHHHHHHHHHHHHHHh--hCCChhHHHHHHHHhhhhhhh
Q 038780 225 TGLFLPLMATFCGLKSNLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVW--FNTHSTDAAALSLILTVKGIV 295 (694)
Q Consensus 225 ~~~f~PlFF~~~Gl~~dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~--~~~~~~~~~~lg~~m~~kG~~ 295 (694)
..+.+++-.+..|++++...+... |. ...+++.++..-++++.+.+++ .+++|..++.+|.++++-.-+
T Consensus 75 teIvL~I~LFa~Gl~L~~~~Lrr~--wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYMLKH--WVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 356667777779999999988765 44 3333444444444444445543 499999999999999987654
No 80
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=93.99 E-value=10 Score=40.53 Aligned_cols=259 Identities=14% Similarity=0.157 Sum_probs=133.0
Q ss_pred hccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhccHH--HHHHHHHhcccccC
Q 038780 20 VKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTSFP--VVACFLMHLKIINS 96 (694)
Q Consensus 20 le~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~--vv~~iL~el~~~~s 96 (694)
|.||.+.+-|...+-+...+.+++.-.+.| +++..++.... +..-....-.+|--...-+.| .++. +-.+....
T Consensus 126 LgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~-d~~m~~vlPIM~GG~GaGavPLS~iYs--~itg~s~~ 202 (438)
T COG3493 126 LGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQ-DTMMYVVLPIMGGGMGAGAVPLSEIYS--SITGGSQE 202 (438)
T ss_pred hhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChH-HeeeeEEeeeccCCCCCCcccHHHHHH--HHcCCCHH
Confidence 368888888888888777777777777777 77766654321 000000000000001111111 2222 11333445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cccch---------HH--------HHHHHHHHHHHHHHHHHHHHH
Q 038780 97 ELGHFALSTALLCDLQSVILVNSYNYMDII-----TNASI---------RV--------GIKAMALSLSLIVFVTIVLRR 154 (694)
Q Consensus 97 ~~g~lals~a~i~Di~~~ill~~~~~~~~~-----~~~~~---------~~--------~~~~~~~~~~~~~~~~~v~r~ 154 (694)
++=..++.+..+..+++++.-+++--+... +++.. .. -...+.... ...+.+|....
T Consensus 203 ~~~s~lipal~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~~~~ee~~~~~k~d~~~~g~G~-llA~~lf~~g~ 281 (438)
T COG3493 203 EYFSQLIPALTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKEATEEELEKEGKLDLKLMGAGM-LLACTLFMAGG 281 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccchhhhhhhhccCccHHHHHHHH-HHHHHHHHHHH
Confidence 666677888888888888887766544221 00000 00 011111111 12233333333
Q ss_pred HHHHHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhh-hhhhhhhHHH
Q 038780 155 LMFWIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTI-VTGLFLPLMA 233 (694)
Q Consensus 155 ~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~-~~~~f~PlFF 233 (694)
+...++. .| + + +...+ +.+.+-...++ +|+. -++=..++..| ...+.-|+.+
T Consensus 282 il~kf~~-~P-~----~-va~MI-----il~a~lk~~nl------------vp~~---i~~GA~~l~~F~sk~~t~~Lm~ 334 (438)
T COG3493 282 ILGKFIG-LP-G----P-VAFMI-----ILVAILKAANL------------VPKE---IEEGAKQLSQFFSKNLTWPLMA 334 (438)
T ss_pred HHHHhhc-CC-c----h-HHHHH-----HHHHHHHHhCc------------CCHH---HHHHHHHHHHHHHHhhHHHHHH
Confidence 3333332 23 1 1 11111 11111111111 2222 12222233333 3455556665
Q ss_pred hhhccc-ccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHH-HHHhhhh-hhhhhhhhccccccCCCC
Q 038780 234 TFCGLK-SNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAAL-SLILTVK-GIVELGTFGTNFNKQVRN 310 (694)
Q Consensus 234 ~~~Gl~-~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~l-g~~m~~k-G~~~li~~~~~~~~~~i~ 310 (694)
. +|.. +|+..+.....|.-+++.+...++-..+.++.+|+.|+-+-|+-.. |+.|+.+ |.-|+++++-+-+.++++
T Consensus 335 g-iGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 335 G-IGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLSAADRMELMP 413 (438)
T ss_pred h-hhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhhhcchhcccc
Confidence 4 6766 8888887666677555666667788899999999999765555544 4888876 556788888777777765
No 81
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=93.92 E-value=8.6 Score=41.87 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=52.4
Q ss_pred hhhhHHHHhhhhcccCCC------CchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchh-HHH-HHHHHHHHH
Q 038780 193 IQYFYGPFIFGLTVPTGP------PLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYP-LVF-GMTIGLFFK 264 (694)
Q Consensus 193 ~~~~lGaf~~GL~i~~~~------p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~-~~~-ii~~~~~~K 264 (694)
++...+|++.|+++.+.. ...++..+++.. +.+-+|.+..=+.+++..+.+. +. .++ +++-.++.=
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~----~sL~~fl~~almsl~l~~l~~~--a~Plliil~~q~i~~~ 320 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISG----ISLDLFLAMALMSLKLWVLADY--ALPLLIILAVQTILMV 320 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHH----HHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 456789999999987642 123444555554 4455555666667777777654 22 332 333333344
Q ss_pred HHHHHHHHHhhCCChhHHHHHHH
Q 038780 265 LIAVYLPAVWFNTHSTDAAALSL 287 (694)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~~lg~ 287 (694)
+...++..|..|-++ |+..++.
T Consensus 321 ~f~~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 321 LFAYFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHHHHHhhhhhCCCh-hHHHHhh
Confidence 556666778888776 6655544
No 82
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.70 E-value=0.74 Score=43.64 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhchh--hhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCch-h-H
Q 038780 178 VCLVIVVAVVGETVGIQ--YFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSY-P-L 253 (694)
Q Consensus 178 l~~~l~~~~~ae~~g~~--~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~-~-~ 253 (694)
+......+++.+.+|+. ..+||++++.++.-.....-.+-+.+..+. .-+.-..+|.+++...+.....+ . .
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~~----qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLALA----QVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHHH----HHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 44556667777888887 788998888877643211112222222222 22344578999987776543333 3 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccc
Q 038780 254 VFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTN 303 (694)
Q Consensus 254 ~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~ 303 (694)
+...+..++.-++.+++..+..++++.+++ +...+-|..|+.....-
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~---La~~PGGl~~m~~~A~~ 126 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF---LATSPGGASEMAALAAE 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCchHHHHHHHHHH
Confidence 555555666778888889999999999887 45778888877776543
No 83
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=93.67 E-value=0.94 Score=44.39 Aligned_cols=106 Identities=19% Similarity=0.343 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhhccCh-----HHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHh
Q 038780 4 YSLTIFGYIFFMFLIGVKMDL-----SLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTM 77 (694)
Q Consensus 4 ~~la~~G~i~llF~~Gle~d~-----~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls 77 (694)
+...+..+..++|.+|+++-- +.+++.+++++.+.+..++-+++.+ +++.+++. +..+++.++.-+.
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~-------~~~~~lav~sG~G 95 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGL-------SLKESLAVASGFG 95 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHccCc
Confidence 567889999999999998843 3567788999999999888888888 76666643 3556666654442
Q ss_pred hccHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHH
Q 038780 78 LTSFPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSY 120 (694)
Q Consensus 78 ~Ts~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~ 120 (694)
= +.....++.|++ +-++|.++.=+=++.|++++++.-++
T Consensus 96 w--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 96 W--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred H--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122222334433 56888887777777777776665433
No 84
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=93.34 E-value=0.47 Score=54.29 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCch-hHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHH
Q 038780 176 FIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLA-STLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLV 254 (694)
Q Consensus 176 ~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~-~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~ 254 (694)
..++.+.+...+++.+++++.++-.++|+++...+... -.+.. +.+ ..+++|......|+++|...+.... +...
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~-~~~~Lp~lLF~~g~~~~~~~l~~~~-~~i~ 80 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EIV-LFLFLPPLLFEAAMNTDLRELRENF-RPIA 80 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HHH-HHHHHHHHHHHHHhcCCHHHHHHHH-HHHH
Confidence 33444445556667777777777777777765321100 00111 112 2467888888899999999887642 2222
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhh
Q 038780 255 FGMT-IGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVEL 297 (694)
Q Consensus 255 ~ii~-~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l 297 (694)
.+.+ ..++.-.+.++...+..++|+..++.+|.++++-..+..
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 2222 223333444444444679999999999999998776554
No 85
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.32 E-value=1.2 Score=53.83 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=23.0
Q ss_pred ceeEEEEeccCCcchH-HHHHHHHHH--HhCCCeEEEEEEEee
Q 038780 527 FVYRLAVLYMGGEDDM-EALAYARRM--ARSSRVHLTVIHFTL 566 (694)
Q Consensus 527 ~~~~I~~~f~gg~ddr-eAl~~a~rm--a~~~~v~ltv~~~~~ 566 (694)
+..||++.+- ++|+- -.+.++... .+.....+.++|+++
T Consensus 457 ~elriL~cv~-~~~~v~~li~Lle~s~~t~~sp~~vy~lhLve 498 (832)
T PLN03159 457 AELRMLVCVH-TPRNVPTIINLLEASHPTKRSPICIYVLHLVE 498 (832)
T ss_pred CceeEEEEec-cCCcHHHHHHHHHhcCCCCCCCceEEEEEEEe
Confidence 3568866655 55554 445554443 233447888888865
No 86
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=93.27 E-value=0.49 Score=55.02 Aligned_cols=126 Identities=16% Similarity=0.141 Sum_probs=81.8
Q ss_pred CCCceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhH
Q 038780 356 NDDLRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKA 435 (694)
Q Consensus 356 ~~~lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 435 (694)
....|||||++...+...+++-+..++..- ....+++|+..-..+..+ + ...+-++.-.+.++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~--~a~~~av~v~~~~~~~~~-----~----------~~~~~l~~~~~Lae 308 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRL--HAKWTAVYVETPELHRLS-----E----------KEARRLHENLRLAE 308 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHh--CCCeEEEEEecccccccc-----H----------HHHHHHHHHHHHHH
Confidence 445799999999999999999999888543 456899998542211111 0 11223333344554
Q ss_pred hCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCC-cEEEE
Q 038780 436 EHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPS-SVGIL 510 (694)
Q Consensus 436 ~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~Apc-sVgIl 510 (694)
+-.+ +..+..+ .++.+.|.+.|++++++-||+|=+.+++-. ....+++.+++++++|- +|-|+
T Consensus 309 ~lGa----e~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~------~~~~~~l~~~L~~~~~~idv~ii 372 (890)
T COG2205 309 ELGA----EIVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWR------RLFKGSLADRLAREAPGIDVHIV 372 (890)
T ss_pred HhCC----eEEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHH------HHhcccHHHHHHhcCCCceEEEe
Confidence 4222 2233455 899999999999999999999976543211 11125588999999863 44343
No 87
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=92.65 E-value=0.32 Score=40.71 Aligned_cols=50 Identities=20% Similarity=0.029 Sum_probs=38.3
Q ss_pred CchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEE
Q 038780 454 VMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVG 508 (694)
Q Consensus 454 ~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVg 508 (694)
.+++-+.+.|++.+++.|++|.|.....+..+.+. .+..++.++++|+|.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~-----~~~~~~~~~~~~~vl 84 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGAS-----ANVLVVIKGAGIPVL 84 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCch-----hhhhhcccccCCcee
Confidence 88899999999999999999998775443332210 356788999999953
No 88
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=92.58 E-value=17 Score=38.96 Aligned_cols=43 Identities=16% Similarity=0.357 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHH
Q 038780 6 LTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MIC 52 (694)
Q Consensus 6 la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~ 52 (694)
+=++|++ +.|.+++++++.+.+.+.+.+.+..+...+.++ .++
T Consensus 67 lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g 110 (335)
T TIGR00698 67 LLRIGIT----LYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHH----HHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555 458899999999999988877666666666555 444
No 89
>PRK10490 sensor protein KdpD; Provisional
Probab=91.89 E-value=0.45 Score=58.14 Aligned_cols=125 Identities=11% Similarity=0.112 Sum_probs=76.4
Q ss_pred ceeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEEEEe
Q 038780 527 FVYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAV 606 (694)
Q Consensus 527 ~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v 606 (694)
...||++...|+|..+..++.+.|||+..++.++++||.+++....+..+++.-.+.++ +..+. +.+.+......|
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~-lA~~l---Ga~~~~~~~~dv 324 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALR-LAQEL---GAETATLSDPAE 324 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHH-HHHHc---CCEEEEEeCCCH
Confidence 35789999999999999999999999999999999999866322111112211122222 33322 122111111111
Q ss_pred cCchHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038780 607 KDGSDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQ 673 (694)
Q Consensus 607 ~~g~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvq 673 (694)
.+.++++.++ .+.+-|++|++++.. | + --|-+.|-|... ..+.-|.||-
T Consensus 325 --a~~i~~~A~~--~~vt~IViG~s~~~~---------~--~-~~~s~~~~l~r~--~~~idi~iv~ 373 (895)
T PRK10490 325 --EKAVLRYARE--HNLGKIIIGRRASRR---------W--W-RRESFADRLARL--GPDLDLVIVA 373 (895)
T ss_pred --HHHHHHHHHH--hCCCEEEECCCCCCC---------C--c-cCCCHHHHHHHh--CCCCCEEEEe
Confidence 1345566666 788999999987531 5 1 134677777754 3455777774
No 90
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=91.03 E-value=26 Score=37.92 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=69.7
Q ss_pred HHHHHHHHHhc-----hhhhHHHHhhhhcccCCCCch--hHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHH
Q 038780 182 IVVAVVGETVG-----IQYFYGPFIFGLTVPTGPPLA--STLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLV 254 (694)
Q Consensus 182 l~~~~~ae~~g-----~~~~lGaf~~GL~i~~~~p~~--~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~ 254 (694)
.+..++.+.++ ++...++++.|.++.+.-+.. .++.++.-+...++-+-+|.+..=|++.+..+.+...-.++
T Consensus 232 ~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~v 311 (404)
T COG0786 232 AVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLV 311 (404)
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 33455566655 456789999999988752111 11233333333466677888877788887777653111133
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhh-hhhhhhhhhcc
Q 038780 255 FGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTV-KGIVELGTFGT 302 (694)
Q Consensus 255 ~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~-kG~~~li~~~~ 302 (694)
++.+-..+.-+.+.+...|..|-++..+...+.-+.. -|...-+++++
T Consensus 312 iL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 312 ILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 3334444456667777888888887666653333332 24444445443
No 91
>TIGR00930 2a30 K-Cl cotransporter.
Probab=90.58 E-value=52 Score=40.63 Aligned_cols=132 Identities=11% Similarity=0.018 Sum_probs=78.9
Q ss_pred CCCCceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHh
Q 038780 355 SNDDLRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFK 434 (694)
Q Consensus 355 ~~~~lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~ 434 (694)
.+-+-++|+.+.+|++-+.+++++..+. |... -..+-|+++-+.+.. .+ +.++..++.+.+-
T Consensus 572 knwrPqiLvl~~~p~~~~~Ll~f~~~l~--~~~g-l~i~~~v~~~~~~~~-----~~----------~~~~~~~~~~~~~ 633 (953)
T TIGR00930 572 KNWRPQCLVLTGPPVCRPALLDFASQFT--KGKG-LMICGSVIQGPRLEC-----VK----------EAQAAEAKIQTWL 633 (953)
T ss_pred cccCCeEEEEeCCCcCcHHHHHHHHHhc--cCCc-EEEEEEEecCchhhh-----HH----------HHHHHHHHHHHHH
Confidence 4556799999999999999999999999 3333 345568887322111 00 1122233334343
Q ss_pred HhCCCceEEEEEEEEcCCCCchHHHHHHHHhc-----CccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEE
Q 038780 435 AEHPKFVQVQVFSAISPPKVMHEDICWLAFDK-----SISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGI 509 (694)
Q Consensus 435 ~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~-----~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgI 509 (694)
++ . +++.|..+-...++.+++.++.+-- +.+.++|||...|..+... .... +-+..+.. -++...|.|
T Consensus 634 ~~--~--~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~-~~~~-y~~~i~~a-~~~~~~v~i 706 (953)
T TIGR00930 634 EK--N--KVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR-AWET-YIGIIHDA-FDAHLAVVV 706 (953)
T ss_pred HH--h--CCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch-hHHH-HHHHHHHH-HHcCCcEEE
Confidence 32 1 2233333333489999999998874 6899999999988754321 1122 33333333 244566555
Q ss_pred Ee
Q 038780 510 LI 511 (694)
Q Consensus 510 lv 511 (694)
+.
T Consensus 707 ~r 708 (953)
T TIGR00930 707 VR 708 (953)
T ss_pred Ec
Confidence 54
No 92
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=90.22 E-value=2.2 Score=46.38 Aligned_cols=113 Identities=16% Similarity=-0.026 Sum_probs=63.0
Q ss_pred hhhhhHHHhhhcccccccccccCCchh--HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhh-hhhcc
Q 038780 226 GLFLPLMATFCGLKSNLRDLSKGLSYP--LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVEL-GTFGT 302 (694)
Q Consensus 226 ~~f~PlFF~~~Gl~~dl~~l~~~~~~~--~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l-i~~~~ 302 (694)
++|+-.||+.+|+..++..+....... ...+.....+...+.....+..++.++.-++..|..--..|+=.. +....
T Consensus 67 ~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~ 146 (368)
T PF03616_consen 67 DFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGPT 146 (368)
T ss_pred HHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHHHH
Confidence 457778999999999988776542111 222222334456666666677888887766655421112232222 22223
Q ss_pred cccc-CCCChhhHHHHH--HHHHHHHHHHHHHHHhhccc
Q 038780 303 NFNK-QVRNTGEFTVAV--VLILILASIIPIIVRKLHDF 338 (694)
Q Consensus 303 ~~~~-~~i~~~~f~~lv--~~~lltt~i~~~l~~~l~~p 338 (694)
..+. |.-+.....+.. +-.+.-.+++.|+.+++.|+
T Consensus 147 fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk 185 (368)
T PF03616_consen 147 FEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRK 185 (368)
T ss_pred HHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333 554433333322 22344567789999999854
No 93
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=89.38 E-value=16 Score=36.42 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=77.3
Q ss_pred hHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchh-HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhh
Q 038780 214 STLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVK 292 (694)
Q Consensus 214 ~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~k 292 (694)
+.+..-+++-+-.+-+|+| =++..+..+ |. ...-++++.+.-++.+++.++++|.+.. +-..+.+|
T Consensus 62 ~~i~~lLgPAtVAlAvPLY-------kq~~~ik~~--w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~Pk 128 (230)
T COG1346 62 QWINFLLGPATVALAVPLY-------KQRHLIKRH--WKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLPK 128 (230)
T ss_pred HHHHHHHHHHHHHHhhHHH-------HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhccc
Confidence 3444455555545666666 233445443 55 6666666777788888999999998864 23457899
Q ss_pred hhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q 038780 293 GIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIPIIVRKLH 336 (694)
Q Consensus 293 G~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~~l~~~l~ 336 (694)
....=+...+..+.|-+++-+-..+++.-++...++|++.+++-
T Consensus 129 SvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~~ 172 (230)
T COG1346 129 SVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLLR 172 (230)
T ss_pred ccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988776666666677777777888888763
No 94
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=89.33 E-value=0.92 Score=47.44 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=71.3
Q ss_pred hhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccc
Q 038780 224 VTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTN 303 (694)
Q Consensus 224 ~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~ 303 (694)
.++++=|+-|..+|..+|++.+...+ +. .++-..+-+| +..+++.+...|++.+|+-.+|.+=..-|-..+.+.+.-
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllanP-~~-~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~L 143 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLANP-KT-LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKL 143 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhCH-HH-HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhh
Confidence 46888889999999999998876653 32 2222222222 345566677789999999999999888898888777532
Q ss_pred cccCCCChhhHHHHHHH----HHHHHHHHHHHHHhhcccc
Q 038780 304 FNKQVRNTGEFTVAVVL----ILILASIIPIIVRKLHDFS 339 (694)
Q Consensus 304 ~~~~~i~~~~f~~lv~~----~lltt~i~~~l~~~l~~p~ 339 (694)
.++.+..+.+. .-+.=.+-||++|.+-.++
T Consensus 144 ------Ap~LlgpIaVaAYsYMaLvPiiqPpimklLttkk 177 (360)
T PF03977_consen 144 ------APHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKK 177 (360)
T ss_pred ------hHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHH
Confidence 23333332221 2233456799999887543
No 95
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=88.96 E-value=7.9 Score=37.13 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHH---HHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHH-
Q 038780 2 NLYSLTIFGYIFFMFLIGVKMDLSL---ITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATT- 76 (694)
Q Consensus 2 ~l~~la~~G~i~llF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~l- 76 (694)
..+.+.++|+.+|++.+|++--++- +++.+.+....++.-.++|.+++ ..++++.+ .......|...
T Consensus 51 ~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~--------l~~~~~~G~~aG 122 (169)
T PF06826_consen 51 APSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFK--------LNPGIAAGILAG 122 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHc
Confidence 3467899999999999999888765 55666677777777777777777 66653322 23344555544
Q ss_pred hhccHHHHHHHHHh
Q 038780 77 MLTSFPVVACFLMH 90 (694)
Q Consensus 77 s~Ts~~vv~~iL~e 90 (694)
+.|++|.+....+.
T Consensus 123 a~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 123 ALTSTPALAAAQEA 136 (169)
T ss_pred cccCcHHHHHHHHh
Confidence 56888888776544
No 96
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=87.90 E-value=4.1 Score=43.30 Aligned_cols=130 Identities=11% Similarity=0.042 Sum_probs=80.5
Q ss_pred hhhhhhhhhHHHhhhcccccccccccCCchhHHHH-HHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhh
Q 038780 222 TIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFG-MTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTF 300 (694)
Q Consensus 222 ~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~i-i~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~ 300 (694)
.+.++++=|+-|..+|..+|++.+...+ +. .++ -..+-+|- ..+++.+...|++.+|+-.+|.+=..-|-..+.+.
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP-~~-~ll~gaaAQ~Gi-F~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARP-WA-SITVALFAEMGT-FATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhCh-HH-HHHHHHHHHhhH-HHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 3457888899999999999998886653 22 222 12333333 34455566789999999999999888898888777
Q ss_pred ccccccCCCChhhHHHHHH----HHHHHHHHHHHHHHhhcccc-CCCCCc-ccccccCCCCCCCceEEEEe
Q 038780 301 GTNFNKQVRNTGEFTVAVV----LILILASIIPIIVRKLHDFS-NTYPGY-QQRNILHGASNDDLRILVCT 365 (694)
Q Consensus 301 ~~~~~~~~i~~~~f~~lv~----~~lltt~i~~~l~~~l~~p~-~~~~~~-~~r~i~~~~~~~~lrILv~v 365 (694)
+.- .++.+..+.+ +.-+.=.+-||++|.+-.++ |+.+-+ +.|.+ ....||+.|+
T Consensus 178 ~kL------Ap~Llg~IaVAAYsYMaLVPiiqPpimklLttkkER~I~M~~~~r~V-----Sk~eKilFpi 237 (399)
T TIGR03136 178 LIL------AKDLFVPISIIAYLYLSLTYAGYPYLIKLLVPKKYRGLEVEMEFPDV-----SQRAKFVFTI 237 (399)
T ss_pred Hhh------hhHhHHHHHHHHHHHHHHHhcccchHHHhhcCHHHHcccCccCCCCC-----CccchhHHHH
Confidence 632 2333322222 12233455799999887443 333222 44432 2345676654
No 97
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=87.52 E-value=50 Score=36.37 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=53.9
Q ss_pred chhhhHHHHhhhhcccCCCC------chhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchh-HHHHHHHHHHH-
Q 038780 192 GIQYFYGPFIFGLTVPTGPP------LASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYP-LVFGMTIGLFF- 263 (694)
Q Consensus 192 g~~~~lGaf~~GL~i~~~~p------~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~-~~~ii~~~~~~- 263 (694)
.++...+|++.|+++.+.-+ ..++..+++. ++.+-+|.+..=|.+++..+.+. |. .+++++..++.
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~----~~sLdlfl~~AlmsL~L~~l~~~--a~Plliil~~q~i~~ 317 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIG----NVSLSLFLAIALMSLQLWELADL--AGPIALILLVQVMFM 317 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHH----HHHHHHHHHHHHHhCcHHHHHHH--HHHHHHHHHHHHHHH
Confidence 36778999999999987422 2223444444 55666777777778888888654 33 33333333333
Q ss_pred HHHHHHHHHHhhCCChhHHHHHHH
Q 038780 264 KLIAVYLPAVWFNTHSTDAAALSL 287 (694)
Q Consensus 264 K~~~~~l~~~~~~~~~~~~~~lg~ 287 (694)
=+...++..|..|-+ .|+-.+..
T Consensus 318 ~l~~~fv~fr~mg~~-ydaaV~~a 340 (398)
T TIGR00210 318 ALYAIFVTFRLMGKD-YDAAVLCA 340 (398)
T ss_pred HHHHHHHhHHhccch-HHHHHHhc
Confidence 334556667777766 66665433
No 98
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=87.35 E-value=17 Score=36.56 Aligned_cols=108 Identities=10% Similarity=0.095 Sum_probs=69.7
Q ss_pred HHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchh-HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhh
Q 038780 215 TLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKG 293 (694)
Q Consensus 215 ~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG 293 (694)
.+..-+++-+-.+-+|+| -+.+.+..+ |. ...-++++.+.-+.++++.++++|.+.. +-..|.+|.
T Consensus 66 ~l~~lLgPAtVALAvPLY-------~q~~~lk~~--~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKS 132 (232)
T PRK04288 66 IISFFLEPATIAFAIPLY-------KKRDVLKKY--WWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQA 132 (232)
T ss_pred HHHHHHHHHHHHHHHHHH-------HhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHh
Confidence 334444444445555665 233444433 43 5555556666777888888999988863 345688999
Q ss_pred hhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhh
Q 038780 294 IVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIPIIVRKL 335 (694)
Q Consensus 294 ~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~~l~~~l 335 (694)
...=+...+..+.|-+.+-+-..+++.-++-..++|++.+++
T Consensus 133 VTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 133 ATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 988888888888887665555555555666666677777765
No 99
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=86.20 E-value=15 Score=38.96 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHH-HHHhhhcccCCCchhHHHHHHHHHhh---c
Q 038780 5 SLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MIC-QTISQILEPQEYLDDWIDLFTATTML---T 79 (694)
Q Consensus 5 ~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~-~~l~~~~~~~~~~~~~~l~ig~~ls~---T 79 (694)
.+=++|++ +.|.++++.++.+.+.+.+.+....+...+.++ .++ ..++. +...+.+++.-.|+ +
T Consensus 60 ~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l-------~~~~~~Lia~GtsICG~S 128 (305)
T PF03601_consen 60 KLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGL-------DRKLAILIAAGTSICGAS 128 (305)
T ss_pred HHHHHHHH----HHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHHhhcccchHH
Confidence 34455655 458999999999999998888777777777776 555 55543 23344555444443 3
Q ss_pred cHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHH
Q 038780 80 SFPVVACFLMHLKIINSELGHFALSTALLCDLQSVILV 117 (694)
Q Consensus 80 s~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill 117 (694)
+...+.++++-. +.+ -..+++.-.+=...+.+++
T Consensus 129 Ai~A~a~~i~a~---~~~-~a~ava~V~lfg~vam~~~ 162 (305)
T PF03601_consen 129 AIAATAPVIKAK---EED-VAYAVATVFLFGTVAMFLY 162 (305)
T ss_pred HHHHHcccccCC---CCc-eeeeehHHHHHHHHHHHHH
Confidence 444444444321 222 2234444444444444444
No 100
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=85.99 E-value=2.7 Score=49.18 Aligned_cols=125 Identities=20% Similarity=0.248 Sum_probs=75.9
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCc-EEEEEEEe
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLN-IIYKEEAV 606 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~-v~y~e~~v 606 (694)
..+|++...|++....-++.|.|+|...+++.|++|+.+++.....+.+++.-++.++=-+ .- +.+. ..|.+ .+
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae-~l---Gae~~~l~~~-dv 322 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAE-EL---GAEIVTLYGG-DV 322 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHH-Hh---CCeEEEEeCC-cH
Confidence 4689888889999999999999999999999999999877543332223222222222221 11 1221 22221 11
Q ss_pred cCchHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038780 607 KDGSDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQ 673 (694)
Q Consensus 607 ~~g~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvq 673 (694)
..++.+..+. .+.--|++|+++.. -|.+.-. |.+.|-|+.. .....+-+|-
T Consensus 323 --~~~i~~ya~~--~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~--~~~idv~ii~ 373 (890)
T COG2205 323 --AKAIARYARE--HNATKIVIGRSRRS---------RWRRLFK-GSLADRLARE--APGIDVHIVA 373 (890)
T ss_pred --HHHHHHHHHH--cCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhc--CCCceEEEee
Confidence 1234445554 66789999999864 3643222 7788888854 3334455543
No 101
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=85.49 E-value=42 Score=36.89 Aligned_cols=113 Identities=16% Similarity=0.038 Sum_probs=68.2
Q ss_pred hhhhhHHHhhhcccccccccccCCchh--HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccc
Q 038780 226 GLFLPLMATFCGLKSNLRDLSKGLSYP--LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTN 303 (694)
Q Consensus 226 ~~f~PlFF~~~Gl~~dl~~l~~~~~~~--~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~ 303 (694)
++|+-+||+.+|+..+++.+....... ...+..+..+...+.....+..+|+++.-++..|-.--.-|+=.-+...-.
T Consensus 67 ~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~~ 146 (398)
T TIGR00210 67 DPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSPV 146 (398)
T ss_pred HHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHHH
Confidence 578889999999999998776542222 223333355677777777788999998877764422222233222222222
Q ss_pred c-c-cCCCChhhHHHH--HHHHHHHHHHHHHHHHhhccc
Q 038780 304 F-N-KQVRNTGEFTVA--VVLILILASIIPIIVRKLHDF 338 (694)
Q Consensus 304 ~-~-~~~i~~~~f~~l--v~~~lltt~i~~~l~~~l~~p 338 (694)
+ + .|.-+.....+. .+-.+..++++.|+.+++.|+
T Consensus 147 f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk 185 (398)
T TIGR00210 147 FYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIR 185 (398)
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 2 455443333332 233566677889999998843
No 102
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=84.59 E-value=4.5 Score=39.66 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=61.0
Q ss_pred HHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccc---cccccCCchhHHHHHHHHHHHHHHHHHHHHH
Q 038780 197 YGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNL---RDLSKGLSYPLVFGMTIGLFFKLIAVYLPAV 273 (694)
Q Consensus 197 lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl---~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 273 (694)
++++++|+++....+......+++... .+.+-+|++.+.+.-|- +.+... .|..+.+-+..+++-++++++.++
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~~~~~~~--~L~lLLF~VGi~lG~~~~~l~~l~~~-g~~~Llipl~tIlGSllgg~l~~~ 78 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLIDKISTY--ALYLLLFLVGIDLGSNREILRQLRSL-GKRALLIPLATILGSLLGGLLASL 78 (191)
T ss_pred eeeHHHHHHHHHHhcccccccccHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666654422221222333332 34444555433333342 222221 344677777888899999999999
Q ss_pred hhCCChhHHHHHHHHhhhhhhhhhhhhc
Q 038780 274 WFNTHSTDAAALSLILTVKGIVELGTFG 301 (694)
Q Consensus 274 ~~~~~~~~~~~lg~~m~~kG~~~li~~~ 301 (694)
+.++|++|++.++..+.=-......+..
T Consensus 79 ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 79 LLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 9999999999998877655555555443
No 103
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=84.10 E-value=13 Score=41.29 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHhhhhccc-CC-CCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhH
Q 038780 176 FIVCLVIVVAVVGETVGIQYFYGPFIFGLTVP-TG-PPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPL 253 (694)
Q Consensus 176 ~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~-~~-~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~ 253 (694)
+++.+...++.+++.+..+.+.-+.+.|+... .. .+......-.-|.+. .+++|+-....|+++|.+.+...+ +..
T Consensus 13 lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~-~l~l~ilLf~~g~~l~~~~l~~~~-~~I 90 (429)
T COG0025 13 LILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFL-VLFLAILLFAGGLELDLRELRRVW-RSI 90 (429)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHH-HHHHHHHHHHhHhcCCHHHHHHhH-HHH
Confidence 33344444455555555554444444444432 11 111111111111222 566777777799999999887652 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--CCChhHHHHHHHHhhhhhhhhhhhh
Q 038780 254 VFGMTIGLFFKLIAVYLPAVWF--NTHSTDAAALSLILTVKGIVELGTF 300 (694)
Q Consensus 254 ~~ii~~~~~~K~~~~~l~~~~~--~~~~~~~~~lg~~m~~kG~~~li~~ 300 (694)
..+.....+...++.....++. ++|+..++.+|.++++-.-+.+.-.
T Consensus 91 ~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i 139 (429)
T COG0025 91 LVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPI 139 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHH
Confidence 4444444444455555555555 8999999999999998776655443
No 104
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=82.55 E-value=0.44 Score=52.05 Aligned_cols=112 Identities=16% Similarity=0.263 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCch--hHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHHHH
Q 038780 179 CLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLA--STLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFG 256 (694)
Q Consensus 179 ~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~--~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~i 256 (694)
+..+++..+.+.++++.++|-.++|+++.... +. +.-.+-++.+ ..+.+++.....|+++|...+.... +....+
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~~~-~~~~~~ 82 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRRNW-RRALAL 82 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccccc-cccccc
Confidence 33445555789999999999999999998763 22 1112344444 4677777777899999999886542 223333
Q ss_pred HHHHHHHHHHH-HHHHHH---hhCCChhHHHHHHHHhhhhh
Q 038780 257 MTIGLFFKLIA-VYLPAV---WFNTHSTDAAALSLILTVKG 293 (694)
Q Consensus 257 i~~~~~~K~~~-~~l~~~---~~~~~~~~~~~lg~~m~~kG 293 (694)
.+..++.-++. ++.... ..++++.+++.+|..+++-.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp -------------------------------TTHHHHTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 33333334444 444443 47889999999998887543
No 105
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=81.82 E-value=41 Score=33.86 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 038780 253 LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIPIIV 332 (694)
Q Consensus 253 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~~l~ 332 (694)
....+.++.+.-+..+++.++.+|.+.. +...+.+|....=+...+..+.|-..+-+-..+++.-++-..++|++.
T Consensus 90 Il~~~~~G~~~~~~s~~~la~~lg~~~~----i~~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll 165 (226)
T TIGR00659 90 IILNVAVGSVIAIISGTLLALLLGLGPE----IIASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVL 165 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555666777888889888743 224688999888888888877776544444444445555555667777
Q ss_pred Hhh
Q 038780 333 RKL 335 (694)
Q Consensus 333 ~~l 335 (694)
+++
T Consensus 166 ~~~ 168 (226)
T TIGR00659 166 RYF 168 (226)
T ss_pred HHc
Confidence 665
No 106
>PRK10711 hypothetical protein; Provisional
Probab=80.27 E-value=35 Score=34.41 Aligned_cols=79 Identities=8% Similarity=0.053 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 038780 253 LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIPIIV 332 (694)
Q Consensus 253 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~~l~ 332 (694)
...-+.++.+.-++.+++.++.+|.+.. +...|.+|....=+...+..+.|-+.+-+-..+++.-++-..++|++.
T Consensus 91 I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~ll 166 (231)
T PRK10711 91 IISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLL 166 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666677888888999988764 334588999888888888888776654444444444555555667777
Q ss_pred Hhh
Q 038780 333 RKL 335 (694)
Q Consensus 333 ~~l 335 (694)
+++
T Consensus 167 k~~ 169 (231)
T PRK10711 167 NAM 169 (231)
T ss_pred HHc
Confidence 665
No 107
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=80.24 E-value=1.8 Score=45.77 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=76.7
Q ss_pred hhhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHh-----hCCChhHHHHHHHHhhhhhhhhh
Q 038780 223 IVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVW-----FNTHSTDAAALSLILTVKGIVEL 297 (694)
Q Consensus 223 ~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lg~~m~~kG~~~l 297 (694)
+.++++=|+-|..+|..+|++.+...+. .+++-..+-+|-+.....+..+ .|++.+|+-.+|.+=..-|-.++
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~--~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPR--TLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHH--HHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Confidence 4568888999999999999988766532 1222222223322222222222 37999999999998888888888
Q ss_pred hhhccccccCCCC---hhhHHHHHHHHHHHHHHHHHHHHhhcccc-CCCCCcccccccCCCCCCCceEEEEe
Q 038780 298 GTFGTNFNKQVRN---TGEFTVAVVLILILASIIPIIVRKLHDFS-NTYPGYQQRNILHGASNDDLRILVCT 365 (694)
Q Consensus 298 i~~~~~~~~~~i~---~~~f~~lv~~~lltt~i~~~l~~~l~~p~-~~~~~~~~r~i~~~~~~~~lrILv~v 365 (694)
.+.+.-- -.++. -..|+-| -+.=++-||+.|.+-.++ |+.+-++.|++ ....||+.|+
T Consensus 209 fvsskLA-P~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~V-----Sk~eKIlFPi 270 (433)
T PRK15475 209 YLSGKLA-PELLGAIAVAAYSYM----ALVPLIQPPIMKALTTETERKIRMVQLRTV-----SKREKILFPV 270 (433)
T ss_pred HhHhhhh-hHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCC-----CccchhHHHH
Confidence 7765321 11222 2223222 223455799999887443 44444444433 2345777665
No 108
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=80.19 E-value=1.8 Score=45.77 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=76.6
Q ss_pred hhhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHh-----hCCChhHHHHHHHHhhhhhhhhh
Q 038780 223 IVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVW-----FNTHSTDAAALSLILTVKGIVEL 297 (694)
Q Consensus 223 ~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lg~~m~~kG~~~l 297 (694)
+.++++=|+-|..+|..+|++.+...+. .+++-..+-+|-+.....+..+ .|++.+|+-.+|.+=..-|-.++
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~--~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPR--TLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHH--HHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Confidence 4568888999999999999988766532 1222222223322222222222 37999999999998888888888
Q ss_pred hhhccccccCCCC---hhhHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCCcccccccCCCCCCCceEEEEe
Q 038780 298 GTFGTNFNKQVRN---TGEFTVAVVLILILASIIPIIVRKLHDF-SNTYPGYQQRNILHGASNDDLRILVCT 365 (694)
Q Consensus 298 i~~~~~~~~~~i~---~~~f~~lv~~~lltt~i~~~l~~~l~~p-~~~~~~~~~r~i~~~~~~~~lrILv~v 365 (694)
.+.+.-- -+++. -..|+-| -+.=++-||+.|.+-.+ +|+.+-++.|++ ....||+.|+
T Consensus 209 fvsskLA-P~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~V-----Sk~eKIlFPi 270 (433)
T PRK15476 209 YLSGKLA-PELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKIRMVQLRTV-----SKREKILFPV 270 (433)
T ss_pred HhHhhhh-hHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCC-----CccchhHHHH
Confidence 7765321 11222 2222222 23345679999988744 344444444433 2345777665
No 109
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=80.19 E-value=1.8 Score=45.77 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=76.6
Q ss_pred hhhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHh-----hCCChhHHHHHHHHhhhhhhhhh
Q 038780 223 IVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVW-----FNTHSTDAAALSLILTVKGIVEL 297 (694)
Q Consensus 223 ~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lg~~m~~kG~~~l 297 (694)
+.++++=|+-|..+|..+|++.+...+. .+++-..+-+|-+.....+..+ .|++.+|+-.+|.+=..-|-.++
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~--~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsI 208 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPR--TLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAI 208 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHH--HHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHH
Confidence 3568888899999999999988766532 1222222223322222222222 37999999999998888888888
Q ss_pred hhhccccccCCCC---hhhHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCCcccccccCCCCCCCceEEEEe
Q 038780 298 GTFGTNFNKQVRN---TGEFTVAVVLILILASIIPIIVRKLHDF-SNTYPGYQQRNILHGASNDDLRILVCT 365 (694)
Q Consensus 298 i~~~~~~~~~~i~---~~~f~~lv~~~lltt~i~~~l~~~l~~p-~~~~~~~~~r~i~~~~~~~~lrILv~v 365 (694)
.+.+.-- -+++. -..|+-| -+.=++-||+.|.+-.+ +|+.+-++.|++ ....||+.|+
T Consensus 209 fvsskLA-P~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I~M~~lr~V-----Sk~eKIlFPi 270 (433)
T PRK15477 209 YLSGKLA-PELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKIRMVQLRTV-----SKREKILFPV 270 (433)
T ss_pred HhHhhhh-hHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCccCCCCCCC-----CccchhHHHH
Confidence 7765321 11222 2222222 23345679999988744 344444444433 2345777665
No 110
>PRK03818 putative transporter; Validated
Probab=79.91 E-value=20 Score=41.22 Aligned_cols=79 Identities=18% Similarity=0.240 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHhhccChHH---HHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHH-h
Q 038780 3 LYSLTIFGYIFFMFLIGVKMDLSL---ITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATT-M 77 (694)
Q Consensus 3 l~~la~~G~i~llF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~l-s 77 (694)
...+.++|+.+|+|.+|++.-++. +++.+.+...+++.-.++|.+++ .+.++++. ......|+.. +
T Consensus 59 ~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~G~~aGa 129 (552)
T PRK03818 59 LHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGI---------PLPVMLGIFSGA 129 (552)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHhhcc
Confidence 346889999999999999999876 45556666666666666677666 55444432 2334555444 5
Q ss_pred hccHHHHHHHHHh
Q 038780 78 LTSFPVVACFLMH 90 (694)
Q Consensus 78 ~Ts~~vv~~iL~e 90 (694)
.|++|.+....+.
T Consensus 130 ~T~tp~l~aa~~~ 142 (552)
T PRK03818 130 VTNTPALGAGQQI 142 (552)
T ss_pred ccccHHHHHHHHH
Confidence 6888887765543
No 111
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=79.80 E-value=10 Score=36.79 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=32.8
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEee
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTL 566 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~ 566 (694)
+|++.+.||.|..-++..+.+.++..+.+++++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4889999999999999999999888888899999754
No 112
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=79.55 E-value=16 Score=34.42 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHhhccChHHH---Hhcc-hhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHH-
Q 038780 3 LYSLTIFGYIFFMFLIGVKMDLSLI---TKLG-KREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATT- 76 (694)
Q Consensus 3 l~~la~~G~i~llF~~Gle~d~~~l---~~~~-~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~l- 76 (694)
...+.++|+.+|++.+|++--++.+ ++.+ .....++..-.++|.+++ ++..++.+ .......|++.
T Consensus 52 ~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~--------~~~~~~~G~~aG 123 (154)
T TIGR01625 52 NLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLR--------INYALTAGMLAG 123 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHhc
Confidence 4578899999999999999887754 3433 123334444444555555 44433222 22345555544
Q ss_pred hhccHHHHHHHHHhc
Q 038780 77 MLTSFPVVACFLMHL 91 (694)
Q Consensus 77 s~Ts~~vv~~iL~el 91 (694)
+.|++|.+....+..
T Consensus 124 a~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 124 ATTNTPALDAANDTL 138 (154)
T ss_pred cccChHHHHHHHHHh
Confidence 678889887766544
No 113
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=77.98 E-value=3.2 Score=44.59 Aligned_cols=115 Identities=14% Similarity=-0.015 Sum_probs=64.9
Q ss_pred hhhhhhhHHHhhhcccccccccccCCchh-HHHH-HHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhh-hhhh
Q 038780 224 VTGLFLPLMATFCGLKSNLRDLSKGLSYP-LVFG-MTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVE-LGTF 300 (694)
Q Consensus 224 ~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~-~~~i-i~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~-li~~ 300 (694)
..+.|+-+||+.+|+.-++..+....... .... ........-......+.+.+.++.-++..|.+--.-|+=. .+.+
T Consensus 67 l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~ 146 (404)
T COG0786 67 LQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWG 146 (404)
T ss_pred cccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHH
Confidence 35788999999999999999887653222 1111 1122223444444456777887776666644333334322 3333
Q ss_pred ccccccCCCChhh--HHHHHHHHHHHHHHHHHHHHhhccc
Q 038780 301 GTNFNKQVRNTGE--FTVAVVLILILASIIPIIVRKLHDF 338 (694)
Q Consensus 301 ~~~~~~~~i~~~~--f~~lv~~~lltt~i~~~l~~~l~~p 338 (694)
....+.|.-+... .+....-.+.-.+++.|+.+|+.++
T Consensus 147 ~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k 186 (404)
T COG0786 147 PTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKK 186 (404)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHh
Confidence 4444555444222 2222223444556789999999854
No 114
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=77.04 E-value=8 Score=40.79 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=31.2
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecC
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSK 568 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~ 568 (694)
++++.|.||+|+--.|.++.+.-...+..+.++++.+..
T Consensus 29 ~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~ 67 (301)
T PRK05253 29 NPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGW 67 (301)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCC
Confidence 588999999999999999988655445677888876553
No 115
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=77.01 E-value=33 Score=36.73 Aligned_cols=153 Identities=12% Similarity=0.164 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHhchh--hhHH-HHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCC-
Q 038780 174 TIFIVCLVIVVAVVGETVGIQ--YFYG-PFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGL- 249 (694)
Q Consensus 174 ~~~il~~~l~~~~~ae~~g~~--~~lG-af~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~- 249 (694)
....+.+.+..+++.+.+|+. .++| +.++|.+..-.. ..-.+-..+...+ .-+--..+|.++..+.+....
T Consensus 11 w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~-~~l~~P~~l~~~~----q~ilG~~ig~~~t~s~l~~l~~ 85 (352)
T COG3180 11 WFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRG-LTLPLPRGLFKAG----QVILGIMIGASLTPSVLDTLKS 85 (352)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcc-ccccCChHHHHHH----HHHHHHHHhhhcCHHHHHHHHH
Confidence 455555666778888888875 4678 666666554321 1111112222222 112334567777766664322
Q ss_pred chh-HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHH-HHHHHHH
Q 038780 250 SYP-LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVL-ILILASI 327 (694)
Q Consensus 250 ~~~-~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~-~lltt~i 327 (694)
.|. ...+++..+..-++..|+..|+.+.|..+++ +..++-|..++.... .|.|- |...-+.+=.. +++.+..
T Consensus 86 ~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~---~gs~PGgas~m~~iA--~d~gA-d~~~VAl~Q~lRvl~Vvl~ 159 (352)
T COG3180 86 NWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAF---LGSSPGGASAMVSIA--QDYGA-DLRLVALMQYLRVLFVVLL 159 (352)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh---HhcCCchHHHHHHHH--HHhCC-ChhHHHHHHHHHHHHHHHH
Confidence 366 6666677777888889999999888887777 567788887777655 33332 11111111111 2333344
Q ss_pred HHHHHHhhcc
Q 038780 328 IPIIVRKLHD 337 (694)
Q Consensus 328 ~~~l~~~l~~ 337 (694)
.|.+.++.+.
T Consensus 160 vplv~~~~~~ 169 (352)
T COG3180 160 APLVSRLFVG 169 (352)
T ss_pred HHHHHHHhcC
Confidence 5666777773
No 116
>PRK12342 hypothetical protein; Provisional
Probab=76.58 E-value=8.2 Score=39.65 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=56.3
Q ss_pred EeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHH-HHHHhhhcccccCCCcEEEEEEEecCchH
Q 038780 533 VLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDE-FLNGLKKNDEILGNLNIIYKEEAVKDGSD 611 (694)
Q Consensus 533 ~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~-~i~~~~~~~~~~~~~~v~y~e~~v~~g~~ 611 (694)
+.+.=+|.|+.|++.|.|+. ..+.++|++.+-++.. ++. .+++.-..-. ..-+...+... .|.|
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a----------~~~~l~r~alamGa---D~avli~d~~~-~g~D 93 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL----------QNSKVRKDVLSRGP---HSLYLVQDAQL-EHAL 93 (254)
T ss_pred CCccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH----------hHHHHHHHHHHcCC---CEEEEEecCcc-CCCC
Confidence 34455789999999999999 4689999999866421 112 3343332211 22233333222 2344
Q ss_pred HHH-------HHHhhhcCCcEEEEcccCCCC-----CccccCCCCC
Q 038780 612 TAM-------IIRSMEEKYDLVLVGRRRRSD-----SPFTLGLSEW 645 (694)
Q Consensus 612 ~~~-------~i~~~~~~~DLiiVG~~~~~~-----s~~~~gl~~w 645 (694)
+.. .++. .+||||+.|+..... .|+++.+.+|
T Consensus 94 ~~ata~~La~~i~~--~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~ 137 (254)
T PRK12342 94 PLDTAKALAAAIEK--IGFDLLLFGEGSGDLYAQQVGLLLGELLQL 137 (254)
T ss_pred HHHHHHHHHHHHHH--hCCCEEEEcCCcccCCCCCHHHHHHHHhCC
Confidence 432 3343 359999999886433 4555555666
No 117
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=76.12 E-value=2.3 Score=43.47 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=78.4
Q ss_pred hhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccc
Q 038780 224 VTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTN 303 (694)
Q Consensus 224 ~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~ 303 (694)
.++++=++-|..+|..+|++.+..++.- +++-..+-++ +..+++.+...|+..+|+-.+|.+=..-|-.++.+.+
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanPkt--llLGaAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~-- 156 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANPKT--LLLGAAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTN-- 156 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCcHH--HHhhhHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecc--
Confidence 4678888889999999999887655321 1111122222 2344556677889999999999988888877766554
Q ss_pred cccCCCChhhHHHHHHH----HHHHHHHHHHHHHhhccccCC-CCCcccccccCCCCCCCceEEEEe
Q 038780 304 FNKQVRNTGEFTVAVVL----ILILASIIPIIVRKLHDFSNT-YPGYQQRNILHGASNDDLRILVCT 365 (694)
Q Consensus 304 ~~~~~i~~~~f~~lv~~----~lltt~i~~~l~~~l~~p~~~-~~~~~~r~i~~~~~~~~lrILv~v 365 (694)
.+.++..+...+. .-+.-++-||+.|.+-.+++| .+-.|-|++ ....||+.|+
T Consensus 157 ----~LAP~Ll~~iAvAAYSYMALVPiIQPpimkaLTt~~ERkIrM~qlR~V-----sk~EkIlFPi 214 (375)
T COG1883 157 ----KLAPELLGAIAVAAYSYMALVPIIQPPIMKALTTKEERKIRMTQLRTV-----SKREKILFPI 214 (375)
T ss_pred ----ccCHHHHHHHHHHHHHHHHHhhhcccHHHHHhcCHHHHHhhhhccccc-----cchhhhhhhH
Confidence 2334433333221 223355689999988765433 322333332 3346888876
No 118
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=75.67 E-value=7.2 Score=40.44 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCC-CCc--hhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCc
Q 038780 174 TIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTG-PPL--ASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLS 250 (694)
Q Consensus 174 ~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~-~p~--~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~ 250 (694)
...-+.++|+.+.+++.+.++|..|-.++|.+.... |.+ ...+...+-.++ .. +....+|+++.+.++.....
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG--Vi--LLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG--VI--LLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh--HH--HHHHhcchheeHHHHhhHHH
Confidence 344566788889999999999999999999998643 322 245666666664 22 33346899999888765544
Q ss_pred hh---HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhh
Q 038780 251 YP---LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVEL 297 (694)
Q Consensus 251 ~~---~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l 297 (694)
|. ++.=+.+++ .-.+..++..|+++...+..|+.++.-..+-+
T Consensus 87 iAipgAl~qia~at----~lg~gL~~~lgws~~~glvfGlaLS~aSTVvl 132 (408)
T COG4651 87 IAIPGALAQIALAT----LLGMGLSSLLGWSFGTGIVFGLALSVASTVVL 132 (408)
T ss_pred HhcchHHHHHHHHH----HHHhHHHHHcCCCcccceeeeehhhhHHHHHH
Confidence 43 222222222 22233456678888888888887776655433
No 119
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=75.35 E-value=22 Score=34.35 Aligned_cols=57 Identities=19% Similarity=0.368 Sum_probs=42.1
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
+|++.+.||+|.--.+.....+.+..+.+++++++...-.. +...+.++++++..+.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~-----~s~~~~~~v~~~~~~~ 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE-----ESDEEAEFVEEICEQL 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC-----CHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-----ccchhHHHHHHHHHhc
Confidence 58899999999999999999999999999999998754221 2233456777777653
No 120
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=75.08 E-value=21 Score=36.75 Aligned_cols=84 Identities=13% Similarity=0.153 Sum_probs=50.0
Q ss_pred EeccCCcchHHHHHHHHHHHhCCC-eEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEE-EEEEEecCch
Q 038780 533 VLYMGGEDDMEALAYARRMARSSR-VHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNII-YKEEAVKDGS 610 (694)
Q Consensus 533 ~~f~gg~ddreAl~~a~rma~~~~-v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~-y~e~~v~~g~ 610 (694)
+.+.=.|.|+-|++.|.|+.++.+ .++|++.+-++.. + +++.+++.-.. +.++.. ..+... .|.
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a------~---~~~~lr~aLAm----GaD~avli~d~~~-~g~ 95 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL------T---NAKGRKDVLSR----GPDELIVVIDDQF-EQA 95 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch------h---hHHHHHHHHHc----CCCEEEEEecCcc-cCc
Confidence 344456889999999999999764 8999999866521 1 12345544332 122222 222211 233
Q ss_pred HHHH-------HHHhhhcCCcEEEEcccC
Q 038780 611 DTAM-------IIRSMEEKYDLVLVGRRR 632 (694)
Q Consensus 611 ~~~~-------~i~~~~~~~DLiiVG~~~ 632 (694)
|+.. .+++ .+||||+.|+..
T Consensus 96 D~~~tA~~La~ai~~--~~~DLVl~G~~s 122 (256)
T PRK03359 96 LPQQTASALAAAAQK--AGFDLILCGDGS 122 (256)
T ss_pred CHHHHHHHHHHHHHH--hCCCEEEEcCcc
Confidence 3333 3343 369999999876
No 121
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=72.69 E-value=15 Score=40.10 Aligned_cols=132 Identities=16% Similarity=0.126 Sum_probs=66.2
Q ss_pred HHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhccc-ccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 038780 198 GPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLK-SNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFN 276 (694)
Q Consensus 198 Gaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~-~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 276 (694)
....+|....+..-+.++-.+.+..++..+++|.+....=.+ .+...+.. .|...+...+..+.-++.+++..++++
T Consensus 11 ~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (385)
T PF03547_consen 11 LIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLS--LWFIPVFAFIIFILGLLLGFLLSRLFR 88 (385)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445555544445667778888999999999996544333 33333322 233333333334444566667777777
Q ss_pred CChhHHHH--HHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q 038780 277 THSTDAAA--LSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIPIIVRKLH 336 (694)
Q Consensus 277 ~~~~~~~~--lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~~l~~~l~ 336 (694)
.+.++.-. ++...+.-|.+.+-+...-+ +++.....++..++..++.-++...+.
T Consensus 89 ~~~~~~~~~~~~~~~~N~~~lglpi~~~l~-----g~~~~~~~~~~~~~~~i~~~~~~~~l~ 145 (385)
T PF03547_consen 89 LPKEWRGVFVLAASFGNTGFLGLPILQALF-----GERGVAYAIIFDVVNNIILWSLGYFLL 145 (385)
T ss_pred CCcccceEEEecccCCcchhhHHHHHHHHh-----cchhhhhehHHHHhhHHHHHHHHHHhh
Confidence 76654332 22223344444444443222 223333333444444444434444444
No 122
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=71.67 E-value=11 Score=39.59 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=37.3
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKN 590 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~ 590 (694)
+.++.|.||+|+--.|.++.+.-...+..+.++++.+.-.+. + ..++.+++..+
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~------E-t~efrd~~a~~ 74 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFR------E-MIAFRDHMVAK 74 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCH------H-HHHHHHHHHHH
Confidence 346789999999999999988865445778888886543321 1 33566666554
No 123
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=71.40 E-value=19 Score=37.92 Aligned_cols=129 Identities=19% Similarity=0.141 Sum_probs=76.3
Q ss_pred hhhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCC------ChhHHHHHHHHhhhhhhhh
Q 038780 223 IVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNT------HSTDAAALSLILTVKGIVE 296 (694)
Q Consensus 223 ~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~------~~~~~~~lg~~m~~kG~~~ 296 (694)
+.+++|=|+-|..+|..+|++.+...+ + ..++-..+-+| +..+++.+...|+ +.+|+-.+|.+=..-|-..
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpllanP-~-~~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~ 136 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLLANP-R-TLLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTA 136 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHHhCh-H-HHHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCchh
Confidence 457888899999999999998876653 2 12222222222 2344455666677 6699999998888888887
Q ss_pred hhhhccccccCCCChhhHHHHHHH----HHHHHHHHHHHHHhhcccc-CCCCCcccccccCCCCCCCceEEEEe
Q 038780 297 LGTFGTNFNKQVRNTGEFTVAVVL----ILILASIIPIIVRKLHDFS-NTYPGYQQRNILHGASNDDLRILVCT 365 (694)
Q Consensus 297 li~~~~~~~~~~i~~~~f~~lv~~----~lltt~i~~~l~~~l~~p~-~~~~~~~~r~i~~~~~~~~lrILv~v 365 (694)
+.+.+.- .++.+..+.+. .-+.=.+-||++|.+-.++ |+.+-++.|.+ ....||+.|+
T Consensus 137 If~s~~l------ap~Llg~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~V-----sk~eKi~Fpi 199 (354)
T TIGR01109 137 IYLSGKL------APELLAAIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLRTV-----SKREKILFPI 199 (354)
T ss_pred hhhHhhh------hhHHHHHHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCCCc-----CccchhHHHH
Confidence 7766532 23333322221 2233455789999887433 33333333322 2345666654
No 124
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=71.07 E-value=26 Score=33.67 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=40.0
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKN 590 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~ 590 (694)
+|++.+.||.|+.-++.++.+...+.+.+++++++.+.... ....+.+.++++..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~-----~~~~~~~~~~~~~~~ 56 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRP-----ESDEEAAFVADLCAK 56 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCc-----hHHHHHHHHHHHHHH
Confidence 47899999999999999999988776788899987543211 111234566666554
No 125
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=68.55 E-value=25 Score=35.21 Aligned_cols=86 Identities=14% Similarity=0.151 Sum_probs=62.0
Q ss_pred EEEEEEEcCCC-CchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCCCCCCCc
Q 038780 443 VQVFSAISPPK-VMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIHGPSS 521 (694)
Q Consensus 443 v~~~t~vs~~~-~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~~~~~ 521 (694)
..++|-++|.+ ...++|.+.+.+-++|.|++| |+..-+.....++.+++-++.+-||-++..... +.
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIG--------GS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~--~i-- 83 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIG--------GSDGVTEENVDNVVEAIKERTDLPVILFPGSPS--GI-- 83 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEEC--------CcccccHHHHHHHHHHHHhhcCCCEEEecCChh--cc--
Confidence 46888999999 999999999999999999999 332223345677888888899999877755432 11
Q ss_pred cccCCceeEEEEeccCCcchHH
Q 038780 522 IFVAPFVYRLAVLYMGGEDDME 543 (694)
Q Consensus 522 ~~~~~~~~~I~~~f~gg~ddre 543 (694)
+.....+.++..=..+|..
T Consensus 84 ---s~~aDavff~svLNS~n~~ 102 (240)
T COG1646 84 ---SPYADAVFFPSVLNSDNPY 102 (240)
T ss_pred ---CccCCeEEEEEEecCCCcc
Confidence 1124567777766666644
No 126
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=68.32 E-value=25 Score=37.48 Aligned_cols=133 Identities=16% Similarity=0.205 Sum_probs=77.0
Q ss_pred hHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchh--HHHHHHHHHHHHHHHHHHHHH
Q 038780 196 FYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYP--LVFGMTIGLFFKLIAVYLPAV 273 (694)
Q Consensus 196 ~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~--~~~ii~~~~~~K~~~~~l~~~ 273 (694)
.+||.+++.+.....+..-....++..++ ..+--+.+|.+++...+.....|. ..++.+...+.-.+..++..|
T Consensus 2 llG~~ia~~~~~~~~~~~~~~p~~~r~~~----q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r 77 (318)
T PF05145_consen 2 LLGPMIAVIIAALFGPLPLRVPRRLRNAG----QAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRR 77 (318)
T ss_pred chHHHHHHHHHHHhCCCccCCCHHHHHHH----HHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666543323333333333332 334456679999887765543333 555566666678888888899
Q ss_pred hhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHH-HHHHHHHHHHHHHhhccc
Q 038780 274 WFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVL-ILILASIIPIIVRKLHDF 338 (694)
Q Consensus 274 ~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~-~lltt~i~~~l~~~l~~p 338 (694)
+.+++..+++ +...+-|..+++... .+.|- |...-+.+=.. +++...+.|+++.+..+.
T Consensus 78 ~~~~d~~TA~---~~~~PGg~s~m~~la--~~~ga-d~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~ 137 (318)
T PF05145_consen 78 ISGLDRATAF---FASMPGGLSEMVALA--EEYGA-DTRRVALVQSLRLLLVVLLVPFIASLLGGG 137 (318)
T ss_pred HcCCChhHHH---HHcCCccHHHHHHHH--HHcCC-ChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999988887 456788888877665 33332 22221111111 222234467777777643
No 127
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=67.84 E-value=27 Score=40.39 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhccChHH---HHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHH-hh
Q 038780 4 YSLTIFGYIFFMFLIGVKMDLSL---ITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATT-ML 78 (694)
Q Consensus 4 ~~la~~G~i~llF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~l-s~ 78 (694)
..+.++|+.+|++.+|++--++. +++.+.+...+|++-.++|.+++ .+++++.+ ......+|++. +.
T Consensus 447 ~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~G~~aG~~ 518 (562)
T TIGR03802 447 WLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLK--------YDPALLLGALAGAR 518 (562)
T ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHhhccC
Confidence 46889999999999999888765 56666677777777777787777 66643322 23345555543 67
Q ss_pred ccHHHHHHHHHhc
Q 038780 79 TSFPVVACFLMHL 91 (694)
Q Consensus 79 Ts~~vv~~iL~el 91 (694)
|++|.+.......
T Consensus 519 t~t~~l~~a~~~~ 531 (562)
T TIGR03802 519 TATPALGAVLERA 531 (562)
T ss_pred CCcHHHHHHHHhc
Confidence 8899887765443
No 128
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=66.45 E-value=40 Score=37.04 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=47.5
Q ss_pred hhhhHHHhhhcccccccccccCCchh-HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhh
Q 038780 227 LFLPLMATFCGLKSNLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVEL 297 (694)
Q Consensus 227 ~f~PlFF~~~Gl~~dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l 297 (694)
+-+.+...-.|++++++.+... .|. +.+..+..++.-.+....+.+.++.+|.|++.+|.+....-..++
T Consensus 66 lALaiILfdgG~~T~lss~r~a-~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAV 136 (574)
T COG3263 66 LALAIILFDGGFGTQLSSFRVA-AGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAV 136 (574)
T ss_pred HHHHHHhhcCccCCcHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHH
Confidence 3344444456999988877654 344 444455555566677777888999999999999988876544433
No 129
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=66.11 E-value=1.1e+02 Score=30.70 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 038780 253 LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIPIIV 332 (694)
Q Consensus 253 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~~l~ 332 (694)
.+.-+.++.+.-+..+++.++.+|.+..- ...+.+|....=+...+..+.|-..+-+-..+++.-++-..++|++.
T Consensus 80 il~~~~~g~~~~~~~~~~l~~~lgl~~~~----~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~ll 155 (215)
T PF04172_consen 80 ILVGVLVGSLVSIFSAVLLARLLGLSPEI----ILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLL 155 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHH
Confidence 45555556666777888888998887643 34578898888888888777776654444444444555555667777
Q ss_pred Hhh
Q 038780 333 RKL 335 (694)
Q Consensus 333 ~~l 335 (694)
+++
T Consensus 156 k~~ 158 (215)
T PF04172_consen 156 KLL 158 (215)
T ss_pred hHc
Confidence 764
No 130
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=65.59 E-value=13 Score=39.32 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=32.1
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKES 570 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~ 570 (694)
++++.|.||+|+--.|.++.+.....+..+.++++.+..++
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~F 79 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKF 79 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCC
Confidence 46789999999999999999887555567788887655443
No 131
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=65.35 E-value=60 Score=34.24 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHH
Q 038780 9 FGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTI 55 (694)
Q Consensus 9 ~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l 55 (694)
+++.++.|..|..+|++.+.+.|.+.+.+++..+++.+..+ .+..++
T Consensus 196 f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rll 243 (312)
T PRK12460 196 LLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLV 243 (312)
T ss_pred EeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778888899999999999998888888888777777777 655555
No 132
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=63.68 E-value=29 Score=40.16 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHH
Q 038780 4 YSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFN 44 (694)
Q Consensus 4 ~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~ 44 (694)
+.+.++|+++|+|.+|++.-++-++.-.|+.+...+.++++
T Consensus 57 ~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~ 97 (562)
T TIGR03802 57 PGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVF 97 (562)
T ss_pred hHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH
Confidence 45778999999999999999987654444444444444433
No 133
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=62.69 E-value=1.1e+02 Score=32.43 Aligned_cols=113 Identities=14% Similarity=-0.007 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhc
Q 038780 1 ENLYSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLT 79 (694)
Q Consensus 1 ~~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~T 79 (694)
+.++.+++...-+-||..|+.++.+.+++..|..+.....-.++--+++ .+...++. .....-....++..
T Consensus 207 ~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l--------~~~~~~~~vl~aa~ 278 (321)
T TIGR00946 207 KSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGL--------RGLELSVAILQAAL 278 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHHhCC--------ChHHHHHHHHHHcC
Q ss_pred cHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 80 SFPVVACFLMHLKIINSELGHFALSTALLCDLQSVILVNSYN 121 (694)
Q Consensus 80 s~~vv~~iL~el~~~~s~~g~lals~a~i~Di~~~ill~~~~ 121 (694)
..++...++.+.--.+.+....++..+.+--++.+.+...+.
T Consensus 279 P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 279 PGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred ChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
No 134
>COG2985 Predicted permease [General function prediction only]
Probab=62.24 E-value=20 Score=39.76 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhccChHH---HHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHH-hhccHH
Q 038780 8 IFGYIFFMFLIGVKMDLSL---ITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATT-MLTSFP 82 (694)
Q Consensus 8 ~~G~i~llF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~l-s~Ts~~ 82 (694)
++|+++|.+.+|+|--+.. +++.+++-..++++- ++.+ ..+|.++.+.+ +...+..|+.- +.||+|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~-----~~~~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFG-----IDLGLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcC-----CCHHHhhhhhcccccCCc
Confidence 7999999999999998875 677888777666553 3344 55566655542 33334444333 356666
Q ss_pred HHH---HHHHhcccc
Q 038780 83 VVA---CFLMHLKII 94 (694)
Q Consensus 83 vv~---~iL~el~~~ 94 (694)
... .+|+|++..
T Consensus 133 ~L~aa~~~L~~lg~~ 147 (544)
T COG2985 133 GLGAAQDILRELGAP 147 (544)
T ss_pred hhHHHHHHHHhhccc
Confidence 554 456666653
No 135
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=60.72 E-value=67 Score=30.64 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=31.7
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCC--CeEEEEEEEeec
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSS--RVHLTVIHFTLS 567 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~--~v~ltv~~~~~~ 567 (694)
||++.+.||.|.--.+.++.+..++. +.+++.+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 48899999999999999998887655 778888887643
No 136
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=60.72 E-value=32 Score=32.47 Aligned_cols=81 Identities=25% Similarity=0.231 Sum_probs=47.0
Q ss_pred cchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEE-EEec--CchHHHHH
Q 038780 539 EDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKE-EAVK--DGSDTAMI 615 (694)
Q Consensus 539 ~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e-~~v~--~g~~~~~~ 615 (694)
+.|+|+++.|+++++..+.+++++-+-+.. + ..+.+++.-.++ +.+++...+ .... +.+.....
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~---------~-~~~~l~~~l~~~---G~d~v~~~~~~~~~~~~~~~~a~~ 81 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAE---------E-AAEALRKALAKY---GADKVYHIDDPALAEYDPEAYADA 81 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCC---------C-HHHHHHHHHHST---TESEEEEEE-GGGTTC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecch---------h-hHHHHhhhhhhc---CCcEEEEecCccccccCHHHHHHH
Confidence 779999999999999999999999875211 1 223333333322 123343322 1111 22334444
Q ss_pred HHhhh--cCCcEEEEcccC
Q 038780 616 IRSME--EKYDLVLVGRRR 632 (694)
Q Consensus 616 i~~~~--~~~DLiiVG~~~ 632 (694)
+.+.. .++|+|++|...
T Consensus 82 l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 82 LAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp HHHHHHHHT-SEEEEESSH
T ss_pred HHHHHHhcCCCEEEEcCcC
Confidence 44443 569999999765
No 137
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=59.35 E-value=21 Score=33.74 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=52.0
Q ss_pred hhHHHHhhhhcccCCC---CchhHHHHHHhhhhhhhhhhHHHhhhccccccc---ccccCCchh-HHHHHHHHHHHHHHH
Q 038780 195 YFYGPFIFGLTVPTGP---PLASTLVEKLDTIVTGLFLPLMATFCGLKSNLR---DLSKGLSYP-LVFGMTIGLFFKLIA 267 (694)
Q Consensus 195 ~~lGaf~~GL~i~~~~---p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~---~l~~~~~~~-~~~ii~~~~~~K~~~ 267 (694)
..-|+++.||++.... |..-.+.+....+..++.+-+|...+|++.-.. .+.....+. ..+..++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3457788888776643 233334344555566777889999999998643 333332122 223333444445666
Q ss_pred HHHHHHhhCCChhH
Q 038780 268 VYLPAVWFNTHSTD 281 (694)
Q Consensus 268 ~~l~~~~~~~~~~~ 281 (694)
.++..+++|+++-.
T Consensus 103 ~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 103 AVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHhCCCHHH
Confidence 77777888998753
No 138
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=56.93 E-value=80 Score=32.92 Aligned_cols=56 Identities=18% Similarity=0.379 Sum_probs=42.3
Q ss_pred eEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
++|++.+.||+|.--+|..+.++.++ .++.+++|...-.. +.+...+..+++....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~-----~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG-----YSDQEAELVEKLCEKL 77 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC-----ccchHHHHHHHHHHHh
Confidence 58999999999999999999999988 89999998654211 1133456666766543
No 139
>PRK04972 putative transporter; Provisional
Probab=56.24 E-value=73 Score=36.81 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhhccChHH---HHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHH-hh
Q 038780 4 YSLTIFGYIFFMFLIGVKMDLSL---ITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATT-ML 78 (694)
Q Consensus 4 ~~la~~G~i~llF~~Gle~d~~~---l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~l-s~ 78 (694)
..+.++|+.+|+|.+|++.-++- +++.+.+...+++.-.+++.+++ .+.++++. ......|+.. +.
T Consensus 59 ~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~G~~aGa~ 129 (558)
T PRK04972 59 TDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGW---------DIGLTAGMLAGSM 129 (558)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHhhccc
Confidence 34678999999999999998876 45556666666666666666666 55544432 2234444444 56
Q ss_pred ccHHHHHHHHH
Q 038780 79 TSFPVVACFLM 89 (694)
Q Consensus 79 Ts~~vv~~iL~ 89 (694)
|++|.+.....
T Consensus 130 T~tp~l~~a~~ 140 (558)
T PRK04972 130 TSTPVLVGAGD 140 (558)
T ss_pred cCcHHHHHHHH
Confidence 88888766544
No 140
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=54.38 E-value=25 Score=39.48 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=39.8
Q ss_pred hHHHHHHHHhcCccEEEec---CccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCC
Q 038780 456 HEDICWLAFDKSISLIILP---CHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSR 515 (694)
Q Consensus 456 ~~~I~~~A~e~~~~lIilp---~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~ 515 (694)
+++||.+|+|+++|+|++| ||-...... .-...++.+-+.-+..-||..=++-|.+.
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~---~L~~~i~lLRryClgdkP~~le~lSD~s~ 100 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRK---TLHRCLELLRRYCLGDKPVQLEILSDQSV 100 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHH---HHHHHHHHHHHHccCCCceeeEEecccce
Confidence 5799999999999999999 444322111 11234555556667778999888888765
No 141
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=52.99 E-value=88 Score=34.95 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=42.5
Q ss_pred eEEEEeccCCcchHHHHHHHHHHH-hCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMA-RSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma-~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
.+|++.+.||+|.--.+.+..++. ..++.++++++++..-.. +.+.+.++.+++..+.
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~-----~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP-----NADSWVKHCEQVCQQW 74 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc-----chHHHHHHHHHHHHHc
Confidence 579999999999998888888776 456889999998754211 1223457788887654
No 142
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=49.94 E-value=52 Score=33.91 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=59.6
Q ss_pred eccCCcchHHHHHHHHHHHh-CCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEE-EEEEEecCchH
Q 038780 534 LYMGGEDDMEALAYARRMAR-SSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNII-YKEEAVKDGSD 611 (694)
Q Consensus 534 ~f~gg~ddreAl~~a~rma~-~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~-y~e~~v~~g~~ 611 (694)
++.=.|.|+-|++.|.|+.+ ..+.+++++.+-++. .++.+++.-.. +.++.. ..+.. ..+.|
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~-----------a~~~lr~aLAm----GaDraili~d~~-~~~~d 95 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ-----------AEEALREALAM----GADRAILITDRA-FAGAD 95 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCCceEEEEEecchh-----------hHHHHHHHHhc----CCCeEEEEeccc-ccCcc
Confidence 33445889999999999999 799999999986552 12344442221 222332 22222 22334
Q ss_pred HHH---HHHhh--hcCCcEEEEcccCC-CCCccc-cCCCCCCCCCccchhhhh
Q 038780 612 TAM---IIRSM--EEKYDLVLVGRRRR-SDSPFT-LGLSEWCDLPELGPIGDL 657 (694)
Q Consensus 612 ~~~---~i~~~--~~~~DLiiVG~~~~-~~s~~~-~gl~~w~e~~eLG~igd~ 657 (694)
... .+.+. ..++|||+.|...- ..+.++ ..+.+|--.|....+-++
T Consensus 96 ~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i 148 (260)
T COG2086 96 PLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKI 148 (260)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEE
Confidence 433 33332 25688999997753 222222 223344333555555444
No 143
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=49.57 E-value=1e+02 Score=28.67 Aligned_cols=39 Identities=8% Similarity=0.064 Sum_probs=19.8
Q ss_pred hhHHHh--hhcccccccccccCCchhHHHHHHHHHHHHHHHH
Q 038780 229 LPLMAT--FCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAV 268 (694)
Q Consensus 229 ~PlFF~--~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~ 268 (694)
+|+||+ .+|.-..++.+... .|..++.+++.++.=++.+
T Consensus 69 m~LfFVPagVGim~~~~ll~~~-~~~Il~~ivvSTllvl~vt 109 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMSQY-PVQIIGVIIVATILLLACT 109 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 578885 55665556666554 3443444444433333333
No 144
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=49.00 E-value=77 Score=29.44 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=26.4
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEee
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTL 566 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~ 566 (694)
+|++.|.||+|+--.+.++.+...+. -+++++++.+
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCC
Confidence 47899999999988888887765432 4566777644
No 145
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=47.35 E-value=23 Score=29.26 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=27.7
Q ss_pred EEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEe
Q 038780 531 LAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFT 565 (694)
Q Consensus 531 I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~ 565 (694)
|++++.||+|+..++.++.+.+ ..+.+++.+++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 4688999999999999999987 446677777753
No 146
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=47.32 E-value=1.8e+02 Score=30.88 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHC------CCCCCCCch-HHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCC---Cch
Q 038780 144 LIVFVTIVLRRLMFWIIRRT------PEGKPVKSS-YTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGP---PLA 213 (694)
Q Consensus 144 ~~~~~~~v~r~~~~~~~~~~------~~~~~~~e~-~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~---p~~ 213 (694)
|..++..+-+|+++++..+. +..++++.. -+.+-+..+.+++.+. =.-.+.+|.+++|-.+.+.. ++.
T Consensus 158 YMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrEsGv~~rl~ 235 (354)
T TIGR01109 158 YMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLI--PKALPLVGMLMFGNLMRESGVVERLS 235 (354)
T ss_pred HHHHHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhccHHHHH
Confidence 45566667778888775331 112233322 2444444455555442 23358899999999998863 333
Q ss_pred hHHHHHHhhhhhhhhhhHHHhhhcccccccccccC
Q 038780 214 STLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKG 248 (694)
Q Consensus 214 ~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~ 248 (694)
+...+.+-..+ .-+.-..+|...+-..+.+.
T Consensus 236 ~taqn~l~niv----TifLGl~vG~~~~A~~fL~~ 266 (354)
T TIGR01109 236 KTASNELLNIV----TILLGLSVGAKMRADKFLTP 266 (354)
T ss_pred HHHHHHHHHHH----HHHHHHHhhhhccHHhhCCh
Confidence 44444444333 22233567777776666543
No 147
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=46.85 E-value=4.4e+02 Score=30.52 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=44.9
Q ss_pred hhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHh---------hCCChhHHHHHHHHhhhhhhhh
Q 038780 226 GLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVW---------FNTHSTDAAALSLILTVKGIVE 296 (694)
Q Consensus 226 ~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~---------~~~~~~~~~~lg~~m~~kG~~~ 296 (694)
.+++|.-..-.|+.++...+.... +.++.+.+++++.-.+.+....++ .++++.+++.+|.++++-.-+.
T Consensus 70 ~~~LPpIlFe~g~~l~~~~f~~n~-~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVA 148 (559)
T TIGR00840 70 LYLLPPIVLDAGYFMPQRNFFENL-GSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVA 148 (559)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHH
Confidence 467777777899999998887652 112222222222222222111111 2569999999999999887776
Q ss_pred hhhh
Q 038780 297 LGTF 300 (694)
Q Consensus 297 li~~ 300 (694)
....
T Consensus 149 Vlai 152 (559)
T TIGR00840 149 VLAV 152 (559)
T ss_pred HHHH
Confidence 6543
No 148
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=46.00 E-value=1.1e+02 Score=33.32 Aligned_cols=97 Identities=16% Similarity=0.247 Sum_probs=58.8
Q ss_pred HhhhhhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCC-hhHHHHHHHHhh---hhhhh
Q 038780 220 LDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTH-STDAAALSLILT---VKGIV 295 (694)
Q Consensus 220 l~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~-~~~~~~lg~~m~---~kG~~ 295 (694)
+.+.++..++|+-....=++.|++.+... ..-.+...+++.++=++++.+..+.++.. -.|...+...+. .-|..
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~-g~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~ 130 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRL-GGRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSV 130 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchh
Confidence 34445566777777777778899887643 22255566666777777777777766644 334444443333 34666
Q ss_pred hhhhhccccccCCCChhhHHHHHHH
Q 038780 296 ELGTFGTNFNKQVRNTGEFTVAVVL 320 (694)
Q Consensus 296 ~li~~~~~~~~~~i~~~~f~~lv~~ 320 (694)
-.+...-+++. +++.|+..+.+
T Consensus 131 N~~Av~~al~~---~~~~~~a~~aa 152 (378)
T PF05684_consen 131 NFVAVAEALGV---SDSLFAAALAA 152 (378)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHH
Confidence 66665555432 56777766655
No 149
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=45.61 E-value=1.9e+02 Score=31.22 Aligned_cols=99 Identities=20% Similarity=0.242 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHC------CCCCCCCch-HHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCC---Cch
Q 038780 144 LIVFVTIVLRRLMFWIIRRT------PEGKPVKSS-YTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGP---PLA 213 (694)
Q Consensus 144 ~~~~~~~v~r~~~~~~~~~~------~~~~~~~e~-~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~---p~~ 213 (694)
|..++..+-+|+++++..+. ...++++.. -+.+-+..+++++++. =.-.+.+|.|++|-.+.+.. ++.
T Consensus 229 YMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEsGVv~rLs 306 (433)
T PRK15475 229 YMALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRESGVVERLS 306 (433)
T ss_pred HHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhccHHHHH
Confidence 45566677788888875331 112233322 2444444455555442 23358899999999998863 334
Q ss_pred hHHHHHHhhhhhhhhhhHHHhhhcccccccccccC
Q 038780 214 STLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKG 248 (694)
Q Consensus 214 ~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~ 248 (694)
+...+.+-.++ .-+.-..+|.+.+-..+.+.
T Consensus 307 ~taqn~L~niv----TIfLGl~VGa~~~A~~FL~~ 337 (433)
T PRK15475 307 DTVQNGLINIV----TIFLGLSVGAKLVADKFLQP 337 (433)
T ss_pred HHHHHHHHHHH----HHHHHHHhhhhccHHhhCCh
Confidence 44444444433 22233567777776655544
No 150
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=44.39 E-value=29 Score=36.71 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=33.1
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCe-EEEEEEE
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRV-HLTVIHF 564 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v-~ltv~~~ 564 (694)
..+||+-|.||+|.---|+++.+.|+..+- +++|+++
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~Vlfi 64 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFI 64 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEE
Confidence 358999999999999999999999988775 8999886
No 151
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=43.09 E-value=43 Score=35.55 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=17.7
Q ss_pred hHHHHHHHhhh-----cCCcEEEEcccCCC
Q 038780 610 SDTAMIIRSME-----EKYDLVLVGRRRRS 634 (694)
Q Consensus 610 ~~~~~~i~~~~-----~~~DLiiVG~~~~~ 634 (694)
.++.+.|+... .+||+||++|++|.
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 44555555553 35999999999985
No 152
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=42.85 E-value=2.6e+02 Score=30.27 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHC------CCCCCCCch-HHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCC---Cch
Q 038780 144 LIVFVTIVLRRLMFWIIRRT------PEGKPVKSS-YTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGP---PLA 213 (694)
Q Consensus 144 ~~~~~~~v~r~~~~~~~~~~------~~~~~~~e~-~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~---p~~ 213 (694)
|..++..+-+|+++++..+. ...++++.. -+.+-+..+++++++. =.-.+.+|.|++|-.+.+.. ++.
T Consensus 229 YMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEsGVv~rLs 306 (433)
T PRK15476 229 YMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRESGVVERLS 306 (433)
T ss_pred HHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhccHHHHH
Confidence 45566667778888775321 112233322 2444444455555442 23358899999999998863 334
Q ss_pred hHHHHHHhhhhhhhhhhHHHhhhcccccccccccC
Q 038780 214 STLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKG 248 (694)
Q Consensus 214 ~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~ 248 (694)
+...+.+-.++ .-+.-..+|.+.+-..+.+.
T Consensus 307 ~taqn~L~niv----TIfLGl~VGa~~~A~~FL~~ 337 (433)
T PRK15476 307 DTVQNGLINIV----TIFLGLSVGAKLVADKFLQP 337 (433)
T ss_pred HHHHHHHHHHH----HHHHHHHhhhhccHHhhCCh
Confidence 44444444433 22233567777776655544
No 153
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=42.84 E-value=2.6e+02 Score=30.27 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHC------CCCCCCCch-HHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCC---Cch
Q 038780 144 LIVFVTIVLRRLMFWIIRRT------PEGKPVKSS-YTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGP---PLA 213 (694)
Q Consensus 144 ~~~~~~~v~r~~~~~~~~~~------~~~~~~~e~-~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~---p~~ 213 (694)
|..++..+-+|+++++..+. ...++++.. -+.+-+..+++++++. =.-.+.+|.|++|-.+.+.. ++.
T Consensus 229 YMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEsGVv~rLs 306 (433)
T PRK15477 229 YMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRESGVVERLS 306 (433)
T ss_pred HHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhccHHHHH
Confidence 45566667778888775321 112233322 2444444455555442 23358899999999998863 334
Q ss_pred hHHHHHHhhhhhhhhhhHHHhhhcccccccccccC
Q 038780 214 STLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKG 248 (694)
Q Consensus 214 ~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~ 248 (694)
+...+.+-.++ .-+.-..+|.+.+-..+.+.
T Consensus 307 ~taqn~L~niv----TIfLGl~VGa~~~A~~FL~~ 337 (433)
T PRK15477 307 DTVQNGLINIV----TIFLGLSVGAKLVADKFLQP 337 (433)
T ss_pred HHHHHHHHHHH----HHHHHHHhhhhccHHhhCCh
Confidence 44444444433 22233567777776655544
No 154
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=42.67 E-value=55 Score=37.30 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=38.0
Q ss_pred hhhhhHHHhhhcccccccccccCCchh-HHHHH-------HHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhh
Q 038780 226 GLFLPLMATFCGLKSNLRDLSKGLSYP-LVFGM-------TIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVEL 297 (694)
Q Consensus 226 ~~f~PlFF~~~Gl~~dl~~l~~~~~~~-~~~ii-------~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~l 297 (694)
.+++|---.-.|.+++-+.+.....-. .+.+. ++....|+.+. ....++++++|++.+|.+.++---+..
T Consensus 103 ~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPVtv 180 (575)
T KOG1965|consen 103 LVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPVTV 180 (575)
T ss_pred HHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCchHH
Confidence 445555445678888866665432111 11111 12222233322 223457899999999999986544443
No 155
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=41.88 E-value=6e+02 Score=29.91 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 138 MALSLSLIVFVTIVLRRLMFWIIRR 162 (694)
Q Consensus 138 ~~~~~~~~~~~~~v~r~~~~~~~~~ 162 (694)
+++.++...+.++++.|...|+..-
T Consensus 419 llt~li~~~l~~~viGp~~~~i~~~ 443 (631)
T PRK09765 419 VLGTLGAGSLMLFVVGEPVAWINNS 443 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555666666665543
No 156
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=40.71 E-value=47 Score=32.54 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=35.9
Q ss_pred HHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhh
Q 038780 17 LIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQTISQI 58 (694)
Q Consensus 17 ~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~ 58 (694)
-...|.|.+++||.+..-..--+.+.++||+.| .+++.+++.
T Consensus 91 aTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 91 ATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred HHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 346789999999999887776778999999999 999988764
No 157
>COG4827 Predicted transporter [General function prediction only]
Probab=39.90 E-value=3.8e+02 Score=26.48 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhhccChHHHH-h-cchhHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhhccHH
Q 038780 6 LTIFGYIFFMFLIGVKMDLSLIT-K-LGKREWCISLS-LMFNLLLVGMICQTISQILEPQEYLDDWIDLFTATTMLTSFP 82 (694)
Q Consensus 6 la~~G~i~llF~~Gle~d~~~l~-~-~~~~~~~i~~~-~~~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts~~ 82 (694)
.=..|..+.+|..|+++-+..=. . ..|++..|+-. +++++++.|+...+..... ......++.+-+.++.--..
T Consensus 10 ~~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~gla~~vs~~~~---~~ls~y~llihvllslfLIg 86 (239)
T COG4827 10 TYVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFGGLADHVSFDAF---ERLSAYGLLIHVLLSLFLIG 86 (239)
T ss_pred HHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999988776421 1 22345556544 4555555444333222110 00122344444444443333
Q ss_pred HHHHHHHhcccccChhHHH
Q 038780 83 VVACFLMHLKIINSELGHF 101 (694)
Q Consensus 83 vv~~iL~el~~~~s~~g~l 101 (694)
.-..+.++.+--+++..+.
T Consensus 87 aGI~t~rkW~~~~~D~sK~ 105 (239)
T COG4827 87 AGIYTQRKWNSGKSDVSKH 105 (239)
T ss_pred hhHHHHHHhhccCcchhhc
Confidence 3344556666555555543
No 158
>COG2431 Predicted membrane protein [Function unknown]
Probab=37.64 E-value=4.9e+02 Score=27.05 Aligned_cols=49 Identities=14% Similarity=0.005 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhc
Q 038780 253 LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFG 301 (694)
Q Consensus 253 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~ 301 (694)
....-+..+++-.+++.+.+.+.++|+.++++++..+.=-......+..
T Consensus 165 gl~l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 165 GLILAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 3445556667788999999999999999999988877655555555544
No 159
>PRK04972 putative transporter; Provisional
Probab=37.21 E-value=1.8e+02 Score=33.64 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=53.2
Q ss_pred hhhhHHHHhhhhcccCC---CCchhHHHHHHhhhhhhhhhhHHHhhhccccccc---ccccCCchhHHHH-HHHHHHHHH
Q 038780 193 IQYFYGPFIFGLTVPTG---PPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLR---DLSKGLSYPLVFG-MTIGLFFKL 265 (694)
Q Consensus 193 ~~~~lGaf~~GL~i~~~---~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~---~l~~~~~~~~~~i-i~~~~~~K~ 265 (694)
+...-|+.+.||++... .|....+-+.-..+...+=+-+|.+.+|++--.. .+.. ..|.++++ +++.++.-+
T Consensus 410 LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~-~g~~~~~~g~~~t~~~~~ 488 (558)
T PRK04972 410 IGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGA-VGGQMLIAGLIVSLVPVV 488 (558)
T ss_pred ccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 33456899999998873 3333333333333344455678888888887543 2322 23443322 333333334
Q ss_pred HHHHHHHHhhCCChhHHHHHHHHhhhhhh
Q 038780 266 IAVYLPAVWFNTHSTDAAALSLILTVKGI 294 (694)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~lg~~m~~kG~ 294 (694)
++.++.-+.+|+++-. .+|.+-..+..
T Consensus 489 ~~~~~~~~~~k~~~~~--~~G~~aG~~t~ 515 (558)
T PRK04972 489 ICFLFGAYVLRMNRAL--LFGAIMGARTC 515 (558)
T ss_pred HHHHHHHHHHcCCHHH--HHHHHhCCCCC
Confidence 4444444778998764 44555444443
No 160
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=36.88 E-value=5.8e+02 Score=27.68 Aligned_cols=101 Identities=10% Similarity=0.115 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHC------C-CCCCCCch-HHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhH
Q 038780 144 LIVFVTIVLRRLMFWIIRRT------P-EGKPVKSS-YTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLAST 215 (694)
Q Consensus 144 ~~~~~~~v~r~~~~~~~~~~------~-~~~~~~e~-~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~ 215 (694)
|..++..+-+|+++++..+. . +.++++.. -+.+-+..+.+++.+. =.-.+.+|.+++|-.+.+.. . ++
T Consensus 195 YMaLVPiiqPpimklLttkkER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~r 270 (399)
T TIGR03136 195 YLSLTYAGYPYLIKLLVPKKYRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EP 270 (399)
T ss_pred HHHHHhcccchHHHhhcCHHHHcccCccCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HH
Confidence 45556666778887765321 1 22233322 2444455555555542 23358899999999998874 2 55
Q ss_pred HHHHHhhhhhhhhhhHHHhhhcccccccccccC
Q 038780 216 LVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKG 248 (694)
Q Consensus 216 l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~ 248 (694)
+.+..+.-......-+.-..+|.+.+-..+.+.
T Consensus 271 Ls~taqn~l~nivTifLGl~vG~t~~A~~FL~~ 303 (399)
T TIGR03136 271 YQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDP 303 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 555544433333332334577888876666544
No 161
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=35.67 E-value=1.9e+02 Score=26.56 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=45.0
Q ss_pred CCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhC-CCcEEEEecC
Q 038780 453 KVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKA-PSSVGILIDR 513 (694)
Q Consensus 453 ~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~A-pcsVgIlvdr 513 (694)
....+.+.+++++++++.||+|.-.+. ||.........+...+++-++. +++|-. +|.
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV~~-~DE 95 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPVIL-VDE 95 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEEEE-EEC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcEEE-ECC
Confidence 678999999999999999999986554 5665445566788888888887 899844 544
No 162
>PRK03818 putative transporter; Validated
Probab=35.55 E-value=4.4e+02 Score=30.48 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHhhccChHHHH---h-cchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHH-H
Q 038780 3 LYSLTIFGYIFFMFLIGVKMDLSLIT---K-LGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTAT-T 76 (694)
Q Consensus 3 l~~la~~G~i~llF~~Gle~d~~~l~---~-~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~-l 76 (694)
...+.++|+.+|+..+|++--...+. + .+.+...+|..-.++|.+++ .+++++.+ ......+|.+ =
T Consensus 431 ~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~--------~~~~~~~G~~aG 502 (552)
T PRK03818 431 NLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAK--------MNYLTLCGMLAG 502 (552)
T ss_pred HHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHhc
Confidence 35788999999999999988776543 3 35666677777777888877 66544332 2234555544 3
Q ss_pred hhccHHHHHHHH
Q 038780 77 MLTSFPVVACFL 88 (694)
Q Consensus 77 s~Ts~~vv~~iL 88 (694)
+.|++|.+....
T Consensus 503 ~~t~tp~l~~a~ 514 (552)
T PRK03818 503 SMTDPPALAFAN 514 (552)
T ss_pred cCCCcHHHHHHh
Confidence 678888876653
No 163
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=34.85 E-value=1.5e+02 Score=28.33 Aligned_cols=87 Identities=17% Similarity=0.165 Sum_probs=51.1
Q ss_pred chhhhHHHHhhhhcccCCC---CchhHHHHHHhhhhhhhhhhHHHhhhccccccccc---ccCCchhHHHHHHHHHHHHH
Q 038780 192 GIQYFYGPFIFGLTVPTGP---PLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDL---SKGLSYPLVFGMTIGLFFKL 265 (694)
Q Consensus 192 g~~~~lGaf~~GL~i~~~~---p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l---~~~~~~~~~~ii~~~~~~K~ 265 (694)
.+...-|+++.|+++.... |.. +......+..++.+-+|...+|++.-...+ ... .|...++-++.++.-.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~-G~~~~~~~~~i~~~~~ 98 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRG-GLKLLLLGVIITLVPL 98 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 3344457777777776542 111 333444455567788999999999864433 222 3333444444455556
Q ss_pred HHHHHHHH-hhCCChhH
Q 038780 266 IAVYLPAV-WFNTHSTD 281 (694)
Q Consensus 266 ~~~~l~~~-~~~~~~~~ 281 (694)
+.++..++ ++|+++-.
T Consensus 99 ~~~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 99 LIALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 66666676 88888654
No 164
>COG2431 Predicted membrane protein [Function unknown]
Probab=34.48 E-value=1.7e+02 Score=30.37 Aligned_cols=53 Identities=21% Similarity=0.404 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhccC---hHHHH-hcchhHHHHHHHHHHHHHHHH-HHHHHHh
Q 038780 4 YSLTIFGYIFFMFLIGVKMD---LSLIT-KLGKREWCISLSLMFNLLLVG-MICQTIS 56 (694)
Q Consensus 4 ~~la~~G~i~llF~~Gle~d---~~~l~-~~~~~~~~i~~~~~~~p~~~g-~~~~~l~ 56 (694)
+...+..+.+++|.+|.++. ...-+ .-.|+.+..+....+-..+-| +.+.+++
T Consensus 131 ~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~ilssliGG~iaa~~l~ 188 (297)
T COG2431 131 ENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLLSSLIGGLIAAFLLD 188 (297)
T ss_pred hhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999887 22111 122666666666655555555 5544444
No 165
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=34.31 E-value=1.8e+02 Score=31.43 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=50.6
Q ss_pred hhhHHHHhhhhcccCCCCch-----hHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchh-HHHHHHHHHHHHHHH
Q 038780 194 QYFYGPFIFGLTVPTGPPLA-----STLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYP-LVFGMTIGLFFKLIA 267 (694)
Q Consensus 194 ~~~lGaf~~GL~i~~~~p~~-----~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~-~~~ii~~~~~~K~~~ 267 (694)
++.+=+.++|+++.-.++.. +.+.+-++.++ +...|+-.+..|..+..........+. ....+++-++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg-~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLG-AAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 45555556666655443222 56666777766 778999999999988654333221222 233344455555556
Q ss_pred HHHHHHhhCCChh
Q 038780 268 VYLPAVWFNTHST 280 (694)
Q Consensus 268 ~~l~~~~~~~~~~ 280 (694)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 6666677776544
No 166
>PRK01821 hypothetical protein; Provisional
Probab=34.28 E-value=2.8e+02 Score=25.50 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=18.0
Q ss_pred hhHHHh--hhcccccccccccCCchhHHHHHHHHHHHHHH
Q 038780 229 LPLMAT--FCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLI 266 (694)
Q Consensus 229 ~PlFF~--~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~ 266 (694)
+|+||+ .+|.-...+.+.+. .|..++.+++.++.=++
T Consensus 71 m~LfFVPa~VGim~~~~ll~~~-~~~il~~ivvST~lvl~ 109 (133)
T PRK01821 71 MALLFVPIGVGVMQYYDLLRAQ-FGPIVVSCIVSTLVVLL 109 (133)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 578885 55554555555543 23333333334333333
No 167
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=33.25 E-value=77 Score=29.78 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=33.0
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
++++.|.||+|+.-.|.++.+...+. .++++.+..+ -.-..++++++..+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~e-------~p~t~~~~~~~~~~~ 51 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGYE-------FPETYEFVDELAKRY 51 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-STB--------HHHHHHHHHHHHHT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCcc-------CHHHHHHHHHHHhhh
Confidence 47899999999999999999988874 5666544322 122346777776553
No 168
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.69 E-value=2.4e+02 Score=22.70 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCchHHH
Q 038780 138 MALSLSLIVFVTIVLRRLMFWIIRRTPEGKPVKSSYTI 175 (694)
Q Consensus 138 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~~~e~~~~ 175 (694)
.+++++.++..+|+.|..+....+.+| |+.|--+-
T Consensus 11 vl~ll~G~~~G~fiark~~~k~lk~NP---pine~~iR 45 (71)
T COG3763 11 VLALLAGLIGGFFIARKQMKKQLKDNP---PINEEMIR 45 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCHHHHH
Confidence 344444455567888888888888887 45554433
No 169
>COG3329 Predicted permease [General function prediction only]
Probab=32.08 E-value=3.6e+02 Score=28.44 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccCCCChhhHHHH
Q 038780 253 LVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQVRNTGEFTVA 317 (694)
Q Consensus 253 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~~i~~~~f~~l 317 (694)
+..-+.+.++.-+++.++..++-+++..|+..++..-........+.+..-++..-+..+-|...
T Consensus 74 ~~~~~aL~~li~~ia~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 74 VALGVALGFLIVFIAYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 34445555666778888888888999999999998888888778777766665544555555443
No 170
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=31.35 E-value=9.4e+02 Score=28.47 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 038780 5 SLTIFGYIFFMFLIGVKM 22 (694)
Q Consensus 5 ~la~~G~i~llF~~Gle~ 22 (694)
.++++|.-+++|++|+-+
T Consensus 375 M~gD~gyGlll~l~sl~l 392 (660)
T COG1269 375 MFGDLGYGLLLFLISLLL 392 (660)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 478899999999999754
No 171
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=31.30 E-value=84 Score=28.55 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=26.4
Q ss_pred EEEEEcCCCCchHHHHHHHHhcCccEEEecCcccc
Q 038780 445 VFSAISPPKVMHEDICWLAFDKSISLIILPCHRKW 479 (694)
Q Consensus 445 ~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~ 479 (694)
-.-++-|...||..|.++|++-++|++|-|+.+..
T Consensus 73 lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 73 LIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred EEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 44578899999999999999999999999986543
No 172
>COG0679 Predicted permeases [General function prediction only]
Probab=30.68 E-value=6.6e+02 Score=26.46 Aligned_cols=139 Identities=12% Similarity=0.109 Sum_probs=79.7
Q ss_pred hchhhhHHHHhhhhcccCC-CCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHH
Q 038780 191 VGIQYFYGPFIFGLTVPTG-PPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVY 269 (694)
Q Consensus 191 ~g~~~~lGaf~~GL~i~~~-~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~ 269 (694)
.=.+|.+=|+++|+++... -++...+.+-++.+. +--.|+=++..|+.++..................-.+...+.++
T Consensus 165 ~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~-~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~ 243 (311)
T COG0679 165 LLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLA-SAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVAL 243 (311)
T ss_pred HHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-HhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHH
Confidence 3456777777788777642 234456666666665 77899999999999998544433111122222224666777788
Q ss_pred HHHHhhCCChhHHHHHHHHh--hhhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHHHHHHh
Q 038780 270 LPAVWFNTHSTDAAALSLIL--TVKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIPIIVRK 334 (694)
Q Consensus 270 l~~~~~~~~~~~~~~lg~~m--~~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~~l~~~ 334 (694)
+..+.++++..+.. ...++ .+-+....+++. +.+.=.+..-+.+.++.+++....|.....
T Consensus 244 ~~~~~~~l~~~~~~-v~vl~~a~P~A~~~~v~a~---~~~~~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 244 LVAKLLGLSGLALQ-VLVLLSAMPTAVNAYVLAR---QYGGDPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHHHHcCCChHHHH-HHHHHhhCcHHhHHHHHHH---HhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776552 23333 455555555544 344333344444444444443333343333
No 173
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=30.16 E-value=1.3e+02 Score=27.64 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=41.6
Q ss_pred chHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecC
Q 038780 455 MHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDR 513 (694)
Q Consensus 455 m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr 513 (694)
..+.+..++++++++.||+|.-.+ .+|.........+...+++-++.+++| .++|.
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DE 97 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN--MDGTEGPRTERARKFANRLEGRFGLPV-VLVDE 97 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC--CCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcC
Confidence 468899999999999999998654 356654444567778888777768887 44554
No 174
>PRK01658 holin-like protein; Validated
Probab=30.03 E-value=3.2e+02 Score=24.69 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=18.5
Q ss_pred hhHHHh--hhcccccccccccCCchhHHHHHHHHHHHHHHH
Q 038780 229 LPLMAT--FCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIA 267 (694)
Q Consensus 229 ~PlFF~--~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~ 267 (694)
+|+||+ .+|.--..+.+..+ .|..++.+++.++.=++.
T Consensus 66 m~llFVPa~VGi~~~~~ll~~~-~~~il~~ivvsT~l~l~v 105 (122)
T PRK01658 66 LPLFFIPSAVGVMNYGDFLSSK-GISLFLVVVISTFVVMIV 105 (122)
T ss_pred HHHHHHHhhhHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 578886 45554445555543 343444444444433333
No 175
>COG0679 Predicted permeases [General function prediction only]
Probab=30.03 E-value=4.7e+02 Score=27.60 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=57.5
Q ss_pred hhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchh-HHHHHHHHHHHHHHHHHHHHH
Q 038780 195 YFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYP-LVFGMTIGLFFKLIAVYLPAV 273 (694)
Q Consensus 195 ~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~-~~~ii~~~~~~K~~~~~l~~~ 273 (694)
+++.-...|..+.+.....++-.+-++.++..+.+|..+...=.+.+.+... .+. .+...+..++.=++...+..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655566677778999999999999987766666655441 122 233333333344445555555
Q ss_pred hhCCChhHH--HHHHHHhhhhhhhh
Q 038780 274 WFNTHSTDA--AALSLILTVKGIVE 296 (694)
Q Consensus 274 ~~~~~~~~~--~~lg~~m~~kG~~~ 296 (694)
..+.+.++. ...+...+.-|-+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg 112 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLG 112 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhh
Confidence 666666644 33334444445544
No 176
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=29.91 E-value=7.5e+02 Score=26.87 Aligned_cols=226 Identities=17% Similarity=0.140 Sum_probs=116.6
Q ss_pred EEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcc--------hhhcc----cc---ccCCCCCCCCchhHH
Q 038780 363 VCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTP--------LLINH----QL---GQKYSKSGAHRQPII 427 (694)
Q Consensus 363 v~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~--------~~~~~----~~---~~~~~~~~~~~~~i~ 427 (694)
.++++.++++..-++++++.... .++.+-..|. ||-.. ...+. .. ...+..+....++++
T Consensus 74 ~~l~~d~~i~~~~~vt~avH~~G-~~i~iQL~H~----Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii 148 (363)
T COG1902 74 PGLWSDAQIPGLKRLTEAVHAHG-AKIFIQLWHA----GRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVI 148 (363)
T ss_pred CccCChhHhHHHHHHHHHHHhcC-CeEEEEeccC----cccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHH
Confidence 45778888999999999998533 4566666665 32110 00010 00 001112334566777
Q ss_pred HHHHHHhHhC---C-CceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCc-cc-cCCCCccccchhHHHHHHHHHhh
Q 038780 428 HVFRYFKAEH---P-KFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCH-RK-WNAKGELISDSQVLRNLNSKVLH 501 (694)
Q Consensus 428 ~af~~~~~~~---~-~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h-~~-~~~dg~~~~~~~~~r~~n~~Vl~ 501 (694)
+.|.+-++.. . ..|.+|.- |.=..+ --+-|.. ++ ....|+++..-+...++.+.|-+
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~A---------hGYLi~--------qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~ 211 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGA---------HGYLLS--------QFLSPLTNKRTDEYGGSLENRARFLLEVVDAVRE 211 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeec---------cchHHH--------HhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHH
Confidence 7777665432 2 56776641 111111 1111221 11 22346677777788889999988
Q ss_pred hCCCc--EEEEecCCCCCCCCccccCCceeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcC-c-cccc-
Q 038780 502 KAPSS--VGILIDRSRIHGPSSIFVAPFVYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESG-Y-ARWT- 576 (694)
Q Consensus 502 ~Apcs--VgIlvdr~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~-~-~~~e- 576 (694)
.-+.+ ||+ |.. +.. . ...+|.+-.|+.++++.+.+... +-.+++....... . ....
T Consensus 212 ~vg~~~~vg~---Rls--~~d----------~--~~~~g~~~~e~~~la~~L~~~G~--~d~i~vs~~~~~~~~~~~~~~ 272 (363)
T COG1902 212 AVGADFPVGV---RLS--PDD----------F--FDGGGLTIEEAVELAKALEEAGL--VDYIHVSEGGYERGGTITVSG 272 (363)
T ss_pred HhCCCceEEE---EEC--ccc----------c--CCCCCCCHHHHHHHHHHHHhcCC--ccEEEeecccccCCCCccccc
Confidence 87764 554 432 011 0 11228888999999999988764 3344443332210 0 0000
Q ss_pred cchHHHHHHHhhhcccccCCCcEEEEEEEecCchHHHHHHHhhhcCCcEEEEcccCCCCC
Q 038780 577 NTIDDEFLNGLKKNDEILGNLNIIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRRRSDS 636 (694)
Q Consensus 577 ~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~s 636 (694)
...-..+.+.++... ...+.-.- .+.+.+...+.+++ ...|||-+||-.-.++
T Consensus 273 ~~~~~~~a~~i~~~~----~~pvi~~G-~i~~~~~Ae~~l~~--g~aDlVa~gR~~ladP 325 (363)
T COG1902 273 PGYQVEFAARIKKAV----RIPVIAVG-GINDPEQAEEILAS--GRADLVAMGRPFLADP 325 (363)
T ss_pred cchhHHHHHHHHHhc----CCCEEEeC-CCCCHHHHHHHHHc--CCCCEEEechhhhcCc
Confidence 001113444444432 12222111 13455555555555 4699999999875554
No 177
>PRK09903 putative transporter YfdV; Provisional
Probab=29.85 E-value=6e+02 Score=26.75 Aligned_cols=80 Identities=4% Similarity=-0.108 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHhhccChHHHHhcchhHHHHHHHHH-HHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHhhcc
Q 038780 2 NLYSLTIFGYIFFMFLIGVKMDLSLITKLGKREWCISLSLM-FNLLLVGMICQTISQILEPQEYLDDWIDLFTATTMLTS 80 (694)
Q Consensus 2 ~l~~la~~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~-~~p~~~g~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts 80 (694)
.++.+++...-+-||..|+.+....++.. ++.+...+.-. +.|++.....++++. .....-...+++...
T Consensus 199 ~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~~P~i~~~~~~~~~l--------~~~~~~v~vl~aa~P 269 (314)
T PRK09903 199 TFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLILMPLALLLVGMACHL--------NSEHLQMMVLAGALP 269 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHccc
Confidence 46677888888888999988766554333 33333222222 345533222222221 122333444555555
Q ss_pred HHHHHHHHHh
Q 038780 81 FPVVACFLMH 90 (694)
Q Consensus 81 ~~vv~~iL~e 90 (694)
.++.+.++.+
T Consensus 270 ~a~~~~i~A~ 279 (314)
T PRK09903 270 PAFSGIIIAS 279 (314)
T ss_pred HHHHHHHHHH
Confidence 5566665554
No 178
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=29.54 E-value=3.4e+02 Score=27.51 Aligned_cols=86 Identities=10% Similarity=0.044 Sum_probs=54.5
Q ss_pred EEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCCCCCCCccc
Q 038780 444 QVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIHGPSSIF 523 (694)
Q Consensus 444 ~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~~~~~~~ 523 (694)
..++-++|.+...++..+.+.+..+|.|++| |+..-+......+.+.+ ++.+-||-++..... .+
T Consensus 9 ~h~~liDP~k~~~~~~~~~~~~~gtdai~vG--------GS~~vt~~~~~~~v~~i-k~~~lPvilfp~~~~-----~i- 73 (232)
T PRK04169 9 LHVTLLDPDKPLPDEALEAICESGTDAIIVG--------GSDGVTEENVDELVKAI-KEYDLPVILFPGNIE-----GI- 73 (232)
T ss_pred eEEEEECCCCCCCHHHHHHHHhcCCCEEEEc--------CCCccchHHHHHHHHHH-hcCCCCEEEeCCCcc-----cc-
Confidence 5677899999888888888999999999999 32211222334445454 447778767643332 11
Q ss_pred cCCceeEEEEeccCCcchHHHH
Q 038780 524 VAPFVYRLAVLYMGGEDDMEAL 545 (694)
Q Consensus 524 ~~~~~~~I~~~f~gg~ddreAl 545 (694)
.....-+.+|..-..+|.+++
T Consensus 74 -~~~aDa~l~~svlNs~~~~~i 94 (232)
T PRK04169 74 -SPGADAYLFPSVLNSRNPYWI 94 (232)
T ss_pred -CcCCCEEEEEEEecCCCcchH
Confidence 112456777777666665543
No 179
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=28.37 E-value=6.4e+02 Score=27.05 Aligned_cols=130 Identities=16% Similarity=0.091 Sum_probs=68.7
Q ss_pred CccccchhHHHHHHHHHhhhCCCcEEEEecCCCCCCCCccccCCceeEEEEeccCCcchHHHHHHHHHHHhCCCeE-EEE
Q 038780 483 GELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIHGPSSIFVAPFVYRLAVLYMGGEDDMEALAYARRMARSSRVH-LTV 561 (694)
Q Consensus 483 g~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~-ltv 561 (694)
|.++..-....++.+.|-+..+.++-|- -|.. .. . ...||.+-.|++++++++.+...+. ++|
T Consensus 185 GslenR~r~~~eiv~~ir~~vg~~~~v~-iRl~---~~-----~-------~~~~G~~~~e~~~~~~~l~~~G~vd~i~v 248 (343)
T cd04734 185 GSLENRMRFLLEVLAAVRAAVGPDFIVG-IRIS---GD-----E-------DTEGGLSPDEALEIAARLAAEGLIDYVNV 248 (343)
T ss_pred CCHHHHhHHHHHHHHHHHHHcCCCCeEE-EEee---hh-----h-------ccCCCCCHHHHHHHHHHHHhcCCCCEEEe
Confidence 4555555667778888877765543221 2321 00 0 1247788899999999998765322 333
Q ss_pred EEEeecCC----c-C-ccccccchHHHHHHHhhhcccccCCCcEEEEEEEecCchHHHHHHHhhhcCCcEEEEcccCCCC
Q 038780 562 IHFTLSKE----S-G-YARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRRRSD 635 (694)
Q Consensus 562 ~~~~~~~~----~-~-~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~ 635 (694)
-.=..... . . ....+.....++.+.+++.. +..+..+-. +.+.++..+.+++ ...|+|.+||.--.+
T Consensus 249 s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~----~ipvi~~G~-i~~~~~~~~~l~~--~~~D~V~~gR~~lad 321 (343)
T cd04734 249 SAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV----DLPVFHAGR-IRDPAEAEQALAA--GHADMVGMTRAHIAD 321 (343)
T ss_pred CCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc----CCCEEeeCC-CCCHHHHHHHHHc--CCCCeeeecHHhHhC
Confidence 11000000 0 0 00111112235666666532 234544332 3455666677765 679999999986444
No 180
>PRK04148 hypothetical protein; Provisional
Probab=28.04 E-value=70 Score=29.42 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=29.8
Q ss_pred EEEEcCCCCchHHHHHHHHhcCccEEEecCcccc
Q 038780 446 FSAISPPKVMHEDICWLAFDKSISLIILPCHRKW 479 (694)
Q Consensus 446 ~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~ 479 (694)
.-++-|...|+..|.++|++-++|++|-|..+..
T Consensus 81 iysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 81 IYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3477888999999999999999999999986543
No 181
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=27.44 E-value=7.7e+02 Score=27.16 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhchhhhHHHHhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHHHHHHH
Q 038780 180 LVIVVAVVGETVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTI 259 (694)
Q Consensus 180 ~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~ 259 (694)
+.+.++.++..+.-..++|++.+-+++.-- ++|- -.-.|+|+...| +..-+.+... ..-++.+.+
T Consensus 198 LGl~~~ai~~ll~~~~~~as~~F~LAlnyK---------QMeL---Y~A~pfF~fLLg-~c~k~k~~~~--f~ri~~ia~ 262 (510)
T KOG2575|consen 198 LGLTLYAIAALLKNFYVLASVLFVLALNYK---------QMEL---YHALPFFAFLLG-SCLKPKLFNS--FARIIKIAL 262 (510)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHH---------HHHH---HhchHHHHHHHH-HHhcccchHH--HHHHHHHHH
Confidence 445667777888888999999998887533 1221 344677777888 5554444321 224555566
Q ss_pred HHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccccC-------CCChhhHHHHHHHHHHHHHHHHHHH
Q 038780 260 GLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFNKQ-------VRNTGEFTVAVVLILILASIIPIIV 332 (694)
Q Consensus 260 ~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~~~-------~i~~~~f~~lv~~~lltt~i~~~l~ 332 (694)
++++-++.+|++-.+.+-...+-+- =+.=-.||.+|==+++++-..+ +...+...++.+...+.+. -|-.+
T Consensus 263 ~Vv~TF~iiw~P~~~~~~~~~qvl~-RlFPf~RGlfEDKVANfWCt~n~~~K~k~~ft~q~~~~iSl~~Tli~~-LPs~v 340 (510)
T KOG2575|consen 263 AVVGTFVIIWLPFLLSGDTALQVLH-RLFPFARGLFEDKVANFWCTFNVFLKIKELFTQQQLQVISLAATLIGS-LPSMV 340 (510)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHH-HhCchhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH-hHHHH
Confidence 6777888888887766633333221 1223368999999999886543 3334443333333333222 35566
Q ss_pred HhhccccCCCCCc
Q 038780 333 RKLHDFSNTYPGY 345 (694)
Q Consensus 333 ~~l~~p~~~~~~~ 345 (694)
..+.+|+++-..|
T Consensus 341 ~l~L~P~~~~f~~ 353 (510)
T KOG2575|consen 341 VLFLRPTNKGFLY 353 (510)
T ss_pred HHhhcccccchhh
Confidence 6667787765443
No 182
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=27.00 E-value=4.9e+02 Score=26.59 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=29.8
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCC--CeEEEEEEEee
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSS--RVHLTVIHFTL 566 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~--~v~ltv~~~~~ 566 (694)
..+|++.+.||+|.--.|.++.++.+.. +.++..+++..
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 3579999999999988888888887654 45677777643
No 183
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=26.26 E-value=1.1e+02 Score=34.01 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=35.0
Q ss_pred hHHHHHHHhhhcccccCCCcEEEEEEE--ecCchHHHHHHHhhh--cCCcEEEEcccCCC
Q 038780 579 IDDEFLNGLKKNDEILGNLNIIYKEEA--VKDGSDTAMIIRSME--EKYDLVLVGRRRRS 634 (694)
Q Consensus 579 ~d~~~i~~~~~~~~~~~~~~v~y~e~~--v~~g~~~~~~i~~~~--~~~DLiiVG~~~~~ 634 (694)
...+.+..++.+.+ .-+-+.|.-.+ .+.+.++++.|+..+ .+.|.+||||++|.
T Consensus 148 airDIl~~~~rR~P--~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 148 ALRDILHTLSRRFP--SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred HHHHHHHHHHhhCC--CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 45567777777754 22333343322 344568888888875 44899999999974
No 184
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=26.11 E-value=2.4e+02 Score=30.25 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=57.9
Q ss_pred cEEEEecCCCCCCCCccccCCceeEEEEeccCCcc--hHH----HHHHHHHHHhCCCeEEEEEEEeecCCcCccccccch
Q 038780 506 SVGILIDRSRIHGPSSIFVAPFVYRLAVLYMGGED--DME----ALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTI 579 (694)
Q Consensus 506 sVgIlvdr~~~~~~~~~~~~~~~~~I~~~f~gg~d--dre----Al~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~ 579 (694)
-||+++|-.. |. --|+.+ .|.| -.| |...++|+-+..+.+ ...+|+++... .
T Consensus 3 ~VGiivNP~A--G~--------g~r~~l---kGaDg~~~e~~~ra~~~v~rfL~~l~~~-~~~~flt~p~~--------m 60 (355)
T COG3199 3 KVGIIVNPIA--GR--------GGRVLL---KGADGLVAEAPKRAIVRVKRFLKKLDAN-GDVEFLTPPGP--------M 60 (355)
T ss_pred eeEEEecCcc--cC--------Cceeec---cccCcchhhhhHHHHHHHHHHHHhcccc-CceEEEeCCcc--------c
Confidence 4788887743 11 123433 4455 233 456678887777733 23445544321 1
Q ss_pred HHHHHHHhhhcccccCCCcEEEEEEEe-cCchHHHHHHHhhhc-CCcEEEEcccCCC
Q 038780 580 DDEFLNGLKKNDEILGNLNIIYKEEAV-KDGSDTAMIIRSMEE-KYDLVLVGRRRRS 634 (694)
Q Consensus 580 d~~~i~~~~~~~~~~~~~~v~y~e~~v-~~g~~~~~~i~~~~~-~~DLiiVG~~~~~ 634 (694)
-+..+..+..++ ..+.|.|..- ...+||.++.++|.+ +-|||++--+-|.
T Consensus 61 G~~~~~~~~~~~-----~v~~~~~~~~~tTa~DT~~~~r~~~~~gVdlIvfaGGDGT 112 (355)
T COG3199 61 GESLAEASGFKY-----RVIRFQESTPRTTAEDTINAVRRMVERGVDLIVFAGGDGT 112 (355)
T ss_pred chhHHHhhcCcc-----eEEeecccCCCccHHHHHHHHHHHHhcCceEEEEeCCCcc
Confidence 223344443332 2223877664 566899999999986 7999888655443
No 185
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=26.06 E-value=2e+02 Score=29.61 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=17.7
Q ss_pred EEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEee
Q 038780 531 LAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTL 566 (694)
Q Consensus 531 I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~ 566 (694)
+++.|.||+|+--.|.++.+...+ +.|+++.+
T Consensus 42 ~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~DT 73 (261)
T COG0175 42 VVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLDT 73 (261)
T ss_pred eEEEecCchhHHHHHHHHHHhcCC----CcEEEEeC
Confidence 556666666665555555555444 44454433
No 186
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=25.89 E-value=7.6e+02 Score=25.84 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=51.1
Q ss_pred eEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCC
Q 038780 441 VQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSR 515 (694)
Q Consensus 441 v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~ 515 (694)
..|-.|...+ ..+...+++.|++.++..||.-..+.-...| ...+........+++++||++=-|.+.
T Consensus 18 yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 18 YAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred CeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 3455565666 6888999999999999999987654432211 234677788889999999999889985
No 187
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=25.34 E-value=4.2e+02 Score=28.46 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=70.1
Q ss_pred CccccchhHHHHHHHHHhhhCCCcEEEEecCCCCCCCCccccCCceeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEE
Q 038780 483 GELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIHGPSSIFVAPFVYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVI 562 (694)
Q Consensus 483 g~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~ 562 (694)
|+++..-+...++.+.|-+..+-+|++ |... .. ...||.+..|++++++++.+. + +..+
T Consensus 186 GslenR~Rf~~eii~~ir~~~~~~v~v---Ris~--------~d-------~~~~G~~~~e~~~i~~~l~~~-g--vD~i 244 (337)
T PRK13523 186 GSPENRYRFLREIIDAVKEVWDGPLFV---RISA--------SD-------YHPGGLTVQDYVQYAKWMKEQ-G--VDLI 244 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCeEE---Eecc--------cc-------cCCCCCCHHHHHHHHHHHHHc-C--CCEE
Confidence 556666667778888887776666655 3210 00 123688889999999999764 3 3444
Q ss_pred EEeecCCcC-ccccccchHHHHHHHhhhcccccCCCcEEEEEEEecCchHHHHHHHhhhcCCcEEEEcccCCCC
Q 038780 563 HFTLSKESG-YARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRRRSD 635 (694)
Q Consensus 563 ~~~~~~~~~-~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~ 635 (694)
++....... ..........++.++++... +..|...-. +.+.++..+.+++ ..+|+|.+||.--.+
T Consensus 245 ~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~----~ipVi~~G~-i~~~~~a~~~l~~--g~~D~V~~gR~~iad 311 (337)
T PRK13523 245 DVSSGAVVPARIDVYPGYQVPFAEHIREHA----NIATGAVGL-ITSGAQAEEILQN--NRADLIFIGRELLRN 311 (337)
T ss_pred EeCCCCCCCCCCCCCccccHHHHHHHHhhc----CCcEEEeCC-CCCHHHHHHHHHc--CCCChHHhhHHHHhC
Confidence 442221100 00001111335666666542 223433222 3455566667766 669999999986443
No 188
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=25.22 E-value=2.1e+02 Score=26.62 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=41.4
Q ss_pred chHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecC
Q 038780 455 MHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDR 513 (694)
Q Consensus 455 m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr 513 (694)
-.+.+.++.++.+++.||+|+-.+. +|.........+...+++-++-+.|| +++|.
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m--~g~~~~~~~~~~~f~~~L~~r~~lpv-~l~DE 96 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNM--DGTEGPRAELARKFAERLKKRFNLPV-VLWDE 96 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCC--CCCcchhHHHHHHHHHHHHHhcCCCE-EEEcC
Confidence 4689999999999999999986543 44433334457778888888888997 44443
No 189
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=25.18 E-value=3.8e+02 Score=28.97 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 457 EDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 457 ~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
.+-.+.+++.+.|.|.|--.-.. .||. +..+++++..||||-++
T Consensus 37 ~~a~~~~~~~~PDVi~ld~emp~-mdgl---------~~l~~im~~~p~pVimv 80 (350)
T COG2201 37 REAIDKVKKLKPDVITLDVEMPV-MDGL---------EALRKIMRLRPLPVIMV 80 (350)
T ss_pred HHHHHHHHhcCCCEEEEeccccc-ccHH---------HHHHHHhcCCCCcEEEE
Confidence 45578889999999998854322 1221 25678999999998665
No 190
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=25.03 E-value=6.5e+02 Score=24.49 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=41.8
Q ss_pred hhhHHHHhhhhcccCCCCchhHHHHHHhhh------hhhhhhhHHHhhhcccc-------c---ccccccC-CchhHHHH
Q 038780 194 QYFYGPFIFGLTVPTGPPLASTLVEKLDTI------VTGLFLPLMATFCGLKS-------N---LRDLSKG-LSYPLVFG 256 (694)
Q Consensus 194 ~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~------~~~~f~PlFF~~~Gl~~-------d---l~~l~~~-~~~~~~~i 256 (694)
..+++++++=++...+ .+.+.....+... ..+-++|+||..-...- + ...+... ..|...+.
T Consensus 86 ~~ii~gliaeli~~~g-~Yks~~~~~ia~~~~~~~~~~g~~~p~~~~~d~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 164 (189)
T TIGR02185 86 SSIIGGLLADIIASTG-GYKNKRKVTIAYVLFFLLVAMGPILPIWLFKDEYIAFFAARGDSAEYIDQYIKYVSAIWAVIM 164 (189)
T ss_pred HHHHHHHHHHHHHHhC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHhcchHHHHHH
Confidence 4556667777776654 3443333322211 12345788874322211 1 1111111 12335556
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q 038780 257 MTIGLFFKLIAVYLPAVWFN 276 (694)
Q Consensus 257 i~~~~~~K~~~~~l~~~~~~ 276 (694)
++...++=++|+++..+..|
T Consensus 165 ~~~t~v~~~iG~~iG~kllk 184 (189)
T TIGR02185 165 IVLTAVAGIAGVLIGKKLLK 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66667777888888887764
No 191
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=24.58 E-value=4.5e+02 Score=26.37 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=35.3
Q ss_pred eEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhc
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKN 590 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~ 590 (694)
.++++.|.||+|+.-.|.++.+.. ++ .+.|+.+.+..++.+ ..++++++..+
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~-~~--~i~vv~vDTg~~fpE-------T~e~~d~~~~~ 77 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSIS-EP--MIPVIFIDTLYHFPQ-------TLTLKDELTKK 77 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhh-CC--CCCEEEEeCCCCCHH-------HHHHHHHHHHH
Confidence 358899999999999999999876 23 366777665544322 23456665544
No 192
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=24.17 E-value=3.4e+02 Score=28.90 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH
Q 038780 11 YIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG 49 (694)
Q Consensus 11 ~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g 49 (694)
+.+||...|++-- ++++.-+|..+..-..++++|.+-+
T Consensus 213 L~lFLLeMGl~A~-~rL~~l~~~g~~li~Fgi~~Pli~a 250 (327)
T PF05982_consen 213 LCLFLLEMGLVAA-RRLRDLRKVGWFLIAFGILMPLINA 250 (327)
T ss_pred HHHHHHHhhHHHH-HhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 4466777777542 3344444444455566677777654
No 193
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=23.97 E-value=70 Score=27.81 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.0
Q ss_pred CCchHHHHHHHHhcCccEEEecC
Q 038780 453 KVMHEDICWLAFDKSISLIILPC 475 (694)
Q Consensus 453 ~~m~~~I~~~A~e~~~~lIilp~ 475 (694)
.+=++++++.|+++++|++|+|-
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESS
T ss_pred CCCHHHHHHHHHHcCCCEEEECC
Confidence 45589999999999999999994
No 194
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=23.73 E-value=1.4e+02 Score=32.51 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhccChHHHHhcchhHHHHHHHHHHHHHHHH-HHHHH
Q 038780 9 FGYIFFMFLIGVKMDLSLITKLGKREWCISLSLMFNLLLVG-MICQT 54 (694)
Q Consensus 9 ~G~i~llF~~Gle~d~~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~ 54 (694)
.|..+.|+-.|.+.|++.+++..++...+++. ++.-+.+. ..++.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG-~v~q~~i~pl~~f~ 162 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALG-FVPQYLIMPLLGFL 162 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeeh-HHHHHHHHHHHHHh
Confidence 57788999999999999999999998765433 33344444 44444
No 195
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.51 E-value=8.6e+02 Score=25.41 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=51.5
Q ss_pred ceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCC
Q 038780 440 FVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSR 515 (694)
Q Consensus 440 ~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~ 515 (694)
...|-.|-..+ ..+.+.|++.|++.++..||.-..+....-| ...+....+...+++++||++=-|.+.
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~ 85 (284)
T PRK12737 17 GYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHE 85 (284)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 34555666666 6889999999999999999976544322111 234677888999999999999889885
No 196
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=23.43 E-value=2.1e+02 Score=26.85 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=47.4
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEEEEecCc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAVKDG 609 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g 609 (694)
++++.+.||.|.--++.++.+. +.++..+++..... . + .+.+.++++..+. + . ..|.+ .++.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~~~--~---~--~~~~~~~~~~~~~---g-~-~~~~~--~~~~ 62 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYGQR--H---A--KEEEAAKLIAEKL---G-P-STYVP--ARNL 62 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECCCC--C---h--hHHHHHHHHHHHH---C-C-CEEEe--CcCH
Confidence 4789999999999998888763 34566676643211 0 1 1224555554432 1 1 22221 1221
Q ss_pred hHHHHHHHhh--hcCCcEEEEcccCCC
Q 038780 610 SDTAMIIRSM--EEKYDLVLVGRRRRS 634 (694)
Q Consensus 610 ~~~~~~i~~~--~~~~DLiiVG~~~~~ 634 (694)
.....+.+. ..++|-++.|.+.+.
T Consensus 63 -~~~~~l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 63 -IFLSIAAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred -HHHHHHHHHHHHCCCCEEEEeeccCc
Confidence 122333333 257899999988753
No 197
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=23.39 E-value=4.2e+02 Score=29.52 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=51.6
Q ss_pred eEEEEeccCCcchHHHHHHHHHHH-hCCCeEEEEEEEeec-CCcCccccccchHHHHHHHhhhcccccCCCcEEEEEEEe
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMA-RSSRVHLTVIHFTLS-KESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAV 606 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma-~~~~v~ltv~~~~~~-~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v 606 (694)
-+||+.|.||-|.---..++.+.+ .|.-+.+-=+.|..+ ...+++-.++++-..-++|++...+ .....+.|..|
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P---~R~~nlV~vnV 327 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYP---KRSWNLVEVNV 327 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCcccccCCccHHHHHHHHHHHHHhCC---cceEEEEeccC
Confidence 479999999999988888888886 444455444444322 2222233567778889999998764 44566777666
Q ss_pred c
Q 038780 607 K 607 (694)
Q Consensus 607 ~ 607 (694)
.
T Consensus 328 ~ 328 (520)
T KOG0573|consen 328 T 328 (520)
T ss_pred C
Confidence 3
No 198
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=23.11 E-value=4.6e+02 Score=27.76 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=44.1
Q ss_pred hHHHHhhhhcccCCCCchhHHH-HHHhhhhhhhhhhHHHhhhcccccccccccC-Cchh-HHHHHHHHHHHHHHHHHHHH
Q 038780 196 FYGPFIFGLTVPTGPPLASTLV-EKLDTIVTGLFLPLMATFCGLKSNLRDLSKG-LSYP-LVFGMTIGLFFKLIAVYLPA 272 (694)
Q Consensus 196 ~lGaf~~GL~i~~~~p~~~~l~-~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~-~~~~-~~~ii~~~~~~K~~~~~l~~ 272 (694)
++++.++|...|.-...+..+. |... .+.+.+.|...|++++...+... ..|- .+...+..++.=.+.++...
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~~~~~~----~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~ 82 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIKPEYVI----KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLS 82 (313)
T ss_pred HHHHHHHHHHcCcccccCCccchhhhH----HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888887543333332 2222 22355556668999998877543 1343 22222233333333333444
Q ss_pred HhhCCChhHHHHHHHHhh
Q 038780 273 VWFNTHSTDAAALSLILT 290 (694)
Q Consensus 273 ~~~~~~~~~~~~lg~~m~ 290 (694)
+..+-...+.+..|+...
T Consensus 83 ~l~~~~~~~~l~~Gl~~~ 100 (313)
T PF13593_consen 83 RLFPAFLPPELALGLLIL 100 (313)
T ss_pred HHhhccCCHHHHHHHHHH
Confidence 444322223355555443
No 199
>PRK00523 hypothetical protein; Provisional
Probab=22.98 E-value=4.2e+02 Score=21.57 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCchHH
Q 038780 146 VFVTIVLRRLMFWIIRRTPEGKPVKSSYT 174 (694)
Q Consensus 146 ~~~~~v~r~~~~~~~~~~~~~~~~~e~~~ 174 (694)
+..+|+.|..+...++.+| |++|--+
T Consensus 20 ~~Gffiark~~~k~l~~NP---pine~mi 45 (72)
T PRK00523 20 IIGYFVSKKMFKKQIRENP---PITENMI 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHCc---CCCHHHH
Confidence 3456777887877787777 4555443
No 200
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=22.46 E-value=7.2e+02 Score=24.09 Aligned_cols=124 Identities=13% Similarity=0.215 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCchHHHHHHHHHHHHHHHHH--HhchhhhHHHHhhhhcccCCCCchhHHHHHHhhh--
Q 038780 148 VTIVLRRLMFWIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGE--TVGIQYFYGPFIFGLTVPTGPPLASTLVEKLDTI-- 223 (694)
Q Consensus 148 ~~~v~r~~~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae--~~g~~~~lGaf~~GL~i~~~~p~~~~l~~kl~~~-- 223 (694)
...+..|+.-.+..|.|+- ...++..+...++.....+ ..-...+++++++=++...+ .+.+.-...+...
T Consensus 40 ~ali~g~vyml~~~KV~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g-~y~~~~~~~iay~vf 114 (186)
T PF09605_consen 40 AALICGIVYMLMVAKVPKR----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKG-GYKSKKRNTIAYAVF 114 (186)
T ss_pred HHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHH
Confidence 3344455566677777642 2222222222222222222 23344567777777777655 3444333333221
Q ss_pred ---hhhhhhhHHHhhhccc---------cc-ccccccC-CchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 038780 224 ---VTGLFLPLMATFCGLK---------SN-LRDLSKG-LSYPLVFGMTIGLFFKLIAVYLPAVWFN 276 (694)
Q Consensus 224 ---~~~~f~PlFF~~~Gl~---------~d-l~~l~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 276 (694)
..+-++|++|..-... -+ ...+.+. ..|..+++++..+++=++|+++..+..|
T Consensus 115 ~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 115 SLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256788887644433 11 0111111 1233566666777788888888877654
No 201
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=22.44 E-value=1.3e+03 Score=27.02 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q 038780 140 LSLSLIVFVTIVLRRLMFWIIRRT 163 (694)
Q Consensus 140 ~~~~~~~~~~~v~r~~~~~~~~~~ 163 (694)
++++-....+++.|+++.|+.++.
T Consensus 574 GIl~S~ftAi~vtr~l~~~~~~~~ 597 (604)
T PRK12933 574 GLLTSMFTGIFASRALINLVYGRD 597 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 333333446677888887776553
No 202
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=22.05 E-value=1e+03 Score=27.94 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=9.1
Q ss_pred CCcEEEEEEeeccCC
Q 038780 387 SPLSVYGLYLEPLTG 401 (694)
Q Consensus 387 ~p~~v~~Lhlvel~~ 401 (694)
+|.+=.++.|-|.++
T Consensus 483 aP~~G~v~~L~~v~D 497 (627)
T PRK09824 483 SPMTGEVVPLEQVAD 497 (627)
T ss_pred cccceEEeeHHHCCC
Confidence 565556666666555
No 203
>PRK09903 putative transporter YfdV; Provisional
Probab=22.03 E-value=9.3e+02 Score=25.26 Aligned_cols=135 Identities=8% Similarity=-0.001 Sum_probs=74.3
Q ss_pred hhhHHHHhhhhcccCC-CCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHH
Q 038780 194 QYFYGPFIFGLTVPTG-PPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPA 272 (694)
Q Consensus 194 ~~~lGaf~~GL~i~~~-~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~ 272 (694)
+|.+=|.++|+++.-. -++.+.+.+-++.+. +-..|+-...+|+.+....+.. .+......++-.+.-.+.+++..
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg-~~~~PlaL~~iG~~L~~~~~~~--~~~~~~~~~~Kli~~P~i~~~~~ 249 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLIA-KANSGVAVFAAGLTLAAHKFEF--SAEIAYNTFLKLILMPLALLLVG 249 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888866432 245567777777765 7789999999999986554421 12111122222222233445555
Q ss_pred HhhCCChhHHHHHHHHhh--hhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q 038780 273 VWFNTHSTDAAALSLILT--VKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIPIIVRKLH 336 (694)
Q Consensus 273 ~~~~~~~~~~~~lg~~m~--~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~~l~~~l~ 336 (694)
..++.+.... ....+++ +-+....+++ .+.|. |++.-+..+....+.++++-|++-++.
T Consensus 250 ~~~~l~~~~~-~v~vl~aa~P~a~~~~i~A---~~y~~-~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 250 MACHLNSEHL-QMMVLAGALPPAFSGIIIA---SRFNV-YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHcCCCcHHH-HHHHHHHcccHHHHHHHHH---HHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667764332 3333333 3444444443 34443 555555555555555666666665543
No 204
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=22.03 E-value=9.6e+02 Score=25.42 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=63.0
Q ss_pred hhhhhHHHhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHhhhhhhhhhhhhccccc
Q 038780 226 GLFLPLMATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWFNTHSTDAAALSLILTVKGIVELGTFGTNFN 305 (694)
Q Consensus 226 ~~f~PlFF~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~~~lg~~m~~kG~~~li~~~~~~~ 305 (694)
.+++=.|++.++.-.|+..+...+.|+ +......+...+..+..++.++.+..+- .++.+-|..|-.+.-....+++
T Consensus 276 tv~lY~~v~vias~Ad~~~i~taP~~i--~~gf~il~~h~~v~f~~~KlF~~dL~~i-~~AslAniGG~~sAp~~A~A~n 352 (384)
T COG5505 276 TVLLYLFVVVIASPADLRLIVTAPLII--LFGFIILISHLAVSFAAGKLFRVDLEEI-LLASLANIGGPTSAPAMAIAKN 352 (384)
T ss_pred HHHHHHHHHHhccchhHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHhccCCccchhHHHhhcC
Confidence 455667888899999999887654443 2223334457777788889999888654 4556677788887777777766
Q ss_pred cCCCChhhHHHHHHHHHHHHHHH
Q 038780 306 KQVRNTGEFTVAVVLILILASII 328 (694)
Q Consensus 306 ~~~i~~~~f~~lv~~~lltt~i~ 328 (694)
..++ ..-++|.++-..++
T Consensus 353 r~lv-----~~gvlmg~lG~~iG 370 (384)
T COG5505 353 RELV-----APGVLMGTLGYLIG 370 (384)
T ss_pred chhc-----chHHHHHHHHHHHH
Confidence 5444 34445555554444
No 205
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=22.01 E-value=6.1e+02 Score=24.12 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=50.2
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCCC
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHPK 439 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 439 (694)
||+|++..-.+.-.|+.++..+. +..+..+.++|+-. ..+ ..++.-.+..+++.++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~--~~~~~~~~~~~vdh------------~~~-------~~s~~~~~~v~~~~~~~-- 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELR--RRNGIKLIAVHVDH------------GLR-------EESDEEAEFVEEICEQL-- 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHH--TTTTTEEEEEEEE-------------STS-------CCHHHHHHHHHHHHHHT--
T ss_pred CEEEEEcCCHHHHHHHHHHHHHH--HhcCCCeEEEEEec------------CCC-------cccchhHHHHHHHHHhc--
Confidence 68899988888888888888888 44566899999832 110 11233334455565542
Q ss_pred ceEEEEEEEEc----CCCCc--------hHHHHHHHHhcCccEEEecCcc
Q 038780 440 FVQVQVFSAIS----PPKVM--------HEDICWLAFDKSISLIILPCHR 477 (694)
Q Consensus 440 ~v~v~~~t~vs----~~~~m--------~~~I~~~A~e~~~~lIilp~h~ 477 (694)
+++.... .+. +..+. ++-+.+.|++++++.|++|=|.
T Consensus 58 ~i~~~~~-~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 58 GIPLYIV-RIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp T-EEEEE-E--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred CCceEEE-EeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 3443322 121 11222 2334457888899999999553
No 206
>PRK14561 hypothetical protein; Provisional
Probab=21.97 E-value=4.2e+02 Score=25.82 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=17.7
Q ss_pred EEEEeccCCcchHHHHHHHHHH
Q 038780 530 RLAVLYMGGEDDMEALAYARRM 551 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rm 551 (694)
+|++.+.||.|.--.+..+.+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~ 23 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF 23 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc
Confidence 5889999999998877766554
No 207
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.75 E-value=2.8e+02 Score=27.85 Aligned_cols=48 Identities=10% Similarity=-0.046 Sum_probs=34.2
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHHhhcc
Q 038780 25 SLITKLGKREWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATTMLTS 80 (694)
Q Consensus 25 ~~l~~~~~~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~ls~Ts 80 (694)
+.-++..++...+-++.++.|.+++ +++++++. +...+++|+.+....
T Consensus 18 ~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~--------~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 18 KMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGS--------WWYWLIIGILLGLLA 66 (224)
T ss_pred HHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHHHH
Confidence 4567777888778888889999888 77777663 455666776666543
No 208
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=21.73 E-value=8.9e+02 Score=24.91 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=59.8
Q ss_pred CceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhC
Q 038780 358 DLRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEH 437 (694)
Q Consensus 358 ~lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 437 (694)
..||+|++..-.+...++.++..+... ..+.++|+-. +-.. +++.-.+..+.+++..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~----~~~~a~~Vd~--~~~~-----------------~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR----IEVEAVHVDH--GLRG-----------------YSDQEAELVEKLCEKL 77 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC----ceEEEEEecC--CCCC-----------------ccchHHHHHHHHHHHh
Confidence 579999999999999999999998843 7788999833 2110 1223334445555542
Q ss_pred CCceEEEEEEEEcCCCCc----hHH---------HHHHHHhcCccEEEecCccc
Q 038780 438 PKFVQVQVFSAISPPKVM----HED---------ICWLAFDKSISLIILPCHRK 478 (694)
Q Consensus 438 ~~~v~v~~~t~vs~~~~m----~~~---------I~~~A~e~~~~lIilp~h~~ 478 (694)
.-...+..++..-....+ .+. ..+.|++..++.|+.|-|..
T Consensus 78 ~~~~~v~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~d 131 (298)
T COG0037 78 GIPLIVERVTDDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLD 131 (298)
T ss_pred CCceEEEEEEeeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcH
Confidence 223334444333222211 233 34567778999999997654
No 209
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=20.90 E-value=4.5e+02 Score=23.38 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=48.8
Q ss_pred cEEEEEEeeccCCCCcchhhccccccCCCC-CCC-CchhHHHHHHHHhHhCCCceEEEEEEEEcCCCCchHHHHHHHHhc
Q 038780 389 LSVYGLYLEPLTGGSTPLLINHQLGQKYSK-SGA-HRQPIIHVFRYFKAEHPKFVQVQVFSAISPPKVMHEDICWLAFDK 466 (694)
Q Consensus 389 ~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~ 466 (694)
-.|.-+|++|.++-. +-+..++.--..-. -.. ..+...+-++...+....++-+..--.+ +.+-+++.+.|+++
T Consensus 23 r~V~~v~v~e~~d~~-~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~---~~iP~~~i~~A~~~ 98 (123)
T PF07905_consen 23 RPVRWVHVMEAPDPS-DWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYL---DEIPEEIIELADEL 98 (123)
T ss_pred CcEEEEEEeecCCHH-HhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCcc---ccCCHHHHHHHHHc
Confidence 458889999987522 22212221000000 011 1123445566665543345555443222 68889999999999
Q ss_pred CccEEEecCccc
Q 038780 467 SISLIILPCHRK 478 (694)
Q Consensus 467 ~~~lIilp~h~~ 478 (694)
+.-++.+||+-+
T Consensus 99 ~lPli~ip~~~~ 110 (123)
T PF07905_consen 99 GLPLIEIPWEVP 110 (123)
T ss_pred CCCEEEeCCCCC
Confidence 999999998544
Done!