BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038788
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 108/243 (44%), Gaps = 13/243 (5%)
Query: 46 LTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALG 105
++ C L L + +N F +PF L + S + + I N++S I+ L L
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 106 VEFNQLAVTI----LKSLQMLFLHENILQGTIPCSL-GNLTMLTQRLLEVNDLLGNIPPS 160
+ NQ I LKSLQ L L EN G IP L G LT L N G +PP
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 161 IGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLK-NLISL 219
G+C L L N SG +P + G P + L +L++L
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 370
Query: 220 DISSNMFSSEISTTLGCT----SLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSG 275
D+SSN FS I L C +L+ L +Q+N F G IP TLS+ + L LS N LSG
Sbjct: 371 DLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 276 HIP 278
IP
Sbjct: 430 TIP 432
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 18/228 (7%)
Query: 52 LGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQL 111
L VL L N F G LP SL NLS ++ + + +N S G L
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS----------------GPILPNL 385
Query: 112 AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLT 171
+LQ L+L N G IP +L N + L L N L G IP S+G+ L L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 172 TRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLISLDISSNMFSSEIS 231
N G +P++L + T G P+ + NL + +S+N + EI
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 232 TTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278
+G +L L + +NSF G+IP+ L +S+ LDL+ N +G IP
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 36/262 (13%)
Query: 52 LGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQL 111
L L L N+F G +P L+ T+TG+ + N +P + L +L + N
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 112 AVTI-------LKSLQMLFLHENILQGTIPCSLGNLTM---------------------- 142
+ + ++ L++L L N G +P SL NL+
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 143 -----LTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXX 197
L + L+ N G IPP++ NC L+ L N SGT+P L + +
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKL 446
Query: 198 XXXXXXGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPST 256
G P E+ +K L +L + N + EI + L CT+L ++ + +N G IP
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 257 LSSLKSITELDLSCNNLSGHIP 278
+ L+++ L LS N+ SG+IP
Sbjct: 507 IGRLENLAILKLSNNSFSGNIP 528
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 121/301 (40%), Gaps = 35/301 (11%)
Query: 6 NIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGA 65
N SG + + G L L L L N L +L ++ L L+LD N G
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE------TLILDFNDLTGE 478
Query: 66 LPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI------LKSL 119
+P L+N T + I++ NN+++ IP I L NL L + N + I +SL
Sbjct: 479 IPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 120 QMLFLHENILQGTIPCSL--------GNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLT 171
L L+ N+ GTIP ++ N + + ND + GN +
Sbjct: 538 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 597
Query: 172 TRK-NKPSGTMPRQLPRIITXXXXX------------XXXXXXXXGHFPAEVGKLKNLIS 218
+ + N+ S P + + G+ P E+G + L
Sbjct: 598 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 657
Query: 219 LDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHI 277
L++ N S I +G L L + N G IP +S+L +TE+DLS NNLSG I
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 278 P 278
P
Sbjct: 718 P 718
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 209 EVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDL 268
+V + NL LD+SSN FS+ I C++L++L + N G +S+ + L++
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 269 SCNNLSGHIP 278
S N G IP
Sbjct: 252 SSNQFVGPIP 261
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 6 NIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGA 65
N+ SG + G + L LNLG N++ ++ + + L +L L +N+ G
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE------VGDLRGLNILDLSSNKLDGR 692
Query: 66 LPFSLANLSTTMTGIAIGNNQISCFIPD 93
+P +++ L T +T I + NN +S IP+
Sbjct: 693 IPQAMSAL-TMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 108/243 (44%), Gaps = 13/243 (5%)
Query: 46 LTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALG 105
++ C L L + +N F +PF L + S + + I N++S I+ L L
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 106 VEFNQLAVTI----LKSLQMLFLHENILQGTIPCSL-GNLTMLTQRLLEVNDLLGNIPPS 160
+ NQ I LKSLQ L L EN G IP L G LT L N G +PP
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 161 IGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLK-NLISL 219
G+C L L N SG +P + G P + L +L++L
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373
Query: 220 DISSNMFSSEISTTLGCT----SLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSG 275
D+SSN FS I L C +L+ L +Q+N F G IP TLS+ + L LS N LSG
Sbjct: 374 DLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 276 HIP 278
IP
Sbjct: 433 TIP 435
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 18/228 (7%)
Query: 52 LGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQL 111
L VL L N F G LP SL NLS ++ + + +N S G L
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS----------------GPILPNL 388
Query: 112 AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLT 171
+LQ L+L N G IP +L N + L L N L G IP S+G+ L L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 172 TRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEVGKLKNLISLDISSNMFSSEIS 231
N G +P++L + T G P+ + NL + +S+N + EI
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 232 TTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278
+G +L L + +NSF G+IP+ L +S+ LDL+ N +G IP
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 36/262 (13%)
Query: 52 LGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQL 111
L L L N+F G +P L+ T+TG+ + N +P + L +L + N
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 112 AVTI-------LKSLQMLFLHENILQGTIPCSLGNLTM---------------------- 142
+ + ++ L++L L N G +P SL NL+
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 143 -----LTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXX 197
L + L+ N G IPP++ NC L+ L N SGT+P L + +
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKL 449
Query: 198 XXXXXXGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPST 256
G P E+ +K L +L + N + EI + L CT+L ++ + +N G IP
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 257 LSSLKSITELDLSCNNLSGHIP 278
+ L+++ L LS N+ SG+IP
Sbjct: 510 IGRLENLAILKLSNNSFSGNIP 531
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 121/301 (40%), Gaps = 35/301 (11%)
Query: 6 NIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGA 65
N SG + + G L L L L N L +L ++ L L+LD N G
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE------TLILDFNDLTGE 481
Query: 66 LPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI------LKSL 119
+P L+N T + I++ NN+++ IP I L NL L + N + I +SL
Sbjct: 482 IPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 120 QMLFLHENILQGTIPCSL--------GNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLT 171
L L+ N+ GTIP ++ N + + ND + GN +
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600
Query: 172 TRK-NKPSGTMPRQLPRIIT------------XXXXXXXXXXXXXGHFPAEVGKLKNLIS 218
+ + N+ S P + + G+ P E+G + L
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660
Query: 219 LDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHI 277
L++ N S I +G L L + N G IP +S+L +TE+DLS NNLSG I
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 278 P 278
P
Sbjct: 721 P 721
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 209 EVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDL 268
+V + NL LD+SSN FS+ I C++L++L + N G +S+ + L++
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 269 SCNNLSGHIP 278
S N G IP
Sbjct: 255 SSNQFVGPIP 264
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 6 NIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGA 65
N+ SG + G + L LNLG N++ ++ + + L +L L +N+ G
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE------VGDLRGLNILDLSSNKLDGR 695
Query: 66 LPFSLANLSTTMTGIAIGNNQISCFIPD 93
+P +++ L T +T I + NN +S IP+
Sbjct: 696 IPQAMSAL-TMLTEIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 86/219 (39%), Gaps = 32/219 (14%)
Query: 91 IPDGIANLVNLNALGVE-FNQL------AVTILKSLQMLFLHENILQGTIPCSLGNLTML 143
IP +ANL LN L + N L A+ L L L++ + G IP L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 144 TQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXX 203
N L G +PPSI + NL+ +T N+ SG +P
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 204 GHFPAEVGKLKNLISLDISSNMFSSEISTTLG------------------------CTSL 239
G P L NL +D+S NM + S G +L
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 240 EYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278
L +++N G++P L+ LK + L++S NNL G IP
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 28/132 (21%)
Query: 55 LVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANL---------------- 98
+ D NR GA+P S + S T + I N+++ IP ANL
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213
Query: 99 ------------VNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQR 146
++L + F+ V + K+L L L N + GT+P L L L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 147 LLEVNDLLGNIP 158
+ N+L G IP
Sbjct: 274 NVSFNNLCGEIP 285
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 32/111 (28%)
Query: 5 RNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGG 64
RN+ G S+ FG +N ++L KN+ L D + G
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNS-----------------------LAFDLGKVG- 241
Query: 65 ALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI 115
LS + G+ + NN+I +P G+ L L++L V FN L I
Sbjct: 242 --------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 108/248 (43%), Gaps = 43/248 (17%)
Query: 35 WTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDG 94
++ N L IT L N TKL ++++ N+ P LANL T +TG+ + NNQI+ P
Sbjct: 70 FSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP-- 124
Query: 95 IANLVNLNALGVEFNQL----AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEV 150
+ NL NLN L + N + A++ L SLQ L N + P L NLT L +RL
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTL-ERLDIS 181
Query: 151 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEV 210
++ + +I + NL L N+ S P +
Sbjct: 182 SNKVSDI-SVLAKLTNLESLIATNNQISDITP---------------------------L 213
Query: 211 GKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSC 270
G L NL L ++ N +I T T+L L + +N P LS L +TEL L
Sbjct: 214 GILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 270
Query: 271 NNLSGHIP 278
N +S P
Sbjct: 271 NQISNISP 278
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 107/248 (43%), Gaps = 44/248 (17%)
Query: 35 WTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDG 94
++ N L IT L N TKL ++++ N+ P LANL T +TG+ + NNQI+ P
Sbjct: 75 FSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP-- 129
Query: 95 IANLVNLNALGVEFNQL----AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEV 150
+ NL NLN L + N + A++ L SLQ L Q T L NLT L +RL
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN---QVTDLKPLANLTTL-ERLDIS 185
Query: 151 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEV 210
++ + +I + NL L N+ S P +
Sbjct: 186 SNKVSDI-SVLAKLTNLESLIATNNQISDITP---------------------------L 217
Query: 211 GKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSC 270
G L NL L ++ N +I T T+L L + +N P LS L +TEL L
Sbjct: 218 GILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274
Query: 271 NNLSGHIP 278
N +S P
Sbjct: 275 NQISNISP 282
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 107/248 (43%), Gaps = 44/248 (17%)
Query: 35 WTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDG 94
++ N L IT L N TKL ++++ N+ P LANL T +TG+ + NNQI+ P
Sbjct: 74 FSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP-- 128
Query: 95 IANLVNLNALGVEFNQL----AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEV 150
+ NL NLN L + N + A++ L SLQ L Q T L NLT L +RL
Sbjct: 129 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN---QVTDLKPLANLTTL-ERLDIS 184
Query: 151 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEV 210
++ + +I + NL L N+ S P +
Sbjct: 185 SNKVSDI-SVLAKLTNLESLIATNNQISDITP---------------------------L 216
Query: 211 GKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSC 270
G L NL L ++ N +I T T+L L + +N P LS L +TEL L
Sbjct: 217 GILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 273
Query: 271 NNLSGHIP 278
N +S P
Sbjct: 274 NQISNISP 281
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 107/248 (43%), Gaps = 44/248 (17%)
Query: 35 WTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDG 94
++ N L IT L N TKL ++++ N+ P LANL T +TG+ + NNQI+ P
Sbjct: 70 FSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP-- 124
Query: 95 IANLVNLNALGVEFNQL----AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEV 150
+ NL NLN L + N + A++ L SLQ L Q T L NLT L +RL
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN---QVTDLKPLANLTTL-ERLDIS 180
Query: 151 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEV 210
++ + +I + NL L N+ S P +
Sbjct: 181 SNKVSDI-SVLAKLTNLESLIATNNQISDITP---------------------------L 212
Query: 211 GKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSC 270
G L NL L ++ N +I T T+L L + +N P LS L +TEL L
Sbjct: 213 GILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 271 NNLSGHIP 278
N +S P
Sbjct: 270 NQISNISP 277
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 107/248 (43%), Gaps = 44/248 (17%)
Query: 35 WTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDG 94
++ N L IT L N TKL ++++ N+ P LANL T +TG+ + NNQI+ P
Sbjct: 70 FSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP-- 124
Query: 95 IANLVNLNALGVEFNQL----AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEV 150
+ NL NLN L + N + A++ L SLQ L Q T L NLT L +RL
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGN---QVTDLKPLANLTTL-ERLDIS 180
Query: 151 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEV 210
++ + +I + NL L N+ S P +
Sbjct: 181 SNKVSDI-SVLAKLTNLESLIATNNQISDITP---------------------------L 212
Query: 211 GKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSC 270
G L NL L ++ N +I T T+L L + +N P LS L +TEL L
Sbjct: 213 GILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 269
Query: 271 NNLSGHIP 278
N +S P
Sbjct: 270 NQISNISP 277
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 108/251 (43%), Gaps = 71/251 (28%)
Query: 35 WTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDG 94
++ N L IT L N TKL ++++ N+ P LANL T +TG+ + NNQI+ P
Sbjct: 70 FSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP-- 124
Query: 95 IANLVNLNALGVEFNQL----AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEV 150
+ NL NLN L + N + A++ L SLQ L N +V
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSN---------------------QV 163
Query: 151 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEV 210
DL + N L L NK S + +
Sbjct: 164 TDL-----KPLANLTTLERLDISSNKVSDI---------------------------SVL 191
Query: 211 GKLKNLISLDISSNMFSSEISTTLGC-TSLEYLCMQDNSF--IGSIPSTLSSLKSITELD 267
KL NL SL I++N S+I T LG T+L+ L + N IG TL+SL ++T+LD
Sbjct: 192 AKLTNLESL-IATNNQISDI-TPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLD 245
Query: 268 LSCNNLSGHIP 278
L+ N +S P
Sbjct: 246 LANNQISNLAP 256
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 108/251 (43%), Gaps = 71/251 (28%)
Query: 35 WTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDG 94
++ N L IT L N TKL ++++ N+ P LANL T +TG+ + NNQI+ P
Sbjct: 70 FSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANL-TNLTGLTLFNNQITDIDP-- 124
Query: 95 IANLVNLNALGVEFNQL----AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEV 150
+ NL NLN L + N + A++ L SLQ L N +V
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSN---------------------QV 163
Query: 151 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITXXXXXXXXXXXXXGHFPAEV 210
DL + N L L NK S + +
Sbjct: 164 TDL-----KPLANLTTLERLDISSNKVSDI---------------------------SVL 191
Query: 211 GKLKNLISLDISSNMFSSEISTTLGC-TSLEYLCMQDNSF--IGSIPSTLSSLKSITELD 267
KL NL SL I++N S+I T LG T+L+ L + N IG TL+SL ++T+LD
Sbjct: 192 AKLTNLESL-IATNNQISDI-TPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLD 245
Query: 268 LSCNNLSGHIP 278
L+ N +S P
Sbjct: 246 LANNQISNLAP 256
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLST 75
F GL L+WLNL N L T + + T+LG L L N+ +LP + + T
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAG------VFDDLTELGTLGLANNQL-ASLPLGVFDHLT 107
Query: 76 TMTGIAIGNNQISCFIPDGIAN-LVNLNALGVEFNQL------AVTILKSLQMLFLHENI 128
+ + +G NQ+ +P G+ + L L L + NQL A L +LQ L L N
Sbjct: 108 QLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 129 LQGTIP 134
LQ ++P
Sbjct: 167 LQ-SVP 171
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLST 75
F GL L+WLNL N L T + + T+LG L L N+ +LP + + T
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAG------VFDDLTELGTLGLANNQL-ASLPLGVFDHLT 107
Query: 76 TMTGIAIGNNQISCFIPDGIAN-LVNLNALGVEFNQL------AVTILKSLQMLFLHENI 128
+ + +G NQ+ +P G+ + L L L + NQL A L +LQ L L N
Sbjct: 108 QLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 129 LQGTIP 134
LQ ++P
Sbjct: 167 LQ-SVP 171
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 55 LVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT 114
L L++N+ +LP + + T +T +++ NQI +PDG+ F++L
Sbjct: 33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGV------------FDKLT-- 76
Query: 115 ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153
L +L+LHEN LQ LT L + L+ N L
Sbjct: 77 ---KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 21/164 (12%)
Query: 1 MNTIRNIFSGKVSI-NFGGLQ---NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLV 56
+N+I I + I + G+Q N+ +L LG N L H I+ L T L L+
Sbjct: 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--------HDISALKELTNLTYLI 91
Query: 57 LDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIAN-LVNLNALGVEFNQL---- 111
L N+ +LP + + T + + + NQ+ +PDG+ + L NL L + NQL
Sbjct: 92 LTGNQL-QSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 112 --AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153
L +L L L N LQ LT L L N L
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 25/119 (21%)
Query: 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLST 75
F L NL++LNL N L + LTN T+L L N+ +LP + + T
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELD---LSYNQL-QSLPEGVFDKLT 181
Query: 76 TMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIP 134
+ + + NQ+ +PDG+ F++L SLQ ++LH+N T P
Sbjct: 182 QLKDLRLYQNQLKS-VPDGV------------FDRLT-----SLQYIWLHDNPWDCTCP 222
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 13 SINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLG--VLVLDANRFGG------ 64
S +F L WL+L + + T H + L+N G + F G
Sbjct: 49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108
Query: 65 --ALPFSLANLST-------TMTGIAIGNNQI-SCFIPDGIANLVNLNALGVEFNQLAVT 114
A+ LA+L + T+ + + +N I SC +P +NL NL + + +N +
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
Query: 115 ILKSLQMLFLHEN 127
+ LQ FL EN
Sbjct: 169 TVNDLQ--FLREN 179
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 13 SINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLG--VLVLDANRFGG------ 64
S +F L WL+L + + T H + L+N G + F G
Sbjct: 44 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 103
Query: 65 --ALPFSLANLST-------TMTGIAIGNNQI-SCFIPDGIANLVNLNALGVEFNQLAVT 114
A+ LA+L + T+ + + +N I SC +P +NL NL + + +N +
Sbjct: 104 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
Query: 115 ILKSLQMLFLHEN 127
+ LQ FL EN
Sbjct: 164 TVNDLQ--FLREN 174
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 55 LVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT 114
L LD N+F +P L+N +T I + NN+IS +N+ L L + +N+L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 115 I------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153
LKSL++L LH N + + +L+ L+ + N L
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 69 SLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLA---VTILKSLQMLFLH 125
NL T I I NN+IS P A LV L L + NQL + K+LQ L +H
Sbjct: 71 DFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 129
Query: 126 EN 127
EN
Sbjct: 130 EN 131
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 69 SLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLA---VTILKSLQMLFLH 125
NL T I I NN+IS P A LV L L + NQL + K+LQ L +H
Sbjct: 71 DFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH 129
Query: 126 EN 127
EN
Sbjct: 130 EN 131
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 207 PAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDN 247
PAE+ L NL LD+S N +S + C L+Y DN
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN 303
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 22/186 (11%)
Query: 3 TIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRF 62
T+ G+ S+ G ++L+L N+L + +T LT L L N+
Sbjct: 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQ------LYLGGNKL 64
Query: 63 GGALPFSLANLSTTMTGIAIGNNQISCFIPDGIAN-LVNLNALGVEFNQL------AVTI 115
+LP + N T++T + + NQ+ +P+G+ + L L L + NQL
Sbjct: 65 Q-SLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDK 122
Query: 116 LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKN 175
L L+ L L++N L+ LT L L N P C + L+ N
Sbjct: 123 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-------PWDCTCPGIRYLSEWIN 175
Query: 176 KPSGTM 181
K SG +
Sbjct: 176 KHSGVV 181
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 234 LGCTSLEYLCMQDNSFIGSIPSTLSSLK--SITELDLSCNNL 273
L TS++ L + +N + + ST S LK ++T+LDLS NNL
Sbjct: 219 LSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 54 VLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQL-- 111
VL L +N G++ L + + + NN+I IP + +L L L V NQL
Sbjct: 432 VLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS 487
Query: 112 ----AVTILKSLQMLFLHENILQGTIP 134
L SLQ ++LH+N T P
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 98 LVNLNALGVE-FNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153
L+NLN L +E + A ++Q L++ N ++ P N+ +LT +LE NDL
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 129
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 211 GKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSF--IGSIPSTLSSLKSITELD 267
K+ + LD S+N+ + + G T LE L +Q N + I + +KS+ +LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 268 LSCNNLS 274
+S N++S
Sbjct: 381 ISQNSVS 387
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 52 LGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQL 111
L L L +N+ G ALP + + T +T + +G NQ++ LV+L L + N+L
Sbjct: 66 LKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 112 -----AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKN 166
+ L L L L +N L+ + L+ LT L GN P C++
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY-----LFGN--PWDCECRD 177
Query: 167 LILL 170
++ L
Sbjct: 178 IMYL 181
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Query: 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDAN 60
NTI+ I G F + L ++L N + + + L LVL N
Sbjct: 41 QNTIKVIPPGA----FSPYKKLRRIDLSNNQISELAPDAFQGLR------SLNSLVLYGN 90
Query: 61 RFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAV------T 114
+ LP SL ++ + + N+I+C D +L NLN L + N+L +
Sbjct: 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 115 ILKSLQMLFLHEN 127
L+++Q + L +N
Sbjct: 150 PLRAIQTMHLAQN 162
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 213 LKNLISLDISSNMFSSEISTTLGCTSLEYLCMQD---NSFIGSIPSTLSSL 260
LKNL ++DIS N F S T ++YL + +S G IP TL L
Sbjct: 386 LKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEIL 436
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 98 LVNLNALGVE-FNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153
L+NLN L +E + A ++Q L++ N ++ P N+ +LT +LE NDL
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 25/119 (21%)
Query: 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLST 75
F GL +L LNL +N LG+ + N KL VL L N S L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSR------MFENLDKLEVLDLSYNHIRALGDQSFLGLP- 371
Query: 76 TMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIP 134
+ +A+ NQ+ +PDGI F++L SLQ ++LH N + P
Sbjct: 372 NLKELALDTNQLKS-VPDGI------------FDRLT-----SLQKIWLHTNPWDCSCP 412
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 43/179 (24%)
Query: 1 MNTIRNIFSGKVSI-NFGGLQ---NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLV 56
+N+I I + I + G+Q N+ +L LG N L H I+ L T L L+
Sbjct: 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--------HDISALKELTNLTYLI 91
Query: 57 LDANRFGG-----------------------ALPFSLANLSTTMTGIAIGNNQISCFIPD 93
L N+ +LP + + T +T + + +NQ+ +P
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPK 150
Query: 94 GIAN-LVNLNALGVEFNQL------AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQ 145
G+ + L NL L ++ NQL L L+ L L++N L+ LT LT
Sbjct: 151 GVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTH 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,057,827
Number of Sequences: 62578
Number of extensions: 252388
Number of successful extensions: 755
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 142
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)