Query 038783
Match_columns 76
No_of_seqs 110 out of 932
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 04:43:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hbx_A SRF, serum response fac 100.0 5.3E-34 1.8E-38 182.4 1.1 67 10-76 3-69 (92)
2 1k6o_B SRF, serum response fac 100.0 1.9E-33 6.5E-38 182.9 1.4 66 11-76 3-68 (103)
3 1mnm_A Protein (MCM1 transcrip 100.0 2.5E-33 8.6E-38 181.6 1.3 67 10-76 9-75 (100)
4 1egw_A MADS box transcription 100.0 4.6E-32 1.6E-36 168.3 1.5 59 18-76 1-59 (77)
5 3p57_A Myocyte-specific enhanc 100.0 1.6E-31 5.5E-36 170.3 1.1 59 18-76 1-59 (90)
6 3izc_Z 60S ribosomal protein R 63.6 3.8 0.00013 27.7 2.1 28 49-76 3-34 (155)
7 4a17_T RPL24, 60S ribosomal pr 62.7 3.9 0.00013 27.8 2.0 28 49-76 5-36 (158)
8 3iz5_Z 60S ribosomal protein L 59.0 4.5 0.00015 27.6 1.8 28 49-76 5-36 (162)
9 2zkr_u 60S ribosomal protein L 58.9 4.1 0.00014 27.6 1.6 28 49-76 3-34 (157)
10 1vq8_U 50S ribosomal protein L 57.2 4.9 0.00017 23.5 1.5 27 50-76 4-34 (66)
11 3j21_V 50S ribosomal protein L 55.6 7.2 0.00025 22.8 2.1 27 50-76 5-35 (66)
12 3qhy_B Beta-lactamase inhibito 48.3 10 0.00035 26.1 2.3 24 51-76 66-89 (282)
13 3nrf_A APAG protein; structura 48.0 3.7 0.00013 26.3 -0.1 41 28-73 22-62 (106)
14 4a4f_A SurviVal of motor neuro 41.6 16 0.00055 20.3 2.0 15 58-72 13-27 (64)
15 3qhy_B Beta-lactamase inhibito 38.8 18 0.0006 24.9 2.3 23 52-76 28-50 (282)
16 4d9s_A UVB-resistance protein 38.6 22 0.00076 25.4 2.8 27 50-76 70-96 (406)
17 3s6w_A Tudor domain-containing 38.6 23 0.00078 18.8 2.3 14 58-71 6-19 (54)
18 3kci_A Probable E3 ubiquitin-p 37.2 27 0.00091 24.8 3.1 25 51-76 110-134 (389)
19 3kci_A Probable E3 ubiquitin-p 35.8 18 0.00061 25.7 1.9 26 51-76 214-240 (389)
20 3mvd_K Regulator of chromosome 34.3 20 0.0007 25.4 2.0 25 51-76 349-373 (423)
21 1mhn_A SurviVal motor neuron p 32.4 28 0.00095 18.9 2.0 14 58-71 8-21 (59)
22 2phn_A F420-0:gamma-glutamyl l 31.7 4.8 0.00016 29.0 -1.7 26 49-74 137-162 (254)
23 3of7_A Regulator of chromosome 31.3 35 0.0012 25.0 2.9 26 50-76 69-94 (473)
24 2ky6_A Mediator of RNA polymer 30.7 34 0.0012 23.3 2.6 20 52-71 116-135 (166)
25 1g5v_A SurviVal motor neuron p 29.8 31 0.0011 20.7 2.1 16 57-72 14-29 (88)
26 3of7_A Regulator of chromosome 28.7 35 0.0012 24.9 2.5 25 51-76 380-404 (473)
27 1a12_A RCC1, regulator of chro 28.5 42 0.0014 23.8 2.9 25 51-76 167-191 (413)
28 2lx9_A Ferrous iron transport 28.2 75 0.0026 18.3 3.6 33 41-73 19-51 (83)
29 3pnw_C Tudor domain-containing 27.8 41 0.0014 19.4 2.3 15 57-71 21-35 (77)
30 2k5l_A FEOA; structure, NESG, 26.6 87 0.003 17.6 3.6 41 21-72 12-52 (81)
31 3fg8_A Uncharacterized protein 25.8 51 0.0018 18.3 2.5 21 52-72 16-36 (118)
32 2d9t_A Tudor domain-containing 25.3 43 0.0015 19.3 2.1 14 58-71 14-27 (78)
33 2k5f_A Ferrous iron transport 25.1 1.2E+02 0.004 18.3 4.8 41 21-72 11-51 (105)
34 1wmh_B Partitioning defective- 24.9 93 0.0032 18.8 3.6 55 21-75 6-64 (86)
35 3mvd_K Regulator of chromosome 24.5 40 0.0014 23.9 2.2 26 51-76 245-270 (423)
36 2k4y_A FEOA-like protein; GFT 24.3 87 0.003 17.9 3.3 31 42-72 25-55 (86)
37 2z3g_A Blasticidin-S deaminase 22.3 75 0.0026 19.9 2.9 29 44-72 10-42 (130)
38 1p0z_A Sensor kinase CITA; tra 22.0 74 0.0025 19.0 2.8 31 43-74 36-66 (131)
39 2kkc_A Sequestosome-1; P62, PB 21.7 1E+02 0.0035 18.9 3.4 37 40-76 43-80 (102)
40 1mzu_A PPR; photoactive yellow 20.0 54 0.0018 20.9 1.9 22 53-74 27-48 (129)
No 1
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=5.3e-34 Score=182.41 Aligned_cols=67 Identities=42% Similarity=0.665 Sum_probs=62.8
Q ss_pred CCcccccccccceeeEEecCCCCcceehhhhhchhhhhhhhhccccCceEEEEEEcCCCcEEEccCC
Q 038783 10 SSSQSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 10 ~~~~~k~mgRkKi~ik~I~n~~~R~~Tf~KRk~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
+..++++|||+||+|++|+|+..|++||+||+.||||||+|||+||||+||||||+++|++|+|+|+
T Consensus 3 ~~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~ 69 (92)
T 1hbx_A 3 AKPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69 (92)
T ss_dssp ---CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECG
T ss_pred cCcCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999985
No 2
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=1.9e-33 Score=182.92 Aligned_cols=66 Identities=42% Similarity=0.669 Sum_probs=62.6
Q ss_pred CcccccccccceeeEEecCCCCcceehhhhhchhhhhhhhhccccCceEEEEEEcCCCcEEEccCC
Q 038783 11 SSQSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 11 ~~~~k~mgRkKi~ik~I~n~~~R~~Tf~KRk~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
..++++|||+||+|++|+|+..|++||+||+.||||||+|||+||||+||||||+++|++|+|+|+
T Consensus 3 ~~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~ 68 (103)
T 1k6o_B 3 KPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68 (103)
T ss_dssp --CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECG
T ss_pred CCCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCc
Confidence 457899999999999999999999999999999999999999999999999999999999999985
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.97 E-value=2.5e-33 Score=181.60 Aligned_cols=67 Identities=46% Similarity=0.732 Sum_probs=60.3
Q ss_pred CCcccccccccceeeEEecCCCCcceehhhhhchhhhhhhhhccccCceEEEEEEcCCCcEEEccCC
Q 038783 10 SSSQSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 10 ~~~~~k~mgRkKi~ik~I~n~~~R~~Tf~KRk~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
+...+++|||+||+|++|+|+..|++||+||+.||||||+|||+||||+||||||+++|++|+|+||
T Consensus 9 ~~~~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp 75 (100)
T 1mnm_A 9 PTNNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75 (100)
T ss_dssp ------CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT
T ss_pred cCCCCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC
Confidence 4457899999999999999999999999999999999999999999999999999999999999986
No 4
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.97 E-value=4.6e-32 Score=168.33 Aligned_cols=59 Identities=63% Similarity=1.030 Sum_probs=57.9
Q ss_pred cccceeeEEecCCCCcceehhhhhchhhhhhhhhccccCceEEEEEEcCCCcEEEccCC
Q 038783 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 18 gRkKi~ik~I~n~~~R~~Tf~KRk~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
||+||+|++|+|+..|++||+||+.||+|||+|||+||||+||||||+++|++|+|+|+
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~ 59 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC
Confidence 89999999999999999999999999999999999999999999999999999999975
No 5
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.96 E-value=1.6e-31 Score=170.30 Aligned_cols=59 Identities=63% Similarity=1.030 Sum_probs=58.0
Q ss_pred cccceeeEEecCCCCcceehhhhhchhhhhhhhhccccCceEEEEEEcCCCcEEEccCC
Q 038783 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 18 gRkKi~ik~I~n~~~R~~Tf~KRk~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
||+||+|++|+|+..|++||+||+.||||||+|||+||||+||||||+++|++|+|+|+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~ 59 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC
Confidence 89999999999999999999999999999999999999999999999999999999985
No 6
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=63.56 E-value=3.8 Score=27.73 Aligned_cols=28 Identities=11% Similarity=0.439 Sum_probs=22.6
Q ss_pred hhhccccCceE----EEEEEcCCCcEEEccCC
Q 038783 49 YELSVLCDAEV----ALIVFSSRGRLYEYANN 76 (76)
Q Consensus 49 ~ELs~Lcg~~v----~liv~~~~gk~~~f~s~ 76 (76)
.|+|..||.+| .++.+-.||++|.|+|+
T Consensus 3 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcss 34 (155)
T 3izc_Z 3 VEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNS 34 (155)
T ss_dssp CEECTTTCSEECTTCCEEEECTTCCEEEESSH
T ss_pred eeEecCcCCcccCCCCeEEEecCCCEEEEEcH
Confidence 36888999988 56666779999999973
No 7
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=62.67 E-value=3.9 Score=27.78 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=22.7
Q ss_pred hhhccccCceE----EEEEEcCCCcEEEccCC
Q 038783 49 YELSVLCDAEV----ALIVFSSRGRLYEYANN 76 (76)
Q Consensus 49 ~ELs~Lcg~~v----~liv~~~~gk~~~f~s~ 76 (76)
.|+|..||.+| .++.+-.||++|.|+|+
T Consensus 5 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcss 36 (158)
T 4a17_T 5 TGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTK 36 (158)
T ss_dssp CEECTTTCCEECTTCCEEEECTTSCEEEESCH
T ss_pred EEEecCcCCcccCCCCeEEEeeCCceEEEEcH
Confidence 37888999988 56666779999999973
No 8
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=58.97 E-value=4.5 Score=27.58 Aligned_cols=28 Identities=14% Similarity=0.369 Sum_probs=22.4
Q ss_pred hhhccccCceE----EEEEEcCCCcEEEccCC
Q 038783 49 YELSVLCDAEV----ALIVFSSRGRLYEYANN 76 (76)
Q Consensus 49 ~ELs~Lcg~~v----~liv~~~~gk~~~f~s~ 76 (76)
.|+|..||.+| .++.+-.||++|.|+|+
T Consensus 5 ~e~CsFcG~~IyPG~G~~fVr~Dgkvf~Fcss 36 (162)
T 3iz5_Z 5 TELCRFSGQKIYPGKGIRFIRADSQVFLFANS 36 (162)
T ss_dssp CEECTTTCSEECSSCSEEEECTTSCEEEECSH
T ss_pred EEEecCcCCcccCCCCeEEEecCCCEEEEECH
Confidence 37888999988 46666778999999973
No 9
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=58.92 E-value=4.1 Score=27.63 Aligned_cols=28 Identities=14% Similarity=0.343 Sum_probs=21.9
Q ss_pred hhhccccCceE----EEEEEcCCCcEEEccCC
Q 038783 49 YELSVLCDAEV----ALIVFSSRGRLYEYANN 76 (76)
Q Consensus 49 ~ELs~Lcg~~v----~liv~~~~gk~~~f~s~ 76 (76)
.|+|..||..| .++.+-.||++|.|+|+
T Consensus 3 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcss 34 (157)
T 2zkr_u 3 VELCSFSGYKIYPGHGRRYARTDGKVFQFLNA 34 (157)
T ss_dssp -CBCTTTCCBCCTTCCEEEECTTSCEEEESSH
T ss_pred eeeecCcCCcccCCCceEEEeeCCcEEEEecH
Confidence 37888899887 56666778999999973
No 10
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=57.25 E-value=4.9 Score=23.53 Aligned_cols=27 Identities=7% Similarity=0.309 Sum_probs=21.0
Q ss_pred hhccccCceE----EEEEEcCCCcEEEccCC
Q 038783 50 ELSVLCDAEV----ALIVFSSRGRLYEYANN 76 (76)
Q Consensus 50 ELs~Lcg~~v----~liv~~~~gk~~~f~s~ 76 (76)
|+|.-||.+| .++.+-.||++|.|+|+
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcss 34 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHFCSS 34 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEESCH
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEEECH
Confidence 6778888877 55666778999999873
No 11
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.65 E-value=7.2 Score=22.79 Aligned_cols=27 Identities=11% Similarity=0.358 Sum_probs=21.6
Q ss_pred hhccccCceE----EEEEEcCCCcEEEccCC
Q 038783 50 ELSVLCDAEV----ALIVFSSRGRLYEYANN 76 (76)
Q Consensus 50 ELs~Lcg~~v----~liv~~~~gk~~~f~s~ 76 (76)
|+|.-||.+| ....+-.||++|.|+|+
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcss 35 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLFFCSR 35 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEEESSH
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEEEECH
Confidence 6788888887 56666779999999873
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=48.26 E-value=10 Score=26.14 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=16.2
Q ss_pred hccccCceEEEEEEcCCCcEEEccCC
Q 038783 51 LSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 51 Ls~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
..+-||....+++ + +|++|+|+++
T Consensus 66 ~~ia~G~~hs~~l-~-~G~v~~wG~n 89 (282)
T 3qhy_B 66 DAIAAGNYHSLAL-K-DGEVIAWGGN 89 (282)
T ss_dssp CEEEECSSEEEEE-E-TTEEEEEECC
T ss_pred EEEEeCCCEEEEE-E-CCEEEEeeCC
Confidence 3456777777666 4 7788877754
No 13
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=47.96 E-value=3.7 Score=26.29 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=30.9
Q ss_pred cCCCCcceehhhhhchhhhhhhhhccccCceEEEEEEcCCCcEEEc
Q 038783 28 ENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY 73 (76)
Q Consensus 28 ~n~~~R~~Tf~KRk~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~f 73 (76)
.++.....||.=.-..|.++.-+|+.+| ++.|+++|+-|..
T Consensus 22 ~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 22 GDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp TTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred CCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 3444555666667778888999999775 9999999987654
No 14
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=41.58 E-value=16 Score=20.30 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=12.3
Q ss_pred eEEEEEEcCCCcEEE
Q 038783 58 EVALIVFSSRGRLYE 72 (76)
Q Consensus 58 ~v~liv~~~~gk~~~ 72 (76)
+.|+..|++||++|.
T Consensus 13 d~c~A~~s~Dg~wYr 27 (64)
T 4a4f_A 13 DKCMAVWSEDGQCYE 27 (64)
T ss_dssp CEEEEECTTTSSEEE
T ss_pred CEEEEEECCCCCEEE
Confidence 678899998998773
No 15
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=38.81 E-value=18 Score=24.92 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=18.5
Q ss_pred ccccCceEEEEEEcCCCcEEEccCC
Q 038783 52 SVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 52 s~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
.+-||....+++ + +|++|+|+++
T Consensus 28 ~ia~G~~h~~~l-~-~G~v~~wG~n 50 (282)
T 3qhy_B 28 AIAGGYFHGLAL-K-GGKVLGWGAN 50 (282)
T ss_dssp EEEECSSEEEEE-E-TTEEEEEECC
T ss_pred EEEeCCCeEEEE-E-CCEEEEEeCC
Confidence 556888887777 5 8999999875
No 16
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=38.64 E-value=22 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=21.7
Q ss_pred hhccccCceEEEEEEcCCCcEEEccCC
Q 038783 50 ELSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 50 ELs~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
=..+-||....+++...+|++|+|+.+
T Consensus 70 i~~va~G~~ht~al~~~gg~v~~wG~n 96 (406)
T 4d9s_A 70 IVSVTCGADHTVAYSQSGMEVYSWGWG 96 (406)
T ss_dssp EEEEEECSSEEEEEETTTTEEEEEECC
T ss_pred EEEEEeCcceEEEEECCCCEEEEEcCC
Confidence 346789999888888777899999864
No 17
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=38.59 E-value=23 Score=18.78 Aligned_cols=14 Identities=7% Similarity=0.451 Sum_probs=10.7
Q ss_pred eEEEEEEcCCCcEE
Q 038783 58 EVALIVFSSRGRLY 71 (76)
Q Consensus 58 ~v~liv~~~~gk~~ 71 (76)
+.|+..|+++|+.|
T Consensus 6 ~~c~A~~s~Dg~wY 19 (54)
T 3s6w_A 6 DECFALYWEDNKFY 19 (54)
T ss_dssp CEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEE
Confidence 56788888888766
No 18
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=37.23 E-value=27 Score=24.76 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=19.8
Q ss_pred hccccCceEEEEEEcCCCcEEEccCC
Q 038783 51 LSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 51 Ls~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
.++-||...++++.. +|++|+|+++
T Consensus 110 v~i~~G~~h~~al~~-~G~v~~wG~n 134 (389)
T 3kci_A 110 VAVNSGGKHCLALSS-EGEVYSWGEA 134 (389)
T ss_dssp EEECTTCSEEEEEET-TSCEEEEECC
T ss_pred EEECcCCCeEEEEcC-CCCEEEEeCC
Confidence 567889888776654 7999999874
No 19
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=35.77 E-value=18 Score=25.69 Aligned_cols=26 Identities=4% Similarity=0.487 Sum_probs=18.4
Q ss_pred hccccCc-eEEEEEEcCCCcEEEccCC
Q 038783 51 LSVLCDA-EVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 51 Ls~Lcg~-~v~liv~~~~gk~~~f~s~ 76 (76)
..+-||. +-..++...+|.+|+|+.+
T Consensus 214 ~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 214 VDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp EEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred EEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 4566776 3455556678999999864
No 20
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=34.29 E-value=20 Score=25.43 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=19.0
Q ss_pred hccccCceEEEEEEcCCCcEEEccCC
Q 038783 51 LSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 51 Ls~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
..+-||....+++ ..+|++|+|+.+
T Consensus 349 ~~ia~G~~hs~al-t~~G~v~~wG~n 373 (423)
T 3mvd_K 349 VSVGCGEVCSYAV-TIDGKLYSWGSG 373 (423)
T ss_dssp EEEEEETTEEEEE-ETTSCEEEEECC
T ss_pred EEEEcCCCeEEEE-cCCCCEEEECCC
Confidence 3566887777666 568999999874
No 21
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=32.38 E-value=28 Score=18.85 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=10.9
Q ss_pred eEEEEEEcCCCcEE
Q 038783 58 EVALIVFSSRGRLY 71 (76)
Q Consensus 58 ~v~liv~~~~gk~~ 71 (76)
+.|+..|+.+|.+|
T Consensus 8 ~~c~A~~s~Dg~wY 21 (59)
T 1mhn_A 8 DKCSAIWSEDGCIY 21 (59)
T ss_dssp CEEEEECTTTSCEE
T ss_pred CEEEEEECCCCCEE
Confidence 57788888888876
No 22
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=31.72 E-value=4.8 Score=28.98 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=20.3
Q ss_pred hhhccccCceEEEEEEcCCCcEEEcc
Q 038783 49 YELSVLCDAEVALIVFSSRGRLYEYA 74 (76)
Q Consensus 49 ~ELs~Lcg~~v~liv~~~~gk~~~f~ 74 (76)
.+|.-.+|++|++||+++.|++|..+
T Consensus 137 ~~l~~~~G~~v~ViI~Dt~gr~~r~g 162 (254)
T 2phn_A 137 RRILELTGKRVGVIITDTNGRCFRRG 162 (254)
T ss_dssp HHHHHHHSCCCEEEEEEEEEETTEEE
T ss_pred HHHHHHHCCCEEEEEEcCCCchhhcc
Confidence 35557789999999999998766543
No 23
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=31.33 E-value=35 Score=24.96 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=19.9
Q ss_pred hhccccCceEEEEEEcCCCcEEEccCC
Q 038783 50 ELSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 50 ELs~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
=.++-||....+++.+ +|++|+|+++
T Consensus 69 i~~va~G~~Ht~alt~-~G~v~~wG~n 94 (473)
T 3of7_A 69 IISFAVGGMHTLALDE-ESNVWSWGCN 94 (473)
T ss_dssp EEEEEECSSEEEEEET-TCCEEEEECC
T ss_pred EEEEEeCCCeEEEEec-CCeEEEeECC
Confidence 3467788887777654 7999999875
No 24
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=30.66 E-value=34 Score=23.31 Aligned_cols=20 Identities=20% Similarity=0.755 Sum_probs=16.3
Q ss_pred ccccCceEEEEEEcCCCcEE
Q 038783 52 SVLCDAEVALIVFSSRGRLY 71 (76)
Q Consensus 52 s~Lcg~~v~liv~~~~gk~~ 71 (76)
+.-|.+.|-+++|+++.+.|
T Consensus 116 ~~~ceiKvLiLlYs~~k~af 135 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIF 135 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSE
T ss_pred CCCcceEEEEEEEcCCccee
Confidence 34588899999999987765
No 25
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=29.82 E-value=31 Score=20.70 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=12.8
Q ss_pred ceEEEEEEcCCCcEEE
Q 038783 57 AEVALIVFSSRGRLYE 72 (76)
Q Consensus 57 ~~v~liv~~~~gk~~~ 72 (76)
=+.|+..|+.||.+|-
T Consensus 14 Gd~C~A~ys~Dg~wYr 29 (88)
T 1g5v_A 14 GDKCSAIWSEDGCIYP 29 (88)
T ss_dssp SCEEEEECTTTCCEEE
T ss_pred CCEEEEEECCCCCEEE
Confidence 3678999999998873
No 26
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=28.74 E-value=35 Score=24.94 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=19.3
Q ss_pred hccccCceEEEEEEcCCCcEEEccCC
Q 038783 51 LSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 51 Ls~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
..|-||....+++ ..+|++|+|+.+
T Consensus 380 ~~Ia~G~~hs~al-~~~G~vy~wG~n 404 (473)
T 3of7_A 380 KSVAAGSHHSVAV-AQNGIAYSWGFG 404 (473)
T ss_dssp EEEEECSSEEEEE-ETTSCEEEEECC
T ss_pred EEEEeCCCeEEEE-eCCCcEEEeeCC
Confidence 3577888877776 457999999864
No 27
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=28.50 E-value=42 Score=23.83 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=18.7
Q ss_pred hccccCceEEEEEEcCCCcEEEccCC
Q 038783 51 LSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 51 Ls~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
..+-||....+++. .+|++|+|+.+
T Consensus 167 ~~ia~G~~hs~alt-~~G~v~~wG~n 191 (413)
T 1a12_A 167 VKVASGNDHLVMLT-ADGDLYTLGCG 191 (413)
T ss_dssp EEEEECSSEEEEEE-TTSCEEEEECC
T ss_pred EEEEecCceEEEEc-CCCCEEEeeCC
Confidence 35678888776665 57999999874
No 28
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=28.22 E-value=75 Score=18.25 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=27.3
Q ss_pred hchhhhhhhhhccccCceEEEEEEcCCCcEEEc
Q 038783 41 RNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY 73 (76)
Q Consensus 41 k~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~f 73 (76)
-..+.++..++-+..|+.|.++-..|-|.+..+
T Consensus 19 ~~~~~rrL~~mGl~pG~~V~Vi~~ap~ggPi~v 51 (83)
T 2lx9_A 19 SPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHI 51 (83)
T ss_dssp CHHHHHHHHHSSCCSSSEEEEEEECTTTCCEEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCCCcEEE
Confidence 356788899999999999999999987665543
No 29
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=27.79 E-value=41 Score=19.44 Aligned_cols=15 Identities=7% Similarity=0.432 Sum_probs=12.0
Q ss_pred ceEEEEEEcCCCcEE
Q 038783 57 AEVALIVFSSRGRLY 71 (76)
Q Consensus 57 ~~v~liv~~~~gk~~ 71 (76)
=++|+..|+.+|.+|
T Consensus 21 Gd~C~A~ys~Dg~wY 35 (77)
T 3pnw_C 21 GDECFALYWEDNKFY 35 (77)
T ss_dssp TCEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCCEE
Confidence 367888998888876
No 30
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=26.56 E-value=87 Score=17.62 Aligned_cols=41 Identities=10% Similarity=0.290 Sum_probs=31.4
Q ss_pred ceeeEEecCCCCcceehhhhhchhhhhhhhhccccCceEEEEEEcCCCcEEE
Q 038783 21 KIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYE 72 (76)
Q Consensus 21 Ki~ik~I~n~~~R~~Tf~KRk~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~ 72 (76)
+..|..|.++ ..+.++..++-+..|++|.++-..|-|.++.
T Consensus 12 ~~~I~~i~~~-----------~~~~~rL~~lGl~pG~~v~V~~~~p~~gpi~ 52 (81)
T 2k5l_A 12 TVKVVKLHGT-----------GALKRRIMDMGITRGCEIYIRKVAPLGDPIQ 52 (81)
T ss_dssp EEEEEEECSS-----------SHHHHHHHHHTCCTTCEEEEEEECTTSCCEE
T ss_pred EEEEEEEECC-----------HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEE
Confidence 3456666652 5678889999999999999999988665544
No 31
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=25.79 E-value=51 Score=18.25 Aligned_cols=21 Identities=5% Similarity=0.184 Sum_probs=16.9
Q ss_pred ccccCceEEEEEEcCCCcEEE
Q 038783 52 SVLCDAEVALIVFSSRGRLYE 72 (76)
Q Consensus 52 s~Lcg~~v~liv~~~~gk~~~ 72 (76)
+++..+..++++++.+|++..
T Consensus 16 ~il~~~~~~i~~~D~~g~i~~ 36 (118)
T 3fg8_A 16 NLYFQGGLGFMALDEDLRIIY 36 (118)
T ss_dssp CSSSCTTCEEEEECTTCBEEE
T ss_pred HHHhhCCceEEEECCCCeEEE
Confidence 567788889999999998654
No 32
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=25.28 E-value=43 Score=19.26 Aligned_cols=14 Identities=7% Similarity=0.451 Sum_probs=11.0
Q ss_pred eEEEEEEcCCCcEE
Q 038783 58 EVALIVFSSRGRLY 71 (76)
Q Consensus 58 ~v~liv~~~~gk~~ 71 (76)
++|+..|++||++|
T Consensus 14 ~~c~A~~s~Dg~wY 27 (78)
T 2d9t_A 14 DECFALYWEDNKFY 27 (78)
T ss_dssp CEEEEECTTTCCEE
T ss_pred CEEEEEECCCCCEE
Confidence 66888888888876
No 33
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=25.07 E-value=1.2e+02 Score=18.28 Aligned_cols=41 Identities=15% Similarity=0.361 Sum_probs=31.6
Q ss_pred ceeeEEecCCCCcceehhhhhchhhhhhhhhccccCceEEEEEEcCCCcEEE
Q 038783 21 KIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYE 72 (76)
Q Consensus 21 Ki~ik~I~n~~~R~~Tf~KRk~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~ 72 (76)
+..|..|.+ -..+.++..+|-+..|++|.|+-..|-|.++.
T Consensus 11 ~~~I~~I~~-----------~~~l~rrL~~lGl~pG~~V~Vv~~~P~ggpi~ 51 (105)
T 2k5f_A 11 RAEVTSVAA-----------EPAVRRRLMDLGLVRGAKLKVLRFAPLGDPIE 51 (105)
T ss_dssp EEEEEEECS-----------CHHHHHHHHHHTCSTTCEEEEEEECSSSCSEE
T ss_pred EEEEEEEEC-----------CHHHHHHHHHcCCCCCCEEEEEEECCCCCCEE
Confidence 455677766 25688899999999999999999888665443
No 34
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=24.89 E-value=93 Score=18.78 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=39.3
Q ss_pred ceeeEEecCCCCcceehhh----hhchhhhhhhhhccccCceEEEEEEcCCCcEEEccC
Q 038783 21 KIEIKRIENTTNRQVTFCK----RRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 75 (76)
Q Consensus 21 Ki~ik~I~n~~~R~~Tf~K----Rk~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~f~s 75 (76)
.+++|-=-+..-|+..+-+ .-..|..+...+.-|.+.++.+--.+++|.+..+.+
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInn 64 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTN 64 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCS
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecC
Confidence 3555544566666666653 456788999999998877766555588999988876
No 35
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=24.49 E-value=40 Score=23.86 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=20.1
Q ss_pred hccccCceEEEEEEcCCCcEEEccCC
Q 038783 51 LSVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 51 Ls~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
..+-||....+++...+|.+|.|+.+
T Consensus 245 ~~i~~g~~~~~~~~~~~g~v~~wG~n 270 (423)
T 3mvd_K 245 EAIWATNYCTFMRESQTQVIWATGLN 270 (423)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCcEEEEEECCCCeEEEEeCC
Confidence 35667777777777889999999854
No 36
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=24.33 E-value=87 Score=17.87 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=25.7
Q ss_pred chhhhhhhhhccccCceEEEEEEcCCCcEEE
Q 038783 42 NGLLKKAYELSVLCDAEVALIVFSSRGRLYE 72 (76)
Q Consensus 42 ~GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~ 72 (76)
..+.++..++-+..|++|.++-.+|-|.++.
T Consensus 25 ~~~~~rL~~mGl~pG~~V~V~~~~p~~gpi~ 55 (86)
T 2k4y_A 25 SKVRRKIMDMGIVRGTEIYIEGKAPMGDPIA 55 (86)
T ss_dssp SSHHHHHHHHTCCTTCEEEEEEECTTSCSEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEE
Confidence 5678889999999999999999888655443
No 37
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=22.27 E-value=75 Score=19.90 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=19.4
Q ss_pred hhhhhhhhccc----cCceEEEEEEcCCCcEEE
Q 038783 44 LLKKAYELSVL----CDAEVALIVFSSRGRLYE 72 (76)
Q Consensus 44 L~KKa~ELs~L----cg~~v~liv~~~~gk~~~ 72 (76)
|+..|.|..-. .+..|+.++...+|++|+
T Consensus 10 L~~~A~~a~~~ay~~s~f~VGAal~~~dG~i~~ 42 (130)
T 2z3g_A 10 LIERATATINSIPISEDYSVASAALSSDGRIFT 42 (130)
T ss_dssp HHHHHHHHHHHSCCCSSSCEEEEEEETTSCEEE
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEEEecCCeEEE
Confidence 55555444322 456788888888999986
No 38
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=22.00 E-value=74 Score=18.97 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=24.2
Q ss_pred hhhhhhhhhccccCceEEEEEEcCCCcEEEcc
Q 038783 43 GLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74 (76)
Q Consensus 43 GL~KKa~ELs~Lcg~~v~liv~~~~gk~~~f~ 74 (76)
.|-.-+.++.-..|++ .+++.+++|..+..+
T Consensus 36 ~l~~~~~~~~~~~~~~-~i~v~d~~G~~~a~~ 66 (131)
T 1p0z_A 36 RIKALIDPMRSFSDAT-YITVGDASGQRLYHV 66 (131)
T ss_dssp HHHHHHHHHHHHSCCS-EEEEEETTSBEEECS
T ss_pred HHHHHHHHHHHhcCCC-EEEEEcCCCcEEEec
Confidence 3556677788889999 788889999887654
No 39
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=21.70 E-value=1e+02 Score=18.95 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=28.3
Q ss_pred hhchhhhhhhhh-ccccCceEEEEEEcCCCcEEEccCC
Q 038783 40 RRNGLLKKAYEL-SVLCDAEVALIVFSSRGRLYEYANN 76 (76)
Q Consensus 40 Rk~GL~KKa~EL-s~Lcg~~v~liv~~~~gk~~~f~s~ 76 (76)
--..|..|+.++ .-|-+.++-|-=.+++|.+.+++|+
T Consensus 43 s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 43 PCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp HHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSH
T ss_pred cHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCH
Confidence 457899999998 5677776555555889999999874
No 40
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=20.04 E-value=54 Score=20.89 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.0
Q ss_pred cccCceEEEEEEcCCCcEEEcc
Q 038783 53 VLCDAEVALIVFSSRGRLYEYA 74 (76)
Q Consensus 53 ~Lcg~~v~liv~~~~gk~~~f~ 74 (76)
+|-.+++++|+.+.+|++..|.
T Consensus 27 ~ld~l~~GiivlD~dg~I~~~N 48 (129)
T 1mzu_A 27 EFDALPVGAIQVDGSGVIHRYN 48 (129)
T ss_dssp TGGGCSSEEEEEETTCBEEEEC
T ss_pred HHhccCceEEEECCCCeEEEEH
Confidence 4777889999999999998875
Done!