Query 038788
Match_columns 278
No_of_seqs 166 out of 2888
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 03:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038788.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038788hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.8E-34 1.5E-38 267.8 16.0 270 1-278 145-445 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.6E-34 2.1E-38 266.7 16.4 270 1-278 169-469 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.2E-29 2.7E-34 212.1 4.8 266 2-275 131-430 (873)
4 KOG4194 Membrane glycoprotein 100.0 5.6E-30 1.2E-34 214.1 1.0 264 2-274 108-405 (873)
5 KOG0444 Cytoskeletal regulator 99.9 7.7E-28 1.7E-32 203.4 -3.5 257 3-274 85-352 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.4E-26 3.1E-31 195.8 -3.8 258 1-272 108-373 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 5.2E-25 1.1E-29 177.1 -2.9 263 2-274 189-541 (565)
8 PRK15387 E3 ubiquitin-protein 99.9 1.2E-21 2.6E-26 175.3 13.5 238 1-278 206-462 (788)
9 KOG0472 Leucine-rich repeat pr 99.9 4.8E-25 1E-29 177.3 -8.0 255 1-274 50-310 (565)
10 PLN03210 Resistant to P. syrin 99.8 4.9E-20 1.1E-24 175.3 17.0 256 1-272 616-904 (1153)
11 cd00116 LRR_RI Leucine-rich re 99.8 7.3E-23 1.6E-27 170.1 -2.4 269 1-273 3-319 (319)
12 PRK15370 E3 ubiquitin-protein 99.8 4.3E-20 9.3E-25 166.1 9.2 239 1-274 183-428 (754)
13 PLN03210 Resistant to P. syrin 99.8 7.9E-19 1.7E-23 167.1 15.7 232 1-248 639-904 (1153)
14 KOG0618 Serine/threonine phosp 99.8 7.1E-22 1.5E-26 173.5 -5.9 239 21-272 242-487 (1081)
15 KOG0618 Serine/threonine phosp 99.8 4.8E-21 1E-25 168.4 -2.8 256 1-271 246-510 (1081)
16 KOG4237 Extracellular matrix p 99.8 1.5E-21 3.3E-26 156.9 -7.8 88 185-273 270-358 (498)
17 cd00116 LRR_RI Leucine-rich re 99.8 4.2E-20 9.2E-25 153.5 -0.8 245 24-275 2-292 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 1.1E-17 2.3E-22 150.7 10.6 220 21-274 179-401 (754)
19 PRK15387 E3 ubiquitin-protein 99.7 2.7E-16 5.9E-21 141.2 16.1 218 21-278 202-438 (788)
20 KOG4237 Extracellular matrix p 99.7 3.6E-19 7.9E-24 143.3 -3.9 249 21-278 68-339 (498)
21 KOG0617 Ras suppressor protein 99.7 7.6E-19 1.6E-23 126.5 -2.5 162 48-234 31-193 (264)
22 KOG0617 Ras suppressor protein 99.7 1E-18 2.2E-23 125.8 -2.9 162 16-208 29-190 (264)
23 KOG1909 Ran GTPase-activating 99.4 7.4E-15 1.6E-19 116.9 -3.6 244 17-273 27-310 (382)
24 PF14580 LRR_9: Leucine-rich r 99.3 8.3E-12 1.8E-16 93.1 5.1 116 21-148 20-147 (175)
25 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4.1E-16 104.7 7.6 188 54-250 97-290 (394)
26 KOG3207 Beta-tubulin folding c 99.2 4.3E-13 9.2E-18 110.0 -2.4 131 18-153 119-258 (505)
27 KOG0532 Leucine-rich repeat (L 99.2 5.1E-13 1.1E-17 113.0 -3.9 191 48-247 73-270 (722)
28 KOG0532 Leucine-rich repeat (L 99.2 7.3E-13 1.6E-17 112.0 -3.1 168 2-185 81-253 (722)
29 KOG1909 Ran GTPase-activating 99.2 3E-13 6.4E-18 107.9 -5.4 224 1-227 35-311 (382)
30 COG4886 Leucine-rich repeat (L 99.2 2.7E-11 5.9E-16 103.7 5.3 174 47-228 113-291 (394)
31 PLN03150 hypothetical protein; 99.1 3.8E-11 8.3E-16 107.8 5.3 84 22-112 420-503 (623)
32 KOG3207 Beta-tubulin folding c 99.1 9E-12 1.9E-16 102.3 0.7 203 47-251 118-340 (505)
33 PF14580 LRR_9: Leucine-rich r 99.1 1.5E-10 3.2E-15 86.4 4.6 127 137-269 15-148 (175)
34 KOG1259 Nischarin, modulator o 99.1 4.3E-11 9.2E-16 94.3 1.6 195 45-250 209-412 (490)
35 PLN03150 hypothetical protein; 99.0 5.6E-10 1.2E-14 100.4 7.3 103 168-271 421-525 (623)
36 PF13855 LRR_8: Leucine rich r 99.0 5E-10 1.1E-14 68.9 3.7 60 214-273 1-61 (61)
37 KOG1259 Nischarin, modulator o 99.0 1E-10 2.2E-15 92.2 -0.1 198 10-228 204-413 (490)
38 KOG0531 Protein phosphatase 1, 98.9 1.3E-10 2.8E-15 100.0 -1.4 219 46-274 91-318 (414)
39 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.5E-14 66.7 3.7 60 51-111 2-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.9 9.3E-10 2E-14 101.5 3.5 21 159-179 711-731 (889)
41 KOG4658 Apoptotic ATPase [Sign 98.8 4.3E-09 9.2E-14 97.3 3.4 86 16-109 567-652 (889)
42 KOG2120 SCF ubiquitin ligase, 98.7 7.1E-11 1.5E-15 92.8 -7.9 149 21-175 186-348 (419)
43 KOG0531 Protein phosphatase 1, 98.6 1.7E-09 3.7E-14 93.0 -3.3 213 48-273 70-289 (414)
44 KOG2982 Uncharacterized conser 98.6 1.5E-08 3.3E-13 79.9 1.5 64 164-228 198-263 (418)
45 KOG1859 Leucine-rich repeat pr 98.5 7.9E-10 1.7E-14 96.6 -7.5 190 50-250 84-292 (1096)
46 KOG1859 Leucine-rich repeat pr 98.5 3E-09 6.6E-14 93.1 -5.1 116 2-130 170-292 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.5 2.2E-09 4.8E-14 83.5 -5.4 133 140-274 156-316 (388)
48 KOG2120 SCF ubiquitin ligase, 98.5 4.1E-09 8.8E-14 83.1 -4.8 167 1-176 190-374 (419)
49 KOG2982 Uncharacterized conser 98.2 5.6E-07 1.2E-11 71.3 2.2 219 50-269 45-287 (418)
50 PF12799 LRR_4: Leucine Rich r 98.2 1E-06 2.2E-11 49.8 2.5 38 237-275 1-38 (44)
51 KOG4579 Leucine-rich repeat (L 98.2 8.4E-08 1.8E-12 67.2 -2.8 104 21-130 28-136 (177)
52 PRK15386 type III secretion pr 98.2 8.1E-06 1.8E-10 68.7 7.7 76 46-128 48-123 (426)
53 KOG4579 Leucine-rich repeat (L 98.1 2.9E-07 6.3E-12 64.6 -2.3 103 1-112 32-136 (177)
54 KOG3665 ZYG-1-like serine/thre 98.0 2.2E-06 4.7E-11 77.7 1.5 84 19-110 147-231 (699)
55 COG5238 RNA1 Ran GTPase-activa 98.0 8E-07 1.7E-11 69.6 -1.2 176 1-178 35-255 (388)
56 PF12799 LRR_4: Leucine Rich r 98.0 5.2E-06 1.1E-10 46.9 2.0 36 21-63 2-37 (44)
57 PRK15386 type III secretion pr 97.9 4.5E-05 9.8E-10 64.3 8.0 137 16-175 48-187 (426)
58 KOG1644 U2-associated snRNP A' 97.9 1.8E-05 4E-10 59.4 4.8 73 77-149 66-148 (233)
59 KOG1644 U2-associated snRNP A' 97.8 5E-05 1.1E-09 57.1 5.5 102 142-246 43-149 (233)
60 KOG3665 ZYG-1-like serine/thre 97.8 1E-05 2.2E-10 73.5 2.1 131 50-180 122-265 (699)
61 KOG2739 Leucine-rich acidic nu 97.7 2.1E-05 4.5E-10 61.4 2.4 94 11-113 34-130 (260)
62 KOG4341 F-box protein containi 97.5 1.7E-06 3.6E-11 71.6 -6.6 109 163-272 318-437 (483)
63 PF13306 LRR_5: Leucine rich r 97.3 0.002 4.3E-08 45.8 8.4 123 135-264 6-129 (129)
64 KOG2123 Uncharacterized conser 97.1 2E-05 4.3E-10 62.2 -4.1 95 19-124 18-124 (388)
65 KOG4341 F-box protein containi 97.0 4.3E-05 9.3E-10 63.5 -3.4 241 18-265 188-456 (483)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00049 1.1E-08 53.9 2.4 60 141-203 43-104 (260)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0079 1.7E-07 42.6 7.2 85 134-223 28-112 (129)
68 KOG2123 Uncharacterized conser 96.7 7E-05 1.5E-09 59.2 -4.1 80 17-106 38-124 (388)
69 KOG1947 Leucine rich repeat pr 96.7 8.3E-05 1.8E-09 65.4 -4.3 106 19-129 187-307 (482)
70 PF00560 LRR_1: Leucine Rich R 96.3 0.0016 3.5E-08 30.6 0.6 12 52-63 2-13 (22)
71 PF13504 LRR_7: Leucine rich r 95.9 0.0042 9.2E-08 27.0 1.0 17 261-278 1-17 (17)
72 PF00560 LRR_1: Leucine Rich R 95.7 0.0069 1.5E-07 28.4 1.3 18 239-257 2-19 (22)
73 KOG4308 LRR-containing protein 95.6 4.4E-05 9.5E-10 66.5 -11.4 174 2-178 93-303 (478)
74 KOG3864 Uncharacterized conser 95.5 0.0017 3.7E-08 49.0 -1.7 83 21-109 102-186 (221)
75 KOG1947 Leucine rich repeat pr 95.3 0.0018 3.8E-08 57.0 -2.6 96 15-112 209-308 (482)
76 KOG4308 LRR-containing protein 95.3 4.4E-05 9.5E-10 66.5 -12.4 179 22-203 89-303 (478)
77 KOG3864 Uncharacterized conser 94.9 0.0041 8.9E-08 47.0 -1.3 32 193-224 104-135 (221)
78 PF13516 LRR_6: Leucine Rich r 92.8 0.055 1.2E-06 25.8 0.9 16 260-275 1-16 (24)
79 KOG0473 Leucine-rich repeat pr 92.6 0.0046 9.9E-08 48.0 -4.7 87 16-112 38-124 (326)
80 smart00370 LRR Leucine-rich re 92.4 0.14 3.1E-06 24.8 2.1 14 261-274 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 92.4 0.14 3.1E-06 24.8 2.1 14 261-274 2-15 (26)
82 smart00364 LRR_BAC Leucine-ric 88.4 0.34 7.4E-06 23.6 1.4 13 262-274 3-15 (26)
83 KOG0473 Leucine-rich repeat pr 86.7 0.01 2.2E-07 46.1 -7.0 79 193-273 45-123 (326)
84 smart00368 LRR_RI Leucine rich 85.2 0.62 1.3E-05 23.1 1.4 14 261-274 2-15 (28)
85 smart00367 LRR_CC Leucine-rich 81.0 1.1 2.5E-05 21.6 1.3 16 260-275 1-17 (26)
86 smart00365 LRR_SD22 Leucine-ri 80.5 1.7 3.6E-05 21.2 1.8 14 261-274 2-15 (26)
87 KOG3763 mRNA export factor TAP 75.6 1.3 2.8E-05 39.1 1.0 63 188-251 217-284 (585)
88 KOG3763 mRNA export factor TAP 73.3 1.8 4E-05 38.2 1.3 64 18-88 216-283 (585)
89 KOG4242 Predicted myosin-I-bin 69.9 12 0.00026 32.8 5.3 62 50-111 214-280 (553)
90 TIGR00864 PCC polycystin catio 22.3 55 0.0012 35.6 1.8 33 2-34 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.8e-34 Score=267.75 Aligned_cols=270 Identities=38% Similarity=0.532 Sum_probs=139.1
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.+.+.+|..++.+++|++|++++|.+.+.. +..+.++++|++|++++|.+.+.+|..+.++.. |++|
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~------p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L 217 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI------PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS-LKWI 217 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccC------ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCC-ccEE
Confidence 355555555556666666666666666666555432 233445555555555555555445555554444 5555
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchhh------hccccEEEeecccccccCCCCCCCcccccEEEcccCccc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLL 154 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 154 (278)
++++|.+++..|..+..+++|+.|++++|.+.... +++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 55555555444555555555555555555443211 344455555555444444444444444555555544444
Q ss_pred ccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEc-------------
Q 038788 155 GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDI------------- 221 (278)
Q Consensus 155 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L------------- 221 (278)
+..|..+..+++|+.|++++|.+++..|..+..+++| +.|++++|.+.+..|..+..+++|+.|++
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL-QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC-CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 4444444444444444444444444444444444444 44444444444444444444444444444
Q ss_pred -----------cCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 222 -----------SSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 222 -----------~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
++|.+.+..+..+. +++|+.+++++|.+.+.+|..+..++.|+.+++++|+++|.+|
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 445 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC
Confidence 44444443333333 5666666666666666666666666666666666666666543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.6e-34 Score=266.73 Aligned_cols=270 Identities=28% Similarity=0.412 Sum_probs=182.5
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.+.+.+|..++++++|++|++++|.+++..+ ..+.++++|++|++++|.+.+.+|..+.++.. |++|
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L 241 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP------RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS-LNHL 241 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC------hHHcCcCCccEEECcCCccCCcCChhHhcCCC-CCEE
Confidence 5777888887788888888888888888887776432 44555566666666666655555555555555 6666
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchh------hhccccEEEeecccc------------------------c
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENIL------------------------Q 130 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~------------------------~ 130 (278)
++++|.+++..|..+..+++|+.|++++|.+... .+++|++|++++|.+ .
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 6665555555555555555555555555554321 134444555554444 4
Q ss_pred ccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhh
Q 038788 131 GTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV 210 (278)
Q Consensus 131 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~ 210 (278)
+..+..+..+++|+.|++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+.++ +.+++++|.+.+..|..+
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L-~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL-FKLILFSNSLEGEIPKSL 400 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC-CEEECcCCEecccCCHHH
Confidence 4444444445555555555555544455555555555555555555555555555555566 666666777666777788
Q ss_pred hcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 211 GKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 211 ~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
..+++|+.|++++|.+++..+..+. +++|+.+++++|.+.+.++..+..+++|++|++++|+++|.+|
T Consensus 401 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 8899999999999999987776665 9999999999999999998888899999999999999998876
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-29 Score=212.12 Aligned_cols=266 Identities=23% Similarity=0.205 Sum_probs=177.0
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEE
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIA 81 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 81 (278)
+|-+|.|+..-.++++.++.||++||+.|.|+.++.. ++.+-.++++|+|++|.|+..-...|..+.. |..|.
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~------sfp~~~ni~~L~La~N~It~l~~~~F~~lns-L~tlk 203 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP------SFPAKVNIKKLNLASNRITTLETGHFDSLNS-LLTLK 203 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC------CCCCCCCceEEeeccccccccccccccccch-heeee
Confidence 4445555544444455555555555555555544321 1222234555555555544322233333332 44444
Q ss_pred eecCeeeecCCccc------------------------cccCCcceecccccccchhh------hccccEEEeecccccc
Q 038788 82 IGNNQISCFIPDGI------------------------ANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENILQG 131 (278)
Q Consensus 82 l~~~~~~~~~~~~l------------------------~~l~~L~~L~l~~~~l~~~~------~~~L~~l~l~~~~~~~ 131 (278)
++.|.++...+..| .+++.|+.|.+..|++.... +.++++|++..|+++.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 44444444434444 44445555555555443211 7778888888888876
Q ss_pred cCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhh
Q 038788 132 TIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG 211 (278)
Q Consensus 132 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~ 211 (278)
....++.++++|+.|+++.|.+...-+..+..+++|++|+++.|.++...+..+..+..| +.|++++|.++......|.
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L-e~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL-EELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh-hhhcccccchHHHHhhHHH
Confidence 666677788888888888888876666777888889999999888887677777778888 8889999998865566788
Q ss_pred cCCCCCEEEccCCeecccCC---CccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccc
Q 038788 212 KLKNLISLDISSNMFSSEIS---TTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSG 275 (278)
Q Consensus 212 ~~~~L~~L~L~~n~~~~~~~---~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 275 (278)
.+++|++|+|++|.+...+. ..+. +++|+.|.+.+|++......+|.+++.|+.|||.+|.|-.
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 88999999999998875332 3333 8999999999999996666789999999999999998864
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=5.6e-30 Score=214.13 Aligned_cols=264 Identities=20% Similarity=0.179 Sum_probs=174.4
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEE
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIA 81 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 81 (278)
++.+|.++ .+|...+...+|+.|+|.+|.|+.+.. +.++.++.|+.||||.|.|. .+|..-+.-..++++|+
T Consensus 108 ~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~s------e~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 108 NLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTS------EELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLN 179 (873)
T ss_pred eeccchhh-hcccccccccceeEEeeeccccccccH------HHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEe
Confidence 34556666 588877788899999999999998765 45778899999999999998 55544333333499999
Q ss_pred eecCeeeecCCccccccCCcceecccccccchhh------hccccEEEeecccccccCCCCCCCcccccEEEcccCcccc
Q 038788 82 IGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLG 155 (278)
Q Consensus 82 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 155 (278)
+++|.|+......|..+.+|-.|.|+.|+++... +++|+.|++..|++.-.-.-.|.++++|+.+.+..|++..
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 9999999888888999999999999999986533 7788888888887763223355566666666666666654
Q ss_pred cCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC
Q 038788 156 NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG 235 (278)
Q Consensus 156 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 235 (278)
-....|..+..++.|++..|.+...-..++..+..| +.|+++.|.|....++.|...++|+.|+|+.|+++...+..+.
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L-~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL-EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchh-hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 444455555555555555555554444555555555 5555555555544455555555555555555555544443333
Q ss_pred -------------------------CCCccEEEccCCeecccC---CccccCCCCCcEEECCCCccc
Q 038788 236 -------------------------CTSLEYLCMQDNSFIGSI---PSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 236 -------------------------~~~L~~l~l~~n~~~~~~---~~~~~~~~~L~~L~l~~n~l~ 274 (278)
+++|++|+|+.|.+...+ ...|.++++|+.|.+.||++.
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence 455555555555544322 223445666666666666554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=7.7e-28 Score=203.41 Aligned_cols=257 Identities=27% Similarity=0.298 Sum_probs=204.2
Q ss_pred Cccccccee-ccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhh-cccccccEE
Q 038788 3 TIRNIFSGK-VSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLA-NLSTTMTGI 80 (278)
Q Consensus 3 l~~n~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L 80 (278)
+-.|+++-+ +|+.+.++..|.+||+|.|++...+ ..+.+.+++..|++|+|+|. ++|..++ ++.. |-+|
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP-------~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtD-LLfL 155 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP-------TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTD-LLFL 155 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcc-------hhhhhhcCcEEEEcccCccc-cCCchHHHhhHh-Hhhh
Confidence 334555543 7777778888888888888887543 44777788888888888887 6666544 4455 8888
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchhh------hccccEEEeeccccc-ccCCCCCCCcccccEEEcccCcc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENILQ-GTIPCSLGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~------~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~ 153 (278)
++++|++. .+|..+..+.+|+.|++++|++...- +++|+.|++++.+-+ ..+|.++..+.+|..++++.|++
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 99888887 56777788899999999999875432 677888888887654 36888999999999999999998
Q ss_pred cccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeec--ccCC
Q 038788 154 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFS--SEIS 231 (278)
Q Consensus 154 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~--~~~~ 231 (278)
. ..|+.+.++++|+.|.+++|+++ ++-.....+.++ +.|++++|+++ .+|+.+..+++|+.|.+.+|+++ +.+.
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l-EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL-ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh-hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 6 78889999999999999999987 455556778888 88999999998 88888888999999988888765 4555
Q ss_pred CccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 232 TTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 232 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
.+..+..|+.+..++|.+. .+|+.++.|+.|+.|.++.|++-
T Consensus 311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence 5555888888888888877 78888888888888888888875
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.4e-26 Score=195.79 Aligned_cols=258 Identities=26% Similarity=0.343 Sum_probs=183.7
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||||+|+++ ..|..+..-.++-.|++|+|+|..++. ..+-+++.|-+||+|+|.+. .+|..+..+.. |++|
T Consensus 108 lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn------~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~-LqtL 178 (1255)
T KOG0444|consen 108 LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN------SLFINLTDLLFLDLSNNRLE-MLPPQIRRLSM-LQTL 178 (1255)
T ss_pred eecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc------hHHHhhHhHhhhccccchhh-hcCHHHHHHhh-hhhh
Confidence 689999999 599999999999999999999998765 33567778889999999988 77777777777 8888
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchh-------hhccccEEEeecccccccCCCCCCCcccccEEEcccCcc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT-------ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 153 (278)
.+++|.+.-..-..+..++.|+.|.+++.+-+.. .+.+|..++++.|.+. ..|+.+-.+++|+.|++++|.+
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence 8888876533233344566667777776654322 2666777777777776 5667777777777777777776
Q ss_pred cccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCc-ccCchhhhcCCCCCEEEccCCeecccCCC
Q 038788 154 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLS-GHFPAEVGKLKNLISLDISSNMFSSEIST 232 (278)
Q Consensus 154 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 232 (278)
+ .+......+..|++|.+++|+++ .+|..+.+++.| +.|.+.+|+++ +-+|+.++.+..|+.+..++|.+.-.+..
T Consensus 258 t-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL-~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg 334 (1255)
T KOG0444|consen 258 T-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL-TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG 334 (1255)
T ss_pred e-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH-HHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh
Confidence 5 34444455666777777777766 567777777777 77777777665 45666677777777777777776655555
Q ss_pred ccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCc
Q 038788 233 TLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNN 272 (278)
Q Consensus 233 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 272 (278)
.++|+.|+.|.++.|++. ..|+++--++.|+.||+.+|+
T Consensus 335 lcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 555777777777777766 566666666777777777765
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=5.2e-25 Score=177.12 Aligned_cols=263 Identities=24% Similarity=0.347 Sum_probs=187.0
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCC-------c--------ccc-ccccCCCCccEEEeeccccccc
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTND-------L--------HFI-TFLTNCTKLGVLVLDANRFGGA 65 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-------~--------~~~-~~l~~~~~L~~L~l~~~~l~~~ 65 (278)
|...|-+ +.+|+.++.++.|+-|++.+|++...+.-. + -++ +..+++.++..||+..|+++ .
T Consensus 189 d~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e 266 (565)
T KOG0472|consen 189 DCNSNLL-ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-E 266 (565)
T ss_pred ccchhhh-hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-c
Confidence 3334444 368888888888888888888887765210 0 011 22457788888999999988 8
Q ss_pred CCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhh------------------------------
Q 038788 66 LPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI------------------------------ 115 (278)
Q Consensus 66 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~------------------------------ 115 (278)
+|+.++.+.+ |++|++++|.++ ..|.+++++ +|+.|-+.+|++-...
T Consensus 267 ~Pde~clLrs-L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 267 VPDEICLLRS-LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred CchHHHHhhh-hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 8888887777 999999999888 567788888 8999999888872110
Q ss_pred -----------------hccccEEEeecccccccCCCCCCCcc---cccEEEcccCccc---------------------
Q 038788 116 -----------------LKSLQMLFLHENILQGTIPCSLGNLT---MLTQRLLEVNDLL--------------------- 154 (278)
Q Consensus 116 -----------------~~~L~~l~l~~~~~~~~~~~~~~~~~---~L~~L~l~~n~~~--------------------- 154 (278)
....+.|+++.-+++ .+|..+..-. -++..+++.|.+.
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence 223334444443333 1121111111 1333444444332
Q ss_pred --ccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCC
Q 038788 155 --GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEIST 232 (278)
Q Consensus 155 --~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 232 (278)
+-.|..+..++.|+.|++++|.+. ..|..++.+..+ +.++++.|.+. .+|..+..+..++.+..++|++....+.
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L-q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL-QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred ccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-heecccccccc-cchHHHhhHHHHHHHHhccccccccChH
Confidence 234445566788888888888776 677777888887 88899988888 7788877777788887788888877777
Q ss_pred ccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 233 TLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 233 ~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
... +.+|..|++.+|.+. .+|+.+++|.+|+.|+++||+|.
T Consensus 500 ~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 444 999999999999988 88999999999999999999986
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.2e-21 Score=175.26 Aligned_cols=238 Identities=23% Similarity=0.221 Sum_probs=158.6
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||++.|.++ .+|..+.. +|+.|++.+|+++.++. ..++|++|++++|+++ .+|.. +++|+.|
T Consensus 206 LdLs~~~Lt-sLP~~l~~--~L~~L~L~~N~Lt~LP~----------lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L 267 (788)
T PRK15387 206 LNVGESGLT-TLPDCLPA--HITTLVIPDNNLTSLPA----------LPPELRTLEVSGNQLT-SLPVL----PPGLLEL 267 (788)
T ss_pred EEcCCCCCC-cCCcchhc--CCCEEEccCCcCCCCCC----------CCCCCcEEEecCCccC-cccCc----cccccee
Confidence 578899998 58887753 79999999999887532 1478999999999888 55642 2347777
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchhh--hccccEEEeecccccccCCCCCC-----------------Ccc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI--LKSLQMLFLHENILQGTIPCSLG-----------------NLT 141 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~L~~l~l~~~~~~~~~~~~~~-----------------~~~ 141 (278)
++++|.++. +|.. ...|+.|++++|+++... .++|++|++++|.+.+ ++.... ...
T Consensus 268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~ 342 (788)
T PRK15387 268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPS 342 (788)
T ss_pred eccCCchhh-hhhc---hhhcCEEECcCCccccccccccccceeECCCCcccc-CCCCcccccccccccCcccccccccc
Confidence 777777663 2321 234555556666554321 3455666666555542 221110 013
Q ss_pred cccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEc
Q 038788 142 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDI 221 (278)
Q Consensus 142 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 221 (278)
+|++|++++|.+. .+|.. .++|+.|++++|.++. +|... .+| +.|++++|.+. .+|.. .++|+.|++
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~~L-~~LdLs~N~Lt-~LP~l---~s~L~~LdL 409 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPALP---SGL-KELIVSGNRLT-SLPVL---PSELKELMV 409 (788)
T ss_pred ccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Ccccc---ccc-ceEEecCCccc-CCCCc---ccCCCEEEc
Confidence 5666677666665 34432 2456666666666653 44322 356 77888888887 45543 367889999
Q ss_pred cCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 222 SSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 222 ~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
++|.+++.+. . +.+|+.|++++|+++ .+|..+.+++.|+.+++++|+++|.+|
T Consensus 410 S~N~LssIP~-l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 410 SGNRLTSLPM-L--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred cCCcCCCCCc-c--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 9998876432 2 357888999999988 788889999999999999999998754
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=4.8e-25 Score=177.29 Aligned_cols=255 Identities=26% Similarity=0.346 Sum_probs=190.9
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
|++++|.+.. +-+-+.++.-|.+++++.|+....++ .++.+..++.++.++|++. .+|..++.... ++.+
T Consensus 50 lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~lp~-------aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~-l~~l 119 (565)
T KOG0472|consen 50 LILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQLPA-------AIGELEALKSLNVSHNKLS-ELPEQIGSLIS-LVKL 119 (565)
T ss_pred hhhccCchhh-ccHhhhcccceeEEEeccchhhhCCH-------HHHHHHHHHHhhcccchHh-hccHHHhhhhh-hhhh
Confidence 3566777764 33446677777788888777775443 3666677777777777777 77777777777 7777
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchhh-----hccccEEEeecccccccCCCCCCCcccccEEEcccCcccc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI-----LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLG 155 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-----~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 155 (278)
+++.|.+. ..|++++.+..++.++..+|.++... +.++..+++.+|++... +...-.++.|++++...|.+.
T Consensus 120 ~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 120 DCSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLLE- 196 (565)
T ss_pred hcccccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhhh-
Confidence 77777776 45666777777777777777775432 66777788888887743 333334888888888877665
Q ss_pred cCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhh-cCCCCCEEEccCCeecccCCCcc
Q 038788 156 NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVG-KLKNLISLDISSNMFSSEISTTL 234 (278)
Q Consensus 156 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~ 234 (278)
.+|+.++.+.+|..|++.+|++. .+| .|..+..+ ..++++.|+|. .+|.... +++++..||+..|++++.+...+
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L-~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLL-KELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHH-HHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHH
Confidence 78888888888888888888875 455 67777777 88888888888 5665544 78888889999999888877777
Q ss_pred CCCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 235 GCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 235 ~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
-+.+|+.+|+++|.++ ..|..++++ +|++|-+.||++.
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 7888889999988888 677788888 7889999888875
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=4.9e-20 Score=175.30 Aligned_cols=256 Identities=21% Similarity=0.197 Sum_probs=146.1
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
|++++|++. .++..++.+++|+.++++++......+ .+..+++|++|++++|.....+|..+..+.. |+.|
T Consensus 616 L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-------~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~-L~~L 686 (1153)
T PLN03210 616 LQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-------DLSMATNLETLKLSDCSSLVELPSSIQYLNK-LEDL 686 (1153)
T ss_pred EECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-------ccccCCcccEEEecCCCCccccchhhhccCC-CCEE
Confidence 355566655 356666667777777776654322111 2556677777777777554467777776666 7777
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchh---hhccccEEEeecccccccCCCCC--------------------
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT---ILKSLQMLFLHENILQGTIPCSL-------------------- 137 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~---~~~~L~~l~l~~~~~~~~~~~~~-------------------- 137 (278)
++++|..-..+|..+ .+++|+.|++++|..... ...+|++|+++++.+. .+|..+
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccc
Confidence 777765333455444 567777777777643211 1456677777776654 233221
Q ss_pred ----------CCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCc
Q 038788 138 ----------GNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFP 207 (278)
Q Consensus 138 ----------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~ 207 (278)
...++|++|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++| +.|++++|..-..+|
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL-~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL-ESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc-CEEECCCCCcccccc
Confidence 012345555555555444555556666666666666654333445443 45555 666666654332333
Q ss_pred hhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCc
Q 038788 208 AEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNN 272 (278)
Q Consensus 208 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 272 (278)
.. ..+|+.|++++|.++..+.....+++|+.|++++|.-...++..+..+++|+.+++++|.
T Consensus 843 ~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 843 DI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 21 245666666666666443333336677777777654333455556666677777777664
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.84 E-value=7.3e-23 Score=170.14 Aligned_cols=269 Identities=21% Similarity=0.221 Sum_probs=191.8
Q ss_pred CCCcccccce-eccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccc------cCCchhhcc
Q 038788 1 MNTIRNIFSG-KVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGG------ALPFSLANL 73 (278)
Q Consensus 1 L~l~~n~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~------~~~~~~~~~ 73 (278)
|||.++.+++ .....+..+.+|+.++++++.++..... .+...+...+.|++++++++.+.. .++..+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~--~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAK--ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHH--HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 6888999984 5666677888999999999998753222 455667888899999999987762 234456665
Q ss_pred cccccEEEeecCeeeecCCccccccCC---cceecccccccchhh----------h-ccccEEEeecccccc----cCCC
Q 038788 74 STTMTGIAIGNNQISCFIPDGIANLVN---LNALGVEFNQLAVTI----------L-KSLQMLFLHENILQG----TIPC 135 (278)
Q Consensus 74 ~~~L~~L~l~~~~~~~~~~~~l~~l~~---L~~L~l~~~~l~~~~----------~-~~L~~l~l~~~~~~~----~~~~ 135 (278)
.. |++|++++|.+....+..+..+.. |+.|++++|.+.... + ++|+++++++|.+++ .+..
T Consensus 81 ~~-L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CG-LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred Cc-eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 55 999999999987655555555555 999999999887322 3 788999999998873 2334
Q ss_pred CCCCcccccEEEcccCccccc----CCcCccCCCCCcEEEeecCcCccc----CCCCcccccccceeEEccCCcCcccCc
Q 038788 136 SLGNLTMLTQRLLEVNDLLGN----IPPSIGNCKNLILLTTRKNKPSGT----MPRQLPRIITLSVLLNLSDNLLSGHFP 207 (278)
Q Consensus 136 ~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~~L~l~~n~~~~~~~ 207 (278)
.+..+++|++|++++|.+.+. ++..+...+.|+.|++++|.+++. ++..+..+++| +.|++++|.+++...
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L-~~L~ls~n~l~~~~~ 238 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL-EVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC-CEEecCCCcCchHHH
Confidence 455667899999999887642 233445567899999999887633 33445567778 899999998874222
Q ss_pred hhhhc-----CCCCCEEEccCCeecccC----CCccC-CCCccEEEccCCeeccc----CCccccCC-CCCcEEECCCCc
Q 038788 208 AEVGK-----LKNLISLDISSNMFSSEI----STTLG-CTSLEYLCMQDNSFIGS----IPSTLSSL-KSITELDLSCNN 272 (278)
Q Consensus 208 ~~~~~-----~~~L~~L~L~~n~~~~~~----~~~~~-~~~L~~l~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~ 272 (278)
..+.. .+.|++|++++|.+++.. ..... +++|+++++++|.+.+. ....+... +.++++++.+|+
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 22221 378999999999886321 12222 67899999999988854 33344444 688888888876
Q ss_pred c
Q 038788 273 L 273 (278)
Q Consensus 273 l 273 (278)
+
T Consensus 319 ~ 319 (319)
T cd00116 319 F 319 (319)
T ss_pred C
Confidence 4
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=4.3e-20 Score=166.06 Aligned_cols=239 Identities=20% Similarity=0.332 Sum_probs=180.9
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
|+++++.++. +|..+. ++|+.|++++|+++..+.. + .++|++|++++|.++ .+|..+. .+|+.|
T Consensus 183 L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsLP~~-------l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L 246 (754)
T PRK15370 183 LRLKILGLTT-IPACIP--EQITTLILDNNELKSLPEN-------L--QGNIKTLYANSNQLT-SIPATLP---DTIQEM 246 (754)
T ss_pred EEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcCChh-------h--ccCCCEEECCCCccc-cCChhhh---ccccEE
Confidence 4567777774 666553 4799999999999976432 2 258999999999988 6776553 349999
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchhh---hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccC
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI---LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNI 157 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~---~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 157 (278)
++++|++. .+|..+. .+|+.|++++|++.... .++|+.|++++|.++. +|..+. +.|+.|++++|.+. .+
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~L 319 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-AL 319 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccCccccccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cC
Confidence 99999988 4565543 47999999999887422 4689999999998883 454432 57889999999887 45
Q ss_pred CcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCC
Q 038788 158 PPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCT 237 (278)
Q Consensus 158 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 237 (278)
|..+ .++|+.|++++|.+++ +|..+. ++| +.|++++|.+. .+|..+ .++|+.|++++|.++..++.. ..
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL-~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l--~~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PEL-QVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENL--PA 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--Ccc-cEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhH--HH
Confidence 5433 3689999999999874 665543 577 99999999998 677655 368999999999998655443 25
Q ss_pred CccEEEccCCeecccCCccc----cCCCCCcEEECCCCccc
Q 038788 238 SLEYLCMQDNSFIGSIPSTL----SSLKSITELDLSCNNLS 274 (278)
Q Consensus 238 ~L~~l~l~~n~~~~~~~~~~----~~~~~L~~L~l~~n~l~ 274 (278)
+|+.|++++|++. .+|..+ ..++.+..+++.+|+++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 7899999999988 555543 44588999999999985
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=7.9e-19 Score=167.13 Aligned_cols=232 Identities=21% Similarity=0.157 Sum_probs=155.9
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||++++.....+|. ++.+++|++|++++|.... .++..+.++++|++|++++|.....+|..+ ++.. |++|
T Consensus 639 L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s-L~~L 709 (1153)
T PLN03210 639 IDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV------ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS-LYRL 709 (1153)
T ss_pred EECCCCCCcCcCCc-cccCCcccEEEecCCCCcc------ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-CCEE
Confidence 35666654445553 6677777777777765433 233456666677777776664333555443 2333 5555
Q ss_pred EeecCeeeec--------------------CCccccccCCcceecccccccc-------------hhhhccccEEEeecc
Q 038788 81 AIGNNQISCF--------------------IPDGIANLVNLNALGVEFNQLA-------------VTILKSLQMLFLHEN 127 (278)
Q Consensus 81 ~l~~~~~~~~--------------------~~~~l~~l~~L~~L~l~~~~l~-------------~~~~~~L~~l~l~~~ 127 (278)
++++|..... .|..+ .+++|+.|++.++... ...+++|++|++++|
T Consensus 710 ~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 710 NLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred eCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 5555432222 22222 3455555555442210 011468999999998
Q ss_pred cccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCc
Q 038788 128 ILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFP 207 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~ 207 (278)
.....+|..++.+++|+.|++++|...+.+|... .+++|+.|++++|.....+|.. ..++ +.|++++|.+. .+|
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL-~~L~Ls~n~i~-~iP 862 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNI-SDLNLSRTGIE-EVP 862 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---cccc-CEeECCCCCCc-cCh
Confidence 7776789999999999999999986555677655 7899999999998755455543 2456 88899999998 789
Q ss_pred hhhhcCCCCCEEEccCC-eecccCCCccCCCCccEEEccCCe
Q 038788 208 AEVGKLKNLISLDISSN-MFSSEISTTLGCTSLEYLCMQDNS 248 (278)
Q Consensus 208 ~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~~~L~~l~l~~n~ 248 (278)
..+..+++|+.|++++| .+...+.....+++|+.+++++|.
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99999999999999996 555544444448899999999886
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=7.1e-22 Score=173.50 Aligned_cols=239 Identities=26% Similarity=0.325 Sum_probs=119.9
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCC
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVN 100 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 100 (278)
+|++++++.++++..+ +.+..|.+|+.++..+|.++ .+|..+..... |++|....|++. .+|.....+..
T Consensus 242 nl~~~dis~n~l~~lp-------~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~-L~~l~~~~nel~-yip~~le~~~s 311 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLP-------EWIGACANLEALNANHNRLV-ALPLRISRITS-LVSLSAAYNELE-YIPPFLEGLKS 311 (1081)
T ss_pred cceeeecchhhhhcch-------HHHHhcccceEecccchhHH-hhHHHHhhhhh-HHHHHhhhhhhh-hCCCcccccce
Confidence 4566666666665432 33555566666666666664 55555555555 666666666555 34445555566
Q ss_pred cceecccccccchhh-------hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEee
Q 038788 101 LNALGVEFNQLAVTI-------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTR 173 (278)
Q Consensus 101 L~~L~l~~~~l~~~~-------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 173 (278)
|+.|++..|.+.... ...|..++.+.+.+.......=..++.|+.|++.+|.++...-+.+.++..|+.|+++
T Consensus 312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 666666665553211 1224444444444432111111123445555555555554444455555555555555
Q ss_pred cCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccC
Q 038788 174 KNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSI 253 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 253 (278)
+|.+.......+.++..| +.|++++|+++ .+|..+..+..|++|...+|++...+ ....++.|+.+|++.|.++...
T Consensus 392 yNrL~~fpas~~~kle~L-eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEEL-EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ccccccCCHHHHhchHHh-HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhh
Confidence 555543222334445555 55555555555 45555555555555555555555333 3333555555555555554221
Q ss_pred CccccCCCCCcEEECCCCc
Q 038788 254 PSTLSSLKSITELDLSCNN 272 (278)
Q Consensus 254 ~~~~~~~~~L~~L~l~~n~ 272 (278)
.....-.|+|++||++||.
T Consensus 469 l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhCCCcccceeeccCCc
Confidence 1111112555555555553
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=4.8e-21 Score=168.37 Aligned_cols=256 Identities=27% Similarity=0.314 Sum_probs=208.4
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
+|+++|++++ +|..++.+.+|+.++..+|+++. ++..+....+|++|++.+|++. .+|........ |++|
T Consensus 246 ~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~-------lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~s-L~tL 315 (1081)
T KOG0618|consen 246 LDISHNNLSN-LPEWIGACANLEALNANHNRLVA-------LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKS-LRTL 315 (1081)
T ss_pred eecchhhhhc-chHHHHhcccceEecccchhHHh-------hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccce-eeee
Confidence 5899999996 77999999999999999999975 4455777889999999999998 78877777777 9999
Q ss_pred EeecCeeeecCCccccccCC-cceecccccccchhh------hccccEEEeecccccccCCCCCCCcccccEEEcccCcc
Q 038788 81 AIGNNQISCFIPDGIANLVN-LNALGVEFNQLAVTI------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~l~~~~------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 153 (278)
+++.|++.......+.-... ++.++.+.|+++... ++.|+.|++.+|++++.....+..+.+|+.|+++.|.+
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 99999998544434444444 788888888875432 78899999999999999888999999999999999998
Q ss_pred cccCC-cCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCC
Q 038788 154 LGNIP-PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEIST 232 (278)
Q Consensus 154 ~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 232 (278)
. .+| ..+.+++.|+.|++++|+++ .+|..+..++.| +.|....|.+. .+| .+..++.|+.+|++.|++....-.
T Consensus 396 ~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L-~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 396 N-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL-HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred c-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh-HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence 7 555 44788999999999999997 678888899999 99999999998 788 778899999999999999864322
Q ss_pred -ccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCC
Q 038788 233 -TLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCN 271 (278)
Q Consensus 233 -~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 271 (278)
...-++|++|++++|.-.......+..+.++...++.-+
T Consensus 471 ~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 222389999999999733233345556666666666655
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-21 Score=156.87 Aligned_cols=88 Identities=23% Similarity=0.274 Sum_probs=48.2
Q ss_pred cccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCC
Q 038788 185 LPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSI 263 (278)
Q Consensus 185 ~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L 263 (278)
|..+++| +++++++|++++.-+..|.....++.|.|..|++...-...+. +..|+.|++.+|+++...|.+|....+|
T Consensus 270 f~~L~~L-~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNL-RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred Hhhcccc-eEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 3445555 5556666665544445555555555666655555544333333 5555556666666555555555555555
Q ss_pred cEEECCCCcc
Q 038788 264 TELDLSCNNL 273 (278)
Q Consensus 264 ~~L~l~~n~l 273 (278)
.+|++-.|++
T Consensus 349 ~~l~l~~Np~ 358 (498)
T KOG4237|consen 349 STLNLLSNPF 358 (498)
T ss_pred eeeehccCcc
Confidence 5555555543
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=4.2e-20 Score=153.53 Aligned_cols=245 Identities=24% Similarity=0.280 Sum_probs=178.8
Q ss_pred EEecCCCCCCCccCCCccccccccCCCCccEEEeeccccccc----CCchhhcccccccEEEeecCeeee------cCCc
Q 038788 24 WLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGA----LPFSLANLSTTMTGIAIGNNQISC------FIPD 93 (278)
Q Consensus 24 ~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~~L~~L~l~~~~~~~------~~~~ 93 (278)
.|+|.++.+++. .+...+..+..|++++++++.+++. ++..+...+. +++++++++.+.. ..+.
T Consensus 2 ~l~L~~~~l~~~-----~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~-l~~l~l~~~~~~~~~~~~~~~~~ 75 (319)
T cd00116 2 QLSLKGELLKTE-----RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPS-LKELCLSLNETGRIPRGLQSLLQ 75 (319)
T ss_pred ccccccCccccc-----chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCC-ceEEeccccccCCcchHHHHHHH
Confidence 467888877743 3445567778899999999998543 3444444444 9999999987762 2234
Q ss_pred cccccCCcceecccccccchhh------hcc---ccEEEeecccccc----cCCCCCCCc-ccccEEEcccCccccc---
Q 038788 94 GIANLVNLNALGVEFNQLAVTI------LKS---LQMLFLHENILQG----TIPCSLGNL-TMLTQRLLEVNDLLGN--- 156 (278)
Q Consensus 94 ~l~~l~~L~~L~l~~~~l~~~~------~~~---L~~l~l~~~~~~~----~~~~~~~~~-~~L~~L~l~~n~~~~~--- 156 (278)
.+..+++|+.|++++|.+.... +.. |++|++++|++.+ .+...+..+ ++|+++++++|.+.+.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 5677889999999999986321 444 9999999998873 222344556 8899999999998732
Q ss_pred -CCcCccCCCCCcEEEeecCcCccc----CCCCcccccccceeEEccCCcCccc----CchhhhcCCCCCEEEccCCeec
Q 038788 157 -IPPSIGNCKNLILLTTRKNKPSGT----MPRQLPRIITLSVLLNLSDNLLSGH----FPAEVGKLKNLISLDISSNMFS 227 (278)
Q Consensus 157 -~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~ 227 (278)
+...+..++.|+.|++++|.+++. ++..+...++| +.+++++|.+++. +...+..+++|++|++++|.++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL-EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC-CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 334456678999999999988743 23334455688 9999999998732 3445667889999999999987
Q ss_pred ccCCCcc-C-----CCCccEEEccCCeecc----cCCccccCCCCCcEEECCCCcccc
Q 038788 228 SEISTTL-G-----CTSLEYLCMQDNSFIG----SIPSTLSSLKSITELDLSCNNLSG 275 (278)
Q Consensus 228 ~~~~~~~-~-----~~~L~~l~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~ 275 (278)
+.....+ . .+.|+++++++|.+++ .+...+..+++|+++++++|++++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 5221111 1 3799999999999873 234456677899999999999975
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=1.1e-17 Score=150.71 Aligned_cols=220 Identities=24% Similarity=0.343 Sum_probs=169.9
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCC
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVN 100 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 100 (278)
+...|++++++++..+. .+ .+.|+.|++++|.++ .+|..+. .+|++|++++|+++. +|..+. .+
T Consensus 179 ~~~~L~L~~~~LtsLP~-------~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~ 242 (754)
T PRK15370 179 NKTELRLKILGLTTIPA-------CI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DT 242 (754)
T ss_pred CceEEEeCCCCcCcCCc-------cc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--cc
Confidence 56789999998887543 12 257999999999998 7787664 359999999999884 565443 47
Q ss_pred cceecccccccchh---hhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcC
Q 038788 101 LNALGVEFNQLAVT---ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKP 177 (278)
Q Consensus 101 L~~L~l~~~~l~~~---~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~ 177 (278)
|+.|++++|.+... ...+|+.|++++|.+. .+|..+. +.|+.|++++|.+. .+|..+. ++|+.|++++|.+
T Consensus 243 L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 243 IQEMELSINRITELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSL 316 (754)
T ss_pred ccEEECcCCccCcCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcc
Confidence 99999999988642 2567999999999998 4565553 58999999999887 4555443 5788999999998
Q ss_pred cccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccc
Q 038788 178 SGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTL 257 (278)
Q Consensus 178 ~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 257 (278)
+. +|..+. ++| +.|++++|.++ .+|..+. ++|+.|++++|+++..+... .++|+.|++++|++. .+|..+
T Consensus 317 t~-LP~~l~--~sL-~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l 386 (754)
T PRK15370 317 TA-LPETLP--PGL-KTLEAGENALT-SLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENL 386 (754)
T ss_pred cc-CCcccc--ccc-eeccccCCccc-cCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhH
Confidence 74 554332 567 88999999998 4676553 79999999999988543322 478999999999988 566655
Q ss_pred cCCCCCcEEECCCCccc
Q 038788 258 SSLKSITELDLSCNNLS 274 (278)
Q Consensus 258 ~~~~~L~~L~l~~n~l~ 274 (278)
. ..|+.|++++|+++
T Consensus 387 ~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 387 P--AALQIMQASRNNLV 401 (754)
T ss_pred H--HHHHHHhhccCCcc
Confidence 4 36999999999997
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=2.7e-16 Score=141.21 Aligned_cols=218 Identities=24% Similarity=0.287 Sum_probs=135.9
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCC
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVN 100 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 100 (278)
+-..|+++++.++.+++ .+. ++|+.|++++|.++ .+|.. +++|++|++++|+++. +|.. .++
T Consensus 202 ~~~~LdLs~~~LtsLP~-------~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lts-LP~l---p~s 263 (788)
T PRK15387 202 GNAVLNVGESGLTTLPD-------CLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTS-LPVL---PPG 263 (788)
T ss_pred CCcEEEcCCCCCCcCCc-------chh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCc-ccCc---ccc
Confidence 45689999999987543 232 47999999999998 66642 3459999999999985 4532 468
Q ss_pred cceecccccccchhh--hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCc
Q 038788 101 LNALGVEFNQLAVTI--LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS 178 (278)
Q Consensus 101 L~~L~l~~~~l~~~~--~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 178 (278)
|+.|++++|.+.... ...|+.|++++|.++ .+|. .+++|++|++++|.+.+ +|.. ..+|+.|++++|.++
T Consensus 264 L~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 264 LLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT 335 (788)
T ss_pred cceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence 999999999987543 678999999999998 3443 24789999999998874 3331 123445555555544
Q ss_pred ccCCCCcccccccceeEEccCCcCcccCchhh-----------------hcCCCCCEEEccCCeecccCCCccCCCCccE
Q 038788 179 GTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-----------------GKLKNLISLDISSNMFSSEISTTLGCTSLEY 241 (278)
Q Consensus 179 ~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~-----------------~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~ 241 (278)
+ +|.. ..+| +.|++++|.++ .+|... ....+|+.|++++|.+++.+.. .++|+.
T Consensus 336 ~-LP~l---p~~L-q~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~ 406 (788)
T PRK15387 336 S-LPTL---PSGL-QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKE 406 (788)
T ss_pred c-cccc---cccc-ceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCE
Confidence 2 2221 1233 44555555554 222211 0123455666666655543221 245666
Q ss_pred EEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 242 LCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 242 l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
|++++|++. .+|... .+|+.|++++|+++ ++|
T Consensus 407 LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP 438 (788)
T PRK15387 407 LMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLP 438 (788)
T ss_pred EEccCCcCC-CCCcch---hhhhhhhhccCccc-ccC
Confidence 666666655 344322 34556666666665 344
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=3.6e-19 Score=143.30 Aligned_cols=249 Identities=18% Similarity=0.202 Sum_probs=160.1
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeec-CeeeecCCccccccC
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGN-NQISCFIPDGIANLV 99 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~ 99 (278)
.-..++|..|+|+.+++ .+|+.+++|+.|||++|.|+..-|++|.++.. +.+|.+.+ |+|+......|.++.
T Consensus 68 ~tveirLdqN~I~~iP~------~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~-l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPP------GAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS-LLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cceEEEeccCCcccCCh------hhccchhhhceecccccchhhcChHhhhhhHh-hhHHHhhcCCchhhhhhhHhhhHH
Confidence 45677788888887766 44777788888888888887667788887777 55554444 778766666677888
Q ss_pred Ccceecccccccchhh------hccccEEEeecccccccCCCCCCCcccccEEEcccCccccc------------CCcCc
Q 038788 100 NLNALGVEFNQLAVTI------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGN------------IPPSI 161 (278)
Q Consensus 100 ~L~~L~l~~~~l~~~~------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~------------~~~~~ 161 (278)
.++.|.+.-|++.... ++++..|.+..|.+.......|..+..++.+.+..|.+... .+-.+
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 8888888777765332 67777777777777644444677777777777766653211 00011
Q ss_pred cCCCCCcEEEeecCcCcccCCCCccc-ccccceeEEccCCc-CcccCc-hhhhcCCCCCEEEccCCeecccCCCccC-CC
Q 038788 162 GNCKNLILLTTRKNKPSGTMPRQLPR-IITLSVLLNLSDNL-LSGHFP-AEVGKLKNLISLDISSNMFSSEISTTLG-CT 237 (278)
Q Consensus 162 ~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~~L~l~~n~-~~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~ 237 (278)
+.........+.+..+...-+..+.. +..+ .. .++.+. ..++-| ..|..+++|+++++++|.+++.-+.++. ..
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl-~s-~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESL-PS-RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhH-HH-hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 11111111111122221111111111 1111 00 112222 222333 3588899999999999999998887777 89
Q ss_pred CccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 238 SLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 238 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
++++|.+..|++...-..+|.++..|+.|+|.+|+||...|
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence 99999999999886666678999999999999999986543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=7.6e-19 Score=126.48 Aligned_cols=162 Identities=28% Similarity=0.410 Sum_probs=106.8
Q ss_pred CCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeecc
Q 038788 48 NCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHEN 127 (278)
Q Consensus 48 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~ 127 (278)
++.+.+.|-+|+|+++ .+|..+..+.. |+.|++++|+++ ..|..+..+++|+.|++.-|++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~n-levln~~nnqie-~lp~~issl~klr~lnvgmnrl---------------- 91 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKN-LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL---------------- 91 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhh-hhhhhcccchhh-hcChhhhhchhhhheecchhhh----------------
Confidence 3344555555566555 45555555555 555666555555 3455555555555555544443
Q ss_pred cccccCCCCCCCcccccEEEcccCccccc-CCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccC
Q 038788 128 ILQGTIPCSLGNLTMLTQRLLEVNDLLGN-IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHF 206 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~ 206 (278)
. ..|..|+.++.|+.|++..|.+... +|..|..+..|+.|++++|.+. .+|..++++.++ +.|.+.+|++- ..
T Consensus 92 --~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l-qil~lrdndll-~l 165 (264)
T KOG0617|consen 92 --N-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL-QILSLRDNDLL-SL 165 (264)
T ss_pred --h-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce-eEEeeccCchh-hC
Confidence 3 5677888888888888887777533 5666777777777788877765 677777777777 77788887777 67
Q ss_pred chhhhcCCCCCEEEccCCeecccCCCcc
Q 038788 207 PAEVGKLKNLISLDISSNMFSSEISTTL 234 (278)
Q Consensus 207 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 234 (278)
|..++.+..|++|.+.+|+++-.+|...
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChhhh
Confidence 7777777788888888887776555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1e-18 Score=125.85 Aligned_cols=162 Identities=27% Similarity=0.479 Sum_probs=111.4
Q ss_pred ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccc
Q 038788 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGI 95 (278)
Q Consensus 16 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 95 (278)
+-++.+++.|.++.|+++.++|. +..+++|+.|++++|+++ .+|.++..++. |+.|+++-|++. ..|.+|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppn-------ia~l~nlevln~~nnqie-~lp~~issl~k-lr~lnvgmnrl~-~lprgf 98 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPN-------IAELKNLEVLNLSNNQIE-ELPTSISSLPK-LRILNVGMNRLN-ILPRGF 98 (264)
T ss_pred ccchhhhhhhhcccCceeecCCc-------HHHhhhhhhhhcccchhh-hcChhhhhchh-hhheecchhhhh-cCcccc
Confidence 34567788899999999987664 778899999999999998 88999999988 999999999887 789999
Q ss_pred cccCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecC
Q 038788 96 ANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKN 175 (278)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 175 (278)
+.+|.|+.|++..|.+.-. .+|..|..++.|+.|++++|++. .+|+.++.+++|+.|.+++|
T Consensus 99 gs~p~levldltynnl~e~-----------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNEN-----------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred CCCchhhhhhccccccccc-----------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 9999999999988877522 23344444445555555555543 44444555555555555555
Q ss_pred cCcccCCCCcccccccceeEEccCCcCcccCch
Q 038788 176 KPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPA 208 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~ 208 (278)
.+. ..|..++.+..+ +.|.+++|.++ .+|+
T Consensus 161 dll-~lpkeig~lt~l-relhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRL-RELHIQGNRLT-VLPP 190 (264)
T ss_pred chh-hCcHHHHHHHHH-HHHhcccceee-ecCh
Confidence 443 344445555555 55555555554 3443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.40 E-value=7.4e-15 Score=116.92 Aligned_cols=244 Identities=17% Similarity=0.195 Sum_probs=153.4
Q ss_pred cCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccc---cccCCchh-------hcccccccEEEeecCe
Q 038788 17 GGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRF---GGALPFSL-------ANLSTTMTGIAIGNNQ 86 (278)
Q Consensus 17 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l---~~~~~~~~-------~~~~~~L~~L~l~~~~ 86 (278)
..+..++.+++++|.+..-... .+.+.+.+.++|+..+++..-. ...+|..+ ..++ +|++|+|++|.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~--~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~-~L~~ldLSDNA 103 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAAR--AIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCP-KLQKLDLSDNA 103 (382)
T ss_pred cccCceEEEeccCCchhHHHHH--HHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCC-ceeEeeccccc
Confidence 3456678888888877654332 3446677777888888876632 22344332 2333 37788888877
Q ss_pred eeecCCcc----ccccCCcceecccccccchhh----hccccEEEeecccccccCCCCCCCcccccEEEcccCccccc--
Q 038788 87 ISCFIPDG----IANLVNLNALGVEFNQLAVTI----LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGN-- 156 (278)
Q Consensus 87 ~~~~~~~~----l~~l~~L~~L~l~~~~l~~~~----~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-- 156 (278)
+....+.. +..+..|++|.+.+|.+.... -..|..+. .....+.-++|+.++..+|.+...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA---------VNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH---------HHhccCCCcceEEEEeeccccccccH
Confidence 66544433 345667777777777665432 11122211 111223446677777777766422
Q ss_pred --CCcCccCCCCCcEEEeecCcCccc----CCCCcccccccceeEEccCCcCcc----cCchhhhcCCCCCEEEccCCee
Q 038788 157 --IPPSIGNCKNLILLTTRKNKPSGT----MPRQLPRIITLSVLLNLSDNLLSG----HFPAEVGKLKNLISLDISSNMF 226 (278)
Q Consensus 157 --~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~~L~l~~n~~~~----~~~~~~~~~~~L~~L~L~~n~~ 226 (278)
+...|...+.|+.+.++.|.+... ....+..+++| ++|++++|-++. .+.+.++.+++|+.++++.|.+
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~L-evLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHL-EVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcc-eeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 223345567788888887776422 22345677888 888888888772 3455677788899999999988
Q ss_pred cccCCCcc----C--CCCccEEEccCCeeccc----CCccccCCCCCcEEECCCCcc
Q 038788 227 SSEISTTL----G--CTSLEYLCMQDNSFIGS----IPSTLSSLKSITELDLSCNNL 273 (278)
Q Consensus 227 ~~~~~~~~----~--~~~L~~l~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l 273 (278)
.......+ . .|+|+.+.+.+|.++.. +...+...|.|+.|++++|++
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 76544332 1 68899999999988743 223345578899999999988
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=8.3e-12 Score=93.07 Aligned_cols=116 Identities=29% Similarity=0.317 Sum_probs=29.5
Q ss_pred cccEEecCCCCCCCccCCCcccccccc-CCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccc-ccc
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLT-NCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGI-ANL 98 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l 98 (278)
+++.|++.+++|+.+.. +. .+.+|+.|++++|.++ .+. .+..+.. |++|++++|.++.. ...+ ..+
T Consensus 20 ~~~~L~L~~n~I~~Ie~--------L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~-L~~L~L~~N~I~~i-~~~l~~~l 87 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN--------LGATLDKLEVLDLSNNQIT-KLE-GLPGLPR-LKTLDLSNNRISSI-SEGLDKNL 87 (175)
T ss_dssp ----------------S----------TT-TT--EEE-TTS--S---T-T----TT---EEE--SS---S--CHHHHHH-
T ss_pred ccccccccccccccccc--------hhhhhcCCCEEECCCCCCc-ccc-CccChhh-hhhcccCCCCCCcc-ccchHHhC
Confidence 45556666665554321 33 2455556666666555 222 3333444 66666666655532 2222 245
Q ss_pred CCcceecccccccchhh-------hccccEEEeecccccccCC---CCCCCcccccEEEc
Q 038788 99 VNLNALGVEFNQLAVTI-------LKSLQMLFLHENILQGTIP---CSLGNLTMLTQRLL 148 (278)
Q Consensus 99 ~~L~~L~l~~~~l~~~~-------~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~L~l 148 (278)
++|+.|++++|++.... +++|+.|++.+|.++.... ..+..+|+|+.||-
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 56666666665553211 5556666666665553210 12233566666553
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=1.9e-11 Score=104.69 Aligned_cols=188 Identities=32% Similarity=0.356 Sum_probs=81.4
Q ss_pred EEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccC-Ccceecccccccchh--h---hccccEEEeecc
Q 038788 54 VLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLV-NLNALGVEFNQLAVT--I---LKSLQMLFLHEN 127 (278)
Q Consensus 54 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~--~---~~~L~~l~l~~~ 127 (278)
.++++.+.+. .....+..... ++.|++.++.++. ++.....+. +|+.|++++|.+... . ++.|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~-l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTN-LTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccc-eeEEecCCccccc-CccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 3555555542 11222333323 6666666666653 333334442 566666666655432 1 444555555555
Q ss_pred cccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCc
Q 038788 128 ILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFP 207 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~ 207 (278)
.+. .++...+..+.|+.|++++|.+. .+|........|+++++++|.+. ..+..+.....+ ..+.+.+|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l-~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL-SGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc-cccccCCceee-ecc
Confidence 544 22333334444555555555443 33332223333444444444321 233333334443 33344444433 223
Q ss_pred hhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeec
Q 038788 208 AEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFI 250 (278)
Q Consensus 208 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 250 (278)
..+..++.++.|++++|.++.... .....+++.++++++.+.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 333444444444444444443322 112344444444444443
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.3e-13 Score=109.97 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=53.8
Q ss_pred CcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccC-CchhhcccccccEEEeecCeeeecCCc-cc
Q 038788 18 GLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGAL-PFSLANLSTTMTGIAIGNNQISCFIPD-GI 95 (278)
Q Consensus 18 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l 95 (278)
++.+|+.+.+.++.+.....+ ...+.|++.+.||++.|-+...- -..+..-.++|+.|+++.|.+..-... .-
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~-----~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE-----EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hHHhhhheeecCccccccchh-----hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 344555555555555443211 23445555555555555443110 011222222355555555554321111 11
Q ss_pred cccCCcceecccccccchhh-------hccccEEEeecccccccCCCCCCCcccccEEEcccCcc
Q 038788 96 ANLVNLNALGVEFNQLAVTI-------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~~~-------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 153 (278)
..+++|+.|.++.|.++-.. +|+|+.|++..|............++.|++|++++|.+
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 23445555555555543211 44455555544431111122222334444445544443
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=5.1e-13 Score=112.96 Aligned_cols=191 Identities=26% Similarity=0.378 Sum_probs=156.5
Q ss_pred CCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhh----hccccEEE
Q 038788 48 NCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLF 123 (278)
Q Consensus 48 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----~~~L~~l~ 123 (278)
.+.--...|++.|.+. .+|..+..+.. |+.+.+..|.+. .+|..+..+..|.+++++.|+++... .--|+.+-
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~-Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVS-LESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHH-HHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEE
Confidence 3444457889999988 89999988888 999999998887 57888899999999999999986533 55689999
Q ss_pred eecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCc
Q 038788 124 LHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLS 203 (278)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~ 203 (278)
+++|+++ .+|..++...+|..|+.+.|.+. .+|..++.+.+|+.+.+++|.+. .+|+.+..++ | ..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-L-i~lDfScNkis 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-L-IRLDFSCNKIS 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-e-eeeecccCcee
Confidence 9999998 67889998899999999999987 67778889999999999999886 5777777444 5 78899999999
Q ss_pred ccCchhhhcCCCCCEEEccCCeecccCCCccC---CCCccEEEccCC
Q 038788 204 GHFPAEVGKLKNLISLDISSNMFSSEISTTLG---CTSLEYLCMQDN 247 (278)
Q Consensus 204 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~---~~~L~~l~l~~n 247 (278)
.+|..|..|+.|++|.|.+|.+.+-+...+. ..=-++|+..-+
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 8999999999999999999999875555542 222255555555
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=7.3e-13 Score=112.02 Aligned_cols=168 Identities=26% Similarity=0.334 Sum_probs=135.6
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEE
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIA 81 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 81 (278)
|++.|++. .+|..++.+--|+.+.+..|.+..+ +..++++..|++++++.|++. .+|..++.++ |+.|.
T Consensus 81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~i-------p~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli 149 (722)
T KOG0532|consen 81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIRTI-------PEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLI 149 (722)
T ss_pred hccccccc-cCchHHHHHHHHHHHHHHhccceec-------chhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEE
Confidence 67778877 4777777777788888877777653 455888999999999999998 8888887664 99999
Q ss_pred eecCeeeecCCccccccCCcceecccccccchhh-----hccccEEEeecccccccCCCCCCCcccccEEEcccCccccc
Q 038788 82 IGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI-----LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGN 156 (278)
Q Consensus 82 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-----~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 156 (278)
+++|+++ .+|..++..+.|..|+.+.|.+.... +.+|+.+.+..|++. .+|..+..+ .|..||++.|++. .
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 9999988 67888888899999999999885432 778888889989887 566677643 4778999999987 7
Q ss_pred CCcCccCCCCCcEEEeecCcCcccCCCCc
Q 038788 157 IPPSIGNCKNLILLTTRKNKPSGTMPRQL 185 (278)
Q Consensus 157 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 185 (278)
+|-.|.++..|++|.+..|.+. ..|..+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 8888999999999999998886 444443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=3e-13 Score=107.92 Aligned_cols=224 Identities=17% Similarity=0.154 Sum_probs=142.0
Q ss_pred CCCcccccceecccc----ccCcccccEEecCCCCCCCccCC----Cc-cccccccCCCCccEEEeecccccccCCchh-
Q 038788 1 MNTIRNIFSGKVSIN----FGGLQNLSWLNLGKNNLGTWTTN----DL-HFITFLTNCTKLGVLVLDANRFGGALPFSL- 70 (278)
Q Consensus 1 L~l~~n~~~~~~~~~----~~~l~~L~~l~l~~~~~~~~~~~----~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~- 70 (278)
||||+|.|-...... +.+.++|+..++++- ++|..-+ .+ .+.+.+..|++|++++||.|-+....+..+
T Consensus 35 l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 35 LDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 578888887764444 456678888888765 3443221 11 334567788899999999998875555443
Q ss_pred ---hcccccccEEEeecCeeeecC-------------CccccccCCcceecccccccchhh----------hccccEEEe
Q 038788 71 ---ANLSTTMTGIAIGNNQISCFI-------------PDGIANLVNLNALGVEFNQLAVTI----------LKSLQMLFL 124 (278)
Q Consensus 71 ---~~~~~~L~~L~l~~~~~~~~~-------------~~~l~~l~~L~~L~l~~~~l~~~~----------~~~L~~l~l 124 (278)
.++.+ |++|.+.+|.+.-.- ..-...-+.|+.+...+|++...+ .+.|+.+.+
T Consensus 114 ~ll~s~~~-L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~ 192 (382)
T KOG1909|consen 114 ELLSSCTD-LEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRL 192 (382)
T ss_pred HHHHhccC-HHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEE
Confidence 34555 999999999865221 111234567888888888875332 567888888
Q ss_pred eccccccc----CCCCCCCcccccEEEcccCccccc----CCcCccCCCCCcEEEeecCcCcccCCCCc-----cccccc
Q 038788 125 HENILQGT----IPCSLGNLTMLTQRLLEVNDLLGN----IPPSIGNCKNLILLTTRKNKPSGTMPRQL-----PRIITL 191 (278)
Q Consensus 125 ~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L 191 (278)
..|.+... ....+..+++|+.|++.+|-++.. +...+..++.|+.+++++|-+.......+ ...+.|
T Consensus 193 ~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L 272 (382)
T KOG1909|consen 193 SQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSL 272 (382)
T ss_pred ecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCC
Confidence 88877532 234556678888888888877543 33455667777888887776653322111 124556
Q ss_pred ceeEEccCCcCccc----CchhhhcCCCCCEEEccCCeec
Q 038788 192 SVLLNLSDNLLSGH----FPAEVGKLKNLISLDISSNMFS 227 (278)
Q Consensus 192 ~~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~ 227 (278)
+++.+.+|.|+.. +.......+.|..|+|++|.+.
T Consensus 273 -~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 273 -EVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred -ceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 7777777777621 1223334567777777777763
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=2.7e-11 Score=103.72 Aligned_cols=174 Identities=30% Similarity=0.431 Sum_probs=104.6
Q ss_pred cCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchh-----hhccccE
Q 038788 47 TNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT-----ILKSLQM 121 (278)
Q Consensus 47 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-----~~~~L~~ 121 (278)
...+.++.+++.++.++ .++........+|++|++++|++. ..|..+..+++|+.|+++.|+++.. ..+.|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 33456677777777666 555444444212777777777666 3334556677777777777766432 2566777
Q ss_pred EEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCc
Q 038788 122 LFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNL 201 (278)
Q Consensus 122 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~ 201 (278)
+++++|.+. .++........|+++.++.|... ..+..+.+...+..+.+..|++. ..+..+..++++ +.+++++|.
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l-~~L~~s~n~ 266 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL-ETLDLSNNQ 266 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcccccc-ceecccccc
Confidence 777777776 34444444455777777776432 33445566666666666666554 235555666666 777777777
Q ss_pred CcccCchhhhcCCCCCEEEccCCeecc
Q 038788 202 LSGHFPAEVGKLKNLISLDISSNMFSS 228 (278)
Q Consensus 202 ~~~~~~~~~~~~~~L~~L~L~~n~~~~ 228 (278)
++ .++. +....+++.++++++.+..
T Consensus 267 i~-~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 267 IS-SISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cc-cccc-ccccCccCEEeccCccccc
Confidence 76 3333 5666777777777766654
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.15 E-value=3.8e-11 Score=107.85 Aligned_cols=84 Identities=21% Similarity=0.374 Sum_probs=50.1
Q ss_pred ccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCc
Q 038788 22 LSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNL 101 (278)
Q Consensus 22 L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 101 (278)
++.|+|+++.+.+. ++..+..+++|++|++++|.+.+.+|..+..+.. |+.|++++|++++..|..+..+++|
T Consensus 420 v~~L~L~~n~L~g~------ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~-L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGF------IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEECCCCCcccc------CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCC-CCEEECCCCCCCCCCchHHhcCCCC
Confidence 55566666666553 2344555666666666666666566665655555 6666666666665566666666666
Q ss_pred ceecccccccc
Q 038788 102 NALGVEFNQLA 112 (278)
Q Consensus 102 ~~L~l~~~~l~ 112 (278)
+.|++++|.+.
T Consensus 493 ~~L~Ls~N~l~ 503 (623)
T PLN03150 493 RILNLNGNSLS 503 (623)
T ss_pred CEEECcCCccc
Confidence 66666666554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=9e-12 Score=102.34 Aligned_cols=203 Identities=21% Similarity=0.165 Sum_probs=119.2
Q ss_pred cCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeec--CCccccccCCcceecccccccchhh-------hc
Q 038788 47 TNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCF--IPDGIANLVNLNALGVEFNQLAVTI-------LK 117 (278)
Q Consensus 47 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~l~~~~-------~~ 117 (278)
+++++|+++.+.++......-....+...+++.|+++.|-+... +......+|+|+.|+++.|++.... ++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35677778888777665221112223333478888887765432 2233466788888888888774322 67
Q ss_pred cccEEEeecccccc-cCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCC--CCccccccccee
Q 038788 118 SLQMLFLHENILQG-TIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMP--RQLPRIITLSVL 194 (278)
Q Consensus 118 ~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~~ 194 (278)
.|+.|.++.|+++- .+...+..+|+++.|++..|.....-......+..|++|++++|.+.. ++ .....++.| +.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L-~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGL-NQ 275 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccch-hh
Confidence 77888888877762 122233456777777877774211222223345677778887776642 22 334566666 77
Q ss_pred EEccCCcCcccC-ch-----hhhcCCCCCEEEccCCeecccCC--CccCCCCccEEEccCCeecc
Q 038788 195 LNLSDNLLSGHF-PA-----EVGKLKNLISLDISSNMFSSEIS--TTLGCTSLEYLCMQDNSFIG 251 (278)
Q Consensus 195 L~l~~n~~~~~~-~~-----~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~ 251 (278)
++++.+++.+.. |+ .....++|++|++..|++.++.. ....+++|+.+.+..|.+..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 777777776322 11 12445777788887777754322 22226677777777666653
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.5e-10 Score=86.43 Aligned_cols=127 Identities=25% Similarity=0.285 Sum_probs=49.8
Q ss_pred CCCcccccEEEcccCcccccCCcCcc-CCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhh-hcCC
Q 038788 137 LGNLTMLTQRLLEVNDLLGNIPPSIG-NCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV-GKLK 214 (278)
Q Consensus 137 ~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~-~~~~ 214 (278)
+.+..++++|++.+|.+.. + +.++ .+.+|+.|++++|.++. + ..+..++.| +.|++++|.|+ .+...+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L-~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRL-KTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT---EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhh-hhcccCCCCCC-ccccchHHhCC
Confidence 3345578999999999863 3 3455 57889999999999874 3 246778888 99999999999 444444 4689
Q ss_pred CCCEEEccCCeecccCC-Ccc-CCCCccEEEccCCeecccCC---ccccCCCCCcEEECC
Q 038788 215 NLISLDISSNMFSSEIS-TTL-GCTSLEYLCMQDNSFIGSIP---STLSSLKSITELDLS 269 (278)
Q Consensus 215 ~L~~L~L~~n~~~~~~~-~~~-~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~L~l~ 269 (278)
+|++|.+++|++.+... ..+ .+++|+.|++.+|++...-. ..+..+|+|+.||-.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999999999986432 122 28999999999999885421 235778999998754
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=4.3e-11 Score=94.27 Aligned_cols=195 Identities=20% Similarity=0.168 Sum_probs=105.1
Q ss_pred cccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccc-------hhhhc
Q 038788 45 FLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLA-------VTILK 117 (278)
Q Consensus 45 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~-------~~~~~ 117 (278)
.+..+++|+.+.++.|.-. .+-. +....+-|.++.+++..++.. +.+.....+.-.....-... .....
T Consensus 209 ~l~~f~~l~~~~~s~~~~~-~i~~-~~~~kptl~t~~v~~s~~~~~--~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTE-NIVD-IELLKPTLQTICVHNTTIQDV--PSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred chHHhhhhheeeeeccchh-heec-eeecCchhheeeeeccccccc--ccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 3555677777777777543 2221 122223377777766554321 11111111111111111100 01145
Q ss_pred cccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEc
Q 038788 118 SLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNL 197 (278)
Q Consensus 118 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l 197 (278)
.|++++++.|.++ .+.+++.-.|+++.|+++.|.+... ..+..+++|+.||+++|.++ ....+-.++-++ +.|.+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI-KtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI-KTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE-eeeeh
Confidence 6777777777776 5566666677777777777777532 23666777777777777665 333444455566 66677
Q ss_pred cCCcCcccCchhhhcCCCCCEEEccCCeecc--cCCCccCCCCccEEEccCCeec
Q 038788 198 SDNLLSGHFPAEVGKLKNLISLDISSNMFSS--EISTTLGCTSLEYLCMQDNSFI 250 (278)
Q Consensus 198 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~--~~~~~~~~~~L~~l~l~~n~~~ 250 (278)
++|.+.+ ...+..+-+|..|++++|++.. .......+|-|+.+.+.+|.+.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 7776652 2334455666677777776653 2222223566666666666655
No 35
>PLN03150 hypothetical protein; Provisional
Probab=99.03 E-value=5.6e-10 Score=100.44 Aligned_cols=103 Identities=29% Similarity=0.466 Sum_probs=46.5
Q ss_pred cEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccC
Q 038788 168 ILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQD 246 (278)
Q Consensus 168 ~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~ 246 (278)
+.|++++|.+.+..|..+..+++| +.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+. +++|+.|++++
T Consensus 421 ~~L~L~~n~L~g~ip~~i~~L~~L-~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 421 DGLGLDNQGLRGFIPNDISKLRHL-QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEECCCCCccccCCHHHhCCCCC-CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 344444444444444444444444 4444444444444444444444444444444444444333333 44444444444
Q ss_pred CeecccCCccccCC-CCCcEEECCCC
Q 038788 247 NSFIGSIPSTLSSL-KSITELDLSCN 271 (278)
Q Consensus 247 n~~~~~~~~~~~~~-~~L~~L~l~~n 271 (278)
|.+.+.+|..+... .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 44444444444331 23334444444
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=5e-10 Score=68.93 Aligned_cols=60 Identities=35% Similarity=0.459 Sum_probs=48.7
Q ss_pred CCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcc
Q 038788 214 KNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNL 273 (278)
Q Consensus 214 ~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 273 (278)
++|++|++++|+++..++.++. +++|+++++++|++....+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888877777766 88888888888888866667788888888888888875
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=1e-10 Score=92.16 Aligned_cols=198 Identities=19% Similarity=0.170 Sum_probs=94.0
Q ss_pred eeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccccccc---CCchhhcccccccEEEeecCe
Q 038788 10 GKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGA---LPFSLANLSTTMTGIAIGNNQ 86 (278)
Q Consensus 10 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~---~~~~~~~~~~~L~~L~l~~~~ 86 (278)
..+|..+.-+++|.++.++.|.-..+ ......-+.|+.+...+..+.+. +|... +. +.+.-.
T Consensus 204 ~~l~f~l~~f~~l~~~~~s~~~~~~i-------~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~------~~--D~~~~E 268 (490)
T KOG1259|consen 204 NRLSFNLNAFRNLKTLKFSALSTENI-------VDIELLKPTLQTICVHNTTIQDVPSLLPETI------LA--DPSGSE 268 (490)
T ss_pred cccccchHHhhhhheeeeeccchhhe-------eceeecCchhheeeeecccccccccccchhh------hc--CccCCC
Confidence 34555566677888888887743221 11122235677777766554321 22111 11 111100
Q ss_pred ---eeecCCccccccCCcceecccccccchhh-----hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCC
Q 038788 87 ---ISCFIPDGIANLVNLNALGVEFNQLAVTI-----LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIP 158 (278)
Q Consensus 87 ---~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-----~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 158 (278)
.++..-..+..-+.|+.+++++|.++... .|+++.|+++.|++.. ...+..+++|+.|++++|.+. .+.
T Consensus 269 ~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~ 345 (490)
T KOG1259|consen 269 PSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECV 345 (490)
T ss_pred CCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhh
Confidence 01111111222334555566665554322 5556666666665552 123555566666666666554 222
Q ss_pred cCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCccc-CchhhhcCCCCCEEEccCCeecc
Q 038788 159 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH-FPAEVGKLKNLISLDISSNMFSS 228 (278)
Q Consensus 159 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~n~~~~ 228 (278)
.+-..+-+++.|.+.+|.+.. -+.+.++=+| ..||+++|.|... --..++.++.|+.+.|.+|.+..
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSL-vnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIET--LSGLRKLYSL-VNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhh--hhhhHhhhhh-eeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 233344455556666655432 2223444445 5556666665521 11234556666666666666553
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.91 E-value=1.3e-10 Score=99.98 Aligned_cols=219 Identities=27% Similarity=0.250 Sum_probs=103.6
Q ss_pred ccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhh----hccccE
Q 038788 46 LTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQM 121 (278)
Q Consensus 46 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----~~~L~~ 121 (278)
+..+++|.++++.+|.+. .+...+..+.. |++|++++|.|+.. ..+..++.|+.|++++|.++... +..|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~-L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVN-LQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhc-chheeccccccccc--cchhhccchhhheeccCcchhccCCccchhhhc
Confidence 455566666666666665 33322444444 66666666666543 23445555666666666665432 555666
Q ss_pred EEeecccccccCC-CCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCC
Q 038788 122 LFLHENILQGTIP-CSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDN 200 (278)
Q Consensus 122 l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n 200 (278)
+++++|++...-. . ...+.+++.+.+.+|.+... ..+.....+..+++..|.++..-+........+ +.+++.+|
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L-~~l~l~~n 242 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLNELVMLHL-RELYLSGN 242 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcccchhHHH-HHHhcccC
Confidence 6666666653221 1 34556666666666655321 122222223333444444432222111111113 55566666
Q ss_pred cCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeeccc---CCcc-ccCCCCCcEEECCCCccc
Q 038788 201 LLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGS---IPST-LSSLKSITELDLSCNNLS 274 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~---~~~~-~~~~~~L~~L~l~~n~l~ 274 (278)
.+. ..+..+..+..+..+++.++.+...-.. -..+.+..+....+++... .... ....+.++...+.+|.+.
T Consensus 243 ~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 243 RIS-RSPEGLENLKNLPVLDLSSNRISNLEGL-ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred ccc-cccccccccccccccchhhccccccccc-cccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 655 3323444556666666666655432111 1123444444444443311 1111 234455666666665544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.6e-09 Score=66.67 Aligned_cols=60 Identities=32% Similarity=0.476 Sum_probs=35.8
Q ss_pred CccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceeccccccc
Q 038788 51 KLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQL 111 (278)
Q Consensus 51 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 111 (278)
+|++|++++|.++...+..|..++. |++|++++|+++...+..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~-L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPN-LETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTT-ESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCC-CCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5666666666666333334444444 66666666666666666666666666666666653
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=9.3e-10 Score=101.55 Aligned_cols=21 Identities=29% Similarity=0.188 Sum_probs=13.3
Q ss_pred cCccCCCCCcEEEeecCcCcc
Q 038788 159 PSIGNCKNLILLTTRKNKPSG 179 (278)
Q Consensus 159 ~~~~~~~~L~~L~l~~~~~~~ 179 (278)
..+..+..|+.|.+.++.+.+
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred cccccccCcceEEEEcCCCch
Confidence 345556677777777766543
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=4.3e-09 Score=97.26 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=43.4
Q ss_pred ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccc
Q 038788 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGI 95 (278)
Q Consensus 16 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 95 (278)
|..++.|++||+++|.-.+ .+|+.++.+-+|++|++++..+. .+|.++.++.. |.+|++..+.-....|...
T Consensus 567 f~~m~~LrVLDLs~~~~l~------~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~-L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS------KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK-LIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred HhhCcceEEEECCCCCccC------cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh-hheeccccccccccccchh
Confidence 4455555555555543222 34445555555555555555555 55555555554 5555555544322334444
Q ss_pred cccCCcceeccccc
Q 038788 96 ANLVNLNALGVEFN 109 (278)
Q Consensus 96 ~~l~~L~~L~l~~~ 109 (278)
..+++|++|.+...
T Consensus 639 ~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 639 LELQSLRVLRLPRS 652 (889)
T ss_pred hhcccccEEEeecc
Confidence 44555555554433
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=7.1e-11 Score=92.82 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=77.1
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCe-eeec-CCcccccc
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQ-ISCF-IPDGIANL 98 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~l~~l 98 (278)
.|+.+|+++..|+.. .+.-.++.|.+|+.|.+.++++.+.+...+++... |+.|+++.+. ++.. ..-.+..+
T Consensus 186 Rlq~lDLS~s~it~s-----tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~-L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS-----TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN-LVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHH-----HHHHHHHHHHhhhhccccccccCcHHHHHHhcccc-ceeeccccccccchhHHHHHHHhh
Confidence 467777777766643 23344666777777777777776666666666666 7777776643 3321 11124556
Q ss_pred CCcceecccccccchhh--------hccccEEEeeccccc---ccCCCCCCCcccccEEEcccCccc-ccCCcCccCCCC
Q 038788 99 VNLNALGVEFNQLAVTI--------LKSLQMLFLHENILQ---GTIPCSLGNLTMLTQRLLEVNDLL-GNIPPSIGNCKN 166 (278)
Q Consensus 99 ~~L~~L~l~~~~l~~~~--------~~~L~~l~l~~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~ 166 (278)
..|+.|+++.|.+.... .++|+.|+++++.-. ..+..-...++.+.+||++++... ......+..++-
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 66777777666553221 455555555554321 011112233455555555554321 111223344455
Q ss_pred CcEEEeecC
Q 038788 167 LILLTTRKN 175 (278)
Q Consensus 167 L~~L~l~~~ 175 (278)
|+++.+++|
T Consensus 340 L~~lSlsRC 348 (419)
T KOG2120|consen 340 LQHLSLSRC 348 (419)
T ss_pred heeeehhhh
Confidence 555555544
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=1.7e-09 Score=93.05 Aligned_cols=213 Identities=25% Similarity=0.244 Sum_probs=117.9
Q ss_pred CCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhh----hccccEEE
Q 038788 48 NCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLF 123 (278)
Q Consensus 48 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----~~~L~~l~ 123 (278)
.+..++.+.++.|.+. ..-..+..+.. |+.|++.+|++... ...+..+++|++|++++|.++... ++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~-l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKS-LEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccc-eeeeeccccchhhc-ccchhhhhcchheeccccccccccchhhccchhhhe
Confidence 4556666667777666 22223444555 88888888877643 222667788888888888776432 56677777
Q ss_pred eecccccccCCCCCCCcccccEEEcccCcccccCC-cCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcC
Q 038788 124 LHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLL 202 (278)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~ 202 (278)
+.+|.+.. ...+..++.|+.+++++|.+...-+ . ...++.++.+++.+|.+.. ...+.....+ ..+++..|.+
T Consensus 147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l-~~~~l~~n~i 220 (414)
T KOG0531|consen 147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKL-VLLSLLDNKI 220 (414)
T ss_pred eccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHH-HHhhcccccc
Confidence 77777763 2344456777777777777653322 1 3556666667777666542 2222233333 3345666665
Q ss_pred cccCchhhhcCC--CCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCcc
Q 038788 203 SGHFPAEVGKLK--NLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNL 273 (278)
Q Consensus 203 ~~~~~~~~~~~~--~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 273 (278)
...-+. .... .|+.+.+++|.+.........+..+..+++..|++... ..+...+.+..+....|.+
T Consensus 221 ~~~~~l--~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 221 SKLEGL--NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred eeccCc--ccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence 521111 1112 26677777776664322222256666677776665521 1123334444444444443
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.5e-08 Score=79.94 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=36.3
Q ss_pred CCCCcEEEeecCcCcccC-CCCcccccccceeEEccCCcCcc-cCchhhhcCCCCCEEEccCCeecc
Q 038788 164 CKNLILLTTRKNKPSGTM-PRQLPRIITLSVLLNLSDNLLSG-HFPAEVGKLKNLISLDISSNMFSS 228 (278)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~ 228 (278)
+|++..+.+..|.+...- .......+.+ ..|+++.+.|.+ ..-+.+..++.|..|.++++.+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~-~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSL-SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcc-hhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 455666666666543221 1112222333 445777777762 334566777888888888887764
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=7.9e-10 Score=96.64 Aligned_cols=190 Identities=24% Similarity=0.237 Sum_probs=118.5
Q ss_pred CCccEEEeecccccccC-CchhhcccccccEEEeecCeeeecCCcccccc-CCcceecccccccchh-------------
Q 038788 50 TKLGVLVLDANRFGGAL-PFSLANLSTTMTGIAIGNNQISCFIPDGIANL-VNLNALGVEFNQLAVT------------- 114 (278)
Q Consensus 50 ~~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~~------------- 114 (278)
++++.+.+-...-.+.. |-.++.+.. |+.|.++++.+.. ..++..+ ..|++|-.+ +.++..
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~s-Lr~LElrg~~L~~--~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRS-LRVLELRGCDLST--AKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISN 159 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccc-eeeEEecCcchhh--hhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhcccccc
Confidence 34444444433332222 666777767 8888888887764 2233222 134443322 222110
Q ss_pred --hhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccc
Q 038788 115 --ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLS 192 (278)
Q Consensus 115 --~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 192 (278)
...+|...+.++|.+. .+..++.-++.++.|++++|++... ..+..++.|+.||+++|.+.. +|..-..-..|
T Consensus 160 s~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L- 234 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKL- 234 (1096)
T ss_pred chhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhh-
Confidence 0445777778888877 6667777788888899998888644 267788888999998888763 44322222236
Q ss_pred eeEEccCCcCcccCchhhhcCCCCCEEEccCCeeccc--CCCccCCCCccEEEccCCeec
Q 038788 193 VLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSE--ISTTLGCTSLEYLCMQDNSFI 250 (278)
Q Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~--~~~~~~~~~L~~l~l~~n~~~ 250 (278)
+.|.+++|.++. ...+.++.+|+.||++.|-+.+- ......+..|+.|.|.+|.+.
T Consensus 235 ~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 788888888772 23446778888888888877642 222222677888888888775
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=3e-09 Score=93.09 Aligned_cols=116 Identities=28% Similarity=0.311 Sum_probs=92.4
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEE
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIA 81 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 81 (278)
++++|.++ ..-.+++-++.|++|+|++|+++.. +.+..|+.|++||+++|.+. .+|. ++...++|..|.
T Consensus 170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--------~~Lr~l~~LkhLDlsyN~L~-~vp~-l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--------DNLRRLPKLKHLDLSYNCLR-HVPQ-LSMVGCKLQLLN 238 (1096)
T ss_pred hcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--------HHHHhcccccccccccchhc-cccc-cchhhhhheeee
Confidence 57788887 3566677889999999999999976 45889999999999999998 6664 333334499999
Q ss_pred eecCeeeecCCccccccCCcceecccccccchhh-------hccccEEEeeccccc
Q 038788 82 IGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI-------LKSLQMLFLHENILQ 130 (278)
Q Consensus 82 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-------~~~L~~l~l~~~~~~ 130 (278)
+++|.++.. .++.++.+|+.||++.|-+.... +..|+.|++.+|.+.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999998744 56789999999999999875432 677888888888764
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=2.2e-09 Score=83.52 Aligned_cols=133 Identities=18% Similarity=0.108 Sum_probs=80.8
Q ss_pred cccccEEEcccCcccccCCc-----CccCCCCCcEEEeecCcCcccC-----CCCcccccccceeEEccCCcCcc----c
Q 038788 140 LTMLTQRLLEVNDLLGNIPP-----SIGNCKNLILLTTRKNKPSGTM-----PRQLPRIITLSVLLNLSDNLLSG----H 205 (278)
Q Consensus 140 ~~~L~~L~l~~n~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~~L~l~~n~~~~----~ 205 (278)
-|.|+.++...|.+. ..+. .+..-..|+.+.+..|.+.... ...+..+.+| +.|++++|-++- .
T Consensus 156 kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L-evLDlqDNtft~~gS~~ 233 (388)
T COG5238 156 KPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL-EVLDLQDNTFTLEGSRY 233 (388)
T ss_pred CCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc-eeeeccccchhhhhHHH
Confidence 466777777777653 2221 1111146777777777653210 1123355677 888888888762 2
Q ss_pred CchhhhcCCCCCEEEccCCeecccCCCc----cC---CCCccEEEccCCeecccCCcc-------ccCCCCCcEEECCCC
Q 038788 206 FPAEVGKLKNLISLDISSNMFSSEISTT----LG---CTSLEYLCMQDNSFIGSIPST-------LSSLKSITELDLSCN 271 (278)
Q Consensus 206 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~----~~---~~~L~~l~l~~n~~~~~~~~~-------~~~~~~L~~L~l~~n 271 (278)
+...+..++.|+.|.+..|.++...... +. .|+|..|...+|...+.+... -..+|-|..+.+.+|
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 3455667778888888888876543321 11 678888888888765432211 245788888888888
Q ss_pred ccc
Q 038788 272 NLS 274 (278)
Q Consensus 272 ~l~ 274 (278)
+++
T Consensus 314 r~~ 316 (388)
T COG5238 314 RIK 316 (388)
T ss_pred cch
Confidence 875
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.1e-09 Score=83.12 Aligned_cols=167 Identities=14% Similarity=0.098 Sum_probs=112.5
Q ss_pred CCCcccccceecccc-ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccc-cccc-CCchhhcccccc
Q 038788 1 MNTIRNIFSGKVSIN-FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANR-FGGA-LPFSLANLSTTM 77 (278)
Q Consensus 1 L~l~~n~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~-~~~~~~~~~~~L 77 (278)
||||+..|+...... ++.+++|+-|.+.+.++.+ ++...+.+..+|+.|+++.+. ++.. +...+.++.. |
T Consensus 190 lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~-L 262 (419)
T KOG2120|consen 190 LDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR-L 262 (419)
T ss_pred hhcchhheeHHHHHHHHHHHHhhhhccccccccCc------HHHHHHhccccceeeccccccccchhHHHHHHHhhhh-H
Confidence 577888887654433 5778889999998888887 566778888889999998774 4422 2233445555 8
Q ss_pred cEEEeecCeeeecC-Cccccc-cCCcceecccccccchh---------hhccccEEEeeccc-ccccCCCCCCCcccccE
Q 038788 78 TGIAIGNNQISCFI-PDGIAN-LVNLNALGVEFNQLAVT---------ILKSLQMLFLHENI-LQGTIPCSLGNLTMLTQ 145 (278)
Q Consensus 78 ~~L~l~~~~~~~~~-~~~l~~-l~~L~~L~l~~~~l~~~---------~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~ 145 (278)
..|+++.|.+.... ...+.. -++|..|+++++.-... .+++|.+||++.+- +.......+..++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 88888888754321 111122 25677888887743211 18889999998763 44455566778899999
Q ss_pred EEcccCcccccCCc---CccCCCCCcEEEeecCc
Q 038788 146 RLLEVNDLLGNIPP---SIGNCKNLILLTTRKNK 176 (278)
Q Consensus 146 L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~~~ 176 (278)
|.++.|.. ..|. .+...|+|.+|++-++-
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 99988753 3332 45677888888886653
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=5.6e-07 Score=71.31 Aligned_cols=219 Identities=19% Similarity=0.172 Sum_probs=133.8
Q ss_pred CCccEEEeecccccc-cCCchhhcccccccEEEeecCeeee--cCCccccccCCcceecccccccchhh------hcccc
Q 038788 50 TKLGVLVLDANRFGG-ALPFSLANLSTTMTGIAIGNNQISC--FIPDGIANLVNLNALGVEFNQLAVTI------LKSLQ 120 (278)
Q Consensus 50 ~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~l~~~~------~~~L~ 120 (278)
..+.-+.+.++.|.. ..-..|+...+.++++++.+|+++. .+...+.++|+|+.|+++.|.+.... ..+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 345566666666642 2334566666669999999999874 23344678999999999999987654 45788
Q ss_pred EEEeecccccc-cCCCCCCCcccccEEEcccCcccccC--CcCccC-CCCCcEEEeecCcCcc--cCCCCccccccccee
Q 038788 121 MLFLHENILQG-TIPCSLGNLTMLTQRLLEVNDLLGNI--PPSIGN-CKNLILLTTRKNKPSG--TMPRQLPRIITLSVL 194 (278)
Q Consensus 121 ~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~-~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~~ 194 (278)
.+-+.+.++.- .....+..+|.+++|.++.|.+.... ...... -+.++++...+|.... ....-...++++ ..
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv-~s 203 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV-NS 203 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc-hh
Confidence 88888887752 23345566889999999998553211 111111 2345555554443210 001111223445 56
Q ss_pred EEccCCcCcc-cCchhhhcCCCCCEEEccCCeecccCC--CccCCCCccEEEccCCeecccCCc------cccCCCCCcE
Q 038788 195 LNLSDNLLSG-HFPAEVGKLKNLISLDISSNMFSSEIS--TTLGCTSLEYLCMQDNSFIGSIPS------TLSSLKSITE 265 (278)
Q Consensus 195 L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~------~~~~~~~L~~ 265 (278)
+.+..+.+.. ...+.....+.+..|+|+.+++.++.. ..-++++|.-+.++++.+.+.... .++.+++++.
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 6777776652 234445556677788888888876422 222388888888888877643221 2466777777
Q ss_pred EECC
Q 038788 266 LDLS 269 (278)
Q Consensus 266 L~l~ 269 (278)
|+=+
T Consensus 284 LNGs 287 (418)
T KOG2982|consen 284 LNGS 287 (418)
T ss_pred ecCc
Confidence 6643
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=1e-06 Score=49.81 Aligned_cols=38 Identities=34% Similarity=0.528 Sum_probs=25.7
Q ss_pred CCccEEEccCCeecccCCccccCCCCCcEEECCCCcccc
Q 038788 237 TSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSG 275 (278)
Q Consensus 237 ~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 275 (278)
++|++|++++|+++ .++..+.++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35777777777777 455557777777777777777764
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=8.4e-08 Score=67.24 Aligned_cols=104 Identities=28% Similarity=0.355 Sum_probs=73.3
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCC
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVN 100 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 100 (278)
.+-.+++++|++.... +.+..+.....|+..++++|.+. .+|..|....+-++.|++.+|+++ .+|..++.++.
T Consensus 28 E~h~ldLssc~lm~i~----davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIA----DAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA 101 (177)
T ss_pred HhhhcccccchhhHHH----HHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH
Confidence 3556788888766432 22334555667888899999988 777777766655889999999988 57778899999
Q ss_pred cceecccccccchhh-----hccccEEEeeccccc
Q 038788 101 LNALGVEFNQLAVTI-----LKSLQMLFLHENILQ 130 (278)
Q Consensus 101 L~~L~l~~~~l~~~~-----~~~L~~l~l~~~~~~ 130 (278)
|+.|+++.|++.... +.++..|+..+|.+.
T Consensus 102 Lr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 102 LRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 999999988875432 445555555555544
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.16 E-value=8.1e-06 Score=68.74 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=43.1
Q ss_pred ccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEee
Q 038788 46 LTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLH 125 (278)
Q Consensus 46 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~ 125 (278)
+..|+++++|++++|.++ .+| .++.+|++|.+++|.--...|..+ .++|+.|.+++|.........|+.|++.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~L~ 120 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSLEIK 120 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceEEeC
Confidence 455677777777777666 555 345557777777644222344433 2467777777663222234556666665
Q ss_pred ccc
Q 038788 126 ENI 128 (278)
Q Consensus 126 ~~~ 128 (278)
.+.
T Consensus 121 ~n~ 123 (426)
T PRK15386 121 GSA 123 (426)
T ss_pred CCC
Confidence 443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=2.9e-07 Score=64.60 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=81.9
Q ss_pred CCCcccccce--eccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhccccccc
Q 038788 1 MNTIRNIFSG--KVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMT 78 (278)
Q Consensus 1 L~l~~n~~~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 78 (278)
+||+.|.+.- ..+..+.+..+|..+++++|.+...++ ++-...+.++.+++++|++. .+|..+..++. |+
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~------kft~kf~t~t~lNl~~neis-dvPeE~Aam~a-Lr 103 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPK------KFTIKFPTATTLNLANNEIS-DVPEELAAMPA-LR 103 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCH------HHhhccchhhhhhcchhhhh-hchHHHhhhHH-hh
Confidence 4677776652 344456677789999999999986543 23344568999999999999 88999999988 99
Q ss_pred EEEeecCeeeecCCccccccCCcceecccccccc
Q 038788 79 GIAIGNNQISCFIPDGIANLVNLNALGVEFNQLA 112 (278)
Q Consensus 79 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 112 (278)
.|+++.|.+. ..|..+..+.++-.|+..+|...
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 9999999988 56777888999999999888764
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=2.2e-06 Score=77.73 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=38.8
Q ss_pred cccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeee-cCCccccc
Q 038788 19 LQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISC-FIPDGIAN 97 (278)
Q Consensus 19 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~ 97 (278)
+|.|++|.+++-++... .+.....++++|..||+|+..++. + .++..+.. |+.|.+++=.+.. ..-..+..
T Consensus 147 LPsL~sL~i~~~~~~~~-----dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~Lkn-Lq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDND-----DFSQLCASFPNLRSLDISGTNISN-L-SGISRLKN-LQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred CcccceEEecCceecch-----hHHHHhhccCccceeecCCCCccC-c-HHHhcccc-HHHHhccCCCCCchhhHHHHhc
Confidence 45555555555444332 233334445555555555555542 1 34444444 5555555433321 11123445
Q ss_pred cCCcceecccccc
Q 038788 98 LVNLNALGVEFNQ 110 (278)
Q Consensus 98 l~~L~~L~l~~~~ 110 (278)
+++|+.||+|..+
T Consensus 219 L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 219 LKKLRVLDISRDK 231 (699)
T ss_pred ccCCCeeeccccc
Confidence 5555555555543
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.99 E-value=8e-07 Score=69.59 Aligned_cols=176 Identities=17% Similarity=0.182 Sum_probs=109.6
Q ss_pred CCCcccccceecccccc----CcccccEEecCCCCCCCccCC----Cc-cccccccCCCCccEEEeecccccccCCchh-
Q 038788 1 MNTIRNIFSGKVSINFG----GLQNLSWLNLGKNNLGTWTTN----DL-HFITFLTNCTKLGVLVLDANRFGGALPFSL- 70 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~----~l~~L~~l~l~~~~~~~~~~~----~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~- 70 (278)
+|+|+|-|.-.....++ +-++|+..+++.- ++|..-+ .+ -+.+.+-+|++|+.+++|.|-+....|..+
T Consensus 35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~ 113 (388)
T COG5238 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG 113 (388)
T ss_pred EeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence 48899999876665554 4567888888765 3332111 11 234567789999999999998876666543
Q ss_pred ---hcccccccEEEeecCeeeec----CCcc---------ccccCCcceecccccccchhh----------hccccEEEe
Q 038788 71 ---ANLSTTMTGIAIGNNQISCF----IPDG---------IANLVNLNALGVEFNQLAVTI----------LKSLQMLFL 124 (278)
Q Consensus 71 ---~~~~~~L~~L~l~~~~~~~~----~~~~---------l~~l~~L~~L~l~~~~l~~~~----------~~~L~~l~l 124 (278)
.+..+ |+.|.+++|.+.-. +... .+.-|.|+......|++.... ...|+.+.+
T Consensus 114 d~is~~t~-l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki 192 (388)
T COG5238 114 DLISSSTD-LVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKI 192 (388)
T ss_pred HHHhcCCC-ceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEe
Confidence 34455 99999999876421 1111 133467888888888774322 336777777
Q ss_pred ecccccccCCC-----CCCCcccccEEEcccCccccc----CCcCccCCCCCcEEEeecCcCc
Q 038788 125 HENILQGTIPC-----SLGNLTMLTQRLLEVNDLLGN----IPPSIGNCKNLILLTTRKNKPS 178 (278)
Q Consensus 125 ~~~~~~~~~~~-----~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 178 (278)
..|.+...... .+.-+.+|+.|++.+|-++.. +..++..|+.|+.|.+.+|-++
T Consensus 193 ~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 193 QQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 77777643211 222346677777777766533 2234455666777777666554
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=5.2e-06 Score=46.91 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=20.5
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccccc
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFG 63 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 63 (278)
+|++|++++|+|+.++ ..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~-------~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLP-------PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHG-------GHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccC-------chHhCCCCCCEEEecCCCCC
Confidence 5666666666666432 22566666666666666665
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.93 E-value=4.5e-05 Score=64.34 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=81.3
Q ss_pred ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecC-eeeecCCcc
Q 038788 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNN-QISCFIPDG 94 (278)
Q Consensus 16 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~ 94 (278)
+..+.+++.|++++|.++..+ .+| .+|++|.+++|.--..+|..+ +.+|++|.+++| .+. .+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP----~LP------~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP----VLP------NELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE- 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC----CCC------CCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc-
Confidence 345788999999999888653 111 369999998874333667544 445999999998 444 3443
Q ss_pred ccccCCcceecccccccchh--hhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEe
Q 038788 95 IANLVNLNALGVEFNQLAVT--ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTT 172 (278)
Q Consensus 95 l~~l~~L~~L~l~~~~l~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 172 (278)
.|+.|++..+..... ..++|+.|.+.++.........-.-.++|++|++++|... ..|..+. .+|+.|++
T Consensus 113 -----sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 113 -----SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred -----ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 466666665554321 1456777776543211010000011256888888776643 3343333 57777777
Q ss_pred ecC
Q 038788 173 RKN 175 (278)
Q Consensus 173 ~~~ 175 (278)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.91 E-value=1.8e-05 Score=59.37 Aligned_cols=73 Identities=23% Similarity=0.160 Sum_probs=32.1
Q ss_pred ccEEEeecCeeeecCCccccccCCcceecccccccchhh-------hccccEEEeecccccccC---CCCCCCcccccEE
Q 038788 77 MTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI-------LKSLQMLFLHENILQGTI---PCSLGNLTMLTQR 146 (278)
Q Consensus 77 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-------~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~L 146 (278)
|.+|.+.+|.|+.+.|.--..+++|+.|.+.+|.+.-.+ +|+|++|.+-+|.++..- ...+..+++|+.|
T Consensus 66 L~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~L 145 (233)
T KOG1644|consen 66 LHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTL 145 (233)
T ss_pred cceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEe
Confidence 444444444444443333333444444444444442211 445555555555444211 1123345566666
Q ss_pred Ecc
Q 038788 147 LLE 149 (278)
Q Consensus 147 ~l~ 149 (278)
|+.
T Consensus 146 DF~ 148 (233)
T KOG1644|consen 146 DFQ 148 (233)
T ss_pred ehh
Confidence 654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=5e-05 Score=57.11 Aligned_cols=102 Identities=19% Similarity=0.081 Sum_probs=58.8
Q ss_pred cccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCccc-CchhhhcCCCCCEEE
Q 038788 142 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH-FPAEVGKLKNLISLD 220 (278)
Q Consensus 142 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ 220 (278)
....+|+++|++.. .+.|..++.|.+|.++.|.++...|.--..++++ +.|.+.+|.+... -..-+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l-~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNL-KTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhcccc-ceEEecCcchhhhhhcchhccCCccceee
Confidence 45567777777642 2356666777777777777775555444445556 6667777776611 012345566777777
Q ss_pred ccCCeecccCC----CccCCCCccEEEccC
Q 038788 221 ISSNMFSSEIS----TTLGCTSLEYLCMQD 246 (278)
Q Consensus 221 L~~n~~~~~~~----~~~~~~~L~~l~l~~ 246 (278)
+-+|.++...- ....+|+|+.||..+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77766654211 111256666666553
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=1e-05 Score=73.47 Aligned_cols=131 Identities=16% Similarity=0.132 Sum_probs=88.1
Q ss_pred CCccEEEeeccc-ccccCCchhhcccccccEEEeecCeeeec-CCccccccCCcceecccccccchhh----hccccEEE
Q 038788 50 TKLGVLVLDANR-FGGALPFSLANLSTTMTGIAIGNNQISCF-IPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLF 123 (278)
Q Consensus 50 ~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~----~~~L~~l~ 123 (278)
.+|++|++++.. +....|..++.+.+.|+.|.+.+-.+... ......++|+|..||++++.++... +.+|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 678888888874 34456777888877788888888665422 2233567888888898888876432 77788877
Q ss_pred eecccccc-cCCCCCCCcccccEEEcccCcccccC------CcCccCCCCCcEEEeecCcCccc
Q 038788 124 LHENILQG-TIPCSLGNLTMLTQRLLEVNDLLGNI------PPSIGNCKNLILLTTRKNKPSGT 180 (278)
Q Consensus 124 l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~ 180 (278)
+.+-.+.. .--..+..+++|+.||+|........ -+.-..+|+|+.||.++..+++.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 77766553 11124566888888998876543221 01113478899999988776643
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.71 E-value=2.1e-05 Score=61.36 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=62.1
Q ss_pred eccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecc--cccccCCchhhcccccccEEEeecCeee
Q 038788 11 KVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDAN--RFGGALPFSLANLSTTMTGIAIGNNQIS 88 (278)
Q Consensus 11 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 88 (278)
++......+..|+.+++.+..++.... +-.+++|++|.++.| .+.+.++-..-.+ ++|++|++++|++.
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt~~~--------~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTTLTN--------FPKLPKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGNKIK 104 (260)
T ss_pred Ccccccccccchhhhhhhccceeeccc--------CCCcchhhhhcccCCcccccccceehhhhC-CceeEEeecCCccc
Confidence 455556667778888888887776532 566788899999888 4444444334444 44899999988876
Q ss_pred ec-CCccccccCCcceecccccccch
Q 038788 89 CF-IPDGIANLVNLNALGVEFNQLAV 113 (278)
Q Consensus 89 ~~-~~~~l~~l~~L~~L~l~~~~l~~ 113 (278)
.. .-..+..+++|..|++..|..+.
T Consensus 105 ~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 105 DLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cccccchhhhhcchhhhhcccCCccc
Confidence 31 11224556677778887776653
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.49 E-value=1.7e-06 Score=71.61 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=55.4
Q ss_pred CCCCCcEEEeecCcCcccCC-CCc-ccccccceeEEccCCcCc--ccCchhhhcCCCCCEEEccCCe-ecccCC-----C
Q 038788 163 NCKNLILLTTRKNKPSGTMP-RQL-PRIITLSVLLNLSDNLLS--GHFPAEVGKLKNLISLDISSNM-FSSEIS-----T 232 (278)
Q Consensus 163 ~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~~L~l~~n~~~--~~~~~~~~~~~~L~~L~L~~n~-~~~~~~-----~ 232 (278)
.+++|+.+.+.+|+.-+... ..+ ..++.| +.+++.+.... +.+..--.+++.|+++.++++. +++..- .
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L-e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHL-ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhh-hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 35666777666665321111 111 234445 55566555433 1122222456677777777663 333211 1
Q ss_pred ccCCCCccEEEccCCeec-ccCCccccCCCCCcEEECCCCc
Q 038788 233 TLGCTSLEYLCMQDNSFI-GSIPSTLSSLKSITELDLSCNN 272 (278)
Q Consensus 233 ~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~ 272 (278)
...+..|+.+-+++++.. +...+.+..|++|+.+++-+++
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 112566677777776533 3344455667777777766654
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.33 E-value=0.002 Score=45.76 Aligned_cols=123 Identities=14% Similarity=0.157 Sum_probs=55.6
Q ss_pred CCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCC
Q 038788 135 CSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLK 214 (278)
Q Consensus 135 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~ 214 (278)
..|..+++|+.+.+.. .+.......|..+++++.+.+..+ +.......+..+.++ +.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l-~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSL-ESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT--EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccc-ccccccc-cccccccccccccc
Confidence 4566666777777764 344334455677777887777664 443344455566566 7777765 33323334566677
Q ss_pred CCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCc
Q 038788 215 NLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSIT 264 (278)
Q Consensus 215 ~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 264 (278)
+|+.+.+..+ +.......+. + +++.+.+.. .+.......|.+|++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 8888888665 4444444455 5 777777765 33323444566666653
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=2e-05 Score=62.18 Aligned_cols=95 Identities=23% Similarity=0.216 Sum_probs=68.8
Q ss_pred cccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecC-Cccccc
Q 038788 19 LQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFI-PDGIAN 97 (278)
Q Consensus 19 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~ 97 (278)
+.+.+.|++++|.++++ ....+++.|+.|.||-|+|+. + ..+..+.. |++|+|+.|.|.... -..+.+
T Consensus 18 l~~vkKLNcwg~~L~DI--------sic~kMp~lEVLsLSvNkIss-L-~pl~rCtr-LkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--------SICEKMPLLEVLSLSVNKISS-L-APLQRCTR-LKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHHhhhhcccCCCccHH--------HHHHhcccceeEEeecccccc-c-hhHHHHHH-HHHHHHHhcccccHHHHHHHhc
Confidence 45677888899988875 335678889999999998873 3 34666777 999999998876431 234677
Q ss_pred cCCcceecccccccchhh-----------hccccEEEe
Q 038788 98 LVNLNALGVEFNQLAVTI-----------LKSLQMLFL 124 (278)
Q Consensus 98 l~~L~~L~l~~~~l~~~~-----------~~~L~~l~l 124 (278)
+|+|+.|.|..|.=.... +|+|++||-
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 888899988888653321 778887763
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.00 E-value=4.3e-05 Score=63.49 Aligned_cols=241 Identities=17% Similarity=0.136 Sum_probs=122.9
Q ss_pred CcccccEEecCCC-CCCCccCCCccccccccCCCCccEEEeeccc-cccc-CCchhhcccccccEEEeecCeeeec--CC
Q 038788 18 GLQNLSWLNLGKN-NLGTWTTNDLHFITFLTNCTKLGVLVLDANR-FGGA-LPFSLANLSTTMTGIAIGNNQISCF--IP 92 (278)
Q Consensus 18 ~l~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~-~~~~~~~~~~~L~~L~l~~~~~~~~--~~ 92 (278)
.+++|+++++..| .++... +...-..|++|++++++.|. +.+. +-.-+.++.. ++.+..++|.=.+. +-
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~-----Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~-l~~~~~kGC~e~~le~l~ 261 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVS-----LKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKE-LEKLSLKGCLELELEALL 261 (483)
T ss_pred hcchhhhhhhcccchhHHHH-----HHHHHHhhhhHHHhhhccCchhhcCcchHHhccchh-hhhhhhcccccccHHHHH
Confidence 5788999999884 455431 22234568999999999884 4431 1111222333 66666665431100 00
Q ss_pred ccccccCCcceecccccc-cchhh-------hccccEEEeecccc-cccCCCCC-CCcccccEEEcccCcccc-cCCcCc
Q 038788 93 DGIANLVNLNALGVEFNQ-LAVTI-------LKSLQMLFLHENIL-QGTIPCSL-GNLTMLTQRLLEVNDLLG-NIPPSI 161 (278)
Q Consensus 93 ~~l~~l~~L~~L~l~~~~-l~~~~-------~~~L~~l~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~n~~~~-~~~~~~ 161 (278)
..=+++..+..+++..+. ++... +.+|+.+..+++.- ++..-..+ .+.++|+.+-++.+..-+ .....+
T Consensus 262 ~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l 341 (483)
T KOG4341|consen 262 KAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML 341 (483)
T ss_pred HHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh
Confidence 011234455556654542 33322 66777777776543 22222222 235677777777665211 111222
Q ss_pred -cCCCCCcEEEeecCcCcc--cCCCCcccccccceeEEccCCcCc-cc----CchhhhcCCCCCEEEccCCeecc-cCCC
Q 038788 162 -GNCKNLILLTTRKNKPSG--TMPRQLPRIITLSVLLNLSDNLLS-GH----FPAEVGKLKNLISLDISSNMFSS-EIST 232 (278)
Q Consensus 162 -~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~~L~l~~n~~~-~~----~~~~~~~~~~L~~L~L~~n~~~~-~~~~ 232 (278)
.+++.|+.+++.++.... .+...-..++.+ +++.++++... ++ +...-..+..|+.+.++++.... ..-.
T Consensus 342 ~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l-r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 342 GRNCPHLERLDLEECGLITDGTLASLSRNCPRL-RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hcCChhhhhhcccccceehhhhHhhhccCCchh-ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 356777777777665421 123333455666 77777765432 21 11122345667777777775542 2222
Q ss_pred ccC-CCCccEEEccCCe-eccc-CCccccCCCCCcE
Q 038788 233 TLG-CTSLEYLCMQDNS-FIGS-IPSTLSSLKSITE 265 (278)
Q Consensus 233 ~~~-~~~L~~l~l~~n~-~~~~-~~~~~~~~~~L~~ 265 (278)
... +++|+.+++-+++ ++.. +.....++|+++.
T Consensus 421 ~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred HHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 222 6777777777665 2221 3333455665554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.98 E-value=0.00049 Score=53.87 Aligned_cols=60 Identities=22% Similarity=0.139 Sum_probs=29.0
Q ss_pred ccccEEEcccCcccccCCcCccCCCCCcEEEeecC--cCcccCCCCcccccccceeEEccCCcCc
Q 038788 141 TMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKN--KPSGTMPRQLPRIITLSVLLNLSDNLLS 203 (278)
Q Consensus 141 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~~L~l~~n~~~ 203 (278)
..++.+.+.+..++. ...+..+++|+.|.++.| .+...++.....++++ +++++++|+|.
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l-~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNL-KVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCce-eEEeecCCccc
Confidence 344444444443331 123445556666666665 3443444434444555 55555555555
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.76 E-value=0.0079 Score=42.60 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=33.6
Q ss_pred CCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcC
Q 038788 134 PCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKL 213 (278)
Q Consensus 134 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~ 213 (278)
...|..+++++.+.+..+ +.......+..+++++.+.+.. .+.......+..+.++ +.+.+..+ +.......+..+
T Consensus 28 ~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l-~~i~~~~~-~~~i~~~~f~~~ 103 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL-KNIDIPSN-ITEIGSSSFSNC 103 (129)
T ss_dssp TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE-CEEEETTT--BEEHTTTTTT-
T ss_pred hhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc-cccccCcc-ccEEchhhhcCC
Confidence 344555555666665543 3322333455555566666643 2222233344445555 55555443 331222334444
Q ss_pred CCCCEEEccC
Q 038788 214 KNLISLDISS 223 (278)
Q Consensus 214 ~~L~~L~L~~ 223 (278)
+++.+.+..
T Consensus 104 -~l~~i~~~~ 112 (129)
T PF13306_consen 104 -NLKEINIPS 112 (129)
T ss_dssp -T--EEE-TT
T ss_pred -CceEEEECC
Confidence 666666554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=7e-05 Score=59.17 Aligned_cols=80 Identities=25% Similarity=0.277 Sum_probs=61.7
Q ss_pred cCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCc--hhhcccccccEEEeecCeeeecCCc-
Q 038788 17 GGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPF--SLANLSTTMTGIAIGNNQISCFIPD- 93 (278)
Q Consensus 17 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~- 93 (278)
.+|+-|++|.|+-|+|+...+ +..|++|++|+|..|.|.+ +.+ -+.+++. |+.|++..|...+.-+.
T Consensus 38 ~kMp~lEVLsLSvNkIssL~p--------l~rCtrLkElYLRkN~I~s-ldEL~YLknlps-Lr~LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAP--------LQRCTRLKELYLRKNCIES-LDELEYLKNLPS-LRTLWLDENPCCGEAGQN 107 (388)
T ss_pred HhcccceeEEeeccccccchh--------HHHHHHHHHHHHHhccccc-HHHHHHHhcCch-hhhHhhccCCcccccchh
Confidence 478999999999999998855 8999999999999998873 221 1334455 99999999886554332
Q ss_pred ----cccccCCcceecc
Q 038788 94 ----GIANLVNLNALGV 106 (278)
Q Consensus 94 ----~l~~l~~L~~L~l 106 (278)
.+..+|+|+.||-
T Consensus 108 YR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 108 YRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHHHHHHHcccchhccC
Confidence 3567899998873
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.70 E-value=8.3e-05 Score=65.39 Aligned_cols=106 Identities=17% Similarity=0.111 Sum_probs=54.9
Q ss_pred cccccEEecCCCC-CCCccCCCccccccccCCCCccEEEeecc-cccccCC---chhhcccccccEEEeecCe-eeecCC
Q 038788 19 LQNLSWLNLGKNN-LGTWTTNDLHFITFLTNCTKLGVLVLDAN-RFGGALP---FSLANLSTTMTGIAIGNNQ-ISCFIP 92 (278)
Q Consensus 19 l~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~ 92 (278)
++.|+.+.+..+. ++.. .+......++.|++|+++++ ......+ ..+.....+|+.|+++.+. ++...-
T Consensus 187 ~~~L~~l~l~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDD-----SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred CchhhHhhhcccccCChh-----hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence 5666666666663 2221 13344566777777777662 1111111 1222222347777777766 443322
Q ss_pred cccc-ccCCcceecccccc-cchhh-------hccccEEEeecccc
Q 038788 93 DGIA-NLVNLNALGVEFNQ-LAVTI-------LKSLQMLFLHENIL 129 (278)
Q Consensus 93 ~~l~-~l~~L~~L~l~~~~-l~~~~-------~~~L~~l~l~~~~~ 129 (278)
..++ .+++|+.|.+..+. ++..+ ++.|++|+++.+..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2222 25677777766665 44333 56677777776544
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.26 E-value=0.0016 Score=30.56 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=5.5
Q ss_pred ccEEEeeccccc
Q 038788 52 LGVLVLDANRFG 63 (278)
Q Consensus 52 L~~L~l~~~~l~ 63 (278)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.90 E-value=0.0042 Score=27.05 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=8.2
Q ss_pred CCCcEEECCCCcccccCC
Q 038788 261 KSITELDLSCNNLSGHIP 278 (278)
Q Consensus 261 ~~L~~L~l~~n~l~~~~p 278 (278)
++|++|++++|+++ ++|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 35677777777765 443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.66 E-value=0.0069 Score=28.35 Aligned_cols=18 Identities=50% Similarity=0.831 Sum_probs=9.0
Q ss_pred ccEEEccCCeecccCCccc
Q 038788 239 LEYLCMQDNSFIGSIPSTL 257 (278)
Q Consensus 239 L~~l~l~~n~~~~~~~~~~ 257 (278)
|++|++++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.60 E-value=4.4e-05 Score=66.46 Aligned_cols=174 Identities=20% Similarity=0.177 Sum_probs=90.0
Q ss_pred CCccccccee----ccccccCcccccEEecCCCCCCCccCCCccccccccCC-CCccEEEeeccccccc----CCchhhc
Q 038788 2 NTIRNIFSGK----VSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNC-TKLGVLVLDANRFGGA----LPFSLAN 72 (278)
Q Consensus 2 ~l~~n~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~----~~~~~~~ 72 (278)
++.+|.+... +...+...+.|+.+++++|.+.+.... .+...+... ..|++|++..|.++.. ++..+..
T Consensus 93 ~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~--~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~ 170 (478)
T KOG4308|consen 93 SLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGAR--LLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK 170 (478)
T ss_pred hhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHH--HHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc
Confidence 3445555443 223344566777777777777642211 233334443 4566666666666533 3344444
Q ss_pred ccccccEEEeecCeeee----cCCcccc----ccCCcceecccccccchhh----------hcc-ccEEEeeccccccc-
Q 038788 73 LSTTMTGIAIGNNQISC----FIPDGIA----NLVNLNALGVEFNQLAVTI----------LKS-LQMLFLHENILQGT- 132 (278)
Q Consensus 73 ~~~~L~~L~l~~~~~~~----~~~~~l~----~l~~L~~L~l~~~~l~~~~----------~~~-L~~l~l~~~~~~~~- 132 (278)
...++.++++.|.+.. ..+..+. ...++++|.++++.++... .+. +.++++..|.+.+.
T Consensus 171 -~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g 249 (478)
T KOG4308|consen 171 -NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVG 249 (478)
T ss_pred -ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHH
Confidence 3336777777766531 1122222 3556777777777665332 222 44466666665532
Q ss_pred ---CCCCCCCc-ccccEEEcccCcccccCC----cCccCCCCCcEEEeecCcCc
Q 038788 133 ---IPCSLGNL-TMLTQRLLEVNDLLGNIP----PSIGNCKNLILLTTRKNKPS 178 (278)
Q Consensus 133 ---~~~~~~~~-~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~ 178 (278)
....+..+ ..++.++++.|.++.... ..+..++.++.+.+..|.+.
T Consensus 250 ~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 250 VEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22233333 455677777776654322 23345556666666666654
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0017 Score=49.03 Aligned_cols=83 Identities=13% Similarity=0.072 Sum_probs=55.5
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccc-ccccCCchhhcccccccEEEeecCe-eeecCCcccccc
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANR-FGGALPFSLANLSTTMTGIAIGNNQ-ISCFIPDGIANL 98 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l 98 (278)
.++.+|-+++.|... ..+.+.+++.++.|.+.+|. +.+..-+-+++..++|+.|++++|. ||+..-..+..+
T Consensus 102 ~IeaVDAsds~I~~e------Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE------GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred eEEEEecCCchHHHH------HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 467888888877653 33557778888888888884 4433344455566678888888765 665444445667
Q ss_pred CCcceeccccc
Q 038788 99 VNLNALGVEFN 109 (278)
Q Consensus 99 ~~L~~L~l~~~ 109 (278)
++|+.|.+.+-
T Consensus 176 knLr~L~l~~l 186 (221)
T KOG3864|consen 176 KNLRRLHLYDL 186 (221)
T ss_pred hhhHHHHhcCc
Confidence 77777777643
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.34 E-value=0.0018 Score=57.02 Aligned_cols=96 Identities=18% Similarity=0.042 Sum_probs=61.0
Q ss_pred cccCcccccEEecCCC-CCCCccCCCccccccccCCCCccEEEeeccc-ccccCCchhhcccccccEEEeecCe-eeecC
Q 038788 15 NFGGLQNLSWLNLGKN-NLGTWTTNDLHFITFLTNCTKLGVLVLDANR-FGGALPFSLANLSTTMTGIAIGNNQ-ISCFI 91 (278)
Q Consensus 15 ~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~ 91 (278)
....+++|+.++++++ ......+. ........|++|+.++++.+. +++..-..+....++|++|.+.++. ++...
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g 286 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPL--LLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG 286 (482)
T ss_pred HHhhCchhheecccCcccccccchh--HhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH
Confidence 3456889999999873 22221111 122345667889999999887 6644444454433459999977776 44322
Q ss_pred -CccccccCCcceecccccccc
Q 038788 92 -PDGIANLVNLNALGVEFNQLA 112 (278)
Q Consensus 92 -~~~l~~l~~L~~L~l~~~~l~ 112 (278)
......++.|++|+++++...
T Consensus 287 l~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 287 LVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHHHhcCcccEEeeecCccc
Confidence 223456788999999988653
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.29 E-value=4.4e-05 Score=66.47 Aligned_cols=179 Identities=22% Similarity=0.182 Sum_probs=97.2
Q ss_pred ccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCch----hhcccccccEEEeecCeeeecC----Cc
Q 038788 22 LSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFS----LANLSTTMTGIAIGNNQISCFI----PD 93 (278)
Q Consensus 22 L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~----~~ 93 (278)
+..+++.+|.+...... .+...+...+.|..|+++.|.+.+..... +....+.+++|++..|.++... ..
T Consensus 89 l~~L~L~~~~l~~~~~~--~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAE--ELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHH--HHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 67777778877765333 34566777788888888888876432222 2222233666777777665432 33
Q ss_pred cccccCCcceecccccccchhh--------------hccccEEEeeccccccc----CCCCCCCccc-ccEEEcccCccc
Q 038788 94 GIANLVNLNALGVEFNQLAVTI--------------LKSLQMLFLHENILQGT----IPCSLGNLTM-LTQRLLEVNDLL 154 (278)
Q Consensus 94 ~l~~l~~L~~L~l~~~~l~~~~--------------~~~L~~l~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~n~~~ 154 (278)
.+.....++.++++.|.+...+ ..+++++++.+|.++.. ....+...++ +.++++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 3455677888888887764222 23355566666655421 1122233333 445666666554
Q ss_pred cc----CCcCccCC-CCCcEEEeecCcCcccCC----CCcccccccceeEEccCCcCc
Q 038788 155 GN----IPPSIGNC-KNLILLTTRKNKPSGTMP----RQLPRIITLSVLLNLSDNLLS 203 (278)
Q Consensus 155 ~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~~L~l~~n~~~ 203 (278)
.. ..+.+... +.++.+++++|.+++... ..+..++.+ +.+.+..|.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l-~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQL-EELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHH-HHhhcccCccc
Confidence 22 11223333 455666666666654322 223334444 56666666655
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.0041 Score=47.04 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=13.8
Q ss_pred eeEEccCCcCcccCchhhhcCCCCCEEEccCC
Q 038788 193 VLLNLSDNLLSGHFPAEVGKLKNLISLDISSN 224 (278)
Q Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 224 (278)
+.++.++..|..+-.+.+..++.++.|.+.+|
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 34444444444333334444444444444444
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.85 E-value=0.055 Score=25.75 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=9.1
Q ss_pred CCCCcEEECCCCcccc
Q 038788 260 LKSITELDLSCNNLSG 275 (278)
Q Consensus 260 ~~~L~~L~l~~n~l~~ 275 (278)
+++|++|++++|+|++
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 3567777777777664
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.60 E-value=0.0046 Score=47.96 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=68.6
Q ss_pred ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccc
Q 038788 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGI 95 (278)
Q Consensus 16 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 95 (278)
+......+.||++.++... ..+.++-++.|..|+++.|.+. ..|..+....+ ++.+++++|..+ ..|.++
T Consensus 38 i~~~kr~tvld~~s~r~vn-------~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e-~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-------LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRE-TVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred hhccceeeeehhhhhHHHh-------hccchHHHHHHHHHhccHhhHh-hChhhHHHHHH-HHHHHhhccchh-hCCccc
Confidence 4556677888888887653 2344666788889999999887 78888887777 888888888776 678889
Q ss_pred cccCCcceecccccccc
Q 038788 96 ANLVNLNALGVEFNQLA 112 (278)
Q Consensus 96 ~~l~~L~~L~l~~~~l~ 112 (278)
...++++++++.++.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 99999999999988864
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.38 E-value=0.14 Score=24.78 Aligned_cols=14 Identities=57% Similarity=0.721 Sum_probs=9.5
Q ss_pred CCCcEEECCCCccc
Q 038788 261 KSITELDLSCNNLS 274 (278)
Q Consensus 261 ~~L~~L~l~~n~l~ 274 (278)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45667777777666
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.38 E-value=0.14 Score=24.78 Aligned_cols=14 Identities=57% Similarity=0.721 Sum_probs=9.5
Q ss_pred CCCcEEECCCCccc
Q 038788 261 KSITELDLSCNNLS 274 (278)
Q Consensus 261 ~~L~~L~l~~n~l~ 274 (278)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45667777777666
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.41 E-value=0.34 Score=23.58 Aligned_cols=13 Identities=46% Similarity=0.695 Sum_probs=7.8
Q ss_pred CCcEEECCCCccc
Q 038788 262 SITELDLSCNNLS 274 (278)
Q Consensus 262 ~L~~L~l~~n~l~ 274 (278)
+|++|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4556666666655
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.67 E-value=0.01 Score=46.13 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=35.7
Q ss_pred eeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCc
Q 038788 193 VLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNN 272 (278)
Q Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 272 (278)
+.+|++.|.+. .+-..++.++.+..++++.|.+.-.+.++.....+..+++.+|... ..|..+...|+++++++.+|+
T Consensus 45 tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 45 TVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred eeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCc
Confidence 34444444433 2223333444455555555554433333322334444444444433 344455555555555555554
Q ss_pred c
Q 038788 273 L 273 (278)
Q Consensus 273 l 273 (278)
+
T Consensus 123 ~ 123 (326)
T KOG0473|consen 123 F 123 (326)
T ss_pred c
Confidence 4
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.24 E-value=0.62 Score=23.10 Aligned_cols=14 Identities=57% Similarity=0.712 Sum_probs=9.9
Q ss_pred CCCcEEECCCCccc
Q 038788 261 KSITELDLSCNNLS 274 (278)
Q Consensus 261 ~~L~~L~l~~n~l~ 274 (278)
++|++|||++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777765
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.98 E-value=1.1 Score=21.57 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=10.4
Q ss_pred CCCCcEEECCCCc-ccc
Q 038788 260 LKSITELDLSCNN-LSG 275 (278)
Q Consensus 260 ~~~L~~L~l~~n~-l~~ 275 (278)
|+.|++|++++|. +|+
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 4667777777774 543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.48 E-value=1.7 Score=21.20 Aligned_cols=14 Identities=43% Similarity=0.650 Sum_probs=10.4
Q ss_pred CCCcEEECCCCccc
Q 038788 261 KSITELDLSCNNLS 274 (278)
Q Consensus 261 ~~L~~L~l~~n~l~ 274 (278)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46778888888775
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.63 E-value=1.3 Score=39.10 Aligned_cols=63 Identities=29% Similarity=0.295 Sum_probs=34.2
Q ss_pred ccccceeEEccCCcCcc--cCchhhhcCCCCCEEEccCC--eecccCC-CccCCCCccEEEccCCeecc
Q 038788 188 IITLSVLLNLSDNLLSG--HFPAEVGKLKNLISLDISSN--MFSSEIS-TTLGCTSLEYLCMQDNSFIG 251 (278)
Q Consensus 188 ~~~L~~~L~l~~n~~~~--~~~~~~~~~~~L~~L~L~~n--~~~~~~~-~~~~~~~L~~l~l~~n~~~~ 251 (278)
.+.+ ..+.+++|.+.. .+...-...++|+.|+|++| .+..... ...+...|++|.+.+|++..
T Consensus 217 ~p~i-~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEI-LSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred Ccce-eeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3444 566777777651 22222234577888888887 3322111 11124567778888877654
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.31 E-value=1.8 Score=38.22 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=34.1
Q ss_pred CcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecc--cccccCCchhhc--ccccccEEEeecCeee
Q 038788 18 GLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDAN--RFGGALPFSLAN--LSTTMTGIAIGNNQIS 88 (278)
Q Consensus 18 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~l~~~~~~~~~~--~~~~L~~L~l~~~~~~ 88 (278)
+.+.+..+.+++|++..+. ++...-...|+|+.|+|++| .+.. ...+.+ ..+ |++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld----~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~-Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLD----ALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLP-LEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchh----hhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCC-HHHeeecCCccc
Confidence 4566777777777665542 12222334567777777777 3221 111111 224 677777777654
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.90 E-value=12 Score=32.76 Aligned_cols=62 Identities=16% Similarity=0.037 Sum_probs=32.8
Q ss_pred CCccEEEeecccccccCCchhhcccc--cccEEEeecCeeeec---CCccccccCCcceeccccccc
Q 038788 50 TKLGVLVLDANRFGGALPFSLANLST--TMTGIAIGNNQISCF---IPDGIANLVNLNALGVEFNQL 111 (278)
Q Consensus 50 ~~L~~L~l~~~~l~~~~~~~~~~~~~--~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~~~l 111 (278)
..+.+++++.|...+.+|..+..+.. -++.++.+...+... .+-....-++++..+++.|..
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 35778888888777666655444332 244555555443311 112223344566666665544
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.25 E-value=55 Score=35.61 Aligned_cols=33 Identities=24% Similarity=0.124 Sum_probs=27.5
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCC
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGT 34 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 34 (278)
||++|+|+-.-+..|..+++|+.|+|++|-+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 789999997666778899999999999886543
Done!