BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038785
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 159/318 (50%), Gaps = 31/318 (9%)
Query: 14 IPLIDLSALSATSTNIKNPDSTISD-LVQQIGNACKNWGFFQVINHGVPFDKRRSIENAA 72
+P IDL NI++ D I + ++++ A +WG +INHG+P D ++ A
Sbjct: 47 VPTIDLK-------NIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAG 99
Query: 73 RKFFEQPLXXXXX-XXXXXXXLVGYYDTEHTKNVR---DWKEVFDFVVESPCLMPASPEP 128
+FF + + Y ++ N +W++ F + P
Sbjct: 100 EEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY----------P 149
Query: 129 EDKEVAETYSQWPDYPPELREAFEEYAKEVEKLAYKLIELIALSLGLPANRFN---GFFK 185
E+K S WP P + EA EYAK + LA K+ + +++ LGL +R G +
Sbjct: 150 EEKR---DLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE 206
Query: 186 DQTTFARLNHYPPCPAPHLTLGVGRHKDSGALTILAQDDVGGLEVKKKSDGEWARVKPIP 245
+ ++N+YP CP P L LGV H D ALT + + V GL++ +G+W K +P
Sbjct: 207 ELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF--YEGKWVTAKCVP 264
Query: 246 NSYIINIGDCIQVWSNDAYETVEHRVVVNSEKERLSIPILFN-PSHYTMMKPLDELINEQ 304
+S +++IGD +++ SN Y+++ HR +VN EK R+S + P ++KPL E+++ +
Sbjct: 265 DSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVE 324
Query: 305 NPAKYRAYNWGKYFTSRL 322
+PAK+ + ++ +L
Sbjct: 325 SPAKFPPRTFAQHIEHKL 342
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 159/318 (50%), Gaps = 31/318 (9%)
Query: 14 IPLIDLSALSATSTNIKNPDSTISD-LVQQIGNACKNWGFFQVINHGVPFDKRRSIENAA 72
+P IDL NI++ D I + ++++ A +WG +INHG+P D ++ A
Sbjct: 46 VPTIDLK-------NIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAG 98
Query: 73 RKFFEQPLXXXXX-XXXXXXXLVGYYDTEHTKNVR---DWKEVFDFVVESPCLMPASPEP 128
+FF + + Y ++ N +W++ F + P
Sbjct: 99 EEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY----------P 148
Query: 129 EDKEVAETYSQWPDYPPELREAFEEYAKEVEKLAYKLIELIALSLGLPANRFN---GFFK 185
E+K S WP P + EA EYAK + LA K+ + +++ LGL +R G +
Sbjct: 149 EEKR---DLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE 205
Query: 186 DQTTFARLNHYPPCPAPHLTLGVGRHKDSGALTILAQDDVGGLEVKKKSDGEWARVKPIP 245
+ ++N+YP CP P L LGV H D ALT + + V GL++ +G+W K +P
Sbjct: 206 ELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLF--YEGKWVTAKCVP 263
Query: 246 NSYIINIGDCIQVWSNDAYETVEHRVVVNSEKERLSIPILFN-PSHYTMMKPLDELINEQ 304
+S +++IGD +++ SN Y+++ HR +VN EK R+S + P ++KPL E+++ +
Sbjct: 264 DSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVE 323
Query: 305 NPAKYRAYNWGKYFTSRL 322
+PAK+ + ++ +L
Sbjct: 324 SPAKFPPRTFAQHIEHKL 341
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 148/294 (50%), Gaps = 29/294 (9%)
Query: 41 QQIGNACKNWGFFQVINHGVPFDKRRSIENAARKFFEQPLXXXXXXXXXXXXLVGYYDTE 100
+ I +AC+NWGFF+++NHG+P + ++E + +++ L G +
Sbjct: 22 EXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEG---VQ 78
Query: 101 HTKNVRDWKEVFDFVVESPCLMPASPEPEDKEVAETYSQWPDYPPELREAFEEYAKEVEK 160
DW+ F F+ P S+ PD E RE ++AK +EK
Sbjct: 79 AEVTDXDWESTF-FLKHLPI--------------SNISEVPDLDEEYREVXRDFAKRLEK 123
Query: 161 LAYKLIELIALSLGLPANRF-NGFF--KDQTTFARLNHYPPCPAPHLTLGVGRHKDSGAL 217
LA +L++L+ +LGL N F+ K ++++YPPCP P L G+ H D+G +
Sbjct: 124 LAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGI 183
Query: 218 TILAQDD-VGGLEVKKKSDGEWARVKPIPNSYIINIGDCIQVWSNDAYETVEHRVVVNSE 276
+L QDD V GL++ K DG+W V P +S ++N+GD ++V +N Y++V HRV+ +
Sbjct: 184 ILLFQDDKVSGLQLLK--DGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKD 241
Query: 277 KERLSIPILFNPSHYTMMKPLDELIN---EQNPAKYRAYNWGKYFTSRLHSNLK 327
R S+ +NP ++ P L+ E+N Y + + Y +L++ LK
Sbjct: 242 GARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY--XKLYAGLK 293
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 157/318 (49%), Gaps = 31/318 (9%)
Query: 14 IPLIDLSALSATSTNIKNPDSTISD-LVQQIGNACKNWGFFQVINHGVPFDKRRSIENAA 72
+P IDL NI++ D I + ++++ A +WG +INHG+P D ++ A
Sbjct: 47 VPTIDLK-------NIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAG 99
Query: 73 RKFFEQPLXXXXX-XXXXXXXLVGYYDTEHTKNVR---DWKEVFDFVVESPCLMPASPEP 128
+FF + + Y ++ N +W++ F + P
Sbjct: 100 EEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY----------P 149
Query: 129 EDKEVAETYSQWPDYPPELREAFEEYAKEVEKLAYKLIELIALSLGLPANRFN---GFFK 185
E+K S WP P + EA EYAK + LA K+ + +++ LGL +R G +
Sbjct: 150 EEKR---DLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLE 206
Query: 186 DQTTFARLNHYPPCPAPHLTLGVGRHKDSGALTILAQDDVGGLEVKKKSDGEWARVKPIP 245
+ ++N+YP CP P L LGV H D ALT + + V GL++ +G+W K +P
Sbjct: 207 ELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQLF--YEGKWVTAKCVP 264
Query: 246 NSYIINIGDCIQVWSNDAYETVEHRVVVNSEKERLSIPILFN-PSHYTMMKPLDELINEQ 304
+S + +IGD +++ SN Y+++ HR +VN EK R+S + P ++KPL E ++ +
Sbjct: 265 DSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVE 324
Query: 305 NPAKYRAYNWGKYFTSRL 322
+PAK+ + ++ +L
Sbjct: 325 SPAKFPPRTFAQHIEHKL 342
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 126/300 (42%), Gaps = 22/300 (7%)
Query: 20 SALSATSTNIKNPDSTISDLVQQIGNACKNWGFFQVINHGVPFDKRRSIENAARKFFEQP 79
SA+ S ++ D T Q++G + + +GF + ++ + + + ++A+ FF P
Sbjct: 5 SAIDPVSFSLYAKDFT--RFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALP 62
Query: 80 LXXXXXXXXXXXXLVGY--YDTEHTKNVR--DWKEVFDFVVESPCLMPASPEPEDKEVAE 135
+ GY + E K D KE + + P P + A
Sbjct: 63 VETKKQYAGVKGGARGYIPFGVETAKGADHYDLKEFWHXGRDLP--------PGHRFRAH 114
Query: 136 TYSQ-WPDYPPELREAFEEYAKEVEKLAYKLIELIALSLGLPANRFNGFFKDQTTFARLN 194
WP P + ++ K++E IA L L + F +D + RL
Sbjct: 115 XADNVWPAEIPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLL 174
Query: 195 HYPPCPAPHLTLGVGRHKDSGALTILAQDDVGGLEVKKKSDGEWARVKPIPNSYIINIGD 254
HYPP P + G H D +T+L + GGLEV + DG+W + P P +INIGD
Sbjct: 175 HYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDR-DGQWLPINPPPGCLVINIGD 233
Query: 255 CIQVWSNDAYETVEHRVVVNSEKERLSIPILFNPS--HYTM---MKPLDELINEQNPAKY 309
++ +N+ + HR VVN ER +P P H+ +K L + +NP +Y
Sbjct: 234 XLERLTNNVLPSTVHR-VVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRY 292
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 133/315 (42%), Gaps = 42/315 (13%)
Query: 7 SVTEAEGIPLIDLSALSATSTNIKNPDSTISDLVQQIGNACKNWGFFQVINHGVPFDKRR 66
SV++A +P ID+S L K + QQI A ++ GFF +NHG+
Sbjct: 3 SVSKAN-VPKIDVSPLFGDDQAAK------MRVAQQIDAASRDTGFFYAVNHGI------ 49
Query: 67 SIENAARKFFEQPLXXXXXXXXXXXXLVGYYDTEHTKNVRDW--------KEVFDFVVES 118
+++ ++K E + Y+ EH VR K V F +
Sbjct: 50 NVQRLSQKTKE--FHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLN 107
Query: 119 PCLMPASPEPEDKEVAETYSQWPDYP--PELREAFEEYAKEVEKLAYKLIELIALSLGLP 176
P P P + K + WPD P ++ E+Y +V L+ L++ AL+LG
Sbjct: 108 PNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKE 167
Query: 177 ANRFNGFFKDQTTFAR--LNHYP---PCP-------APHLTLGVGRHKDSGALTILAQDD 224
N F FK T A L YP P P A L H+D +T+L Q +
Sbjct: 168 ENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN 227
Query: 225 VGGLEVKKKSDGEWARVKPIPNSYIINIGDCIQVWSNDAYETVEHRVV-VNSEKERLSIP 283
V L+V+ + + ++ Y+IN G + +N+ Y+ HRV VN+ ER S+P
Sbjct: 228 VQNLQVETAAG--YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNA--ERQSLP 283
Query: 284 ILFNPSHYTMMKPLD 298
N + +++ P D
Sbjct: 284 FFVNLGYDSVIDPFD 298
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 134/315 (42%), Gaps = 42/315 (13%)
Query: 7 SVTEAEGIPLIDLSALSATSTNIKNPDSTISDLVQQIGNACKNWGFFQVINHGVPFDKRR 66
SV++A +P ID+S L K + QQI A ++ GFF +NHG+
Sbjct: 3 SVSKAN-VPKIDVSPLFGDDQAAK------MRVAQQIDAASRDTGFFYAVNHGI------ 49
Query: 67 SIENAARKFFEQPLXXXXXXXXXXXXLVGYYDTEHTKNVRDW--------KEVFDFVVES 118
+++ ++K E + Y+ EH VR K V F +
Sbjct: 50 NVQRLSQKTKE--FHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLN 107
Query: 119 PCLMPASPEPEDKEVAETYSQWPDYP--PELREAFEEYAKEVEKLAYKLIELIALSLGLP 176
P P P + K + WPD P ++ E+Y +V L+ L++ AL+LG
Sbjct: 108 PNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKE 167
Query: 177 ANRFNGFFKDQTTFAR--LNHYP---PCP-------APHLTLGVGRHKDSGALTILAQDD 224
N F FK T A L YP P P A L H+D +T+L Q +
Sbjct: 168 ENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN 227
Query: 225 VGGLEVKKKSDGEWARVKPIPNSYIINIGDCIQVWSNDAYETVEHRVV-VNSEKERLSIP 283
V L+V+ + + ++ Y+IN G + +N+ Y+ HRV VN+E++ S+P
Sbjct: 228 VQNLQVETAAG--YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQ--SLP 283
Query: 284 ILFNPSHYTMMKPLD 298
N + +++ P D
Sbjct: 284 FFVNLGYDSVIDPFD 298
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 131 KEVAETYSQWP--DYPPELREAFEEYAKEVEKLAYKLIELI----------ALSLGLPAN 178
K++ E Y +P P LR Y ++ LA +L+E I S+ LP
Sbjct: 84 KDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETYSPDEIKAKFSIPLPEX 143
Query: 179 RFNGFFKDQTTFARLNHYPPCPAPHL--TLGVGRHKDSGALTILAQDDVGGLEVKKKSDG 236
N T R+ HYPP + H+D +T+L + GL+VK K DG
Sbjct: 144 IANS----HKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAK-DG 198
Query: 237 EWARVKPIPNSYIINIGDCIQVWSNDAYETVEHRVV----VNSEKERLSIPILFNP 288
W V + IINIGD +Q S+ + + HRV+ + K R+S+P+ +P
Sbjct: 199 SWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|3SQG|B Chain B, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|E Chain E, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|H Chain H, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
Length = 433
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 231 KKKSDGEWARVKPIPNSYIINIGDCIQVWSNDAYETVEHRVVVNSEKERLSIPI 284
K K+DG +K +P+ + + D +Q+W+ A + V VN R P+
Sbjct: 270 KAKADGVIKSLKKMPSGFTVYDADDMQLWNAYACTAMLAGVCVNCASMRAGQPV 323
>pdb|2WZX|A Chain A, Amp-C Beta-Lactamase (Pseudomonas Aeruginosa)in Complex
With Compound M-02
pdb|2WZZ|A Chain A, Amp-C Beta-Lactamase (Pseudomonas Aeruginosa)in Complex
With Compound M-03
Length = 371
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 1 EHRPKLSVTEAEGIPLIDLSALSATSTNIKNPDSTISDLVQQIGNACKNW 50
+H P L + +GI L+DL+ +A ++ PDS D QI + + W
Sbjct: 91 QHWPALQGSRFDGISLLDLATYTAGGLPLQFPDSVQKDQA-QIRDYYRQW 139
>pdb|3S1Y|A Chain A, Amp-C Beta-Lactamase (Pseudomonas Aeruginosa) In Complex
With A Beta- Lactamase Inhibitor
pdb|3S22|A Chain A, Amp-C Beta-Lactamase (Pseudomonas Aeruginosa) In Complex
With An Inhibitor
Length = 371
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 1 EHRPKLSVTEAEGIPLIDLSALSATSTNIKNPDSTISDLVQQIGNACKNW 50
+H P L + +GI L+DL+ +A ++ PDS D QI + + W
Sbjct: 91 QHWPALQGSRFDGISLLDLATYTAGGLPLQFPDSVQKDQA-QIRDYYRQW 139
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 158 VEKLAYKLIELIALSLGLPANRFNGFFKDQTTFARL--NHYPPCPAPHLTLGVGRHKDSG 215
+E+LA ++ L A PA R+ G +KD A+L + A T+G G K
Sbjct: 169 LERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARS 228
Query: 216 ALTIL 220
L IL
Sbjct: 229 QLLIL 233
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 158 VEKLAYKLIELIALSLGLPANRFNGFFKDQTTFARL--NHYPPCPAPHLTLGVGRHKDSG 215
+E+LA ++ L A PA R+ G +KD A+L + A T+G G K
Sbjct: 181 LERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARS 240
Query: 216 ALTIL 220
L IL
Sbjct: 241 QLLIL 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,104,383
Number of Sequences: 62578
Number of extensions: 475540
Number of successful extensions: 1250
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 17
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)