Query 038788
Match_columns 278
No_of_seqs 166 out of 2888
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 04:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-38 5.7E-43 291.0 20.3 269 2-278 374-721 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.6E-37 1.9E-41 281.0 18.3 270 1-278 274-555 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 5.8E-36 2E-40 259.1 21.0 271 1-278 35-412 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 1.7E-34 5.9E-39 251.3 20.2 267 1-275 37-310 (477)
5 2id5_A Lingo-1, leucine rich r 100.0 7.3E-34 2.5E-38 247.4 19.4 267 1-275 61-334 (477)
6 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-34 3.8E-39 239.1 13.5 248 20-276 50-307 (313)
7 3t6q_A CD180 antigen; protein- 100.0 4.9E-33 1.7E-37 248.9 22.8 268 1-278 259-540 (606)
8 4eco_A Uncharacterized protein 100.0 1.2E-33 4.1E-38 253.7 17.8 262 1-275 211-527 (636)
9 4eco_A Uncharacterized protein 100.0 1.4E-33 4.7E-38 253.3 17.0 268 1-274 86-470 (636)
10 1ogq_A PGIP-2, polygalacturona 100.0 1E-32 3.6E-37 227.3 18.6 226 50-278 50-285 (313)
11 3v47_A TOLL-like receptor 5B a 100.0 2.5E-32 8.6E-37 236.3 21.2 261 4-276 18-386 (455)
12 3t6q_A CD180 antigen; protein- 100.0 1.3E-32 4.3E-37 246.2 19.0 266 1-276 283-562 (606)
13 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-32 5.9E-37 241.2 19.5 262 1-274 26-457 (520)
14 4ecn_A Leucine-rich repeat pro 100.0 1.1E-32 3.7E-37 252.7 18.6 266 1-274 328-710 (876)
15 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-32 1.1E-36 243.6 18.6 156 117-274 376-534 (606)
16 1xku_A Decorin; proteoglycan, 100.0 1.2E-31 4E-36 222.7 20.6 257 1-272 57-330 (330)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.6E-32 2.6E-36 239.1 19.5 119 1-129 57-181 (562)
18 2ft3_A Biglycan; proteoglycan, 100.0 9.1E-32 3.1E-36 223.6 18.8 257 1-272 59-331 (332)
19 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-32 1.9E-36 242.2 18.4 119 159-278 393-514 (606)
20 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-31 1.3E-35 239.6 22.9 275 1-277 253-600 (680)
21 4ecn_A Leucine-rich repeat pro 100.0 1E-31 3.6E-36 246.2 18.6 263 1-275 453-767 (876)
22 3j0a_A TOLL-like receptor 5; m 100.0 7E-32 2.4E-36 249.6 17.4 268 1-275 29-376 (844)
23 3o6n_A APL1; leucine-rich repe 100.0 2.6E-31 8.7E-36 225.6 19.0 259 1-274 74-352 (390)
24 3oja_B Anopheles plasmodium-re 100.0 2.9E-31 9.8E-36 236.9 19.0 259 1-274 80-358 (597)
25 2z63_A TOLL-like receptor 4, v 100.0 4.2E-31 1.4E-35 234.7 19.9 160 117-278 373-535 (570)
26 2z7x_B TOLL-like receptor 1, v 100.0 5.1E-31 1.7E-35 231.8 19.4 262 1-276 50-483 (520)
27 3j0a_A TOLL-like receptor 5; m 100.0 8.6E-31 3E-35 242.3 20.1 222 46-274 119-394 (844)
28 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-30 4.6E-35 236.1 20.1 271 1-273 30-365 (680)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-30 6.1E-35 230.3 20.4 79 1-89 81-160 (562)
30 4fmz_A Internalin; leucine ric 100.0 1.6E-30 5.4E-35 217.3 17.7 253 2-277 50-327 (347)
31 2z63_A TOLL-like receptor 4, v 100.0 1.1E-30 3.7E-35 232.1 17.6 117 161-278 392-511 (570)
32 3o6n_A APL1; leucine-rich repe 100.0 1E-30 3.6E-35 221.9 16.7 235 1-252 98-354 (390)
33 1xku_A Decorin; proteoglycan, 100.0 1.5E-29 5.1E-34 210.1 22.1 256 2-274 37-306 (330)
34 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-31 1.5E-35 233.7 12.1 145 1-152 31-183 (549)
35 2z81_A CD282 antigen, TOLL-lik 100.0 2.6E-30 9E-35 228.6 17.1 112 162-277 384-513 (549)
36 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-29 4.1E-34 210.8 19.3 255 2-274 39-307 (332)
37 3oja_B Anopheles plasmodium-re 100.0 3.2E-30 1.1E-34 230.1 16.5 235 1-252 104-360 (597)
38 2z66_A Variable lymphocyte rec 100.0 1E-29 3.5E-34 208.9 18.0 236 3-250 14-261 (306)
39 4fmz_A Internalin; leucine ric 100.0 1.2E-29 4.2E-34 212.0 17.4 256 1-274 71-346 (347)
40 2z80_A TOLL-like receptor 2, v 100.0 2.2E-30 7.6E-35 217.0 11.4 264 2-277 37-317 (353)
41 4g8a_A TOLL-like receptor 4; l 100.0 8.4E-29 2.9E-33 222.3 21.1 104 1-111 57-160 (635)
42 1o6v_A Internalin A; bacterial 100.0 9.2E-29 3.1E-33 214.6 20.2 251 1-276 73-368 (466)
43 1o6v_A Internalin A; bacterial 100.0 9.6E-29 3.3E-33 214.4 19.5 248 1-275 51-323 (466)
44 4fcg_A Uncharacterized protein 100.0 7.7E-29 2.6E-33 205.4 16.2 234 19-274 80-314 (328)
45 3o53_A Protein LRIM1, AGAP0063 100.0 6.4E-31 2.2E-35 217.1 3.7 256 2-275 16-277 (317)
46 4fcg_A Uncharacterized protein 100.0 3.1E-28 1.1E-32 201.8 18.3 205 49-278 80-294 (328)
47 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-28 5.9E-33 211.8 16.8 200 1-230 47-249 (457)
48 1ozn_A Reticulon 4 receptor; N 100.0 5.2E-29 1.8E-33 202.7 12.1 258 3-271 18-284 (285)
49 3zyi_A Leucine-rich repeat-con 100.0 1.6E-27 5.5E-32 206.0 21.5 241 21-274 55-303 (452)
50 2z66_A Variable lymphocyte rec 100.0 1.1E-28 3.7E-33 202.8 13.1 254 1-261 33-298 (306)
51 3zyj_A Leucine-rich repeat-con 100.0 2E-27 7E-32 204.7 20.7 240 22-274 45-292 (440)
52 1ozn_A Reticulon 4 receptor; N 100.0 4.7E-27 1.6E-31 191.1 20.2 224 22-274 13-238 (285)
53 3zyj_A Leucine-rich repeat-con 100.0 2.2E-27 7.5E-32 204.5 19.1 228 11-250 57-292 (440)
54 3zyi_A Leucine-rich repeat-con 100.0 1.8E-27 6.1E-32 205.7 18.5 227 12-250 69-303 (452)
55 2z80_A TOLL-like receptor 2, v 100.0 2E-28 6.9E-33 205.1 11.9 243 1-253 57-317 (353)
56 1wwl_A Monocyte differentiatio 100.0 1.9E-29 6.4E-34 207.8 4.4 245 16-276 39-311 (312)
57 3o53_A Protein LRIM1, AGAP0063 100.0 8.8E-29 3E-33 204.3 7.3 238 21-274 11-250 (317)
58 3oja_A Leucine-rich immune mol 100.0 1.1E-28 3.6E-33 214.9 8.0 235 17-269 31-270 (487)
59 3bz5_A Internalin-J, INLJ; leu 99.9 4.6E-27 1.6E-31 202.9 17.0 218 8-254 30-250 (457)
60 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-26 7E-31 206.7 20.9 133 141-274 445-580 (635)
61 3oja_A Leucine-rich immune mol 99.9 6.7E-28 2.3E-32 209.9 9.6 219 46-274 30-250 (487)
62 1jl5_A Outer protein YOPM; leu 99.9 1.2E-25 4.1E-30 193.9 22.2 137 21-178 132-270 (454)
63 1jl5_A Outer protein YOPM; leu 99.9 4.6E-26 1.6E-30 196.5 18.9 248 1-278 136-415 (454)
64 3g06_A SSPH2 (leucine-rich rep 99.9 8.6E-26 2.9E-30 200.8 20.3 238 1-278 45-301 (622)
65 1wwl_A Monocyte differentiatio 99.9 7.7E-27 2.6E-31 192.2 12.1 224 1-250 68-309 (312)
66 2z62_A TOLL-like receptor 4, v 99.9 6.7E-26 2.3E-30 183.4 17.4 225 24-277 11-240 (276)
67 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-29 5E-34 219.2 -4.4 272 1-275 61-412 (461)
68 1z7x_W Ribonuclease inhibitor; 99.9 4.4E-29 1.5E-33 216.2 -7.3 273 1-276 8-356 (461)
69 3goz_A Leucine-rich repeat-con 99.9 2.2E-27 7.5E-32 199.4 0.2 221 2-225 4-264 (362)
70 1p9a_G Platelet glycoprotein I 99.9 2.2E-24 7.4E-29 175.6 17.8 203 16-250 6-208 (290)
71 2o6q_A Variable lymphocyte rec 99.9 7.6E-24 2.6E-28 170.8 20.0 180 51-250 38-218 (270)
72 3rfs_A Internalin B, repeat mo 99.9 5.6E-25 1.9E-29 177.6 12.9 211 16-262 37-247 (272)
73 2z62_A TOLL-like receptor 4, v 99.9 1.9E-24 6.6E-29 174.8 16.1 211 12-251 22-238 (276)
74 2ca6_A RAN GTPase-activating p 99.9 4.4E-27 1.5E-31 199.3 -2.0 188 12-203 24-257 (386)
75 3rfs_A Internalin B, repeat mo 99.9 1.4E-24 4.9E-29 175.2 12.5 221 19-278 18-239 (272)
76 1p9a_G Platelet glycoprotein I 99.9 2.5E-23 8.6E-28 169.3 18.5 202 46-274 6-208 (290)
77 2o6q_A Variable lymphocyte rec 99.9 8.4E-23 2.9E-27 164.6 20.0 201 51-274 17-218 (270)
78 2ast_B S-phase kinase-associat 99.9 1.1E-25 3.7E-30 187.1 0.6 243 2-258 53-314 (336)
79 4glp_A Monocyte differentiatio 99.9 1.2E-23 3.9E-28 173.1 10.9 219 51-276 65-309 (310)
80 2xwt_C Thyrotropin receptor; s 99.9 2E-22 6.7E-27 159.6 17.1 194 51-271 32-236 (239)
81 1h6u_A Internalin H; cell adhe 99.9 2.5E-23 8.5E-28 170.8 11.4 193 18-251 39-231 (308)
82 2xwt_C Thyrotropin receptor; s 99.9 1.7E-22 5.9E-27 159.9 14.7 188 62-275 23-219 (239)
83 2ca6_A RAN GTPase-activating p 99.9 1.1E-24 3.8E-29 184.5 1.9 228 1-230 37-319 (386)
84 2ast_B S-phase kinase-associat 99.9 1.8E-24 6E-29 179.9 2.6 243 21-278 48-310 (336)
85 4glp_A Monocyte differentiatio 99.9 4.7E-23 1.6E-27 169.4 10.1 221 21-251 65-308 (310)
86 3m19_A Variable lymphocyte rec 99.9 1E-21 3.5E-26 156.6 16.2 179 76-276 15-194 (251)
87 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-21 1.2E-25 171.3 20.8 219 20-278 40-277 (622)
88 1h6u_A Internalin H; cell adhe 99.9 3.7E-22 1.3E-26 163.8 12.8 186 1-228 46-231 (308)
89 3m19_A Variable lymphocyte rec 99.9 6.5E-21 2.2E-25 151.9 16.5 180 21-229 15-194 (251)
90 3goz_A Leucine-rich repeat-con 99.9 1.8E-23 6.1E-28 175.6 -0.1 226 1-229 27-299 (362)
91 3ogk_B Coronatine-insensitive 99.9 1.1E-23 3.9E-28 187.7 -2.1 271 1-276 169-528 (592)
92 4ay9_X Follicle-stimulating ho 99.9 3.3E-20 1.1E-24 154.9 17.6 222 20-270 30-255 (350)
93 3ogk_B Coronatine-insensitive 99.8 7.6E-23 2.6E-27 182.4 -1.6 227 43-271 286-548 (592)
94 2o6s_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 143.1 12.3 181 53-262 10-190 (208)
95 3cvr_A Invasion plasmid antige 99.8 7.5E-20 2.6E-24 161.0 15.2 181 51-256 60-249 (571)
96 2o6s_A Variable lymphocyte rec 99.8 2.2E-20 7.6E-25 144.6 10.4 153 118-278 29-182 (208)
97 4ay9_X Follicle-stimulating ho 99.8 2.8E-19 9.7E-24 149.3 16.1 205 51-278 31-240 (350)
98 1h6t_A Internalin B; cell adhe 99.8 4.5E-20 1.5E-24 150.2 8.9 172 18-229 44-215 (291)
99 1m9s_A Internalin B; cell inva 99.8 2.3E-19 7.9E-24 159.4 14.2 174 16-229 39-212 (605)
100 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.8E-24 159.9 11.4 184 21-234 60-250 (571)
101 4ezg_A Putative uncharacterize 99.8 5.1E-19 1.7E-23 135.7 13.5 157 112-276 39-196 (197)
102 1m9s_A Internalin B; cell inva 99.8 8.8E-20 3E-24 162.1 9.9 193 19-252 20-212 (605)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 4E-23 136.0 15.1 153 120-276 14-168 (220)
104 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4.2E-23 135.9 15.2 131 142-273 33-164 (220)
105 3e6j_A Variable lymphocyte rec 99.8 2.1E-18 7.3E-23 135.4 15.3 133 116-250 39-172 (229)
106 1h6t_A Internalin B; cell adhe 99.8 6.3E-19 2.1E-23 143.4 11.3 183 54-251 28-214 (291)
107 1dce_A Protein (RAB geranylger 99.8 1.3E-20 4.4E-25 166.4 0.4 204 46-268 345-567 (567)
108 2xot_A Amphoterin-induced prot 99.8 9.3E-19 3.2E-23 146.8 11.3 176 77-274 20-202 (361)
109 2p1m_B Transport inhibitor res 99.8 5.7E-21 1.9E-25 170.3 -2.6 87 186-274 429-519 (594)
110 2xot_A Amphoterin-induced prot 99.8 5.5E-18 1.9E-22 142.0 12.7 176 23-227 21-202 (361)
111 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-17 4.6E-22 130.0 13.7 132 52-203 34-166 (220)
112 1xeu_A Internalin C; cellular 99.7 2.3E-18 8E-23 137.9 8.8 170 18-228 17-186 (263)
113 4ezg_A Putative uncharacterize 99.7 6.7E-18 2.3E-22 129.5 10.9 107 140-250 87-194 (197)
114 2v9t_B SLIT homolog 2 protein 99.7 1.9E-17 6.5E-22 129.1 13.6 152 77-250 13-165 (220)
115 1xeu_A Internalin C; cellular 99.7 5.9E-18 2E-22 135.6 9.7 162 77-251 21-186 (263)
116 2p1m_B Transport inhibitor res 99.7 1.3E-20 4.3E-25 168.1 -7.4 221 48-272 287-542 (594)
117 3e6j_A Variable lymphocyte rec 99.7 6.1E-17 2.1E-21 127.1 14.2 147 77-228 21-173 (229)
118 2ell_A Acidic leucine-rich nuc 99.7 6.8E-17 2.3E-21 120.6 11.3 131 141-274 24-160 (168)
119 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.9E-21 121.5 12.6 109 166-275 30-140 (192)
120 1dce_A Protein (RAB geranylger 99.7 7.2E-19 2.4E-23 155.3 -2.3 185 77-278 351-550 (567)
121 4b8c_D Glucose-repressible alc 99.7 1.2E-17 4.1E-22 151.7 4.0 138 66-207 216-358 (727)
122 2je0_A Acidic leucine-rich nuc 99.7 2.3E-16 7.7E-21 115.3 10.0 128 140-270 16-149 (149)
123 2o6r_A Variable lymphocyte rec 99.6 1.8E-15 6.2E-20 113.8 12.4 129 119-251 9-138 (177)
124 2ell_A Acidic leucine-rich nuc 99.6 4.7E-16 1.6E-20 116.0 9.0 132 116-250 23-160 (168)
125 4b8c_D Glucose-repressible alc 99.6 2.5E-17 8.4E-22 149.7 1.5 183 77-271 175-369 (727)
126 3sb4_A Hypothetical leucine ri 99.6 5.1E-16 1.7E-20 128.5 9.0 244 19-268 48-328 (329)
127 1w8a_A SLIT protein; signaling 99.6 3.9E-15 1.3E-19 113.5 12.3 126 102-228 11-140 (192)
128 2wfh_A SLIT homolog 2 protein 99.6 5.6E-15 1.9E-19 112.7 12.7 126 120-250 13-139 (193)
129 2je0_A Acidic leucine-rich nuc 99.6 9E-16 3.1E-20 112.1 7.2 128 116-246 16-149 (149)
130 2wfh_A SLIT homolog 2 protein 99.6 2.2E-14 7.6E-19 109.3 12.7 123 103-227 14-139 (193)
131 2o6r_A Variable lymphocyte rec 99.6 2.5E-14 8.5E-19 107.6 12.7 129 144-276 10-139 (177)
132 1a9n_A U2A', U2A'; complex (nu 99.6 5.8E-15 2E-19 110.9 8.5 131 137-273 15-152 (176)
133 1ds9_A Outer arm dynein; leuci 99.6 2.6E-16 8.8E-21 120.7 -0.0 156 17-178 15-185 (198)
134 1ds9_A Outer arm dynein; leuci 99.5 1.6E-16 5.4E-21 121.9 -2.2 119 2-132 24-155 (198)
135 4fdw_A Leucine rich hypothetic 99.5 6E-13 2.1E-17 112.7 19.3 209 52-271 159-380 (401)
136 3sb4_A Hypothetical leucine ri 99.5 3.1E-14 1.1E-18 117.7 10.5 215 19-244 100-328 (329)
137 4fdw_A Leucine rich hypothetic 99.5 2E-12 6.8E-17 109.5 18.6 236 19-274 112-358 (401)
138 1a9n_A U2A', U2A'; complex (nu 99.5 3.8E-14 1.3E-18 106.4 7.2 127 118-250 20-153 (176)
139 3g39_A Variable lymphocyte rec 99.5 2.3E-13 7.9E-18 101.5 10.5 104 143-250 11-115 (170)
140 2r9u_A Variable lymphocyte rec 99.4 8.4E-13 2.9E-17 98.8 11.1 103 144-250 15-118 (174)
141 3g39_A Variable lymphocyte rec 99.4 2.9E-13 9.8E-18 101.0 8.4 102 1-112 14-115 (170)
142 2r9u_A Variable lymphocyte rec 99.4 5.2E-13 1.8E-17 99.9 8.4 102 1-112 17-118 (174)
143 3un9_A NLR family member X1; l 99.4 1.3E-14 4.6E-19 121.6 -2.7 168 20-204 72-253 (372)
144 3un9_A NLR family member X1; l 99.3 3E-14 1E-18 119.5 -4.0 152 76-228 73-253 (372)
145 2ifg_A High affinity nerve gro 99.2 1.7E-11 6E-16 101.9 7.8 102 2-113 14-117 (347)
146 4fs7_A Uncharacterized protein 99.2 9.9E-10 3.4E-14 92.9 18.0 191 70-271 158-376 (394)
147 2ifg_A High affinity nerve gro 99.2 1.2E-10 4.1E-15 96.8 9.8 103 145-250 12-116 (347)
148 4gt6_A Cell surface protein; l 99.1 1.7E-08 5.8E-13 85.3 18.7 109 159-272 259-368 (394)
149 4fs7_A Uncharacterized protein 98.9 2.8E-08 9.5E-13 84.0 15.5 141 116-266 252-393 (394)
150 2ra8_A Uncharacterized protein 98.9 2.7E-10 9.4E-15 94.8 1.7 177 43-225 132-341 (362)
151 2ra8_A Uncharacterized protein 98.9 2.1E-09 7.1E-14 89.5 5.8 177 68-248 133-341 (362)
152 1io0_A Tropomodulin; LRR prote 98.9 3.6E-10 1.2E-14 85.2 1.1 115 13-130 29-164 (185)
153 4h09_A Hypothetical leucine ri 98.8 5.2E-07 1.8E-11 75.7 19.0 127 138-269 214-341 (379)
154 4gt6_A Cell surface protein; l 98.8 5.1E-07 1.7E-11 76.2 18.8 133 133-273 257-390 (394)
155 1io0_A Tropomodulin; LRR prote 98.7 1.5E-09 5.1E-14 81.8 -0.5 114 160-274 31-164 (185)
156 3e4g_A ATP synthase subunit S, 98.6 1.3E-08 4.3E-13 75.2 2.9 93 12-110 53-150 (176)
157 3rw6_A Nuclear RNA export fact 98.6 2E-08 6.9E-13 79.6 2.5 62 48-112 168-233 (267)
158 4h09_A Hypothetical leucine ri 98.4 4.3E-05 1.5E-09 63.9 19.7 239 16-271 42-320 (379)
159 3e4g_A ATP synthase subunit S, 98.4 6.2E-08 2.1E-12 71.5 0.8 81 1-88 66-153 (176)
160 3rw6_A Nuclear RNA export fact 98.3 2.8E-07 9.6E-12 73.0 3.1 79 187-267 168-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 6.2E-06 2.1E-10 62.0 2.0 87 19-108 40-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 6.3E-06 2.2E-10 61.9 0.8 111 162-273 38-169 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0011 3.9E-08 46.3 4.6 56 54-112 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0028 9.4E-08 44.3 6.1 56 193-250 11-68 (130)
165 2lz0_A Uncharacterized protein 60.4 12 0.0004 24.2 4.0 46 7-59 7-52 (100)
166 2lz0_A Uncharacterized protein 56.2 19 0.00064 23.2 4.4 42 132-174 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-38 Score=291.04 Aligned_cols=269 Identities=33% Similarity=0.501 Sum_probs=222.6
Q ss_pred CCcccccceeccccccC--cccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccE
Q 038788 2 NTIRNIFSGKVSINFGG--LQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTG 79 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~--l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 79 (278)
|+++|+++|.+|..+.. +++|++|++++|++++ .++..+.++++|++|++++|.+++.+|..+..+.. |++
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~ 446 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG------KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRD 446 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCE
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCcccc------ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC-CCE
Confidence 44444444444444443 4445555555555544 23456788888999999999888888888888877 999
Q ss_pred EEeecCeeeecCCccccccCCcceecccccccchh------hhccccEEEeecccccccCCCCCCCcccccEEEcccCcc
Q 038788 80 IAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 80 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 153 (278)
|++++|++++..|..+..+++|+.|++++|++... .+++|++|++++|.+.+..|.+++.+++|++|++++|.+
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 99999988888888888899999999999887632 278899999999999888888899999999999999999
Q ss_pred cccCCcCccCCCCCcEEEeecCcCcccCCCCc------------------------------------------------
Q 038788 154 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQL------------------------------------------------ 185 (278)
Q Consensus 154 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------------------------------ 185 (278)
.+.+|..+..+++|+.|++++|.+++.+|..+
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 88889889999999999999988776655432
Q ss_pred ----------------------ccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEE
Q 038788 186 ----------------------PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYL 242 (278)
Q Consensus 186 ----------------------~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l 242 (278)
..++.+ +.+++++|.+++.+|..++.++.|+.|++++|.+++.+|..+. +++|+.|
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSM-MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCC-CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cccccccccccceecccCchhhhccccc-cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 334567 8899999999999999999999999999999999988887776 9999999
Q ss_pred EccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 243 CMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 243 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
++++|++++.+|..+.+++.|++|++++|+++|.||
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 999999999999999999999999999999999998
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-37 Score=280.96 Aligned_cols=270 Identities=31% Similarity=0.475 Sum_probs=230.3
Q ss_pred CCCcccccceeccccccCc-ccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCch-hhccccccc
Q 038788 1 MNTIRNIFSGKVSINFGGL-QNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFS-LANLSTTMT 78 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~L~ 78 (278)
|++++|.++|.+|..+.+. ++|++|++++|++++. ++..++++++|++|++++|.+++.+|.. +.++.. |+
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~------~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~-L~ 346 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA------VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG-LK 346 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC------CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTT-CC
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc------cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCC-CC
Confidence 4667777777777776654 7777777777777763 3355777888888888888887777766 666666 88
Q ss_pred EEEeecCeeeecCCccccccC-Ccceecccccccchhh--------hccccEEEeecccccccCCCCCCCcccccEEEcc
Q 038788 79 GIAIGNNQISCFIPDGIANLV-NLNALGVEFNQLAVTI--------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLE 149 (278)
Q Consensus 79 ~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~~--------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 149 (278)
+|++++|++++..|..+..++ +|+.|++++|.++... +++|++|++++|.+++..|..+..+++|++|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 888888888877888887777 8888888888775322 5679999999999988888889999999999999
Q ss_pred cCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeeccc
Q 038788 150 VNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSE 229 (278)
Q Consensus 150 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 229 (278)
+|.+.+..|..+..+++|+.|++++|.+++..|..+..+++| +.|++++|.+.+..|..+..+++|++|++++|++++.
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL-ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc-eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc
Confidence 999988888889999999999999999998899999999999 9999999999988999999999999999999999988
Q ss_pred CCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 230 ISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 230 ~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
.+..+. +++|++|++++|++.+.+|..++++++|++|++++|+++|.+|
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 777766 9999999999999999999999999999999999999999987
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.8e-36 Score=259.09 Aligned_cols=271 Identities=18% Similarity=0.190 Sum_probs=197.8
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.|++..|..|+++++|++|++++|.+.+..+ +..+.++++|++|++++|.+++..|..+.++.. |++|
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L 108 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-----NNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN-LEVL 108 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT-CCEE
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccceEC-----cccccccccCCEEeCCCCccCccChhhccCccc-CCEE
Confidence 5788899988888888888899999998888764321 134666777777777777776555666666655 7777
Q ss_pred EeecCeeeecCCcc--ccccCCcceecccccccchh-------hhccccEEEeecccccccCCCCCCCc-----------
Q 038788 81 AIGNNQISCFIPDG--IANLVNLNALGVEFNQLAVT-------ILKSLQMLFLHENILQGTIPCSLGNL----------- 140 (278)
Q Consensus 81 ~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~-------~~~~L~~l~l~~~~~~~~~~~~~~~~----------- 140 (278)
++++|++++..+.. +..+++|+.|++++|.+... .+++|++|++++|.+.+..+..+..+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 77777666433322 56666666666666655321 14556666666665554333322221
Q ss_pred --------------------------------------------------------------------------------
Q 038788 141 -------------------------------------------------------------------------------- 140 (278)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (278)
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence
Q ss_pred ------ccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCC
Q 038788 141 ------TMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLK 214 (278)
Q Consensus 141 ------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~ 214 (278)
++|+++++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++| +.|++++|.+++..+..+..++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL-LKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCCEECGGGGTTCT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC-CEEECCCCccCCcChhHhcCcc
Confidence 245555555555555556667888899999999999888888888888898 9999999999877788888899
Q ss_pred CCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 215 NLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 215 ~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
+|++|++++|.+++..+..+. +++|++|++++|++++..+..+..+++|++|++++|++++.+|
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999887776665 8999999999999986666667889999999999999988775
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=251.31 Aligned_cols=267 Identities=22% Similarity=0.151 Sum_probs=182.6
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|+|++..+..|.++++|++|++++|.+++..+ ..|.++++|++|++++|.++...+..|.++.. |++|
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L 109 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP------GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN-LTKL 109 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT-CCEE
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCEeCh------hhhhCCccCCEEECCCCcCCccCcccccCCCC-CCEE
Confidence 5788999998888889999999999999998887544 45777888888888888887433344566666 8888
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchh------hhccccEEEeecccccccCCCCCCCcccccEEEcccCccc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLL 154 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 154 (278)
++++|++++..+..+..+++|+.|++++|.+... .+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 8888888877777788888888888888876432 2677788888887777544445667777777777777776
Q ss_pred ccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCcc
Q 038788 155 GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTL 234 (278)
Q Consensus 155 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 234 (278)
+..+..+..+++|+.|++++|...+.+|.......+| +.|++++|.+++..+..+..+++|+.|++++|.+++..+..+
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 5555566777777777777766555555554444555 666666666663322455566666666666666665554444
Q ss_pred C-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccc
Q 038788 235 G-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSG 275 (278)
Q Consensus 235 ~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 275 (278)
. +++|+.|++++|++.+..+..+.++++|++|++++|++++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 3 5566666666666655555555566666666666665553
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=247.38 Aligned_cols=267 Identities=20% Similarity=0.188 Sum_probs=238.0
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.+++..|..|+++++|++|++++|+++..++ ..+.++++|++|++++|.++...+..+.++.. |++|
T Consensus 61 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L 133 (477)
T 2id5_A 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL------GVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSL 133 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT------TSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEE
T ss_pred EECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc------ccccCCCCCCEEECCCCccccCChhHcccccc-CCEE
Confidence 5899999999889999999999999999999997654 34788999999999999999777888888887 9999
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchh------hhccccEEEeecccccccCCCCCCCcccccEEEcccCccc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLL 154 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 154 (278)
++++|.+++..+..+..+++|+.|++++|.++.. .+++|+.|++++|.+.+..+..+..+++|++|++++|...
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 9999999988888999999999999999988642 2789999999999999877788999999999999999887
Q ss_pred ccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCcc
Q 038788 155 GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTL 234 (278)
Q Consensus 155 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 234 (278)
+.++.......+|+.|++++|.+++..+..+..+++| +.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL-RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCcccc-CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 7777777777799999999999985444567888999 999999999997777788899999999999999998877776
Q ss_pred C-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccc
Q 038788 235 G-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSG 275 (278)
Q Consensus 235 ~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 275 (278)
. +++|+.|++++|++++..+..+..+++|++|++++|+++.
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 6 9999999999999997666778999999999999999864
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-34 Score=239.11 Aligned_cols=248 Identities=26% Similarity=0.341 Sum_probs=209.2
Q ss_pred ccccEEecCCCCCCCccCCCccccccccCCCCccEEEeec-ccccccCCchhhcccccccEEEeecCeeeecCCcccccc
Q 038788 20 QNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDA-NRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANL 98 (278)
Q Consensus 20 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 98 (278)
.+++.|+++++.+++.. .++..+.++++|++|++++ |.+.+.+|..+.++.. |++|++++|.+++..|..+..+
T Consensus 50 ~~l~~L~L~~~~l~~~~----~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPY----PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCE----ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT-CSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCc----ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCC-CCEEECcCCeeCCcCCHHHhCC
Confidence 57899999999988611 1335688889999999995 8888888989988887 9999999999988888889999
Q ss_pred CCcceecccccccchh------hhccccEEEeecccccccCCCCCCCcc-cccEEEcccCcccccCCcCccCCCCCcEEE
Q 038788 99 VNLNALGVEFNQLAVT------ILKSLQMLFLHENILQGTIPCSLGNLT-MLTQRLLEVNDLLGNIPPSIGNCKNLILLT 171 (278)
Q Consensus 99 ~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 171 (278)
++|++|++++|.+... .+++|++|++++|.+++..|..+..++ .|++|++++|.+.+..|..+..++ |+.|+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 9999999999987632 278899999999998878888888887 899999999999888888888877 99999
Q ss_pred eecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeec
Q 038788 172 TRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFI 250 (278)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~ 250 (278)
+++|.+++..|..+..+++| +.|++++|.+++..+. +..+++|++|++++|.+++..+..+. +++|++|++++|+++
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNT-QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCC-SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CcCCcccCcCCHHHhcCCCC-CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 99999888888888888999 9999999998855444 67788999999999999877776665 899999999999999
Q ss_pred ccCCccccCCCCCcEEECCCCc-cccc
Q 038788 251 GSIPSTLSSLKSITELDLSCNN-LSGH 276 (278)
Q Consensus 251 ~~~~~~~~~~~~L~~L~l~~n~-l~~~ 276 (278)
+.+|.. .++++|+.+++++|+ ++|.
T Consensus 282 ~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 282 GEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred ccCCCC-ccccccChHHhcCCCCccCC
Confidence 888876 788899999999997 6653
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.9e-33 Score=248.90 Aligned_cols=268 Identities=23% Similarity=0.201 Sum_probs=219.7
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
|++++|.+++..+..|+.+++|++|++++|+++..+ ..+.++++|++|++++|.+++..|..+..++. |++|
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp-------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L 330 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-------SGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHL 330 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC-------SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-CSEE
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccCCCC-------hhhcccccCCEEECccCCcCcCchhhhhccCc-CCEE
Confidence 467889998877888999999999999999988543 44788899999999999988666777887877 9999
Q ss_pred EeecCeeeecCCc-cccccCCcceecccccccchh--------hhccccEEEeecccccccCCCCCCCcccccEEEcccC
Q 038788 81 AIGNNQISCFIPD-GIANLVNLNALGVEFNQLAVT--------ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVN 151 (278)
Q Consensus 81 ~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~--------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 151 (278)
++++|.+.+..+. .+..+++|+.|++++|.+... .+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 9999988755544 478899999999999887542 2788999999999888777888888899999999998
Q ss_pred cccccCCcC-ccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCccc---CchhhhcCCCCCEEEccCCeec
Q 038788 152 DLLGNIPPS-IGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH---FPAEVGKLKNLISLDISSNMFS 227 (278)
Q Consensus 152 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~---~~~~~~~~~~L~~L~L~~n~~~ 227 (278)
.+.+..+.. +..+++|+.|++++|.+++..|..+..+++| +.|++++|.+.+. .+..+..+++|++|++++|.++
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 887665543 7788899999999998887778888888888 8899999988752 2356778888999999999888
Q ss_pred ccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 228 SEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 228 ~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
+.++..+. +++|++|++++|++.+..+..+.+++.| +|++++|++++.+|
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 87766665 8889999999998888888888888888 88888888886654
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-33 Score=253.73 Aligned_cols=262 Identities=21% Similarity=0.249 Sum_probs=199.1
Q ss_pred CCCccccccee-----------------cccccc--CcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccc
Q 038788 1 MNTIRNIFSGK-----------------VSINFG--GLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANR 61 (278)
Q Consensus 1 L~l~~n~~~~~-----------------~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 61 (278)
||+++|.++|. +|..++ ++++|++|++++|++.+. ++..+.++++|++|++++|.
T Consensus 211 L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 211 FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK------LPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS------CCTTTTTCSSCCEEECTTCT
T ss_pred EECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc------ChHHHhcCCCCCEEECcCCC
Confidence 57889999986 899988 999999999999998874 44668888999999999998
Q ss_pred -ccc-cCCchhhcc------cccccEEEeecCeeeecCCc--cccccCCcceecccccccchh-----hhccccEEEeec
Q 038788 62 -FGG-ALPFSLANL------STTMTGIAIGNNQISCFIPD--GIANLVNLNALGVEFNQLAVT-----ILKSLQMLFLHE 126 (278)
Q Consensus 62 -l~~-~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~-----~~~~L~~l~l~~ 126 (278)
+++ .+|..++.+ .. |++|++++|+++ .+|. .+..+++|+.|++++|.+.+. .+++|++|++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~-L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEK-IQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGT-CCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCC-CCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC
Confidence 887 788888776 55 999999999888 6777 788899999999998887622 267888888888
Q ss_pred ccccccCCCCCCCccc-ccEEEcccCcccccCCcCccCCC--CCcEEEeecCcCcccCCCCcc-------cccccceeEE
Q 038788 127 NILQGTIPCSLGNLTM-LTQRLLEVNDLLGNIPPSIGNCK--NLILLTTRKNKPSGTMPRQLP-------RIITLSVLLN 196 (278)
Q Consensus 127 ~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~~L~ 196 (278)
|.++ .+|..+..+++ |++|++++|.+. .+|..+...+ +|+.|++++|.+++..|..+. .++++ +.|+
T Consensus 363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L-~~L~ 439 (636)
T 4eco_A 363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV-SSIN 439 (636)
T ss_dssp SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE-EEEE
T ss_pred Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC-CEEE
Confidence 8888 67777888888 888888888887 6776665544 788888888888877777776 66677 7888
Q ss_pred ccCCcCcccCch-hhhcCCCCCEEEccCCeecccCCCccC-CC-------CccEEEccCCeecccCCcccc--CCCCCcE
Q 038788 197 LSDNLLSGHFPA-EVGKLKNLISLDISSNMFSSEISTTLG-CT-------SLEYLCMQDNSFIGSIPSTLS--SLKSITE 265 (278)
Q Consensus 197 l~~n~~~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~-------~L~~l~l~~n~~~~~~~~~~~--~~~~L~~ 265 (278)
+++|.++ .+|. .+..+++|++|++++|.++..+...+. .. +|+.|++++|++. .+|..+. .+++|++
T Consensus 440 Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 440 LSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVG 517 (636)
T ss_dssp CCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCE
T ss_pred CcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCE
Confidence 8888877 4443 344567777777777777644444333 22 6677777777666 5555554 6666777
Q ss_pred EECCCCcccc
Q 038788 266 LDLSCNNLSG 275 (278)
Q Consensus 266 L~l~~n~l~~ 275 (278)
|++++|++++
T Consensus 518 L~Ls~N~l~~ 527 (636)
T 4eco_A 518 IDLSYNSFSK 527 (636)
T ss_dssp EECCSSCCSS
T ss_pred EECCCCCCCC
Confidence 7777666665
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-33 Score=253.34 Aligned_cols=268 Identities=20% Similarity=0.226 Sum_probs=206.8
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCC------CCc---------------------------c-----------
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNL------GTW---------------------------T----------- 36 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~------~~~---------------------------~----------- 36 (278)
|||++|.+.|.+|++++++++|++|++++|.+ .+. .
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l 165 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence 58999999999999999999999999999965 110 0
Q ss_pred ---------------------------CCCccccccccCCCCccEEEeeccccccc-----------------CCchhh-
Q 038788 37 ---------------------------TNDLHFITFLTNCTKLGVLVLDANRFGGA-----------------LPFSLA- 71 (278)
Q Consensus 37 ---------------------------~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-----------------~~~~~~- 71 (278)
...-.++..++++++|++|++++|.+++. +|..++
T Consensus 166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~ 245 (636)
T 4eco_A 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245 (636)
T ss_dssp HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence 00012567789999999999999999975 899988
Q ss_pred -cccccccEEEeecCeeeecCCccccccCCcceecccccc-cch-hh------h------ccccEEEeecccccccCCC-
Q 038788 72 -NLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQ-LAV-TI------L------KSLQMLFLHENILQGTIPC- 135 (278)
Q Consensus 72 -~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~-~~------~------~~L~~l~l~~~~~~~~~~~- 135 (278)
++.. |++|++++|.+.+..|..+..+++|+.|++++|+ +++ .. + ++|++|++++|.++ .+|.
T Consensus 246 ~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~ 323 (636)
T 4eco_A 246 DNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE 323 (636)
T ss_dssp GGCTT-CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH
T ss_pred cccCC-CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch
Confidence 8888 9999999999998999999999999999999998 775 22 3 89999999999998 7887
Q ss_pred -CCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccc-cceeEEccCCcCcccCchhhhcC
Q 038788 136 -SLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIIT-LSVLLNLSDNLLSGHFPAEVGKL 213 (278)
Q Consensus 136 -~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~~L~l~~n~~~~~~~~~~~~~ 213 (278)
.++.+++|++|++++|.+.+.+| .+..+++|+.|++++|.++ .+|..+..+++ | +.|++++|.++ .+|..+...
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L-~~L~Ls~N~l~-~lp~~~~~~ 399 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQV-ENLSFAHNKLK-YIPNIFDAK 399 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTC-CEEECCSSCCS-SCCSCCCTT
T ss_pred hhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccC-cEEEccCCcCc-ccchhhhhc
Confidence 88899999999999999887787 7777888888888888777 67777777777 7 77888888777 566655544
Q ss_pred C--CCCEEEccCCeecccCCCcc--------CCCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 214 K--NLISLDISSNMFSSEISTTL--------GCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 214 ~--~L~~L~L~~n~~~~~~~~~~--------~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
+ +|+.|++++|.+.+..+..+ .+++|+.|++++|++....+..+..+++|++|++++|+++
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 3 67777777777765443322 2456667777776666322223345666666666666666
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1e-32 Score=227.29 Aligned_cols=226 Identities=29% Similarity=0.429 Sum_probs=209.5
Q ss_pred CCccEEEeecccccc--cCCchhhcccccccEEEeec-CeeeecCCccccccCCcceecccccccch------hhhcccc
Q 038788 50 TKLGVLVLDANRFGG--ALPFSLANLSTTMTGIAIGN-NQISCFIPDGIANLVNLNALGVEFNQLAV------TILKSLQ 120 (278)
Q Consensus 50 ~~L~~L~l~~~~l~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~l~~------~~~~~L~ 120 (278)
.++++|++++|.+++ .+|..+.++.. |++|++++ |.+.+..|..+..+++|++|++++|.++. ..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 589999999999998 89999999888 99999995 89998899999999999999999999862 2278999
Q ss_pred EEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCC-CCcEEEeecCcCcccCCCCcccccccceeEEccC
Q 038788 121 MLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCK-NLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSD 199 (278)
Q Consensus 121 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~ 199 (278)
+|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..++ .|+.|++++|.+++..|..+..+. | +.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-AFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C-SEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c-cEEECcC
Confidence 999999999988899999999999999999999988999999988 999999999999988999888887 7 9999999
Q ss_pred CcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 200 NLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 200 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
|.+.+..+..+..+++|+.|++++|.+++.++....+++|++|++++|++.+.+|..+..+++|++|++++|+++|.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 9999888999999999999999999999877765558999999999999999999999999999999999999999987
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.5e-32 Score=236.28 Aligned_cols=261 Identities=21% Similarity=0.227 Sum_probs=204.5
Q ss_pred cccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccC-CchhhcccccccEEEe
Q 038788 4 IRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGAL-PFSLANLSTTMTGIAI 82 (278)
Q Consensus 4 ~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l 82 (278)
+++.++ .+|. + .++|++|++++|++++..+ ..+.++++|++|++++|.+.+.+ +..|.++.. |++|++
T Consensus 18 ~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~------~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~-L~~L~L 86 (455)
T 3v47_A 18 INRGLH-QVPE-L--PAHVNYVDLSLNSIAELNE------TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS-LIILKL 86 (455)
T ss_dssp CSSCCS-SCCC-C--CTTCCEEECCSSCCCEECT------TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTT-CCEEEC
T ss_pred CCCCcc-cCCC-C--CCccCEEEecCCccCcCCh------hHhccCccccEEECcCCcccceECccccccccc-CCEEeC
Confidence 344444 3454 2 2689999999999998644 55889999999999999987555 566777777 999999
Q ss_pred ecCeeeecCCccccccCCcceecccccccchh--------hhccccEEEeecccccccCCCC-CCCcccccEEEcccCcc
Q 038788 83 GNNQISCFIPDGIANLVNLNALGVEFNQLAVT--------ILKSLQMLFLHENILQGTIPCS-LGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 83 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--------~~~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~ 153 (278)
++|++++..|..+..+++|++|++++|.++.. .+++|++|++++|.+.+..+.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 99999988899999999999999999999742 1789999999999999766665 78899999999999988
Q ss_pred cccCCcCccCC----------------------------------CCCcEEEe---------------------------
Q 038788 154 LGNIPPSIGNC----------------------------------KNLILLTT--------------------------- 172 (278)
Q Consensus 154 ~~~~~~~~~~~----------------------------------~~L~~L~l--------------------------- 172 (278)
.+..+..+..+ ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 76555433322 34444444
Q ss_pred ------------------------------------ecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCC
Q 038788 173 ------------------------------------RKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNL 216 (278)
Q Consensus 173 ------------------------------------~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L 216 (278)
++|.+++..|..+..+++| +.|++++|.+.+..+..+..+++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL-EQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC-CEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC-CEEECCCCcccccChhHhcCcccC
Confidence 4444444456667777788 888888888887667777888888
Q ss_pred CEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccccc
Q 038788 217 ISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGH 276 (278)
Q Consensus 217 ~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 276 (278)
++|++++|.+++..+..+. +++|++|++++|++.+..+..+.++++|++|++++|++++.
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 8888888888777666655 88888888888888877777888888888888888888753
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-32 Score=246.23 Aligned_cols=266 Identities=21% Similarity=0.176 Sum_probs=233.9
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCch-hhcccccccE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFS-LANLSTTMTG 79 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~L~~ 79 (278)
||+++|.++ .+|..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.+|.. +..+.. |++
T Consensus 283 L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~ 354 (606)
T 3t6q_A 283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ------ISASNFPSLTHLSIKGNTKRLELGTGCLENLEN-LRE 354 (606)
T ss_dssp EECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG------GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT-CCE
T ss_pred EeccCCccC-CCChhhcccccCCEEECccCCcCcCch------hhhhccCcCCEEECCCCCcccccchhhhhccCc-CCE
Confidence 589999999 689999999999999999999997543 55788999999999999988766655 666766 999
Q ss_pred EEeecCeeeecC--CccccccCCcceecccccccchh------hhccccEEEeecccccccCCC-CCCCcccccEEEccc
Q 038788 80 IAIGNNQISCFI--PDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENILQGTIPC-SLGNLTMLTQRLLEV 150 (278)
Q Consensus 80 L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~ 150 (278)
|++++|.+++.. +..+..+++|+.|++++|.+... .+++|++|++++|.+.+..+. .+..+++|++|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 999999998765 77899999999999999987533 278999999999999866544 488899999999999
Q ss_pred CcccccCCcCccCCCCCcEEEeecCcCccc---CCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeec
Q 038788 151 NDLLGNIPPSIGNCKNLILLTTRKNKPSGT---MPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFS 227 (278)
Q Consensus 151 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 227 (278)
|.+.+..+..+..+++|++|++++|.+++. .+..+..+++| +.|++++|.+.+..+..+..+++|++|++++|+++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL-EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc-cEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 999877788899999999999999998763 33568889999 99999999999888889999999999999999999
Q ss_pred ccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccccc
Q 038788 228 SEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGH 276 (278)
Q Consensus 228 ~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 276 (278)
+.++..+. +++| .+++++|++++..+..+..+++|+++++++|++++.
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 88877776 8999 999999999988888889999999999999998764
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=241.17 Aligned_cols=262 Identities=19% Similarity=0.215 Sum_probs=163.5
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.+++..|..|+++++|++|++++|++++..+ ..+.++++|++|++++|.++ .+|.. .+.. |++|
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~-L~~L 95 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI------SVFKFNQELEYLDLSHNKLV-KISCH--PTVN-LKHL 95 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG------GGGTTCTTCCEEECCSSCCC-EEECC--CCCC-CSEE
T ss_pred EECCCCcccccChhhccccccccEEecCCCccCCcCh------HHhhcccCCCEEecCCCcee-ecCcc--ccCC-ccEE
Confidence 4677777777666777777778888888777776433 45677777777777777776 55554 4444 7777
Q ss_pred EeecCeeee-cCCccccccCCcceecccccccchhh---hccc--cEEEeecccc--cccCCCCCCCcc-----------
Q 038788 81 AIGNNQISC-FIPDGIANLVNLNALGVEFNQLAVTI---LKSL--QMLFLHENIL--QGTIPCSLGNLT----------- 141 (278)
Q Consensus 81 ~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~l~~~~---~~~L--~~l~l~~~~~--~~~~~~~~~~~~----------- 141 (278)
++++|++++ ..|..+..+++|++|++++|.+.... +++| +++++++|.+ .+..+..+..+.
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n 175 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSS
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccC
Confidence 777777765 35667777777777777777765422 4445 6666666555 222222222211
Q ss_pred ------------------------------------------------------------------------cccEEEcc
Q 038788 142 ------------------------------------------------------------------------MLTQRLLE 149 (278)
Q Consensus 142 ------------------------------------------------------------------------~L~~L~l~ 149 (278)
+|++|+++
T Consensus 176 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 255 (520)
T 2z7x_B 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255 (520)
T ss_dssp SCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEE
T ss_pred cchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEee
Confidence 34444444
Q ss_pred cCcccccCCcCc-----------------------------------------------------cCCCCCcEEEeecCc
Q 038788 150 VNDLLGNIPPSI-----------------------------------------------------GNCKNLILLTTRKNK 176 (278)
Q Consensus 150 ~n~~~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~~~ 176 (278)
+|.+.+.+|..+ ..+++|++|++++|.
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred cccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc
Confidence 444443333322 456677777777777
Q ss_pred CcccCCCCcccccccceeEEccCCcCcc--cCchhhhcCCCCCEEEccCCeecc-cCCCccC-C----------------
Q 038788 177 PSGTMPRQLPRIITLSVLLNLSDNLLSG--HFPAEVGKLKNLISLDISSNMFSS-EISTTLG-C---------------- 236 (278)
Q Consensus 177 ~~~~~~~~~~~~~~L~~~L~l~~n~~~~--~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~-~---------------- 236 (278)
+++..|..+..+++| +.|++++|.+.+ .+|..+..+++|++|++++|.+++ .+...+. +
T Consensus 336 l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 336 LTDTVFENCGHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCTTTTTTCCCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred cChhhhhhhccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 776677777777777 777777777774 344566677777777777777765 3322222 3
Q ss_pred ------CCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 237 ------TSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 237 ------~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
++|+.|++++|++. .+|..+..+++|++|++++|+++
T Consensus 415 ~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 415 IFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp GGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 35555555555555 45555556677777777777766
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-32 Score=252.74 Aligned_cols=266 Identities=20% Similarity=0.217 Sum_probs=217.4
Q ss_pred CCCcccccceeccccccCcccccEEec-CCCCCCCccCCC----------------------------------------
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNL-GKNNLGTWTTND---------------------------------------- 39 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l-~~~~~~~~~~~~---------------------------------------- 39 (278)
|||++|.+.|.+|++++++++|++|++ ++|.++|..+-.
T Consensus 328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 689999999999999999999999999 777654431100
Q ss_pred ------------------------------ccccccccCCCCccEEEeecccccc-----------------cCCchhh-
Q 038788 40 ------------------------------LHFITFLTNCTKLGVLVLDANRFGG-----------------ALPFSLA- 71 (278)
Q Consensus 40 ------------------------------~~~~~~l~~~~~L~~L~l~~~~l~~-----------------~~~~~~~- 71 (278)
-.+|..+.++++|++|++++|.+++ .+|..++
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence 0167789999999999999999997 3898887
Q ss_pred -cccccccEEEeecCeeeecCCccccccCCcceecccccc-cch-hh------hc-------cccEEEeecccccccCCC
Q 038788 72 -NLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQ-LAV-TI------LK-------SLQMLFLHENILQGTIPC 135 (278)
Q Consensus 72 -~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~-~~------~~-------~L~~l~l~~~~~~~~~~~ 135 (278)
++.. |++|++++|.+.+..|..+..+++|+.|++++|+ +++ .. ++ +|++|++++|.++ .+|.
T Consensus 488 ~~L~~-L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 488 SNLKD-LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp GGCTT-CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred ccCCC-CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 8888 9999999999998999999999999999999998 775 22 44 8999999999999 7888
Q ss_pred --CCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccc-cceeEEccCCcCcccCchhhhc
Q 038788 136 --SLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIIT-LSVLLNLSDNLLSGHFPAEVGK 212 (278)
Q Consensus 136 --~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~~L~l~~n~~~~~~~~~~~~ 212 (278)
.++.+++|++|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+++ | +.|++++|.+. .+|..+..
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L-~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV-EGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC-CEEECCSSCCC-SCCSCCCT
T ss_pred hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccC-CEEECcCCCCC-cCchhhhc
Confidence 8999999999999999998 777 8899999999999999998 78888999988 8 99999999988 67766655
Q ss_pred CCC--CCEEEccCCeecccCCCcc------CCCCccEEEccCCeecccCCccc-cCCCCCcEEECCCCccc
Q 038788 213 LKN--LISLDISSNMFSSEISTTL------GCTSLEYLCMQDNSFIGSIPSTL-SSLKSITELDLSCNNLS 274 (278)
Q Consensus 213 ~~~--L~~L~L~~n~~~~~~~~~~------~~~~L~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~ 274 (278)
.+. |+.|++++|.+.+.++... .+++|+.|++++|.+. .+|..+ ..+++|++|++++|+++
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 543 8888888888876544332 1446777777777776 444443 46677777777777766
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-32 Score=243.56 Aligned_cols=156 Identities=19% Similarity=0.148 Sum_probs=99.6
Q ss_pred ccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCC-cCccCCCCCcEEEeecCcCcccCCCCcccccccceeE
Q 038788 117 KSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL 195 (278)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L 195 (278)
++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+++..|..+..+++| +.|
T Consensus 376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL-NTL 453 (606)
T ss_dssp SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEE
T ss_pred CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC-CEE
Confidence 344444444444432 33455556666666666666654444 456666777777777777666666666666676 777
Q ss_pred EccCCcCcc-cCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcc
Q 038788 196 NLSDNLLSG-HFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNL 273 (278)
Q Consensus 196 ~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 273 (278)
++++|.+.+ ..+..+..+++|++|++++|.+++.++..+. +++|++|++++|++.+..|..+.++++|++|++++|++
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 777777664 2455666667777777777777666555444 67777777777777666666677777777777777776
Q ss_pred c
Q 038788 274 S 274 (278)
Q Consensus 274 ~ 274 (278)
+
T Consensus 534 ~ 534 (606)
T 3vq2_A 534 E 534 (606)
T ss_dssp C
T ss_pred c
Confidence 6
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.2e-31 Score=222.74 Aligned_cols=257 Identities=21% Similarity=0.193 Sum_probs=189.1
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|+|++..+..|+++++|++|++++|++++..+ ..+.++++|++|++++|.++ .+|..+. ++|++|
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L 126 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP------GAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQEL 126 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT------TTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEE
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH------HHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEE
Confidence 5778888887666678888888888888888876533 44677788888888888877 5665554 348888
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchh--------hhccccEEEeecccccccCCCCCCCcccccEEEcccCc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT--------ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVND 152 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 152 (278)
++++|++++..+..+..+++|+.|++++|.+... .+++|++|++++|.++. ++..+. ++|++|++++|.
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCc
Confidence 8888888766666677888888888888877531 16778888888888773 444433 778888888888
Q ss_pred ccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCC
Q 038788 153 LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEIST 232 (278)
Q Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 232 (278)
+.+..+..+..+++|+.|++++|.+++..+..+..+++| +.|++++|.++ .+|..+..+++|++|++++|.+++.++.
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL-RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC-CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence 876666777888888888888888877667677778888 88888888888 6777777888888888888888776554
Q ss_pred ccC-------CCCccEEEccCCeecc--cCCccccCCCCCcEEECCCCc
Q 038788 233 TLG-------CTSLEYLCMQDNSFIG--SIPSTLSSLKSITELDLSCNN 272 (278)
Q Consensus 233 ~~~-------~~~L~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~ 272 (278)
.+. .++++.+++++|.+.. ..+..+..++.++.+++++|+
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 442 3677788888887653 345567777888888888874
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.6e-32 Score=239.14 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=85.2
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.|++..|..|+++++|++|++++|++++..+ ..+.++++|++|++++|.++ .+|.. .+.. |++|
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~-L~~L 126 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF------HVFLFNQDLEYLDVSHNRLQ-NISCC--PMAS-LRHL 126 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT------TTTTTCTTCCEEECTTSCCC-EECSC--CCTT-CSEE
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCCcCCH------HHhCCCCCCCEEECCCCcCC-ccCcc--cccc-CCEE
Confidence 5788888888777788888888888888888887544 44677788888888888877 56655 4545 8888
Q ss_pred EeecCeeeec-CCccccccCCcceecccccccchhh---hccc--cEEEeecccc
Q 038788 81 AIGNNQISCF-IPDGIANLVNLNALGVEFNQLAVTI---LKSL--QMLFLHENIL 129 (278)
Q Consensus 81 ~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l~~~~---~~~L--~~l~l~~~~~ 129 (278)
++++|++++. .|..+..+++|++|++++|.+.... +++| +++++++|.+
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 8888877753 3567777888888888777765322 3344 5666665555
No 18
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=9.1e-32 Score=223.58 Aligned_cols=257 Identities=21% Similarity=0.203 Sum_probs=207.4
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.+++..|..|+++++|++|++++|++++..+ ..+.++++|++|++++|.++ .+|..+. ++|++|
T Consensus 59 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L 128 (332)
T 2ft3_A 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE------KAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVEL 128 (332)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG------GGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEE
T ss_pred EECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH------hHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEE
Confidence 5788999988778889999999999999998887533 55788899999999999888 6776655 449999
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchhh-------hccccEEEeecccccccCCCCCCCcccccEEEcccCcc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI-------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 153 (278)
++++|+++...+..+..+++|+.|++++|.+.... ..+|+++++++|.+++ ++..+. ++|++|++++|.+
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcC
Confidence 99999988766667888999999999999886422 1278899999998884 454443 7889999999998
Q ss_pred cccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCc
Q 038788 154 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTT 233 (278)
Q Consensus 154 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 233 (278)
.+..+..+..+++|+.|++++|.+++..+..+..+++| +.|++++|.++ .+|..+..+++|++|++++|.+++.++..
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL-RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC-CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC-CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 87666788889999999999999987777788888999 99999999998 78888888999999999999998766554
Q ss_pred cC-------CCCccEEEccCCeec--ccCCccccCCCCCcEEECCCCc
Q 038788 234 LG-------CTSLEYLCMQDNSFI--GSIPSTLSSLKSITELDLSCNN 272 (278)
Q Consensus 234 ~~-------~~~L~~l~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~ 272 (278)
+. .++|+.+++++|++. +..+..+..++.|+.+++++|+
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 42 367889999999876 4566778889999999999885
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.4e-32 Score=242.15 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=85.4
Q ss_pred cCccCCCCCcEEEeecCcCcccCC-CCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecc-cCCCccC-
Q 038788 159 PSIGNCKNLILLTTRKNKPSGTMP-RQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSS-EISTTLG- 235 (278)
Q Consensus 159 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~- 235 (278)
..+..+++|+.|++++|.+.+..| ..+..+++| +.|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+.
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 345555666666666666655544 456667777 777777777776667777777888888888888776 3455444
Q ss_pred CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 236 CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 236 ~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
+++|++|++++|++.+..+..+.++++|++|++++|++++.+|
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 7888888888888887777778888888888888888876543
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=3.9e-31 Score=239.61 Aligned_cols=275 Identities=19% Similarity=0.191 Sum_probs=186.9
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCcc-----------------------ccc----cccCCCCcc
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLH-----------------------FIT----FLTNCTKLG 53 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-----------------------~~~----~l~~~~~L~ 53 (278)
||+++|.+++..|..|+.+++|++|++++|++++..+..+. ++. .+..+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 46777888777777788888888888888877765443221 111 455677777
Q ss_pred EEEeecccccccCCchhhcccccccEEEe----------------------------ecCeeeecCCccccccCCcceec
Q 038788 54 VLVLDANRFGGALPFSLANLSTTMTGIAI----------------------------GNNQISCFIPDGIANLVNLNALG 105 (278)
Q Consensus 54 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l----------------------------~~~~~~~~~~~~l~~l~~L~~L~ 105 (278)
+|++++|.+++..+..+..+.. |++|++ ++|++++..|..+..+++|+.|+
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCCccCCCChhHhccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 7777777777555555555443 444444 44455555566667777777777
Q ss_pred ccccccch-------hhhccccEEEeecccccccCCCCCCCcccccEEEcccCccc--ccCCcCccCCCCCcEEEeecCc
Q 038788 106 VEFNQLAV-------TILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLL--GNIPPSIGNCKNLILLTTRKNK 176 (278)
Q Consensus 106 l~~~~l~~-------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~~~ 176 (278)
+++|.+.. ..+++|+++++++|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|.
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 77777642 12667777777777776666666666777777777777664 3456667777888888888888
Q ss_pred CcccCCCCcccccccceeEEccCCcCcccC--------chhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCC
Q 038788 177 PSGTMPRQLPRIITLSVLLNLSDNLLSGHF--------PAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDN 247 (278)
Q Consensus 177 ~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~--------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n 247 (278)
+++..+..+..+++| +.|++++|.+++.. ...+..+++|++|++++|.++..++..+. +++|+.|++++|
T Consensus 492 l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 492 IANINDDMLEGLEKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp CCCCCTTTTTTCTTC-CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCChhhhcccccc-CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC
Confidence 776666667777777 78888888776321 12356677888888888877766555554 778888888888
Q ss_pred eecccCCccccCCCCCcEEECCCCcccccC
Q 038788 248 SFIGSIPSTLSSLKSITELDLSCNNLSGHI 277 (278)
Q Consensus 248 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 277 (278)
++++..+..+.++++|++|++++|++++..
T Consensus 571 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 877555555677788888888888877643
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=1e-31 Score=246.19 Aligned_cols=263 Identities=20% Similarity=0.202 Sum_probs=201.5
Q ss_pred CCCcccccce-----------------ecccccc--CcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccc
Q 038788 1 MNTIRNIFSG-----------------KVSINFG--GLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANR 61 (278)
Q Consensus 1 L~l~~n~~~~-----------------~~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 61 (278)
||+++|+|+| .+|..++ ++++|++|++++|++.+. ++..+.++++|++|++++|.
T Consensus 453 L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~------iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ------LPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS------CCGGGGGCSSCCEEECTTCT
T ss_pred EECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc------ChHHHhCCCCCCEEECcCCC
Confidence 5788999998 4899987 999999999999998874 44678899999999999998
Q ss_pred -ccc-cCCchhhccc------ccccEEEeecCeeeecCCc--cccccCCcceecccccccchh----hhccccEEEeecc
Q 038788 62 -FGG-ALPFSLANLS------TTMTGIAIGNNQISCFIPD--GIANLVNLNALGVEFNQLAVT----ILKSLQMLFLHEN 127 (278)
Q Consensus 62 -l~~-~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~----~~~~L~~l~l~~~ 127 (278)
+++ .+|..++.+. ++|++|++++|+++ .+|. .+..+++|+.|++++|.++.. .+++|+.|++++|
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC
Confidence 887 7888887776 23999999999998 6777 889999999999999988632 2788999999999
Q ss_pred cccccCCCCCCCccc-ccEEEcccCcccccCCcCccCCCC--CcEEEeecCcCcccCCCCc---c--cccccceeEEccC
Q 038788 128 ILQGTIPCSLGNLTM-LTQRLLEVNDLLGNIPPSIGNCKN--LILLTTRKNKPSGTMPRQL---P--RIITLSVLLNLSD 199 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~---~--~~~~L~~~L~l~~ 199 (278)
.+. .+|..+..+++ |++|++++|.+. .+|..+...+. |+.|++++|.+.+.+|... . ..++| +.|++++
T Consensus 606 ~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L-~~L~Ls~ 682 (876)
T 4ecn_A 606 QIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA-STVTLSY 682 (876)
T ss_dssp CCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE-EEEECCS
T ss_pred ccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc-CEEEccC
Confidence 998 78888888888 999999999987 67777666544 8888998888876554322 1 23466 7778888
Q ss_pred CcCcccCchhh-hcCCCCCEEEccCCeecccCCCccC-C-------CCccEEEccCCeecccCCcccc--CCCCCcEEEC
Q 038788 200 NLLSGHFPAEV-GKLKNLISLDISSNMFSSEISTTLG-C-------TSLEYLCMQDNSFIGSIPSTLS--SLKSITELDL 268 (278)
Q Consensus 200 n~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~-~-------~~L~~l~l~~n~~~~~~~~~~~--~~~~L~~L~l 268 (278)
|.+. .+|..+ ..+++|+.|++++|.++..+...+. . ++|+.|++++|++. .+|..+. .+++|+.|++
T Consensus 683 N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 683 NEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDV 760 (876)
T ss_dssp SCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEEC
T ss_pred CcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEe
Confidence 8877 455543 3667777777777777654444433 1 26777777777766 5666665 6677777777
Q ss_pred CCCcccc
Q 038788 269 SCNNLSG 275 (278)
Q Consensus 269 ~~n~l~~ 275 (278)
++|++++
T Consensus 761 s~N~L~~ 767 (876)
T 4ecn_A 761 SYNCFSS 767 (876)
T ss_dssp CSSCCSS
T ss_pred CCCCCCc
Confidence 7777765
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=7e-32 Score=249.57 Aligned_cols=268 Identities=19% Similarity=0.144 Sum_probs=184.2
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.|++..|..|+++++|++|++++|...+..+ +..+.++++|++|++++|.+.+..|..|.++.. |++|
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-----~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L 102 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID-----KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH-LFEL 102 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC-----TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS-CCCE
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccC-----HHHhcCCCCCCEEECCCCcCcccCHhHccCCcc-cCEe
Confidence 5788888888778888888888888888775443211 244666667777777777666555666666655 6666
Q ss_pred EeecCeeeecCCcc--ccccCCcceecccccccchh-------hhccccEEEeecccccccC------------------
Q 038788 81 AIGNNQISCFIPDG--IANLVNLNALGVEFNQLAVT-------ILKSLQMLFLHENILQGTI------------------ 133 (278)
Q Consensus 81 ~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~-------~~~~L~~l~l~~~~~~~~~------------------ 133 (278)
++++|.+++..+.. +..+++|++|++++|.+... .+++|++|++++|.+.+..
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 66666666544433 56666666666666655321 1555666666666554333
Q ss_pred --------CCCCCCccc------ccEEEcccCcccccCCcCcc------------------------------------C
Q 038788 134 --------PCSLGNLTM------LTQRLLEVNDLLGNIPPSIG------------------------------------N 163 (278)
Q Consensus 134 --------~~~~~~~~~------L~~L~l~~n~~~~~~~~~~~------------------------------------~ 163 (278)
+..+..++. |++|++++|.+.+..+..+. .
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 333333332 67777777655433322211 1
Q ss_pred --CCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCcc
Q 038788 164 --CKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLE 240 (278)
Q Consensus 164 --~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~ 240 (278)
.++|+.|++++|.+.+..+..+..+++| +.|++++|.+.+..+..+..+++|++|++++|.+++..+..+. +++|+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDL-KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCC-CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCC-CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 2567888888888877777778888888 8888888888877777888888899999999888877666555 88899
Q ss_pred EEEccCCeecccCCccccCCCCCcEEECCCCcccc
Q 038788 241 YLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSG 275 (278)
Q Consensus 241 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 275 (278)
.|++++|.+....+..+.++++|++|++++|.+++
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 99999988886666678888999999999988874
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=2.6e-31 Score=225.63 Aligned_cols=259 Identities=23% Similarity=0.241 Sum_probs=141.6
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCch-hhcccccccE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFS-LANLSTTMTG 79 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~L~~ 79 (278)
||+++|.+++..+..|+.+++|++|++++|.+++.++ ..+.++++|++|++++|.++ .+|.. +..+.. |++
T Consensus 74 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~-L~~ 145 (390)
T 3o6n_A 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP------HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK-LTT 145 (390)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCE
T ss_pred EECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH------HHhcCCCCCCEEECCCCccC-cCCHHHhcCCCC-CcE
Confidence 4566666666555666677777777777776666433 33566677777777777776 44444 344545 777
Q ss_pred EEeecCeeeecCCccccccCCcceecccccccchh---hhccccEEEeeccccccc-CCCCC---------------CCc
Q 038788 80 IAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT---ILKSLQMLFLHENILQGT-IPCSL---------------GNL 140 (278)
Q Consensus 80 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~---~~~~L~~l~l~~~~~~~~-~~~~~---------------~~~ 140 (278)
|++++|.+++..+..+..+++|+.|++++|.++.. .+++|+++++++|.+... .+..+ ...
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~ 225 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence 77777777666666667777777777777766432 245555555555544321 00000 012
Q ss_pred ccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEE
Q 038788 141 TMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLD 220 (278)
Q Consensus 141 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 220 (278)
++|++|++++|.+.+. ..+..+++|+.|++++|.+++..|..+..+++| +.|++++|.++ .++..+..+++|++|+
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-ERLYISNNRLV-ALNLYGQPIPTLKVLD 301 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-CEEECCSSCCC-EEECSSSCCTTCCEEE
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-CEEECCCCcCc-ccCcccCCCCCCCEEE
Confidence 3444555555544321 344455555555555555555445555555555 55555555555 2333334455555555
Q ss_pred ccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 221 ISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 221 L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
+++|.+++.++....+++|+.|++++|++.+. + +..+++|++|++++|+++
T Consensus 302 L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 302 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred CCCCcceecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 55555554333322255555555555555422 1 445555666666665554
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-31 Score=236.88 Aligned_cols=259 Identities=22% Similarity=0.236 Sum_probs=150.1
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCch-hhcccccccE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFS-LANLSTTMTG 79 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~L~~ 79 (278)
||+++|.|++..|..|+.+++|++|++++|.+++.++ ..++++++|++|++++|.++ .+|.. |..+.. |++
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~-L~~ 151 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP------HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK-LTT 151 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCE
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH------HHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCC-CCE
Confidence 4677777777666677777777777777777776544 34567777888888888777 44433 455555 888
Q ss_pred EEeecCeeeecCCccccccCCcceecccccccchh---hhccccEEEeecccccccC-CCCC---------------CCc
Q 038788 80 IAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT---ILKSLQMLFLHENILQGTI-PCSL---------------GNL 140 (278)
Q Consensus 80 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~---~~~~L~~l~l~~~~~~~~~-~~~~---------------~~~ 140 (278)
|++++|.+++..|..+..+++|+.|++++|.++.. .+++|+.+++++|.+.+.. +..+ ...
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 88888777777777777777888888877776542 2556666666665554210 0000 001
Q ss_pred ccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEE
Q 038788 141 TMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLD 220 (278)
Q Consensus 141 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 220 (278)
++|+.|++++|.+.+ +..+..+++|+.|++++|.+++..|..+..+++| +.|++++|.+.+ ++..+..+++|+.|+
T Consensus 232 ~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 232 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-ERLYISNNRLVA-LNLYGQPIPTLKVLD 307 (597)
T ss_dssp SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-CEEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-CEEECCCCCCCC-CCcccccCCCCcEEE
Confidence 234445555554432 2344555555555555555555555555555555 555555555552 333444455555555
Q ss_pred ccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 221 ISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 221 L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
+++|.+++.++....+++|+.|++++|.+.+. + +..+++|++|++++|+++
T Consensus 308 Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 308 LSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred CCCCCCCccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 55555553333322255555555555555422 1 444555666666666554
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.2e-31 Score=234.69 Aligned_cols=160 Identities=21% Similarity=0.216 Sum_probs=119.2
Q ss_pred ccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCC-cCccCCCCCcEEEeecCcCcccCCCCcccccccceeE
Q 038788 117 KSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL 195 (278)
Q Consensus 117 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L 195 (278)
++|++|++++|.+.+. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++| +.|
T Consensus 373 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L 450 (570)
T 2z63_A 373 TSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVL 450 (570)
T ss_dssp SCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEE
T ss_pred CccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC-cEE
Confidence 4444444444444422 2225566677777777777665444 356778888888888888877777788888888 888
Q ss_pred EccCCcCc-ccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcc
Q 038788 196 NLSDNLLS-GHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNL 273 (278)
Q Consensus 196 ~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 273 (278)
++++|.+. +.+|..+..+++|++|++++|.+++..+..+. +++|++|++++|++++..+..+.++++|++|++++|++
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 88888886 46777788888888888888888887666555 88899999999988877777788889999999999988
Q ss_pred cccCC
Q 038788 274 SGHIP 278 (278)
Q Consensus 274 ~~~~p 278 (278)
++..|
T Consensus 531 ~~~~~ 535 (570)
T 2z63_A 531 DCSCP 535 (570)
T ss_dssp CCCTT
T ss_pred cCCCc
Confidence 88765
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.1e-31 Score=231.81 Aligned_cols=262 Identities=18% Similarity=0.186 Sum_probs=167.1
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccc-cCCchhhcccccccE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGG-ALPFSLANLSTTMTG 79 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~ 79 (278)
||+++|+|++..|..|+++++|++|++++|+++.++. . .+++|++|++++|.+++ .+|..++++.. |++
T Consensus 50 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-------~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~-L~~ 119 (520)
T 2z7x_B 50 LIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-------H--PTVNLKHLDLSFNAFDALPICKEFGNMSQ-LKF 119 (520)
T ss_dssp EECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-------C--CCCCCSEEECCSSCCSSCCCCGGGGGCTT-CCE
T ss_pred EecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-------c--ccCCccEEeccCCccccccchhhhccCCc-ceE
Confidence 6899999999889999999999999999999986543 1 56777777777777764 35667776666 777
Q ss_pred EEeecCeeee-------------------------cCCccccc--------------------------cCCcceecccc
Q 038788 80 IAIGNNQISC-------------------------FIPDGIAN--------------------------LVNLNALGVEF 108 (278)
Q Consensus 80 L~l~~~~~~~-------------------------~~~~~l~~--------------------------l~~L~~L~l~~ 108 (278)
|++++|.+++ ..|..+.. +++|+.+++++
T Consensus 120 L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 199 (520)
T 2z7x_B 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199 (520)
T ss_dssp EEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred EEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence 7777666542 22222222 22233333322
Q ss_pred cc------------------------------cchhh---------hccccEEEeecccccccCCCCC------------
Q 038788 109 NQ------------------------------LAVTI---------LKSLQMLFLHENILQGTIPCSL------------ 137 (278)
Q Consensus 109 ~~------------------------------l~~~~---------~~~L~~l~l~~~~~~~~~~~~~------------ 137 (278)
|. +.... .++|++|++++|.+.+.+|..+
T Consensus 200 n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~ 279 (520)
T 2z7x_B 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279 (520)
T ss_dssp CCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEE
T ss_pred cccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeE
Confidence 21 11100 1255566666555554333332
Q ss_pred -----------------------------------------CCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCc
Q 038788 138 -----------------------------------------GNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNK 176 (278)
Q Consensus 138 -----------------------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~ 176 (278)
..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 280 ~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 359 (520)
T 2z7x_B 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359 (520)
T ss_dssp EEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC
T ss_pred eccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc
Confidence 345566666666666665556666666666666666666
Q ss_pred Ccc--cCCCCcccccccceeEEccCCcCc-------------------------ccCchhhhcCCCCCEEEccCCeeccc
Q 038788 177 PSG--TMPRQLPRIITLSVLLNLSDNLLS-------------------------GHFPAEVGKLKNLISLDISSNMFSSE 229 (278)
Q Consensus 177 ~~~--~~~~~~~~~~~L~~~L~l~~n~~~-------------------------~~~~~~~~~~~~L~~L~L~~n~~~~~ 229 (278)
+++ ..|..+..+++| +.|++++|.+. +..+..+. ++|+.|++++|.++..
T Consensus 360 l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i 436 (520)
T 2z7x_B 360 LKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI 436 (520)
T ss_dssp CCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC
T ss_pred cCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc
Confidence 653 233334444445 55555555544 33332221 5788888888887755
Q ss_pred CCCccCCCCccEEEccCCeecccCCcc-ccCCCCCcEEECCCCccccc
Q 038788 230 ISTTLGCTSLEYLCMQDNSFIGSIPST-LSSLKSITELDLSCNNLSGH 276 (278)
Q Consensus 230 ~~~~~~~~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ 276 (278)
+.....+++|++|++++|+++ .+|.. +..+++|++|++++|++++.
T Consensus 437 p~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 437 PKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred chhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 444556999999999999999 55654 88999999999999999864
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=8.6e-31 Score=242.28 Aligned_cols=222 Identities=22% Similarity=0.207 Sum_probs=157.8
Q ss_pred ccCCCCccEEEeecccccccCC-chhhcccccccEEEeecCeeeecCCcccccc--CCcceecccccccchhh------h
Q 038788 46 LTNCTKLGVLVLDANRFGGALP-FSLANLSTTMTGIAIGNNQISCFIPDGIANL--VNLNALGVEFNQLAVTI------L 116 (278)
Q Consensus 46 l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~l~~~~------~ 116 (278)
+.++++|++|++++|.+++..+ ..|.++.. |++|++++|.+++..+..+..+ ++|+.|+++.|.+.... +
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~-L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~ 197 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSS-CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCC-CCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhc
Confidence 4444555555555555443222 23444444 5555555555544444444444 45555555555443211 1
Q ss_pred c------cccEEEeecccccccCCCCCC------------------------------------C--cccccEEEcccCc
Q 038788 117 K------SLQMLFLHENILQGTIPCSLG------------------------------------N--LTMLTQRLLEVND 152 (278)
Q Consensus 117 ~------~L~~l~l~~~~~~~~~~~~~~------------------------------------~--~~~L~~L~l~~n~ 152 (278)
+ .|++|++++|.+.+..+..+. . .+++++|++++|.
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~ 277 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc
Confidence 2 288888888866543332221 1 2679999999999
Q ss_pred ccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCC
Q 038788 153 LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEIST 232 (278)
Q Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 232 (278)
+.+..+..+..+++|+.|++++|.+++..|..+..+++| +.|++++|.+++..+..+..+++|+.|++++|.+.+..+.
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNL-QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSC-CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCC-CEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence 987778889999999999999999998888899999999 9999999999977788899999999999999999887777
Q ss_pred ccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 233 TLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 233 ~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
.+. +++|+.|++++|.+.+ ++ .+++|+.+++++|+++
T Consensus 357 ~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 357 TFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp CSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC
T ss_pred hhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc
Confidence 666 9999999999999873 22 3677777777777766
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.4e-30 Score=236.06 Aligned_cols=271 Identities=19% Similarity=0.182 Sum_probs=152.1
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCc-----------------ccc-ccccCCCCccEEEeecccc
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDL-----------------HFI-TFLTNCTKLGVLVLDANRF 62 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-----------------~~~-~~l~~~~~L~~L~l~~~~l 62 (278)
||+++|.+++..+..|+++++|++|++++|.+++..++.+ .++ ..+.++++|++|++++|.+
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 4666677766555566666667777776666665433211 111 1355556666666666665
Q ss_pred cccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhh--------hccccEEEeecccccccCC
Q 038788 63 GGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI--------LKSLQMLFLHENILQGTIP 134 (278)
Q Consensus 63 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--------~~~L~~l~l~~~~~~~~~~ 134 (278)
++..|..|.++.. |++|++++|.+++..+..+..+++|++|++++|.++... +++|++|++++|.+.+..+
T Consensus 110 ~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 110 QKIKNNPFVKQKN-LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CCCCSCTTTTCTT-CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred CccChhHccccCC-CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 5333445555555 666666666665555555566666666666666553211 3566666666666654444
Q ss_pred CCCCCc---------------------------ccccEEEcccCcccccCCcCccCCCC--CcEEEeecCcCcccCCCCc
Q 038788 135 CSLGNL---------------------------TMLTQRLLEVNDLLGNIPPSIGNCKN--LILLTTRKNKPSGTMPRQL 185 (278)
Q Consensus 135 ~~~~~~---------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~ 185 (278)
..+..+ ++|++|++++|.+.+..+..+..++. |+.|++++|.+++..|..+
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~ 268 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc
Confidence 433332 23444555555554444444544433 6666666666665555666
Q ss_pred ccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeeccc-----CC----CccC-CCCccEEEccCCeecccCCc
Q 038788 186 PRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSE-----IS----TTLG-CTSLEYLCMQDNSFIGSIPS 255 (278)
Q Consensus 186 ~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-----~~----~~~~-~~~L~~l~l~~n~~~~~~~~ 255 (278)
..+++| +.+++++|.+.+..+..+..+++|+.|++++|...+. .+ ..+. +++|+++++++|.+.+..+.
T Consensus 269 ~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 269 AWLPQL-EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTCTTC-CEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred cCcccc-cEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 666666 6666666666655555555666666666655433210 11 1222 56677777777766665555
Q ss_pred cccCCCCCcEEECCCCcc
Q 038788 256 TLSSLKSITELDLSCNNL 273 (278)
Q Consensus 256 ~~~~~~~L~~L~l~~n~l 273 (278)
.+.++++|++|++++|.+
T Consensus 348 ~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp TTTTCTTCCEEECTTCBS
T ss_pred HhccccCCcEEECCCCch
Confidence 566666666666666543
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.8e-30 Score=230.33 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=61.7
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccc-cCCchhhcccccccE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGG-ALPFSLANLSTTMTG 79 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~ 79 (278)
||+++|+|++..|..|+++++|++|++++|+++..+. . .+++|++|++++|.+++ ..|..+.++.. |++
T Consensus 81 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-------~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~-L~~ 150 (562)
T 3a79_B 81 LRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-------C--PMASLRHLDLSFNDFDVLPVCKEFGNLTK-LTF 150 (562)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS-------C--CCTTCSEEECCSSCCSBCCCCGGGGGCTT-CCE
T ss_pred EECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc-------c--ccccCCEEECCCCCccccCchHhhcccCc-ccE
Confidence 5899999999889999999999999999999986543 1 56778888888887764 34567777766 777
Q ss_pred EEeecCeeee
Q 038788 80 IAIGNNQISC 89 (278)
Q Consensus 80 L~l~~~~~~~ 89 (278)
|++++|+++.
T Consensus 151 L~L~~n~l~~ 160 (562)
T 3a79_B 151 LGLSAAKFRQ 160 (562)
T ss_dssp EEEECSBCCT
T ss_pred EecCCCcccc
Confidence 7777777653
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.6e-30 Score=217.34 Aligned_cols=253 Identities=25% Similarity=0.299 Sum_probs=137.2
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEE
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIA 81 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 81 (278)
++++|.+.. ++ .++.+++|++|++++|++++.++ +..+++|++|++++|.++ .++ .+..+.. |++|+
T Consensus 50 ~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--------~~~l~~L~~L~L~~n~i~-~~~-~~~~l~~-L~~L~ 116 (347)
T 4fmz_A 50 VVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--------LSNLVKLTNLYIGTNKIT-DIS-ALQNLTN-LRELY 116 (347)
T ss_dssp ECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSSCCC-CCG-GGTTCTT-CSEEE
T ss_pred EEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--------hhcCCcCCEEEccCCccc-Cch-HHcCCCc-CCEEE
Confidence 445555543 22 25555566666666665554321 444555555555555544 222 3444443 55555
Q ss_pred eecCeeeecC---------------------CccccccCCcceecccccccchh----hhccccEEEeecccccccCCCC
Q 038788 82 IGNNQISCFI---------------------PDGIANLVNLNALGVEFNQLAVT----ILKSLQMLFLHENILQGTIPCS 136 (278)
Q Consensus 82 l~~~~~~~~~---------------------~~~l~~l~~L~~L~l~~~~l~~~----~~~~L~~l~l~~~~~~~~~~~~ 136 (278)
+++|.+++.. +..+..+++|+.|++++|.+... .+++|+++++++|.+.+.. .
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~ 194 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS--P 194 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG--G
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc--c
Confidence 5555444321 11234444444444444443321 1455555555555554221 1
Q ss_pred CCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCC
Q 038788 137 LGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNL 216 (278)
Q Consensus 137 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L 216 (278)
+..+++|+.+++++|.+....+ +..+++|+.|++++|.+++..+ +..++++ +.|++++|.+++ + ..+..+++|
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~l~~-~-~~~~~l~~L 267 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL-TWLEIGTNQISD-I-NAVKDLTKL 267 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC-CEEECCSSCCCC-C-GGGTTCTTC
T ss_pred ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC-CEEECCCCccCC-C-hhHhcCCCc
Confidence 4445555555555555442211 5566667777777776654332 5566666 777777777663 2 345666777
Q ss_pred CEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccC
Q 038788 217 ISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHI 277 (278)
Q Consensus 217 ~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 277 (278)
++|++++|.+++. +....+++|+.|++++|++.+..+..+.++++|++|++++|++++..
T Consensus 268 ~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 268 KMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred CEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 7777777776654 22223677777777777776666666677777777777777776544
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=232.08 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=90.5
Q ss_pred ccCCCCCcEEEeecCcCcccCC-CCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeec-ccCCCccC-CC
Q 038788 161 IGNCKNLILLTTRKNKPSGTMP-RQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFS-SEISTTLG-CT 237 (278)
Q Consensus 161 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~-~~ 237 (278)
+..+++|+.|++++|.+.+..+ ..+..+++| +.|++++|.+.+..+..+..+++|++|++++|.+. +..+..+. ++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 4455666666666666654444 456777888 88888888888777778888899999999999887 34555554 88
Q ss_pred CccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 238 SLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 238 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
+|+.|++++|++.+..+..+.++++|++|++++|++++..|
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 99999999999887778888899999999999999887654
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1e-30 Score=221.86 Aligned_cols=235 Identities=20% Similarity=0.173 Sum_probs=194.4
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.+++..|..++++++|++|++++|+++..++ ..+.++++|++|++++|.+++..|..+..+.. |++|
T Consensus 98 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L 170 (390)
T 3o6n_A 98 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNL 170 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT-CCEE
T ss_pred EECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH------HHhcCCCCCcEEECCCCccCccChhhccCCCC-CCEE
Confidence 5899999999888889999999999999999997654 33678899999999999998767777888877 9999
Q ss_pred EeecCeeeecCCccccccCCcceecccccccch-------------------hh---hccccEEEeecccccccCCCCCC
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAV-------------------TI---LKSLQMLFLHENILQGTIPCSLG 138 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~-------------------~~---~~~L~~l~l~~~~~~~~~~~~~~ 138 (278)
++++|++++.. +..+++|+.+++++|.++. .. .++|++|++++|.+++. ..+.
T Consensus 171 ~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 171 QLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp ECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGG
T ss_pred ECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHc
Confidence 99999988642 3445555555555554432 11 45788888888888743 5678
Q ss_pred CcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCE
Q 038788 139 NLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLIS 218 (278)
Q Consensus 139 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~ 218 (278)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ +|..+..+++| +.|++++|.+. .++..+..+++|++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L-~~L~L~~n~l~-~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL-KVLDLSHNHLL-HVERNQPQFDRLEN 322 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTC-CEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCC-CEEECCCCcce-ecCccccccCcCCE
Confidence 89999999999999988778889999999999999999975 56666788999 99999999999 67888889999999
Q ss_pred EEccCCeecccCCCccCCCCccEEEccCCeeccc
Q 038788 219 LDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGS 252 (278)
Q Consensus 219 L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 252 (278)
|++++|.+++.. ...+++|+.|++++|++.+.
T Consensus 323 L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 323 LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCccceeC--chhhccCCEEEcCCCCccch
Confidence 999999998664 23379999999999998753
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.5e-29 Score=210.06 Aligned_cols=256 Identities=18% Similarity=0.194 Sum_probs=189.3
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEE
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIA 81 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 81 (278)
+++++.++ .+|..+. +++++|++++|++++..+ ..+.++++|++|++++|.+++..|..+..+.. |++|+
T Consensus 37 ~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ 106 (330)
T 1xku_A 37 QCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKD------GDFKNLKNLHTLILINNKISKISPGAFAPLVK-LERLY 106 (330)
T ss_dssp ECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCT------TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT-CCEEE
T ss_pred EecCCCcc-ccCccCC--CCCeEEECCCCcCCEeCh------hhhccCCCCCEEECCCCcCCeeCHHHhcCCCC-CCEEE
Confidence 45555555 3555443 578888888888887544 34677888888888888888666777877777 88888
Q ss_pred eecCeeeecCCccccccCCcceecccccccchh------hhccccEEEeecccccc--cCCCCCCCcccccEEEcccCcc
Q 038788 82 IGNNQISCFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENILQG--TIPCSLGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 82 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~ 153 (278)
+++|+++. +|..+. ++|+.|++++|.+... .+++|++|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 88888773 444433 6888888888877532 26788888888888753 4566777788888888888887
Q ss_pred cccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCc
Q 038788 154 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTT 233 (278)
Q Consensus 154 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 233 (278)
. .+|..+. ++|+.|++++|.+++..|..+..+++| +.|++++|.+++..+..+..+++|++|++++|.++..+...
T Consensus 184 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l 259 (330)
T 1xku_A 184 T-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL-AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259 (330)
T ss_dssp C-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC-CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT
T ss_pred c-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC-CEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh
Confidence 6 4554443 788888888888887777778888888 88888888888666667788888888888888888555444
Q ss_pred cCCCCccEEEccCCeecccCCccccC------CCCCcEEECCCCccc
Q 038788 234 LGCTSLEYLCMQDNSFIGSIPSTLSS------LKSITELDLSCNNLS 274 (278)
Q Consensus 234 ~~~~~L~~l~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~l~ 274 (278)
..+++|++|++++|++++..+..+.. .+.++.+++++|++.
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 44888888888888888655545432 367888888888875
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4.3e-31 Score=233.66 Aligned_cols=145 Identities=18% Similarity=0.137 Sum_probs=116.4
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|++++..|..|+++++|++|++++|++++..+ ..+.++++|++|++++|.+++..|..++++.. |++|
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L 103 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG------DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS-LKYL 103 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT-CCEE
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccCh------hhccccccCCEEECCCCccCccCHHHhccCCC-CcEE
Confidence 5899999999888999999999999999999998654 45788899999999999998666666888877 9999
Q ss_pred EeecCeeeec-CCccccccCCcceeccccccc-c------hhhhccccEEEeecccccccCCCCCCCcccccEEEcccCc
Q 038788 81 AIGNNQISCF-IPDGIANLVNLNALGVEFNQL-A------VTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVND 152 (278)
Q Consensus 81 ~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~l-~------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 152 (278)
++++|.+++. .|..+..+++|+.|++++|.+ . ...+++|++|++++|.+.+..+..++.+++|++|+++.|.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 9999998863 467788999999999999873 2 1227889999999999987777777665555544444443
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.6e-30 Score=228.65 Aligned_cols=112 Identities=21% Similarity=0.109 Sum_probs=62.8
Q ss_pred cCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchh------------------hhcCCCCCEEEccC
Q 038788 162 GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAE------------------VGKLKNLISLDISS 223 (278)
Q Consensus 162 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~------------------~~~~~~L~~L~L~~ 223 (278)
..+++|++|++++|.++ .+|..+..+++| +.|++++|.++ .++.. ...+++|++|++++
T Consensus 384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 460 (549)
T ss_dssp GGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred hcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCC
Confidence 34445555555555544 344444455555 55555555544 11111 12455666666666
Q ss_pred CeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccC
Q 038788 224 NMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHI 277 (278)
Q Consensus 224 n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 277 (278)
|+++..+ ....+++|+.|++++|++++..+..+..+++|++|++++|++++..
T Consensus 461 N~l~~ip-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 461 NKLKTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp SCCSSCC-CGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CccCcCC-CcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 6665332 2223667777777777777666666677777777777777766543
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-29 Score=210.82 Aligned_cols=255 Identities=18% Similarity=0.182 Sum_probs=162.1
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEE
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIA 81 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 81 (278)
+++++.++ .+|..+. ++|++|++++|++++..+ ..+.++++|++|++++|.+++..|..+..+.. |++|+
T Consensus 39 ~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ 108 (332)
T 2ft3_A 39 QCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRK------DDFKGLQHLYALVLVNNKISKIHEKAFSPLRK-LQKLY 108 (332)
T ss_dssp ECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCCEECGGGSTTCTT-CCEEE
T ss_pred ECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCH------hHhhCCCCCcEEECCCCccCccCHhHhhCcCC-CCEEE
Confidence 34455554 3444442 456666666666665433 33566666667777666666555566666655 66777
Q ss_pred eecCeeeecCCccccccCCcceecccccccchh------hhccccEEEeecccccc--cCCCCCCCcccccEEEcccCcc
Q 038788 82 IGNNQISCFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENILQG--TIPCSLGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 82 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~~ 153 (278)
+++|+++ .+|..+. ++|++|++++|.+... .+++|++|++++|.++. ..+..+..+ +|++|++++|.+
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 7666666 3333333 5666666666665422 15666677777666642 344455555 666677776666
Q ss_pred cccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCc
Q 038788 154 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTT 233 (278)
Q Consensus 154 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 233 (278)
.+ +|..+. ++|+.|++++|.+++..+..+..+++| +.|++++|.+++..+..+..+++|++|++++|.++..+...
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l 260 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKL-YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL 260 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTC-SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCC-CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhh
Confidence 53 443332 577777788877776666777777777 78888888887655667777788888888888877544444
Q ss_pred cCCCCccEEEccCCeecccCCccccC------CCCCcEEECCCCccc
Q 038788 234 LGCTSLEYLCMQDNSFIGSIPSTLSS------LKSITELDLSCNNLS 274 (278)
Q Consensus 234 ~~~~~L~~l~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~l~ 274 (278)
..+++|+.|++++|++++..+..+.. .+.|+.+++++|+++
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 44788888888888877554444443 356778888888765
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.2e-30 Score=230.11 Aligned_cols=235 Identities=20% Similarity=0.170 Sum_probs=196.7
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.|++..|..|+.+++|++|++++|.+++.++ ..|.++++|++|++++|.+++..|..+..+.. |++|
T Consensus 104 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L 176 (597)
T 3oja_B 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR------GIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNL 176 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-CCEE
T ss_pred EECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH------HHhccCCCCCEEEeeCCcCCCCChhhhhcCCc-CcEE
Confidence 6899999999888889999999999999999997654 33688999999999999999777888888887 9999
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchhh----------------------hccccEEEeecccccccCCCCCC
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI----------------------LKSLQMLFLHENILQGTIPCSLG 138 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----------------------~~~L~~l~l~~~~~~~~~~~~~~ 138 (278)
++++|.+++.. +..+++|+.|++++|.+.... .++|+.|++++|.+++ +..+.
T Consensus 177 ~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 177 QLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp ECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGG
T ss_pred ECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--Chhhc
Confidence 99999988642 344556666666555543311 4568888888888774 35788
Q ss_pred CcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCE
Q 038788 139 NLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLIS 218 (278)
Q Consensus 139 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~ 218 (278)
.++.|++|++++|.+.+..|..+..+++|+.|++++|.+++ +|..+..+++| +.|++++|.+. .+|..+..+++|+.
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L-~~L~Ls~N~l~-~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL-KVLDLSHNHLL-HVERNQPQFDRLEN 328 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTC-CEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCC-cEEECCCCCCC-ccCcccccCCCCCE
Confidence 89999999999999998888899999999999999999985 56667788999 99999999999 78888899999999
Q ss_pred EEccCCeecccCCCccCCCCccEEEccCCeeccc
Q 038788 219 LDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGS 252 (278)
Q Consensus 219 L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 252 (278)
|++++|.+++.+ ...+++|+.|++++|.+.+.
T Consensus 329 L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 329 LYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 999999998764 22378999999999998753
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1e-29 Score=208.85 Aligned_cols=236 Identities=19% Similarity=0.193 Sum_probs=120.5
Q ss_pred CcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccccccc--CCchhhcccccccEE
Q 038788 3 TIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGA--LPFSLANLSTTMTGI 80 (278)
Q Consensus 3 l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~~~~~~~~~~L~~L 80 (278)
.+++.++ .+|..+. ++|++|++++|+++..++ ..+.++++|++|++++|.++.. .+..+..+.. |++|
T Consensus 14 c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-L~~L 83 (306)
T 2z66_A 14 CNSKGLT-SVPTGIP--SSATRLELESNKLQSLPH------GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS-LKYL 83 (306)
T ss_dssp CCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCT------TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC-CCEE
T ss_pred cCCCCcc-cCCCCCC--CCCCEEECCCCccCccCH------hHhhccccCCEEECCCCccCcccCcccccccccc-cCEE
Confidence 3444444 2444332 467777777777665433 2355667777777777766521 2445555555 7777
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchh-------hhccccEEEeecccccccCCCCCCCcccccEEEcccCcc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT-------ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 153 (278)
++++|.++. .|..+..+++|+.|++++|.+... .+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 84 ~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 84 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp ECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 777776663 444566666666666666655321 134455555555554444444444445555555555544
Q ss_pred cc-cCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCC
Q 038788 154 LG-NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEIST 232 (278)
Q Consensus 154 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 232 (278)
.+ ..|..+..+++|+.|++++|.+++..|..+..+++| +.|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 43 234444444555555555555444444444444444 4555555554433333444444555555555544444333
Q ss_pred ccC-C-CCccEEEccCCeec
Q 038788 233 TLG-C-TSLEYLCMQDNSFI 250 (278)
Q Consensus 233 ~~~-~-~~L~~l~l~~n~~~ 250 (278)
.+. + ++|+.|++++|++.
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEE
T ss_pred HHHhhhccCCEEEccCCCee
Confidence 332 2 24455555554444
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.2e-29 Score=211.95 Aligned_cols=256 Identities=25% Similarity=0.332 Sum_probs=187.5
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCC--------------Cc-cccccccCCCCccEEEeeccccccc
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTN--------------DL-HFITFLTNCTKLGVLVLDANRFGGA 65 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~--------------~~-~~~~~l~~~~~L~~L~l~~~~l~~~ 65 (278)
||+++|.+++. +. +..+++|++|++++|.++..+.- .+ .+ ..+..+++|++|++++|.....
T Consensus 71 L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 71 LNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSD 147 (347)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC-GGGTTCTTCCEEECTTCTTCCC
T ss_pred EEccCCccccc-hh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc-hhhccCCceeEEECCCCCCccc
Confidence 35566666543 22 55666666666666655543100 00 00 1144555555555555543322
Q ss_pred CCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchh----hhccccEEEeecccccccCCCCCCCcc
Q 038788 66 LPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT----ILKSLQMLFLHENILQGTIPCSLGNLT 141 (278)
Q Consensus 66 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~----~~~~L~~l~l~~~~~~~~~~~~~~~~~ 141 (278)
+..+..+.. |++|++++|.++...+ +..+++|+.|++++|.+... .+++|+.+++++|.+.+..+ +..++
T Consensus 148 -~~~~~~l~~-L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~ 221 (347)
T 4fmz_A 148 -LSPLSNMTG-LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMT 221 (347)
T ss_dssp -CGGGTTCTT-CCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCT
T ss_pred -ccchhhCCC-CcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCC
Confidence 233555555 8888888887765433 78899999999999988643 27899999999999985433 78899
Q ss_pred cccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEc
Q 038788 142 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDI 221 (278)
Q Consensus 142 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 221 (278)
+|++|++++|.+... +. +..+++|++|++++|.+++. ..+..+++| +.+++++|.+++ . ..+..+++|+.|++
T Consensus 222 ~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-~~L~l~~n~l~~-~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 222 RLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKL-KMLNVGSNQISD-I-SVLNNLSQLNSLFL 294 (347)
T ss_dssp TCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC-CEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred cCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCc-CEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence 999999999998743 33 88999999999999998753 457788899 999999999985 3 46788999999999
Q ss_pred cCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 222 SSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 222 ~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
++|.+++..+..+. +++|+.|++++|++++..+ +..+++|++|++++|+++
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999887766555 9999999999999986544 789999999999999986
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=216.99 Aligned_cols=264 Identities=18% Similarity=0.190 Sum_probs=175.5
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEE
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIA 81 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 81 (278)
|.+++.++ .+|..+. ++|++|++++|++++.++ ..+.++++|++|++++|.+++..|..+.++.. |++|+
T Consensus 37 ~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ 106 (353)
T 2z80_A 37 KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISN------SDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-LEHLD 106 (353)
T ss_dssp ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEE
T ss_pred eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCH------HHhccCCCCCEEECCCCccCccCHhhcCCCCC-CCEEE
Confidence 34555555 3555443 367777777777776543 24667777777777777777555666766666 77777
Q ss_pred eecCeeeecCCccccccCCcceecccccccchh-------hhccccEEEeecc-cccccCCCCCCCcccccEEEcccCcc
Q 038788 82 IGNNQISCFIPDGIANLVNLNALGVEFNQLAVT-------ILKSLQMLFLHEN-ILQGTIPCSLGNLTMLTQRLLEVNDL 153 (278)
Q Consensus 82 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-------~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~ 153 (278)
+++|++++..+..+..+++|++|++++|++... .+++|++|++++| .+....+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 777777754444467777777777777766421 2667777777777 35544456677777777777777777
Q ss_pred cccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhh---hcCCCCCEEEccCCeeccc-
Q 038788 154 LGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV---GKLKNLISLDISSNMFSSE- 229 (278)
Q Consensus 154 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~---~~~~~L~~L~L~~n~~~~~- 229 (278)
.+..+..+..+++|++|++++|.++...+..+..++++ +.|++++|.+++..+..+ .....++.++++++.+.+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV-ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE-EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccc-cEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 66666677777777777777777653222223345666 777777777764332222 2345666777777666541
Q ss_pred ---CCCcc-CCCCccEEEccCCeecccCCcc-ccCCCCCcEEECCCCcccccC
Q 038788 230 ---ISTTL-GCTSLEYLCMQDNSFIGSIPST-LSSLKSITELDLSCNNLSGHI 277 (278)
Q Consensus 230 ---~~~~~-~~~~L~~l~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~ 277 (278)
.+..+ .+++|+.|++++|+++ .+|.. +.++++|++|++++|++++..
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 22222 3889999999999998 55555 588999999999999998754
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=8.4e-29 Score=222.28 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=61.8
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
|||++|+|++..+..|+++++|++|++++|+++++++. +|.++++|++|++++|+++...+..|.++.. |++|
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~------~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~-L~~L 129 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG------AYQSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKL 129 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT------TTTTCTTCCEEECTTCCCCEECGGGGTTCTT-CCEE
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh------HhcCCCCCCEEEccCCcCCCCCHHHhcCCCC-CCEE
Confidence 68888888877777888888888888888888876553 2445555555555555555222233444444 5555
Q ss_pred EeecCeeeecCCccccccCCcceeccccccc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQL 111 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 111 (278)
++++|++++..+..+..+++|+.|++++|.+
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 5555554443333344444444444444433
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=9.2e-29 Score=214.58 Aligned_cols=251 Identities=27% Similarity=0.304 Sum_probs=114.4
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.+++..+ ++++++|++|++++|.+++..+ +.++++|++|++++|.+++ ++. +..+.. |++|
T Consensus 73 L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~-L~~L 139 (466)
T 1o6v_A 73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--------LANLTNLTGLTLFNNQITD-IDP-LKNLTN-LNRL 139 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSSCCCC-CGG-GTTCTT-CSEE
T ss_pred EECCCCccCCchh--hhccccCCEEECCCCccccChh--------hcCCCCCCEEECCCCCCCC-ChH-HcCCCC-CCEE
Confidence 4667777765433 6666666666666666665421 3444444444444444442 111 333333 4444
Q ss_pred EeecCeeeecC-------------------CccccccCCcceecccccccchhh--------------------------
Q 038788 81 AIGNNQISCFI-------------------PDGIANLVNLNALGVEFNQLAVTI-------------------------- 115 (278)
Q Consensus 81 ~l~~~~~~~~~-------------------~~~l~~l~~L~~L~l~~~~l~~~~-------------------------- 115 (278)
++++|.+++.. ...+..+++|+.|++++|.+....
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 219 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 219 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccc
Confidence 44444333210 011333444444444444432211
Q ss_pred hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeE
Q 038788 116 LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL 195 (278)
Q Consensus 116 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L 195 (278)
+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++| +.|
T Consensus 220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L 292 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL-TNL 292 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC-SEE
T ss_pred cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc-CeE
Confidence 33444444444443321 233344445555555554432211 4444555555555555443222 4444455 555
Q ss_pred EccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccc
Q 038788 196 NLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSG 275 (278)
Q Consensus 196 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 275 (278)
++++|.+.+. +. +..+++|+.|++++|.+++..+ ...+++|+.|++++|++.+. ..+..+++|++|++++|++++
T Consensus 293 ~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 293 ELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp ECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred EcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 5555555422 11 4445555555555555544333 11245555555555554432 234455555555555555544
Q ss_pred c
Q 038788 276 H 276 (278)
Q Consensus 276 ~ 276 (278)
.
T Consensus 368 ~ 368 (466)
T 1o6v_A 368 L 368 (466)
T ss_dssp C
T ss_pred c
Confidence 4
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=9.6e-29 Score=214.44 Aligned_cols=248 Identities=30% Similarity=0.374 Sum_probs=166.3
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
|+++++.+.. +| .+..+++|++|++++|.+++.++ +.++++|++|++++|.+++. +. +.++.. |++|
T Consensus 51 L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--------~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~-L~~L 117 (466)
T 1o6v_A 51 LQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--------LKNLTKLVDILMNNNQIADI-TP-LANLTN-LTGL 117 (466)
T ss_dssp EECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--------GTTCTTCCEEECCSSCCCCC-GG-GTTCTT-CCEE
T ss_pred EecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--------hhccccCCEEECCCCccccC-hh-hcCCCC-CCEE
Confidence 4677888875 55 48899999999999999997532 78899999999999999844 33 777777 9999
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchh-------------------------hhccccEEEeecccccccCCC
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT-------------------------ILKSLQMLFLHENILQGTIPC 135 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-------------------------~~~~L~~l~l~~~~~~~~~~~ 135 (278)
++++|.+++..+ +..+++|++|++++|.+... .+++|++|++++|.+.+. .
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~ 193 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--S 193 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--G
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--h
Confidence 999999986533 88999999999999987432 156788888888887642 3
Q ss_pred CCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCC
Q 038788 136 SLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKN 215 (278)
Q Consensus 136 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~ 215 (278)
.+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++| +.|++++|.+.+..+ +..+++
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L~l~~n~l~~~~~--~~~l~~ 266 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNL-TDLDLANNQISNLAP--LSGLTK 266 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCCCGG--GTTCTT
T ss_pred hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCC-CEEECCCCccccchh--hhcCCC
Confidence 46777888888888887764432 55666777777777666532 234555555 666666666553222 455555
Q ss_pred CCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccc
Q 038788 216 LISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSG 275 (278)
Q Consensus 216 L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 275 (278)
|+.|++++|.+++..+ ...+++|+.|++++|++.+..+ +..+++|++|++++|++++
T Consensus 267 L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 267 LTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp CSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred CCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 5555555555554332 2224555555555555443221 3444445555555554443
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=7.7e-29 Score=205.40 Aligned_cols=234 Identities=18% Similarity=0.194 Sum_probs=184.6
Q ss_pred cccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCcccccc
Q 038788 19 LQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANL 98 (278)
Q Consensus 19 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 98 (278)
..+++.|++++++++..+ ..+.++++|++|++++|.++ .+|..+.++.. |++|++++|.++ .+|..+..+
T Consensus 80 ~~~l~~L~L~~n~l~~lp-------~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~-L~~L~Ls~n~l~-~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFP-------DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAG-LETLTLARNPLR-ALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCSSCC-------SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTT-CSEEEEESCCCC-CCCGGGGGC
T ss_pred ccceeEEEccCCCchhcC-------hhhhhCCCCCEEECCCCCcc-chhHHHhccCC-CCEEECCCCccc-cCcHHHhcC
Confidence 478999999999998543 44777899999999999999 89999988888 999999999998 678889999
Q ss_pred CCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCc
Q 038788 99 VNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS 178 (278)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 178 (278)
++|+.|++++|.+.......+... .....+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLAST---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEE---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred cCCCEEECCCCCCccccChhHhhc---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 999999999877653221111111 12233455788888888888877 67777888888888888888887
Q ss_pred ccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccc
Q 038788 179 GTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTL 257 (278)
Q Consensus 179 ~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~ 257 (278)
+ +|..+..+++| +.|++++|.+.+.+|..+..+++|++|++++|.+.+..+..+. +++|+.|++++|.+.+.+|..+
T Consensus 220 ~-l~~~l~~l~~L-~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 220 A-LGPAIHHLPKL-EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp C-CCGGGGGCTTC-CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred c-CchhhccCCCC-CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 4 56667788888 8888888888777888888888888888888877776665555 8888888888888888888888
Q ss_pred cCCCCCcEEECCCCccc
Q 038788 258 SSLKSITELDLSCNNLS 274 (278)
Q Consensus 258 ~~~~~L~~L~l~~n~l~ 274 (278)
.++++|+.+++..+.+.
T Consensus 298 ~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGSCTTCEEECCGGGSC
T ss_pred hhccCceEEeCCHHHHH
Confidence 88888888888876553
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=6.4e-31 Score=217.06 Aligned_cols=256 Identities=18% Similarity=0.151 Sum_probs=197.5
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEE
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIA 81 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 81 (278)
|++.+.+...++..+..+++|++|++++|++++..+ ..+.++++|++|++++|.+++..+ +..+.. |++|+
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~-L~~L~ 86 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISA------ADLAPFTKLELLNLSSNVLYETLD--LESLST-LRTLD 86 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCH------HHHTTCTTCCEEECTTSCCEEEEE--ETTCTT-CCEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCH------HHhhCCCcCCEEECCCCcCCcchh--hhhcCC-CCEEE
Confidence 556666665555556677899999999999987543 557888999999999999875443 666766 99999
Q ss_pred eecCeeeecCCccccccCCcceecccccccchhh---hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCC
Q 038788 82 IGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI---LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIP 158 (278)
Q Consensus 82 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~---~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 158 (278)
+++|++++.. ..++|+.|++++|.++... +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 87 Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 87 LNNNYVQELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp CCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CcCCcccccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 9999987542 3488999999999886543 7789999999999887666778888999999999998876655
Q ss_pred cCc-cCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCC
Q 038788 159 PSI-GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCT 237 (278)
Q Consensus 159 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 237 (278)
..+ ..+++|++|++++|.+++. +. ...+++| +.|++++|.++ .++..+..+++|++|++++|.+++.+.....++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L-~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKL-KTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTC-CEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccccccC-CEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCC
Confidence 555 4678899999999988754 32 2347778 88899999988 455568888999999999998886655544488
Q ss_pred CccEEEccCCeec-ccCCccccCCCCCcEEECCCC-cccc
Q 038788 238 SLEYLCMQDNSFI-GSIPSTLSSLKSITELDLSCN-NLSG 275 (278)
Q Consensus 238 ~L~~l~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n-~l~~ 275 (278)
+|+.+++++|++. +.++.++..++.|+.++++++ .++|
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 9999999999887 567777788888888877743 3444
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.1e-28 Score=201.78 Aligned_cols=205 Identities=20% Similarity=0.279 Sum_probs=175.9
Q ss_pred CCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeeccc
Q 038788 49 CTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENI 128 (278)
Q Consensus 49 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~ 128 (278)
.+++++|++++|.++ .+|..++++.. |++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~---------------- 140 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR---------------- 140 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTT-CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC----------------
T ss_pred ccceeEEEccCCCch-hcChhhhhCCC-CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc----------------
Confidence 478899999999988 88888888776 999999999988 67877888777777777766554
Q ss_pred ccccCCCCCCCcccccEEEcccCcccccCCcCcc---------CCCCCcEEEeecCcCcccCCCCcccccccceeEEccC
Q 038788 129 LQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIG---------NCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSD 199 (278)
Q Consensus 129 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~ 199 (278)
.+|..+..+++|++|++++|.+.+.+|..+. .+++|+.|++++|.++ .+|..+..+++| +.|++++
T Consensus 141 ---~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~ 215 (328)
T 4fcg_A 141 ---ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRN 215 (328)
T ss_dssp ---CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEES
T ss_pred ---cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccC
Confidence 4566677777888888887776666666554 4999999999999998 788889999999 9999999
Q ss_pred CcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 200 NLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 200 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
|.+. .++..+..+++|++|++++|.+.+..+..+. +++|+.|++++|.+.+.+|..+.++++|++|++++|++.|.+|
T Consensus 216 N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 216 SPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp SCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 9999 5777899999999999999998887777666 9999999999999998999999999999999999999999988
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.7e-28 Score=211.83 Aligned_cols=200 Identities=23% Similarity=0.207 Sum_probs=137.2
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.+++. | .++.+++|++|++++|++++.+ +..+++|++|++++|.+++ ++ ++.+.. |++|
T Consensus 47 L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~---------~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~-L~~L 111 (457)
T 3bz5_A 47 LDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD---------LSQNTNLTYLACDSNKLTN-LD--VTPLTK-LTYL 111 (457)
T ss_dssp EECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC---------CTTCTTCSEEECCSSCCSC-CC--CTTCTT-CCEE
T ss_pred EEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc---------cccCCCCCEEECcCCCCce-ee--cCCCCc-CCEE
Confidence 57888888874 4 6888888999999888888741 6677888888888888874 33 666666 8888
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchhh---hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccC
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI---LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNI 157 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~---~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 157 (278)
++++|++++. + +..+++|+.|++++|+++... +++|++|++++|...+.+ .+..+++|++|++++|.+.+ +
T Consensus 112 ~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 112 NCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp ECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred ECCCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence 8888887753 3 677888888888888775432 667777777777443333 45566777777777776654 3
Q ss_pred CcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccC
Q 038788 158 PPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEI 230 (278)
Q Consensus 158 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 230 (278)
+ +..+++|+.|++++|.+++. .+..+++| +.|++++|.+++ +| +..+++|+.|++++|.+++.+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L-~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQL-TFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTC-SEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCC-CEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 3 55666677777776666543 25556666 666777766664 34 556666666666666666543
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.2e-29 Score=202.66 Aligned_cols=258 Identities=19% Similarity=0.212 Sum_probs=152.6
Q ss_pred CcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEe
Q 038788 3 TIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAI 82 (278)
Q Consensus 3 l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l 82 (278)
.+++.++. +|..+ .++|++|++++|++++..+ ..+..+++|++|++++|.+++..|..+..+.. |++|++
T Consensus 18 c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l 87 (285)
T 1ozn_A 18 CPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPA------ASFRACRNLTILWLHSNVLARIDAAAFTGLAL-LEQLDL 87 (285)
T ss_dssp CCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECT------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEEC
T ss_pred cCcCCccc-CCcCC--CCCceEEEeeCCcCCccCH------HHcccCCCCCEEECCCCccceeCHhhcCCccC-CCEEeC
Confidence 34444442 34333 3467777777777776443 33566777777777777776555666666666 777777
Q ss_pred ecCe-eeecCCccccccCCcceecccccccchh------hhccccEEEeecccccccCCCCCCCcccccEEEcccCcccc
Q 038788 83 GNNQ-ISCFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLG 155 (278)
Q Consensus 83 ~~~~-~~~~~~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 155 (278)
++|. ++...+..+..+++|+.|++++|.+... .+++|++|++++|.+....+..+..+++|++|++++|.+..
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 7775 6655566677777777777777766432 15666667777666665444456666667777777666654
Q ss_pred cCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC
Q 038788 156 NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG 235 (278)
Q Consensus 156 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 235 (278)
..+..+..+++|+.|++++|.+++..|..+..+++| +.|++++|.+++..+..+..+++|+.|++++|.+....+....
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~ 246 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL 246 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccc-cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH
Confidence 444446666667777777766666666666666666 6667777766644444566666677777776666532211100
Q ss_pred CCCccEEEccCCeecccCCccccC--CCCCcEEECCCC
Q 038788 236 CTSLEYLCMQDNSFIGSIPSTLSS--LKSITELDLSCN 271 (278)
Q Consensus 236 ~~~L~~l~l~~n~~~~~~~~~~~~--~~~L~~L~l~~n 271 (278)
...++.+....+.+....|..+.+ +..+...++.+|
T Consensus 247 ~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 122333334444444445554433 333444444443
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.6e-27 Score=206.02 Aligned_cols=241 Identities=20% Similarity=0.194 Sum_probs=196.0
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCC
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVN 100 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 100 (278)
..+.+++++..++.++.. +. +++++|++++|.+++..+..|.++.. |++|++++|++++..+..+..+++
T Consensus 55 ~~~~v~c~~~~l~~iP~~-------~~--~~l~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~ 124 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG-------IP--SNTRYLNLMENNIQMIQADTFRHLHH-LEVLQLGRNSIRQIEVGAFNGLAS 124 (452)
T ss_dssp SSCEEECCSSCCSSCCSC-------CC--TTCSEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCcEEEECCCCcCccCCC-------CC--CCccEEECcCCcCceECHHHcCCCCC-CCEEECCCCccCCcChhhccCccc
Confidence 346777777777765431 21 57888999988888666777887777 999999988888877788888889
Q ss_pred cceecccccccchhh------hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCC-cCccCCCCCcEEEee
Q 038788 101 LNALGVEFNQLAVTI------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTR 173 (278)
Q Consensus 101 L~~L~l~~~~l~~~~------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~ 173 (278)
|+.|++++|.++... +++|++|++++|.+....+..+..+++|++|+++++...+.++ ..+..+++|+.|+++
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 999999888875432 7788999999998886666688889999999999854444444 457889999999999
Q ss_pred cCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeeccc
Q 038788 174 KNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGS 252 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~ 252 (278)
+|.+++ +| .+..+++| +.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+. +++|+.|++++|++++.
T Consensus 205 ~n~l~~-~~-~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 205 MCNIKD-MP-NLTPLVGL-EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp TSCCSS-CC-CCTTCTTC-CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccc-cc-cccccccc-cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 999874 34 47788888 9999999999987788899999999999999999987777666 89999999999999876
Q ss_pred CCccccCCCCCcEEECCCCccc
Q 038788 253 IPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 253 ~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
.+..+..+++|++|++++|++.
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSCEE
T ss_pred ChHHhccccCCCEEEccCCCcC
Confidence 6677888999999999999864
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-28 Score=202.78 Aligned_cols=254 Identities=19% Similarity=0.142 Sum_probs=207.0
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
|++++|+++...+..|+++++|++|++++|+++... ..+..+..+++|++|++++|.++ .+|..+..+.. |++|
T Consensus 33 L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~-L~~L 106 (306)
T 2z66_A 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG----CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ-LEHL 106 (306)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE----EEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTT-CCEE
T ss_pred EECCCCccCccCHhHhhccccCCEEECCCCccCccc----CcccccccccccCEEECCCCccc-cChhhcCCCCC-CCEE
Confidence 578999999655555899999999999999998542 12344667899999999999998 67777888877 9999
Q ss_pred EeecCeeeecCC-ccccccCCcceecccccccchh------hhccccEEEeecccccc-cCCCCCCCcccccEEEcccCc
Q 038788 81 AIGNNQISCFIP-DGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENILQG-TIPCSLGNLTMLTQRLLEVND 152 (278)
Q Consensus 81 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~ 152 (278)
++++|++++..+ ..+..+++|+.|++++|.+... .+++|++|++++|.+.+ ..+..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 999999987654 5788999999999999987532 27899999999999986 578889999999999999999
Q ss_pred ccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcC-CCCCEEEccCCeecccCC
Q 038788 153 LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKL-KNLISLDISSNMFSSEIS 231 (278)
Q Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~-~~L~~L~L~~n~~~~~~~ 231 (278)
+.+..+..+..+++|+.|++++|.+++..+..+..+++| +.|++++|.+.+..+..+..+ ++|++|++++|.+.....
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL-QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC-CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC-CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 987778889999999999999999987666678889999 999999999998888888887 499999999999976422
Q ss_pred C--ccC-CCCccEEEccCCeecccCCccccCCC
Q 038788 232 T--TLG-CTSLEYLCMQDNSFIGSIPSTLSSLK 261 (278)
Q Consensus 232 ~--~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~ 261 (278)
. +.. +...+.+....+.+....|..+.+.+
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred hHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 1 111 33444445555566666676666644
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=204.68 Aligned_cols=240 Identities=21% Similarity=0.203 Sum_probs=173.4
Q ss_pred ccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCc
Q 038788 22 LSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNL 101 (278)
Q Consensus 22 L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 101 (278)
.+.+++++.+++.++.. +. +++++|++++|.++...+..|.++.. |++|++++|.++...+..+..+++|
T Consensus 45 ~~~v~c~~~~l~~iP~~-------~~--~~l~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG-------IS--TNTRLLNLHENQIQIIKVNSFKHLRH-LEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp SCEEECCSCCCSSCCSC-------CC--TTCSEEECCSCCCCEECTTTTSSCSS-CCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCEEEeCCCCcCcCCCC-------CC--CCCcEEEccCCcCCeeCHHHhhCCCC-CCEEECCCCcCCccChhhccCCccC
Confidence 45666766666654431 21 56777777777777555566666666 7777777777776666677777777
Q ss_pred ceecccccccchhh------hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCC-cCccCCCCCcEEEeec
Q 038788 102 NALGVEFNQLAVTI------LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRK 174 (278)
Q Consensus 102 ~~L~l~~~~l~~~~------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~ 174 (278)
+.|++++|+++... +++|++|++++|.+....+..+..+++|++|++++|...+.++ ..+..+++|+.|++++
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 77777777765321 5677777777777776656677778888888888754333433 3577788888888888
Q ss_pred CcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccC
Q 038788 175 NKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSI 253 (278)
Q Consensus 175 ~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~ 253 (278)
|.++ .+| .+..+++| +.|++++|.+++..+..+..+++|+.|++++|.+++..+..+. +++|+.|++++|++++..
T Consensus 195 n~l~-~~~-~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 195 CNLR-EIP-NLTPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp SCCS-SCC-CCTTCSSC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CcCc-ccc-ccCCCccc-CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 8876 344 36677777 8888888888876677788888888888888888877666665 788888888888888666
Q ss_pred CccccCCCCCcEEECCCCccc
Q 038788 254 PSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 254 ~~~~~~~~~L~~L~l~~n~l~ 274 (278)
+..+..+++|++|++++|++.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 666777888888888888763
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.7e-27 Score=191.09 Aligned_cols=224 Identities=17% Similarity=0.102 Sum_probs=132.2
Q ss_pred ccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCc
Q 038788 22 LSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNL 101 (278)
Q Consensus 22 L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 101 (278)
-++++++++.++.++.. + .++|++|++++|.++...+..+..+.. |++|++++|.+++..+..+..+++|
T Consensus 13 ~~~~~c~~~~l~~ip~~-------~--~~~l~~L~l~~n~i~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L 82 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVG-------I--PAASQRIFLHGNRISHVPAASFRACRN-LTILWLHSNVLARIDAAAFTGLALL 82 (285)
T ss_dssp SCEEECCSSCCSSCCTT-------C--CTTCSEEECTTSCCCEECTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CeEEEcCcCCcccCCcC-------C--CCCceEEEeeCCcCCccCHHHcccCCC-CCEEECCCCccceeCHhhcCCccCC
Confidence 36788888877765431 1 357888888888888555566777766 8888888888887777788888888
Q ss_pred ceecccccc-cchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCccc
Q 038788 102 NALGVEFNQ-LAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGT 180 (278)
Q Consensus 102 ~~L~l~~~~-l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 180 (278)
+.|++++|. +.. ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 83 ~~L~l~~n~~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 144 (285)
T 1ozn_A 83 EQLDLSDNAQLRS------------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144 (285)
T ss_dssp CEEECCSCTTCCC------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CEEeCCCCCCccc------------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc
Confidence 888887775 432 2234444455555555555555443344445555555555555555443
Q ss_pred CCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccC
Q 038788 181 MPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSS 259 (278)
Q Consensus 181 ~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~ 259 (278)
.+..+..+++| +.|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|++.+..+..+..
T Consensus 145 ~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 145 PDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp CTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred CHhHhccCCCc-cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence 34444455555 5555555555533333445555555555555555554444333 555555555555555433344555
Q ss_pred CCCCcEEECCCCccc
Q 038788 260 LKSITELDLSCNNLS 274 (278)
Q Consensus 260 ~~~L~~L~l~~n~l~ 274 (278)
+++|++|++++|+++
T Consensus 224 l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 224 LRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred CcccCEEeccCCCcc
Confidence 555555555555554
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=204.48 Aligned_cols=228 Identities=18% Similarity=0.184 Sum_probs=187.1
Q ss_pred eccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeec
Q 038788 11 KVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCF 90 (278)
Q Consensus 11 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 90 (278)
.+|..+. ++++.|++++|+++...+ ..|.++++|++|++++|.++...+..|.++.. |++|++++|+++..
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~-L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKV------NSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN-LNTLELFDNRLTTI 127 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECT------TTTSSCSSCCEEECCSSCCCEECGGGGTTCSS-CCEEECCSSCCSSC
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCH------HHhhCCCCCCEEECCCCcCCccChhhccCCcc-CCEEECCCCcCCee
Confidence 3555543 578899999999887654 45778899999999999888656677777777 99999999998877
Q ss_pred CCccccccCCcceecccccccchh------hhccccEEEeecc-cccccCCCCCCCcccccEEEcccCcccccCCcCccC
Q 038788 91 IPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHEN-ILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGN 163 (278)
Q Consensus 91 ~~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 163 (278)
.+..+..+++|+.|++++|.+... .+++|++|++++| .+....+..+..+++|++|++++|.+. .+| .+..
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~ 205 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTP 205 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTT
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCC
Confidence 667788899999999999987532 2788999999884 444344457888999999999999887 444 5788
Q ss_pred CCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEE
Q 038788 164 CKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYL 242 (278)
Q Consensus 164 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l 242 (278)
+++|+.|++++|.+++..|..+..+++| +.|++++|.+.+..+..+..+++|+.|+|++|++++.++..+. +++|+.|
T Consensus 206 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIRPGSFQGLMHL-QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp CSSCCEEECTTSCCCEECTTTTTTCTTC-CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred CcccCEEECCCCccCccChhhhccCccC-CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 8999999999999988888889999999 9999999999977778888899999999999999987777766 8999999
Q ss_pred EccCCeec
Q 038788 243 CMQDNSFI 250 (278)
Q Consensus 243 ~l~~n~~~ 250 (278)
++++|.+.
T Consensus 285 ~L~~Np~~ 292 (440)
T 3zyj_A 285 HLHHNPWN 292 (440)
T ss_dssp ECCSSCEE
T ss_pred EcCCCCcc
Confidence 99999875
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.8e-27 Score=205.71 Aligned_cols=227 Identities=19% Similarity=0.160 Sum_probs=188.8
Q ss_pred ccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecC
Q 038788 12 VSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFI 91 (278)
Q Consensus 12 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 91 (278)
+|..+. +++++|++++|++++..+ ..|.++++|++|++++|.+++..+..|.++.. |++|++++|+++...
T Consensus 69 iP~~~~--~~l~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 69 VPQGIP--SNTRYLNLMENNIQMIQA------DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLAS-LNTLELFDNWLTVIP 139 (452)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCSBCC
T ss_pred cCCCCC--CCccEEECcCCcCceECH------HHcCCCCCCCEEECCCCccCCcChhhccCccc-CCEEECCCCcCCccC
Confidence 554443 578999999999987644 45778899999999999998666778887777 999999999998777
Q ss_pred CccccccCCcceecccccccchh------hhccccEEEeecc-cccccCCCCCCCcccccEEEcccCcccccCCcCccCC
Q 038788 92 PDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHEN-ILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNC 164 (278)
Q Consensus 92 ~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 164 (278)
+..+..+++|+.|++++|.+... .+++|++|++++| .+....+..+..+++|++|++++|.+.+ ++ .+..+
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l 217 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPL 217 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTC
T ss_pred hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-ccccc
Confidence 77788899999999999988632 2788999999984 4444444568889999999999999874 33 57888
Q ss_pred CCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEE
Q 038788 165 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLC 243 (278)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~ 243 (278)
++|+.|++++|.+++..|..+..+++| +.|++++|.+.+..+..+..+++|+.|++++|.+++.++..+. +++|+.|+
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSL-KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE
T ss_pred ccccEEECcCCcCcccCcccccCccCC-CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE
Confidence 999999999999998888889999999 9999999999977788888999999999999999987777766 89999999
Q ss_pred ccCCeec
Q 038788 244 MQDNSFI 250 (278)
Q Consensus 244 l~~n~~~ 250 (278)
+++|.+.
T Consensus 297 L~~Np~~ 303 (452)
T 3zyi_A 297 LHHNPWN 303 (452)
T ss_dssp CCSSCEE
T ss_pred ccCCCcC
Confidence 9999875
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=205.10 Aligned_cols=243 Identities=18% Similarity=0.155 Sum_probs=198.8
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCch-hhcccccccE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFS-LANLSTTMTG 79 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~L~~ 79 (278)
||+++|.+++..+..++++++|++|++++|++++..+ ..+.++++|++|++++|.++ .+|.. +.++.. |++
T Consensus 57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~-L~~ 128 (353)
T 2z80_A 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE------DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSS-LTF 128 (353)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTT-CSE
T ss_pred EECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH------hhcCCCCCCCEEECCCCcCC-cCCHhHhCCCcc-CCE
Confidence 6899999998777789999999999999999998644 45788999999999999998 45554 777777 999
Q ss_pred EEeecCeeeecCC-ccccccCCcceecccccc-cch------hhhccccEEEeecccccccCCCCCCCcccccEEEcccC
Q 038788 80 IAIGNNQISCFIP-DGIANLVNLNALGVEFNQ-LAV------TILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVN 151 (278)
Q Consensus 80 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-l~~------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 151 (278)
|++++|+++...+ ..+..+++|+.|++++|. +.. ..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 9999999986544 478899999999999984 432 22789999999999999888899999999999999999
Q ss_pred cccccCCcC-ccCCCCCcEEEeecCcCcccCCCCcc---cccccceeEEccCCcCcc----cCchhhhcCCCCCEEEccC
Q 038788 152 DLLGNIPPS-IGNCKNLILLTTRKNKPSGTMPRQLP---RIITLSVLLNLSDNLLSG----HFPAEVGKLKNLISLDISS 223 (278)
Q Consensus 152 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~~L~l~~n~~~~----~~~~~~~~~~~L~~L~L~~ 223 (278)
.+. .++.. +..+++|+.|++++|.+++..+..+. ....+ +.+++.++.+++ .+|..+..+++|+.|++++
T Consensus 209 ~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l-~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 209 QHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI-KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp CST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC-CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred ccc-cchhhhhhhcccccEEECCCCccccccccccccccccchh-hccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 885 33333 44589999999999999865544333 23445 777888888774 4677788999999999999
Q ss_pred CeecccCCCccC-CCCccEEEccCCeecccC
Q 038788 224 NMFSSEISTTLG-CTSLEYLCMQDNSFIGSI 253 (278)
Q Consensus 224 n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~ 253 (278)
|.++..+...+. +++|+++++++|++.+..
T Consensus 287 N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 999977766654 999999999999988643
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.9e-29 Score=207.82 Aligned_cols=245 Identities=19% Similarity=0.147 Sum_probs=195.1
Q ss_pred ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccccc-ccCCchhh-------cccccccEEEeecCee
Q 038788 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFG-GALPFSLA-------NLSTTMTGIAIGNNQI 87 (278)
Q Consensus 16 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~-------~~~~~L~~L~l~~~~~ 87 (278)
++..++|+.+++++|.+ ..+ ..+... |++|++++|.++ ..+|..+. ++.. |++|++++|++
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p-------~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~n~l 107 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADL-------GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG-LQELTLENLEV 107 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCC-------HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC-CCEEEEEEEBC
T ss_pred EccCCCceeEeeccccc-ccH-------HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC-ccEEEccCCcc
Confidence 45567899999999998 332 222222 888899999884 35666554 5666 99999999999
Q ss_pred eecCCccc--cccCCcceecccccccchh-----hh-----ccccEEEeecccccccCCCCCCCcccccEEEcccCcccc
Q 038788 88 SCFIPDGI--ANLVNLNALGVEFNQLAVT-----IL-----KSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLG 155 (278)
Q Consensus 88 ~~~~~~~l--~~l~~L~~L~l~~~~l~~~-----~~-----~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 155 (278)
++..|..+ ..+++|++|++++|.++.. .+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+
T Consensus 108 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 98888876 8899999999999998753 24 899999999999997777899999999999999999765
Q ss_pred c--CCcC--ccCCCCCcEEEeecCcCcc--cCC-CCcccccccceeEEccCCcCcccCc-hhhhcCCCCCEEEccCCeec
Q 038788 156 N--IPPS--IGNCKNLILLTTRKNKPSG--TMP-RQLPRIITLSVLLNLSDNLLSGHFP-AEVGKLKNLISLDISSNMFS 227 (278)
Q Consensus 156 ~--~~~~--~~~~~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~~~ 227 (278)
. .+.. +..+++|++|++++|.+++ ..+ ..+..+++| +.|++++|.+++..+ ..+..+++|++|++++|.++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL-QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC-SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC-CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 4 2223 3788999999999999873 122 233456788 999999999997553 45566899999999999998
Q ss_pred ccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCccccc
Q 038788 228 SEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGH 276 (278)
Q Consensus 228 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 276 (278)
..+.... ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 5444333 8999999999999955 55 88999999999999999863
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.8e-29 Score=204.26 Aligned_cols=238 Identities=16% Similarity=0.135 Sum_probs=198.8
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCC
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVN 100 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 100 (278)
.++..+++.+.+... ....+..+++|++|++++|.+++..|..+..+.. |++|++++|++++..+ +..+++
T Consensus 11 ~l~i~~ls~~~l~~~------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~ 81 (317)
T 3o53_A 11 RYKIEKVTDSSLKQA------LASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLST 81 (317)
T ss_dssp EEEEESCCTTTHHHH------HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTT
T ss_pred ceeEeeccccchhhh------HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCC
Confidence 456667777766543 2244566789999999999999666678888887 9999999999987654 889999
Q ss_pred cceecccccccchhh-hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcc
Q 038788 101 LNALGVEFNQLAVTI-LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSG 179 (278)
Q Consensus 101 L~~L~l~~~~l~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 179 (278)
|+.|++++|.++... .++|++|++++|.+++..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 82 L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 82 LRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred CCEEECcCCccccccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 999999999987543 689999999999998654433 5789999999999987667788889999999999999987
Q ss_pred cCCCCcc-cccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCcccc
Q 038788 180 TMPRQLP-RIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLS 258 (278)
Q Consensus 180 ~~~~~~~-~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 258 (278)
..+..+. .+++| +.|++++|.+++. +. ...+++|++|++++|.+++.++.+..+++|+.|++++|++. .+|..+.
T Consensus 159 ~~~~~~~~~l~~L-~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 159 VNFAELAASSDTL-EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp EEGGGGGGGTTTC-CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred ccHHHHhhccCcC-CEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhh
Confidence 7666664 67889 9999999999843 32 23489999999999999987776555999999999999998 5777889
Q ss_pred CCCCCcEEECCCCccc
Q 038788 259 SLKSITELDLSCNNLS 274 (278)
Q Consensus 259 ~~~~L~~L~l~~n~l~ 274 (278)
.+++|++|++++|+++
T Consensus 235 ~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCTTCCEEECTTCCCB
T ss_pred cCCCCCEEEccCCCcc
Confidence 9999999999999987
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-28 Score=214.88 Aligned_cols=235 Identities=18% Similarity=0.148 Sum_probs=180.2
Q ss_pred cCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCcccc
Q 038788 17 GGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIA 96 (278)
Q Consensus 17 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 96 (278)
..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..| +..+.. |++|++++|.+++..
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~-L~~L~Ls~N~l~~l~----- 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISA------ADLAPFTKLELLNLSSNVLYETLD--LESLST-LRTLDLNNNYVQELL----- 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCG------GGGTTCTTCCEEECTTSCCEEEEE--CTTCTT-CCEEECCSSEEEEEE-----
T ss_pred ccCCCccEEEeeCCcCCCCCH------HHHhCCCCCCEEEeeCCCCCCCcc--cccCCC-CCEEEecCCcCCCCC-----
Confidence 344589999999999887543 457888999999999998875544 666766 999999999888543
Q ss_pred ccCCcceecccccccchhh---hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCcc-CCCCCcEEEe
Q 038788 97 NLVNLNALGVEFNQLAVTI---LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIG-NCKNLILLTT 172 (278)
Q Consensus 97 ~l~~L~~L~l~~~~l~~~~---~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l 172 (278)
..++|+.|++++|.++... +++|++|++++|.+++..+..++.+++|++|++++|.+.+..|..+. .+++|+.|++
T Consensus 97 ~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 97 VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 2378899999998886543 67888888888888877777788888888888888888876666665 6888888888
Q ss_pred ecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeec-c
Q 038788 173 RKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFI-G 251 (278)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~-~ 251 (278)
++|.+++..+ ...+++| +.|++++|.+++ ++..+..+++|+.|++++|.+++.++....+++|+.+++++|.+. +
T Consensus 177 s~N~l~~~~~--~~~l~~L-~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 177 QYNFIYDVKG--QVVFAKL-KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCEEEC--CCCCTTC-CEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCCccccccc--cccCCCC-CEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 8888876532 2347777 888888888884 455577888888888888888875555444788888888888876 4
Q ss_pred cCCccccCCCCCcEEECC
Q 038788 252 SIPSTLSSLKSITELDLS 269 (278)
Q Consensus 252 ~~~~~~~~~~~L~~L~l~ 269 (278)
.++.++..++.|+.++++
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 566666777777666654
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=4.6e-27 Score=202.94 Aligned_cols=218 Identities=21% Similarity=0.178 Sum_probs=183.4
Q ss_pred cceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCee
Q 038788 8 FSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQI 87 (278)
Q Consensus 8 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 87 (278)
+.+..+..++++++|++|++++|.+++.+ .+..+++|++|++++|.+++ +| +..+.. |++|++++|++
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~-L~~L~Ls~N~l 97 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDMT--------GIEKLTGLTKLICTSNNITT-LD--LSQNTN-LTYLACDSNKL 97 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCCT--------TGGGCTTCSEEECCSSCCSC-CC--CTTCTT-CSEEECCSSCC
T ss_pred cCcccccChhHcCCCCEEEccCCCcccCh--------hhcccCCCCEEEccCCcCCe-Ec--cccCCC-CCEEECcCCCC
Confidence 34445567888999999999999999752 37889999999999999984 44 777777 99999999999
Q ss_pred eecCCccccccCCcceecccccccchh---hhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCC
Q 038788 88 SCFIPDGIANLVNLNALGVEFNQLAVT---ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNC 164 (278)
Q Consensus 88 ~~~~~~~l~~l~~L~~L~l~~~~l~~~---~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 164 (278)
++. + +..+++|++|++++|+++.. .+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+
T Consensus 98 ~~~-~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l 169 (457)
T 3bz5_A 98 TNL-D--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQ 169 (457)
T ss_dssp SCC-C--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTC
T ss_pred cee-e--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccC
Confidence 864 3 88999999999999988653 378999999999999863 4888999999999999655454 47789
Q ss_pred CCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEc
Q 038788 165 KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCM 244 (278)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l 244 (278)
++|+.|++++|.+++ +| +..++++ +.|++++|.+++. .+..+++|++|++++|++++.+ ...+++|+.|++
T Consensus 170 ~~L~~L~ls~n~l~~-l~--l~~l~~L-~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 170 TQLTTLDCSFNKITE-LD--VSQNKLL-NRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDC 240 (457)
T ss_dssp TTCCEEECCSSCCCC-CC--CTTCTTC-CEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEEC
T ss_pred CcCCEEECCCCccce-ec--cccCCCC-CEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEe
Confidence 999999999999986 44 7788899 9999999999954 3788999999999999999853 344899999999
Q ss_pred cCCeecccCC
Q 038788 245 QDNSFIGSIP 254 (278)
Q Consensus 245 ~~n~~~~~~~ 254 (278)
++|++.+..+
T Consensus 241 ~~N~l~~~~~ 250 (457)
T 3bz5_A 241 SVNPLTELDV 250 (457)
T ss_dssp CSSCCSCCCC
T ss_pred eCCcCCCcCH
Confidence 9999886543
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.1e-26 Score=206.74 Aligned_cols=133 Identities=21% Similarity=0.190 Sum_probs=88.0
Q ss_pred ccccEEEcccCcccccCCcCccCCCCCcEEEeecCcC-cccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEE
Q 038788 141 TMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKP-SGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISL 219 (278)
Q Consensus 141 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L 219 (278)
+.++.++++.|.+....+..+..++.++.+++++|.. ....|..+..+++| +.|++++|++++..|..|..+++|++|
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-CEEECCCCccCCcChHHHcCCCCCCEE
Confidence 3444444445544444444555566677777766653 23456666677777 777777777776666677777777777
Q ss_pred EccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCC-CCCcEEECCCCccc
Q 038788 220 DISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSL-KSITELDLSCNNLS 274 (278)
Q Consensus 220 ~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~ 274 (278)
+|++|++++.++..+. +++|+.|++++|++.+..+..+..+ ++|++|++++|+++
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 7777777776666555 7777777777777776666667666 46777777777764
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=6.7e-28 Score=209.85 Aligned_cols=219 Identities=17% Similarity=0.142 Sum_probs=190.1
Q ss_pred ccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhh-hccccEEEe
Q 038788 46 LTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI-LKSLQMLFL 124 (278)
Q Consensus 46 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~L~~l~l 124 (278)
...+++|++|++++|.+++..|..|..+.. |++|++++|.+++..| +..+++|+.|++++|.++... .++|++|++
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L 106 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHA 106 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEEC
Confidence 344568999999999999777788888887 9999999999987655 889999999999999987543 689999999
Q ss_pred ecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcc-cccccceeEEccCCcCc
Q 038788 125 HENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLP-RIITLSVLLNLSDNLLS 203 (278)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~~L~l~~n~~~ 203 (278)
++|.+++..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+. .+++| +.|++++|.++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCccc
Confidence 99999865443 357899999999999987788889999999999999999987777776 68899 99999999998
Q ss_pred ccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 204 GHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 204 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
+. +. ...+++|+.|++++|.+++.++.+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++
T Consensus 183 ~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred cc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 54 22 33589999999999999988777555999999999999999 47778899999999999999987
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.2e-25 Score=193.94 Aligned_cols=137 Identities=31% Similarity=0.359 Sum_probs=91.7
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCC
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVN 100 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 100 (278)
+|++|++++|++++. + .++++++|++|++++|.++ .+|..+ .+|++|++++|++++ .| .+..+++
T Consensus 132 ~L~~L~L~~n~l~~l-------p-~~~~l~~L~~L~l~~N~l~-~lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~ 196 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKL-------P-ELQNSSFLKIIDVDNNSLK-KLPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPF 196 (454)
T ss_dssp TCCEEECCSSCCSSC-------C-CCTTCTTCCEEECCSSCCS-CCCCCC----TTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred CCCEEECcCCCCCCC-------c-ccCCCCCCCEEECCCCcCc-ccCCCc----ccccEEECcCCcCCc-Cc-cccCCCC
Confidence 444445544444432 2 3677788888888888877 355433 248888888888775 44 5788888
Q ss_pred cceecccccccchh--hhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCc
Q 038788 101 LNALGVEFNQLAVT--ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS 178 (278)
Q Consensus 101 L~~L~l~~~~l~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 178 (278)
|+.|++++|.++.. ..++|++|++++|.+. .++ .++.+++|++|++++|.+.+ +|.. .++|+.|++++|.++
T Consensus 197 L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 197 LTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred CCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 99999988887652 2567888888888887 555 47788888888888887763 3322 244555555555444
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=4.6e-26 Score=196.52 Aligned_cols=248 Identities=24% Similarity=0.261 Sum_probs=150.1
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCC------------ccccccccCCCCccEEEeecccccccCCc
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTND------------LHFITFLTNCTKLGVLVLDANRFGGALPF 68 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~------------~~~~~~l~~~~~L~~L~l~~~~l~~~~~~ 68 (278)
||+++|++++ +| .++++++|++|++++|++++.+... +.....+.++++|++|++++|.++ .+|.
T Consensus 136 L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~-~l~~ 212 (454)
T 1jl5_A 136 LGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPD 212 (454)
T ss_dssp EECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCC
T ss_pred EECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC-cCCC
Confidence 5788999987 77 5999999999999999988753210 000112445555555555555555 2332
Q ss_pred hhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchh--hhccccEEEeecccccccCCCCCCCcccccEE
Q 038788 69 SLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT--ILKSLQMLFLHENILQGTIPCSLGNLTMLTQR 146 (278)
Q Consensus 69 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 146 (278)
.. .+|++|++++|.++ .+| .+..+++|+.|++++|+++.. .+++|++|++++|.+++ ++.. +++|++|
T Consensus 213 ~~----~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L 282 (454)
T 1jl5_A 213 LP----LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPEL---PQSLTFL 282 (454)
T ss_dssp CC----TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred Cc----CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCcc---cCcCCEE
Confidence 21 23666666666655 344 356667777777777766542 24567777777776663 3322 2567777
Q ss_pred EcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccc-cccceeEEccCCcCcccCchhhhcCCCCCEEEccCCe
Q 038788 147 LLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRI-ITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNM 225 (278)
Q Consensus 147 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 225 (278)
++++|.+.+ ++. -.++|+.|++++|.+++ ++ .. +++ +.|++++|.+++ +|.. +++|++|++++|.
T Consensus 283 ~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L-~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 283 DVSENIFSG-LSE---LPPNLYYLNASSNEIRS-LC----DLPPSL-EELNVSNNKLIE-LPAL---PPRLERLIASFNH 348 (454)
T ss_dssp ECCSSCCSE-ESC---CCTTCCEEECCSSCCSE-EC----CCCTTC-CEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred ECcCCccCc-ccC---cCCcCCEEECcCCcCCc-cc----CCcCcC-CEEECCCCcccc-cccc---CCcCCEEECCCCc
Confidence 777776654 221 12567777777777664 22 22 366 888999999884 5543 5889999999999
Q ss_pred ecccCCCccCCCCccEEEccCCeecc--cCCccccCC-------------CCCcEEECCCCcccc--cCC
Q 038788 226 FSSEISTTLGCTSLEYLCMQDNSFIG--SIPSTLSSL-------------KSITELDLSCNNLSG--HIP 278 (278)
Q Consensus 226 ~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~~-------------~~L~~L~l~~n~l~~--~~p 278 (278)
+++.+. .+++|+.|++++|++.+ .+|..++++ ++|++|++++|+++| .+|
T Consensus 349 l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 349 LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred cccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 886544 36899999999999987 677777776 889999999999987 665
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=8.6e-26 Score=200.85 Aligned_cols=238 Identities=23% Similarity=0.203 Sum_probs=163.8
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
||+++|.++ .+|..+. ++|++|++++|+++.++. .+++|++|++++|.++ .+|. .+.. |++|
T Consensus 45 L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----------~l~~L~~L~Ls~N~l~-~lp~---~l~~-L~~L 106 (622)
T 3g06_A 45 LNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----------LPPELRTLEVSGNQLT-SLPV---LPPG-LLEL 106 (622)
T ss_dssp EECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----------CCTTCCEEEECSCCCS-CCCC---CCTT-CCEE
T ss_pred EEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----------cCCCCCEEEcCCCcCC-cCCC---CCCC-CCEE
Confidence 467888888 6777665 688888888888876432 3567888888888777 5555 2333 7777
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchhh--hccccEEEeecccccccCCCCC-----------------CCcc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI--LKSLQMLFLHENILQGTIPCSL-----------------GNLT 141 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~L~~l~l~~~~~~~~~~~~~-----------------~~~~ 141 (278)
++++|++++. |. .+++|+.|++++|+++... +++|++|++++|.+++ ++..+ ..++
T Consensus 107 ~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~ 181 (622)
T 3g06_A 107 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPS 181 (622)
T ss_dssp EECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCT
T ss_pred ECcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCC
Confidence 7777777643 32 4556666666666654322 4566666666665553 22211 1235
Q ss_pred cccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEc
Q 038788 142 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDI 221 (278)
Q Consensus 142 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 221 (278)
+|+.|++++|.+.+ +|. ..++|+.|++++|.++ .+|.. .++| +.|++++|.+++ +| ..+++|+.|++
T Consensus 182 ~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L-~~L~Ls~N~L~~-lp---~~l~~L~~L~L 248 (622)
T 3g06_A 182 GLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGL-KELIVSGNRLTS-LP---VLPSELKELMV 248 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTC-CEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCC-CEEEccCCccCc-CC---CCCCcCcEEEC
Confidence 56666666666552 332 2356666777766665 33332 2567 888999999884 55 45689999999
Q ss_pred cCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 222 SSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 222 ~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
++|.+++.+. .+++|+.|++++|++. .+|..+.++++|+.|++++|++++.+|
T Consensus 249 s~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 249 SGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 9999986544 4689999999999999 788899999999999999999987643
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=7.7e-27 Score=192.20 Aligned_cols=224 Identities=17% Similarity=0.121 Sum_probs=129.3
Q ss_pred CCCccccc-ceecccccc-------CcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhc
Q 038788 1 MNTIRNIF-SGKVSINFG-------GLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLAN 72 (278)
Q Consensus 1 L~l~~n~~-~~~~~~~~~-------~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~ 72 (278)
|++++|.+ .+.+|..+. ++++|++|++++|++++..+..+ ++..+++|++|++++|.+++. |..+..
T Consensus 68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL----LEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS----SSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH----HHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 46677777 345555554 56777777777777765433210 026667777777777777644 666665
Q ss_pred cc----ccccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeecccccccCCC--CCCCcccccEE
Q 038788 73 LS----TTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPC--SLGNLTMLTQR 146 (278)
Q Consensus 73 ~~----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~L 146 (278)
+. ++|++|++++|++++..+..+..+++|+.|++++|++.... ..+. .+..+++|++|
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------~~~~~~~~~~l~~L~~L 206 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER----------------GLISALCPLKFPTLQVL 206 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH----------------HHHHHSCTTSCTTCCEE
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch----------------HHHHHHHhccCCCCCEE
Confidence 51 23777777777777666666777777777777776654320 0111 12445566666
Q ss_pred EcccCcccc--cCC-cCccCCCCCcEEEeecCcCcccCC-CCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEcc
Q 038788 147 LLEVNDLLG--NIP-PSIGNCKNLILLTTRKNKPSGTMP-RQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDIS 222 (278)
Q Consensus 147 ~l~~n~~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 222 (278)
++++|.+.+ ..+ ..+..+++|+.|++++|.+++..| ..+..+++| +.|++++|.++ .+|..+. ++|++|+++
T Consensus 207 ~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL-NSLNLSFTGLK-QVPKGLP--AKLSVLDLS 282 (312)
T ss_dssp ECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC-CEEECTTSCCS-SCCSSCC--SEEEEEECC
T ss_pred ECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC-CEEECCCCccC-hhhhhcc--CCceEEECC
Confidence 666665541 111 122345666666666666655443 233445556 66666666666 4554443 566666776
Q ss_pred CCeecccCCCccCCCCccEEEccCCeec
Q 038788 223 SNMFSSEISTTLGCTSLEYLCMQDNSFI 250 (278)
Q Consensus 223 ~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 250 (278)
+|++++. +....+++|+++++++|+++
T Consensus 283 ~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 283 YNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 6666655 33333666777777766655
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=6.7e-26 Score=183.41 Aligned_cols=225 Identities=17% Similarity=0.149 Sum_probs=160.4
Q ss_pred EEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcce
Q 038788 24 WLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNA 103 (278)
Q Consensus 24 ~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 103 (278)
+.+..+.+++.++. .+. ++|++|++++|.+++..+..+.++.. |++|++++|++++..+..+..+++|+.
T Consensus 11 ~~~c~~~~l~~ip~-------~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (276)
T 2z62_A 11 TYQCMELNFYKIPD-------NLP--FSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLST 80 (276)
T ss_dssp EEECTTSCCSSCCS-------SSC--TTCCEEECTTCCCCEECTTTTTTCTT-CSEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred eEEecCCCccccCC-------CCC--CCccEEECCCCcccccCHhHhccccC-CcEEECCCCcCCccCHHHccCCcCCCE
Confidence 45555555554332 121 46788888888877555556766666 888888888877666666777777766
Q ss_pred ecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCccc-CC
Q 038788 104 LGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGT-MP 182 (278)
Q Consensus 104 L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~ 182 (278)
|++++|.+. +..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++. +|
T Consensus 81 L~L~~n~l~------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~ 142 (276)
T 2z62_A 81 LILTGNPIQ------------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142 (276)
T ss_dssp EECTTCCCC------------------EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred EECCCCccC------------------ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCc
Confidence 666666544 34456677778888888888877755555677788888888888887653 57
Q ss_pred CCcccccccceeEEccCCcCcccCchhhhcCCCCC----EEEccCCeecccCCCccCCCCccEEEccCCeecccCCcccc
Q 038788 183 RQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLI----SLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLS 258 (278)
Q Consensus 183 ~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~----~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 258 (278)
..+..+++| +.|++++|.+++..+..+..+++|+ .+++++|.+++.++..+...+|+.|++++|++.+..+..+.
T Consensus 143 ~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 143 EYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred hhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhc
Confidence 777778888 8888888888765556666666666 78888888887777666656888888888888865555667
Q ss_pred CCCCCcEEECCCCcccccC
Q 038788 259 SLKSITELDLSCNNLSGHI 277 (278)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~ 277 (278)
++++|++|++++|++++..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TCCSCCEEECCSSCBCCCT
T ss_pred ccccccEEEccCCcccccC
Confidence 8888888888888887654
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.5e-29 Score=219.24 Aligned_cols=272 Identities=21% Similarity=0.142 Sum_probs=155.7
Q ss_pred CCCcccccceecccccc-Ccc----cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcc--
Q 038788 1 MNTIRNIFSGKVSINFG-GLQ----NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANL-- 73 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~-~l~----~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-- 73 (278)
||+++|.+.+..+..+. .++ +|++|++++|+++..... .++..+..+++|++|++++|.+++..+..+...
T Consensus 61 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG--VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp EECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH--HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred EeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH--HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 46777777765444432 344 577777777777643211 344566777777777777777654333333321
Q ss_pred --cccccEEEeecCeeeecC----CccccccCCcceecccccccchhh-----------hccccEEEeeccccccc----
Q 038788 74 --STTMTGIAIGNNQISCFI----PDGIANLVNLNALGVEFNQLAVTI-----------LKSLQMLFLHENILQGT---- 132 (278)
Q Consensus 74 --~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~l~~~~-----------~~~L~~l~l~~~~~~~~---- 132 (278)
..+|++|++++|+++... +..+..+++|+.|++++|.+.... .++|++|++++|.+++.
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 123777777777666432 333445566666666666654322 12566666666655432
Q ss_pred CCCCCCCcccccEEEcccCccccc---------------------------------CCcCccCCCCCcEEEeecCcCcc
Q 038788 133 IPCSLGNLTMLTQRLLEVNDLLGN---------------------------------IPPSIGNCKNLILLTTRKNKPSG 179 (278)
Q Consensus 133 ~~~~~~~~~~L~~L~l~~n~~~~~---------------------------------~~~~~~~~~~L~~L~l~~~~~~~ 179 (278)
++..+..+++|++|++++|.+... ++..+..+++|++|++++|.+++
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 223333445555555555544321 22233334555555555555443
Q ss_pred cCCCCccc-----ccccceeEEccCCcCccc----CchhhhcCCCCCEEEccCCeecccCCCcc----C--CCCccEEEc
Q 038788 180 TMPRQLPR-----IITLSVLLNLSDNLLSGH----FPAEVGKLKNLISLDISSNMFSSEISTTL----G--CTSLEYLCM 244 (278)
Q Consensus 180 ~~~~~~~~-----~~~L~~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~----~--~~~L~~l~l 244 (278)
..+..+.. .+++ +.|++++|.+++. ++..+..+++|++|++++|.+++..+..+ . .++|++|++
T Consensus 299 ~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 22222211 1355 6666666666643 34455566888888888887765432221 1 568888888
Q ss_pred cCCeecc----cCCccccCCCCCcEEECCCCcccc
Q 038788 245 QDNSFIG----SIPSTLSSLKSITELDLSCNNLSG 275 (278)
Q Consensus 245 ~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~ 275 (278)
++|++++ .++..+..+++|++|++++|++++
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 8888875 566677778888888888888865
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=4.4e-29 Score=216.23 Aligned_cols=273 Identities=18% Similarity=0.130 Sum_probs=160.4
Q ss_pred CCCcccccceecccc-ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccc----
Q 038788 1 MNTIRNIFSGKVSIN-FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLST---- 75 (278)
Q Consensus 1 L~l~~n~~~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~---- 75 (278)
||+++|+++...... +..+++|++|++++|+++..... .++..+..+++|++|++++|.+++..+..+.....
T Consensus 8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 85 (461)
T 1z7x_W 8 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK--DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85 (461)
T ss_dssp EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH--HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred hhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH--HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence 467777776644333 66777777777777777643211 23455666777777777777766433333333222
Q ss_pred cccEEEeecCeeee----cCCccccccCCcceecccccccchhh-----------hccccEEEeecccccccC----CCC
Q 038788 76 TMTGIAIGNNQISC----FIPDGIANLVNLNALGVEFNQLAVTI-----------LKSLQMLFLHENILQGTI----PCS 136 (278)
Q Consensus 76 ~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~~~-----------~~~L~~l~l~~~~~~~~~----~~~ 136 (278)
+|++|++++|+++. .++..+..+++|+.|++++|.+.... .++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 47777777777663 23555666777777777777765322 124666666666655421 223
Q ss_pred CCCcccccEEEcccCccccc---------------------------------CCcCccCCCCCcEEEeecCcCcccC--
Q 038788 137 LGNLTMLTQRLLEVNDLLGN---------------------------------IPPSIGNCKNLILLTTRKNKPSGTM-- 181 (278)
Q Consensus 137 ~~~~~~L~~L~l~~n~~~~~---------------------------------~~~~~~~~~~L~~L~l~~~~~~~~~-- 181 (278)
+..+++|++|++++|.+... ++..+..+++|+.|++++|.+++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 33345555555555544322 1223334556666666666554321
Q ss_pred ---CCCcccccccceeEEccCCcCccc----CchhhhcCCCCCEEEccCCeecccCCCccC------CCCccEEEccCCe
Q 038788 182 ---PRQLPRIITLSVLLNLSDNLLSGH----FPAEVGKLKNLISLDISSNMFSSEISTTLG------CTSLEYLCMQDNS 248 (278)
Q Consensus 182 ---~~~~~~~~~L~~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~------~~~L~~l~l~~n~ 248 (278)
+.....++++ +.|++++|.+++. ++..+..+++|++|++++|.+++.....+. .++|++|++++|.
T Consensus 246 ~l~~~~~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSSRL-RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCC-CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCCc-eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 1111234556 6777777776632 455566677778888877777643222221 3578888888887
Q ss_pred eccc----CCccccCCCCCcEEECCCCccccc
Q 038788 249 FIGS----IPSTLSSLKSITELDLSCNNLSGH 276 (278)
Q Consensus 249 ~~~~----~~~~~~~~~~L~~L~l~~n~l~~~ 276 (278)
+++. ++..+..+++|++|++++|++++.
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 7754 445566778888888888888653
No 69
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.93 E-value=2.2e-27 Score=199.41 Aligned_cols=221 Identities=19% Similarity=0.149 Sum_probs=140.0
Q ss_pred CCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCC-CccEEEeecccccccCCchhhcc----ccc
Q 038788 2 NTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCT-KLGVLVLDANRFGGALPFSLANL----STT 76 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~----~~~ 76 (278)
++++|.++|.+|..+...++|++|++++|.+++..+. .+.+.+..++ +|++|++++|.+++..+..+... .++
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTV--ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHH--HHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 6889999999998888888899999999999876442 3446678888 89999999999987777777765 234
Q ss_pred ccEEEeecCeeeecCCccccc----c-CCcceecccccccchhh-----------hccccEEEeecccccccCC----CC
Q 038788 77 MTGIAIGNNQISCFIPDGIAN----L-VNLNALGVEFNQLAVTI-----------LKSLQMLFLHENILQGTIP----CS 136 (278)
Q Consensus 77 L~~L~l~~~~~~~~~~~~l~~----l-~~L~~L~l~~~~l~~~~-----------~~~L~~l~l~~~~~~~~~~----~~ 136 (278)
|++|++++|.+++..+..+.. + ++|+.|++++|.++... ..+|++|++++|.+++... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999988766554433 3 78888888888876432 1367777777776664222 22
Q ss_pred CCCcc-cccEEEcccCcccccCCcC----ccCC-CCCcEEEeecCcCccc----CCCCccc-ccccceeEEccCCcCccc
Q 038788 137 LGNLT-MLTQRLLEVNDLLGNIPPS----IGNC-KNLILLTTRKNKPSGT----MPRQLPR-IITLSVLLNLSDNLLSGH 205 (278)
Q Consensus 137 ~~~~~-~L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~~L~l~~n~~~~~ 205 (278)
+..++ +|++|++++|.+....+.. +..+ ++|+.|++++|.+++. ++..+.. .++| +.|++++|.+++.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L-~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV-VSLNLCLNCLHGP 240 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC-CEEECCSSCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc-eEEECcCCCCCcH
Confidence 23333 5666666666665433222 2233 3566666666655432 1222222 1244 5555555555532
Q ss_pred Cc----hhhhcCCCCCEEEccCCe
Q 038788 206 FP----AEVGKLKNLISLDISSNM 225 (278)
Q Consensus 206 ~~----~~~~~~~~L~~L~L~~n~ 225 (278)
.+ ..+..+++|++|++++|.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHHhcCCCccEEEeccCC
Confidence 22 122334555555555555
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.2e-24 Score=175.58 Aligned_cols=203 Identities=21% Similarity=0.176 Sum_probs=132.2
Q ss_pred ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccc
Q 038788 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGI 95 (278)
Q Consensus 16 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 95 (278)
++++++++++++++++++.+++. + .+++++|++++|.+++..+..+..+.. |++|++++|.+++..+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~-------~--~~~l~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~-- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD-------L--PKDTTILHLSENLLYTFSLATLMPYTR-LTQLNLDRAELTKLQVD-- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC-------C--CTTCCEEECTTSCCSEEEGGGGTTCTT-CCEEECTTSCCCEEECC--
T ss_pred ccccCCccEEECCCCCCCcCCCC-------C--CCCCCEEEcCCCcCCccCHHHhhcCCC-CCEEECCCCccCcccCC--
Confidence 45555666666666665544321 1 135556666666655444445555544 66666666555533221
Q ss_pred cccCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecC
Q 038788 96 ANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKN 175 (278)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 175 (278)
..++ +|++|++++|.+. .++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 74 ~~l~------------------~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 74 GTLP------------------VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp SCCT------------------TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred CCCC------------------cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 3333 4444444455444 45666777888888888888887555566788888888888888
Q ss_pred cCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeec
Q 038788 176 KPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFI 250 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 250 (278)
.+++..+..+..+++| +.|++++|++++..+..+..+++|+.|++++|.++..+...+..++|+.+++++|.+.
T Consensus 135 ~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 135 ELKTLPPGLLTPTPKL-EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCCTTTTTTCTTC-CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCccChhhcccccCC-CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 8876666666777788 8888888888744444567778888888888888766666666778888888888765
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=7.6e-24 Score=170.76 Aligned_cols=180 Identities=20% Similarity=0.217 Sum_probs=110.7
Q ss_pred CccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeeccccc
Q 038788 51 KLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQ 130 (278)
Q Consensus 51 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~ 130 (278)
++++|++++|.++...+..|.++.. |++|++++|+++...+..+..+++|+.|+++ +|.+.
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~------------------~n~l~ 98 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTK-LRLLYLNDNKLQTLPAGIFKELKNLETLWVT------------------DNKLQ 98 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTT-CCEEECCSSCCSCCCTTTTSSCTTCCEEECC------------------SSCCC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCC-CCEEECCCCccCeeChhhhcCCCCCCEEECC------------------CCcCC
Confidence 4555555555555333334444444 5555555555543333333444444444444 34444
Q ss_pred ccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhh
Q 038788 131 GTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV 210 (278)
Q Consensus 131 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~ 210 (278)
...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++| +.|++++|.+.+..+..+
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL-KELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTT
T ss_pred cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc-ceeEecCCcCcEeChhHh
Confidence 3344456667777778887777765555556777777777777777775555556677777 777777777775444556
Q ss_pred hcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeec
Q 038788 211 GKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFI 250 (278)
Q Consensus 211 ~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~ 250 (278)
..+++|++|++++|.+++.++..+. +++|+.+++++|++.
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 6777777777777777766655554 677777777777765
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=5.6e-25 Score=177.59 Aligned_cols=211 Identities=20% Similarity=0.198 Sum_probs=133.6
Q ss_pred ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccc
Q 038788 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGI 95 (278)
Q Consensus 16 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 95 (278)
+..+++|+.|+++++.++... .+..+++|++|++++|.+++ + ..+..+.. |++|++++|.+++..+..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~--------~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~-L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ--------GIQYLPNVRYLALGGNKLHD-I-SALKELTN-LTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT--------TGGGCTTCCEEECTTSCCCC-C-GGGTTCTT-CCEEECTTSCCCCCCTTTT
T ss_pred cccccceeeeeeCCCCccccc--------ccccCCCCcEEECCCCCCCC-c-hhhcCCCC-CCEEECCCCccCccChhHh
Confidence 344566666666666655432 25556666666666666653 2 24555554 6666666666665555445
Q ss_pred cccCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecC
Q 038788 96 ANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKN 175 (278)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 175 (278)
..+++|+.|++++|.+ ++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 106 ~~l~~L~~L~L~~n~l------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 106 DKLTNLKELVLVENQL------------------QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp TTCTTCCEEECTTSCC------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCCEEECCCCcC------------------CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC
Confidence 5555555555554443 3334445667777777777777776544455667777777777777
Q ss_pred cCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCc
Q 038788 176 KPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPS 255 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 255 (278)
.+++..+..+..+++| +.|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++|+.+++..|.+.+.+|.
T Consensus 168 ~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 168 QLQSLPEGVFDKLTQL-KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBC
T ss_pred CcCccCHHHhcCCccC-CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCCcccC
Confidence 7776555556677777 777777777776555556777777777777776542 256677777777777777776
Q ss_pred cccCCCC
Q 038788 256 TLSSLKS 262 (278)
Q Consensus 256 ~~~~~~~ 262 (278)
.++.++.
T Consensus 241 ~~~~~~~ 247 (272)
T 3rfs_A 241 SAGSVAP 247 (272)
T ss_dssp TTSCBCG
T ss_pred cccccCC
Confidence 6665543
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.9e-24 Score=174.80 Aligned_cols=211 Identities=21% Similarity=0.171 Sum_probs=149.1
Q ss_pred ccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecC
Q 038788 12 VSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFI 91 (278)
Q Consensus 12 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 91 (278)
+|..+. ++|++|++++|++++..+ ..+.++++|++|++++|.++...+..+..+.. |++|++++|.+++..
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGS------YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH-LSTLILTGNPIQSLA 92 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECT------TTTTTCTTCSEEECTTCCCCEECTTTTTTCTT-CCEEECTTCCCCEEC
T ss_pred cCCCCC--CCccEEECCCCcccccCH------hHhccccCCcEEECCCCcCCccCHHHccCCcC-CCEEECCCCccCccC
Confidence 555443 479999999999998654 35788999999999999998666667887777 999999999999888
Q ss_pred CccccccCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCccccc-CCcCccCCCCCcEE
Q 038788 92 PDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGN-IPPSIGNCKNLILL 170 (278)
Q Consensus 92 ~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L 170 (278)
+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+... +|..+..+++|+.|
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLAS------------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCC------------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred hhhhcCCccccEEECCCCCccc------------------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 8888888888888888777652 2233456666777777777766542 45666667777777
Q ss_pred EeecCcCcccCCCCcccccccce----eEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEcc
Q 038788 171 TTRKNKPSGTMPRQLPRIITLSV----LLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQ 245 (278)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~L~~----~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~ 245 (278)
++++|.+++..+..+..+..+ + .+++++|.+.+..+..+ ...+|+.|++++|.+++.++..+. +++|+.++++
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L-~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQM-PLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTC-TTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred ECCCCCCCcCCHHHhhhhhhc-cccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 777777665555555555554 4 56777777764333333 334677777777777766555544 6777777777
Q ss_pred CCeecc
Q 038788 246 DNSFIG 251 (278)
Q Consensus 246 ~n~~~~ 251 (278)
+|++.+
T Consensus 233 ~N~~~c 238 (276)
T 2z62_A 233 TNPWDC 238 (276)
T ss_dssp SSCBCC
T ss_pred CCcccc
Confidence 777664
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=4.4e-27 Score=199.29 Aligned_cols=188 Identities=17% Similarity=0.186 Sum_probs=114.0
Q ss_pred ccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccc---ccccCCchh-------hcccccccEEE
Q 038788 12 VSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANR---FGGALPFSL-------ANLSTTMTGIA 81 (278)
Q Consensus 12 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---l~~~~~~~~-------~~~~~~L~~L~ 81 (278)
++..+..+++|++|++++|.++...+. .+...+..+++|++|++++|. +.+.+|..+ ..+.. |++|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~-L~~L~ 100 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAAR--WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK-LHTVR 100 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHH--HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT-CCEEE
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHH--HHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc-ccEEE
Confidence 556677788999999999988875332 344567889999999999874 344555555 45555 99999
Q ss_pred eecCeeee----cCCccccccCCcceecccccccchhh----------h---------ccccEEEeecccccc-cCC---
Q 038788 82 IGNNQISC----FIPDGIANLVNLNALGVEFNQLAVTI----------L---------KSLQMLFLHENILQG-TIP--- 134 (278)
Q Consensus 82 l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~l~~~~----------~---------~~L~~l~l~~~~~~~-~~~--- 134 (278)
+++|.++. .++..+..+++|+.|++++|.+.... + ++|++|++++|.++. .++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99998876 35566788889999999999886332 1 566666666665542 111
Q ss_pred CCCCCcccccEEEcccCccccc-----CCcCccCCCCCcEEEeecCcCc----ccCCCCcccccccceeEEccCCcCc
Q 038788 135 CSLGNLTMLTQRLLEVNDLLGN-----IPPSIGNCKNLILLTTRKNKPS----GTMPRQLPRIITLSVLLNLSDNLLS 203 (278)
Q Consensus 135 ~~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~~L~l~~n~~~ 203 (278)
..+..+++|++|++++|.+... .+..+..+++|+.|++++|.++ ..+|..+..+++| +.|++++|.++
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L-~~L~L~~n~i~ 257 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL-RELGLNDCLLS 257 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC-CEEECTTCCCC
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc-CEEECCCCCCc
Confidence 2333444555555555544311 1113444455555555555443 2233333444444 44444444444
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.4e-24 Score=175.21 Aligned_cols=221 Identities=21% Similarity=0.219 Sum_probs=173.6
Q ss_pred cccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCcccccc
Q 038788 19 LQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANL 98 (278)
Q Consensus 19 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 98 (278)
+.++..+++..+.+.... .+..+++|++|++++|.++ .++ .+..++. |++|++++|.+++. ..+..+
T Consensus 18 ~~~l~~l~l~~~~~~~~~--------~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~-L~~L~l~~n~l~~~--~~l~~l 84 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV--------TQNELNSIDQIIANNSDIK-SVQ-GIQYLPN-VRYLALGGNKLHDI--SALKEL 84 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE--------CHHHHTTCCEEECTTSCCC-CCT-TGGGCTT-CCEEECTTSCCCCC--GGGTTC
T ss_pred HHHHHHHHhcCccccccc--------ccccccceeeeeeCCCCcc-ccc-ccccCCC-CcEEECCCCCCCCc--hhhcCC
Confidence 345556666666666542 2566788888888888876 333 4666666 88888888887642 345555
Q ss_pred CCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCc
Q 038788 99 VNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS 178 (278)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 178 (278)
++|++|++++| .+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 85 ~~L~~L~L~~n------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 85 TNLTYLILTGN------------------QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp TTCCEEECTTS------------------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCC------------------ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC
Confidence 55555555544 444445566788999999999999998666666889999999999999998
Q ss_pred ccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccc
Q 038788 179 GTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTL 257 (278)
Q Consensus 179 ~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~ 257 (278)
+..+..+..+++| +.|++++|.+++..+..+..+++|++|++++|.+++.++..+. +++|+.|++++|.+.
T Consensus 147 ~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------- 218 (272)
T 3rfs_A 147 SLPKGVFDKLTNL-TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------- 218 (272)
T ss_dssp CCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------
T ss_pred ccCHHHhccCccC-CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------
Confidence 7777778899999 9999999999976666788899999999999999988877665 999999999999876
Q ss_pred cCCCCCcEEECCCCcccccCC
Q 038788 258 SSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~~~p 278 (278)
+.++.+++++++.|.++|.+|
T Consensus 219 ~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 219 CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CCTTTTHHHHHHHHHTGGGBB
T ss_pred ccCcHHHHHHHHHHhCCCccc
Confidence 457789999999999999887
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.5e-23 Score=169.30 Aligned_cols=202 Identities=20% Similarity=0.182 Sum_probs=143.7
Q ss_pred ccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEee
Q 038788 46 LTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLH 125 (278)
Q Consensus 46 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~ 125 (278)
+.+++++++++++++.++ .+|..+. ..+++|++++|.+++..+..+..+++|+.|++++|.++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------ 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------ 69 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE------------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc------------
Confidence 556677788888777777 5665543 347788888887776666677777777777777666541
Q ss_pred cccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCccc
Q 038788 126 ENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGH 205 (278)
Q Consensus 126 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~ 205 (278)
++. ...+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..+++| +.|++++|.+++.
T Consensus 70 -------~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 70 -------LQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTL 139 (290)
T ss_dssp -------EEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCC
T ss_pred -------ccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCcc
Confidence 111 145677788888887776 566667777788888888887776666667777777 7788888877755
Q ss_pred CchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 206 FPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 206 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
.+..+..+++|+.|++++|++++.++..+. +++|+.|++++|++. .+|..+...+.|+.+++++|++.
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 555567777888888888877776666655 777888888888777 56666667777888888877764
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=8.4e-23 Score=164.65 Aligned_cols=201 Identities=19% Similarity=0.196 Sum_probs=114.2
Q ss_pred CccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeeccccc
Q 038788 51 KLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQ 130 (278)
Q Consensus 51 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~ 130 (278)
..++++++++.++ .+|..+. .++++|++++|+++...+..+..+++|++|++++|.++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------ 74 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------------------ 74 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS------------------
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC------------------
Confidence 3556666666665 4554332 23666666666666554445555555555555544433
Q ss_pred ccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhh
Q 038788 131 GTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEV 210 (278)
Q Consensus 131 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~ 210 (278)
...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++| +.|++++|.+.+..+..+
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~ 153 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVF 153 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTT
T ss_pred eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHc
Confidence 1222334556666666666666654333445566666666666666665555555566666 666666666664333345
Q ss_pred hcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccc
Q 038788 211 GKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 211 ~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
..+++|++|++++|.+++.++..+. +++|++|++++|++.+..+..+..+++|++|++++|++.
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 5666666666666666655554443 566666666666666444444556666666666666653
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.1e-25 Score=187.14 Aligned_cols=243 Identities=15% Similarity=0.109 Sum_probs=130.1
Q ss_pred CCcccccceeccccccCc--ccccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccccccc-CCchhhccccccc
Q 038788 2 NTIRNIFSGKVSINFGGL--QNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGA-LPFSLANLSTTMT 78 (278)
Q Consensus 2 ~l~~n~~~~~~~~~~~~l--~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~~L~ 78 (278)
|+++|.+. +..+..+ ++++.++++++.+++..+. +..+++|++|++++|.+++. ++..+..++. |+
T Consensus 53 ~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~-L~ 121 (336)
T 2ast_B 53 DLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK-LQ 121 (336)
T ss_dssp ECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-------CCCCBCCCEEECTTCEECHHHHHHHHTTBCC-CS
T ss_pred ccccccCC---HHHHHhhhhccceEEEcCCccccccchh-------hccCCCCCEEEccCCCcCHHHHHHHHhhCCC-CC
Confidence 45555554 2334444 5666666666666654332 33456667777766666543 5555555554 77
Q ss_pred EEEeecCeeeecCCccccccCCcceeccccc-ccchhh-------hccccEEEeecc-ccccc-CCCCCCCcc-cccEEE
Q 038788 79 GIAIGNNQISCFIPDGIANLVNLNALGVEFN-QLAVTI-------LKSLQMLFLHEN-ILQGT-IPCSLGNLT-MLTQRL 147 (278)
Q Consensus 79 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~-------~~~L~~l~l~~~-~~~~~-~~~~~~~~~-~L~~L~ 147 (278)
+|++++|.+++..+..+..+++|+.|++++| .++... +++|++|++++| .+++. ++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 7777666666555555666666777776666 454321 556666666666 55532 333445555 666666
Q ss_pred cccCc--cc-ccCCcCccCCCCCcEEEeecCc-CcccCCCCcccccccceeEEccCCc-CcccCchhhhcCCCCCEEEcc
Q 038788 148 LEVND--LL-GNIPPSIGNCKNLILLTTRKNK-PSGTMPRQLPRIITLSVLLNLSDNL-LSGHFPAEVGKLKNLISLDIS 222 (278)
Q Consensus 148 l~~n~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~~L~l~~n~-~~~~~~~~~~~~~~L~~L~L~ 222 (278)
+++|. +. ..++..+..+++|+.|++++|. +++..+..+..+++| +.|++++|. +.......+..+++|+.|+++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L-~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL-QHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC-CEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC-CEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 66663 22 2233344456666666666665 444455555556666 666666663 222222245556666666666
Q ss_pred CCeecccCCCccCCCCccEEEccCCeecccCCcccc
Q 038788 223 SNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLS 258 (278)
Q Consensus 223 ~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 258 (278)
+| +........ ..++..|++++|++++..|..++
T Consensus 281 ~~-i~~~~~~~l-~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 281 GI-VPDGTLQLL-KEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TS-SCTTCHHHH-HHHSTTSEESCCCSCCTTCSSCS
T ss_pred Cc-cCHHHHHHH-HhhCcceEEecccCccccCCccc
Confidence 66 221110000 12244444566666655554443
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=173.07 Aligned_cols=219 Identities=17% Similarity=0.120 Sum_probs=174.9
Q ss_pred CccEEEeecccccccCCc---hhhcccccccEEEeecCeeeecCCccc--cccCCcceecccccccchh------h----
Q 038788 51 KLGVLVLDANRFGGALPF---SLANLSTTMTGIAIGNNQISCFIPDGI--ANLVNLNALGVEFNQLAVT------I---- 115 (278)
Q Consensus 51 ~L~~L~l~~~~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~l~~~------~---- 115 (278)
.++.+.+.++.++...-. .+..... |++|++++|.+++..|..+ ..+++|+.|++++|.+... .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSR-LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSC-CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCc-eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 578888888877532111 1222344 9999999999998888887 8899999999999998752 1
Q ss_pred hccccEEEeecccccccCCCCCCCcccccEEEcccCccccc--C--CcCccCCCCCcEEEeecCcCcccCCC----Cccc
Q 038788 116 LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGN--I--PPSIGNCKNLILLTTRKNKPSGTMPR----QLPR 187 (278)
Q Consensus 116 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~ 187 (278)
+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. + +..+..+++|++|++++|.++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 78999999999999877778899999999999999987542 2 2334688999999999999862 222 2356
Q ss_pred ccccceeEEccCCcCcccCchhhhcC---CCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCCCc
Q 038788 188 IITLSVLLNLSDNLLSGHFPAEVGKL---KNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSIT 264 (278)
Q Consensus 188 ~~~L~~~L~l~~n~~~~~~~~~~~~~---~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~ 264 (278)
+++| +.|++++|.+.+..|..+..+ ++|++|++++|.++..+... .++|+.|++++|++++. +. +..+++|+
T Consensus 223 l~~L-~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQP-HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCC-SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCC-CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 6888 999999999997767766666 69999999999999554433 38999999999999953 33 67889999
Q ss_pred EEECCCCccccc
Q 038788 265 ELDLSCNNLSGH 276 (278)
Q Consensus 265 ~L~l~~n~l~~~ 276 (278)
+|++++|++++.
T Consensus 298 ~L~L~~N~l~~~ 309 (310)
T 4glp_A 298 NLTLDGNPFLVP 309 (310)
T ss_dssp CEECSSTTTSCC
T ss_pred EEECcCCCCCCC
Confidence 999999999863
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2e-22 Score=159.58 Aligned_cols=194 Identities=15% Similarity=0.165 Sum_probs=104.1
Q ss_pred CccEEEeecccccccCCchhhcccccccEEEeecCe-eeecCCccccccCCcceecccc-cccchhhhccccEEEeeccc
Q 038788 51 KLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQ-ISCFIPDGIANLVNLNALGVEF-NQLAVTILKSLQMLFLHENI 128 (278)
Q Consensus 51 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~~~L~~l~l~~~~ 128 (278)
+|++|++++|.++...+..|..+.. |++|++++|+ ++...+..+..+++|+.|++++ |.++.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~-L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--------------- 95 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPN-ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--------------- 95 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTT-CCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE---------------
T ss_pred cccEEEEeCCcceEECHHHccCCCC-CcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE---------------
Confidence 5677777777766444445555555 7777777775 6655555666666666666655 44431
Q ss_pred ccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCc---EEEeecC-cCcccCCCCcccccccce-eEEccCCcCc
Q 038788 129 LQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLI---LLTTRKN-KPSGTMPRQLPRIITLSV-LLNLSDNLLS 203 (278)
Q Consensus 129 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~~-~L~l~~n~~~ 203 (278)
..+..+..+++|++|++++|.+.+ +|. +..+++|+ .|++++| .+++..+..+..++++ + .+++++|.++
T Consensus 96 ---i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-~~~L~l~~n~l~ 169 (239)
T 2xwt_C 96 ---IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLYNNGFT 169 (239)
T ss_dssp ---ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-EEEEECCSCCCC
T ss_pred ---cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-eeEEEcCCCCCc
Confidence 222344445555555555555442 332 44444444 5555555 5544444445555555 5 5555555555
Q ss_pred ccCch-hhhcCCCCCEEEccCCe-ecccCCCccC-C-CCccEEEccCCeecccCCccccCCCCCcEEECCCC
Q 038788 204 GHFPA-EVGKLKNLISLDISSNM-FSSEISTTLG-C-TSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCN 271 (278)
Q Consensus 204 ~~~~~-~~~~~~~L~~L~L~~n~-~~~~~~~~~~-~-~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 271 (278)
.++. .+.. ++|++|++++|. +++.++..+. + ++|+.+++++|++. .++.. .+++|+.|+++++
T Consensus 170 -~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 -SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred -ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 2222 2222 556666666663 5554444443 5 56666666666655 23322 4556666666654
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.5e-23 Score=170.84 Aligned_cols=193 Identities=22% Similarity=0.299 Sum_probs=124.1
Q ss_pred CcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccc
Q 038788 18 GLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIAN 97 (278)
Q Consensus 18 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 97 (278)
++++|++|++++|.++..+ .+..+++|++|++++|.++ .++. +..+.. |++|++++|++++. ..+..
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--------~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~-L~~L~L~~n~l~~~--~~~~~ 105 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--------GVQYLNNLIGLELKDNQIT-DLAP-LKNLTK-ITELELSGNPLKNV--SAIAG 105 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--------TGGGCTTCCEEECCSSCCC-CCGG-GTTCCS-CCEEECCSCCCSCC--GGGTT
T ss_pred HcCCcCEEEeeCCCccCch--------hhhccCCCCEEEccCCcCC-CChh-HccCCC-CCEEEccCCcCCCc--hhhcC
Confidence 3445555555555554321 1444555555555555554 2222 444444 55555555554432 13334
Q ss_pred cCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcC
Q 038788 98 LVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKP 177 (278)
Q Consensus 98 l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~ 177 (278)
++ +|++|++++|.+++ ++ .+..+++|++|++++|.+.+. +. +..+++|+.|++++|.+
T Consensus 106 l~------------------~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 106 LQ------------------SIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp CT------------------TCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCC
T ss_pred CC------------------CCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcC
Confidence 44 45555555555543 22 377788899999999988643 32 77888999999999988
Q ss_pred cccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecc
Q 038788 178 SGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIG 251 (278)
Q Consensus 178 ~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~ 251 (278)
++..+ +..+++| +.|++++|.+++ ++. +..+++|++|++++|.+++..+ ...+++|+.|++++|++++
T Consensus 164 ~~~~~--l~~l~~L-~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 164 SDLTP--LANLSKL-TTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GTTCTTC-CEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred CCChh--hcCCCCC-CEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 75333 7788888 889999998884 333 7788899999999998887653 3348899999999998874
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.7e-22 Score=159.89 Aligned_cols=188 Identities=17% Similarity=0.202 Sum_probs=154.7
Q ss_pred ccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccc-cchhhhccccEEEeecccccccCCCCCCCc
Q 038788 62 FGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQ-LAVTILKSLQMLFLHENILQGTIPCSLGNL 140 (278)
Q Consensus 62 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 140 (278)
++ .+|. + +.+|++|++++|++++..+..+..+++|+.|++++|+ ++ ...+..+..+
T Consensus 23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------------~i~~~~f~~l 79 (239)
T 2xwt_C 23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------------QLESHSFYNL 79 (239)
T ss_dssp CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------------EECTTTEESC
T ss_pred cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------------eeCHhHcCCC
Confidence 55 6776 3 3359999999999998777778888877777777664 43 2344578889
Q ss_pred ccccEEEccc-CcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccce---eEEccCC-cCcccCchhhhcCCC
Q 038788 141 TMLTQRLLEV-NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSV---LLNLSDN-LLSGHFPAEVGKLKN 215 (278)
Q Consensus 141 ~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~---~L~l~~n-~~~~~~~~~~~~~~~ 215 (278)
++|++|++++ |.+....+..+..+++|++|++++|.+++ +|. +..++++ + .+++++| .+++..+..+..+++
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L-~~L~~L~l~~N~~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYST-DIFFILEITDNPYMTSIPVNAFQGLCN 156 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBC-CSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccc-ccccEEECCCCcchhhcCcccccchhc
Confidence 9999999998 89886666778999999999999999985 665 7777777 7 9999999 888666667889999
Q ss_pred CC-EEEccCCeecccCCCccCCCCccEEEccCCe-ecccCCccccCC-CCCcEEECCCCcccc
Q 038788 216 LI-SLDISSNMFSSEISTTLGCTSLEYLCMQDNS-FIGSIPSTLSSL-KSITELDLSCNNLSG 275 (278)
Q Consensus 216 L~-~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~~-~~L~~L~l~~n~l~~ 275 (278)
|+ .|++++|.++..++..+..++|+.|++++|+ +.+..+..+.++ ++|++|++++|++++
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 99 9999999999776666666899999999995 886666778899 999999999999984
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.1e-24 Score=184.50 Aligned_cols=228 Identities=18% Similarity=0.164 Sum_probs=178.5
Q ss_pred CCCcccccceecc----ccccCcccccEEecCCCCCCCccC---C-CccccccccCCCCccEEEeecccccc----cCCc
Q 038788 1 MNTIRNIFSGKVS----INFGGLQNLSWLNLGKNNLGTWTT---N-DLHFITFLTNCTKLGVLVLDANRFGG----ALPF 68 (278)
Q Consensus 1 L~l~~n~~~~~~~----~~~~~l~~L~~l~l~~~~~~~~~~---~-~~~~~~~l~~~~~L~~L~l~~~~l~~----~~~~ 68 (278)
||+++|.|.+..+ ..+.++++|++|++++|.+..... + ...+...+..+++|++|++++|.+++ .+|.
T Consensus 37 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 116 (386)
T 2ca6_A 37 IVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116 (386)
T ss_dssp EECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH
Confidence 5899999998744 457789999999999986553321 1 11233456889999999999999986 3667
Q ss_pred hhhcccccccEEEeecCeeeecCCcc----cccc---------CCcceecccccccchhh----------hccccEEEee
Q 038788 69 SLANLSTTMTGIAIGNNQISCFIPDG----IANL---------VNLNALGVEFNQLAVTI----------LKSLQMLFLH 125 (278)
Q Consensus 69 ~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~l~~~~----------~~~L~~l~l~ 125 (278)
.+..++. |++|++++|.++...+.. +..+ ++|+.|++++|+++... +++|++|+++
T Consensus 117 ~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 195 (386)
T 2ca6_A 117 FLSKHTP-LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMV 195 (386)
T ss_dssp HHHHCTT-CCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHhCCC-CCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECc
Confidence 7877777 999999999987543333 3344 89999999999986321 6789999999
Q ss_pred cccccc-----cCCCCCCCcccccEEEcccCccc----ccCCcCccCCCCCcEEEeecCcCccc----CCCCcc--cccc
Q 038788 126 ENILQG-----TIPCSLGNLTMLTQRLLEVNDLL----GNIPPSIGNCKNLILLTTRKNKPSGT----MPRQLP--RIIT 190 (278)
Q Consensus 126 ~~~~~~-----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~--~~~~ 190 (278)
+|.++. ..+..+..+++|++|++++|.++ ..++..+..+++|+.|++++|.+++. ++..+. .+++
T Consensus 196 ~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~ 275 (386)
T 2ca6_A 196 QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275 (386)
T ss_dssp SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred CCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC
Confidence 999873 23447888999999999999985 45677788999999999999998765 344443 3778
Q ss_pred cceeEEccCCcCcc----cCchhh-hcCCCCCEEEccCCeecccC
Q 038788 191 LSVLLNLSDNLLSG----HFPAEV-GKLKNLISLDISSNMFSSEI 230 (278)
Q Consensus 191 L~~~L~l~~n~~~~----~~~~~~-~~~~~L~~L~L~~n~~~~~~ 230 (278)
| +.|++++|.+++ .++..+ ..+++|++|++++|.+++..
T Consensus 276 L-~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 276 L-QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp C-CEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred e-EEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8 999999999986 366666 55799999999999988655
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.8e-24 Score=179.86 Aligned_cols=243 Identities=17% Similarity=0.144 Sum_probs=182.2
Q ss_pred cccEEecCCCCCCCccCCCccccccccCC--CCccEEEeecccccccCCchhhcccccccEEEeecCeeeec-CCccccc
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNC--TKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCF-IPDGIAN 97 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~ 97 (278)
.++.++++++.+.. ..+..+ ++++++++++|.+.+..+. +..+.. |++|++++|.+++. .+..+..
T Consensus 48 ~~~~l~l~~~~~~~---------~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~-L~~L~L~~~~l~~~~~~~~~~~ 116 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---------DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFR-VQHMDLSNSVIEVSTLHGILSQ 116 (336)
T ss_dssp TSSEEECTTCBCCH---------HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBC-CCEEECTTCEECHHHHHHHHTT
T ss_pred hheeeccccccCCH---------HHHHhhhhccceEEEcCCccccccchh-hccCCC-CCEEEccCCCcCHHHHHHHHhh
Confidence 37889999887763 224455 7899999999999865554 556666 99999999998755 6777888
Q ss_pred cCCcceecccccccchhh------hccccEEEeecc-ccccc-CCCCCCCcccccEEEcccC-ccccc-CCcCccCCC-C
Q 038788 98 LVNLNALGVEFNQLAVTI------LKSLQMLFLHEN-ILQGT-IPCSLGNLTMLTQRLLEVN-DLLGN-IPPSIGNCK-N 166 (278)
Q Consensus 98 l~~L~~L~l~~~~l~~~~------~~~L~~l~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~ 166 (278)
+++|+.|++++|.++... +++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 999999999999887433 788999999999 56642 4555677899999999999 77643 455567788 9
Q ss_pred CcEEEeecC--cCc-ccCCCCcccccccceeEEccCCc-CcccCchhhhcCCCCCEEEccCCe-ecccCCCccC-CCCcc
Q 038788 167 LILLTTRKN--KPS-GTMPRQLPRIITLSVLLNLSDNL-LSGHFPAEVGKLKNLISLDISSNM-FSSEISTTLG-CTSLE 240 (278)
Q Consensus 167 L~~L~l~~~--~~~-~~~~~~~~~~~~L~~~L~l~~n~-~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~-~~~L~ 240 (278)
|++|++++| .++ +.++..+..+++| +.|++++|. +++..+..+..+++|++|++++|. +.......+. +++|+
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNL-VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTC-SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCC-CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 999999998 454 4456666778888 999999998 676777788889999999999984 3322222233 89999
Q ss_pred EEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 241 YLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 241 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
.|++++| +.......+. ..+..|++++|++++..|
T Consensus 276 ~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 276 TLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp EEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTC
T ss_pred EEeccCc-cCHHHHHHHH--hhCcceEEecccCccccC
Confidence 9999998 4433222222 235555689999998776
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=169.43 Aligned_cols=221 Identities=17% Similarity=0.123 Sum_probs=160.8
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchh--hcccccccEEEeecCeeeecCC----cc
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSL--ANLSTTMTGIAIGNNQISCFIP----DG 94 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~----~~ 94 (278)
.++.+.+.++.++..... .+.. +..+++|++|++++|.+++..|..+ ..+.. |++|++++|.+++..+ ..
T Consensus 65 ~l~~l~l~~~~~~~~~~~--~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLV--GALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLA-LSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCEEEECSCCCBHHHHH--HHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBC-CSSCEEESCCCSSTTSSHHHHH
T ss_pred ceeEEEEeCCcCCHHHHH--HHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCC-CCEEEeecccccchhhhhHHHH
Confidence 467777777776542110 1111 2234668888888888887777776 55555 8888888888876443 23
Q ss_pred ccccCCcceecccccccchhh------hccccEEEeeccccccc----CCCCCCCcccccEEEcccCcccccCCc----C
Q 038788 95 IANLVNLNALGVEFNQLAVTI------LKSLQMLFLHENILQGT----IPCSLGNLTMLTQRLLEVNDLLGNIPP----S 160 (278)
Q Consensus 95 l~~l~~L~~L~l~~~~l~~~~------~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~----~ 160 (278)
+..+++|+.|++++|.+.... +++|++|++++|.+.+. .+..+..+++|++|++++|.+. .++. .
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH
Confidence 456888888888888875432 67888888888876531 2334467889999999999885 2222 2
Q ss_pred ccCCCCCcEEEeecCcCcccCCCCcccc---cccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCC
Q 038788 161 IGNCKNLILLTTRKNKPSGTMPRQLPRI---ITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCT 237 (278)
Q Consensus 161 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 237 (278)
+..+++|++|++++|.+++..|..+..+ ++| +.|++++|.++ .+|..+. ++|++|++++|++++.+ ....++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L-~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~-~~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSAL-NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP-QPDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTC-CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC-CTTSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcC-CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc-hhhhCC
Confidence 4677999999999999987777777666 588 99999999999 6676653 79999999999998753 333489
Q ss_pred CccEEEccCCeecc
Q 038788 238 SLEYLCMQDNSFIG 251 (278)
Q Consensus 238 ~L~~l~l~~n~~~~ 251 (278)
+|+.|++++|++++
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 99999999998764
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1e-21 Score=156.56 Aligned_cols=179 Identities=18% Similarity=0.186 Sum_probs=111.6
Q ss_pred cccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccc
Q 038788 76 TMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLG 155 (278)
Q Consensus 76 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 155 (278)
..++++++++.++ .+|..+. ++++.|++++|.+ .+..+..+..+++|++|++++|.+.+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l------------------~~~~~~~~~~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGL------------------ATLSDATFRGLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCC------------------CCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCc------------------CccCHhHhcCcccCCEEECCCCcCCc
Confidence 3777888888777 3454433 3555555555554 43444456666666666666666665
Q ss_pred cCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC
Q 038788 156 NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG 235 (278)
Q Consensus 156 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 235 (278)
..+..+..+++|+.|++++|.+++..+..+..+++| +.|++++|.+++..+..+..+++|++|++++|.+++.++..+.
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence 555556666666666666666665555556666666 6667776666644444456666677777777766665554443
Q ss_pred -CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccccc
Q 038788 236 -CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGH 276 (278)
Q Consensus 236 -~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 276 (278)
+++|+.|++++|++.+..+..+..+++|++|++++|++++.
T Consensus 153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66677777777766655555566666777777777766543
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=3.4e-21 Score=171.35 Aligned_cols=219 Identities=23% Similarity=0.283 Sum_probs=156.8
Q ss_pred ccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccC
Q 038788 20 QNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLV 99 (278)
Q Consensus 20 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 99 (278)
.++++++++++.++.++. .+. ++|++|++++|.++ .+|. .+ ++|++|++++|+++. +|. .++
T Consensus 40 ~~l~~L~ls~n~L~~lp~-------~l~--~~L~~L~L~~N~l~-~lp~---~l-~~L~~L~Ls~N~l~~-lp~---~l~ 101 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPD-------CLP--AHITTLVIPDNNLT-SLPA---LP-PELRTLEVSGNQLTS-LPV---LPP 101 (622)
T ss_dssp HCCCEEECCSSCCSCCCS-------CCC--TTCSEEEECSCCCS-CCCC---CC-TTCCEEEECSCCCSC-CCC---CCT
T ss_pred CCCcEEEecCCCcCccCh-------hhC--CCCcEEEecCCCCC-CCCC---cC-CCCCEEEcCCCcCCc-CCC---CCC
Confidence 468999999999996543 232 79999999999998 6776 23 449999999999985 444 689
Q ss_pred Ccceecccccccchh--hhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccC--------------
Q 038788 100 NLNALGVEFNQLAVT--ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGN-------------- 163 (278)
Q Consensus 100 ~L~~L~l~~~~l~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-------------- 163 (278)
+|++|++++|.++.. .+++|+.|++++|.++. ++.. +++|++|++++|.+.+ +|..+..
T Consensus 102 ~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 102 GLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp TCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCC
T ss_pred CCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCC
Confidence 999999999988753 37889999999999984 4443 4889999999998864 3322211
Q ss_pred ---CCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCcc
Q 038788 164 ---CKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLE 240 (278)
Q Consensus 164 ---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~ 240 (278)
+++|+.|++++|.+++ +|.. .++| +.|++++|.++ .++. .+++|+.|++++|.+++.+ ..+++|+
T Consensus 177 ~~~~~~L~~L~Ls~N~l~~-l~~~---~~~L-~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~ 244 (622)
T 3g06_A 177 PMLPSGLQELSVSDNQLAS-LPTL---PSEL-YKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---VLPSELK 244 (622)
T ss_dssp CCCCTTCCEEECCSSCCSC-CCCC---CTTC-CEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---CCCTTCC
T ss_pred cccCCCCcEEECCCCCCCC-CCCc---cchh-hEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---CCCCcCc
Confidence 1455555555555542 2322 2344 55566666655 3332 2367888888888887644 2257888
Q ss_pred EEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 241 YLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 241 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
.|++++|++. .+|. .+++|++|++++|+++ .||
T Consensus 245 ~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 245 ELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp EEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCC
T ss_pred EEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCC
Confidence 8999888887 4554 5688999999999888 555
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=3.7e-22 Score=163.84 Aligned_cols=186 Identities=23% Similarity=0.334 Sum_probs=128.6
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
|++++|.++. ++ .++.+++|++|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+.. |++|
T Consensus 46 L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--------~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~-L~~L 112 (308)
T 1h6u_A 46 LSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--------LKNLTKITELELSGNPLKN-VS-AIAGLQS-IKTL 112 (308)
T ss_dssp EECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--------GTTCCSCCEEECCSCCCSC-CG-GGTTCTT-CCEE
T ss_pred EEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--------HccCCCCCEEEccCCcCCC-ch-hhcCCCC-CCEE
Confidence 5788898885 44 68999999999999999987532 7889999999999999984 44 6777777 9999
Q ss_pred EeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcC
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPS 160 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 160 (278)
++++|++++. + .+..+++|+.|++++|.++... .+..+++|++|++++|.+.+ ++.
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~--------------------~l~~l~~L~~L~l~~n~l~~-~~~- 168 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS--------------------PLAGLTNLQYLSIGNAQVSD-LTP- 168 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--------------------GGGGCTTCCEEECCSSCCCC-CGG-
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc--------------------cccCCCCccEEEccCCcCCC-Chh-
Confidence 9999999864 2 3778888888888877765321 14455556666666665542 222
Q ss_pred ccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecc
Q 038788 161 IGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSS 228 (278)
Q Consensus 161 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 228 (278)
+..+++|+.|++++|.+++..+ +..+++| +.|++++|.+.+. + .+..+++|+.|++++|.+++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L-~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNL-IEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTC-CEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEEEC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCC-CEEEccCCccCcc-c-cccCCCCCCEEEccCCeeec
Confidence 5556666666666666553222 4555566 6666666666632 2 25566666666666666654
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=6.5e-21 Score=151.92 Aligned_cols=180 Identities=19% Similarity=0.200 Sum_probs=121.9
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCC
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVN 100 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 100 (278)
..++++++++.++.++.. +. +.+++|++++|.+++..+..+.++.. |++|++++|.+++..+..+..+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~-------~~--~~l~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~ 84 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-------IP--ADTEKLDLQSTGLATLSDATFRGLTK-LTWLNLDYNQLQTLSAGVFDDLTE 84 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-------CC--TTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCeEEecCCCCccccCCC-------CC--CCCCEEEccCCCcCccCHhHhcCccc-CCEEECCCCcCCccCHhHhccCCc
Confidence 456677777766654431 21 46667777777766555555665555 777777777666655555666665
Q ss_pred cceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCccc
Q 038788 101 LNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGT 180 (278)
Q Consensus 101 L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 180 (278)
|+.|++++|.++ +..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.
T Consensus 85 L~~L~L~~n~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 85 LGTLGLANNQLA------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp CCEEECTTSCCC------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCEEECCCCccc------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 555555554443 33445667788888888888888755445567788888888888888765
Q ss_pred CCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeeccc
Q 038788 181 MPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSE 229 (278)
Q Consensus 181 ~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 229 (278)
.+..+..+++| +.|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 147 ~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 147 PAGAFDKLTNL-QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTC-CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHcCcCcCC-CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 56567777888 8888888888855555677778888888888877654
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.8e-23 Score=175.57 Aligned_cols=226 Identities=17% Similarity=0.171 Sum_probs=170.8
Q ss_pred CCCcccccceecc----ccccCcc-cccEEecCCCCCCCccCCCccccccccCC-CCccEEEeecccccccCCchhhcc-
Q 038788 1 MNTIRNIFSGKVS----INFGGLQ-NLSWLNLGKNNLGTWTTNDLHFITFLTNC-TKLGVLVLDANRFGGALPFSLANL- 73 (278)
Q Consensus 1 L~l~~n~~~~~~~----~~~~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~- 73 (278)
||+++|.+++..+ ..+.+++ +|++|++++|++++..+. .+...+... ++|++|++++|.+++..+..++..
T Consensus 27 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 27 LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD--ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH--HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 6899999998777 7788898 999999999999875442 233334444 899999999999987666655543
Q ss_pred ---cccccEEEeecCeeeecCCcccc----c-cCCcceecccccccchhh----------h-ccccEEEeecccccccCC
Q 038788 74 ---STTMTGIAIGNNQISCFIPDGIA----N-LVNLNALGVEFNQLAVTI----------L-KSLQMLFLHENILQGTIP 134 (278)
Q Consensus 74 ---~~~L~~L~l~~~~~~~~~~~~l~----~-l~~L~~L~l~~~~l~~~~----------~-~~L~~l~l~~~~~~~~~~ 134 (278)
.++|++|++++|++++..+..+. . .++|+.|++++|.++..+ . ++|++|++++|.+++..+
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence 23499999999999876554443 3 369999999999997422 2 489999999999986554
Q ss_pred CCC----CCc-ccccEEEcccCccccc----CCcCccC-CCCCcEEEeecCcCcccCC----CCcccccccceeEEccCC
Q 038788 135 CSL----GNL-TMLTQRLLEVNDLLGN----IPPSIGN-CKNLILLTTRKNKPSGTMP----RQLPRIITLSVLLNLSDN 200 (278)
Q Consensus 135 ~~~----~~~-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~~L~l~~n 200 (278)
..+ ... ++|++|++++|.+... ++..+.. .++|+.|++++|.+++..+ ..+..+++| +.|++++|
T Consensus 185 ~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L-~~L~L~~n 263 (362)
T 3goz_A 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL-QTVYLDYD 263 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTC-SEEEEEHH
T ss_pred HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCc-cEEEeccC
Confidence 333 344 5999999999998753 3334444 4699999999999876433 344567788 99999999
Q ss_pred cCccc-------CchhhhcCCCCCEEEccCCeeccc
Q 038788 201 LLSGH-------FPAEVGKLKNLISLDISSNMFSSE 229 (278)
Q Consensus 201 ~~~~~-------~~~~~~~~~~L~~L~L~~n~~~~~ 229 (278)
.+.+. ++..+..+++|+.|++++|.+.+.
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 85522 223456678899999999998764
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1.1e-23 Score=187.72 Aligned_cols=271 Identities=16% Similarity=0.083 Sum_probs=145.0
Q ss_pred CCCccccccee----ccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhccccc
Q 038788 1 MNTIRNIFSGK----VSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTT 76 (278)
Q Consensus 1 L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 76 (278)
||+++|.+++. ++.....+++|++|+++++.+++.... .+...+.++++|++|++++|.+. .+|..+..++.
T Consensus 169 L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~- 244 (592)
T 3ogk_B 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK--DLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAAN- 244 (592)
T ss_dssp EECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH--HHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTT-
T ss_pred EECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH--HHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhH-
Confidence 45666666654 333445566777777777766633221 34445566777888887777665 24444444433
Q ss_pred ccEEEeecCee--------------------------eecCCccccccCCcceecccccccchhh-------hccccEE-
Q 038788 77 MTGIAIGNNQI--------------------------SCFIPDGIANLVNLNALGVEFNQLAVTI-------LKSLQML- 122 (278)
Q Consensus 77 L~~L~l~~~~~--------------------------~~~~~~~l~~l~~L~~L~l~~~~l~~~~-------~~~L~~l- 122 (278)
|++|+++.+.. ....|..+..+++|+.|++++|.++... +++|++|
T Consensus 245 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp CCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred HHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 55555542110 0112223344555555555555543211 3344444
Q ss_pred -----------------------Eeec-----------ccccccCC-CCCCCcccccEEEcccCcccccCCcCccC-CCC
Q 038788 123 -----------------------FLHE-----------NILQGTIP-CSLGNLTMLTQRLLEVNDLLGNIPPSIGN-CKN 166 (278)
Q Consensus 123 -----------------------~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~ 166 (278)
++++ +.+++... .....+++|++|+++.+.+++..+..+.. +++
T Consensus 325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 404 (592)
T 3ogk_B 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404 (592)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence 4441 22221100 01122445555555544444333333332 566
Q ss_pred CcEEEee----cCcCccc-----CCCCcccccccceeEEccCCc--CcccCchhhh-cCCCCCEEEccCCeeccc-CCCc
Q 038788 167 LILLTTR----KNKPSGT-----MPRQLPRIITLSVLLNLSDNL--LSGHFPAEVG-KLKNLISLDISSNMFSSE-ISTT 233 (278)
Q Consensus 167 L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~~L~l~~n~--~~~~~~~~~~-~~~~L~~L~L~~n~~~~~-~~~~ 233 (278)
|+.|+++ .+.+++. ++..+..+++| +.|+++.+. +++.....+. .+++|+.|++++|.+++. .+..
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 483 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCC-CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH
Confidence 6666665 2333321 11223445666 777775432 4433333333 377888888888887753 2223
Q ss_pred cC-CCCccEEEccCCeeccc-CCccccCCCCCcEEECCCCccccc
Q 038788 234 LG-CTSLEYLCMQDNSFIGS-IPSTLSSLKSITELDLSCNNLSGH 276 (278)
Q Consensus 234 ~~-~~~L~~l~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~ 276 (278)
.. +++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 33 78999999999987654 333456789999999999998764
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=3.3e-20 Score=154.94 Aligned_cols=222 Identities=18% Similarity=0.080 Sum_probs=105.9
Q ss_pred ccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCc-hhhcccccccEEEeecCeeeecCCcccccc
Q 038788 20 QNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPF-SLANLSTTMTGIAIGNNQISCFIPDGIANL 98 (278)
Q Consensus 20 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 98 (278)
+++++|++++|+|+.+++ ..|.++++|++|++++|.+...+|. +|.++...++.+.+..|+++...|..+..+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~------~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQK------GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp TTCSEEEEESCCCSEECT------TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred CCCCEEEccCCcCCCcCH------HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence 355666666666654433 2345556666666666655433332 334444422234445555555555555556
Q ss_pred CCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccC-cccccCCcCccCC-CCCcEEEeecCc
Q 038788 99 VNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVN-DLLGNIPPSIGNC-KNLILLTTRKNK 176 (278)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~-~~L~~L~l~~~~ 176 (278)
++|+.|++++|++ ....+..+....++..+++.++ .+....+..+..+ ..++.|++++|.
T Consensus 104 ~~L~~L~l~~n~l------------------~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 104 PNLQYLLISNTGI------------------KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp TTCCEEEEEEECC------------------SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred ccccccccccccc------------------ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 6555555555554 3333333333444455555432 2322222233333 245556666665
Q ss_pred CcccCCCCcccccccceeEEccC-CcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCc
Q 038788 177 PSGTMPRQLPRIITLSVLLNLSD-NLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPS 255 (278)
Q Consensus 177 ~~~~~~~~~~~~~~L~~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~ 255 (278)
++. ++.......++ +.+++.+ |.++..-+..|..+++|++|++++|+++..++.. +.+|+.|...++.-...+|
T Consensus 166 i~~-i~~~~f~~~~L-~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 166 IQE-IHNSAFNGTQL-DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp CCE-ECTTSSTTEEE-EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCCCC-
T ss_pred ccC-CChhhccccch-hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCcCC-
Confidence 553 33333333445 5555543 4444222234555666666666666665544433 2344444444433222343
Q ss_pred cccCCCCCcEEECCC
Q 038788 256 TLSSLKSITELDLSC 270 (278)
Q Consensus 256 ~~~~~~~L~~L~l~~ 270 (278)
.+..+++|+.+++.+
T Consensus 241 ~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 241 TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTTCCSCCEEECSC
T ss_pred CchhCcChhhCcCCC
Confidence 345556666666554
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=7.6e-23 Score=182.41 Aligned_cols=227 Identities=12% Similarity=-0.011 Sum_probs=150.6
Q ss_pred cccccCCCCccEEEeecccccccCC-chhhcccccccEEEeecCeeeecCCccccccCCcceeccc-----------ccc
Q 038788 43 ITFLTNCTKLGVLVLDANRFGGALP-FSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVE-----------FNQ 110 (278)
Q Consensus 43 ~~~l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-----------~~~ 110 (278)
+..+..+++|++|++++|.+++... ..+..++. |++|+++++-.....+.....+++|+.|+++ .+.
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~-L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN-LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT-CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC-CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 3345556667777777766543322 22334444 7777776322121222333567889999999 356
Q ss_pred cchhh-------hccccEEEeecccccccCCCCCCC-cccccEEEcc----cCccccc-----CCcCccCCCCCcEEEee
Q 038788 111 LAVTI-------LKSLQMLFLHENILQGTIPCSLGN-LTMLTQRLLE----VNDLLGN-----IPPSIGNCKNLILLTTR 173 (278)
Q Consensus 111 l~~~~-------~~~L~~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~ 173 (278)
++... +++|++|+++.+.+++.....+.. +++|++|+++ .+.+++. ++..+..+++|+.|+++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 65432 789999999888888765555555 7899999996 4455432 12225568999999997
Q ss_pred cCc--CcccCCCCccc-ccccceeEEccCCcCcc-cCchhhhcCCCCCEEEccCCeecccC-CCccC-CCCccEEEccCC
Q 038788 174 KNK--PSGTMPRQLPR-IITLSVLLNLSDNLLSG-HFPAEVGKLKNLISLDISSNMFSSEI-STTLG-CTSLEYLCMQDN 247 (278)
Q Consensus 174 ~~~--~~~~~~~~~~~-~~~L~~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~~~-~~~L~~l~l~~n 247 (278)
.|. +++..+..+.. +++| +.|++++|.+++ .++..+..+++|++|++++|.+++.. +.... +++|++|++++|
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNV-RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTC-CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred cCCCCccHHHHHHHHHhCccc-eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 644 55443333333 6778 999999999885 34555678899999999999987542 22333 899999999999
Q ss_pred eecccCCccc-cCCCCCcEEECCCC
Q 038788 248 SFIGSIPSTL-SSLKSITELDLSCN 271 (278)
Q Consensus 248 ~~~~~~~~~~-~~~~~L~~L~l~~n 271 (278)
++++.....+ ..+|.+....+..+
T Consensus 524 ~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 524 RASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp BCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCHHHHHHHHHhCCCcEEEEecCc
Confidence 9886533333 56787777666554
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.1e-20 Score=143.07 Aligned_cols=181 Identities=18% Similarity=0.160 Sum_probs=103.6
Q ss_pred cEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeeccccccc
Q 038788 53 GVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGT 132 (278)
Q Consensus 53 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~ 132 (278)
+.++++++.++ .+|..+. .+|++|++++|++++..+..+..+++|+.|++++|++. +.
T Consensus 10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------~~ 67 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ------------------SL 67 (208)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC------------------CC
T ss_pred CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC------------------cc
Confidence 34555555554 4443331 23666666666665444444555555555555544433 12
Q ss_pred CCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhc
Q 038788 133 IPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGK 212 (278)
Q Consensus 133 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~ 212 (278)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++| +.|++++|.+++..+..+..
T Consensus 68 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL-KDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCSCCCTTTTTT
T ss_pred ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC-CEEECCCCccceeCHHHhcc
Confidence 22334555666666666666553333345566666666666666665444455666666 66777777666444444666
Q ss_pred CCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecccCCccccCCCC
Q 038788 213 LKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKS 262 (278)
Q Consensus 213 ~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 262 (278)
+++|++|++++|.+.+ .+++|+.+++..|++.+.+|..++.++.
T Consensus 147 l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 7777777777775442 2566777777777777777776666554
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=7.5e-20 Score=160.99 Aligned_cols=181 Identities=25% Similarity=0.276 Sum_probs=82.7
Q ss_pred CccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhh--hccccEEEeeccc
Q 038788 51 KLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI--LKSLQMLFLHENI 128 (278)
Q Consensus 51 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--~~~L~~l~l~~~~ 128 (278)
+|++|++++|.+++ +|..+. ++|++|++++|+++ .+| ..+++|+.|++++|.++... ..+|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCc
Confidence 67777777777763 665543 33777777777776 344 23455555555555443210 1133444444444
Q ss_pred ccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCch
Q 038788 129 LQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPA 208 (278)
Q Consensus 129 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~ 208 (278)
+++ +|. .+++|++|++++|.+.+ +|. .+++|+.|++++|.+++ +|. +. ++| +.|++++|.++ .+|.
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L-~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESL-EALDVSTNLLE-SLPA 197 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTC-CEEECCSSCCS-SCCC
T ss_pred CCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCC-CEEECcCCCCC-chhh
Confidence 432 222 34445555555554442 332 23444555555554443 333 22 344 44444444444 3333
Q ss_pred hhhcCCCC-------CEEEccCCeecccCCCccCCCCccEEEccCCeecccCCcc
Q 038788 209 EVGKLKNL-------ISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGSIPST 256 (278)
Q Consensus 209 ~~~~~~~L-------~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~ 256 (278)
+.. +| +.|++++|.++..+...+.+++|+.|++++|++.+.+|..
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 221 33 4444444444433222222444444444444444433333
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.2e-20 Score=144.59 Aligned_cols=153 Identities=24% Similarity=0.207 Sum_probs=126.7
Q ss_pred cccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEc
Q 038788 118 SLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNL 197 (278)
Q Consensus 118 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l 197 (278)
+|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++| +.|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL-KELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC-CEEEc
Confidence 45666666666665555567889999999999999985555567889999999999999986666677889999 99999
Q ss_pred cCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccccc
Q 038788 198 SDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGH 276 (278)
Q Consensus 198 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 276 (278)
++|.+++..+..+..+++|++|++++|.+++.++..+. +++|+.+++++|.+. +.++.|++|+++.|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence 99999966566688899999999999999987776655 899999999999765 4677899999999999998
Q ss_pred CC
Q 038788 277 IP 278 (278)
Q Consensus 277 ~p 278 (278)
+|
T Consensus 181 ip 182 (208)
T 2o6s_A 181 VR 182 (208)
T ss_dssp BB
T ss_pred ee
Confidence 86
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2.8e-19 Score=149.28 Aligned_cols=205 Identities=16% Similarity=0.126 Sum_probs=132.1
Q ss_pred CccEEEeecccccccCC-chhhcccccccEEEeecCeeeecCC-ccccccCCcceecccccccchhhhccccEEEeeccc
Q 038788 51 KLGVLVLDANRFGGALP-FSLANLSTTMTGIAIGNNQISCFIP-DGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENI 128 (278)
Q Consensus 51 ~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~ 128 (278)
++++|++++|+++ .+| .+|.++.. |++|++++|++.+.++ ..|.++++++. .+.+..|.
T Consensus 31 ~l~~L~Ls~N~i~-~i~~~~f~~l~~-L~~L~Ls~N~i~~~i~~~~f~~L~~l~~-----------------~l~~~~N~ 91 (350)
T 4ay9_X 31 NAIELRFVLTKLR-VIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHE-----------------IRIEKANN 91 (350)
T ss_dssp TCSEEEEESCCCS-EECTTSSTTCTT-CCEEEEECCTTCCEECTTSBCSCTTCCE-----------------EEEEEETT
T ss_pred CCCEEEccCCcCC-CcCHHHHcCCCC-CCEEECcCCCCCCccChhHhhcchhhhh-----------------hhcccCCc
Confidence 4555555555555 333 23444444 5555555555433222 23344433322 23445566
Q ss_pred ccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeec-CcCcccCCCCcccccccceeEEccCCcCcccCc
Q 038788 129 LQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK-NKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFP 207 (278)
Q Consensus 129 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~ 207 (278)
+....+..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+...++.|++++|+++. ++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-EC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CC
Confidence 6656677899999999999999999755555566667788888876 456555555666665433889999999994 44
Q ss_pred hhhhcCCCCCEEEccC-CeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcccccCC
Q 038788 208 AEVGKLKNLISLDISS-NMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 208 ~~~~~~~~L~~L~L~~-n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
.......+|+++++++ |.++..++..+. +++|++|++++|+++. +|.. .+.+|+.|.+.++.--+++|
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCC
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCC
Confidence 4444557899999975 677777766666 8999999999999984 4432 34566777766654333444
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=4.5e-20 Score=150.20 Aligned_cols=172 Identities=22% Similarity=0.275 Sum_probs=99.2
Q ss_pred CcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccc
Q 038788 18 GLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIAN 97 (278)
Q Consensus 18 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 97 (278)
++++|+.|++++|.+...+ .+..+++|++|++++|.+++ ++. +..+.. |++|++++|++++. ..+..
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--------~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~-L~~L~l~~n~l~~~--~~l~~ 110 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--------GIQYLPNVTKLFLNGNKLTD-IKP-LANLKN-LGWLFLDENKVKDL--SSLKD 110 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--------TGGGCTTCCEEECCSSCCCC-CGG-GTTCTT-CCEEECCSSCCCCG--GGGTT
T ss_pred hcCcccEEEccCCCcccCh--------hHhcCCCCCEEEccCCccCC-Ccc-cccCCC-CCEEECCCCcCCCC--hhhcc
Confidence 4455555555555555431 14445555555555555552 222 444444 55555555555431 22444
Q ss_pred cCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcC
Q 038788 98 LVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKP 177 (278)
Q Consensus 98 l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~ 177 (278)
+++|+.|+++ +|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 111 l~~L~~L~L~------------------~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 111 LKKLKSLSLE------------------HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp CTTCCEEECT------------------TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred CCCCCEEECC------------------CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 4444444444 4444421 3455667777777777776533 4566777777777777777
Q ss_pred cccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeeccc
Q 038788 178 SGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSE 229 (278)
Q Consensus 178 ~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 229 (278)
++..+ +..+++| +.|++++|.+++ ++ .+..+++|+.|++++|.+...
T Consensus 169 ~~~~~--l~~l~~L-~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 169 SDIVP--LAGLTKL-QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCCGG--GTTCTTC-CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred ccchh--hcCCCcc-CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 65433 6666777 777777777773 33 366777777777777777653
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2.3e-19 Score=159.36 Aligned_cols=174 Identities=21% Similarity=0.261 Sum_probs=106.4
Q ss_pred ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccc
Q 038788 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGI 95 (278)
Q Consensus 16 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 95 (278)
+..+++|+.|++++|.+...+ .+..+++|++|++++|.+++. +. +..+.. |++|++++|.+++. ..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--------~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~-L~~L~Ls~N~l~~l--~~l 105 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--------GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKN-LGWLFLDENKIKDL--SSL 105 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--------TGGGCTTCCEEECTTSCCCCC-GG-GGGCTT-CCEEECCSSCCCCC--TTS
T ss_pred hhcCCCCCEEECcCCCCCCCh--------HHccCCCCCEEEeeCCCCCCC-hh-hccCCC-CCEEECcCCCCCCC--hhh
Confidence 345667777777777776542 266677777777777777633 32 555655 77777777776642 255
Q ss_pred cccCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecC
Q 038788 96 ANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKN 175 (278)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~ 175 (278)
..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l--------------------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDI--------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp TTCTTCCEEECTTSCCCCC--------------------GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred ccCCCCCEEEecCCCCCCC--------------------ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 6666666666666655421 2345556666666666665532 34556666666666666
Q ss_pred cCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeeccc
Q 038788 176 KPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSE 229 (278)
Q Consensus 176 ~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 229 (278)
.+.+..| +..+++| +.|++++|.+++ + ..+..+++|+.|+|++|.+.+.
T Consensus 164 ~l~~~~~--l~~l~~L-~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 164 QISDIVP--LAGLTKL-QNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCCCGG--GTTCTTC-CEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCchh--hccCCCC-CEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence 6654433 5566666 666666666663 2 3456666666677666666553
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.1e-19 Score=159.91 Aligned_cols=184 Identities=24% Similarity=0.336 Sum_probs=147.8
Q ss_pred cccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCC
Q 038788 21 NLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVN 100 (278)
Q Consensus 21 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 100 (278)
+|+.|++++|++++++.. + .++|++|++++|.++ .+| . .+ ++|++|++++|++++ +|. +.. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~-------l--~~~L~~L~Ls~N~l~-~ip-~--~l-~~L~~L~Ls~N~l~~-ip~-l~~--~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN-------L--PPQITVLEITQNALI-SLP-E--LP-ASLEYLDACDNRLST-LPE-LPA--S 121 (571)
T ss_dssp TCSEEECCSSCCSCCCSC-------C--CTTCSEEECCSSCCS-CCC-C--CC-TTCCEEECCSSCCSC-CCC-CCT--T
T ss_pred CccEEEeCCCCCCccCHh-------H--cCCCCEEECcCCCCc-ccc-c--cc-CCCCEEEccCCCCCC-cch-hhc--C
Confidence 899999999999885442 2 268999999999998 777 2 23 449999999999986 555 554 9
Q ss_pred cceecccccccchh--hhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCc
Q 038788 101 LNALGVEFNQLAVT--ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS 178 (278)
Q Consensus 101 L~~L~l~~~~l~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 178 (278)
|+.|++++|.++.. .+++|+.|++++|.+++ ++. .+++|++|++++|.+.+ +|. +. ++|+.|++++|.++
T Consensus 122 L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 99999999988652 36789999999999985 554 57899999999999985 666 55 89999999999998
Q ss_pred ccCCCCccc-c----cccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCcc
Q 038788 179 GTMPRQLPR-I----ITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTL 234 (278)
Q Consensus 179 ~~~~~~~~~-~----~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 234 (278)
.+|. +.. + +.+ +.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+
T Consensus 194 -~lp~-~~~~L~~~~~~L-~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 194 -SLPA-VPVRNHHSEETE-IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp -SCCC-CC--------CC-EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred -chhh-HHHhhhcccccc-eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 5665 433 1 233 78999999999 688888889999999999999987655443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=5.1e-19 Score=135.74 Aligned_cols=157 Identities=14% Similarity=0.138 Sum_probs=129.2
Q ss_pred chhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCccccccc
Q 038788 112 AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITL 191 (278)
Q Consensus 112 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 191 (278)
+...+++|+++++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 3344778888888888887 445 6888999999999999664 33578889999999999999988788889999999
Q ss_pred ceeEEccCCcCcccCchhhhcCCCCCEEEccCCe-ecccCCCccCCCCccEEEccCCeecccCCccccCCCCCcEEECCC
Q 038788 192 SVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNM-FSSEISTTLGCTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSC 270 (278)
Q Consensus 192 ~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 270 (278)
+.|++++|.+++..+..+..+++|++|++++|. ++.. +....+++|+.|++++|++.+ ++ .+.++++|++|++++
T Consensus 115 -~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 -TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp -CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred -CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 999999999997788889999999999999998 6644 444449999999999999985 44 788999999999999
Q ss_pred Cccccc
Q 038788 271 NNLSGH 276 (278)
Q Consensus 271 n~l~~~ 276 (278)
|++.++
T Consensus 191 N~i~~~ 196 (197)
T 4ezg_A 191 QTIGGK 196 (197)
T ss_dssp C-----
T ss_pred cccCCc
Confidence 999764
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=8.8e-20 Score=162.06 Aligned_cols=193 Identities=23% Similarity=0.276 Sum_probs=151.1
Q ss_pred cccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCcccccc
Q 038788 19 LQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANL 98 (278)
Q Consensus 19 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 98 (278)
+.++..+.+..+.+....+ +..+++|++|++++|.+. .++ .+..+.. |++|++++|++++..+ +..+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--------~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~-L~~L~Ls~N~l~~~~~--l~~l 86 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--------QNELNSIDQIIANNSDIK-SVQ-GIQYLPN-VTKLFLNGNKLTDIKP--LTNL 86 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--------HHHHTTCCCCBCTTCCCC-CCT-TGGGCTT-CCEEECTTSCCCCCGG--GGGC
T ss_pred HHHHHHHhccCCCcccccc--------hhcCCCCCEEECcCCCCC-CCh-HHccCCC-CCEEEeeCCCCCCChh--hccC
Confidence 4456667777777776432 567788999999999887 454 5777766 9999999998876543 6777
Q ss_pred CCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCc
Q 038788 99 VNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS 178 (278)
Q Consensus 99 ~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~ 178 (278)
++|+.|++++|.+.. + ..+..+++|++|++++|.+.. + +.+..+++|+.|++++|.++
T Consensus 87 ~~L~~L~Ls~N~l~~-------------------l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 87 KNLGWLFLDENKIKD-------------------L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp TTCCEEECCSSCCCC-------------------C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred CCCCEEECcCCCCCC-------------------C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccC
Confidence 777777777666541 2 367889999999999999874 3 46888999999999999987
Q ss_pred ccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeeccc
Q 038788 179 GTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIGS 252 (278)
Q Consensus 179 ~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~ 252 (278)
+. ..+..+++| +.|++++|.+.+..+ +..+++|+.|+|++|.+.+. +....+++|+.|++++|++.+.
T Consensus 145 ~l--~~l~~l~~L-~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 145 DI--TVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CC--GGGGSCTTC-SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred Cc--hhhcccCCC-CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence 54 567888999 999999999985444 88899999999999999875 3444489999999999998854
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=136.02 Aligned_cols=153 Identities=17% Similarity=0.148 Sum_probs=114.7
Q ss_pred cEEEeecccccccCCCCCCCcccccEEEcccCcccccCC-cCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEcc
Q 038788 120 QMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIP-PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLS 198 (278)
Q Consensus 120 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~ 198 (278)
+.++++++.++ .+|..+. ..+++|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..+++| +.|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-NEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-CEEECC
Confidence 45666666666 3454443 345788888888775544 346778888888888888877667678888888 888888
Q ss_pred CCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccccc
Q 038788 199 DNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGH 276 (278)
Q Consensus 199 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 276 (278)
+|.+++..+..+..+++|++|++++|.+++..+..+. +++|+.|++++|++.+..+..+..+++|++|++++|++++.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 8888866666678888888888888888877666555 78888888888888876677788888888888888887653
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.2e-18 Score=135.87 Aligned_cols=131 Identities=21% Similarity=0.198 Sum_probs=60.7
Q ss_pred cccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEc
Q 038788 142 MLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDI 221 (278)
Q Consensus 142 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 221 (278)
.+++|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++| +.|++++|.+++..+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-NSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-CEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 44444444444443333344444445555554444444444444444444 44555555444222223344445555555
Q ss_pred cCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcc
Q 038788 222 SSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNL 273 (278)
Q Consensus 222 ~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 273 (278)
++|.+++..+..+. +++|+.|++++|++.+..+..+..+++|++|++++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55554444433333 44555555555554433333444445555555555544
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.1e-18 Score=135.39 Aligned_cols=133 Identities=21% Similarity=0.241 Sum_probs=75.0
Q ss_pred hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeE
Q 038788 116 LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL 195 (278)
Q Consensus 116 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L 195 (278)
.++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++| +.|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L-~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL-KEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh-CeE
Confidence 3456666666666655445555556666666666666543333344555666666666666554444445555555 666
Q ss_pred EccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeec
Q 038788 196 NLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFI 250 (278)
Q Consensus 196 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~ 250 (278)
++++|.++ .+|..+..+++|++|++++|.+++.++..+. +++|+.+++++|.+.
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66666655 4555555556666666666665554444333 556666666666554
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=6.3e-19 Score=143.41 Aligned_cols=183 Identities=27% Similarity=0.299 Sum_probs=114.7
Q ss_pred EEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhh----hccccEEEeecccc
Q 038788 54 VLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI----LKSLQMLFLHENIL 129 (278)
Q Consensus 54 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----~~~L~~l~l~~~~~ 129 (278)
.+.+....+++.. .+..+.. |++|++++|.++.. ..+..+++|+.|++++|.++... +++|++|++++|.+
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~-L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNS-IDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHT-CCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred HHHhcCCCccccc--chhhcCc-ccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcC
Confidence 3344444444322 2345556 99999999988754 34778888888888888876422 56677777777766
Q ss_pred cccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchh
Q 038788 130 QGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAE 209 (278)
Q Consensus 130 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~ 209 (278)
++ + ..+..+++|++|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++| +.|++++|.+++. +.
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L~L~~N~l~~~-~~- 173 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-DTLSLEDNQISDI-VP- 173 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCCC-GG-
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC-CEEEccCCccccc-hh-
Confidence 63 2 236666677777777776653 2 3456666777777777666543 345566666 6667777766633 22
Q ss_pred hhcCCCCCEEEccCCeecccCCCccCCCCccEEEccCCeecc
Q 038788 210 VGKLKNLISLDISSNMFSSEISTTLGCTSLEYLCMQDNSFIG 251 (278)
Q Consensus 210 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~~ 251 (278)
+..+++|+.|++++|.+++.. ....+++|+.|++++|++..
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccC
Confidence 566666777777776666532 22236666777776666653
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.3e-20 Score=166.38 Aligned_cols=204 Identities=20% Similarity=0.167 Sum_probs=130.9
Q ss_pred ccCCCCccEEEeecccccccCCchhhcccccccEEEeecCe-------------eeecCCccccccCCcceec-cccccc
Q 038788 46 LTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQ-------------ISCFIPDGIANLVNLNALG-VEFNQL 111 (278)
Q Consensus 46 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~l 111 (278)
+..++.|+.|++++|.++ .+|..++.+.. |++|++++|. ..+..|..+..+++|+.|+ ++.|.+
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 466888999999999987 88889988888 9988886653 2334556667777787777 555543
Q ss_pred chhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCccccccc
Q 038788 112 AVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITL 191 (278)
Q Consensus 112 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 191 (278)
. .|..+.+..|.++...+ ..|+.|++++|.+.+ +|. +..+++|+.|++++|.++ .+|..+..+++|
T Consensus 423 ~-----~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 488 (567)
T 1dce_A 423 D-----DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488 (567)
T ss_dssp H-----HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred c-----hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC
Confidence 2 33333344444432111 135666666666653 443 666667777777777666 566666666777
Q ss_pred ceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccC-CCccC-CCCccEEEccCCeecccCCc---cccCCCCCcEE
Q 038788 192 SVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEI-STTLG-CTSLEYLCMQDNSFIGSIPS---TLSSLKSITEL 266 (278)
Q Consensus 192 ~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~~~-~~~L~~l~l~~n~~~~~~~~---~~~~~~~L~~L 266 (278)
+.|++++|.+++ +| .+..+++|+.|++++|.+++.. +..+. +++|+.|++++|.+.+..+. .+..+|+|+.|
T Consensus 489 -~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 489 -EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp -CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred -CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 777777777763 45 6666777777777777777653 44443 77777777777777654332 12346777777
Q ss_pred EC
Q 038788 267 DL 268 (278)
Q Consensus 267 ~l 268 (278)
++
T Consensus 566 ~l 567 (567)
T 1dce_A 566 LT 567 (567)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=9.3e-19 Score=146.76 Aligned_cols=176 Identities=19% Similarity=0.103 Sum_probs=112.5
Q ss_pred ccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeecccccccCCCCCC-CcccccEEEcccCcccc
Q 038788 77 MTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLG-NLTMLTQRLLEVNDLLG 155 (278)
Q Consensus 77 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~ 155 (278)
-+.++++++.++. +|..+. +.++.|++++|. +++..+..+. .+++|++|++++|.+..
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~------------------l~~l~~~~~~~~l~~L~~L~L~~N~i~~ 78 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNN------------------LSRLRAEWTPTRLTNLHSLLLSHNHLNF 78 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSC------------------CCEECTTSSSSCCTTCCEEECCSSCCCE
T ss_pred CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCC------------------CCccChhhhhhcccccCEEECCCCcCCc
Confidence 4577888877774 454432 235555555554 4434444555 66777777777777765
Q ss_pred cCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCcc-
Q 038788 156 NIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTL- 234 (278)
Q Consensus 156 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~- 234 (278)
..+..|..+++|++|++++|.++...+..+..+++| +.|++++|.+.+..+..+..+++|+.|+|++|.+++.+...+
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 79 ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL-EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC-CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 555566777777777777777766555566667777 777777777775556666777777777777777776555443
Q ss_pred ---CCCCccEEEccCCeecccCCccccCCCC--CcEEECCCCccc
Q 038788 235 ---GCTSLEYLCMQDNSFIGSIPSTLSSLKS--ITELDLSCNNLS 274 (278)
Q Consensus 235 ---~~~~L~~l~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~l~ 274 (278)
.+++|+.|++++|++....+..+..++. ++.|++++|++.
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 2677777777777777444445566665 366777777654
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=5.7e-21 Score=170.33 Aligned_cols=87 Identities=24% Similarity=0.216 Sum_probs=56.5
Q ss_pred ccccccceeEEccCCcCcccCchhhhc-CCCCCEEEccCCeecccCCCcc-C-CCCccEEEccCCeecccCCc-cccCCC
Q 038788 186 PRIITLSVLLNLSDNLLSGHFPAEVGK-LKNLISLDISSNMFSSEISTTL-G-CTSLEYLCMQDNSFIGSIPS-TLSSLK 261 (278)
Q Consensus 186 ~~~~~L~~~L~l~~n~~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~-~-~~~L~~l~l~~n~~~~~~~~-~~~~~~ 261 (278)
..+++| +.|++++ .+++.....+.. +++|+.|++++|.+++...... . +++|+.|++++|.+++.... ....++
T Consensus 429 ~~~~~L-~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 429 EHCKDL-RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHCTTC-CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred hhCCCc-cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 345566 7777765 444333344443 6778888888887765433332 2 78888888888887543332 345578
Q ss_pred CCcEEECCCCccc
Q 038788 262 SITELDLSCNNLS 274 (278)
Q Consensus 262 ~L~~L~l~~n~l~ 274 (278)
+|++|++++|+++
T Consensus 507 ~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 507 TMRSLWMSSCSVS 519 (594)
T ss_dssp GSSEEEEESSCCB
T ss_pred CCCEEeeeCCCCC
Confidence 8888888888875
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5.5e-18 Score=142.04 Aligned_cols=176 Identities=19% Similarity=0.179 Sum_probs=107.1
Q ss_pred cEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhh-cccccccEEEeecCeeeecCCccccccCCc
Q 038788 23 SWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLA-NLSTTMTGIAIGNNQISCFIPDGIANLVNL 101 (278)
Q Consensus 23 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 101 (278)
+++++++++++.++.. + .+.+++|++++|.++...+..+. .+.. |++|++++|++++..+..+..+++|
T Consensus 21 ~~l~c~~~~l~~iP~~-------~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~-L~~L~L~~N~i~~i~~~~~~~l~~L 90 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-------L--PSYTALLDLSHNNLSRLRAEWTPTRLTN-LHSLLLSHNHLNFISSEAFVPVPNL 90 (361)
T ss_dssp TEEECCSSCCSSCCSS-------C--CTTCSEEECCSSCCCEECTTSSSSCCTT-CCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEEEeCCCCcCccCcc-------C--CCCCCEEECCCCCCCccChhhhhhcccc-cCEEECCCCcCCccChhhccCCCCC
Confidence 4566666655554321 1 12355666666666533333343 3444 6666666666655555555555555
Q ss_pred ceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccC
Q 038788 102 NALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTM 181 (278)
Q Consensus 102 ~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 181 (278)
+.|++++|+ +....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+++..
T Consensus 91 ~~L~Ls~N~------------------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 91 RYLDLSSNH------------------LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp CEEECCSSC------------------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CEEECCCCc------------------CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 555554444 33344456777888888888888887666677788888888888888877433
Q ss_pred CCCc---ccccccceeEEccCCcCcccCchhhhcCCC--CCEEEccCCeec
Q 038788 182 PRQL---PRIITLSVLLNLSDNLLSGHFPAEVGKLKN--LISLDISSNMFS 227 (278)
Q Consensus 182 ~~~~---~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~--L~~L~L~~n~~~ 227 (278)
+..+ ..+++| +.|++++|.+++..+..+..++. ++.|++++|.+.
T Consensus 153 ~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKL-MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTC-CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcC-CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3333 456777 78888888887444455666665 367888887765
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.3e-17 Score=129.98 Aligned_cols=132 Identities=20% Similarity=0.175 Sum_probs=64.8
Q ss_pred ccEEEeecccccccCC-chhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeeccccc
Q 038788 52 LGVLVLDANRFGGALP-FSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQ 130 (278)
Q Consensus 52 L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~ 130 (278)
+++|++++|.+++..+ ..|..+.. |++|++++|++++..+..+..+++|+.|++++|.++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~------------------ 94 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQ-LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE------------------ 94 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred CCEEEcCCCcCCccCchhhhccCCC-CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC------------------
Confidence 3455555555543322 22333333 555555555554444444444444444443333322
Q ss_pred ccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCc
Q 038788 131 GTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLS 203 (278)
Q Consensus 131 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~ 203 (278)
+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++| +.+++++|.+.
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~ 166 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL-STLNLLANPFN 166 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC-CEEECCSCCEE
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC-CEEEecCcCCc
Confidence 2223345555556666666665554445555555555555555555555445555555555 55555555554
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.3e-18 Score=137.95 Aligned_cols=170 Identities=24% Similarity=0.314 Sum_probs=98.4
Q ss_pred CcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccc
Q 038788 18 GLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIAN 97 (278)
Q Consensus 18 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 97 (278)
.+.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+.. |++|++++|++++..+ +..
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--------~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~-L~~L~L~~N~i~~~~~--l~~ 83 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--------SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTN-LKELHLSHNQISDLSP--LKD 83 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--------CHHHHTTCSEEECTTSCCC-CCT-TGGGCTT-CCEEECCSSCCCCCGG--GTT
T ss_pred HHHHHHHHHhcCCCccccc--------chhhcCcCcEEECcCCCcc-cch-HHhhCCC-CCEEECCCCccCCChh--hcc
Confidence 4666777888888877643 2667788888888888887 555 5666666 8888888888875443 777
Q ss_pred cCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcC
Q 038788 98 LVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKP 177 (278)
Q Consensus 98 l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~ 177 (278)
+++|+.|++++|+++.. +. +.. ++|++|++++|.+.+ + +.+..+++|+.|++++|.+
T Consensus 84 l~~L~~L~L~~N~l~~l-------------------~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 84 LTKLEELSVNRNRLKNL-------------------NG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp CSSCCEEECCSSCCSCC-------------------TT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCC
T ss_pred CCCCCEEECCCCccCCc-------------------Cc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcC
Confidence 77777777777776531 11 111 444444444444432 1 2344444555555555444
Q ss_pred cccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecc
Q 038788 178 SGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSS 228 (278)
Q Consensus 178 ~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 228 (278)
++. + .+..+++| +.|++++|.+++. ..+..+++|+.|++++|.+..
T Consensus 141 ~~~-~-~l~~l~~L-~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 141 KSI-V-MLGFLSKL-EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CBC-G-GGGGCTTC-CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCC-h-HHccCCCC-CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 432 1 34444444 5555555555432 334445555555555555443
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=6.7e-18 Score=129.46 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=44.0
Q ss_pred cccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCc-CcccCchhhhcCCCCCE
Q 038788 140 LTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNL-LSGHFPAEVGKLKNLIS 218 (278)
Q Consensus 140 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~-~~~~~~~~~~~~~~L~~ 218 (278)
+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++| +.|++++|. ++ .++ .+..+++|+.
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L-~~L~L~~n~~i~-~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV-NSIDLSYNGAIT-DIM-PLKTLPELKS 163 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC-CEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC-CEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence 3333333333333333233333344444444444444433333333344444 444444443 33 222 3444555555
Q ss_pred EEccCCeecccCCCccCCCCccEEEccCCeec
Q 038788 219 LDISSNMFSSEISTTLGCTSLEYLCMQDNSFI 250 (278)
Q Consensus 219 L~L~~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 250 (278)
|++++|.+++.. ....+++|+.|++++|++.
T Consensus 164 L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 164 LNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 555555554322 2222555555555555543
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.9e-17 Score=129.13 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=90.0
Q ss_pred ccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCccccc
Q 038788 77 MTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGN 156 (278)
Q Consensus 77 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 156 (278)
-+.++++++.++. +|..+. ++++.|++++|.+ .+..+..+..+++|++|++++|.+.+.
T Consensus 13 ~~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i------------------~~i~~~~~~~l~~L~~L~Ls~N~i~~~ 71 (220)
T 2v9t_B 13 NNIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTI------------------KVIPPGAFSPYKKLRRIDLSNNQISEL 71 (220)
T ss_dssp TTEEECTTSCCSS-CCSSCC--TTCCEEECCSSCC------------------CEECTTSSTTCTTCCEEECCSSCCCEE
T ss_pred CCEEEcCCCCcCc-CCCccC--cCCCEEECCCCcC------------------CCcCHhHhhCCCCCCEEECCCCcCCCc
Confidence 4567777777763 444332 4555555555554 433344555666666666666666555
Q ss_pred CCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-
Q 038788 157 IPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG- 235 (278)
Q Consensus 157 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~- 235 (278)
.+..|..+++|++|++++|.++...+..+..+++| +.|++++|.+.+..+..+..+++|+.|++++|.+++.++..+.
T Consensus 72 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL-QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC-CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 55566666666666666666654444445556666 6666666666655555566666666666666666655554444
Q ss_pred CCCccEEEccCCeec
Q 038788 236 CTSLEYLCMQDNSFI 250 (278)
Q Consensus 236 ~~~L~~l~l~~n~~~ 250 (278)
+++|+.+++++|++.
T Consensus 151 l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred CCCCCEEEeCCCCcC
Confidence 666666666666654
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=5.9e-18 Score=135.64 Aligned_cols=162 Identities=17% Similarity=0.252 Sum_probs=100.4
Q ss_pred ccEEEeecCeeeecCCccccccCCcceecccccccchh----hhccccEEEeecccccccCCCCCCCcccccEEEcccCc
Q 038788 77 MTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT----ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVND 152 (278)
Q Consensus 77 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~----~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 152 (278)
+..++++++.+++.. .+..+++|+.|++++|.++.. .+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 666677777766432 466777788888877766432 25667777777776664322 6666777777777776
Q ss_pred ccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCC
Q 038788 153 LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEIST 232 (278)
Q Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 232 (278)
+.+ ++. +.. ++|+.|++++|.+++ + +.+..+++| +.|++++|.+++ ++ .+..+++|+.|++++|.+++. ..
T Consensus 97 l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L-~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~ 167 (263)
T 1xeu_A 97 LKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNL-EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GG 167 (263)
T ss_dssp CSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTC-CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred cCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccc-cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HH
Confidence 653 332 222 667777777776654 2 235566666 667777777663 22 456666777777777766654 22
Q ss_pred ccCCCCccEEEccCCeecc
Q 038788 233 TLGCTSLEYLCMQDNSFIG 251 (278)
Q Consensus 233 ~~~~~~L~~l~l~~n~~~~ 251 (278)
...+++|+.|++++|++.+
T Consensus 168 l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp STTCCCCCEEEEEEEEEEC
T ss_pred hccCCCCCEEeCCCCcccC
Confidence 2236667777777766654
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.3e-20 Score=168.08 Aligned_cols=221 Identities=14% Similarity=0.052 Sum_probs=117.8
Q ss_pred CCCCccEEEeecccccccCCch-hhcccccccEEEeecCeeeec-CCccccccCCcceecccc---------cccchhh-
Q 038788 48 NCTKLGVLVLDANRFGGALPFS-LANLSTTMTGIAIGNNQISCF-IPDGIANLVNLNALGVEF---------NQLAVTI- 115 (278)
Q Consensus 48 ~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~---------~~l~~~~- 115 (278)
.+++|++|++++|.+++..... +..++. |++|++++| ++.. .+.....+++|+.|++.+ +.++...
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~-L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPK-LQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTT-CCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCC-cCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 4555666666655544322111 223333 666666655 2211 111122356666665522 2333221
Q ss_pred ------hccccEEEeecccccccCCCCCC-CcccccEEEcc--c----Cccccc-----CCcCccCCCCCcEEEeecCcC
Q 038788 116 ------LKSLQMLFLHENILQGTIPCSLG-NLTMLTQRLLE--V----NDLLGN-----IPPSIGNCKNLILLTTRKNKP 177 (278)
Q Consensus 116 ------~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----n~~~~~-----~~~~~~~~~~L~~L~l~~~~~ 177 (278)
+++|++|.+..+.+++.....+. .+++|++|+++ + +.++.. ++..+..+++|+.|++++ .+
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l 443 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL 443 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence 45666666655555543333332 35677777776 2 222210 011134567777777765 44
Q ss_pred cccCCCCccc-ccccceeEEccCCcCcccCchhh-hcCCCCCEEEccCCeecccCCC-ccC-CCCccEEEccCCeecccC
Q 038788 178 SGTMPRQLPR-IITLSVLLNLSDNLLSGHFPAEV-GKLKNLISLDISSNMFSSEIST-TLG-CTSLEYLCMQDNSFIGSI 253 (278)
Q Consensus 178 ~~~~~~~~~~-~~~L~~~L~l~~n~~~~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~-~~~-~~~L~~l~l~~n~~~~~~ 253 (278)
++..+..+.. +++| +.|++++|.+++.....+ ..+++|++|++++|.+++.... ... +++|+.|++++|+++...
T Consensus 444 ~~~~~~~l~~~~~~L-~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKM-EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp CHHHHHHHHHHCTTC-CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred cHHHHHHHHHhchhc-cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 4433333333 5667 888888888765444443 5678888888888887543322 223 678888888888775433
Q ss_pred Cccc-cCCCCCcEEECCCCc
Q 038788 254 PSTL-SSLKSITELDLSCNN 272 (278)
Q Consensus 254 ~~~~-~~~~~L~~L~l~~n~ 272 (278)
...+ ..+|.++...+..+.
T Consensus 523 ~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 523 CKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHhCCCCEEEEecCCC
Confidence 3333 556777666665543
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=6.1e-17 Score=127.06 Aligned_cols=147 Identities=24% Similarity=0.220 Sum_probs=85.7
Q ss_pred ccEEEeecCeeeecCCccccccCCcceecccccccchh------hhccccEEEeecccccccCCCCCCCcccccEEEccc
Q 038788 77 MTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT------ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEV 150 (278)
Q Consensus 77 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 150 (278)
-+.++.+++.++ .+|..+. ++|+.|++++|.++.. .+++|++|++++|.+....+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 455666665555 2333322 5666666666665432 155666666666666544334456666666666666
Q ss_pred CcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecc
Q 038788 151 NDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSS 228 (278)
Q Consensus 151 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 228 (278)
|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++| +.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL-THLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC-CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 6665444444556666666666666665 455556666666 666666666664434455666666666666666553
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=6.8e-17 Score=120.61 Aligned_cols=131 Identities=21% Similarity=0.171 Sum_probs=95.6
Q ss_pred ccccEEEcccCccc-ccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEE
Q 038788 141 TMLTQRLLEVNDLL-GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISL 219 (278)
Q Consensus 141 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L 219 (278)
+++++|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++| +.|++++|.+.+..+..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL-KKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC-CEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC-CEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56677777777765 45666666777777777777776644 566677777 778888888776577777778888888
Q ss_pred EccCCeecccC--CCccCCCCccEEEccCCeecccCC---ccccCCCCCcEEECCCCccc
Q 038788 220 DISSNMFSSEI--STTLGCTSLEYLCMQDNSFIGSIP---STLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 220 ~L~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~ 274 (278)
++++|.+++.+ .....+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888887643 233337888888888888875443 36788888888888888876
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.4e-16 Score=121.51 Aligned_cols=109 Identities=22% Similarity=0.272 Sum_probs=50.7
Q ss_pred CCcEEEeecCcCcccCCC-CcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEE
Q 038788 166 NLILLTTRKNKPSGTMPR-QLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLC 243 (278)
Q Consensus 166 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~ 243 (278)
.++.|++++|.+++..+. .+..+++| +.|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCC-CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 444444444444433222 23444444 4444444444444444444445555555555554444443332 44555555
Q ss_pred ccCCeecccCCccccCCCCCcEEECCCCcccc
Q 038788 244 MQDNSFIGSIPSTLSSLKSITELDLSCNNLSG 275 (278)
Q Consensus 244 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 275 (278)
+++|++.+..+..+..+++|++|++++|++++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55555544444444445555555555555443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=7.2e-19 Score=155.27 Aligned_cols=185 Identities=17% Similarity=0.158 Sum_probs=134.0
Q ss_pred ccEEEeecCeeeecCCccccccCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEE-cc------
Q 038788 77 MTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRL-LE------ 149 (278)
Q Consensus 77 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~-l~------ 149 (278)
|+.|++++|+++ .+|..+..+++|+.|++++|.........+. .+...+..+..++.+++|+.|+ ++
T Consensus 351 L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~-----~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 351 LFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR-----ALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp SSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHH-----hcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 777777777776 4577777777777777755431110000000 0111223334444555555555 33
Q ss_pred -------cCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEcc
Q 038788 150 -------VNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDIS 222 (278)
Q Consensus 150 -------~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 222 (278)
+|.+.. ++ ...|+.|++++|.+++ +|. +..+++| +.|++++|.++ .+|..+..+++|+.|+++
T Consensus 425 L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 425 LRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQAS 494 (567)
T ss_dssp HHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred hhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECC
Confidence 333331 11 1358999999999985 676 8999999 99999999999 889999999999999999
Q ss_pred CCeecccCCCccCCCCccEEEccCCeecccC-CccccCCCCCcEEECCCCcccccCC
Q 038788 223 SNMFSSEISTTLGCTSLEYLCMQDNSFIGSI-PSTLSSLKSITELDLSCNNLSGHIP 278 (278)
Q Consensus 223 ~n~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~p 278 (278)
+|.+++.+ ....+++|+.|++++|++.+.. |..+..+++|+.|++++|++++.+|
T Consensus 495 ~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 495 DNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99999854 4444999999999999999776 8999999999999999999998754
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.2e-17 Score=151.75 Aligned_cols=138 Identities=24% Similarity=0.185 Sum_probs=74.2
Q ss_pred CCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccchh-----hhccccEEEeecccccccCCCCCCCc
Q 038788 66 LPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVT-----ILKSLQMLFLHENILQGTIPCSLGNL 140 (278)
Q Consensus 66 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~-----~~~~L~~l~l~~~~~~~~~~~~~~~~ 140 (278)
.+..+..+.. |++|++++|.+. .+|..+..+++|+.|+|++|.++.. .+++|++|++++|.++ .+|..++.+
T Consensus 216 ~~~~~~~l~~-L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQL-WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCC-CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCC-CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455555555 777777777766 4555555677777777776665411 1445555555555555 445556666
Q ss_pred ccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCc
Q 038788 141 TMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFP 207 (278)
Q Consensus 141 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~ 207 (278)
++|++|++++|.+. .+|..+..+++|+.|++++|.+++..|..+.........+++++|.+.+.+|
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 66666666666554 4555566666666666666666555554443332211224555555554443
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=2.3e-16 Score=115.35 Aligned_cols=128 Identities=21% Similarity=0.188 Sum_probs=102.8
Q ss_pred cccccEEEcccCccc-ccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCE
Q 038788 140 LTMLTQRLLEVNDLL-GNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLIS 218 (278)
Q Consensus 140 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~ 218 (278)
.+++++|++++|.+. +.+|..+..+++|+.|++++|.+++. ..+..+++| +.|++++|.+++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL-KKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC-CEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC-CEEECCCCcccchHHHHhhhCCCCCE
Confidence 467888888888876 56777778888888888888888754 667788888 89999999988667888888999999
Q ss_pred EEccCCeecccC--CCccCCCCccEEEccCCeecccCC---ccccCCCCCcEEECCC
Q 038788 219 LDISSNMFSSEI--STTLGCTSLEYLCMQDNSFIGSIP---STLSSLKSITELDLSC 270 (278)
Q Consensus 219 L~L~~n~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~L~~L~l~~ 270 (278)
|++++|.+++.+ .....+++|++|++++|++.+..+ ..+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999988743 333348999999999999886554 4688899999999874
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.8e-15 Score=113.80 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=75.7
Q ss_pred ccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEcc
Q 038788 119 LQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLS 198 (278)
Q Consensus 119 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~ 198 (278)
.+.+++++++++ .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++| +.|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL-TILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc-CEEECC
Confidence 455666666665 233222 2566667777666654444445666666666666666664444445566666 666666
Q ss_pred CCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecc
Q 038788 199 DNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIG 251 (278)
Q Consensus 199 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~ 251 (278)
+|.+++..+..+..+++|++|++++|.+++.++..+. +++|+++++++|.+.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6666644444455666666666666666655554443 5666666666666554
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.7e-16 Score=115.99 Aligned_cols=132 Identities=21% Similarity=0.149 Sum_probs=108.9
Q ss_pred hccccEEEeeccccc-ccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCccccccccee
Q 038788 116 LKSLQMLFLHENILQ-GTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL 194 (278)
Q Consensus 116 ~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~ 194 (278)
.++|++|++++|.++ +.++..+..+++|++|++++|.+... ..+..+++|++|++++|.+++.+|..+..+++| +.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL-TH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC-CE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC-CE
Confidence 467888888888876 56777788899999999999998754 678889999999999999987677777778899 99
Q ss_pred EEccCCcCccc-CchhhhcCCCCCEEEccCCeecccCC---CccC-CCCccEEEccCCeec
Q 038788 195 LNLSDNLLSGH-FPAEVGKLKNLISLDISSNMFSSEIS---TTLG-CTSLEYLCMQDNSFI 250 (278)
Q Consensus 195 L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~---~~~~-~~~L~~l~l~~n~~~ 250 (278)
|++++|.+++. .+..+..+++|+.|++++|.+++.++ ..+. +++|+.|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999843 22678889999999999999987766 2344 899999999998876
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=2.5e-17 Score=149.67 Aligned_cols=183 Identities=20% Similarity=0.242 Sum_probs=76.2
Q ss_pred ccEEEeecCeeeecCCccccccCCcceecccc-----cccch-----hhhccccEEEeecccccccCCCCCCCcccccEE
Q 038788 77 MTGIAIGNNQISCFIPDGIANLVNLNALGVEF-----NQLAV-----TILKSLQMLFLHENILQGTIPCSLGNLTMLTQR 146 (278)
Q Consensus 77 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-----~~l~~-----~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 146 (278)
++.|++.++.+... +..+.....|+.+.+.. |.+.. ..+..|+.|++++|.+. .++..+..+++|++|
T Consensus 175 ~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 175 TPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRL 252 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCC
T ss_pred cceEEeeCCCCCcc-hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEE
Confidence 67777777776642 33322222233322221 22110 11455666666666655 444445556666666
Q ss_pred EcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCee
Q 038788 147 LLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMF 226 (278)
Q Consensus 147 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~ 226 (278)
++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++| +.|++++|.++ .+|..+..+++|+.|+|++|.+
T Consensus 253 ~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 253 YLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL-KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp BCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC-SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred EeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC-CEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence 66666655 55555566666666666666655 455556666666 66666666665 4555566666666666666666
Q ss_pred cccCCCccC-C-CCccEEEccCCeecccCCccccCCCCCcEEECCCC
Q 038788 227 SSEISTTLG-C-TSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCN 271 (278)
Q Consensus 227 ~~~~~~~~~-~-~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 271 (278)
++.++..+. + ..+..+++++|.+.+.+|. .|+.|+++.|
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 554444332 1 1112245555555554443 3444555544
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=5.1e-16 Score=128.46 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=143.7
Q ss_pred cccccEEecCCCCCCC--ccCCCcc-----------c-cccccC--------CCCccEEEeecccccccCCchhhccccc
Q 038788 19 LQNLSWLNLGKNNLGT--WTTNDLH-----------F-ITFLTN--------CTKLGVLVLDANRFGGALPFSLANLSTT 76 (278)
Q Consensus 19 l~~L~~l~l~~~~~~~--~~~~~~~-----------~-~~~l~~--------~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 76 (278)
+++|++|||++|++.. .....+. + ...|.+ |++|+++++.. .++..-+.+|..+..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~- 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN- 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT-
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc-
Confidence 6789999999998882 1111000 0 123444 66666666666 555233344555555
Q ss_pred ccEEEeecCeeeecCCccccccCCcceeccccccc-------c---hhhhcccc-EEEeeccc-ccccCCCCCCCccccc
Q 038788 77 MTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQL-------A---VTILKSLQ-MLFLHENI-LQGTIPCSLGNLTMLT 144 (278)
Q Consensus 77 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l-------~---~~~~~~L~-~l~l~~~~-~~~~~~~~~~~~~~L~ 144 (278)
|+++++.+|.+....+..|..+.++..+....... . ...+..|+ .+.+.... +.......-.....+.
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 66666666666555555565555555554443211 0 00022222 12221110 0000000001123334
Q ss_pred EEEcccCcccccCCcCc-cCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCC-EEEcc
Q 038788 145 QRLLEVNDLLGNIPPSI-GNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLI-SLDIS 222 (278)
Q Consensus 145 ~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~-~L~L~ 222 (278)
.+.+.++-.. .....+ ..+++|+.+++++|.++...+..|..+.+| +.+++.+| +...-...|..+++|+ .+.+.
T Consensus 206 ~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L-~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 206 FLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL-LKIKLPHN-LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp EEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC-CEEECCTT-CCEECTTTTTTCTTCCEEEEEC
T ss_pred eEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC-CEEECCcc-cceehHHHhhCChhccEEEEEc
Confidence 4444332111 000111 137889999999888887777788888888 99999887 6655667788999999 99998
Q ss_pred CCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEEC
Q 038788 223 SNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDL 268 (278)
Q Consensus 223 ~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l 268 (278)
+ .++...+..+. |++|+.+++.+|.+....+.+|.+|++|+.++.
T Consensus 283 ~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 283 A-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp T-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred c-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8 66666667776 999999999988888666778899999998864
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=3.9e-15 Score=113.50 Aligned_cols=126 Identities=25% Similarity=0.255 Sum_probs=66.9
Q ss_pred ceecccccccchhh---hccccEEEeecccccccCCC-CCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcC
Q 038788 102 NALGVEFNQLAVTI---LKSLQMLFLHENILQGTIPC-SLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKP 177 (278)
Q Consensus 102 ~~L~l~~~~l~~~~---~~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~ 177 (278)
+.++++++.+.... ...+++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 44555555443211 23555555555555533322 245555555555555555544455555555555555555555
Q ss_pred cccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecc
Q 038788 178 SGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSS 228 (278)
Q Consensus 178 ~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 228 (278)
++..+..+..+++| +.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 91 ~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 91 KEISNKMFLGLHQL-KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CEECSSSSTTCTTC-CEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CccCHHHhcCCCCC-CEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55555555555555 555555555555445555555555555555555543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=5.6e-15 Score=112.68 Aligned_cols=126 Identities=22% Similarity=0.260 Sum_probs=83.0
Q ss_pred cEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccC
Q 038788 120 QMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSD 199 (278)
Q Consensus 120 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~ 199 (278)
+.++++++.++ .+|..+. +.+++|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++| +.|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-LTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-CEEECCC
Confidence 45666666666 3444332 46777777777765 555666677777777777777766555666667777 7777777
Q ss_pred CcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeec
Q 038788 200 NLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFI 250 (278)
Q Consensus 200 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~ 250 (278)
|.+++..+..|..+++|+.|++++|.++..++..+. +++|+.+++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777755555666677777777777777665555444 667777777777664
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=9e-16 Score=112.13 Aligned_cols=128 Identities=21% Similarity=0.160 Sum_probs=107.3
Q ss_pred hccccEEEeeccccc-ccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCccccccccee
Q 038788 116 LKSLQMLFLHENILQ-GTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVL 194 (278)
Q Consensus 116 ~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~ 194 (278)
.+++++|++++|.++ +.++..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++| +.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL-TH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC-CE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC-CE
Confidence 467888888888887 56777888899999999999998754 678889999999999999987677777778999 99
Q ss_pred EEccCCcCccc-CchhhhcCCCCCEEEccCCeecccCC---CccC-CCCccEEEccC
Q 038788 195 LNLSDNLLSGH-FPAEVGKLKNLISLDISSNMFSSEIS---TTLG-CTSLEYLCMQD 246 (278)
Q Consensus 195 L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~n~~~~~~~---~~~~-~~~L~~l~l~~ 246 (278)
|++++|.+++. .+..+..+++|++|++++|.+++.++ ..+. +++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999852 33778899999999999999988766 3444 89999998763
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.2e-14 Score=109.35 Aligned_cols=123 Identities=25% Similarity=0.247 Sum_probs=76.8
Q ss_pred eecccccccchh---hhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcc
Q 038788 103 ALGVEFNQLAVT---ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSG 179 (278)
Q Consensus 103 ~L~l~~~~l~~~---~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 179 (278)
.++++++.++.. ..+.+++|++++|.++ .++..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 445555544321 1346667777777666 445566666677777777776665545556666777777777777666
Q ss_pred cCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeec
Q 038788 180 TMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFS 227 (278)
Q Consensus 180 ~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~ 227 (278)
..+..+..+++| +.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 93 i~~~~f~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 93 IPPRTFDGLKSL-RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCTTTTTTCTTC-CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred eCHHHhCCCCCC-CEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555566666666 67777777766433445666667777777776654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2.5e-14 Score=107.55 Aligned_cols=129 Identities=20% Similarity=0.192 Sum_probs=74.9
Q ss_pred cEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccC
Q 038788 144 TQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISS 223 (278)
Q Consensus 144 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 223 (278)
+.++++++.+. .+|..+ .++++.|++++|.+++..+..+..+++| +.|++++|.+++..+..+..+++|+.|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL-TKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-cEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45555555554 333322 2466666666666654444455566666 6666666666644344455666666666666
Q ss_pred CeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCccccc
Q 038788 224 NMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNLSGH 276 (278)
Q Consensus 224 n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 276 (278)
|.+++.++..+. +++|+.|++++|++.+..+..+..+++|++|++++|++++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 666655555443 66666666666666644443445566666666666666553
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=5.8e-15 Score=110.92 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=80.4
Q ss_pred CCCcccccEEEcccCcccccCCcCccCC-CCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCC
Q 038788 137 LGNLTMLTQRLLEVNDLLGNIPPSIGNC-KNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKN 215 (278)
Q Consensus 137 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~ 215 (278)
+..++++++|++++|.+. .++. +..+ ++|+.|++++|.+++. ..+..+++| +.|++++|.+++..+..+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRL-KTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSC-CEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCC-CEEECCCCcccccCcchhhcCCC
Confidence 344566666677666665 3332 3333 3677777777766643 455666666 77777777776433334466777
Q ss_pred CCEEEccCCeecccCC--CccCCCCccEEEccCCeecccCCcc----ccCCCCCcEEECCCCcc
Q 038788 216 LISLDISSNMFSSEIS--TTLGCTSLEYLCMQDNSFIGSIPST----LSSLKSITELDLSCNNL 273 (278)
Q Consensus 216 L~~L~L~~n~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~l 273 (278)
|++|++++|.++..+. ....+++|+.+++++|++. .++.. +..+++|++||+++|..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777777755433 2223677777777777766 34443 66777777777777664
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=2.6e-16 Score=120.68 Aligned_cols=156 Identities=21% Similarity=0.177 Sum_probs=96.0
Q ss_pred cCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCcccc
Q 038788 17 GGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIA 96 (278)
Q Consensus 17 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 96 (278)
.....++.++++.+.+++..+..-.++..+..+++|++|++++|.+++ +| .+..+.. |++|++++|.++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~-L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMEN-LRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTT-CCEEEEEEEEEC-SCSSHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCC-CCEEECCCCCcc-cccchhh
Confidence 344555566666666655433222333456666667777777666663 55 5555555 777777766666 3455555
Q ss_pred ccCCcceecccccccchh----hhccccEEEeecccccccCC-CCCCCcccccEEEcccCcccccCCcC----------c
Q 038788 97 NLVNLNALGVEFNQLAVT----ILKSLQMLFLHENILQGTIP-CSLGNLTMLTQRLLEVNDLLGNIPPS----------I 161 (278)
Q Consensus 97 ~l~~L~~L~l~~~~l~~~----~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~----------~ 161 (278)
.+++|+.|++++|+++.. .+++|++|++++|.+++... ..+..+++|++|++++|.+.+..|.. +
T Consensus 91 ~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred cCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 566677777776666542 26677777777777763221 35667788888888888876554432 6
Q ss_pred cCCCCCcEEEeecCcCc
Q 038788 162 GNCKNLILLTTRKNKPS 178 (278)
Q Consensus 162 ~~~~~L~~L~l~~~~~~ 178 (278)
..+++|+.|+ ++.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 6788888876 44443
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=1.6e-16 Score=121.90 Aligned_cols=119 Identities=26% Similarity=0.283 Sum_probs=64.2
Q ss_pred CCcccccceeccc------cccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccc
Q 038788 2 NTIRNIFSGKVSI------NFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLST 75 (278)
Q Consensus 2 ~l~~n~~~~~~~~------~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 75 (278)
+++.+.+.|..|. .++++++|++|++++|++++.+ .+..+++|++|++++|.++ .+|..+..++.
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--------~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--------CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--------ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 4555555555554 5555566666666666555421 2455556666666666555 45554444444
Q ss_pred cccEEEeecCeeeecCCccccccCCcceecccccccchhh-------hccccEEEeeccccccc
Q 038788 76 TMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAVTI-------LKSLQMLFLHENILQGT 132 (278)
Q Consensus 76 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~-------~~~L~~l~l~~~~~~~~ 132 (278)
|++|++++|++++. | .+..+++|+.|++++|+++... +++|+++++++|.+.+.
T Consensus 95 -L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 95 -LEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp -CSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred -CCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 66666666655542 2 3555556666666666554211 45566666666655443
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=6e-13 Score=112.65 Aligned_cols=209 Identities=10% Similarity=0.074 Sum_probs=90.8
Q ss_pred ccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccc------hhhhccccEEEee
Q 038788 52 LGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLA------VTILKSLQMLFLH 125 (278)
Q Consensus 52 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~------~~~~~~L~~l~l~ 125 (278)
|+.+.+.. .++..-+.+|..+.. |+.+++..|.++......|. ..+|+.+.+..+ +. +..+++|+.+++.
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~-L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYN-LKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTT-CCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred ceEEEeCC-CccEehHHHhhCccc-CCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 55555543 232122233444444 55555555444433333333 344555444422 11 1114445555544
Q ss_pred cccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCc-----ccCCCCcccccccceeEEccCC
Q 038788 126 ENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPS-----GTMPRQLPRIITLSVLLNLSDN 200 (278)
Q Consensus 126 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~~L~l~~n 200 (278)
.+ +......+|.. ++|+.+.+.. .+......+|.++++|+.+++.++... ...+..|..+.+| +.+.+.+
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L-~~l~l~~- 309 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL-ARFEIPE- 309 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC-CEECCCT-
T ss_pred CC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC-CeEEeCC-
Confidence 32 22222333333 4455555532 233223344555555555555554332 2233444555555 5555552
Q ss_pred cCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCC-CCcEEECCCC
Q 038788 201 LLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLK-SITELDLSCN 271 (278)
Q Consensus 201 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n 271 (278)
.+...-...|..+++|+.+.+..+ ++.....++. + +|+.+.+.+|.........+.+++ .++.+.+-.+
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 233233344555555555555433 3333344443 4 555555555554433333444443 4445554443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=3.1e-14 Score=117.71 Aligned_cols=215 Identities=12% Similarity=0.059 Sum_probs=134.2
Q ss_pred cccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCee----eecCCcc
Q 038788 19 LQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQI----SCFIPDG 94 (278)
Q Consensus 19 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~ 94 (278)
+++|+.+++.+ .++.+.. .+|.+|++|+++++++|.+....+.+|..+.. +.++....... .......
T Consensus 100 ~~~L~~l~L~~-~i~~I~~------~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~-l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIED------AAFKGCDNLKICQIRKKTAPNLLPEALADSVT-AIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp CTTCCC-CBCT-TCCEECT------TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTC-EEEECTTCTHHHHTSTTTTTSC
T ss_pred cCCCcEEECCc-cccchhH------HHhhcCcccceEEcCCCCccccchhhhcCCCc-eEEecCcchhhhhccccccccc
Confidence 99999999999 8887654 45889999999999999887455566666544 55555444221 1122333
Q ss_pred ccccCCcc-eecccccccchh-------hhccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCC
Q 038788 95 IANLVNLN-ALGVEFNQLAVT-------ILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKN 166 (278)
Q Consensus 95 l~~l~~L~-~L~l~~~~l~~~-------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 166 (278)
+..+..|+ .+.+.....-.. ...++..+.+.++-...........+++|+++++++|.+......+|.++++
T Consensus 172 f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp EEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred cccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 45555555 333322211000 0345555555543211111000112567777787777776444556777778
Q ss_pred CcEEEeecCcCcccCCCCcccccccce-eEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEc
Q 038788 167 LILLTTRKNKPSGTMPRQLPRIITLSV-LLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCM 244 (278)
Q Consensus 167 L~~L~l~~~~~~~~~~~~~~~~~~L~~-~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l 244 (278)
|+.+++..+ ++...+..|..+.+| + .+.+.+ .+...-+..|..+++|+.+++++|.++...+.++. +++|+.++.
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L-~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRL-AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTC-CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEECCcc-cceehHHHhhCChhc-cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888887776 555566667777777 7 777777 55545556777888888888888888777776666 788887763
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=2e-12 Score=109.47 Aligned_cols=236 Identities=12% Similarity=0.082 Sum_probs=176.3
Q ss_pred cccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCcccccc
Q 038788 19 LQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGIANL 98 (278)
Q Consensus 19 l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 98 (278)
+..++.+.+.++ ++.+.. .+|.++ +|+.+.+..+ ++..-..+|.+ .. |+.+.+.. .++......|.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~------~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~-L~~i~lp~-~l~~I~~~aF~~c 179 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPK------DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-ST-VQEIVFPS-TLEQLKEDIFYYC 179 (401)
T ss_dssp CSSCSEEECCTT-CCEECT------TTTTTC-CCSEEECCTT-CCEECTTTTTT-CC-CCEEECCT-TCCEECSSTTTTC
T ss_pred cCCccEEEECCc-cCEehH------hhcccC-CccEEEeCCC-ccEECHHhcCC-CC-ceEEEeCC-CccEehHHHhhCc
Confidence 355666666543 444433 335666 6999999766 55333455655 34 99999987 6676777889999
Q ss_pred CCcceecccccccchhh-----hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEee
Q 038788 99 VNLNALGVEFNQLAVTI-----LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTR 173 (278)
Q Consensus 99 ~~L~~L~l~~~~l~~~~-----~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 173 (278)
++|+.+++..|.++... +.+|+.+.+..+ +......+|..+++|+.+.+..+ +......+|.+ ++|+.+.+.
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC
Confidence 99999999988775322 678999999854 65566778999999999999875 44344456666 789999995
Q ss_pred cCcCcccCCCCcccccccceeEEccCCcCc-----ccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCC
Q 038788 174 KNKPSGTMPRQLPRIITLSVLLNLSDNLLS-----GHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDN 247 (278)
Q Consensus 174 ~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n 247 (278)
. .++......|..+.+| +.+.+.++.+. ......|..+++|+.+.+.+ .++.....++. |++|+.+.+..+
T Consensus 257 ~-~i~~I~~~aF~~c~~L-~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 257 N-GVTNIASRAFYYCPEL-AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp T-TCCEECTTTTTTCTTC-CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred C-CccEEChhHhhCCCCC-CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 4 4665667788899999 99999887764 34456788999999999985 47767777776 899999999765
Q ss_pred eecccCCccccCCCCCcEEECCCCccc
Q 038788 248 SFIGSIPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 248 ~~~~~~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
+...-..+|.+| +|+.+++.+|.+.
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 554556688999 9999999998765
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=3.8e-14 Score=106.44 Aligned_cols=127 Identities=17% Similarity=0.093 Sum_probs=80.7
Q ss_pred cccEEEeecccccccCCCCCCCc-ccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEE
Q 038788 118 SLQMLFLHENILQGTIPCSLGNL-TMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLN 196 (278)
Q Consensus 118 ~L~~l~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~ 196 (278)
+|++|++++|.++ .++ .+..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++| +.|+
T Consensus 20 ~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL-TELI 94 (176)
T ss_dssp SCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC-CEEE
T ss_pred CceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC-CEEE
Confidence 4444444444444 222 23333 3777777777777643 456677777777777777765433444667777 7777
Q ss_pred ccCCcCcccCch--hhhcCCCCCEEEccCCeecccCCC---ccC-CCCccEEEccCCeec
Q 038788 197 LSDNLLSGHFPA--EVGKLKNLISLDISSNMFSSEIST---TLG-CTSLEYLCMQDNSFI 250 (278)
Q Consensus 197 l~~n~~~~~~~~--~~~~~~~L~~L~L~~n~~~~~~~~---~~~-~~~L~~l~l~~n~~~ 250 (278)
+++|.++ .++. .+..+++|+.|++++|.+...+.. .+. +++|+.+++++|...
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777776 4444 667777888888888877754432 133 778888888777654
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=2.3e-13 Score=101.51 Aligned_cols=104 Identities=21% Similarity=0.207 Sum_probs=66.6
Q ss_pred ccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEcc
Q 038788 143 LTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDIS 222 (278)
Q Consensus 143 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 222 (278)
.+.++++++.+. .+|..+ .+.++.|++++|.+++..|..+..+++| +.|++++|.+++..+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L-~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL-TRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-CEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456777777665 355443 2666777777777766556666666666 677777777664444455666677777777
Q ss_pred CCeecccCCCccC-CCCccEEEccCCeec
Q 038788 223 SNMFSSEISTTLG-CTSLEYLCMQDNSFI 250 (278)
Q Consensus 223 ~n~~~~~~~~~~~-~~~L~~l~l~~n~~~ 250 (278)
+|++++.++..+. +++|+.|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7776665555444 666777777776665
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=8.4e-13 Score=98.81 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=68.5
Q ss_pred cEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccC
Q 038788 144 TQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISS 223 (278)
Q Consensus 144 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 223 (278)
+.++++++.+. .+|..+. +.|+.|++++|.+++..|..+..+++| +.|++++|.+++..+..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL-QQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC-CEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777664 5555443 667777777777776666667777777 7777777777744334456677777777777
Q ss_pred CeecccCCCccC-CCCccEEEccCCeec
Q 038788 224 NMFSSEISTTLG-CTSLEYLCMQDNSFI 250 (278)
Q Consensus 224 n~~~~~~~~~~~-~~~L~~l~l~~n~~~ 250 (278)
|++++.++..+. +++|+.|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777766555444 677777777777665
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=2.9e-13 Score=101.00 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=70.1
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
+|+++|.++. +|..+. ++|++|++++|++++..+ ..+..+++|++|++++|.++...+..|..+.. |++|
T Consensus 14 l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~-L~~L 83 (170)
T 3g39_A 14 VDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEP------GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ-LTQL 83 (170)
T ss_dssp EECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCT------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-CCEE
T ss_pred EEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccCh------hhhcCcccCCEEECCCCCcCccChhhccCCCC-CCEE
Confidence 4667777774 565553 677778888887777544 34666777788888888777444444555655 7888
Q ss_pred EeecCeeeecCCccccccCCcceecccccccc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLA 112 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 112 (278)
++++|++++..+..+..+++|+.|++++|++.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88877777665556777777777777777765
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=5.2e-13 Score=99.94 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=66.9
Q ss_pred CCCcccccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEE
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGI 80 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 80 (278)
+|+++|.++ .+|..+. ++|++|++++|++++..+ ..+.++++|++|++++|.+++..+..|.++.. |++|
T Consensus 17 l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~-L~~L 86 (174)
T 2r9u_A 17 VNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEP------GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ-LTQL 86 (174)
T ss_dssp EECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEE
T ss_pred EEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCH------HHhcCCcCCCEEECCCCCCCccChhHhCCcch-hhEE
Confidence 356666664 4666554 677777777777776543 34666777777777777777333333455555 7777
Q ss_pred EeecCeeeecCCccccccCCcceecccccccc
Q 038788 81 AIGNNQISCFIPDGIANLVNLNALGVEFNQLA 112 (278)
Q Consensus 81 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 112 (278)
++++|++++..+..+..+++|+.|++++|++.
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 77777777555555777777777777777665
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=1.3e-14 Score=121.61 Aligned_cols=168 Identities=18% Similarity=0.119 Sum_probs=78.3
Q ss_pred ccccEEecCCCCCCCccCCCccccccccC-CCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccc---
Q 038788 20 QNLSWLNLGKNNLGTWTTNDLHFITFLTN-CTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGI--- 95 (278)
Q Consensus 20 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--- 95 (278)
++|++|++++|.++..... .+...+.. +++|++|++++|.+++.....+.....+|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCT--VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHH--HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHH--HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4566666666666543221 12222332 24666666666666533333333322236666666666554322222
Q ss_pred --cccCCcceecccccccchhhhccccEEEeecccccccCCCCCCCcccccEEEcccCccccc----CCcCccCCCCCcE
Q 038788 96 --ANLVNLNALGVEFNQLAVTILKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGN----IPPSIGNCKNLIL 169 (278)
Q Consensus 96 --~~l~~L~~L~l~~~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~ 169 (278)
...++|+.|++++|.++..+.. .++..+...++|++|++++|.+... +...+...++|+.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~--------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVA--------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHH--------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE
T ss_pred HHhcCCccceeeCCCCCCChHHHH--------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe
Confidence 1234555555555555432100 1112223344555555555554422 1223344455666
Q ss_pred EEeecCcCccc----CCCCcccccccceeEEccCCcCcc
Q 038788 170 LTTRKNKPSGT----MPRQLPRIITLSVLLNLSDNLLSG 204 (278)
Q Consensus 170 L~l~~~~~~~~----~~~~~~~~~~L~~~L~l~~n~~~~ 204 (278)
|++++|.+++. ++..+...++| +.|++++|.+++
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L-~~L~Ls~N~i~~ 253 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSL-ELLHLYFNELSS 253 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSC-CEEECTTSSCCH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCC-CEEeccCCCCCH
Confidence 66666655432 12222334555 666666666653
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=3e-14 Score=119.47 Aligned_cols=152 Identities=17% Similarity=0.082 Sum_probs=82.7
Q ss_pred cccEEEeecCeeeecCCccccc-----cCCcceecccccccchhh-------hccccEEEeecccccccCCCCC-----C
Q 038788 76 TMTGIAIGNNQISCFIPDGIAN-----LVNLNALGVEFNQLAVTI-------LKSLQMLFLHENILQGTIPCSL-----G 138 (278)
Q Consensus 76 ~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~l~~~~-------~~~L~~l~l~~~~~~~~~~~~~-----~ 138 (278)
.|++|++++|.++......+.. .++|+.|++++|.++... +.+|++|++++|.+++.....+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 3666666666655432222222 246666666666665432 4556666666666654322222 1
Q ss_pred CcccccEEEcccCccccc----CCcCccCCCCCcEEEeecCcCcccC----CCCcccccccceeEEccCCcCccc----C
Q 038788 139 NLTMLTQRLLEVNDLLGN----IPPSIGNCKNLILLTTRKNKPSGTM----PRQLPRIITLSVLLNLSDNLLSGH----F 206 (278)
Q Consensus 139 ~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~~L~l~~n~~~~~----~ 206 (278)
..+.|++|++++|.++.. ++..+..+++|++|++++|.+++.. +..+...++| +.|++++|.+++. +
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L-~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL-QELNVAYNGAGDTAALAL 231 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC-CEEECCSSCCCHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc-CeEECCCCCCCHHHHHHH
Confidence 245677777777766432 2233355666777777777665321 3334444555 6666666666532 2
Q ss_pred chhhhcCCCCCEEEccCCeecc
Q 038788 207 PAEVGKLKNLISLDISSNMFSS 228 (278)
Q Consensus 207 ~~~~~~~~~L~~L~L~~n~~~~ 228 (278)
+..+...++|++|+|++|.+++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2334445666666666666654
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.7e-11 Score=101.86 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=86.0
Q ss_pred CCccc-ccceeccccccCcccccEEecCC-CCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccE
Q 038788 2 NTIRN-IFSGKVSINFGGLQNLSWLNLGK-NNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTG 79 (278)
Q Consensus 2 ~l~~n-~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 79 (278)
|.+++ +++. +|. +..+.+|+.|+|++ |++++.++ ..|..+++|++|+|++|.+++..|..|.++.. |++
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~ 84 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLEL------RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR-LSR 84 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECG------GGSCSCCCCSEEECCSSCCCEECTTGGGSCSC-CCE
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcCh------hHhccccCCCEEECCCCccceeCHHHhcCCcC-CCE
Confidence 55666 7875 888 99999999999996 99998654 45788999999999999999777888888888 999
Q ss_pred EEeecCeeeecCCccccccCCcceecccccccch
Q 038788 80 IAIGNNQISCFIPDGIANLVNLNALGVEFNQLAV 113 (278)
Q Consensus 80 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 113 (278)
|+|++|++++..+..+..++ |+.|++.+|.+..
T Consensus 85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999999976666666565 9999999999864
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.21 E-value=9.9e-10 Score=92.90 Aligned_cols=191 Identities=11% Similarity=0.060 Sum_probs=97.1
Q ss_pred hhcccccccEEEeecCeeeecCCccccccCCcceeccccccc-----chhhhcc----------------------ccEE
Q 038788 70 LANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQL-----AVTILKS----------------------LQML 122 (278)
Q Consensus 70 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l-----~~~~~~~----------------------L~~l 122 (278)
|..+.. |+.+.+..+. .......|..+.+|+.+.+..+-- ....+.. |+.+
T Consensus 158 F~~c~~-L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 158 FATCES-LEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNI 235 (394)
T ss_dssp TTTCTT-CCEEECCTTC-CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEE
T ss_pred hcccCC-CcEEecCCcc-ceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEeehhhcccCCCceE
Confidence 444444 7777776543 324445566677777776654411 0111333 3333
Q ss_pred EeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcC
Q 038788 123 FLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLL 202 (278)
Q Consensus 123 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~ 202 (278)
.+.... .......+..+..++.+.+..+... .....+..+..++.+......+ ....+..+.+| +.+.+.++ +
T Consensus 236 ~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L-~~i~l~~~-i 308 (394)
T 4fs7_A 236 IIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSL-TEVKLLDS-V 308 (394)
T ss_dssp EECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTC-CEEEECTT-C
T ss_pred EECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccc-cccccccc-c
Confidence 332211 1122234444555555555443221 2233444555555554433221 12234455556 66666543 3
Q ss_pred cccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCC
Q 038788 203 SGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCN 271 (278)
Q Consensus 203 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 271 (278)
...-...|..+.+|+.+.+..+ ++.....++. |.+|+.+.+..+ ++..-..+|.+|.+|+.+++..+
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 3233445667777777777544 4445555555 777777777655 44344456777777777777543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=1.2e-10 Score=96.80 Aligned_cols=103 Identities=19% Similarity=0.090 Sum_probs=81.2
Q ss_pred EEEcccC-cccccCCcCccCCCCCcEEEeec-CcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEcc
Q 038788 145 QRLLEVN-DLLGNIPPSIGNCKNLILLTTRK-NKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDIS 222 (278)
Q Consensus 145 ~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 222 (278)
.++.+++ .+. .+|. +..+++|+.|++++ |.+++..+..+..+++| +.|++++|.+++..+..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL-RNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-SEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-CEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4577776 665 5777 88888888888885 88887666778888888 888888888887777778888888888888
Q ss_pred CCeecccCCCccCCCCccEEEccCCeec
Q 038788 223 SNMFSSEISTTLGCTSLEYLCMQDNSFI 250 (278)
Q Consensus 223 ~n~~~~~~~~~~~~~~L~~l~l~~n~~~ 250 (278)
+|++++.++..+....|+.|++++|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCcc
Confidence 8888877776666333888888888876
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.06 E-value=1.7e-08 Score=85.31 Aligned_cols=109 Identities=13% Similarity=0.187 Sum_probs=66.3
Q ss_pred cCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CC
Q 038788 159 PSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CT 237 (278)
Q Consensus 159 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~ 237 (278)
.+|..+..|+.+.+..+.. ......+..+..| +.+.+.. .+...-...|..+.+|+.+.+..+ ++.....++. |.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L-~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPAL-QDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTC-CEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccc-eecCccccccccc-ccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 3455666677776654332 2334455566666 6666643 333233456777778888887654 4445555555 77
Q ss_pred CccEEEccCCeecccCCccccCCCCCcEEECCCCc
Q 038788 238 SLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNN 272 (278)
Q Consensus 238 ~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 272 (278)
+|+.+.+..+ ++..-..+|.+|.+|+.+++.++.
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 8888877543 443344567788888888877654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.94 E-value=2.8e-08 Score=83.97 Aligned_cols=141 Identities=9% Similarity=0.057 Sum_probs=104.2
Q ss_pred hccccEEEeecccccccCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeE
Q 038788 116 LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLL 195 (278)
Q Consensus 116 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L 195 (278)
+..++.+.+..+... .....+..+..++.+......+ ....+..+.+|+.+.+..+ ++......|..+.+| +.+
T Consensus 252 ~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L-~~i 325 (394)
T 4fs7_A 252 CTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL-VSI 325 (394)
T ss_dssp CSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC-CEE
T ss_pred cccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCC-CEE
Confidence 677888888766443 4556777788888887765533 2346788999999998764 554556678888899 888
Q ss_pred EccCCcCcccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEE
Q 038788 196 NLSDNLLSGHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITEL 266 (278)
Q Consensus 196 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L 266 (278)
++..+ +...-...|.++.+|+.+.+..+ ++.....++. |++|+.+.+..+ +. .+..++.+|.+|+++
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 88754 55444567889999999999877 6666677776 999999999754 23 345678899988875
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=2.7e-10 Score=94.82 Aligned_cols=177 Identities=15% Similarity=0.096 Sum_probs=106.6
Q ss_pred cccccCCCCccEEEeeccccc---------ccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccch
Q 038788 43 ITFLTNCTKLGVLVLDANRFG---------GALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLAV 113 (278)
Q Consensus 43 ~~~l~~~~~L~~L~l~~~~l~---------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 113 (278)
.++...+++|+.|.+...... +.+...+..++. |+.|+++++.-. ..+. + .+++|+.|++..+.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~-L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPL-LNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTT-CCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCC-CcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh
Confidence 344556677777777544221 012222333344 888888776311 1222 3 36778888887777654
Q ss_pred hh--------hccccEEEeecc--cccc-----cCCCCC--CCcccccEEEcccCcccccCCcCc---cCCCCCcEEEee
Q 038788 114 TI--------LKSLQMLFLHEN--ILQG-----TIPCSL--GNLTMLTQRLLEVNDLLGNIPPSI---GNCKNLILLTTR 173 (278)
Q Consensus 114 ~~--------~~~L~~l~l~~~--~~~~-----~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~ 173 (278)
.. +++|++|+++.+ ...+ .+...+ ..+++|+.|.+.+|.+....+..+ ..+++|+.|+++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 32 577888887531 1111 111122 247899999998888764322222 247889999999
Q ss_pred cCcCccc----CCCCcccccccceeEEccCCcCcccCchhhhcCCCCCEEEccCCe
Q 038788 174 KNKPSGT----MPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLISLDISSNM 225 (278)
Q Consensus 174 ~~~~~~~----~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 225 (278)
.|.+.+. ++..+..+++| +.|++++|.+++.....+...- ...+++++++
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L-~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHL-KFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTC-SEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CCCCChHHHHHHHhhcccCCcc-eEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 9988753 34445567888 9999999998865454454311 3568888776
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=2.1e-09 Score=89.53 Aligned_cols=177 Identities=17% Similarity=0.187 Sum_probs=102.6
Q ss_pred chhhcccccccEEEeecCeee---------ecCCccccccCCcceecccccc-cc--hhhhccccEEEeecccccccCCC
Q 038788 68 FSLANLSTTMTGIAIGNNQIS---------CFIPDGIANLVNLNALGVEFNQ-LA--VTILKSLQMLFLHENILQGTIPC 135 (278)
Q Consensus 68 ~~~~~~~~~L~~L~l~~~~~~---------~~~~~~l~~l~~L~~L~l~~~~-l~--~~~~~~L~~l~l~~~~~~~~~~~ 135 (278)
.++..++. |+.|.+...... +.+...+..+|+|+.|.++++. +. ...+++|++|++..+.+......
T Consensus 133 ~s~~~l~~-L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 133 ENKEKFAH-FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp TTHHHHTT-CSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHH
T ss_pred Hhhhhcch-hhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHH
Confidence 34445555 888887654221 0122334567888888887763 21 11267888888887777543323
Q ss_pred CCC--CcccccEEEccc--Cccccc-----CCcCc--cCCCCCcEEEeecCcCcccCCCCc---ccccccceeEEccCCc
Q 038788 136 SLG--NLTMLTQRLLEV--NDLLGN-----IPPSI--GNCKNLILLTTRKNKPSGTMPRQL---PRIITLSVLLNLSDNL 201 (278)
Q Consensus 136 ~~~--~~~~L~~L~l~~--n~~~~~-----~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~~L~l~~n~ 201 (278)
.+. .+++|++|+++. +...+. +...+ ..+|+|+.|++++|.+.+..+..+ ..+++| +.|+++.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L-~~LdLs~n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQL-ETMDISAGV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGC-SEEECCSSC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCC-CEEECCCCC
Confidence 332 577888888753 111111 11122 247888888888887764322222 246677 888888888
Q ss_pred Cccc----CchhhhcCCCCCEEEccCCeecccCCCccC--CCCccEEEccCCe
Q 038788 202 LSGH----FPAEVGKLKNLISLDISSNMFSSEISTTLG--CTSLEYLCMQDNS 248 (278)
Q Consensus 202 ~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~--~~~L~~l~l~~n~ 248 (278)
+++. ++..+..+++|+.|++++|.+++.....+. + ...+++++++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 8743 233345568888888888877654332221 1 2446777665
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=3.6e-10 Score=85.24 Aligned_cols=115 Identities=16% Similarity=0.077 Sum_probs=71.3
Q ss_pred cccccCcccccEEecCCC-CCCCccCCCccccccccCCCCccEEEeecccccccC----CchhhcccccccEEEeecCee
Q 038788 13 SINFGGLQNLSWLNLGKN-NLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGAL----PFSLANLSTTMTGIAIGNNQI 87 (278)
Q Consensus 13 ~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~~L~~L~l~~~~~ 87 (278)
...+...+.|++|++++| .++..... .+.+.+..+++|++|++++|.+++.. ...+..... |++|++++|.+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~--~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~-L~~L~L~~N~i 105 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLK--ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT-LKSLNVESNFI 105 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHH--HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSS-CCEEECCSSCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHH--HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCC-cCEEECcCCcC
Confidence 334556777888888888 77653222 34556677778888888888876432 233333344 88888888877
Q ss_pred eec----CCccccccCCcceecc--cccccchhh----------hccccEEEeeccccc
Q 038788 88 SCF----IPDGIANLVNLNALGV--EFNQLAVTI----------LKSLQMLFLHENILQ 130 (278)
Q Consensus 88 ~~~----~~~~l~~l~~L~~L~l--~~~~l~~~~----------~~~L~~l~l~~~~~~ 130 (278)
+.. +...+...+.|+.|++ ++|.+...+ .+.|++|++++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 643 2344556667777777 667776543 244555555555443
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.82 E-value=5.2e-07 Score=75.67 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=67.0
Q ss_pred CCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCCC
Q 038788 138 GNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNLI 217 (278)
Q Consensus 138 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L~ 217 (278)
.....++.+.+..+ +.......+..+..|+.+.+..+ ++......+..+..+ +.+.+..+ +.......|..+.+|+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l-~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL-KTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC-CEEEECCC-CSEECTTTTTTCTTCC
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh-cccccccc-ceeccccccccccccc
Confidence 33445555555432 22223344556666666666543 333334445555555 55555433 2223334556666777
Q ss_pred EEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECC
Q 038788 218 SLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLS 269 (278)
Q Consensus 218 ~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~ 269 (278)
.+.+.++.++.....++. |.+|+.+.+..+ ++..-..+|.+|.+|+.+.+.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 777766666555555554 667777766543 332334456666666666654
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.81 E-value=5.1e-07 Score=76.22 Aligned_cols=133 Identities=11% Similarity=0.138 Sum_probs=91.6
Q ss_pred CCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhc
Q 038788 133 IPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGK 212 (278)
Q Consensus 133 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~ 212 (278)
...+|..+..|+.+.+..+.. .....+|.+++.|+.+.+.. .++......|..+.+| +.+.+..+ ++..-...|..
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L-~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISL-KSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTC-CEEECCTT-CCEECTTTTTT
T ss_pred ccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCc-CEEEeCCc-ccEehHhHhhC
Confidence 345777888999999876543 24456788999999999964 4554556678888899 99999765 44344567889
Q ss_pred CCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCCcc
Q 038788 213 LKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCNNL 273 (278)
Q Consensus 213 ~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 273 (278)
+.+|+.+.+..+ ++.....++. |.+|+.+.+.++.... ..+..+..|+.+.+..+.+
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999999999755 5656666666 9999999999875431 3567788899998877654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=1.5e-09 Score=81.83 Aligned_cols=114 Identities=15% Similarity=0.088 Sum_probs=70.7
Q ss_pred CccCCCCCcEEEeecC-cCccc----CCCCcccccccceeEEccCCcCccc----CchhhhcCCCCCEEEccCCeecccC
Q 038788 160 SIGNCKNLILLTTRKN-KPSGT----MPRQLPRIITLSVLLNLSDNLLSGH----FPAEVGKLKNLISLDISSNMFSSEI 230 (278)
Q Consensus 160 ~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~ 230 (278)
.+...+.|++|++++| .+... +...+...+++ +.|++++|.+.+. +...+...++|++|+|++|.+.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L-~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYV-KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSC-CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCc-CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3445566666666666 55432 22233344556 7777777777632 3344555677888888888777532
Q ss_pred ----CCccC-CCCccEEEc--cCCeeccc----CCccccCCCCCcEEECCCCccc
Q 038788 231 ----STTLG-CTSLEYLCM--QDNSFIGS----IPSTLSSLKSITELDLSCNNLS 274 (278)
Q Consensus 231 ----~~~~~-~~~L~~l~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~ 274 (278)
...+. .++|++|++ ++|.+.+. +...+...+.|++|++++|.++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 22222 677888888 77777653 3445566688888888888775
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.63 E-value=1.3e-08 Score=75.23 Aligned_cols=93 Identities=9% Similarity=-0.057 Sum_probs=66.8
Q ss_pred ccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeeccc-ccccCCchhhcc---cccccEEEeecCe-
Q 038788 12 VSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANR-FGGALPFSLANL---STTMTGIAIGNNQ- 86 (278)
Q Consensus 12 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~---~~~L~~L~l~~~~- 86 (278)
+|.....-.+|+.||+++|.++.. ....+..|++|++|+|++|. +++..-..+..+ .++|++|++++|.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~------GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSI------GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGG------GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred CCcccCCCceEeEEeCcCCCccHH------HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 344332334699999999988763 33557889999999999995 775444445543 2249999999975
Q ss_pred eeecCCccccccCCcceecccccc
Q 038788 87 ISCFIPDGIANLVNLNALGVEFNQ 110 (278)
Q Consensus 87 ~~~~~~~~l~~l~~L~~L~l~~~~ 110 (278)
++...-..+..+++|+.|++++|.
T Consensus 127 ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 127 VTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCHHHHHHHhcCCCCCEEECCCCC
Confidence 776555567788889999888885
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=2e-08 Score=79.62 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=34.3
Q ss_pred CCCCccEEEeecccccc--cCCchhhcccccccEEEeecCeeeecCCccccccC--Ccceecccccccc
Q 038788 48 NCTKLGVLVLDANRFGG--ALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLV--NLNALGVEFNQLA 112 (278)
Q Consensus 48 ~~~~L~~L~l~~~~l~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~ 112 (278)
++++|++|+|++|.+++ .+|..+..++. |+.|+|++|++++. ..+..+. +|+.|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~-L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPN-LKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTT-CCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCC-CCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 45566666666666654 33444444544 66666666666543 2233333 6666666666665
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.43 E-value=4.3e-05 Score=63.91 Aligned_cols=239 Identities=9% Similarity=0.070 Sum_probs=130.5
Q ss_pred ccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeecccccccCCchhhcccccccEEEeecCeeeecCCccc
Q 038788 16 FGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPFSLANLSTTMTGIAIGNNQISCFIPDGI 95 (278)
Q Consensus 16 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 95 (278)
+....+|+.+.+... ++.+.. .+|.+|.+|+.+.+..+ ++.--..+|.++ . |+.+.+..+ ++......|
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~------~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~-l~~i~~~~~-l~~I~~~aF 110 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGE------ANFNSCYNMTKVTVAST-VTSIGDGAFADT-K-LQSYTGMER-VKKFGDYVF 110 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECT------TTTTTCTTCCEEEECTT-CCEECTTTTTTC-C-CCEEEECTT-CCEECTTTT
T ss_pred cccccCCEEEEeCCC-ccChHH------HHhhCCCCCCEEEeCCc-ceEechhhhcCC-C-CceEECCce-eeEecccee
Confidence 334556777777543 444332 44778888888888644 432223444443 3 666666543 333333334
Q ss_pred cccCCcceecccccccch--hh--hccccEEEeecccccccCCCCCCCcccccEEEcccCc-------------------
Q 038788 96 ANLVNLNALGVEFNQLAV--TI--LKSLQMLFLHENILQGTIPCSLGNLTMLTQRLLEVND------------------- 152 (278)
Q Consensus 96 ~~l~~L~~L~l~~~~l~~--~~--~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~------------------- 152 (278)
.. .+|+.+.+..+.... .. ..+++.+.+..+ ++......+..+..++.+.+....
T Consensus 111 ~~-~~L~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 111 QG-TDLDDFEFPGATTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp TT-CCCSEEECCTTCCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred cc-CCcccccCCCccccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceec
Confidence 33 356666665432110 00 123333333222 111122233333333333322211
Q ss_pred ----------------ccccCCcCccCCCCCcEEEeecCcCcccCCCCcccccccceeEEccCCcCcccCchhhhcCCCC
Q 038788 153 ----------------LLGNIPPSIGNCKNLILLTTRKNKPSGTMPRQLPRIITLSVLLNLSDNLLSGHFPAEVGKLKNL 216 (278)
Q Consensus 153 ----------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~~L~l~~n~~~~~~~~~~~~~~~L 216 (278)
........+..+..++.+.+..+ +.......+..+..| +.+.+..+ +...-...+..+.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L-~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKAL-DEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSC-CEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccc-eEEEcCCC-ccEeCccccceeehh
Confidence 01112233445566666666443 233344556666777 77777655 333445567788899
Q ss_pred CEEEccCCeecccCCCccC-CCCccEEEccCCeecccCCccccCCCCCcEEECCCC
Q 038788 217 ISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFIGSIPSTLSSLKSITELDLSCN 271 (278)
Q Consensus 217 ~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 271 (278)
+.+.+..+ +.......+. |.+|+.+.+.++.+...-..+|.+|.+|+.+.+..+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 99988654 4445555555 899999999988777555678899999999999654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=6.2e-08 Score=71.53 Aligned_cols=81 Identities=9% Similarity=0.056 Sum_probs=64.5
Q ss_pred CCCcccccceeccccccCcccccEEecCCCC-CCCccCCCccccccccC----CCCccEEEeeccc-ccccCCchhhccc
Q 038788 1 MNTIRNIFSGKVSINFGGLQNLSWLNLGKNN-LGTWTTNDLHFITFLTN----CTKLGVLVLDANR-FGGALPFSLANLS 74 (278)
Q Consensus 1 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~----~~~L~~L~l~~~~-l~~~~~~~~~~~~ 74 (278)
||++++.|+...-..+..+++|++|++++|. +++. ....+.. +++|++|++++|. +++..-..+.+++
T Consensus 66 LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~------gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 66 IDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG------CLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp EEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH------HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred EeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH------HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 6899999999888889999999999999995 7763 3344554 3589999999995 8765555677776
Q ss_pred ccccEEEeecCe-ee
Q 038788 75 TTMTGIAIGNNQ-IS 88 (278)
Q Consensus 75 ~~L~~L~l~~~~-~~ 88 (278)
+ |++|++++|. ++
T Consensus 140 ~-L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 N-LKYLFLSDLPGVK 153 (176)
T ss_dssp T-CCEEEEESCTTCC
T ss_pred C-CCEEECCCCCCCC
Confidence 6 9999999985 44
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=2.8e-07 Score=73.03 Aligned_cols=79 Identities=30% Similarity=0.327 Sum_probs=51.5
Q ss_pred cccccceeEEccCCcCcc--cCchhhhcCCCCCEEEccCCeecccCCCccCCC--CccEEEccCCeecccCC-------c
Q 038788 187 RIITLSVLLNLSDNLLSG--HFPAEVGKLKNLISLDISSNMFSSEISTTLGCT--SLEYLCMQDNSFIGSIP-------S 255 (278)
Q Consensus 187 ~~~~L~~~L~l~~n~~~~--~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~~-------~ 255 (278)
.+++| +.|++++|.+++ .++..+..+++|+.|+|++|.+.+. .....+. +|++|++++|.+.+.++ .
T Consensus 168 ~l~~L-~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPEL-LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTC-CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCC-CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 35566 777888888775 3445566778888888888877754 1111122 77888888887775444 2
Q ss_pred cccCCCCCcEEE
Q 038788 256 TLSSLKSITELD 267 (278)
Q Consensus 256 ~~~~~~~L~~L~ 267 (278)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677777776
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.81 E-value=6.2e-06 Score=62.00 Aligned_cols=87 Identities=7% Similarity=0.046 Sum_probs=41.3
Q ss_pred cccccEEecCCC-CCCCccCCCccccccccCCCCccEEEeecccccccCCc----hhhcccccccEEEeecCeeeecC--
Q 038788 19 LQNLSWLNLGKN-NLGTWTTNDLHFITFLTNCTKLGVLVLDANRFGGALPF----SLANLSTTMTGIAIGNNQISCFI-- 91 (278)
Q Consensus 19 l~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~-- 91 (278)
-..|++|+++++ +|...... .+.+.++..+.|+.|+|++|.+++.... ++..... |++|+|+.|.|+...
T Consensus 40 n~~L~~L~L~~nn~igd~ga~--~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~t-L~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIR--SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS-LRVLNVESNFLTPELLA 116 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHH--HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSS-CCEEECCSSBCCHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHH--HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCc-cCeEecCCCcCCHHHHH
Confidence 345666666654 55432111 3344455556666666666666533222 2222333 666666666655321
Q ss_pred --CccccccCCcceecccc
Q 038788 92 --PDGIANLVNLNALGVEF 108 (278)
Q Consensus 92 --~~~l~~l~~L~~L~l~~ 108 (278)
.+.+..-+.|+.|++++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 12233334455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.72 E-value=6.3e-06 Score=61.93 Aligned_cols=111 Identities=11% Similarity=0.116 Sum_probs=65.4
Q ss_pred cCCCCCcEEEeecC-cCccc----CCCCcccccccceeEEccCCcCcc----cCchhhhcCCCCCEEEccCCeecccCCC
Q 038788 162 GNCKNLILLTTRKN-KPSGT----MPRQLPRIITLSVLLNLSDNLLSG----HFPAEVGKLKNLISLDISSNMFSSEIST 232 (278)
Q Consensus 162 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~~L~l~~n~~~~----~~~~~~~~~~~L~~L~L~~n~~~~~~~~ 232 (278)
.+.+.|++|+++++ .+... +...+.....| +.|++++|.+.+ .+...+...+.|+.|+|++|.+......
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L-~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHI-EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCC-CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCc-CEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 34456666766664 54322 22334445556 777777777763 3344555667788888888877753332
Q ss_pred c----cC-CCCccEEEccCC---eecc----cCCccccCCCCCcEEECCCCcc
Q 038788 233 T----LG-CTSLEYLCMQDN---SFIG----SIPSTLSSLKSITELDLSCNNL 273 (278)
Q Consensus 233 ~----~~-~~~L~~l~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~n~l 273 (278)
. +. .+.|++|+++++ .+.+ .+...+..-+.|++|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2 22 456788888754 3332 2444556667788888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.90 E-value=0.0011 Score=46.28 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=37.5
Q ss_pred EEEeeccccc-ccCCchhhcccccccEEEeecCeeeecCCccccccCCcceecccccccc
Q 038788 54 VLVLDANRFG-GALPFSLANLSTTMTGIAIGNNQISCFIPDGIANLVNLNALGVEFNQLA 112 (278)
Q Consensus 54 ~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 112 (278)
.++.+++.++ ..+|.. ++.+|++|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6666666664 345543 3444777777777777666666777777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.82 E-value=0.0028 Score=44.26 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=39.2
Q ss_pred eeEEccCCcCc-ccCchhhhcCCCCCEEEccCCeecccCCCccC-CCCccEEEccCCeec
Q 038788 193 VLLNLSDNLLS-GHFPAEVGKLKNLISLDISSNMFSSEISTTLG-CTSLEYLCMQDNSFI 250 (278)
Q Consensus 193 ~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~-~~~L~~l~l~~n~~~ 250 (278)
..++-++++++ ..+|..+ ..+|++|+|++|+++...+..+. +++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 34566777665 2445432 24688888888888877777666 788888888888765
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.41 E-value=12 Score=24.23 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=26.0
Q ss_pred ccceeccccccCcccccEEecCCCCCCCccCCCccccccccCCCCccEEEeec
Q 038788 7 IFSGKVSINFGGLQNLSWLNLGKNNLGTWTTNDLHFITFLTNCTKLGVLVLDA 59 (278)
Q Consensus 7 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 59 (278)
.++..-..+|..+..|+.+.+-.+ ++.+.. .+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~------~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYD------GMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCT------TSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcH------HHHhccCCccEEEEcC
Confidence 344444455666777777777554 332221 3466677777777754
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.16 E-value=19 Score=23.22 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=29.2
Q ss_pred cCCCCCCCcccccEEEcccCcccccCCcCccCCCCCcEEEeec
Q 038788 132 TIPCSLGNLTMLTQRLLEVNDLLGNIPPSIGNCKNLILLTTRK 174 (278)
Q Consensus 132 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 174 (278)
.-...|.++++|+++.+..+ ++.....+|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34456777888888888664 3434456778888888887765
Done!