Query 038780
Match_columns 694
No_of_seqs 280 out of 1704
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 04:40:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 7E-26 2.4E-30 240.5 7.8 299 4-336 61-384 (388)
2 3mt0_A Uncharacterized protein 99.8 1.6E-17 5.5E-22 173.1 21.4 258 359-677 8-279 (290)
3 3olq_A Universal stress protei 99.7 5.7E-17 1.9E-21 171.1 15.2 277 359-677 8-308 (319)
4 3loq_A Universal stress protei 99.7 5.6E-17 1.9E-21 169.3 12.8 266 359-676 23-292 (294)
5 3cis_A Uncharacterized protein 99.7 8E-16 2.8E-20 161.7 18.1 275 358-675 19-307 (309)
6 3ab8_A Putative uncharacterize 99.6 2.4E-15 8.3E-20 154.5 17.8 257 360-673 2-268 (268)
7 3fdx_A Putative filament prote 99.1 1.5E-10 5E-15 106.5 9.2 138 359-510 2-142 (143)
8 3dlo_A Universal stress protei 99.1 3.2E-10 1.1E-14 106.4 10.0 129 359-510 25-154 (155)
9 3hgm_A Universal stress protei 99.1 1.6E-10 5.5E-15 106.7 6.6 137 360-509 4-146 (147)
10 3s3t_A Nucleotide-binding prot 99.0 5E-10 1.7E-14 103.3 9.9 136 359-510 6-145 (146)
11 1mjh_A Protein (ATP-binding do 99.0 1.6E-09 5.6E-14 101.8 13.4 140 359-511 6-158 (162)
12 3tnj_A Universal stress protei 99.0 4.1E-10 1.4E-14 104.5 8.3 140 359-512 7-147 (150)
13 2dum_A Hypothetical protein PH 99.0 6.8E-10 2.3E-14 105.5 9.3 143 359-514 6-158 (170)
14 1tq8_A Hypothetical protein RV 99.0 1.1E-09 3.9E-14 103.5 10.2 139 358-512 17-158 (163)
15 2z08_A Universal stress protei 99.0 7.6E-10 2.6E-14 101.1 8.0 132 360-510 4-136 (137)
16 2gm3_A Unknown protein; AT3G01 99.0 2.5E-09 8.5E-14 102.1 10.9 145 359-514 6-165 (175)
17 3idf_A USP-like protein; unive 98.9 8.8E-10 3E-14 100.7 7.1 132 360-510 3-137 (138)
18 3fg9_A Protein of universal st 98.9 6.9E-10 2.4E-14 103.8 6.1 136 359-510 16-155 (156)
19 1jmv_A USPA, universal stress 98.8 6E-09 2.1E-13 95.4 8.9 134 360-513 4-139 (141)
20 1q77_A Hypothetical protein AQ 98.7 4E-08 1.4E-12 89.6 10.0 129 359-510 5-137 (138)
21 3mt0_A Uncharacterized protein 98.5 1E-07 3.4E-12 98.7 7.1 135 358-513 134-277 (290)
22 3loq_A Universal stress protei 98.5 3.1E-07 1.1E-11 95.1 8.9 121 357-511 169-289 (294)
23 3olq_A Universal stress protei 98.4 3E-07 1E-11 96.2 7.4 145 358-514 156-307 (319)
24 3s3t_A Nucleotide-binding prot 98.3 3.9E-06 1.3E-10 76.8 11.9 127 528-673 5-146 (146)
25 3idf_A USP-like protein; unive 98.3 3E-06 1E-10 76.9 10.1 125 529-672 2-137 (138)
26 3tnj_A Universal stress protei 98.2 2.8E-06 9.7E-11 78.2 9.3 126 528-675 6-148 (150)
27 3hgm_A Universal stress protei 98.2 3.8E-06 1.3E-10 76.9 9.2 125 529-672 3-147 (147)
28 2z08_A Universal stress protei 98.2 6.4E-06 2.2E-10 74.6 10.0 124 529-673 3-137 (137)
29 3cis_A Uncharacterized protein 98.2 2.8E-06 9.7E-11 88.5 8.6 133 359-511 172-305 (309)
30 1jmv_A USPA, universal stress 98.2 1.2E-05 4.2E-10 73.0 11.5 123 529-675 3-139 (141)
31 3fdx_A Putative filament prote 98.2 6.6E-06 2.3E-10 75.0 9.6 125 529-673 2-143 (143)
32 1tq8_A Hypothetical protein RV 98.1 7.4E-06 2.5E-10 77.0 9.2 128 528-675 17-159 (163)
33 3dlo_A Universal stress protei 98.1 4.4E-06 1.5E-10 77.8 7.5 128 528-673 24-155 (155)
34 2dum_A Hypothetical protein PH 98.1 1.4E-05 4.8E-10 75.3 10.8 132 528-676 5-158 (170)
35 1mjh_A Protein (ATP-binding do 98.1 1.1E-05 3.8E-10 75.3 9.7 129 528-675 5-160 (162)
36 3fg9_A Protein of universal st 98.1 1.1E-05 3.6E-10 75.0 9.3 128 528-673 15-156 (156)
37 3ab8_A Putative uncharacterize 97.9 2.2E-05 7.6E-10 79.7 7.8 113 359-510 155-267 (268)
38 1q77_A Hypothetical protein AQ 97.8 5.3E-05 1.8E-09 68.5 9.0 39 528-566 4-43 (138)
39 2gm3_A Unknown protein; AT3G01 97.7 0.00019 6.5E-09 67.7 11.7 130 528-676 5-165 (175)
40 3zux_A Transporter, ASBTNM; tr 97.4 0.077 2.6E-06 55.4 26.4 71 263-336 240-311 (332)
41 3g40_A Na-K-CL cotransporter; 96.4 0.09 3.1E-06 52.9 15.9 222 356-632 18-254 (294)
42 1zun_A Sulfate adenylyltransfe 71.5 5.2 0.00018 41.3 6.1 55 530-591 48-102 (325)
43 1o97_C Electron transferring f 59.6 9.2 0.00031 38.1 5.0 95 536-645 34-140 (264)
44 1efp_B ETF, protein (electron 58.4 15 0.00051 36.3 6.3 92 538-645 36-141 (252)
45 1efv_B Electron transfer flavo 58.0 15 0.0005 36.5 6.1 93 537-645 38-144 (255)
46 2wsi_A FAD synthetase; transfe 54.1 26 0.00088 35.6 7.5 92 530-634 55-169 (306)
47 1sur_A PAPS reductase; assimil 54.0 68 0.0023 30.2 10.2 51 530-591 46-96 (215)
48 3fwk_A FMN adenylyltransferase 51.0 15 0.00051 37.4 4.9 91 530-633 60-171 (308)
49 3zux_A Transporter, ASBTNM; tr 49.1 1.1E+02 0.0037 31.2 11.4 93 200-300 28-123 (332)
50 3a2k_A TRNA(Ile)-lysidine synt 48.4 33 0.0011 37.1 7.6 59 529-591 19-77 (464)
51 1nu0_A Hypothetical protein YQ 43.3 43 0.0015 29.6 6.2 60 453-514 39-98 (138)
52 1ni5_A Putative cell cycle pro 41.3 40 0.0014 36.0 6.8 95 529-632 14-118 (433)
53 2l0e_A Sodium/hydrogen exchang 41.2 5.2 0.00018 26.2 -0.2 28 66-93 3-30 (33)
54 1wy5_A TILS, hypothetical UPF0 38.6 37 0.0013 34.5 5.8 58 529-591 25-83 (317)
55 2k3c_A TMIX peptide; membrane 34.7 1.6 5.4E-05 28.7 -3.5 27 183-209 5-31 (33)
56 2oq2_A Phosphoadenosine phosph 32.8 36 0.0012 33.6 4.4 54 530-591 43-96 (261)
57 1iv0_A Hypothetical protein; r 32.6 84 0.0029 25.9 5.9 57 453-513 37-93 (98)
58 2k4m_A TR8_protein, UPF0146 pr 32.4 44 0.0015 30.0 4.4 36 445-480 92-127 (153)
59 3gr7_A NADPH dehydrogenase; fl 28.9 2.5E+02 0.0087 28.5 10.3 122 483-632 188-310 (340)
60 2l69_A Rossmann 2X3 fold prote 28.8 85 0.0029 25.4 5.0 62 539-618 58-119 (134)
61 2l82_A Designed protein OR32; 28.2 2.6E+02 0.0089 23.2 9.4 83 530-633 3-88 (162)
62 1vhx_A Putative holliday junct 27.9 1.5E+02 0.0052 26.3 7.3 61 452-514 40-100 (150)
63 3kru_A NADH:flavin oxidoreduct 25.2 2.9E+02 0.01 28.2 9.9 122 483-633 187-311 (343)
64 4hqo_A Sporozoite surface prot 21.2 3.5E+02 0.012 26.1 9.3 80 528-622 126-205 (266)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.92 E-value=7e-26 Score=240.55 Aligned_cols=299 Identities=15% Similarity=0.052 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHhhccChHHH----Hhcch--hHHHHHHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHHHHH
Q 038780 4 YSLTIFGYIFFMFLIGVKMDLSLI----TKLGK--REWCISLSLMFNLLLVG-MICQTISQILEPQEYLDDWIDLFTATT 76 (694)
Q Consensus 4 ~~la~~G~i~llF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~~p~~~g-~~~~~l~~~~~~~~~~~~~~l~ig~~l 76 (694)
.-+.+-.+.++||.+|+|+|.+.+ ++.+| .+...++.|+++|++++ .+ .. ....+.....+.
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~~----~~-------~~~~~~~gw~ip 129 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAF----NY-------ADPITREGWAIP 129 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGGG----CC-------SSTTHHHHTSSS
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH----hc-------CChhhhhhhHHH
Confidence 345677899999999999999987 55444 37888999999999876 32 11 122344555556
Q ss_pred hhccHHHHHHHHHhcccc-cChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 038780 77 MLTSFPVVACFLMHLKII-NSELGHFALSTALLCDLQSVILVNSYNYMDIITNASIRVGIKAMALSLSLIVFVTIVLRRL 155 (694)
Q Consensus 77 s~Ts~~vv~~iL~el~~~-~s~~g~lals~a~i~Di~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~ 155 (694)
+.|+.+....++..++.. .+..++.+++.|++||+.+|++++++++ +..+ ..+.. ..+++++..
T Consensus 130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt----~~~~---~~~l~-~~~~~~~~~------- 194 (388)
T 1zcd_A 130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT----NDLS---MASLG-VAAVAIAVL------- 194 (388)
T ss_dssp SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC----CCCC---HHHHH-HHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc----CCcc---HHHHH-HHHHHHHHH-------
Confidence 678888888999998764 4556699999999999999999998864 1112 11211 122222212
Q ss_pred HHHHHHHCCCCCCCCchHHHHHHHHHHHHHHHHHHhchhhhHHHHhhhhcccCCC----CchhHHHHHHhhhhhhhhhhH
Q 038780 156 MFWIIRRTPEGKPVKSSYTIFIVCLVIVVAVVGETVGIQYFYGPFIFGLTVPTGP----PLASTLVEKLDTIVTGLFLPL 231 (694)
Q Consensus 156 ~~~~~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~g~~~~lGaf~~GL~i~~~~----p~~~~l~~kl~~~~~~~f~Pl 231 (694)
+..+|.. ++....+.++ . +++.+.++..|+|+++|+|++|+++|..+ +..++++++++++++.+++|+
T Consensus 195 --~~l~r~~----v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPl 266 (388)
T 1zcd_A 195 --AVLNLCG----ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPL 266 (388)
T ss_dssp --HHHHHTT----CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHH
T ss_pred --HHHHHhc----chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2223322 1223333333 2 25567779999999999999999999863 357889999999999999999
Q ss_pred H-HhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHhh----------CCChhHHHHHHHHhhhhhhhhhhhh
Q 038780 232 M-ATFCGLKSNLRDLSKGLSYPLVFGMTIGLFFKLIAVYLPAVWF----------NTHSTDAAALSLILTVKGIVELGTF 300 (694)
Q Consensus 232 F-F~~~Gl~~dl~~l~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lg~~m~~kG~~~li~~ 300 (694)
| |+..|+++|...+..........+++..+++|.+|++..++.. |++|+|+..+|.+++.+++++++++
T Consensus 267 FaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia 346 (388)
T 1zcd_A 267 FAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIA 346 (388)
T ss_dssp HHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHH
T ss_pred HHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHH
Confidence 9 9999999997432111011122344555889999855555554 9999999999999999999999999
Q ss_pred ccccccCC--CChhhHHHHHHHHHHHHHHHHHHHHhhc
Q 038780 301 GTNFNKQV--RNTGEFTVAVVLILILASIIPIIVRKLH 336 (694)
Q Consensus 301 ~~~~~~~~--i~~~~f~~lv~~~lltt~i~~~l~~~l~ 336 (694)
+++++.+. +.++.+..++++++++++++|.++++.+
T Consensus 347 ~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 347 SLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998876 3567799999999999999988887665
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.77 E-value=1.6e-17 Score=173.13 Aligned_cols=258 Identities=15% Similarity=0.073 Sum_probs=173.3
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCC
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHP 438 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 438 (694)
-|||+|++.+++...+++.+..++.. ....++++|+++ + + ..++.++.+.+..+.
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~-~----------~----------~~~~~l~~~~~~~~~-- 62 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGV--TQSHLHLLVCEK-R----------R----------DHSAALNDLAQELRE-- 62 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHH--HCCEEEEEEECS-S----------S----------CCHHHHHHHHHHHHH--
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHh--cCCeEEEEEeeC-c----------H----------HHHHHHHHHHHHHhh--
Confidence 48999999999999999999999843 446899999987 1 0 112333333333222
Q ss_pred CceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCCCCC
Q 038780 439 KFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIHG 518 (694)
Q Consensus 439 ~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~~ 518 (694)
.+++++...... .+..+.|++.|+++++|+||||.|++...++.+ ++++.+++++++||||.++.....
T Consensus 63 ~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlvv~~~~~--- 131 (290)
T 3mt0_A 63 EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLMTKTARP--- 131 (290)
T ss_dssp TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEEECCCSC---
T ss_pred CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcc------cCHHHHHHHhcCCCCEEEecCCCC---
Confidence 456777665543 679999999999999999999999876655443 344889999999999877742221
Q ss_pred CCccccCCceeEEEEeccCCcc-------hHHHHHHHHHHHhCCCeEEEEEEEeecCCcCc-------cccccchHHHHH
Q 038780 519 PSSIFVAPFVYRLAVLYMGGED-------DMEALAYARRMARSSRVHLTVIHFTLSKESGY-------ARWTNTIDDEFL 584 (694)
Q Consensus 519 ~~~~~~~~~~~~I~~~f~gg~d-------dreAl~~a~rma~~~~v~ltv~~~~~~~~~~~-------~~~e~~~d~~~i 584 (694)
. ..++|++++.|+++ .+.|+++|.++|+..+++++++++.++..... .+..++..++.+
T Consensus 132 ------~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 204 (290)
T 3mt0_A 132 ------W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREAC 204 (290)
T ss_dssp ------S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHH
T ss_pred ------C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHH
Confidence 1 25789999999998 79999999999999999999999986522110 000112233455
Q ss_pred HHhhhcccccCCCcEEEEEEEecCchHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCC
Q 038780 585 NGLKKNDEILGNLNIIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDIT 664 (694)
Q Consensus 585 ~~~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~ 664 (694)
+++..+... ........+- +-++++.+..++ .++||+++|+++.. |+.+| =+|-..+-+...
T Consensus 205 ~~~~~~~g~-~~~~~~v~~g--~~~~~I~~~a~~--~~~dLiVmG~~g~~------~~~~~----~~Gsv~~~vl~~--- 266 (290)
T 3mt0_A 205 RTFQAEYGF-SDEQLHIEEG--PADVLIPRTAQK--LDAVVTVIGTVART------GLSGA----LIGNTAEVVLDT--- 266 (290)
T ss_dssp HHHHHHHTC-CTTTEEEEES--CHHHHHHHHHHH--HTCSEEEEECCSSC------CGGGC----CSCHHHHHHHTT---
T ss_pred HHHHHHcCC-CcceEEEecc--CHHHHHHHHHHh--cCCCEEEECCCCCc------CCcce----ecchHHHHHHhc---
Confidence 555544310 0112222221 112345555555 67999999998742 33333 367777777764
Q ss_pred CceeEEEEeeecc
Q 038780 665 ASISILVIQQQII 677 (694)
Q Consensus 665 ~~~SvLvvqq~~~ 677 (694)
++.+||||.++..
T Consensus 267 ~~~pVLvv~~~~~ 279 (290)
T 3mt0_A 267 LESDVLVLKPDDI 279 (290)
T ss_dssp CSSEEEEECCHHH
T ss_pred CCCCEEEECCCCC
Confidence 6789999986543
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.71 E-value=5.7e-17 Score=171.12 Aligned_cols=277 Identities=12% Similarity=0.067 Sum_probs=172.6
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccC-CCCCCCCchhHHHHHHHHhHhC
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQK-YSKSGAHRQPIIHVFRYFKAEH 437 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~ 437 (694)
-|||||++.+++...+++.+..++. .....++++|+++......+.....+.... ........++.++.+....+.
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 84 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQ--RNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLE- 84 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHH--HHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEECCCcccHHHHHHHHHHHH--HcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 4899999999999999999999984 345789999998632110000000000000 000000112233322222222
Q ss_pred CCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCCCC
Q 038780 438 PKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIH 517 (694)
Q Consensus 438 ~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~ 517 (694)
.+++++..+... .+..+.|++.|+++++||||||.|++...++.+ ++++.++|++++||||.++.++..
T Consensus 85 -~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~~~~-- 153 (319)
T 3olq_A 85 -AGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWMVKDKEW-- 153 (319)
T ss_dssp -TTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEEEESSCC--
T ss_pred -cCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccc------ccccHHHHHhcCCCCEEEecCccc--
Confidence 467777766634 789999999999999999999999876655443 344789999999999988754431
Q ss_pred CCCccccCCceeEEEEeccCCcc-------hHHHHHHHHHHHhCC--CeEEEEEEEeecCCcCc----cc-----c---c
Q 038780 518 GPSSIFVAPFVYRLAVLYMGGED-------DMEALAYARRMARSS--RVHLTVIHFTLSKESGY----AR-----W---T 576 (694)
Q Consensus 518 ~~~~~~~~~~~~~I~~~f~gg~d-------dreAl~~a~rma~~~--~v~ltv~~~~~~~~~~~----~~-----~---e 576 (694)
. ...+|++++.|+++ .+.|+++|.++|+.. +++++++++.++..... .. . .
T Consensus 154 --~------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 225 (319)
T 3olq_A 154 --P------EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNAL 225 (319)
T ss_dssp --C------TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHH
T ss_pred --c------cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHH
Confidence 1 25689999999985 489999999999987 99999999986532110 00 0 0
Q ss_pred cchHHHHHHHhhhcccccCCCc--EEEEEEEecCchHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchh
Q 038780 577 NTIDDEFLNGLKKNDEILGNLN--IIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPI 654 (694)
Q Consensus 577 ~~~d~~~i~~~~~~~~~~~~~~--v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~i 654 (694)
++..++.++++..+.. ... ....+- +-.+.+.+..++ .++||+++|+++.. |+.+| =+|-.
T Consensus 226 ~~~~~~~l~~~~~~~~---~~~~~~~v~~g--~~~~~I~~~a~~--~~~dLiV~G~~g~~------~~~~~----~~Gsv 288 (319)
T 3olq_A 226 RGQHLIAMKELRQKFS---IPEEKTHVKEG--LPEQVIPQVCEE--LNAGIVVLGILGRT------GLSAA----FLGNT 288 (319)
T ss_dssp HHHHHHHHHHHHHHTT---CCGGGEEEEES--CHHHHHHHHHHH--TTEEEEEEECCSCC------STHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHhC---CCcccEEEecC--CcHHHHHHHHHH--hCCCEEEEeccCcc------CCccc----cccHH
Confidence 1112345555554432 111 222111 112334444444 57999999998642 22222 36666
Q ss_pred hhhhhcCCCCCceeEEEEeeecc
Q 038780 655 GDLFASSDITASISILVIQQQII 677 (694)
Q Consensus 655 gd~las~~~~~~~SvLvvqq~~~ 677 (694)
.+-+... ++.+||||..+..
T Consensus 289 ~~~vl~~---~~~pVLvv~~~~~ 308 (319)
T 3olq_A 289 AEQLIDH---IKCDLLAIKPDGF 308 (319)
T ss_dssp HHHHHTT---CCSEEEEECCTTC
T ss_pred HHHHHhh---CCCCEEEECCCCC
Confidence 7766654 6789999987764
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.70 E-value=5.6e-17 Score=169.32 Aligned_cols=266 Identities=14% Similarity=0.114 Sum_probs=170.8
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCC
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHP 438 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 438 (694)
-|||||++.+++...+++.+..++. .....++++|+++.+....... ...............++.++.+.+..++
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~--~~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 97 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKK--VGVEEIGVLFVINLTKLSTVSG-GIDIDHYIDEMSEKAEEVLPEVAQKIEA-- 97 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHH--TTCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEecCcccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3899999999999999999999984 4558899999998654211000 0000000000011234455555444443
Q ss_pred CceEEEE-EEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCCCCC
Q 038780 439 KFVQVQV-FSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIH 517 (694)
Q Consensus 439 ~~v~v~~-~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~ 517 (694)
.+++++. .+. ...+..+.| .|+++++|+||||.|++....+ ..++++.++|++++||||.++.+...
T Consensus 98 ~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlvv~~~~~-- 165 (294)
T 3loq_A 98 AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFKK------ILLGSVSEGVLHDSKVPVYIFKHDMV-- 165 (294)
T ss_dssp TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHHH------HHHCCHHHHHHHHCSSCEEEECCCTT--
T ss_pred cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccccc------eeeccHHHHHHhcCCCCEEEecCccc--
Confidence 4577765 333 126888999 9999999999999987654322 23556889999999999877744331
Q ss_pred CCCccccCCceeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCC
Q 038780 518 GPSSIFVAPFVYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNL 597 (694)
Q Consensus 518 ~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~ 597 (694)
+ ....++|++++.|++.+++|+++|.++|+..+++++++++.++.. .++..++..+.++... .
T Consensus 166 -~-----~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~~~~~~l~~~~-----~ 228 (294)
T 3loq_A 166 -V-----NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLRVMEEVIGAEG-----I 228 (294)
T ss_dssp -T-----TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHHHHHHHHHHTT-----C
T ss_pred -c-----CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHHHHHHHHHHcC-----C
Confidence 0 122578999999999999999999999999999999999976532 1222333444443321 1
Q ss_pred cEEEEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEee
Q 038780 598 NIIYKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQQ 674 (694)
Q Consensus 598 ~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvqq 674 (694)
.+.+ .+..| +++.+.+++ .++||+++|+++.. ++.+| -+|-..+-+... ++.+||||.+
T Consensus 229 ~~~~---~~~~g~~~~~I~~~a~~--~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pvLvv~~ 290 (294)
T 3loq_A 229 EVHV---HIESGTPHKAILAKREE--INATTIFMGSRGAG------SVMTM----ILGSTSESVIRR---SPVPVFVCKR 290 (294)
T ss_dssp CEEE---EEECSCHHHHHHHHHHH--TTCSEEEEECCCCS------CHHHH----HHHCHHHHHHHH---CSSCEEEECS
T ss_pred cEEE---EEecCCHHHHHHHHHHh--cCcCEEEEeCCCCC------Cccce----eeCcHHHHHHhc---CCCCEEEECC
Confidence 2332 22334 233333333 57999999998642 22222 256666666653 6779999987
Q ss_pred ec
Q 038780 675 QI 676 (694)
Q Consensus 675 ~~ 676 (694)
..
T Consensus 291 ~~ 292 (294)
T 3loq_A 291 GD 292 (294)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.67 E-value=8e-16 Score=161.75 Aligned_cols=275 Identities=18% Similarity=0.156 Sum_probs=171.0
Q ss_pred CceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCc-ch-hhccccccCCCCCCCCchhHHHHHHHHhH
Q 038780 358 DLRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGST-PL-LINHQLGQKYSKSGAHRQPIIHVFRYFKA 435 (694)
Q Consensus 358 ~lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 435 (694)
.-|||||++.+++...+++.+..++.. ....++++|+++ +.... +. ....+.. .......++.++.+.+..+
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 92 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAEL--RKIPLTLVHAVS-PEVATWLEVPLPPGVL---RWQQDHGRHLIDDALKVVE 92 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHH--HTCCEEEEEECC-CCCCCTTCCCCCHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHh--cCCcEEEEEEec-CcccccccCCCCchhh---HHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999888843 346799999987 22110 00 0000000 0000122334433333322
Q ss_pred hC---CCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEec
Q 038780 436 EH---PKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILID 512 (694)
Q Consensus 436 ~~---~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvd 512 (694)
+. ..+++++..+.. .+..+.|++.|+ ++|+||||.|++.+..+.+ ++++.++|++++||||.++..
T Consensus 93 ~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlvv~~ 161 (309)
T 3cis_A 93 QASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCPVVIIHD 161 (309)
T ss_dssp HHCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSCEEEECT
T ss_pred HhcccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCccccccc------cCcHHHHHHHhCCCCEEEEcC
Confidence 21 125666665543 789999999996 8999999999876654443 345889999999999888754
Q ss_pred CCCCCCCCccccCCceeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcC---ccccc--cchHHHHHHHh
Q 038780 513 RSRIHGPSSIFVAPFVYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESG---YARWT--NTIDDEFLNGL 587 (694)
Q Consensus 513 r~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~---~~~~e--~~~d~~~i~~~ 587 (694)
+... . .....++|++++.|++.++.|+++|.++|+..+++++++++.++.... ...++ ++..++.+++.
T Consensus 162 ~~~~--~----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (309)
T 3cis_A 162 EDSV--M----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAER 235 (309)
T ss_dssp TCCC--S----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHH
T ss_pred Cccc--C----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHH
Confidence 4320 0 011246899999999999999999999999999999999997653211 00000 11122333333
Q ss_pred h----hcccccCCCcEEEEEEEecCchHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCC
Q 038780 588 K----KNDEILGNLNIIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDI 663 (694)
Q Consensus 588 ~----~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~ 663 (694)
. .+.. ...+.+ . +..|. ..+.|.+.+.++||+++|+++.. ++.+| =+|-..+-+...
T Consensus 236 ~~~~~~~~~---~~~~~~--~-~~~g~-~~~~I~~~a~~adliV~G~~~~~------~~~~~----l~Gsv~~~vl~~-- 296 (309)
T 3cis_A 236 LAGWQERYP---NVAITR--V-VVRDQ-PARQLVQRSEEAQLVVVGSRGRG------GYAGM----LVGSVGETVAQL-- 296 (309)
T ss_dssp HTTHHHHCT---TSCEEE--E-EESSC-HHHHHHHHHTTCSEEEEESSCSS------CCTTC----SSCHHHHHHHHH--
T ss_pred HHHHHhhCC---CCcEEE--E-EEcCC-HHHHHHHhhCCCCEEEECCCCCC------Ccccc----ccCcHHHHHHhc--
Confidence 2 2211 122332 2 34453 44445445558999999998642 22222 367777776654
Q ss_pred CCceeEEEEeee
Q 038780 664 TASISILVIQQQ 675 (694)
Q Consensus 664 ~~~~SvLvvqq~ 675 (694)
++.+||||.++
T Consensus 297 -~~~pVlvv~~~ 307 (309)
T 3cis_A 297 -ARTPVIVARES 307 (309)
T ss_dssp -CSSCEEEECC-
T ss_pred -CCCCEEEeCCC
Confidence 67899999754
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.65 E-value=2.4e-15 Score=154.52 Aligned_cols=257 Identities=17% Similarity=0.114 Sum_probs=163.4
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccc-cccC--------CCCCCCCchhHHHHH
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQ-LGQK--------YSKSGAHRQPIIHVF 430 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~-~~~~--------~~~~~~~~~~i~~af 430 (694)
|||+|++.+++...+++.+..++.. ....++++|+++......+...... .... ........++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYK--LSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHH--HTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHH--hCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999998843 3467999999874321100000000 0000 000001123344444
Q ss_pred HHHhHhCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCcccc-CCCCccccchhHHHHHHHHHhhhCCCcEEE
Q 038780 431 RYFKAEHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKW-NAKGELISDSQVLRNLNSKVLHKAPSSVGI 509 (694)
Q Consensus 431 ~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~-~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgI 509 (694)
.+..++ .+++++..+.. .+..+.|++. ++++|+||||.|++. ...+.+ +|++.++|++++||||.+
T Consensus 80 ~~~~~~--~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PVlv 146 (268)
T 3ab8_A 80 RQSALA--AGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPVLL 146 (268)
T ss_dssp HHHHHH--TTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCEEE
T ss_pred HHHHHh--CCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccccccc------cchhHHHHHHhCCCCEEE
Confidence 444333 34666666554 6889999998 899999999999876 554443 345889999999999877
Q ss_pred EecCCCCCCCCccccCCceeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhh
Q 038780 510 LIDRSRIHGPSSIFVAPFVYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKK 589 (694)
Q Consensus 510 lvdr~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~ 589 (694)
+..+.. ..++|++++.|+++++.|+++|.++|+..+++++++++.++.+ ..++..++..+.+..
T Consensus 147 v~~~~~-----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~-----~~~~~l~~~~~~l~~ 210 (268)
T 3ab8_A 147 APGEPV-----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA-----RAEAWALEAEAYLRD 210 (268)
T ss_dssp ECSSCC-----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH-----HHHHHHHHHHHHHHH
T ss_pred ECCCCC-----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH-----HHHHHHHHHHHHHHH
Confidence 633221 2468999999999999999999999999999999999875421 111222233333332
Q ss_pred cccccCCCcEEEEEEEecCchHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeE
Q 038780 590 NDEILGNLNIIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISI 669 (694)
Q Consensus 590 ~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~Sv 669 (694)
. ...+.+ . +.+|. ..+.|.+...++||+++|+ |+.+| =+|-..+-+... ++.+|
T Consensus 211 ~-----~~~~~~--~-~~~g~-~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~---~~~pv 264 (268)
T 3ab8_A 211 H-----GVEASA--L-VLGGD-AADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN---AQGPV 264 (268)
T ss_dssp T-----TCCEEE--E-EECSC-HHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH---CSSCE
T ss_pred c-----CCceEE--E-EeCCC-hHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc---CCCCE
Confidence 2 112333 2 23453 4444555554559999999 22222 356666666654 67789
Q ss_pred EEEe
Q 038780 670 LVIQ 673 (694)
Q Consensus 670 Lvvq 673 (694)
|||.
T Consensus 265 lvv~ 268 (268)
T 3ab8_A 265 LTAR 268 (268)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9873
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.12 E-value=1.5e-10 Score=106.54 Aligned_cols=138 Identities=18% Similarity=0.065 Sum_probs=92.9
Q ss_pred ceEEEEeecCCC--hHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHh
Q 038780 359 LRILVCTHRQDD--ALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAE 436 (694)
Q Consensus 359 lrILv~v~~~~~--~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 436 (694)
-|||+|++.+++ ...+++.+..++. .....++++|+++.+............ .........++..+.++++.++
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 77 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEAR--IDDAEVHFLTVIPSLPYYASLGMAYTA--ELPGMDELREGSETQLKEIAKK 77 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHH--HHTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHH--hcCCeEEEEEEecCCcccccccccccc--hhhhHHHHHHHHHHHHHHHHHH
Confidence 389999999999 9999999988883 345789999999864322111000000 0000111234566677777665
Q ss_pred CC-CceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 437 HP-KFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 437 ~~-~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
.. .++.++..+.. .+..+.|++.|+++++|+||||.|+ .+..+.+ +|++.++|++++||||.++
T Consensus 78 ~~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~------~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 78 FSIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHR-PDITTYL------LGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp SCCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCS------SCHHHHHHHHHCSSEEEEE
T ss_pred cCCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCC-CCCeeee------eccHHHHHHHhCCCCEEEe
Confidence 43 34556666655 6899999999999999999999995 4443333 4558899999999998775
No 8
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.08 E-value=3.2e-10 Score=106.39 Aligned_cols=129 Identities=14% Similarity=0.087 Sum_probs=91.5
Q ss_pred ceEEEEeec-CCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhC
Q 038780 359 LRILVCTHR-QDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEH 437 (694)
Q Consensus 359 lrILv~v~~-~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 437 (694)
-|||+|++. +++...+++.+..++.. ....++++|+++.+..... +. ....++.++.+.+..++.
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~--~~a~l~llhV~~~~~~~~~-----~~-------~~~~~~~l~~~~~~~~~~ 90 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARL--RGVPVYVVHSLPGGGRTKD-----ED-------IIEAKETLSWAVSIIRKE 90 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHH--HTCCEEEEEEECCSTTSCH-----HH-------HHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEcCCCcccH-----HH-------HHHHHHHHHHHHHHHHhc
Confidence 489999999 99999999999999843 3467999999985432110 00 012344555555444442
Q ss_pred CCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 438 PKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 438 ~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
++.++..+.+ ...+..+.|++.|++.++|+||||.|++....+.+ ++++.++|++++||||.++
T Consensus 91 --g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 91 --GAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVICI 154 (155)
T ss_dssp --TCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEEE
T ss_pred --CCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE------eccHHHHHHHhCCCCEEEe
Confidence 3344433333 22689999999999999999999999887655443 3458899999999998775
No 9
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.05 E-value=1.6e-10 Score=106.69 Aligned_cols=137 Identities=15% Similarity=0.048 Sum_probs=91.5
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchh--hcccc-ccCCCCCCCCchhHHHHHHHHhHh
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLL--INHQL-GQKYSKSGAHRQPIIHVFRYFKAE 436 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~--~~~~~-~~~~~~~~~~~~~i~~af~~~~~~ 436 (694)
|||+|++.+++...+++.+..++.. ....++++|+++.+....... ..... ...........++.++.+.+..++
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQL--TGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHH--HCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999998843 357899999988532000000 00000 000000012234455555554443
Q ss_pred CCCceEE---EEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEE
Q 038780 437 HPKFVQV---QVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGI 509 (694)
Q Consensus 437 ~~~~v~v---~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgI 509 (694)
.++++ +..+.. .+..+.|++.|+++++|+||||.|++.+..+.+ ++++.++|++++||||.+
T Consensus 82 --~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 82 --LGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp --TTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEE
T ss_pred --cCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCcccccee------eccHHHHHHhhCCCCEEE
Confidence 23444 555454 689999999999999999999999877655443 345889999999999876
No 10
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.05 E-value=5e-10 Score=103.31 Aligned_cols=136 Identities=19% Similarity=0.147 Sum_probs=93.8
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchh--hccccccCCCCCCCCchhHHHHHHHHhHh
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLL--INHQLGQKYSKSGAHRQPIIHVFRYFKAE 436 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 436 (694)
-|||+|++.+++...+++.+..++.. ....++++|+++.+....... ...+.. .......++.++.+.+..++
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 80 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR--HQANLTALYVVDDSAYHTPALDPVLSELL---DAEAAHAKDAMRQRQQFVAT 80 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEECCCCCCGGGHHHHHHHH---HHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999998843 457899999998654322110 000000 00011233444444444332
Q ss_pred CCCce-EEEEEEEEcCCCCchHHHHH-HHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 437 HPKFV-QVQVFSAISPPKVMHEDICW-LAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 437 ~~~~v-~v~~~t~vs~~~~m~~~I~~-~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
.++ .++..+.. .+..+.|++ .|+++++|+||||.|++....+.+ ++++.++|++++||||.++
T Consensus 81 --~g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 81 --TSAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp --SSCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEEE
T ss_pred --cCCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE------EcchHHHHhccCCCCEEEe
Confidence 346 66666555 578999999 999999999999999887655443 4458899999999998775
No 11
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.05 E-value=1.6e-09 Score=101.85 Aligned_cols=140 Identities=19% Similarity=0.157 Sum_probs=92.1
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCC----CCcchh-----h-ccc---cccCCCCCCCCchh
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTG----GSTPLL-----I-NHQ---LGQKYSKSGAHRQP 425 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~----~~~~~~-----~-~~~---~~~~~~~~~~~~~~ 425 (694)
-|||+|++.+++...+++.+..++. .....++++|+++... ...+.. . ..+ ............++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKT--LKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCC--SSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHh--hcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 4899999999999999999999994 3457899999988430 000000 0 000 00000000011233
Q ss_pred HHHHHHHHhHhCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCC
Q 038780 426 IIHVFRYFKAEHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPS 505 (694)
Q Consensus 426 i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~Apc 505 (694)
.++.+.+..+. .+++++..+.. .+..+.|++.|+++++|+||||.|++.+..+.+ +|++.++|++++||
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------~GSv~~~vl~~~~~ 152 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSNK 152 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCCS
T ss_pred HHHHHHHHHHH--cCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceE------ecchHHHHHHhCCC
Confidence 34333333222 45677766554 689999999999999999999999887655443 44588999999999
Q ss_pred cEEEEe
Q 038780 506 SVGILI 511 (694)
Q Consensus 506 sVgIlv 511 (694)
||.|+.
T Consensus 153 pVlvv~ 158 (162)
T 1mjh_A 153 PVLVVK 158 (162)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 988873
No 12
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.03 E-value=4.1e-10 Score=104.47 Aligned_cols=140 Identities=11% Similarity=-0.007 Sum_probs=84.8
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCC
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHP 438 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 438 (694)
-|||||++.+++...+++.+..++.. ....++++|+++......+..................++..+.++++.++..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQ--IGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG 84 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 48999999999999999999999843 4578999999885322100000000000000000112334455555554422
Q ss_pred CceE-EEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEec
Q 038780 439 KFVQ-VQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILID 512 (694)
Q Consensus 439 ~~v~-v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvd 512 (694)
++ ++..+.. .+..+.|++.|+++++|+||||.|++.+.. .+- +++.++|++++||||.++..
T Consensus 85 --~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~------Gs~~~~vl~~~~~pVlvv~~ 147 (150)
T 3tnj_A 85 --IDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLL------GSTANSVLHYAKCDVLAVRL 147 (150)
T ss_dssp --CCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC---------C------CCHHHHHHHHCSSEEEEEEC
T ss_pred --CCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEe------cchHHHHHHhCCCCEEEEeC
Confidence 22 2333333 689999999999999999999999876654 433 34889999999999988754
No 13
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.01 E-value=6.8e-10 Score=105.46 Aligned_cols=143 Identities=18% Similarity=0.124 Sum_probs=90.7
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcch-hhc-------cccccCCCCCCCCchhHHHHH
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPL-LIN-------HQLGQKYSKSGAHRQPIIHVF 430 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~-~~~-------~~~~~~~~~~~~~~~~i~~af 430 (694)
-|||+|++.+++...+++.+..++. .....++++|+++........ ... .+..+.........++.++.+
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNK--MEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCC--SCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHH--hcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999994 345789999998743211000 000 000000000001123333333
Q ss_pred HHHhHhCCCceEEEE--EEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEE
Q 038780 431 RYFKAEHPKFVQVQV--FSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVG 508 (694)
Q Consensus 431 ~~~~~~~~~~v~v~~--~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVg 508 (694)
.+..+. .+++++. .+.. .+..+.|++.|+++++|+||||.|++....+.+ ++++.++|++++||||.
T Consensus 84 ~~~~~~--~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 84 AEEVKR--AFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEF------LGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHH--HTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTC------CCHHHHHHHHHCSSCEE
T ss_pred HHHHHH--cCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCccccce------echHHHHHHHhCCCCEE
Confidence 333222 2344444 4444 689999999999999999999999876554433 44588999999999998
Q ss_pred EEecCC
Q 038780 509 ILIDRS 514 (694)
Q Consensus 509 Ilvdr~ 514 (694)
|+..+.
T Consensus 153 vv~~~~ 158 (170)
T 2dum_A 153 IIKEVD 158 (170)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 875443
No 14
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.00 E-value=1.1e-09 Score=103.47 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=91.2
Q ss_pred CceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEE--EeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhH
Q 038780 358 DLRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGL--YLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKA 435 (694)
Q Consensus 358 ~lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~L--hlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 435 (694)
.-|||+|++.+++...+++.+..++. ....++++ |+++.+....+.....+. .........++.++.+.+..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~---~~a~l~ll~a~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG---ADAKLIIASAYLPQHEDARAADILKDES--YKVTGTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT---TTSEEEEEEECCC----------------------CCTHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC---CCCEEEEEEeeeccCcccccccccccHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999995 45789999 887743210110000000 000112234556655555444
Q ss_pred hCCCceE-EEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEec
Q 038780 436 EHPKFVQ-VQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILID 512 (694)
Q Consensus 436 ~~~~~v~-v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvd 512 (694)
+ .+++ ++..+.. .+..+.|++.|++.++|+||||.|++....+. .++++.++|++++||||.|+..
T Consensus 92 ~--~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~------~lGSva~~vl~~a~~PVlvV~~ 158 (163)
T 1tq8_A 92 N--AGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAGR------LLGSVPANVSRRAKVDVLIVHT 158 (163)
T ss_dssp T--TTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHH------HTBBHHHHHHHHTTCEEEEECC
T ss_pred H--cCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcccce------eeccHHHHHHHhCCCCEEEEeC
Confidence 3 3455 6665544 68899999999999999999999987654332 3455889999999999888743
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.98 E-value=7.6e-10 Score=101.08 Aligned_cols=132 Identities=14% Similarity=0.020 Sum_probs=87.0
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCCC
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHPK 439 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 439 (694)
|||+|++.+++...+++.+..++. .....++++|+++.... +.. .... ........++..+.++++.+. .
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~--~~~-~~~~---~~~~~~~~~~~~~~l~~~~~~--~ 73 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAE--AHGARLIVVHAYEPVPD--YLG-EPFF---EEALRRRLERAEGVLEEARAL--T 73 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEEECC--------------------CHHHHHHHHHHHHHHHH--H
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHh--hcCCEEEEEEEecCCCc--ccc-ccch---HHHHHHHHHHHHHHHHHHHHH--c
Confidence 899999999999999999998884 34578999999873211 110 0000 000001112333445454443 2
Q ss_pred ce-EEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 440 FV-QVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 440 ~v-~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
++ +++..+.. .+..+.|++.|+++++|+||||.|++.+..+.+ +|++.++|++++||||.++
T Consensus 74 g~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 74 GVPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp CCCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS------SCHHHHHHHHHCSSCEEEE
T ss_pred CCCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhh------hccHHHHHHhcCCCCEEEe
Confidence 23 33333343 689999999999999999999999876654443 4458899999999998775
No 16
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.96 E-value=2.5e-09 Score=102.07 Aligned_cols=145 Identities=8% Similarity=0.028 Sum_probs=88.1
Q ss_pred ceEEEEeecCC---------ChHHHHHHHHhhCCCC-CCCcEEEEEEeeccCCCCcc----hhh-ccccccCCCCCCCCc
Q 038780 359 LRILVCTHRQD---------DALAGIRLLEISHPMK-ESPLSVYGLYLEPLTGGSTP----LLI-NHQLGQKYSKSGAHR 423 (694)
Q Consensus 359 lrILv~v~~~~---------~~~~ll~l~~~~~~~~-~~p~~v~~Lhlvel~~~~~~----~~~-~~~~~~~~~~~~~~~ 423 (694)
-|||||++.++ ....+++.+..++..+ .....++++|+++....... ... ..+............
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 48999999999 8899999998865322 24578999999864321100 000 000000000000112
Q ss_pred hhHHHHHHHHhHhCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhC
Q 038780 424 QPIIHVFRYFKAEHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKA 503 (694)
Q Consensus 424 ~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~A 503 (694)
++.++.+.+..++ .+++++..+.. .+..+.|++.|+++++||||||.|++....+. .+|++.++|++++
T Consensus 86 ~~~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~------~~Gsva~~vl~~a 154 (175)
T 2gm3_A 86 LHLLEFFVNKCHE--IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKV------FVGTVSAFCVKHA 154 (175)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhhh------hcCchHHHHHhCC
Confidence 3344444333222 34666665554 68899999999999999999999987655443 3455899999999
Q ss_pred CCcEEEEecCC
Q 038780 504 PSSVGILIDRS 514 (694)
Q Consensus 504 pcsVgIlvdr~ 514 (694)
||||.|+..+.
T Consensus 155 ~~pVlvv~~~~ 165 (175)
T 2gm3_A 155 ECPVMTIKRNA 165 (175)
T ss_dssp SSCEEEEECCG
T ss_pred CCCEEEEcCCc
Confidence 99998886543
No 17
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.95 E-value=8.8e-10 Score=100.68 Aligned_cols=132 Identities=12% Similarity=0.015 Sum_probs=92.5
Q ss_pred eEEEEeecCCChHHHHHHHHhhC-CCCCCCcEEEEEEeeccCCCCcchh-hccccccCCCCCC-CCchhHHHHHHHHhHh
Q 038780 360 RILVCTHRQDDALAGIRLLEISH-PMKESPLSVYGLYLEPLTGGSTPLL-INHQLGQKYSKSG-AHRQPIIHVFRYFKAE 436 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~-~~~~~p~~v~~Lhlvel~~~~~~~~-~~~~~~~~~~~~~-~~~~~i~~af~~~~~~ 436 (694)
|||+|++.+++...+++.+..++ .. ....++++|+++.+....... ...+.. .... ...++.++.+.+..++
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 77 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEAVLAAYDEI---EMKEEEKAKLLTQKFSTFFTE 77 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCcccccccCcHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998 44 347899999998654321100 000000 0000 1234455555444443
Q ss_pred CCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 437 HPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 437 ~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
.+++++..+.. .+..+.|++.|+ ++|+||||.|++....+.+ ++ +.++|++++||||.++
T Consensus 78 --~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs------~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 78 --KGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-AS------HQDDFIQKAPIPVLIV 137 (138)
T ss_dssp --TTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CC------TTCHHHHHCSSCEEEE
T ss_pred --CCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-Cc------HHHHHHhcCCCCEEEe
Confidence 45666666655 689999999999 9999999999987766655 55 6789999999998775
No 18
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.94 E-value=6.9e-10 Score=103.81 Aligned_cols=136 Identities=11% Similarity=0.050 Sum_probs=90.6
Q ss_pred ceEEEEee--cCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHh
Q 038780 359 LRILVCTH--RQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAE 436 (694)
Q Consensus 359 lrILv~v~--~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 436 (694)
-|||+|++ .+++...+++.+..++.. ....++++|+++.+..........+. ........++.++.+.+..++
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 90 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHD--YDVPLGICSVLESEDINIFDSLTPSK---IQAKRKHVEDVVAEYVQLAEQ 90 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHH--HTCCEEEEEEECCCCTTCCCSSHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHh--cCCEEEEEEEEeCCCccccccCCHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 48999999 999999999999988843 34679999999864321100000000 000011234444444443333
Q ss_pred CCCce-EEEEEEEEcCCCCchHHHHHH-HHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 437 HPKFV-QVQVFSAISPPKVMHEDICWL-AFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 437 ~~~~v-~v~~~t~vs~~~~m~~~I~~~-A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
.++ .++..+..+ .+..+.|++. |+++++|+||||.|++.+.+ .+- |++.++|++++||||.++
T Consensus 91 --~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~------Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 91 --RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIA------GAIGPRLARKAPISVIVV 155 (156)
T ss_dssp --HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSC------SCHHHHHHHHCSSEEEEE
T ss_pred --cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eee------cchHHHHHHhCCCCEEEe
Confidence 234 355555553 6889999999 99999999999999887654 233 348899999999998775
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.85 E-value=6e-09 Score=95.41 Aligned_cols=134 Identities=9% Similarity=-0.002 Sum_probs=88.2
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeecc-CCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCC
Q 038780 360 RILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPL-TGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHP 438 (694)
Q Consensus 360 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 438 (694)
|||+|++.+++...+++.+..++. .....++++|+++- +....... ..... . ......++..+.++++.++.
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~-~~~~~-~--~~~~~~~~~~~~l~~~~~~~- 76 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAK--RHDAKLSIIHVDVNFSDLYTGLI-DVNMS-S--MQDRISTETQKALLDLAESV- 76 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHH--HHTCEEEEEEEEECCGGGCCCCE-EHHHH-H--HTTCCCCHHHHHHHHHHHHS-
T ss_pred eEEEEecCchhhHHHHHHHHHHHH--hcCCEEEEEEEecCchhhhcccc-ccchH-H--HHHHHHHHHHHHHHHHHHHc-
Confidence 799999999999999999998884 34478999999842 21111000 00000 0 00111234445556665543
Q ss_pred CceEE-EEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecC
Q 038780 439 KFVQV-QVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDR 513 (694)
Q Consensus 439 ~~v~v-~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr 513 (694)
++++ +..+.. .+..+.|++.|+++++|+||||.| +... .. ++++.++|++++||||.++..+
T Consensus 77 -~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~~~-------~~-lgs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 77 -DYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QDFW-------SK-LMSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp -SSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CCCH-------HH-HHHHHHHHHTTCCSEEEEEECC
T ss_pred -CCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cchh-------hh-hcchHHHHHhcCCCCEEEeeCC
Confidence 2333 233333 678999999999999999999988 5432 11 5789999999999999887543
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.72 E-value=4e-08 Score=89.56 Aligned_cols=129 Identities=12% Similarity=-0.035 Sum_probs=81.0
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEee-cc-CCCCc-ch-hhccccccCCCCCCCCchhHHHHHHHHh
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLE-PL-TGGST-PL-LINHQLGQKYSKSGAHRQPIIHVFRYFK 434 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlv-el-~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~af~~~~ 434 (694)
-|||+|++.+++...+++.+..++. .....++++|++ +. +.... .. ....... .........++.++.++.+.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~--~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 81 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSE--KLGAELDILAVLEDVYNLERANVTFGLPFPPE-IKEESKKRIERRLREVWEKL 81 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHT--TTCCEEEEEEECHHHHHHHHHHHHHCCCCCTH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHH--HcCCeEEEEEEecccccccccccccCCCCChH-HHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999984 345789999998 63 10000 00 0000000 00000011223333332210
Q ss_pred HhCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 435 AEHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 435 ~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
....+ +++..+.. .+..+.|++.|+++++|+||||.|++ ++.++|++++||||.++
T Consensus 82 -~~~~~-~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 82 -TGSTE-IPGVEYRI---GPLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp -HSCCC-CCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEEC
T ss_pred -hccCC-cceEEEEc---CCHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEee
Confidence 11223 44444433 78999999999999999999999876 15689999999998764
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.51 E-value=1e-07 Score=98.71 Aligned_cols=135 Identities=17% Similarity=0.040 Sum_probs=88.6
Q ss_pred CceEEEEeecCCC-------hHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhcc-ccccCCCCCCCCchhHHHH
Q 038780 358 DLRILVCTHRQDD-------ALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINH-QLGQKYSKSGAHRQPIIHV 429 (694)
Q Consensus 358 ~lrILv~v~~~~~-------~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~a 429 (694)
.-|||+|++.+++ ...+++.+..++.. ....++++|+++.+..... .+. +. .....++..+.
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~--~~~~~~------~~~~~~~~~~~ 203 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL--AKATLHVISAHPSPMLSSA--DPTFQL------SETIEARYREA 203 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEEEC-----------CHHH------HHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH--cCCeEEEEEEecCcccccc--CchhHH------HHHHHHHHHHH
Confidence 4589999999998 78889988888743 4478999999885432110 000 00 00011223344
Q ss_pred HHHHhHhCCCceE-EEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEE
Q 038780 430 FRYFKAEHPKFVQ-VQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVG 508 (694)
Q Consensus 430 f~~~~~~~~~~v~-v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVg 508 (694)
++++.++.. ++ ++..+.. .+..+.|++.|+++++|+||||.|++.+..+.+ +|++.++|++++||||.
T Consensus 204 l~~~~~~~g--~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~------~Gsv~~~vl~~~~~pVL 272 (290)
T 3mt0_A 204 CRTFQAEYG--FSDEQLHIEE---GPADVLIPRTAQKLDAVVTVIGTVARTGLSGAL------IGNTAEVVLDTLESDVL 272 (290)
T ss_dssp HHHHHHHHT--CCTTTEEEEE---SCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC------SCHHHHHHHTTCSSEEE
T ss_pred HHHHHHHcC--CCcceEEEec---cCHHHHHHHHHHhcCCCEEEECCCCCcCCccee------cchHHHHHHhcCCCCEE
Confidence 555554422 21 2222233 689999999999999999999999987765544 44589999999999988
Q ss_pred EEecC
Q 038780 509 ILIDR 513 (694)
Q Consensus 509 Ilvdr 513 (694)
++..+
T Consensus 273 vv~~~ 277 (290)
T 3mt0_A 273 VLKPD 277 (290)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 87433
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.45 E-value=3.1e-07 Score=95.15 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=89.9
Q ss_pred CCceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHh
Q 038780 357 DDLRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAE 436 (694)
Q Consensus 357 ~~lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 436 (694)
..-|||+|++.++....+++.+..++. .....++++|+.+... .++.++.+.++.++
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~--~~~~~l~ll~v~~~~~---------------------~~~~l~~~~~~l~~ 225 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVK--KTGGELHIIHVSEDGD---------------------KTADLRVMEEVIGA 225 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHH--HHTCEEEEEEECSSSC---------------------CHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhh--hcCCEEEEEEEccCch---------------------HHHHHHHHHHHHHH
Confidence 345899999999999999999988873 3446799999977322 12344444444443
Q ss_pred CCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEe
Q 038780 437 HPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILI 511 (694)
Q Consensus 437 ~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlv 511 (694)
.+++++..+.- .+..+.|++.|++.++|||+||.+++.+.. ...++++.++|++++||||.++.
T Consensus 226 --~~~~~~~~~~~---g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~------~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 226 --EGIEVHVHIES---GTPHKAILAKREEINATTIFMGSRGAGSVM------TMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp --TTCCEEEEEEC---SCHHHHHHHHHHHTTCSEEEEECCCCSCHH------HHHHHCHHHHHHHHCSSCEEEEC
T ss_pred --cCCcEEEEEec---CCHHHHHHHHHHhcCcCEEEEeCCCCCCcc------ceeeCcHHHHHHhcCCCCEEEEC
Confidence 23455554332 689999999999999999999999876543 23567799999999999988873
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.40 E-value=3e-07 Score=96.22 Aligned_cols=145 Identities=10% Similarity=0.012 Sum_probs=91.1
Q ss_pred CceEEEEeecCCC-------hHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHH
Q 038780 358 DLRILVCTHRQDD-------ALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVF 430 (694)
Q Consensus 358 ~lrILv~v~~~~~-------~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 430 (694)
.-|||+|++.++. ...+++.+..++........++++|+.+.............. .........++..+.+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l 233 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFD--PNLYNNALRGQHLIAM 233 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCC--HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCccc--HHHHHHHHHHHHHHHH
Confidence 4589999998884 477777777666332003569999999865432110000000 0000000122334555
Q ss_pred HHHhHhCCCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 431 RYFKAEHPKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 431 ~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
+.+.++.... .++..+.- .+..+.|++.|+++++|||+||.|++.+.. ...+|++.++|++++||||.++
T Consensus 234 ~~~~~~~~~~-~~~~~v~~---g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~------~~~~Gsv~~~vl~~~~~pVLvv 303 (319)
T 3olq_A 234 KELRQKFSIP-EEKTHVKE---GLPEQVIPQVCEELNAGIVVLGILGRTGLS------AAFLGNTAEQLIDHIKCDLLAI 303 (319)
T ss_dssp HHHHHHTTCC-GGGEEEEE---SCHHHHHHHHHHHTTEEEEEEECCSCCSTH------HHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHhCCC-cccEEEec---CCcHHHHHHHHHHhCCCEEEEeccCccCCc------cccccHHHHHHHhhCCCCEEEE
Confidence 6665553311 12222233 678999999999999999999999876543 3467889999999999999888
Q ss_pred ecCC
Q 038780 511 IDRS 514 (694)
Q Consensus 511 vdr~ 514 (694)
..++
T Consensus 304 ~~~~ 307 (319)
T 3olq_A 304 KPDG 307 (319)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6555
No 24
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.32 E-value=3.9e-06 Score=76.83 Aligned_cols=127 Identities=12% Similarity=0.114 Sum_probs=80.3
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCcc----------ccccchHHHHHHHhhhcccccCCC
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYA----------RWTNTIDDEFLNGLKKNDEILGNL 597 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~----------~~e~~~d~~~i~~~~~~~~~~~~~ 597 (694)
.++|++++.|+++.+.|+++|.++|+..+++++++++.++...... +..++..++.++++..... ..
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 81 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVA---TT 81 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHH---hc
Confidence 5789999999999999999999999999999999999875322110 0111223445555554321 11
Q ss_pred cE-EEEEEEecCch---HHHH-HHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEE
Q 038780 598 NI-IYKEEAVKDGS---DTAM-IIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVI 672 (694)
Q Consensus 598 ~v-~y~e~~v~~g~---~~~~-~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvv 672 (694)
.+ .+. ..+..|. ++.+ ..++ .++||+++|+++.. ++.+ --+|-..+-+... ++.+||||
T Consensus 82 g~~~~~-~~~~~g~~~~~I~~~~a~~--~~~dliV~G~~~~~------~~~~----~~~Gs~~~~vl~~---~~~pVlvV 145 (146)
T 3s3t_A 82 SAPNLK-TEISYGIPKHTIEDYAKQH--PEIDLIVLGATGTN------SPHR----VAVGSTTSYVVDH---APCNVIVI 145 (146)
T ss_dssp SCCCCE-EEEEEECHHHHHHHHHHHS--TTCCEEEEESCCSS------CTTT----CSSCHHHHHHHHH---CSSEEEEE
T ss_pred CCcceE-EEEecCChHHHHHHHHHhh--cCCCEEEECCCCCC------Ccce----EEEcchHHHHhcc---CCCCEEEe
Confidence 22 221 1123342 2333 3333 78999999988642 2222 2477777777764 67799998
Q ss_pred e
Q 038780 673 Q 673 (694)
Q Consensus 673 q 673 (694)
.
T Consensus 146 ~ 146 (146)
T 3s3t_A 146 R 146 (146)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.28 E-value=3e-06 Score=76.87 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=77.2
Q ss_pred eEEEEeccCCcchHHHHHHHHHHH-hCCCeEEEEEEEeecCCcCcc---------cccc-chHHHHHHHhhhcccccCCC
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMA-RSSRVHLTVIHFTLSKESGYA---------RWTN-TIDDEFLNGLKKNDEILGNL 597 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma-~~~~v~ltv~~~~~~~~~~~~---------~~e~-~~d~~~i~~~~~~~~~~~~~ 597 (694)
++|++++.|++..+.|+++|.++| +..+++++++++.++...... +..+ +..++.++++..... ..
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 78 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFT---EK 78 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHH---HC
Confidence 589999999999999999999999 999999999999875321100 0001 223344555544321 11
Q ss_pred cEEEEEEEecCchHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEE
Q 038780 598 NIIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVI 672 (694)
Q Consensus 598 ~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvv 672 (694)
.+.+. ..+..|. ..+.|.+.+.++||+++|+++.. + |.+.- |-..+.+... ++.+||||
T Consensus 79 g~~~~-~~v~~g~-~~~~I~~~a~~~dliV~G~~~~~------~---~~~~~--Gs~~~~vl~~---~~~pVlvv 137 (138)
T 3idf_A 79 GINPF-VVIKEGE-PVEMVLEEAKDYNLLIIGSSENS------F---LNKIF--ASHQDDFIQK---APIPVLIV 137 (138)
T ss_dssp TCCCE-EEEEESC-HHHHHHHHHTTCSEEEEECCTTS------T---TSSCC--CCTTCHHHHH---CSSCEEEE
T ss_pred CCCeE-EEEecCC-hHHHHHHHHhcCCEEEEeCCCcc------h---HHHHh--CcHHHHHHhc---CCCCEEEe
Confidence 22222 2233453 33444334449999999998642 1 22222 6666666654 56789987
No 26
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.25 E-value=2.8e-06 Score=78.19 Aligned_cols=126 Identities=15% Similarity=0.123 Sum_probs=76.8
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcC-----------cccc---ccchHHHHHHHhhhcccc
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESG-----------YARW---TNTIDDEFLNGLKKNDEI 593 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~-----------~~~~---e~~~d~~~i~~~~~~~~~ 593 (694)
.++|++++.|++..+.|+++|.++|+..+++++++++.++.... ..+. .++..++.++++..+..
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 84 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG- 84 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 56899999999999999999999999999999999998652110 0001 11223345555544421
Q ss_pred cCCCcEEEEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEE
Q 038780 594 LGNLNIIYKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISIL 670 (694)
Q Consensus 594 ~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvL 670 (694)
...+.. .+..| +++.+..++ .++||+++|+++.. .| + .-+|-..+.+... ++.+||
T Consensus 85 --~~~~~~---~~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~---------~~-~-~~~Gs~~~~vl~~---~~~pVl 143 (150)
T 3tnj_A 85 --IDPAHR---WLVWGEPREEIIRIAEQ--ENVDLIVVGSHGRH---------GL-A-LLLGSTANSVLHY---AKCDVL 143 (150)
T ss_dssp --CCGGGE---EEEESCHHHHHHHHHHH--TTCSEEEEEEC-------------------CCCHHHHHHHH---CSSEEE
T ss_pred --CCcceE---EEecCCHHHHHHHHHHH--cCCCEEEEecCCCC---------Cc-C-eEecchHHHHHHh---CCCCEE
Confidence 111111 12223 334444444 58999999998642 12 2 3567777777764 678999
Q ss_pred EEeee
Q 038780 671 VIQQQ 675 (694)
Q Consensus 671 vvqq~ 675 (694)
||...
T Consensus 144 vv~~~ 148 (150)
T 3tnj_A 144 AVRLR 148 (150)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99764
No 27
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.21 E-value=3.8e-06 Score=76.92 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=77.2
Q ss_pred eEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCC-c---------Cc----cccccchHHHHHHHhhhccccc
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKE-S---------GY----ARWTNTIDDEFLNGLKKNDEIL 594 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~-~---------~~----~~~e~~~d~~~i~~~~~~~~~~ 594 (694)
++|++++.|++..+.|+++|.++|+..+++++++++.++.. . .. .+..++..++.++++......
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 81 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE- 81 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 58999999999999999999999999999999999986421 0 00 011112334455555432110
Q ss_pred CCCcE---EEEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCcee
Q 038780 595 GNLNI---IYKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASIS 668 (694)
Q Consensus 595 ~~~~v---~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~S 668 (694)
....+ .+ .+..| +++.+..++ .++||+++|+++.. ++.+ .-+|-..+-+... ++.+
T Consensus 82 ~g~~~~~~~~---~~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~------~~~~----~~~Gs~~~~vl~~---~~~p 143 (147)
T 3hgm_A 82 LGVPADKVRA---FVKGGRPSRTIVRFARK--RECDLVVIGAQGTN------GDKS----LLLGSVAQRVAGS---AHCP 143 (147)
T ss_dssp TTCCGGGEEE---EEEESCHHHHHHHHHHH--TTCSEEEECSSCTT------CCSC----CCCCHHHHHHHHH---CSSC
T ss_pred cCCCccceEE---EEecCCHHHHHHHHHHH--hCCCEEEEeCCCCc------cccc----eeeccHHHHHHhh---CCCC
Confidence 01112 32 22233 233344443 58999999998742 1222 2467777777764 6678
Q ss_pred EEEE
Q 038780 669 ILVI 672 (694)
Q Consensus 669 vLvv 672 (694)
||||
T Consensus 144 VlvV 147 (147)
T 3hgm_A 144 VLVV 147 (147)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8886
No 28
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.18 E-value=6.4e-06 Score=74.65 Aligned_cols=124 Identities=20% Similarity=0.234 Sum_probs=77.9
Q ss_pred eEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCC--cC---cccc---ccchHHHHHHHhhhcccccCCCcEE
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKE--SG---YARW---TNTIDDEFLNGLKKNDEILGNLNII 600 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~--~~---~~~~---e~~~d~~~i~~~~~~~~~~~~~~v~ 600 (694)
++|++++.|+++++.|+++|.++|+..+++++++++.++.. .. .++. .++..++.++++..+. +...+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~ 79 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT---GVPKED 79 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH---CCCGGG
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc---CCCccE
Confidence 58999999999999999999999999999999999986421 10 0011 1123345565555431 110222
Q ss_pred EEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038780 601 YKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQ 673 (694)
Q Consensus 601 y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvq 673 (694)
+. +..| +++.+..++ .++||+++|+++.. ++.+ .-+|-..+-+... ++.+||||.
T Consensus 80 ~~---~~~g~~~~~I~~~a~~--~~~dliV~G~~~~~------~~~~----~~~Gs~~~~vl~~---~~~pVlvv~ 137 (137)
T 2z08_A 80 AL---LLEGVPAEAILQAARA--EKADLIVMGTRGLG------ALGS----LFLGSQSQRVVAE---APCPVLLVR 137 (137)
T ss_dssp EE---EEESSHHHHHHHHHHH--TTCSEEEEESSCTT------CCSC----SSSCHHHHHHHHH---CSSCEEEEC
T ss_pred EE---EEecCHHHHHHHHHHH--cCCCEEEECCCCCc------hhhh----hhhccHHHHHHhc---CCCCEEEeC
Confidence 21 1223 334444444 58999999998742 1222 2477777777764 677999983
No 29
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.18 E-value=2.8e-06 Score=88.51 Aligned_cols=133 Identities=8% Similarity=-0.023 Sum_probs=86.5
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchh-HHHHHHHHhHhC
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQP-IIHVFRYFKAEH 437 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~af~~~~~~~ 437 (694)
-|||+|++.++....+++.+..++.. ....++++|+.+..... +. .... . .......++ +.+.++.+.+..
T Consensus 172 ~~Ilv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~-~~--~~~~--~-~~~~~~~~~~l~~~~~~~~~~~ 243 (309)
T 3cis_A 172 APVLVGVDGSSASELATAIAFDEASR--RNVDLVALHAWSDVDVS-EW--PGID--W-PATQSMAEQVLAERLAGWQERY 243 (309)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHHH--TTCCEEEEEESCSSCCT-TC--SSCC--H-HHHHHHHHHHHHHHHTTHHHHC
T ss_pred CeEEEEeCCChHHHHHHHHHHHHHHh--cCCEEEEEEEeeccccc-CC--Cccc--H-HHHHHHHHHHHHHHHHHHHhhC
Confidence 48999999999999999998888843 33569999998743211 00 0000 0 000001111 222333333321
Q ss_pred CCceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEe
Q 038780 438 PKFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILI 511 (694)
Q Consensus 438 ~~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlv 511 (694)
.++.++..+.. .+..+.|++.|+ ++|+||||.|++.+..+.+ +|++.++|++++||||.++.
T Consensus 244 -~~~~~~~~~~~---g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l------~Gsv~~~vl~~~~~pVlvv~ 305 (309)
T 3cis_A 244 -PNVAITRVVVR---DQPARQLVQRSE--EAQLVVVGSRGRGGYAGML------VGSVGETVAQLARTPVIVAR 305 (309)
T ss_dssp -TTSCEEEEEES---SCHHHHHHHHHT--TCSEEEEESSCSSCCTTCS------SCHHHHHHHHHCSSCEEEEC
T ss_pred -CCCcEEEEEEc---CCHHHHHHHhhC--CCCEEEECCCCCCCccccc------cCcHHHHHHhcCCCCEEEeC
Confidence 24566654433 689999999997 8999999999887765554 34589999999999988773
No 30
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.16 E-value=1.2e-05 Score=73.01 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=79.2
Q ss_pred eEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeec-CC-cCc---------cccccchHHHHHHHhhhcccccCCC
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLS-KE-SGY---------ARWTNTIDDEFLNGLKKNDEILGNL 597 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~-~~-~~~---------~~~e~~~d~~~i~~~~~~~~~~~~~ 597 (694)
++|++++.|+++++.|+++|.++|+..+++++++++.++ .. ... .+..++..++.++++..+.. ..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 79 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVD---YP 79 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSS---SC
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcC---CC
Confidence 589999999999999999999999999999999999843 11 100 01112233456666654421 11
Q ss_pred cEEEEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEee
Q 038780 598 NIIYKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQQ 674 (694)
Q Consensus 598 ~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvqq 674 (694)
+. +..+..| +++.+..++ .++||+++|++ ... | ..+|-..+-+... ++.+||||..
T Consensus 80 -~~--~~~~~~g~~~~~I~~~a~~--~~~dliV~G~~-~~~---------~---~~lgs~~~~vl~~---~~~pVlvv~~ 138 (141)
T 1jmv_A 80 -IS--EKLSGSGDLGQVLSDAIEQ--YDVDLLVTGHH-QDF---------W---SKLMSSTRQVMNT---IKIDMLVVPL 138 (141)
T ss_dssp -CC--CEEEEEECHHHHHHHHHHH--TTCCEEEEEEC-CCC---------H---HHHHHHHHHHHTT---CCSEEEEEEC
T ss_pred -ce--EEEEecCCHHHHHHHHHHh--cCCCEEEEeCC-Cch---------h---hhhcchHHHHHhc---CCCCEEEeeC
Confidence 10 1112223 344455554 67999999988 421 2 1267777777754 6789999975
Q ss_pred e
Q 038780 675 Q 675 (694)
Q Consensus 675 ~ 675 (694)
.
T Consensus 139 ~ 139 (141)
T 1jmv_A 139 R 139 (141)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.16 E-value=6.6e-06 Score=74.96 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=75.1
Q ss_pred eEEEEeccCCcc--hHHHHHHHHHHHhCCCeEEEEEEEeecCCcC--------c-cccccchHHH---HHHHhhhccccc
Q 038780 529 YRLAVLYMGGED--DMEALAYARRMARSSRVHLTVIHFTLSKESG--------Y-ARWTNTIDDE---FLNGLKKNDEIL 594 (694)
Q Consensus 529 ~~I~~~f~gg~d--dreAl~~a~rma~~~~v~ltv~~~~~~~~~~--------~-~~~e~~~d~~---~i~~~~~~~~~~ 594 (694)
++|++++.|+++ .+.|+++|.++|+..+++++++++.++.... . .+..++..++ .++++..+...
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 80 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSI- 80 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCC-
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCC-
Confidence 579999999999 9999999999999999999999998652210 0 0011112222 33333333210
Q ss_pred CCCcEEEEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEE
Q 038780 595 GNLNIIYKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILV 671 (694)
Q Consensus 595 ~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLv 671 (694)
....+.+ .+..| +++.+..++ .++||+++|+++ . |+.+ .-+|-..+-+... ++.+|||
T Consensus 81 ~~~~v~~---~~~~g~~~~~I~~~a~~--~~~dliV~G~~~-~------~~~~----~~~Gs~~~~v~~~---~~~pVlv 141 (143)
T 3fdx_A 81 PEDRMHF---HVAEGSPKDKILALAKS--LPADLVIIASHR-P------DITT----YLLGSNAAAVVRH---AECSVLV 141 (143)
T ss_dssp CGGGEEE---EEEESCHHHHHHHHHHH--TTCSEEEEESSC-T------TCCS----CSSCHHHHHHHHH---CSSEEEE
T ss_pred CCCceEE---EEEecChHHHHHHHHHH--hCCCEEEEeCCC-C------CCee----eeeccHHHHHHHh---CCCCEEE
Confidence 0112332 22333 233333333 589999999984 2 1222 2467777777764 6789999
Q ss_pred Ee
Q 038780 672 IQ 673 (694)
Q Consensus 672 vq 673 (694)
|.
T Consensus 142 v~ 143 (143)
T 3fdx_A 142 VR 143 (143)
T ss_dssp EC
T ss_pred eC
Confidence 83
No 32
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.12 E-value=7.4e-06 Score=76.98 Aligned_cols=128 Identities=19% Similarity=0.210 Sum_probs=78.6
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEE--EEeecCCc--C----c---cccccchHHHHHHHhhhcccccCC
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVI--HFTLSKES--G----Y---ARWTNTIDDEFLNGLKKNDEILGN 596 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~--~~~~~~~~--~----~---~~~e~~~d~~~i~~~~~~~~~~~~ 596 (694)
.++|++++.|++..+.|+++|.++|+ .+++++++ ++.++... . . .+..++..++.++++..... .
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~ 92 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAH---N 92 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHH---T
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 57999999999999999999999999 99999999 87654221 0 0 01112234456666554321 1
Q ss_pred CcEE-EEEEEecCch---HHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEE
Q 038780 597 LNII-YKEEAVKDGS---DTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVI 672 (694)
Q Consensus 597 ~~v~-y~e~~v~~g~---~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvv 672 (694)
..+. +... +..|. ++++..++ .++|||++|+++.. ++.+ .-+|-..+-+... ++.+||||
T Consensus 93 ~gv~~v~~~-v~~G~~~~~I~~~a~~--~~~DLIV~G~~g~~------~~~~----~~lGSva~~vl~~---a~~PVlvV 156 (163)
T 1tq8_A 93 AGAKNVEER-PIVGAPVDALVNLADE--EKADLLVVGNVGLS------TIAG----RLLGSVPANVSRR---AKVDVLIV 156 (163)
T ss_dssp TTCCEEEEE-EECSSHHHHHHHHHHH--TTCSEEEEECCCCC------SHHH----HHTBBHHHHHHHH---TTCEEEEE
T ss_pred cCCCeEEEE-EecCCHHHHHHHHHHh--cCCCEEEECCCCCC------cccc----eeeccHHHHHHHh---CCCCEEEE
Confidence 1122 2222 23343 33344443 78999999998642 1222 2367777777764 67899999
Q ss_pred eee
Q 038780 673 QQQ 675 (694)
Q Consensus 673 qq~ 675 (694)
...
T Consensus 157 ~~~ 159 (163)
T 1tq8_A 157 HTT 159 (163)
T ss_dssp CCC
T ss_pred eCC
Confidence 754
No 33
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.11 E-value=4.4e-06 Score=77.83 Aligned_cols=128 Identities=15% Similarity=0.049 Sum_probs=80.6
Q ss_pred eeEEEEeccC-CcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEEEEe
Q 038780 528 VYRLAVLYMG-GEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAV 606 (694)
Q Consensus 528 ~~~I~~~f~g-g~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v 606 (694)
.++|++++.| ++..+.|+++|.++|+..+++++++++.++..... +..++..++.++++...... ....+.. +..+
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~g~~~~~-~~~v 100 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK-DEDIIEAKETLSWAVSIIRK-EGAEGEE-HLLV 100 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC-HHHHHHHHHHHHHHHHHHHH-TTCCEEE-EEEE
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc-HHHHHHHHHHHHHHHHHHHh-cCCCceE-EEEe
Confidence 5689999999 99999999999999999999999999987532211 11122233445554432110 1122332 1224
Q ss_pred cCch---HHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038780 607 KDGS---DTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQ 673 (694)
Q Consensus 607 ~~g~---~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvq 673 (694)
..|. ++++..++ .++||+++|+++.. ++.+ --+|-..+-+... ++.+||||+
T Consensus 101 ~~G~~~~~I~~~a~~--~~~DLIV~G~~g~~------~~~~----~~lGSv~~~vl~~---a~~PVLvVr 155 (155)
T 3dlo_A 101 RGKEPPDDIVDFADE--VDAIAIVIGIRKRS------PTGK----LIFGSVARDVILK---ANKPVICIK 155 (155)
T ss_dssp SSSCHHHHHHHHHHH--TTCSEEEEECCEEC------TTSC----EECCHHHHHHHHH---CSSCEEEEC
T ss_pred cCCCHHHHHHHHHHH--cCCCEEEECCCCCC------CCCC----EEeccHHHHHHHh---CCCCEEEeC
Confidence 4443 33333333 58999999988642 1222 2467777777764 677999984
No 34
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.10 E-value=1.4e-05 Score=75.27 Aligned_cols=132 Identities=11% Similarity=0.044 Sum_probs=81.2
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcC---------------c-ccc---ccchHHHHHHHhh
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESG---------------Y-ARW---TNTIDDEFLNGLK 588 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~---------------~-~~~---e~~~d~~~i~~~~ 588 (694)
.++|++++.|+++.+.|+++|.++|+..+++++++++.++.... + .+. .++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998653210 0 010 0112234455554
Q ss_pred hcccccCCCcEEEEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCC
Q 038780 589 KNDEILGNLNIIYKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITA 665 (694)
Q Consensus 589 ~~~~~~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~ 665 (694)
..... ....+.. +..+..| +++.+..++ .++|||++|+++.. ++.+ --+|-..+-+... +
T Consensus 85 ~~~~~-~g~~~~~-~~~~~~g~~~~~I~~~a~~--~~~DlIV~G~~g~~------~~~~----~~~Gsv~~~vl~~---~ 147 (170)
T 2dum_A 85 EEVKR-AFRAKNV-RTIIRFGIPWDEIVKVAEE--ENVSLIILPSRGKL------SLSH----EFLGSTVMRVLRK---T 147 (170)
T ss_dssp HHHHH-HTTCSEE-EEEEEEECHHHHHHHHHHH--TTCSEEEEESCCCC------C--T----TCCCHHHHHHHHH---C
T ss_pred HHHHH-cCCceee-eeEEecCChHHHHHHHHHH--cCCCEEEECCCCCC------cccc----ceechHHHHHHHh---C
Confidence 32100 0112322 1122233 334444444 58999999998642 2222 2477777777764 6
Q ss_pred ceeEEEEeeec
Q 038780 666 SISILVIQQQI 676 (694)
Q Consensus 666 ~~SvLvvqq~~ 676 (694)
+.+||||....
T Consensus 148 ~~PVlvv~~~~ 158 (170)
T 2dum_A 148 KKPVLIIKEVD 158 (170)
T ss_dssp SSCEEEECCCC
T ss_pred CCCEEEEccCC
Confidence 78999997543
No 35
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.08 E-value=1.1e-05 Score=75.29 Aligned_cols=129 Identities=15% Similarity=0.201 Sum_probs=81.2
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecC-----C---cC-------ccc------cc---cchHHHH
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSK-----E---SG-------YAR------WT---NTIDDEF 583 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~-----~---~~-------~~~------~e---~~~d~~~ 583 (694)
.++|++++.|+++.+.|+++|.++|+..+++++++++.++. . .. ..+ .+ ++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998653 1 10 000 00 1122344
Q ss_pred HHHhhhcccccCCCcEEEEEEEecCc---hHHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhc
Q 038780 584 LNGLKKNDEILGNLNIIYKEEAVKDG---SDTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFAS 660 (694)
Q Consensus 584 i~~~~~~~~~~~~~~v~y~e~~v~~g---~~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las 660 (694)
++++..... ...+.+... +..| +++.+..++ .++|||++|+++.. ++.+ --+|-..+.+..
T Consensus 85 l~~~~~~~~---~~g~~~~~~-v~~G~~~~~I~~~a~~--~~~dlIV~G~~g~~------~~~~----~~~GSv~~~vl~ 148 (162)
T 1mjh_A 85 MENIKKELE---DVGFKVKDI-IVVGIPHEEIVKIAED--EGVDIIIMGSHGKT------NLKE----ILLGSVTENVIK 148 (162)
T ss_dssp HHHHHHHHH---HTTCEEEEE-EEEECHHHHHHHHHHH--TTCSEEEEESCCSS------CCTT----CSSCHHHHHHHH
T ss_pred HHHHHHHHH---HcCCceEEE-EcCCCHHHHHHHHHHH--cCCCEEEEcCCCCC------Cccc----eEecchHHHHHH
Confidence 555543321 112222222 2334 234444444 58999999998642 2222 247888888776
Q ss_pred CCCCCceeEEEEeee
Q 038780 661 SDITASISILVIQQQ 675 (694)
Q Consensus 661 ~~~~~~~SvLvvqq~ 675 (694)
. ++.+||||...
T Consensus 149 ~---~~~pVlvv~~~ 160 (162)
T 1mjh_A 149 K---SNKPVLVVKRK 160 (162)
T ss_dssp H---CCSCEEEECCC
T ss_pred h---CCCCEEEEeCC
Confidence 5 67899999753
No 36
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.07 E-value=1.1e-05 Score=74.97 Aligned_cols=128 Identities=19% Similarity=0.164 Sum_probs=78.9
Q ss_pred eeEEEEecc--CCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCcc--------ccccchHHHHHHHhhhcccccCCC
Q 038780 528 VYRLAVLYM--GGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYA--------RWTNTIDDEFLNGLKKNDEILGNL 597 (694)
Q Consensus 528 ~~~I~~~f~--gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~--------~~e~~~d~~~i~~~~~~~~~~~~~ 597 (694)
.++|++++. |+++.+.|+++|.++|+..+++++++++.++...... +..++..++.++++.......+..
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 94 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVN 94 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 578999999 9999999999999999999999999999875321100 011122334555554321100111
Q ss_pred cEEEEEEEecCch---HHHHH-HHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhhhhhcCCCCCceeEEEEe
Q 038780 598 NIIYKEEAVKDGS---DTAMI-IRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGDLFASSDITASISILVIQ 673 (694)
Q Consensus 598 ~v~y~e~~v~~g~---~~~~~-i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd~las~~~~~~~SvLvvq 673 (694)
.+.+ ....+|. ++++. .++ .++||+++|+++.. .|. . -+|-..+.+... ++.+||||.
T Consensus 95 ~~~~--~v~~~g~~~~~I~~~~a~~--~~~DlIV~G~~g~~---------~~~-~-~~Gs~~~~vl~~---a~~PVlvV~ 156 (156)
T 3fg9_A 95 QVEP--LVYEGGDVDDVILEQVIPE--FKPDLLVTGADTEF---------PHS-K-IAGAIGPRLARK---APISVIVVR 156 (156)
T ss_dssp SEEE--EEEECSCHHHHHHHTHHHH--HCCSEEEEETTCCC---------TTS-S-SCSCHHHHHHHH---CSSEEEEEC
T ss_pred ceEE--EEEeCCCHHHHHHHHHHHh--cCCCEEEECCCCCC---------ccc-e-eecchHHHHHHh---CCCCEEEeC
Confidence 2332 2222243 23333 333 78999999998742 132 2 478888877764 677999983
No 37
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.86 E-value=2.2e-05 Score=79.71 Aligned_cols=113 Identities=11% Similarity=0.045 Sum_probs=78.5
Q ss_pred ceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhHhCC
Q 038780 359 LRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKAEHP 438 (694)
Q Consensus 359 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 438 (694)
-|||+|++.++....+++.+..++... ...++++|+.+..+ + .++.++.+.++.++
T Consensus 155 ~~ilv~~d~s~~~~~al~~a~~la~~~--~a~l~ll~v~~~~~---------~-----------~~~~l~~~~~~l~~-- 210 (268)
T 3ab8_A 155 EGALLGYDASESAVRALHALAPLARAL--GLGVRVVSVHEDPA---------R-----------AEAWALEAEAYLRD-- 210 (268)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHH--TCCEEEEEECSSHH---------H-----------HHHHHHHHHHHHHH--
T ss_pred CEEEEEECCCHHHHHHHHHHHHhhhcC--CCEEEEEEEcCcHH---------H-----------HHHHHHHHHHHHHH--
Confidence 489999999999999999887776433 34599999976310 0 12233333333333
Q ss_pred CceEEEEEEEEcCCCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 439 KFVQVQVFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 439 ~~v~v~~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
.+++++..+. . .+..+.|.+.|++. |+|+||. +..+.+.+ ++.++|++++||||.++
T Consensus 211 ~~~~~~~~~~-~--g~~~~~i~~~a~~~--dliV~G~----~~~~~~~G------s~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 211 HGVEASALVL-G--GDAADHLLRLQGPG--DLLALGA----PVRRLVFG------STAERVIRNAQGPVLTA 267 (268)
T ss_dssp TTCCEEEEEE-C--SCHHHHHHHHCCTT--EEEEEEC----CCSCCSSC------CHHHHHHHHCSSCEEEE
T ss_pred cCCceEEEEe-C--CChHHHHHHHHHhC--CEEEECC----cccccEec------cHHHHHHhcCCCCEEEe
Confidence 2455555433 2 78999999999998 9999997 22333333 38899999999998775
No 38
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.83 E-value=5.3e-05 Score=68.50 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=36.9
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEe-e
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFT-L 566 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~-~ 566 (694)
.++|++++.|.++.+.|+++|.++|+..+++++++++. +
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 43 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLED 43 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecc
Confidence 57899999999999999999999999999999999998 5
No 39
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.73 E-value=0.00019 Score=67.74 Aligned_cols=130 Identities=13% Similarity=0.186 Sum_probs=74.7
Q ss_pred eeEEEEeccCCc---------chHHHHHHHHHHH-hC--CCeEEEEEEEeecCC--cC--------cc------ccccch
Q 038780 528 VYRLAVLYMGGE---------DDMEALAYARRMA-RS--SRVHLTVIHFTLSKE--SG--------YA------RWTNTI 579 (694)
Q Consensus 528 ~~~I~~~f~gg~---------ddreAl~~a~rma-~~--~~v~ltv~~~~~~~~--~~--------~~------~~e~~~ 579 (694)
.++|++++.|.+ ..+.|+++|.+++ +. .+++++++++.++.. .. .. +..++.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 578999999999 8899999999986 54 689999999975321 10 00 000111
Q ss_pred HHHHHHHhhhcccccCCCcEEEEEEEecCch---HHHHHHHhhhcCCcEEEEcccCCCCCccccCCCCCCCCCccchhhh
Q 038780 580 DDEFLNGLKKNDEILGNLNIIYKEEAVKDGS---DTAMIIRSMEEKYDLVLVGRRRRSDSPFTLGLSEWCDLPELGPIGD 656 (694)
Q Consensus 580 d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g~---~~~~~i~~~~~~~DLiiVG~~~~~~s~~~~gl~~w~e~~eLG~igd 656 (694)
.++.++++..... ...+.+.-. +..|. ++++..++ .++|||++|+++.. |+.+| -+|-..+
T Consensus 85 ~~~~l~~~~~~~~---~~g~~~~~~-v~~G~~~~~I~~~a~~--~~~DLIVmG~~g~~------~~~~~----~~Gsva~ 148 (175)
T 2gm3_A 85 GLHLLEFFVNKCH---EIGVGCEAW-IKTGDPKDVICQEVKR--VRPDFLVVGSRGLG------RFQKV----FVGTVSA 148 (175)
T ss_dssp HHHHHHHHHHHHH---HHTCEEEEE-EEESCHHHHHHHHHHH--HCCSEEEEEECCCC------------------CHHH
T ss_pred HHHHHHHHHHHHH---HCCCceEEE-EecCCHHHHHHHHHHH--hCCCEEEEeCCCCC------hhhhh----hcCchHH
Confidence 2345555543311 112333212 23342 33344443 58999999998642 22222 3677777
Q ss_pred hhhcCCCCCceeEEEEeeec
Q 038780 657 LFASSDITASISILVIQQQI 676 (694)
Q Consensus 657 ~las~~~~~~~SvLvvqq~~ 676 (694)
-+... ++.+||||....
T Consensus 149 ~vl~~---a~~pVlvv~~~~ 165 (175)
T 2gm3_A 149 FCVKH---AECPVMTIKRNA 165 (175)
T ss_dssp HHHHH---CSSCEEEEECCG
T ss_pred HHHhC---CCCCEEEEcCCc
Confidence 77764 678999998643
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.35 E-value=0.077 Score=55.43 Aligned_cols=71 Identities=7% Similarity=0.043 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHhh-hhhhhhhhhhccccccCCCChhhHHHHHHHHHHHHHHHHHHHHhhc
Q 038780 263 FKLIAVYLPAVWFNTHSTDAAALSLILT-VKGIVELGTFGTNFNKQVRNTGEFTVAVVLILILASIIPIIVRKLH 336 (694)
Q Consensus 263 ~K~~~~~l~~~~~~~~~~~~~~lg~~m~-~kG~~~li~~~~~~~~~~i~~~~f~~lv~~~lltt~i~~~l~~~l~ 336 (694)
.-+..++..+|.+|.+.+|+..+++-.. .+....+.++...+.. ++..--...+..+...+.+..+.++.-
T Consensus 240 ~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~~~la~~~~ 311 (332)
T 3zux_A 240 IGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATYWA 311 (332)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667778899999999999988444 4455666665544421 233333444555665566665555543
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.36 E-value=0.09 Score=52.89 Aligned_cols=222 Identities=14% Similarity=0.037 Sum_probs=134.5
Q ss_pred CCCceEEEEeecCCChHHHHHHHHhhCCCCCCCcEEEEEEeeccCCCCcchhhccccccCCCCCCCCchhHHHHHHHHhH
Q 038780 356 NDDLRILVCTHRQDDALAGIRLLEISHPMKESPLSVYGLYLEPLTGGSTPLLINHQLGQKYSKSGAHRQPIIHVFRYFKA 435 (694)
Q Consensus 356 ~~~lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~Lhlvel~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 435 (694)
+-.-.|||++.+|..-..++.++..+...+ ..+.+.++.. ......+ .++ +.+++.|-+
T Consensus 18 nWrP~iLV~sg~p~~~~~li~la~~lt~~~---G~ltv~~i~p--~~~~~~l---------------~~q-l~~l~~~l~ 76 (294)
T 3g40_A 18 TWKANLLVPVEDPRELMGTFDFLRDITYPK---GSVKLLGLAG--NTDKENL---------------LSQ-LPSISEGFQ 76 (294)
T ss_dssp -CCCEEEEEESCHHHHHHHHHHHHHHHTTT---CEEEEEECC-----CTTCH---------------HHH-HHHHHHHHH
T ss_pred CCCCcEEEecCCchhhhhHHHHHHHhccCc---eeEEEEEEcc--CCCccHH---------------HHH-HHHHHHHHH
Confidence 445689999999999999999999999766 5688888843 2111100 122 356666655
Q ss_pred hCCCceEEEEEEEEcCCCCchHHHHHHHHhc-----CccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEE
Q 038780 436 EHPKFVQVQVFSAISPPKVMHEDICWLAFDK-----SISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGIL 510 (694)
Q Consensus 436 ~~~~~v~v~~~t~vs~~~~m~~~I~~~A~e~-----~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIl 510 (694)
+ .+|. .++++-+-.+.++++..+.+.. +.+.|++||..++. ....++.+.++. .++.-.|.++
T Consensus 77 ~--r~v~--a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~~-~~~~~nVlil 144 (294)
T 3g40_A 77 E--EGVF--SSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRKA-SMYRMGVLLF 144 (294)
T ss_dssp H--TTCE--EEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHHH-HHTTCEEEEE
T ss_pred h--CCce--eEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHHH-HHhCceEEEE
Confidence 4 3454 4444444478899999988775 56899999865442 233566677665 3446676666
Q ss_pred ecCCCCCCCCccccCCceeEEEEecc--------CC--cchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchH
Q 038780 511 IDRSRIHGPSSIFVAPFVYRLAVLYM--------GG--EDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTID 580 (694)
Q Consensus 511 vdr~~~~~~~~~~~~~~~~~I~~~f~--------gg--~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d 580 (694)
-+.... ++. ..++|=+=.- || .+-.-++-+|-.+.++.++++.+..++++ +.+++..
T Consensus 145 ~~~~~~-~fg------~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a~~~a 211 (294)
T 3g40_A 145 SKHPQA-GLG------RQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQAQAA 211 (294)
T ss_dssp ECCTTT-TTT------TSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHHHHHH
T ss_pred ecCCcc-CCC------CCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHHHHHH
Confidence 433321 222 1344544312 22 34456888888888888999999999864 2344456
Q ss_pred HHHHHHhhhcccccCCCcEEEEEEEecCchHHHHHHHhhhcCCcEEEEcccC
Q 038780 581 DEFLNGLKKNDEILGNLNIIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRR 632 (694)
Q Consensus 581 ~~~i~~~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~ 632 (694)
+++++++.+.. .-+...+ .|. .+..+++++. .+.||+++|-..
T Consensus 212 ~~~l~~Lv~~~---Ri~a~~~---vv~--~~F~~il~~s-~~ADL~flGl~~ 254 (294)
T 3g40_A 212 ENFLQSLAELA---RIPNVKM---QVL--RENPIKSSKL-PFASLHIFSLDP 254 (294)
T ss_dssp HHHHHHHHHHH---TCCSCEE---EEE--SSCTTTSSSC-CCCSEEEEECCS
T ss_pred HHHHHHHHHHh---cCCceEE---Eec--CchHHHHhhC-cCCCEEEEcCCC
Confidence 67777776543 1121212 222 2344556663 779999999865
No 42
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=71.51 E-value=5.2 Score=41.28 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=40.5
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
++++.|.||+|+--.|.++.+.....+..+.++++.+.-.+ .-+.++++++..+.
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~-------~et~~~v~~~~~~~ 102 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF-------QEMYRFRDQMVEEM 102 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC-------HHHHHHHHHHHHTT
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC-------HHHHHHHHHHHHHc
Confidence 58899999999999999999887655566778887654322 12456787777654
No 43
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=59.58 E-value=9.2 Score=38.12 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=53.0
Q ss_pred cCCcchHHHHHHHHHHHhCCCe--EEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEEEE-e--cCch
Q 038780 536 MGGEDDMEALAYARRMARSSRV--HLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEA-V--KDGS 610 (694)
Q Consensus 536 ~gg~ddreAl~~a~rma~~~~v--~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~-v--~~g~ 610 (694)
.=.|.|.+|++.|.|+++..+. +++++.+-++. .++.+++.... +.+++...+.. . -+..
T Consensus 34 ~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~-----------~~~~lr~ala~----GaD~vi~v~d~~~~~~~~~ 98 (264)
T 1o97_C 34 DLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR-----------VDESLRKCLAK----GADRAVRVWDDAAEGSDAI 98 (264)
T ss_dssp EECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG-----------GHHHHHHHHHT----TCSEEEEECCGGGTTCCHH
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh-----------HHHHHHHHHhc----CCCEEEEEcCcccccCCHH
Confidence 3358899999999999987665 88888865321 12344444221 23344433211 1 1222
Q ss_pred HHHHHHHhh--hcCCcEEEEcccCCC-----CCccccCCCCC
Q 038780 611 DTAMIIRSM--EEKYDLVLVGRRRRS-----DSPFTLGLSEW 645 (694)
Q Consensus 611 ~~~~~i~~~--~~~~DLiiVG~~~~~-----~s~~~~gl~~w 645 (694)
.+...+.+. ..+||+|+.|+.... -.|.++.+.+|
T Consensus 99 ~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 99 VVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 333344333 246999999988632 23444445555
No 44
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=58.37 E-value=15 Score=36.31 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=52.0
Q ss_pred CcchHHHHHHHHHHHhCCCe--EEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEE--EEe---cCch
Q 038780 538 GEDDMEALAYARRMARSSRV--HLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKE--EAV---KDGS 610 (694)
Q Consensus 538 g~ddreAl~~a~rma~~~~v--~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e--~~v---~~g~ 610 (694)
.|.|.+|++.|.|+++. +. +++++-+-++. .++.+++.... +.+++...+ ... -+..
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------a~~~lr~ala~----GaD~vi~v~~d~~~~~~~~~~ 99 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ-----------AAETLRTALAM----GADRAILVVAADDVQQDIEPL 99 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG-----------GHHHHHHHHHH----TCSEEEEEECCSSTTCCCCHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------HHHHHHHHHhc----CCCEEEEEecChhhcccCCHH
Confidence 58899999999999987 65 88888875421 12334443221 223444333 111 1223
Q ss_pred HHHHHHHhh--hcCCcEEEEcccCCC-----CCccccCCCCC
Q 038780 611 DTAMIIRSM--EEKYDLVLVGRRRRS-----DSPFTLGLSEW 645 (694)
Q Consensus 611 ~~~~~i~~~--~~~~DLiiVG~~~~~-----~s~~~~gl~~w 645 (694)
.+...+.+. ..+||+|+.|+.... -.|.++.+.+|
T Consensus 100 ~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 100 AVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 333344333 256999999988622 23445555555
No 45
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=58.03 E-value=15 Score=36.45 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=52.4
Q ss_pred CCcchHHHHHHHHHHHhCCCe--EEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEE-E-Ee---cCc
Q 038780 537 GGEDDMEALAYARRMARSSRV--HLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKE-E-AV---KDG 609 (694)
Q Consensus 537 gg~ddreAl~~a~rma~~~~v--~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e-~-~v---~~g 609 (694)
=.|.|.+|++.|.|+++. +. +++++-+-++. .++.+++.... +.+++...+ . .. -+.
T Consensus 38 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------a~~~lr~ala~----GaD~vi~v~~d~~~~~~~~~ 101 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-----------CQETIRTALAM----GADRGIHVEVPPAEAERLGP 101 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-----------HHHHHHHHHHH----TCSEEEEEECCHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------HHHHHHHHHhc----CCCEEEEEecChhhcccCCH
Confidence 358899999999999987 65 88888875431 12344444221 233444333 1 11 122
Q ss_pred hHHHHHHHhh--hcCCcEEEEcccCCC-----CCccccCCCCC
Q 038780 610 SDTAMIIRSM--EEKYDLVLVGRRRRS-----DSPFTLGLSEW 645 (694)
Q Consensus 610 ~~~~~~i~~~--~~~~DLiiVG~~~~~-----~s~~~~gl~~w 645 (694)
..+...+.+. ..+||+|+.|+.... -.|.++.+.+|
T Consensus 102 ~~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 102 LQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 2333333333 256999999988622 23445555555
No 46
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=54.14 E-value=26 Score=35.63 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=53.9
Q ss_pred EEEEeccCCcchHHHHHHHHHHH-h-----------------CCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMA-R-----------------SSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma-~-----------------~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
++++.|.||+|+--.|.++.+.. + .++.++.++++.+...+ .-+.++++++..+.
T Consensus 55 ~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f-------pet~~fv~~~~~~y 127 (306)
T 2wsi_A 55 EISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF-------PTLENFVLETSERY 127 (306)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC-------HHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC-------HHHHHHHHHHHHHc
Confidence 59999999999999998888763 1 13566788887654322 23557888887654
Q ss_pred cccCCCcEEEEEEEec----Cc-hHHHHHHHhhhcCCcEEEEcccCCC
Q 038780 592 EILGNLNIIYKEEAVK----DG-SDTAMIIRSMEEKYDLVLVGRRRRS 634 (694)
Q Consensus 592 ~~~~~~~v~y~e~~v~----~g-~~~~~~i~~~~~~~DLiiVG~~~~~ 634 (694)
. +.......+ .. .+......+.....+.+++|.|++.
T Consensus 128 g------l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 128 C------LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp T------EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred C------CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 1 222111111 11 1122222222235789999988764
No 47
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=53.95 E-value=68 Score=30.23 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=36.1
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
+|++.|.||+|+--.|.++.+.. -++.++++.+.... .-+.++++++..+.
T Consensus 46 ~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~-------~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 46 EYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF-------PETYRFIDELTDKL 96 (215)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC-------HHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC-------HHHHHHHHHHHHHh
Confidence 69999999999999998888874 24667777654211 12456788877654
No 48
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=51.03 E-value=15 Score=37.37 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=52.2
Q ss_pred EEEEeccCCcchHHHHHHHHHHH-h-----------------CCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMA-R-----------------SSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma-~-----------------~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
++++.|.||+|+.-.|.++.+-- + .+...+.++++.+...+.+ ..++++++..+.
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpE-------T~ef~d~~~~~y 132 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKT-------LENFIEETSLRY 132 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHH-------HHHHHHHHHHHT
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHH-------HHHHHHHHHHHh
Confidence 58999999999999999987742 1 1235678888766544422 346788877664
Q ss_pred cccCCCcEEEEEEEecCch---HHHHHHHhhhcCCcEEEEcccCC
Q 038780 592 EILGNLNIIYKEEAVKDGS---DTAMIIRSMEEKYDLVLVGRRRR 633 (694)
Q Consensus 592 ~~~~~~~v~y~e~~v~~g~---~~~~~i~~~~~~~DLiiVG~~~~ 633 (694)
. ........+.+. +-..-+++....+|.++.|.|++
T Consensus 133 g------L~L~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 133 S------LSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp T------EEEEECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred C------CcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 2 121111111111 12223333334689999999986
No 49
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=49.07 E-value=1.1e+02 Score=31.25 Aligned_cols=93 Identities=11% Similarity=0.027 Sum_probs=49.6
Q ss_pred HhhhhcccCCCCchhHHHHHHhhhhhhhhhhHHHhhhcccccccccccCC-chh-HHHHHHHHHHHHHHHHHHHHHhhCC
Q 038780 200 FIFGLTVPTGPPLASTLVEKLDTIVTGLFLPLMATFCGLKSNLRDLSKGL-SYP-LVFGMTIGLFFKLIAVYLPAVWFNT 277 (694)
Q Consensus 200 f~~GL~i~~~~p~~~~l~~kl~~~~~~~f~PlFF~~~Gl~~dl~~l~~~~-~~~-~~~ii~~~~~~K~~~~~l~~~~~~~ 277 (694)
.++|...|+... . ++... ...+++-+...|++++..++.... .|. .....+.-++...+.++..++.++.
T Consensus 28 ~~lg~~~P~~~~---~----~~~~i-~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l 99 (332)
T 3zux_A 28 AAAAFFAPDTFK---W----AGPYI-PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL 99 (332)
T ss_dssp HHHHHHCGGGTG---G----GGGGH-HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcchhhh---h----hHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356666665421 1 22222 345566677789999988876321 232 3333444455666777777777777
Q ss_pred ChhHHHHHHHHhh-hhhhhhhhhh
Q 038780 278 HSTDAAALSLILT-VKGIVELGTF 300 (694)
Q Consensus 278 ~~~~~~~lg~~m~-~kG~~~li~~ 300 (694)
+......+-+... +-|....+..
T Consensus 100 ~~~~~~Glil~~~~P~~~~s~v~t 123 (332)
T 3zux_A 100 PAEIAVGVILVGCCPGGTASNVMT 123 (332)
T ss_dssp CHHHHHHHHHHHHSCCCTHHHHHH
T ss_pred ChHHHHHHHHHhcCCchhHHHHHH
Confidence 6543333333222 3444444433
No 50
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=48.45 E-value=33 Score=37.09 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=44.8
Q ss_pred eEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
.+|++.+.||+|..-.+.++.++.+..+.+++++++...-. ..+.+.+.++++++..+.
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr----g~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR----GRESEEEMEFVKRFCVER 77 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC----THHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC----ccccHHHHHHHHHHHHHc
Confidence 46999999999999999999999888889999999865321 011234567788877654
No 51
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=43.31 E-value=43 Score=29.63 Aligned_cols=60 Identities=13% Similarity=-0.007 Sum_probs=42.5
Q ss_pred CCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCC
Q 038780 453 KVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRS 514 (694)
Q Consensus 453 ~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~ 514 (694)
....+.|.++++|.+++.||+|.-++. ||+........+...+++-++.+.||-..=+|.
T Consensus 39 ~~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERl 98 (138)
T 1nu0_A 39 TPDWNIIERLLKEWQPDEIIVGLPLNM--DGTEQPLTARARKFANRIHGRFGVEVKLHDERL 98 (138)
T ss_dssp EECHHHHHHHHHHHCCSEEEEEEEECT--TSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_pred chHHHHHHHHHHHcCCCEEEEecccCC--CcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 345789999999999999999976554 565433444566777777666688985544554
No 52
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=41.26 E-value=40 Score=36.01 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=59.6
Q ss_pred eEEEEeccCCcchHHHHHHHHHHHhC-CCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEEEEe-
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMARS-SRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAV- 606 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma~~-~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v- 606 (694)
.+|++.+.||+|.--.+.++.++.+. .+.+++++++...-. .+.+.+.++++++..+.. - .....+..+
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-----~~s~~~~~~v~~~~~~lg---i-~~~v~~~~~~ 84 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-----ANADAWVTHCENVCQQWQ---V-PLVVERVQLA 84 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-----SSHHHHHHHHHHHHHHTT---C-CEEEECCCCC
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-----cccHHHHHHHHHHHHHcC---C-cEEEEEecCC
Confidence 47999999999999999999998877 889999999864321 112235567777776542 1 222211111
Q ss_pred cCc---hHHH-----HHHHhhhcCCcEEEEcccC
Q 038780 607 KDG---SDTA-----MIIRSMEEKYDLVLVGRRR 632 (694)
Q Consensus 607 ~~g---~~~~-----~~i~~~~~~~DLiiVG~~~ 632 (694)
+.+ ++.. .++.+.+.++|.++.|.+.
T Consensus 85 ~~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~ 118 (433)
T 1ni5_A 85 QEGLGIEAQARQARYQAFARTLLPGEVLVTAQHL 118 (433)
T ss_dssp CSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccc
Confidence 112 1111 1334445568999998764
No 53
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=41.19 E-value=5.2 Score=26.22 Aligned_cols=28 Identities=11% Similarity=-0.048 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHhccc
Q 038780 66 DDWIDLFTATTMLTSFPVVACFLMHLKI 93 (694)
Q Consensus 66 ~~~~l~ig~~ls~Ts~~vv~~iL~el~~ 93 (694)
+..++++|+++|.|.+..+..++++++.
T Consensus 3 ~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 3 KKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 4557889999999999999999999875
No 54
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=38.59 E-value=37 Score=34.48 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=42.9
Q ss_pred eEEEEeccCCcchHHHHHHHHHHHhCCCeE-EEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 529 YRLAVLYMGGEDDMEALAYARRMARSSRVH-LTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 529 ~~I~~~f~gg~ddreAl~~a~rma~~~~v~-ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
.+|++.+.||+|+--.+..+.+..+..+.+ ++++++...-. .+...+.++++++..+.
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r-----~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR-----ESAERDEEFCKEFAKER 83 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS-----THHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC-----cccHHHHHHHHHHHHHc
Confidence 579999999999999999999888777888 99999864321 11223556777776653
No 55
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=34.73 E-value=1.6 Score=28.70 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=23.2
Q ss_pred HHHHHHHHhchhhhHHHHhhhhcccCC
Q 038780 183 VVAVVGETVGIQYFYGPFIFGLTVPTG 209 (694)
Q Consensus 183 ~~~~~ae~~g~~~~lGaf~~GL~i~~~ 209 (694)
++++++|.+++|++++.+.+|+.+.+.
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 456788999999999999999998754
No 56
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=32.85 E-value=36 Score=33.58 Aligned_cols=54 Identities=7% Similarity=0.009 Sum_probs=39.7
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKND 591 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~ 591 (694)
++++.|.||+|+--.|.++.+.... +.++.++++.+...+ .-+.++++++..+.
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~~-------~et~~~v~~~~~~~ 96 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHHF-------PQTLTLKNEIEKKY 96 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCBC-------HHHHHHHHHHHHHH
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCCC-------HHHHHHHHHHHHHh
Confidence 5899999999999999999988765 556778887554322 12456777777664
No 57
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=32.56 E-value=84 Score=25.90 Aligned_cols=57 Identities=9% Similarity=-0.010 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecC
Q 038780 453 KVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDR 513 (694)
Q Consensus 453 ~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr 513 (694)
....+.|.++++|++++.||+|.-++. ||+........+...+++-++ +.||- ++|.
T Consensus 37 ~~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV~-~~DE 93 (98)
T 1iv0_A 37 EEDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEVE-LWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEEE-EECC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCEE-EECC
Confidence 345678999999999999999986654 444333334466677777666 88874 4443
No 58
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=32.36 E-value=44 Score=30.03 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=31.0
Q ss_pred EEEEEcCCCCchHHHHHHHHhcCccEEEecCccccC
Q 038780 445 VFSAISPPKVMHEDICWLAFDKSISLIILPCHRKWN 480 (694)
Q Consensus 445 ~~t~vs~~~~m~~~I~~~A~e~~~~lIilp~h~~~~ 480 (694)
-.-.+-|...|+..|.++|++-++|+||-|+....-
T Consensus 92 LIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~~ 127 (153)
T 2k4m_A 92 LIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDI 127 (153)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBCC
T ss_pred EEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcC
Confidence 334788999999999999999999999999876543
No 59
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=28.94 E-value=2.5e+02 Score=28.54 Aligned_cols=122 Identities=14% Similarity=0.165 Sum_probs=68.0
Q ss_pred CccccchhHHHHHHHHHhhhCCCcEEEEecCCCCCCCCccccCCceeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEE
Q 038780 483 GELISDSQVLRNLNSKVLHKAPSSVGILIDRSRIHGPSSIFVAPFVYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVI 562 (694)
Q Consensus 483 g~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~ 562 (694)
|+++..-+...++.+.|-+....+|++ |... .. . ..+|.+..++.++++++.+.- +..+
T Consensus 188 GslenR~r~~~eiv~avr~~v~~pv~v---Rls~--~~-------~------~~~g~~~~~~~~la~~L~~~G---vd~i 246 (340)
T 3gr7_A 188 GSPENRYRFLGEVIDAVREVWDGPLFV---RISA--SD-------Y------HPDGLTAKDYVPYAKRMKEQG---VDLV 246 (340)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSCEEE---EEES--CC-------C------STTSCCGGGHHHHHHHHHHTT---CCEE
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCceEE---Eecc--cc-------c------cCCCCCHHHHHHHHHHHHHcC---CCEE
Confidence 455555556677888887777788777 3210 01 0 125666778899999988763 2234
Q ss_pred EEeecCCcCcc-ccccchHHHHHHHhhhcccccCCCcEEEEEEEecCchHHHHHHHhhhcCCcEEEEcccC
Q 038780 563 HFTLSKESGYA-RWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRR 632 (694)
Q Consensus 563 ~~~~~~~~~~~-~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~ 632 (694)
++......... ......+.++++++++.. ...+.-.- -+.+.++..+.+++ ...|+|.+||.-
T Consensus 247 ~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~----~iPVi~~G-gI~s~e~a~~~L~~--G~aD~V~iGR~~ 310 (340)
T 3gr7_A 247 DVSSGAIVPARMNVYPGYQVPFAELIRREA----DIPTGAVG-LITSGWQAEEILQN--GRADLVFLGREL 310 (340)
T ss_dssp EEECCCSSCCCCCCCTTTTHHHHHHHHHHT----TCCEEEES-SCCCHHHHHHHHHT--TSCSEEEECHHH
T ss_pred EEecCCccCCCCCCCccccHHHHHHHHHHc----CCcEEeeC-CCCCHHHHHHHHHC--CCeeEEEecHHH
Confidence 43321111000 011122446777777653 22343322 23455666666665 569999999885
No 60
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.75 E-value=85 Score=25.39 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEEEEecCchHHHHHHHh
Q 038780 539 EDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAVKDGSDTAMIIRS 618 (694)
Q Consensus 539 ~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~ 618 (694)
-||.||.+.|.|+.+..|+.+-++-. + .++..-++|-+|.+.+. .+ + .+|...+|.-..+.+
T Consensus 58 vddkewaekairfvkslgaqvliiiy---d------qdqnrleefsrevrrrg----fe-v----rtvtspddfkksler 119 (134)
T 2l69_A 58 VDDKEWAEKAIRFVKSLGAQVLIIIY---D------QDQNRLEEFSREVRRRG----FE-V----RTVTSPDDFKKSLER 119 (134)
T ss_dssp CSSHHHHHHHHHHHHHHCCCCEEEEE---C------SCHHHHHHHHHHHHHTT----CC-E----EEESSHHHHHHHHHH
T ss_pred EccHHHHHHHHHHHHhcCCeEEEEEE---e------CchhHHHHHHHHHHhcC----ce-E----EEecChHHHHHHHHH
Confidence 59999999999999999988755442 1 13345667777777652 21 2 456666666554443
No 61
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=28.16 E-value=2.6e+02 Score=23.24 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=0.0
Q ss_pred EEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEEEEecCc
Q 038780 530 RLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAVKDG 609 (694)
Q Consensus 530 ~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g 609 (694)
.|.+.| ..|-|.|.-..|=.+..|+++.+++ + +.+.+.-.+-+++|.... +.. .+|+|-
T Consensus 3 qifvvf---ssdpeilkeivreikrqgvrvvlly---s------dqdekrrrerleefekqg-------vdv--rtvedk 61 (162)
T 2l82_A 3 QIFVVF---SSDPEILKEIVREIKRQGVRVVLLY---S------DQDEKRRRERLEEFEKQG-------VDV--RTVEDK 61 (162)
T ss_dssp EEEEEE---ESCHHHHHHHHHHHHHTTCEEEEEE---C------CSCHHHHHHHHHHHHTTT-------CEE--EECCSH
T ss_pred eEEEEe---cCCHHHHHHHHHHHHhCCeEEEEEe---c------CchHHHHHHHHHHHHHcC-------Cce--eeeccH
Q ss_pred hHHHHHHHhhhcCC---cEEEEcccCC
Q 038780 610 SDTAMIIRSMEEKY---DLVLVGRRRR 633 (694)
Q Consensus 610 ~~~~~~i~~~~~~~---DLiiVG~~~~ 633 (694)
+|.-+-|+++=..| |.+++-+..+
T Consensus 62 edfrenireiwerypqldvvvivttdd 88 (162)
T 2l82_A 62 EDFRENIREIWERYPQLDVVVIVTTDD 88 (162)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEecCc
No 62
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=27.87 E-value=1.5e+02 Score=26.35 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=42.1
Q ss_pred CCCchHHHHHHHHhcCccEEEecCccccCCCCccccchhHHHHHHHHHhhhCCCcEEEEecCC
Q 038780 452 PKVMHEDICWLAFDKSISLIILPCHRKWNAKGELISDSQVLRNLNSKVLHKAPSSVGILIDRS 514 (694)
Q Consensus 452 ~~~m~~~I~~~A~e~~~~lIilp~h~~~~~dg~~~~~~~~~r~~n~~Vl~~ApcsVgIlvdr~ 514 (694)
....++.|.+++++.+++.|++|.-.+ .+|+-.....-.|.+...+.++.++||-..=+|.
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~~--~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPKN--MNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCCC--BTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeeec--CCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 456899999999999999999997543 3454322223346677777777789985543444
No 63
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=25.21 E-value=2.9e+02 Score=28.16 Aligned_cols=122 Identities=15% Similarity=0.168 Sum_probs=67.6
Q ss_pred CccccchhHHHHHHHHHhhhCC--CcEEEEecCCCCCCCCccccCCceeEEEEeccCCcchHHHHHHHHHHHhCCCeEEE
Q 038780 483 GELISDSQVLRNLNSKVLHKAP--SSVGILIDRSRIHGPSSIFVAPFVYRLAVLYMGGEDDMEALAYARRMARSSRVHLT 560 (694)
Q Consensus 483 g~~~~~~~~~r~~n~~Vl~~Ap--csVgIlvdr~~~~~~~~~~~~~~~~~I~~~f~gg~ddreAl~~a~rma~~~~v~lt 560 (694)
|+++..-+...++.+.|-+..+ .+|++ |... .. ...||.+..++.++++++.+. +.
T Consensus 187 GslenR~rf~~eiv~aVr~avg~d~pv~v---Rls~--~~-------------~~~~g~~~~~~~~~a~~l~~~----vd 244 (343)
T 3kru_A 187 NSIENRARFLIEVIDEVRKNWPENKPIFV---RVSA--DD-------------YMEGGINIDMMVEYINMIKDK----VD 244 (343)
T ss_dssp SSHHHHTHHHHHHHHHHHHTSCTTSCEEE---EEEC--CC-------------SSTTSCCHHHHHHHHHHHTTT----CS
T ss_pred cchHhHHHHHHHHHHHHHhcCCccCCeEE---Eeec--hh-------------hhccCccHHHHHHHHHHhhcc----cc
Confidence 5565555667888888887764 46665 3210 00 012466778899999999876 33
Q ss_pred EEEEeecCCcCcc-ccccchHHHHHHHhhhcccccCCCcEEEEEEEecCchHHHHHHHhhhcCCcEEEEcccCC
Q 038780 561 VIHFTLSKESGYA-RWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAVKDGSDTAMIIRSMEEKYDLVLVGRRRR 633 (694)
Q Consensus 561 v~~~~~~~~~~~~-~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiiVG~~~~ 633 (694)
.+++......... ......+.++++++++.. ...+.-.. .+.+.++..+.+++ ...|+|.+||.--
T Consensus 245 ~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~----~iPVi~~G-gi~t~e~Ae~~l~~--G~aD~V~iGR~~l 311 (343)
T 3kru_A 245 LIDVSSGGLLNVDINLYPGYQVKYAETIKKRC----NIKTSAVG-LITTQELAEEILSN--ERADLVALGRELL 311 (343)
T ss_dssp EEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH----TCEEEEES-SCCCHHHHHHHHHT--TSCSEEEESHHHH
T ss_pred EEeccCCceEeeeecccCceeehHHHHHHHhc----Ccccceee-eeeHHHHHHHHHhc--hhhHHHHHHHHHh
Confidence 3443212111000 001122446777777643 22333222 23455566666665 6699999999853
No 64
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=21.18 E-value=3.5e+02 Score=26.05 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=47.8
Q ss_pred eeEEEEeccCCcchHHHHHHHHHHHhCCCeEEEEEEEeecCCcCccccccchHHHHHHHhhhcccccCCCcEEEEEEEec
Q 038780 528 VYRLAVLYMGGEDDMEALAYARRMARSSRVHLTVIHFTLSKESGYARWTNTIDDEFLNGLKKNDEILGNLNIIYKEEAVK 607 (694)
Q Consensus 528 ~~~I~~~f~gg~ddreAl~~a~rma~~~~v~ltv~~~~~~~~~~~~~~e~~~d~~~i~~~~~~~~~~~~~~v~y~e~~v~ 607 (694)
.+.|+++..|.++|.+.+.-+.+-+++.++++..+-+-.. .++++++++.....-..+.++. .++
T Consensus 126 ~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~-----------~~~~~L~~iA~~~~~~g~~~~~----~~~ 190 (266)
T 4hqo_A 126 IQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQG-----------INHQFNRLIAGCRPREPNCKFY----SYA 190 (266)
T ss_dssp EEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSS-----------CCHHHHHHHHTCCTTCSSCTTE----ECS
T ss_pred CeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCcc-----------cCHHHHHHhhCCCCCCCCCCeE----Eec
Confidence 4567777888787765555555666677888888876331 2446777776432100012332 247
Q ss_pred CchHHHHHHHhhhcC
Q 038780 608 DGSDTAMIIRSMEEK 622 (694)
Q Consensus 608 ~g~~~~~~i~~~~~~ 622 (694)
|.+++.++.+++...
T Consensus 191 d~~~L~~i~~~l~~~ 205 (266)
T 4hqo_A 191 DWNEAVALIKPFIAK 205 (266)
T ss_dssp CHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhh
Confidence 777777777776544
Done!