BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038786
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZSH|A Chain A, Structural Basis Of Gibberellin(Ga3)-Induced Della
Recognition By The Gibberellin Receptor
pdb|2ZSI|A Chain A, Structural Basis Of Gibberellin(Ga4)-Induced Della
Recognition By The Gibberellin Receptor
Length = 351
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 85/154 (55%), Gaps = 4/154 (2%)
Query: 5 NWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKS 63
+WL D + +FL GDSSGGN+ H VA RAG++ + V G I ++P F ER++S
Sbjct: 180 SWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTES 236
Query: 64 ELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGND 123
E +T+ D + LP D+ HP P P G ++G+ P L+ VAG D
Sbjct: 237 EKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLD 296
Query: 124 LIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYL 157
LI+D ++ Y E +KKAG++V+L+ FYL
Sbjct: 297 LIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 330
>pdb|3EBL|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3ED1|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga3
Length = 365
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Query: 15 RVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLT 74
RVFL GDSSGGN+ H VA RA V +V G I ++ F ER++SE +T
Sbjct: 190 RVFLSGDSSGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVT 246
Query: 75 LDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYE 134
L D + LP ++D+ HP P GP G + GL L+ V+G DL D ++ Y +
Sbjct: 247 LQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYAD 306
Query: 135 AMKKAGKDVELLVSPGMGHSFYL 157
A+++ G V+++ FYL
Sbjct: 307 ALREDGHHVKVVQCENATVGFYL 329
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 12/175 (6%)
Query: 3 ENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGQA--DVSPLRVAGAIPIHPGFLRQER 60
+ WLT DF F++G+S+GGN+ + RA ++ PL++ G + PGF +R
Sbjct: 150 RDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKR 209
Query: 61 SKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGP--PIDGLKLPPFLLC 118
+ SEL L ++D +LP+ +D+ H Y P + P D ++ + +
Sbjct: 210 TGSELRLANDSRLPTFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVM 269
Query: 119 VAG--NDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYLDKIAVDMDPNTAAQ 171
V G D + D +ME E ++K G DV G H+ L+ DP A Q
Sbjct: 270 VVGCHGDPMIDRQMELAERLEKKGVDVVAQFDVGGYHAVKLE------DPEKAKQ 318
>pdb|1QZ3|A Chain A, Crystal Structure Of Mutant M211sR215L OF CARBOXYLESTERASE
Est2 Complexed With Hexadecanesulfonate
pdb|1U4N|A Chain A, Crystal Structure Analysis Of The M211sR215L EST2 MUTANT
Length = 310
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 71/163 (43%), Gaps = 23/163 (14%)
Query: 5 NWLTE-----HVDFQRVFLIGDSSGGNV--VHEVAA--RAGQADVSPLRV---AGAIPIH 52
W+ E H+D R+ + GDS+GGN+ V + A R G A L + G P H
Sbjct: 133 QWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAH 192
Query: 53 PGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKL 112
P S EN + LLT M FL L + HP+ P+ P + GL
Sbjct: 193 P-------PASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPV--LYPDLSGL-- 241
Query: 113 PPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSF 155
PP + A D ++D Y EA+ KAG VE+ + H F
Sbjct: 242 PPAYIATAQYDPLRDVGKLYAEALNKAGVKVEIENFEDLIHGF 284
>pdb|2HM7|A Chain A, Crystal Structure Analysis Of The G84s Est2 Mutant
Length = 310
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 23/163 (14%)
Query: 5 NWLTE-----HVDFQRVFLIGDSSGGNV--VHEVAA--RAGQADVSPLRV---AGAIPIH 52
W+ E H+D R+ + GDS+GGN+ V + A R G A L + G P H
Sbjct: 133 QWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAH 192
Query: 53 PGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKL 112
P S EN + LLT M+ F L + HP+ P+ P + GL
Sbjct: 193 P-------PASIEENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPV--LYPDLSGL-- 241
Query: 113 PPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSF 155
PP + A D ++D Y EA+ KAG VE+ + H F
Sbjct: 242 PPAYIATAQYDPLRDVGKLYAEALNKAGVKVEIENFEDLIHGF 284
>pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophilic Carboxylesterase
Est2 From Alicyclobacillus Acidocaldarius
Length = 310
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 5 NWLTE-----HVDFQRVFLIGDSSGGNV--VHEVAA--RAGQADVSPLRV---AGAIPIH 52
W+ E H+D R+ + GDS+GGN+ V + A R G A L + G P H
Sbjct: 133 QWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAH 192
Query: 53 PGFLRQERSKSELENPQSPLLT----LDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPID 108
P S EN + LLT L D++L+ L HP+ P+ P +
Sbjct: 193 P-------PASIEENAEGYLLTGGXXLWFRDQYLNSLEELT----HPWFSPV--LYPDLS 239
Query: 109 GLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSF 155
GL PP + A D ++D Y EA+ KAG VE+ + H F
Sbjct: 240 GL--PPAYIATAQYDPLRDVGKLYAEALNKAGVKVEIENFEDLIHGF 284
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 21 DSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSK--SELENPQSPLLTLDMV 78
+ S +V V ARA +AD+S + +A A + P F E K E+P S ++ L+ +
Sbjct: 456 NQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFI 515
Query: 79 DKFLSFALPLNSDKG 93
L F N KG
Sbjct: 516 LFALFFPTEFNRIKG 530
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 21 DSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSK--SELENPQSPLLTLDMV 78
+ S +V V ARA +AD+S + +A A + P F E K E+P S ++ L+ +
Sbjct: 456 NQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFI 515
Query: 79 DKFLSFALPLNSDKG 93
L F N KG
Sbjct: 516 LFALFFPTEFNRIKG 530
>pdb|2YH2|A Chain A, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|B Chain B, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|C Chain C, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|D Chain D, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|3ZWQ|A Chain A, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
pdb|3ZWQ|B Chain B, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
Length = 313
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 10/155 (6%)
Query: 4 NNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQ---ER 60
+N+ VD ++ + GDS+GGN+ A A D V + I+P
Sbjct: 139 DNYDKLGVDNGKIAVAGDSAGGNLAAVTAIMA--RDRGESFVKYQVLIYPAVNLTGSPTV 196
Query: 61 SKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVA 120
S+ E P+ +LT D++ F D PY P+ D LPP L+ A
Sbjct: 197 SRVEYSGPEYVILTADLMAWFGRQYFSKPQDALSPYASPIFA-----DLSNLPPALVITA 251
Query: 121 GNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSF 155
D ++D Y +K G + G+ H F
Sbjct: 252 EYDPLRDEGELYAHLLKTRGVRAVAVRYNGVIHGF 286
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 7 LTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAI 49
L EH+D + V L+G S GG V AR G A V+ L + GA+
Sbjct: 79 LIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 7 LTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAI 49
L EH+D + V L+G S GG V AR G A V+ L + GA+
Sbjct: 79 LIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 7 LTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAI 49
L EH+D + V L+G S GG V AR G A V+ L + GA+
Sbjct: 79 LIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 7 LTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAI 49
L EH+D + V L+G S GG V AR G A V+ L + GA+
Sbjct: 79 LIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 7 LTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAI 49
L EH+D + V L+G S GG V AR G A V+ L + GA+
Sbjct: 79 LIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAV 121
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 4 NNWLTEH-----VDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQ 58
W+ E+ +D ++F+ GDS+GGN+ V+ A D + I I+P
Sbjct: 137 TKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMA--RDSGEDFIKHQILIYPVVNFV 194
Query: 59 ERSKSELENPQSPLLTLD--MVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFL 116
+ S LE + L LD ++ F DK +P + D LPP L
Sbjct: 195 APTPSLLEFGEG-LWILDQKIMSWFSEQYFSREEDKFNPLASVIFA-----DLENLPPAL 248
Query: 117 LCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSF 155
+ A D ++D + + +++AG + ++ G+ H F
Sbjct: 249 IITAEYDPLRDEGEVFGQMLRRAGVEASIVRYRGVLHGF 287
>pdb|1LZK|A Chain A, Bacterial Heroin Esterase Complex With Transition State
Analog Dimethylarsenic Acid
Length = 323
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 23/180 (12%)
Query: 11 VDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQS 70
+D R+ + G S+GG + +A R G +P+ FL LE
Sbjct: 149 IDPSRIAVGGQSAGGGLAAGTVLKA--------RDEGVVPVAFQFLEIPELDDRLET--- 197
Query: 71 PLLTLDMVDKFL----SFALPLNSDKGHPYTCPMGP-----AGPP--IDGLKLPPFLLCV 119
+ + VD L + L G Y+ P P A P D LPP L
Sbjct: 198 -VSXTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLST 256
Query: 120 AGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYLDKIAVDMDPNTAAQTCGLFQGI 179
D ++D +EY + +AG VEL PG H L A + A + +G+
Sbjct: 257 XELDPLRDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGL 316
>pdb|1LZL|A Chain A, Bacterial Heroin Esterase
Length = 323
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 23/180 (12%)
Query: 11 VDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSELENPQS 70
+D R+ + G S+GG + +A R G +P+ FL LE
Sbjct: 149 IDPSRIAVGGQSAGGGLAAGTVLKA--------RDEGVVPVAFQFLEIPELDDRLET--- 197
Query: 71 PLLTLDMVDKFL----SFALPLNSDKGHPYTCPMGP-----AGPP--IDGLKLPPFLLCV 119
+ + VD L + L G Y+ P P A P D LPP L
Sbjct: 198 -VSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLST 256
Query: 120 AGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYLDKIAVDMDPNTAAQTCGLFQGI 179
D ++D +EY + +AG VEL PG H L A + A + +G+
Sbjct: 257 MELDPLRDEGIEYALRLLQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGL 316
>pdb|1JKM|B Chain B, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
pdb|1JKM|A Chain A, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
Length = 361
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 6 WLTEH---VDFQRVFLIGDSSGGNVVHE---VAARAGQADVSPLRVAGAIPIHPGF-LRQ 58
W+ EH + V + G+S GGN+ +A R G+ D A I G+
Sbjct: 174 WVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDH 233
Query: 59 ERSKSEL----ENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPP 114
ER +EL EN + M ++ P P P + + GL PP
Sbjct: 234 ERRLTELPSLVENDGYFIENGGMALLVRAYD-PTGEHAEDPIAWPYFASEDELRGL--PP 290
Query: 115 FLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGH 153
F++ V D ++D + + + +AG DV V+ G+ H
Sbjct: 291 FVVAVNELDPLRDEGIAFARRLARAGVDVAARVNIGLVH 329
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 7 LTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQE 59
L EH+D + L G S+GG V R G A V+ + A+P P L+ E
Sbjct: 79 LIEHLDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVP--PLMLKTE 129
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 101 GPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLV 147
G A L+L +L V G DL + T + +A+K+AGK+V L V
Sbjct: 39 GLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGKEVLLEV 85
>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (
Tp53i3,Pig3)
Length = 354
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 6 WLTEHVDFQRVFLIGDSSGGN--VVHEVAARAGQADVSPLRVAGAIPI 51
WLT FQ + L+G+ G+ ++H + G A + R+AGAIP+
Sbjct: 147 WLTA---FQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPL 191
>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|B Chain B, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|C Chain C, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|D Chain D, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|E Chain E, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
Length = 338
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 6 WLTEHVDFQRVFLIGDSSGGN--VVHEVAARAGQADVSPLRVAGAIPI 51
WLT FQ + L+G+ G+ ++H + G A + R+AGAIP+
Sbjct: 131 WLTA---FQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPL 175
>pdb|3D3N|A Chain A, Crystal Structure Of LipaseESTERASE (LP_2923) FROM
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr108
pdb|3D3N|B Chain B, Crystal Structure Of LipaseESTERASE (LP_2923) FROM
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr108
Length = 284
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 5 NWLT-----EHVDFQRVFLIGDSSGGNVV 28
+W+T HVD QR+ L G S+GG+VV
Sbjct: 94 DWITTQASAHHVDCQRIILAGFSAGGHVV 122
>pdb|3BXP|A Chain A, Crystal Structure Of A Putative Carboxylesterase (lp_2923)
From Lactobacillus Plantarum Wcfs1 At 1.70 A Resolution
pdb|3BXP|B Chain B, Crystal Structure Of A Putative Carboxylesterase (lp_2923)
From Lactobacillus Plantarum Wcfs1 At 1.70 A Resolution
Length = 277
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Query: 5 NWLT-----EHVDFQRVFLIGDSSGGNVV 28
+W+T HVD QR+ L G S+GG+VV
Sbjct: 95 DWITTQASAHHVDCQRIILAGFSAGGHVV 123
>pdb|1WP5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Dna
Topoisomerase Iv
Length = 323
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 106 PIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMK 137
PI+ +L + L V N +K TE+++Y+A +
Sbjct: 99 PINDFELNGYFLFVTRNGXVKKTELKHYKAQR 130
>pdb|2BH1|A Chain A, X-Ray Structure Of The General Secretion Pathway Complex
Of The N-Terminal Domain Of Epse And The Cytosolic
Domain Of Epsl Of Vibrio Cholerae
pdb|2BH1|B Chain B, X-Ray Structure Of The General Secretion Pathway Complex
Of The N-Terminal Domain Of Epse And The Cytosolic
Domain Of Epsl Of Vibrio Cholerae
Length = 250
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 6 WLTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAG-----AIPIHPGFLRQ 58
WL + Q V G +G +HE+ + A Q V L A ++ I PG RQ
Sbjct: 19 WLVWSAEQQEVIASGQVAGWEALHEIESYADQRSVVVLLAASDLILTSVEIPPGASRQ 76
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 101 GPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLV 147
G A + L + +L V G DL T E +A+KK GK+V L V
Sbjct: 40 GLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
>pdb|1YF5|L Chain L, Cyto-Epsl: The Cytoplasmic Domain Of Epsl, An Inner
Membrane Component Of The Type Ii Secretion System Of
Vibrio Cholerae
Length = 254
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 6 WLTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAG-----AIPIHPGFLRQ 58
WL + Q V G +G +HE+ + A Q V L A ++ I PG RQ
Sbjct: 23 WLVWSAEQQEVIASGQVAGWEALHEIESYADQRSVVVLLAASDLILTSVEIPPGASRQ 80
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 116 LLCVAGNDLIKDTEMEYYEAMKKAGKDVELLV 147
+L V G DL T E +A+KK GK+V L V
Sbjct: 128 ILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
>pdb|1W97|L Chain L, Cyto-Epsl: The Cytoplasmic Domain Of Epsl, An Inner
Membrane Component Of The Type Ii Secretion System Of
Vibrio Cholerae
Length = 246
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 6 WLTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAG-----AIPIHPGFLRQ 58
WL + Q V G +G +HE+ + A Q V L A ++ I PG RQ
Sbjct: 23 WLVWSAEQQEVIASGQVAGWEALHEIESYADQRSVVVLLAASDLILTSVEIPPGASRQ 80
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 101 GPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLV 147
G A + L + +L V G DL T E +A+KK GK+V L V
Sbjct: 36 GLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 101 GPAGPPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLV 147
G A + L + +L V G DL T E +A+KK GK+V L V
Sbjct: 36 GLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|3D0K|A Chain A, Crystal Structure Of The Lpqc, Poly(3-Hydroxybutyrate)
Depolymerase From Bordetella Parapertussis
pdb|3D0K|B Chain B, Crystal Structure Of The Lpqc, Poly(3-Hydroxybutyrate)
Depolymerase From Bordetella Parapertussis
Length = 304
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 22/153 (14%)
Query: 8 TEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIPIHPGFLRQERSKSEL-E 66
E D ++V+L G S+GG VH + + A + A +PG+ + E
Sbjct: 134 AEIADCEQVYLFGHSAGGQFVHRLXSSQPHAPFHAVTAA-----NPGWYTLPTFEHRFPE 188
Query: 67 NPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAGPPIDGLKLPPFLLCVAGNDLIK 126
LT D + + L++ P T G D LP +
Sbjct: 189 GLDGVGLTEDHLARLLAY----------PXTILAGDQDIATDDPNLPSEPAALRQGPHRY 238
Query: 127 DTEMEYYEAMKKAGKD------VELLVSPGMGH 153
YYEA ++A +L V PG+GH
Sbjct: 239 ARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGH 271
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 7 LTEHVDFQRVFLIGDSSGGNVVHEVAARAGQADVSPLRVAGAIP 50
LTE +D + IG S+GG V ARA V+ + A+P
Sbjct: 81 LTEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVP 124
>pdb|1MOE|A Chain A, The Three-Dimensional Structure Of An Engineered Scfv
T84.66 Dimer Or Diabody In Vl To Vh Linkage.
pdb|1MOE|B Chain B, The Three-Dimensional Structure Of An Engineered Scfv
T84.66 Dimer Or Diabody In Vl To Vh Linkage
Length = 240
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 116 LLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYLDK------IAVDMDPNTA 169
L C A IKDT M + + + G + + P G+S Y+ K I D NTA
Sbjct: 139 LSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTA 198
>pdb|1J05|H Chain H, The Crystal Structure Of Anti-carcinoembryonic Antigen
Monoclonal Antibody T84.66 Fv Fragment
pdb|1J05|B Chain B, The Crystal Structure Of Anti-carcinoembryonic Antigen
Monoclonal Antibody T84.66 Fv Fragment
Length = 121
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 116 LLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVSPGMGHSFYLDK------IAVDMDPNTA 169
L C A IKDT M + + + G + + P G+S Y+ K I D NTA
Sbjct: 20 LSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTA 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,060,481
Number of Sequences: 62578
Number of extensions: 257392
Number of successful extensions: 654
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 43
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)