Query 038790
Match_columns 139
No_of_seqs 115 out of 1423
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 04:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.7 7.4E-19 2.5E-23 108.1 3.1 67 41-109 8-74 (75)
2 2l0b_A E3 ubiquitin-protein li 99.7 3.8E-18 1.3E-22 108.7 6.4 75 32-108 15-90 (91)
3 2kiz_A E3 ubiquitin-protein li 99.7 3.2E-17 1.1E-21 99.0 5.3 57 52-110 10-66 (69)
4 2ep4_A Ring finger protein 24; 99.7 6E-17 2.1E-21 99.1 5.2 58 52-111 11-68 (74)
5 2ect_A Ring finger protein 126 99.7 5.8E-17 2E-21 100.1 5.1 60 52-113 11-70 (78)
6 1iym_A EL5; ring-H2 finger, ub 99.7 3.8E-17 1.3E-21 94.4 3.3 51 54-106 3-54 (55)
7 1v87_A Deltex protein 2; ring- 99.6 1.7E-16 6E-21 104.6 5.1 66 55-120 24-107 (114)
8 2ecl_A Ring-box protein 2; RNF 99.6 3.5E-16 1.2E-20 97.5 4.3 54 54-109 13-78 (81)
9 2ecm_A Ring finger and CHY zin 99.6 5.5E-16 1.9E-20 89.4 3.6 51 54-106 3-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.6 1E-15 3.4E-20 92.6 3.3 56 53-110 7-66 (71)
11 3dpl_R Ring-box protein 1; ubi 99.6 1.9E-15 6.6E-20 98.8 4.7 53 54-108 35-102 (106)
12 2ea6_A Ring finger protein 4; 99.6 2.1E-15 7.3E-20 90.6 3.8 54 52-107 11-68 (69)
13 2d8s_A Cellular modulator of i 99.5 5.3E-15 1.8E-19 92.0 4.8 58 52-110 11-73 (80)
14 2djb_A Polycomb group ring fin 99.5 5.2E-15 1.8E-19 90.0 4.6 58 52-113 11-68 (72)
15 2xeu_A Ring finger protein 4; 99.5 2E-15 6.8E-20 89.4 2.6 53 55-109 2-58 (64)
16 1chc_A Equine herpes virus-1 r 99.5 5E-15 1.7E-19 88.9 3.3 50 54-107 3-52 (68)
17 2ecn_A Ring finger protein 141 99.5 6.3E-15 2.1E-19 89.0 3.4 52 52-109 11-62 (70)
18 4a0k_B E3 ubiquitin-protein li 99.5 5.2E-15 1.8E-19 98.2 0.5 52 55-108 47-113 (117)
19 2ct2_A Tripartite motif protei 99.5 5.9E-14 2E-18 88.1 5.2 58 51-108 10-69 (88)
20 2d8t_A Dactylidin, ring finger 99.5 2.8E-14 9.5E-19 86.5 3.0 52 52-108 11-62 (71)
21 2ecy_A TNF receptor-associated 99.4 1E-13 3.5E-18 82.8 4.3 53 53-109 12-64 (66)
22 2yur_A Retinoblastoma-binding 99.4 1.7E-13 5.9E-18 83.7 4.7 53 52-107 11-64 (74)
23 2csy_A Zinc finger protein 183 99.4 1.8E-13 6.3E-18 84.8 4.5 50 52-106 11-60 (81)
24 3lrq_A E3 ubiquitin-protein li 99.4 7E-14 2.4E-18 90.3 2.6 55 54-112 20-75 (100)
25 2y43_A E3 ubiquitin-protein li 99.4 1.3E-13 4.5E-18 88.6 3.3 50 55-108 21-70 (99)
26 2ct0_A Non-SMC element 1 homol 99.4 2.9E-13 9.8E-18 82.8 4.6 55 53-109 12-66 (74)
27 4ap4_A E3 ubiquitin ligase RNF 99.4 1.5E-13 5.2E-18 92.0 3.5 55 54-110 5-63 (133)
28 2ckl_A Polycomb group ring fin 99.4 3.8E-13 1.3E-17 87.8 4.8 51 54-108 13-63 (108)
29 1g25_A CDK-activating kinase a 99.4 3.8E-13 1.3E-17 80.0 4.2 55 55-110 2-58 (65)
30 4ayc_A E3 ubiquitin-protein li 99.4 2.4E-13 8.2E-18 92.5 3.5 48 55-107 52-99 (138)
31 1t1h_A Gspef-atpub14, armadill 99.4 6.6E-13 2.3E-17 81.6 5.2 55 53-111 5-59 (78)
32 2ysl_A Tripartite motif-contai 99.4 5.9E-13 2E-17 80.7 4.6 55 52-109 16-71 (73)
33 2ecw_A Tripartite motif-contai 99.4 6.9E-13 2.4E-17 82.4 4.9 55 53-110 16-74 (85)
34 2egp_A Tripartite motif-contai 99.3 2.6E-13 9E-18 83.5 2.3 57 52-111 8-69 (79)
35 2ecv_A Tripartite motif-contai 99.3 8.3E-13 2.8E-17 82.0 3.4 56 53-111 16-75 (85)
36 3ztg_A E3 ubiquitin-protein li 99.3 2.2E-12 7.5E-17 81.7 5.1 52 52-106 9-61 (92)
37 2ckl_B Ubiquitin ligase protei 99.3 7.9E-13 2.7E-17 92.3 3.1 50 55-107 53-102 (165)
38 4ap4_A E3 ubiquitin ligase RNF 99.3 1E-12 3.5E-17 88.0 3.1 56 53-110 69-128 (133)
39 2ecj_A Tripartite motif-contai 99.3 3.3E-12 1.1E-16 73.9 4.1 47 52-101 11-58 (58)
40 1e4u_A Transcriptional repress 99.3 4.7E-12 1.6E-16 78.3 4.7 56 53-110 8-65 (78)
41 3fl2_A E3 ubiquitin-protein li 99.2 3.4E-12 1.2E-16 85.2 3.7 49 55-107 51-99 (124)
42 2ysj_A Tripartite motif-contai 99.2 6.1E-12 2.1E-16 74.2 4.3 47 52-101 16-63 (63)
43 3hct_A TNF receptor-associated 99.2 3.9E-12 1.3E-16 84.3 3.6 53 52-109 14-67 (118)
44 1jm7_A BRCA1, breast cancer ty 99.2 9E-12 3.1E-16 81.4 4.2 55 55-112 20-75 (112)
45 1rmd_A RAG1; V(D)J recombinati 99.2 8.8E-12 3E-16 82.2 3.6 52 55-110 22-73 (116)
46 1z6u_A NP95-like ring finger p 99.2 1.7E-11 5.7E-16 84.6 4.7 50 55-108 77-126 (150)
47 2kr4_A Ubiquitin conjugation f 99.2 2.2E-11 7.4E-16 76.3 4.4 52 53-109 11-62 (85)
48 2kre_A Ubiquitin conjugation f 99.2 2.7E-11 9.1E-16 78.2 4.5 53 53-110 26-78 (100)
49 1wgm_A Ubiquitin conjugation f 99.1 4.9E-11 1.7E-15 76.7 5.0 53 53-110 19-72 (98)
50 3l11_A E3 ubiquitin-protein li 99.1 5.8E-12 2E-16 82.9 -0.1 51 53-107 12-62 (115)
51 1vyx_A ORF K3, K3RING; zinc-bi 99.1 5.4E-11 1.8E-15 69.9 3.5 52 53-107 3-59 (60)
52 2vje_A E3 ubiquitin-protein li 99.1 4.1E-11 1.4E-15 71.2 2.7 49 54-106 6-56 (64)
53 3knv_A TNF receptor-associated 99.1 4.1E-11 1.4E-15 81.9 2.8 52 52-107 27-78 (141)
54 1bor_A Transcription factor PM 99.1 3.9E-11 1.3E-15 69.4 1.9 50 53-110 3-52 (56)
55 2y1n_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 91.2 4.4 51 55-109 331-381 (389)
56 1jm7_B BARD1, BRCA1-associated 99.0 2.8E-11 9.6E-16 80.0 0.6 48 55-108 21-68 (117)
57 2vje_B MDM4 protein; proto-onc 99.0 1E-10 3.5E-15 69.2 2.7 49 54-106 5-55 (63)
58 3k1l_B Fancl; UBC, ring, RWD, 99.0 7E-11 2.4E-15 90.7 1.8 57 53-109 305-375 (381)
59 3hcs_A TNF receptor-associated 99.0 1.9E-10 6.7E-15 80.4 3.8 55 52-110 14-68 (170)
60 2yu4_A E3 SUMO-protein ligase 99.0 4.5E-10 1.5E-14 71.5 3.7 55 53-109 4-65 (94)
61 2c2l_A CHIP, carboxy terminus 98.9 4.9E-10 1.7E-14 83.4 3.8 57 52-112 204-260 (281)
62 1wim_A KIAA0161 protein; ring 98.9 4.7E-10 1.6E-14 71.3 2.4 55 54-108 3-67 (94)
63 4ic3_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 68.9 1.4 44 55-107 23-67 (74)
64 3htk_C E3 SUMO-protein ligase 98.9 1.1E-09 3.7E-14 81.4 4.3 55 54-110 179-235 (267)
65 2f42_A STIP1 homology and U-bo 98.8 2.7E-09 9.3E-14 75.4 4.4 57 51-111 101-157 (179)
66 2ea5_A Cell growth regulator w 98.7 1.4E-08 4.8E-13 60.8 3.8 47 52-107 11-58 (68)
67 2ecg_A Baculoviral IAP repeat- 98.7 7.4E-09 2.5E-13 63.0 2.3 44 55-107 24-68 (75)
68 2bay_A PRE-mRNA splicing facto 98.7 1.5E-08 5.2E-13 59.4 3.2 53 56-112 3-55 (61)
69 2yho_A E3 ubiquitin-protein li 98.6 6.4E-09 2.2E-13 64.1 0.8 44 56-108 18-62 (79)
70 3vk6_A E3 ubiquitin-protein li 98.6 3.4E-08 1.2E-12 62.9 3.7 48 58-108 3-50 (101)
71 3t6p_A Baculoviral IAP repeat- 98.4 4.8E-08 1.6E-12 75.6 1.3 44 55-107 294-338 (345)
72 3nw0_A Non-structural maintena 98.4 2E-07 6.7E-12 68.7 3.4 54 55-110 179-232 (238)
73 2ko5_A Ring finger protein Z; 96.5 0.0016 5.6E-08 40.7 2.9 58 49-113 21-79 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0055 1.9E-07 38.5 3.1 35 55-89 2-36 (101)
75 2lri_C Autoimmune regulator; Z 95.2 0.016 5.5E-07 34.0 2.9 50 53-105 9-60 (66)
76 1we9_A PHD finger family prote 92.8 0.038 1.3E-06 31.8 1.2 52 53-104 3-58 (64)
77 2k16_A Transcription initiatio 92.5 0.039 1.3E-06 32.8 1.1 54 53-107 15-71 (75)
78 3m62_A Ubiquitin conjugation f 90.8 0.25 8.5E-06 42.8 4.6 56 52-112 887-943 (968)
79 1wep_A PHF8; structural genomi 90.8 0.27 9.1E-06 29.5 3.5 55 54-109 10-68 (79)
80 2yt5_A Metal-response element- 90.6 0.053 1.8E-06 31.4 0.2 53 53-105 3-62 (66)
81 2l5u_A Chromodomain-helicase-D 89.7 0.23 7.8E-06 28.3 2.4 48 53-103 8-57 (61)
82 3lqh_A Histone-lysine N-methyl 89.5 0.12 4E-06 36.3 1.3 51 56-106 2-65 (183)
83 2vpb_A Hpygo1, pygopus homolog 89.2 0.34 1.2E-05 28.1 2.9 36 53-88 5-42 (65)
84 1fp0_A KAP-1 corepressor; PHD 89.2 0.2 6.7E-06 31.0 2.0 54 50-106 19-74 (88)
85 2ku3_A Bromodomain-containing 88.9 0.18 6.3E-06 29.7 1.6 51 53-103 13-65 (71)
86 2l43_A N-teminal domain from h 88.8 0.22 7.4E-06 30.7 2.0 53 53-105 22-76 (88)
87 2xb1_A Pygopus homolog 2, B-ce 88.7 0.088 3E-06 33.6 0.1 52 56-107 3-64 (105)
88 1f62_A Transcription factor WS 87.8 0.25 8.5E-06 26.9 1.6 46 58-103 2-49 (51)
89 2ysm_A Myeloid/lymphoid or mix 86.3 0.2 6.9E-06 31.9 0.8 50 53-102 4-55 (111)
90 1weo_A Cellulose synthase, cat 86.0 1.2 4E-05 27.5 4.1 52 54-106 14-69 (93)
91 2yql_A PHD finger protein 21A; 85.5 0.12 4E-06 29.0 -0.6 48 53-103 6-55 (56)
92 3u5n_A E3 ubiquitin-protein li 85.4 0.17 6E-06 35.8 0.2 49 53-105 4-55 (207)
93 1mm2_A MI2-beta; PHD, zinc fin 84.8 0.18 6.2E-06 28.8 -0.0 49 53-104 6-56 (61)
94 1wee_A PHD finger family prote 84.5 0.16 5.6E-06 29.9 -0.3 55 53-108 13-70 (72)
95 2puy_A PHD finger protein 21A; 84.4 0.12 4.1E-06 29.3 -0.9 50 54-106 3-54 (60)
96 3o36_A Transcription intermedi 84.4 0.27 9.1E-06 34.1 0.7 49 55-106 3-53 (184)
97 1wil_A KIAA1045 protein; ring 84.2 0.83 2.8E-05 27.9 2.7 34 52-89 11-47 (89)
98 2ri7_A Nucleosome-remodeling f 83.5 0.32 1.1E-05 33.3 0.9 50 54-104 6-59 (174)
99 1wem_A Death associated transc 83.0 0.44 1.5E-05 28.2 1.2 51 56-108 16-74 (76)
100 2lbm_A Transcriptional regulat 82.8 1.9 6.5E-05 28.9 4.4 48 52-103 59-116 (142)
101 1wev_A Riken cDNA 1110020M19; 82.7 0.23 8E-06 30.5 -0.1 52 55-106 15-74 (88)
102 3i2d_A E3 SUMO-protein ligase 81.7 1.7 6E-05 33.6 4.4 49 56-106 249-299 (371)
103 1xwh_A Autoimmune regulator; P 81.5 0.42 1.4E-05 27.6 0.7 48 53-103 5-54 (66)
104 2lv9_A Histone-lysine N-methyl 80.8 0.58 2E-05 29.2 1.2 48 55-103 27-75 (98)
105 2d8v_A Zinc finger FYVE domain 80.7 1.2 4E-05 25.9 2.3 34 52-89 4-38 (67)
106 4fo9_A E3 SUMO-protein ligase 80.2 2.2 7.4E-05 33.0 4.4 49 56-106 215-265 (360)
107 2e6r_A Jumonji/ARID domain-con 79.5 0.18 6.3E-06 31.2 -1.4 51 53-104 13-66 (92)
108 3v43_A Histone acetyltransfera 78.9 3.4 0.00012 26.1 4.5 47 55-102 4-62 (112)
109 3mjh_B Early endosome antigen 78.3 0.53 1.8E-05 23.7 0.4 13 55-67 4-16 (34)
110 1zfo_A LAsp-1; LIM domain, zin 76.6 0.66 2.3E-05 22.6 0.4 27 57-85 4-30 (31)
111 1z2q_A LM5-1; membrane protein 76.5 2.2 7.5E-05 25.7 2.9 36 54-89 19-55 (84)
112 2yw8_A RUN and FYVE domain-con 75.7 1.9 6.6E-05 25.8 2.5 35 54-88 17-52 (82)
113 1joc_A EEA1, early endosomal a 74.8 1.8 6E-05 28.2 2.2 34 54-87 67-101 (125)
114 1wew_A DNA-binding family prot 74.2 1.5 5.1E-05 26.0 1.7 52 54-106 14-74 (78)
115 3v43_A Histone acetyltransfera 73.7 0.84 2.9E-05 29.1 0.5 48 56-103 61-111 (112)
116 1wfk_A Zinc finger, FYVE domai 73.4 2.8 9.7E-05 25.5 2.8 54 54-107 7-66 (88)
117 2e6s_A E3 ubiquitin-protein li 73.0 0.6 2.1E-05 27.9 -0.3 46 58-103 28-76 (77)
118 3t7l_A Zinc finger FYVE domain 72.7 2.2 7.6E-05 26.0 2.2 52 54-105 18-74 (90)
119 3asl_A E3 ubiquitin-protein li 72.4 0.62 2.1E-05 27.3 -0.4 45 58-103 20-68 (70)
120 1vfy_A Phosphatidylinositol-3- 72.3 2.6 8.8E-05 24.6 2.4 31 57-87 12-43 (73)
121 1wen_A Inhibitor of growth fam 72.0 2.4 8.1E-05 24.8 2.1 47 54-105 14-66 (71)
122 1y02_A CARP2, FYVE-ring finger 72.0 0.54 1.9E-05 30.6 -0.8 49 54-104 17-66 (120)
123 1x4u_A Zinc finger, FYVE domai 71.2 2.8 9.5E-05 25.2 2.4 34 54-87 12-46 (84)
124 2co8_A NEDD9 interacting prote 70.4 3.8 0.00013 24.1 2.9 46 54-111 13-58 (82)
125 3kqi_A GRC5, PHD finger protei 69.4 2.3 7.8E-05 25.0 1.7 52 59-110 12-67 (75)
126 2ro1_A Transcription intermedi 68.3 0.88 3E-05 31.8 -0.4 46 56-104 2-49 (189)
127 3kv5_D JMJC domain-containing 68.1 1.6 5.5E-05 35.0 1.0 53 54-107 35-91 (488)
128 4gne_A Histone-lysine N-methyl 67.5 4.9 0.00017 25.5 3.0 48 52-105 11-63 (107)
129 3shb_A E3 ubiquitin-protein li 67.0 0.67 2.3E-05 27.7 -1.1 45 58-103 28-76 (77)
130 1dvp_A HRS, hepatocyte growth 66.7 2.7 9.1E-05 29.8 1.9 33 55-87 160-193 (220)
131 2cs3_A Protein C14ORF4, MY039 66.5 13 0.00045 22.4 4.6 38 53-91 12-51 (93)
132 3ql9_A Transcriptional regulat 66.2 6.8 0.00023 25.7 3.6 47 53-103 54-110 (129)
133 2ysm_A Myeloid/lymphoid or mix 65.6 1.3 4.5E-05 28.0 0.0 47 58-104 56-104 (111)
134 2cu8_A Cysteine-rich protein 2 65.5 8.7 0.0003 21.9 3.8 42 56-109 9-50 (76)
135 1weu_A Inhibitor of growth fam 65.0 2.3 7.7E-05 26.3 1.1 48 54-106 34-87 (91)
136 3ask_A E3 ubiquitin-protein li 64.6 1.4 4.9E-05 31.8 0.1 45 58-103 176-224 (226)
137 2kwj_A Zinc finger protein DPF 63.8 0.64 2.2E-05 29.8 -1.7 49 58-106 60-110 (114)
138 3zyq_A Hepatocyte growth facto 62.9 3.5 0.00012 29.5 1.9 34 55-88 163-197 (226)
139 2zet_C Melanophilin; complex, 61.2 4.4 0.00015 27.4 2.0 49 54-103 66-116 (153)
140 2jvx_A NF-kappa-B essential mo 59.7 1.2 4.1E-05 21.4 -0.7 14 95-108 3-16 (28)
141 1zbd_B Rabphilin-3A; G protein 59.4 4.8 0.00016 26.5 1.9 32 54-85 53-86 (134)
142 2dj7_A Actin-binding LIM prote 58.3 11 0.00039 21.9 3.4 42 54-107 13-54 (80)
143 1iml_A CRIP, cysteine rich int 57.8 5.4 0.00018 22.9 1.8 39 58-108 2-40 (76)
144 2kgg_A Histone demethylase jar 57.1 4.8 0.00016 21.7 1.4 45 58-102 4-52 (52)
145 1x68_A FHL5 protein; four-and- 55.5 10 0.00035 21.7 2.8 42 56-108 5-48 (76)
146 2vnf_A ING 4, P29ING4, inhibit 54.7 2.7 9.3E-05 23.6 0.1 44 55-103 9-58 (60)
147 1a7i_A QCRP2 (LIM1); LIM domai 54.4 7.9 0.00027 22.4 2.2 42 56-109 7-48 (81)
148 2o35_A Hypothetical protein DU 54.2 5.3 0.00018 25.1 1.4 12 80-91 42-53 (105)
149 3fyb_A Protein of unknown func 53.8 5.4 0.00019 25.0 1.4 12 80-91 41-52 (104)
150 3a1b_A DNA (cytosine-5)-methyl 53.2 16 0.00054 24.8 3.7 35 53-91 76-113 (159)
151 3mpx_A FYVE, rhogef and PH dom 52.6 2.9 0.0001 32.3 0.0 51 54-104 373-429 (434)
152 1z60_A TFIIH basal transcripti 51.1 7.7 0.00026 21.9 1.6 43 57-101 16-58 (59)
153 3o70_A PHD finger protein 13; 50.4 9 0.00031 22.0 1.9 50 52-103 15-66 (68)
154 1nyp_A Pinch protein; LIM doma 49.2 13 0.00046 20.4 2.5 40 56-108 5-44 (66)
155 2dar_A PDZ and LIM domain prot 48.9 24 0.00083 20.7 3.8 43 54-109 23-65 (90)
156 2cor_A Pinch protein; LIM doma 48.6 16 0.00055 21.1 2.9 43 53-108 12-54 (79)
157 2d8x_A Protein pinch; LIM doma 47.5 23 0.00079 19.6 3.4 41 55-108 4-44 (70)
158 1x6a_A LIMK-2, LIM domain kina 46.0 21 0.00073 20.4 3.2 40 56-108 15-54 (81)
159 1g47_A Pinch protein; LIM doma 45.8 22 0.00075 20.0 3.2 45 54-109 9-53 (77)
160 2d8y_A Eplin protein; LIM doma 45.0 31 0.0011 20.3 3.9 43 55-109 14-56 (91)
161 1wyh_A SLIM 2, skeletal muscle 44.7 28 0.00096 19.3 3.5 43 56-109 5-47 (72)
162 1x61_A Thyroid receptor intera 44.6 34 0.0012 19.0 3.9 42 55-107 4-45 (72)
163 3c6w_A P28ING5, inhibitor of g 44.4 2.9 9.9E-05 23.4 -0.9 45 54-103 7-57 (59)
164 2cur_A Skeletal muscle LIM-pro 43.6 28 0.00097 19.1 3.4 40 56-108 5-44 (69)
165 2iyb_E Testin, TESS, TES; LIM 43.0 18 0.00061 19.9 2.4 41 57-109 3-46 (65)
166 2jny_A Uncharacterized BCR; st 42.3 3.7 0.00013 23.8 -0.7 19 87-107 4-22 (67)
167 2jne_A Hypothetical protein YF 42.0 9.7 0.00033 23.8 1.2 40 56-106 32-72 (101)
168 1x4k_A Skeletal muscle LIM-pro 41.9 21 0.00073 19.8 2.7 42 56-108 5-46 (72)
169 1l8d_A DNA double-strand break 41.8 5.6 0.00019 24.9 0.1 13 95-107 47-59 (112)
170 2d8z_A Four and A half LIM dom 41.7 33 0.0011 18.9 3.5 40 56-108 5-44 (70)
171 1v6g_A Actin binding LIM prote 40.8 26 0.00089 20.0 3.0 43 56-111 15-57 (81)
172 2g6q_A Inhibitor of growth pro 40.5 3.7 0.00013 23.2 -0.9 44 55-103 10-59 (62)
173 2pk7_A Uncharacterized protein 40.5 4.3 0.00015 23.6 -0.6 14 94-107 7-20 (69)
174 2cup_A Skeletal muscle LIM-pro 39.2 31 0.0011 20.5 3.3 48 55-108 32-79 (101)
175 3kv4_A PHD finger protein 8; e 39.0 15 0.00051 29.1 2.1 51 58-108 6-60 (447)
176 1x4l_A Skeletal muscle LIM-pro 38.6 50 0.0017 18.2 4.1 43 55-108 4-48 (72)
177 2pv0_B DNA (cytosine-5)-methyl 37.5 29 0.00099 27.0 3.5 34 54-91 91-127 (386)
178 2xjy_A Rhombotin-2; oncoprotei 37.2 35 0.0012 21.4 3.4 51 55-108 28-79 (131)
179 1x63_A Skeletal muscle LIM-pro 37.2 36 0.0012 19.4 3.2 43 56-109 15-57 (82)
180 1x4i_A Inhibitor of growth pro 37.0 7.6 0.00026 22.5 0.1 49 55-106 5-57 (70)
181 2dlo_A Thyroid receptor-intera 35.4 38 0.0013 19.3 3.2 42 55-109 14-55 (81)
182 3vhs_A ATPase wrnip1; zinc fin 35.4 9.2 0.00031 17.8 0.2 15 94-108 5-19 (29)
183 1wig_A KIAA1808 protein; LIM d 35.3 42 0.0014 18.8 3.3 50 56-118 5-54 (73)
184 1lv3_A Hypothetical protein YA 35.3 8.9 0.0003 22.3 0.2 12 95-106 9-20 (68)
185 2xqn_T Testin, TESS; metal-bin 35.2 27 0.00093 21.8 2.6 60 54-119 28-88 (126)
186 2jrp_A Putative cytoplasmic pr 35.0 20 0.00069 21.5 1.8 40 57-107 3-43 (81)
187 2gmg_A Hypothetical protein PF 34.2 6 0.0002 25.0 -0.7 23 76-105 72-94 (105)
188 3f6q_B LIM and senescent cell 33.8 49 0.0017 18.0 3.4 43 55-108 10-52 (72)
189 1x3h_A Leupaxin; paxillin fami 32.6 45 0.0015 18.8 3.1 41 56-109 15-55 (80)
190 3pg6_A E3 ubiquitin-protein li 32.2 26 0.0009 23.7 2.2 39 95-134 12-50 (159)
191 2jr6_A UPF0434 protein NMA0874 32.1 3.9 0.00013 23.7 -1.7 14 94-107 7-20 (68)
192 2egq_A FHL1 protein; LIM domai 31.6 46 0.0016 18.6 3.0 41 56-108 15-59 (77)
193 1m3v_A FLIN4, fusion of the LI 31.1 39 0.0013 21.1 2.8 51 56-109 32-83 (122)
194 2hf1_A Tetraacyldisaccharide-1 29.5 4 0.00014 23.7 -2.0 14 94-107 7-20 (68)
195 1x64_A Alpha-actinin-2 associa 29.3 67 0.0023 18.6 3.6 43 54-109 23-65 (89)
196 1b8t_A Protein (CRP1); LIM dom 28.7 34 0.0012 23.3 2.4 42 56-109 115-156 (192)
197 2lq6_A Bromodomain-containing 28.2 20 0.00069 21.6 1.0 32 56-88 17-50 (87)
198 2js4_A UPF0434 protein BB2007; 28.1 4.5 0.00015 23.6 -1.9 14 94-107 7-20 (70)
199 2jmi_A Protein YNG1, ING1 homo 28.0 6.5 0.00022 24.1 -1.3 46 53-103 23-75 (90)
200 2ehe_A Four and A half LIM dom 28.0 44 0.0015 19.0 2.5 42 56-108 15-56 (82)
201 3ihp_A Ubiquitin carboxyl-term 26.2 22 0.00075 30.4 1.2 27 75-105 174-200 (854)
202 2l4z_A DNA endonuclease RBBP8, 25.6 79 0.0027 19.9 3.6 39 56-106 61-99 (123)
203 1wd2_A Ariadne-1 protein homol 25.5 19 0.00065 20.1 0.5 14 94-107 5-18 (60)
204 2ffw_A Midline-1; B-BOX, ring 25.0 73 0.0025 18.4 3.1 36 54-89 28-63 (78)
205 2ctu_A Zinc finger protein 483 24.8 26 0.0009 18.7 1.0 39 55-111 17-55 (73)
206 2l3k_A Rhombotin-2, linker, LI 24.8 60 0.002 20.2 2.9 35 55-90 35-69 (123)
207 2lcq_A Putative toxin VAPC6; P 23.4 24 0.00083 23.5 0.8 23 75-105 136-158 (165)
208 2jmo_A Parkin; IBR, E3 ligase, 23.0 5.7 0.00019 23.5 -2.2 14 76-89 55-68 (80)
209 3pwf_A Rubrerythrin; non heme 22.8 45 0.0015 22.6 2.1 21 75-104 142-162 (170)
210 1loi_A Cyclic 3',5'-AMP specif 22.7 3.4 0.00012 18.7 -2.4 12 80-91 6-17 (26)
211 3mkr_B Coatomer subunit alpha; 21.6 97 0.0033 23.3 3.8 43 53-103 259-302 (320)
212 1x62_A C-terminal LIM domain p 21.3 58 0.002 18.4 2.1 41 54-107 13-53 (79)
213 2k5r_A Uncharacterized protein 21.1 11 0.00037 23.5 -1.2 15 94-108 7-21 (97)
214 1j2o_A FLIN2, fusion of rhombo 20.8 93 0.0032 19.0 3.2 36 55-91 29-65 (114)
215 1rut_X Flinc4, fusion protein 20.5 62 0.0021 21.8 2.4 27 58-85 71-97 (188)
216 2a20_A Regulating synaptic mem 20.5 78 0.0027 17.8 2.3 14 52-65 5-18 (62)
217 1q90_L Cytochrome B6F complex 20.3 90 0.0031 15.2 2.4 18 2-19 5-22 (32)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.4e-19 Score=108.05 Aligned_cols=67 Identities=33% Similarity=0.766 Sum_probs=55.1
Q ss_pred hhhhccccccCCCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 41 ELLTVGRYERNNDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
.++...........++..|+||++++..++.++.++|+|.||..||..|++ .+.+||+||+++.+..
T Consensus 8 ~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~--~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 8 QLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK--ANRTCPICRADSGPSS 74 (75)
T ss_dssp SCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH--HCSSCTTTCCCCCCCC
T ss_pred hCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH--cCCcCcCcCCcCCCCC
Confidence 344444444445567889999999999888888999999999999999998 7889999999887754
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=108.73 Aligned_cols=75 Identities=27% Similarity=0.588 Sum_probs=58.9
Q ss_pred CCCChhhhhhhhhccccc-cCCCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 32 HGVPAEIGEELLTVGRYE-RNNDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
.+......+.++...... .....++..|+||++.|..++.+..++|+|.||..||..|+. .+.+||+||+.+.+.
T Consensus 15 ~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 15 PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ--KSGTCPVCRCMFPPP 90 (91)
T ss_dssp CCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT--TTCBCTTTCCBSSCC
T ss_pred CCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH--cCCcCcCcCccCCCC
Confidence 444555555565554442 233456788999999999888888899999999999999998 788999999988653
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=99.01 Aligned_cols=57 Identities=39% Similarity=0.994 Sum_probs=49.6
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
....+..|+||++.+..++.+..++|+|.||..||..|+. .+.+||+||..+.....
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI--TNKKCPICRVDIEAQLP 66 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHH--HCSBCTTTCSBSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHH--cCCCCcCcCccccCcCC
Confidence 3456778999999998888888899999999999999998 77899999998876544
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6e-17 Score=99.06 Aligned_cols=58 Identities=34% Similarity=0.667 Sum_probs=49.8
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAV 111 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~ 111 (139)
....+..|+||++.+..+..+..++|+|.||..||..|++ .+.+||+||+++......
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE--VRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH--HCSBCTTTCCBCSSCCSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH--cCCcCCCcCccccccccc
Confidence 3456788999999999888888889999999999999998 677999999988654443
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=5.8e-17 Score=100.09 Aligned_cols=60 Identities=32% Similarity=0.847 Sum_probs=51.8
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAVVE 113 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~~~ 113 (139)
....+.+|+||++.|..++.+..++|+|.||..||..|++ .+.+||+||+.+.......+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE--QHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT--TTCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH--cCCcCcCcCCccCCcccCCC
Confidence 3456789999999999888888899999999999999998 78999999999877655544
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.66 E-value=3.8e-17 Score=94.42 Aligned_cols=51 Identities=55% Similarity=1.125 Sum_probs=45.7
Q ss_pred CCCcccccccccccCCCeeEEcC-CCCcccHHHHHHHHccCCcccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELR-CDHIFHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~-C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
+++.+|+||++++..++.+..++ |+|.||..||.+|++ .+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG--SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT--TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHH--cCCcCcCCCCEeE
Confidence 45778999999999888888887 999999999999998 7899999998764
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.64 E-value=1.7e-16 Score=104.59 Aligned_cols=66 Identities=20% Similarity=0.439 Sum_probs=52.3
Q ss_pred CCcccccccccccCCC---------------eeEEcCCCCcccHHHHHHHHcc---CCcccccccccccccCcccccCCc
Q 038790 55 EAVECAVCLCEIEEGE---------------EIRELRCDHIFHRVCLDQWVGL---FRRVTCPLCRDFLDSRRAVVENGI 116 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~---------------~~~~l~C~H~fh~~Ci~~Wl~~---~~~~~CP~Cr~~~~~~~~~~~~~~ 116 (139)
.+.+|+||+++|..+. .+..++|+|.||..||..|+.. ..+.+||+||+.+......+..|.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~ 103 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK 103 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCe
Confidence 4578999999996543 3447799999999999999942 257899999999988877777776
Q ss_pred eEEE
Q 038790 117 EILV 120 (139)
Q Consensus 117 ~~~~ 120 (139)
+...
T Consensus 104 m~~~ 107 (114)
T 1v87_A 104 MEVF 107 (114)
T ss_dssp CCCS
T ss_pred EEEE
Confidence 5543
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-16 Score=97.55 Aligned_cols=54 Identities=30% Similarity=0.759 Sum_probs=42.9
Q ss_pred CCCcccccccccccC-----------CCeeEEc-CCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 54 NEAVECAVCLCEIEE-----------GEEIREL-RCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~-----------~~~~~~l-~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
.++..|+||+++|.. ++.++.+ +|+|.||..||++|++ .+.+||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK--QNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT--TCCBCTTTCCBCCEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH--hCCCCCCcCCCcchhh
Confidence 356779999988854 3434455 6999999999999998 7889999999886543
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.59 E-value=5.5e-16 Score=89.39 Aligned_cols=51 Identities=27% Similarity=0.701 Sum_probs=43.4
Q ss_pred CCCcccccccccccCC-CeeEEcCCCCcccHHHHHHHHccCCcccccccccccc
Q 038790 54 NEAVECAVCLCEIEEG-EEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~-~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
.++.+|+||++.+..+ +.+..++|+|.||..||..|+. .+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK--EGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH--HTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH--cCCcCCCCCCcCC
Confidence 4577899999999654 3566789999999999999998 6799999998764
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.57 E-value=1e-15 Score=92.64 Aligned_cols=56 Identities=29% Similarity=0.629 Sum_probs=46.8
Q ss_pred CCCCcccccccccccCC----CeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 53 DNEAVECAVCLCEIEEG----EEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
..++..|+||++.+... +.+..++|+|.||..||..|++ .+.+||+||.++.....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHKRY 66 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH--cCCCCCCCCCccChhhe
Confidence 45678899999998752 4456789999999999999998 77899999998876543
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.57 E-value=1.9e-15 Score=98.80 Aligned_cols=53 Identities=26% Similarity=0.535 Sum_probs=44.1
Q ss_pred CCCcccccccccccCC---------------CeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 54 NEAVECAVCLCEIEEG---------------EEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~---------------~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
.++..|+||++.|... ..+..++|+|.||..||.+||. .+.+||+||+.+..+
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEFQ 102 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT--TCSBCSSSCSBCCEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH--cCCcCcCCCCcceee
Confidence 3577899999998754 1356679999999999999999 899999999987543
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-15 Score=90.57 Aligned_cols=54 Identities=28% Similarity=0.623 Sum_probs=45.2
Q ss_pred CCCCCcccccccccccCC----CeeEEcCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 52 NDNEAVECAVCLCEIEEG----EEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
...+...|+||++.+... ..+..++|+|.||..||..|++ .+.+||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH--HCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH--cCCCCCCCCCccCc
Confidence 345678899999998753 3346789999999999999998 78899999998764
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5.3e-15 Score=92.03 Aligned_cols=58 Identities=24% Similarity=0.602 Sum_probs=46.6
Q ss_pred CCCCCcccccccccccCCCeeEEcCCC-----CcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCD-----HIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~-----H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
...++..|.||++++..++.+ ++||+ |.||..||++|+......+||+||..+.....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 345577899999999877765 58996 99999999999983334699999998876543
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5.2e-15 Score=90.03 Aligned_cols=58 Identities=16% Similarity=0.386 Sum_probs=47.6
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAVVE 113 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~~~ 113 (139)
...+...|+||++.+. +.+..++|+|.||..||..|+. .+.+||+||+++........
T Consensus 11 ~~~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 11 ELTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFY--YSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCGGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHH--HCSSCTTTCCCCCSSCSCCC
T ss_pred hcCCCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHH--cCCcCCCcCcccCccccccc
Confidence 3456788999999987 4555559999999999999998 78999999999877655443
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.54 E-value=2e-15 Score=89.42 Aligned_cols=53 Identities=30% Similarity=0.674 Sum_probs=44.8
Q ss_pred CCcccccccccccCC----CeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 55 EAVECAVCLCEIEEG----EEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
++.+|+||++.+... +.+..++|+|.||..||.+|++ .+.+||+||+++....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH--HCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH--cCCCCCCCCccCCccc
Confidence 467899999998742 4456789999999999999998 7889999999887654
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.52 E-value=5e-15 Score=88.94 Aligned_cols=50 Identities=34% Similarity=0.779 Sum_probs=43.1
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
..+..|+||++.+. +.+..++|+|.||..||..|++ .+.+||+||.++..
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIR--QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHH--HSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHh--CcCcCcCCChhhHh
Confidence 34678999999987 4456789999999999999998 78899999998864
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.3e-15 Score=89.03 Aligned_cols=52 Identities=29% Similarity=0.759 Sum_probs=44.9
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
...+...|+||++.+.. ..++|+|.||..||..|+. .+.+||+||+++....
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSD--RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSC--CCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHH--CcCcCCCcCCcccCCC
Confidence 34567889999999874 5789999999999999998 8999999999887544
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.47 E-value=5.2e-15 Score=98.20 Aligned_cols=52 Identities=29% Similarity=0.605 Sum_probs=1.2
Q ss_pred CCcccccccccccCC-------------C--eeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 55 EAVECAVCLCEIEEG-------------E--EIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~-------------~--~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
.+..|+||+++|... + .+..++|+|.||..||.+||. .+.+||+||+++..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~--~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK--TRQVCPLDNREWEFQ 113 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH--cCCcCCCCCCeeeee
Confidence 467899999999742 2 223358999999999999999 789999999987543
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.9e-14 Score=88.07 Aligned_cols=58 Identities=26% Similarity=0.617 Sum_probs=46.5
Q ss_pred CCCCCCcccccccccccCCCe-eEEcCCCCcccHHHHHHHHccC-CcccccccccccccC
Q 038790 51 NNDNEAVECAVCLCEIEEGEE-IRELRCDHIFHRVCLDQWVGLF-RRVTCPLCRDFLDSR 108 (139)
Q Consensus 51 ~~~~~~~~C~ICl~~~~~~~~-~~~l~C~H~fh~~Ci~~Wl~~~-~~~~CP~Cr~~~~~~ 108 (139)
+...+...|+||++.|..++. ...++|+|.||..||..|++.. ....||+||+.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 344567889999999987554 5677999999999999999821 248999999987654
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.8e-14 Score=86.52 Aligned_cols=52 Identities=27% Similarity=0.536 Sum_probs=43.5
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
...++..|+||++.+. +. ..++|+|.||..||..|+. .+.+||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~--~~-~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCV--HP-VSLPCKHVFCYLCVKGASW--LGKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCS--SE-EEETTTEEEEHHHHHHCTT--CSSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccC--CC-EEccCCCHHHHHHHHHHHH--CCCcCcCcCchhCHh
Confidence 3456788999999986 33 4569999999999999998 789999999988653
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=82.78 Aligned_cols=53 Identities=15% Similarity=0.441 Sum_probs=43.6
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
..+...|+||++.+... + .++|||.||..||..|+. ..+..||+||+++....
T Consensus 12 ~~~~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP--K-QTECGHRFCESCMAALLS-SSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCCEECTTTCCEESSC--C-CCSSSCCCCHHHHHHHHT-TSSCCCTTTCCCCCTTT
T ss_pred CCcCCCCCCCChHhcCe--e-ECCCCCHHHHHHHHHHHH-hCcCCCCCCCcCCChhh
Confidence 45678899999998743 3 379999999999999995 26789999999887653
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-13 Score=83.71 Aligned_cols=53 Identities=17% Similarity=0.376 Sum_probs=42.2
Q ss_pred CCCCCcccccccccccCCCeeEEcC-CCCcccHHHHHHHHccCCccccccccccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELR-CDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~-C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
...++..|+||++.|. +.+ .++ |+|.||..||..|+.......||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~--~p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 11 PIPDELLCLICKDIMT--DAV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CSCGGGSCSSSCCCCT--TCE-ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cCCCCCCCcCCChHHh--CCe-EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4456788999999988 443 478 9999999999999983234799999997543
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.8e-13 Score=84.84 Aligned_cols=50 Identities=16% Similarity=0.474 Sum_probs=42.7
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
.......|+||++.+. +.+ .++|+|.||..||..|+. ....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~--~p~-~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQ--NPV-VTKCRHYFCESCALEHFR--ATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCC--SEE-ECTTSCEEEHHHHHHHHH--HCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhc--Cee-EccCCCHhHHHHHHHHHH--CCCcCCCcCcccc
Confidence 3445778999999986 443 589999999999999998 7889999999885
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=7e-14 Score=90.29 Aligned_cols=55 Identities=24% Similarity=0.631 Sum_probs=44.9
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCc-ccccccccccccCcccc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRR-VTCPLCRDFLDSRRAVV 112 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~-~~CP~Cr~~~~~~~~~~ 112 (139)
.+...|+||++.+. +.+..++|||.||..||..|+. .. .+||+||.++.......
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 20 AEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLT--EQRAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHH--HTCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCccCCcccc--CccccCCCCChhhHHHHHHHHH--HCcCCCCCCCCcCCHHHhHh
Confidence 35778999999987 5555489999999999999998 44 79999999986654433
No 25
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=88.60 Aligned_cols=50 Identities=16% Similarity=0.589 Sum_probs=42.8
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
+...|+||++.+. +.+..++|||.||..||..|+. .+.+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLS--YKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhC--CcCEECCCCCHhhHHHHHHHHH--CCCCCCCCCCcCChh
Confidence 4678999999987 4554459999999999999998 789999999988763
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=2.9e-13 Score=82.82 Aligned_cols=55 Identities=18% Similarity=0.490 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
...-.+|+||.+.+..++.. ..|+|.||..||.+||++..+.+||+||+++....
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred cCCCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 34567899999999866533 38999999999999998434489999999876443
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.39 E-value=1.5e-13 Score=92.04 Aligned_cols=55 Identities=29% Similarity=0.645 Sum_probs=46.2
Q ss_pred CCCcccccccccccCC----CeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 54 NEAVECAVCLCEIEEG----EEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
.++..|+||++.|... +.+..++|||.||..||.+|++ .+.+||+||+.+.....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHT--TCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHH--hCCCCCCCCCcCccccc
Confidence 4578899999998743 4457789999999999999998 78899999998876544
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.38 E-value=3.8e-13 Score=87.80 Aligned_cols=51 Identities=20% Similarity=0.541 Sum_probs=44.2
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
.++..|+||++.+. +.+..++|||.||..||..|+. .+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLE--TSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHT--SCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHH--hCCcCcCCCcccccc
Confidence 45778999999987 5665569999999999999998 779999999988765
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=3.8e-13 Score=80.02 Aligned_cols=55 Identities=18% Similarity=0.348 Sum_probs=43.0
Q ss_pred CCcccccccc-cccCCCe-eEEcCCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 55 EAVECAVCLC-EIEEGEE-IRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 55 ~~~~C~ICl~-~~~~~~~-~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
++..|+||++ .+..... ...++|||.||..||..|+. +....||+||+.+.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-RGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH-TTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH-cCCCcCCCCCCccccccc
Confidence 4678999999 6765433 24579999999999999986 256789999998876443
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.37 E-value=2.4e-13 Score=92.53 Aligned_cols=48 Identities=31% Similarity=0.893 Sum_probs=41.3
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
++..|+||++.|. +. ..++|||.||..||..|+. .+.+||+||.++..
T Consensus 52 ~~~~C~iC~~~~~--~~-~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFI--EA-VTLNCAHSFCSYCINEWMK--RKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCS--SE-EEETTSCEEEHHHHHHHTT--TCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccC--Cc-eECCCCCCccHHHHHHHHH--cCCcCCCCCCcCCC
Confidence 3567999999987 33 4679999999999999998 88999999998854
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.37 E-value=6.6e-13 Score=81.63 Aligned_cols=55 Identities=16% Similarity=0.381 Sum_probs=44.9
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAV 111 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~ 111 (139)
..+...|+||++.|. +.+ .++|||.||..||..|+. ..+.+||+||.++......
T Consensus 5 ~~~~~~C~IC~~~~~--~Pv-~~~CgH~fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 5 FPEYFRCPISLELMK--DPV-IVSTGQTYERSSIQKWLD-AGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp CSSSSSCTTTSCCCS--SEE-EETTTEEEEHHHHHHHHT-TTCCBCTTTCCBCSSCCCE
T ss_pred CcccCCCCCcccccc--CCE-EcCCCCeecHHHHHHHHH-HCcCCCCCCcCCCChhhCc
Confidence 456889999999987 444 469999999999999998 2388999999988765433
No 32
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.9e-13 Score=80.74 Aligned_cols=55 Identities=25% Similarity=0.542 Sum_probs=43.8
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc-CCcccccccccccccCc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL-FRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~-~~~~~CP~Cr~~~~~~~ 109 (139)
...+...|+||++.+. +. ..++|+|.||..||..|++. ..+..||+||+++....
T Consensus 16 ~~~~~~~C~IC~~~~~--~~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 16 KLQEEVICPICLDILQ--KP-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCCBCTTTCSBCS--SE-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred hCccCCEeccCCcccC--Ce-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3456789999999987 33 35699999999999999962 25679999999886543
No 33
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.36 E-value=6.9e-13 Score=82.39 Aligned_cols=55 Identities=27% Similarity=0.556 Sum_probs=44.3
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccC----CcccccccccccccCcc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLF----RRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~----~~~~CP~Cr~~~~~~~~ 110 (139)
..+...|+||++.+.. .+ .++|+|.||..||..|+... ....||+||..+.....
T Consensus 16 ~~~~~~C~IC~~~~~~--p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE--PV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CCTTTSCTTTCSCCSS--CE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred CccCCCCcCCChhhCc--ce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 4567889999999874 33 67999999999999999831 27899999998876533
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.34 E-value=2.6e-13 Score=83.47 Aligned_cols=57 Identities=26% Similarity=0.510 Sum_probs=44.9
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc-----CCcccccccccccccCccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL-----FRRVTCPLCRDFLDSRRAV 111 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~-----~~~~~CP~Cr~~~~~~~~~ 111 (139)
...+...|+||++.+... + .++|||.||..||..|+.. .....||+||..+......
T Consensus 8 ~~~~~~~C~IC~~~~~~p--~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP--L-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCCCCEETTTTEECSSC--C-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred hcccCCCCcCCCcccCCe--e-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 345678999999998743 2 4799999999999999982 1278999999988765433
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=8.3e-13 Score=82.01 Aligned_cols=56 Identities=27% Similarity=0.542 Sum_probs=44.6
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc----CCcccccccccccccCccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL----FRRVTCPLCRDFLDSRRAV 111 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~----~~~~~CP~Cr~~~~~~~~~ 111 (139)
..+...|+||++.+.. . ..++|+|.||..||..|+.. .....||+||..+......
T Consensus 16 ~~~~~~C~IC~~~~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ--P-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCCTTTCSCCSS--C-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred ccCCCCCCCCCcccCC--c-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 4567889999999874 3 34699999999999999982 1278999999988765443
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=2.2e-12 Score=81.67 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=42.5
Q ss_pred CCCCCcccccccccccCCCeeEEcC-CCCcccHHHHHHHHccCCcccccccccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELR-CDHIFHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~-C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
...++..|+||++.|. ++ ..++ |||.||..||..|+....+..||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~--~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMT--DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECS--SC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhc--Cc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4456889999999988 34 3678 999999999999997334579999999873
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.30 E-value=7.9e-13 Score=92.35 Aligned_cols=50 Identities=26% Similarity=0.539 Sum_probs=42.3
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
+...|+||++.+. +.+..++|||.||..||..|+. ..+..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLK--NTMTTKECLHRFCADCIITALR-SGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHH-TTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHH-hCcCCCCCCCCcCCC
Confidence 4568999999988 5666669999999999999998 238899999998854
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.29 E-value=1e-12 Score=87.97 Aligned_cols=56 Identities=29% Similarity=0.634 Sum_probs=46.3
Q ss_pred CCCCcccccccccccCC----CeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 53 DNEAVECAVCLCEIEEG----EEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~----~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
..+...|+||++.+... .....++|+|.||..||+.|+. .+.+||+||..+.....
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK--NANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH--HCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH--cCCCCCCCCCcCChhcc
Confidence 45678899999998742 3346779999999999999998 78899999998876543
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.3e-12 Score=73.94 Aligned_cols=47 Identities=32% Similarity=0.767 Sum_probs=38.0
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc-CCccccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL-FRRVTCPLC 101 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~-~~~~~CP~C 101 (139)
...+...|+||++.+... ..++|+|.||..||..|+.. +.+.+||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678899999998853 34799999999999999652 267899998
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.27 E-value=4.7e-12 Score=78.26 Aligned_cols=56 Identities=23% Similarity=0.481 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCCCeeEEc--CCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL--RCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
..++.+|+||++.+...+. ..+ +|||.||..|+..++. .....||.||+++.....
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~-~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRT-DENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTT-SSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHh-cCCCCCCCCCCccCCCch
Confidence 4567899999999864332 233 4999999999999985 257899999998876544
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.25 E-value=3.4e-12 Score=85.16 Aligned_cols=49 Identities=27% Similarity=0.513 Sum_probs=41.2
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
+...|+||++.+. +. ..++|||.||..||..|+. .....||+||..+..
T Consensus 51 ~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--RP-ITTVCQHNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--SE-EECTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc--Cc-EEeeCCCcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 4678999999988 44 3569999999999999997 245599999999876
No 42
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.1e-12 Score=74.22 Aligned_cols=47 Identities=30% Similarity=0.625 Sum_probs=37.9
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc-CCccccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL-FRRVTCPLC 101 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~-~~~~~CP~C 101 (139)
...++..|+||++.+.. . ..++|+|.||..||..|++. +....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQK--P-VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSS--C-EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCC--e-EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34567899999999873 3 35699999999999999972 245689998
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.24 E-value=3.9e-12 Score=84.28 Aligned_cols=53 Identities=23% Similarity=0.551 Sum_probs=43.5
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCc-ccccccccccccCc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRR-VTCPLCRDFLDSRR 109 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~-~~CP~Cr~~~~~~~ 109 (139)
...+...|+||++.+. +. ..++|||.||..||..|+. .. .+||+||.++....
T Consensus 14 ~~~~~~~C~IC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 14 PLESKYECPICLMALR--EA-VQTPCGHRFCKACIIKSIR--DAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCCGGGBCTTTCSBCS--SE-EECTTSCEEEHHHHHHHHH--HHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcCChhhc--Ce-EECCcCChhhHHHHHHHHh--hCCCCCCCCCCCcCHHh
Confidence 4456789999999987 44 3579999999999999998 44 49999999887654
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=9e-12 Score=81.36 Aligned_cols=55 Identities=31% Similarity=0.729 Sum_probs=42.3
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccC-CcccccccccccccCcccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLF-RRVTCPLCRDFLDSRRAVV 112 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~-~~~~CP~Cr~~~~~~~~~~ 112 (139)
+...|+||++.+... + .++|||.||..||..|+... ....||+||.++.......
T Consensus 20 ~~~~C~IC~~~~~~p--~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 20 KILECPICLELIKEP--V-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp HHTSCSSSCCCCSSC--C-BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCCCcccChhhcCe--E-ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 356799999998743 2 47999999999999999821 2258999999887654433
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.19 E-value=8.8e-12 Score=82.17 Aligned_cols=52 Identities=23% Similarity=0.617 Sum_probs=42.8
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
+...|+||++.+. +.+ .++|||.||..||..|+.. ...+||+||.++.....
T Consensus 22 ~~~~C~IC~~~~~--~p~-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILA--DPV-ETSCKHLFCRICILRCLKV-MGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCS--SEE-ECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhc--CcE-EcCCCCcccHHHHHHHHhH-CcCcCCCCCCCCCHhhc
Confidence 4678999999987 444 4799999999999999982 37799999999876543
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=84.61 Aligned_cols=50 Identities=22% Similarity=0.508 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
+...|+||++.|. +.+ .++|+|.||..||..|+. .....||+||.++...
T Consensus 77 ~~~~C~IC~~~~~--~pv-~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--QPV-TTECFHNVCKDCLQRSFK-AQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--SEE-ECTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc--CCE-EcCCCCchhHHHHHHHHH-hCCCcCCCCCccCCCC
Confidence 4568999999987 444 479999999999999998 2345899999998766
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.17 E-value=2.2e-11 Score=76.35 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=44.4
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
..+...|+||++-|. ++| +++|||.|++.||..|+. .+.+||+|+.++....
T Consensus 11 ~p~~~~CpI~~~~m~--dPV-~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 11 APDEFRDPLMDTLMT--DPV-RLPSGTVMDRSIILRHLL--NSPTDPFNRQMLTESM 62 (85)
T ss_dssp CCTTTBCTTTCSBCS--SEE-ECTTSCEEEHHHHHHHHH--HCSBCTTTCCBCCGGG
T ss_pred CchheECcccCchhc--CCe-ECCCCCEECHHHHHHHHh--cCCCCCCCcCCCChHh
Confidence 456889999999988 554 578999999999999998 6899999999887543
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.16 E-value=2.7e-11 Score=78.21 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=45.0
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
..+...|+||++-|. ++| +++|||.|++.||..|+. .+.+||+|+.++.....
T Consensus 26 ~p~~~~CpI~~~~m~--dPV-~~~cGhtf~r~~I~~~l~--~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 26 APDEFRDPLMDTLMT--DPV-RLPSGTIMDRSIILRHLL--NSPTDPFNRQTLTESML 78 (100)
T ss_dssp CSTTTBCTTTCSBCS--SEE-EETTTEEEEHHHHHHHTT--SCSBCSSSCCBCCTTSS
T ss_pred CcHhhCCcCccCccc--CCe-ECCCCCEEchHHHHHHHH--cCCCCCCCCCCCChhhc
Confidence 456889999999988 555 567999999999999998 78999999998876443
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.14 E-value=4.9e-11 Score=76.69 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=45.0
Q ss_pred CCCCcccccccccccCCCeeEEcCCC-CcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCD-HIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~-H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
..+...|+||++.|. ++| +++|| |.|++.||..|+. .+.+||+||.++.....
T Consensus 19 ~p~~~~CpI~~~~m~--dPV-~~~cG~htf~r~cI~~~l~--~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMC--DPV-VLPSSRVTVDRSTIARHLL--SDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CCTTTBCTTTCSBCS--SEE-ECTTTCCEEEHHHHHHHTT--TSCBCTTTCSBCCTTTS
T ss_pred CcHhcCCcCcccccc--CCe-ECCCCCeEECHHHHHHHHH--hCCCCCCCCCCCChhhc
Confidence 356789999999988 555 57899 9999999999998 68899999998876543
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.12 E-value=5.8e-12 Score=82.94 Aligned_cols=51 Identities=25% Similarity=0.641 Sum_probs=41.9
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
..++..|+||++.+. +. ..++|||.||..||..|+. ..+..||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~--~p-~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILV--EP-VTLPCNHTLCKPCFQSTVE-KASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCS--SC-EECTTSCEECHHHHCCCCC-TTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccC--ce-eEcCCCCHHhHHHHHHHHh-HCcCCCCCCCcccCc
Confidence 345778999999987 33 3569999999999999997 247899999998864
No 51
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.10 E-value=5.4e-11 Score=69.86 Aligned_cols=52 Identities=29% Similarity=0.698 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCCCeeEEcCCC--C---cccHHHHHHHHccCCccccccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCD--H---IFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~--H---~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
.++...|.||+++. ++.. ++||. + .||..|+.+|+..+++.+||+|+.++..
T Consensus 3 ~~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45677899999983 3333 57865 4 9999999999974457899999998753
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.09 E-value=4.1e-11 Score=71.19 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=39.8
Q ss_pred CCCcccccccccccCCCeeE-EcCCCCc-ccHHHHHHHHccCCcccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIR-ELRCDHI-FHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~-~l~C~H~-fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
.++..|.||++... +.+. .+||||. |+..|+..|.+ .+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPK--NGCIVHGKTGHLMACFTCAKKLKK--RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCS--CEEEEETTEEEEEECHHHHHHHHH--TTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCC--CEEEECCCCCChhhHHHHHHHHHH--cCCcCCCcCcchh
Confidence 45678999999855 3332 2399999 89999999998 7889999999874
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.08 E-value=4.1e-11 Score=81.86 Aligned_cols=52 Identities=15% Similarity=0.343 Sum_probs=42.3
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
...+...|+||++.+. +.+ .++|||.||..||..|+. ....+||+||.++..
T Consensus 27 ~l~~~~~C~IC~~~~~--~pv-~~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVLR--RPF-QAQCGHRYCSFCLASILS-SGPQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBCS--SEE-ECTTSCEEEHHHHHHHGG-GSCEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhhc--CcE-ECCCCCccCHHHHHHHHh-cCCCCCCCCCCcccc
Confidence 4466889999999987 444 479999999999999997 244599999997643
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=3.9e-11 Score=69.36 Aligned_cols=50 Identities=22% Similarity=0.498 Sum_probs=39.8
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
..+...|+||++.+... ..++|+|.||..||..| ...||+||+.+.....
T Consensus 3 e~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS-----GMQCPICQAPWPLGAD 52 (56)
T ss_dssp SCCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSCCSS
T ss_pred cccCCCceEeCCccCCe---EEcCCCCcccHHHHccC-----CCCCCcCCcEeecCCc
Confidence 34577899999998843 36799999999998773 6689999998875443
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.04 E-value=1.2e-10 Score=91.15 Aligned_cols=51 Identities=22% Similarity=0.591 Sum_probs=42.0
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
....|+||++.+. + ...+||||.||..||..|+. ..+.+||+||+++....
T Consensus 331 ~~~~C~ICle~~~--~-pv~lpCGH~FC~~Ci~~wl~-~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDK--D-VKIEPCGHLMCTSCLTSWQE-SEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBC--C-EEEETTCCEECHHHHHHHHH-HTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCC--C-eEEeCCCChhhHHHHHHHHh-cCCCCCCCCCCccCCce
Confidence 3578999999975 3 35689999999999999997 25789999999887643
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.04 E-value=2.8e-11 Score=79.97 Aligned_cols=48 Identities=25% Similarity=0.607 Sum_probs=39.3
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
+...|+||++.|. +++...+|||.||..||..|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~--~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCS--SCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhh--CccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCccc
Confidence 4678999999987 4443339999999999999975 7899999988543
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.03 E-value=1e-10 Score=69.21 Aligned_cols=49 Identities=18% Similarity=0.393 Sum_probs=39.3
Q ss_pred CCCcccccccccccCCCeeE-EcCCCCc-ccHHHHHHHHccCCcccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIR-ELRCDHI-FHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~-~l~C~H~-fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
+....|.||++... +.+. .+||||. |+..|+..|.+ .+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~--~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPR--DGNIIHGRTGHLVTCFHCARRLKK--AGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBS--CEEEEETTEEEEEECHHHHHHHHH--TTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCC--CeEEEecCCCCHhHHHHHHHHHHH--hCCcCCCcCchhh
Confidence 45678999999854 3322 2399998 99999999998 6789999999874
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.01 E-value=7e-11 Score=90.74 Aligned_cols=57 Identities=30% Similarity=0.725 Sum_probs=42.9
Q ss_pred CCCCcccccccccccCCCeeE-----EcCCCCcccHHHHHHHHccCC---------cccccccccccccCc
Q 038790 53 DNEAVECAVCLCEIEEGEEIR-----ELRCDHIFHRVCLDQWVGLFR---------RVTCPLCRDFLDSRR 109 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~-----~l~C~H~fh~~Ci~~Wl~~~~---------~~~CP~Cr~~~~~~~ 109 (139)
..+..+|+||++.+.++..+. ..+|+|.||..||.+||+... ..+||+||+++..+-
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 346778999999988744332 237999999999999997211 268999999887543
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=80.42 Aligned_cols=55 Identities=22% Similarity=0.526 Sum_probs=44.3
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
...+...|+||++.+. +++ .++|||.||..||..|+.. ...+||+||.++.....
T Consensus 14 ~~~~~~~C~IC~~~~~--~pv-~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~ 68 (170)
T 3hcs_A 14 PLESKYECPICLMALR--EAV-QTPCGHRFCKACIIKSIRD-AGHKCPVDNEILLENQL 68 (170)
T ss_dssp CCCGGGBCTTTCSBCS--SEE-ECTTSCEEEHHHHHHHHHH-HCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCCCChhhc--CcE-ECCCCCHHHHHHHHHHHHh-CCCCCCCCccCcchhhh
Confidence 4566889999999987 444 4799999999999999971 33499999998876543
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=4.5e-10 Score=71.51 Aligned_cols=55 Identities=13% Similarity=0.439 Sum_probs=41.9
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccC----Ccccccc--cccc-cccCc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLF----RRVTCPL--CRDF-LDSRR 109 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~----~~~~CP~--Cr~~-~~~~~ 109 (139)
......|+||++.|. ++|....|||.|++.||..|+... ...+||+ |+.. +....
T Consensus 4 ~~~~~~CPI~~~~~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 4 GSSGFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp CSSCCBCTTTCSBCS--SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CCcEeECcCcCchhc--CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 456788999999988 666433599999999999999721 2369999 9866 54433
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.93 E-value=4.9e-10 Score=83.36 Aligned_cols=57 Identities=9% Similarity=0.055 Sum_probs=45.0
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAVV 112 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~~ 112 (139)
.......|+||++.|. ++| +++|||.|++.||..|+.. .+.+||+||.++......+
T Consensus 204 ~~~~~~~c~i~~~~~~--dPv-~~~~gh~f~~~~i~~~~~~-~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 204 DIPDYLCGKISFELMR--EPC-ITPSGITYDRKDIEEHLQR-VGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CCCSTTBCTTTCSBCS--SEE-ECSSCCEEETTHHHHHHHH-TCSSCTTTCCCCCGGGCEE
T ss_pred CCCcccCCcCcCCHhc--CCe-ECCCCCEECHHHHHHHHHH-CCCCCcCCCCCCchhcCcc
Confidence 3456889999999988 555 5789999999999999972 3455999999987654433
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=4.7e-10 Score=71.28 Aligned_cols=55 Identities=29% Similarity=0.658 Sum_probs=42.5
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccC------Ccccccc--cccc--cccC
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLF------RRVTCPL--CRDF--LDSR 108 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~------~~~~CP~--Cr~~--~~~~ 108 (139)
.+..+|+||++++...+-+...+|+|.||..|+..+++.. ....||. |+.. +.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 4567899999998765544445899999999999999731 2368999 9988 5543
No 63
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=3.5e-10 Score=68.92 Aligned_cols=44 Identities=23% Similarity=0.572 Sum_probs=36.2
Q ss_pred CCcccccccccccCCCeeEEcCCCCc-ccHHHHHHHHccCCccccccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHI-FHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
++..|+||++.+. + ...+||||. ||..|+..| ..||+||+++..
T Consensus 23 ~~~~C~iC~~~~~--~-~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI--A-IVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC--C-EEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC--C-EEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 4568999999865 3 346799999 999999887 579999998764
No 64
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.1e-09 Score=81.44 Aligned_cols=55 Identities=18% Similarity=0.506 Sum_probs=45.1
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccc--cccccccCcc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPL--CRDFLDSRRA 110 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~--Cr~~~~~~~~ 110 (139)
.....|+||++.|. ++|..+.|||.|++.||..|+.......||+ |++.+.....
T Consensus 179 ~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 179 KIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp BCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred ceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 45678999999997 7887779999999999999997334578999 9997765443
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.83 E-value=2.7e-09 Score=75.44 Aligned_cols=57 Identities=9% Similarity=0.047 Sum_probs=45.3
Q ss_pred CCCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCccc
Q 038790 51 NNDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAV 111 (139)
Q Consensus 51 ~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~ 111 (139)
........|+||++.|. ++| +++|||.|++.||..|+.. .+.+||+|+.++......
T Consensus 101 ~~ip~~f~CPI~~elm~--DPV-~~~~Ghtfer~~I~~~l~~-~~~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 101 REIPDYLCGKISFELMR--EPC-ITPSGITYDRKDIEEHLQR-VGHFDPVTRSPLTQDQLI 157 (179)
T ss_dssp CCCCGGGBCTTTCSBCS--SEE-ECTTSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGGCE
T ss_pred cCCcHhhcccCccccCC--CCe-ECCCCCEECHHHHHHHHHh-CCCCCCCCcCCCChhhCc
Confidence 34567889999999998 555 5699999999999999972 234799999988765433
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.4e-08 Score=60.84 Aligned_cols=47 Identities=26% Similarity=0.672 Sum_probs=37.4
Q ss_pred CCCCCcccccccccccCCCeeEEcCCCCc-ccHHHHHHHHccCCccccccccccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCDHI-FHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
...+...|.||++... .+..+||+|. |+..|+.. ...||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence 3445778999998754 3567899999 99999983 4689999998765
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=7.4e-09 Score=63.02 Aligned_cols=44 Identities=23% Similarity=0.577 Sum_probs=35.2
Q ss_pred CCcccccccccccCCCeeEEcCCCCc-ccHHHHHHHHccCCccccccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHI-FHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
+...|+||++.+.. ...+||+|. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC------CCCCccCCceecC
Confidence 35679999998653 346799999 99999953 4689999998865
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.65 E-value=1.5e-08 Score=59.43 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=43.1
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcccc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAVV 112 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~~ 112 (139)
...|+|+++.|. +.+...++||.|.+.||.+|+. .+.+||+.+.++......+
T Consensus 3 ~~~CpIs~~~m~--dPV~~~~sG~~yer~~I~~~l~--~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVK--DTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp -CCCTTTCSCCS--SEEEETTTTEEEEHHHHHHHHH--HHSBCTTTCCBCCGGGCEE
T ss_pred eEEecCCCCCCC--CCEEeCCCCcEEcHHHHHHHHH--hCCCCcCCcCCCChhhcEE
Confidence 357999999998 5554438999999999999998 6788999999887655443
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=6.4e-09 Score=64.12 Aligned_cols=44 Identities=30% Similarity=0.578 Sum_probs=35.4
Q ss_pred CcccccccccccCCCeeEEcCCCCc-ccHHHHHHHHccCCcccccccccccccC
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHI-FHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
+..|.||++.+. .+..+||||. |+..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 567999998865 3456799999 999998875 3799999987653
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.59 E-value=3.4e-08 Score=62.91 Aligned_cols=48 Identities=25% Similarity=0.381 Sum_probs=40.2
Q ss_pred ccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 58 ECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
-|.+|--++. ...+.+||+|+|+.+|+..|.+ +...+||.|+.++..-
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~-~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEK-KGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHH-TTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHh-ccCCCCcCcCCeeeee
Confidence 3788887776 6778899999999999999986 3678999999987643
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.42 E-value=4.8e-08 Score=75.56 Aligned_cols=44 Identities=25% Similarity=0.696 Sum_probs=36.3
Q ss_pred CCcccccccccccCCCeeEEcCCCCc-ccHHHHHHHHccCCccccccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHI-FHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~-fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
++..|+||++.+. + ...+||||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~--~-~v~lpCgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV--S-VVFIPCGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC--C-EEEETTCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC--c-eEEcCCCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 4678999999876 3 346699999 999999877 569999998754
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.36 E-value=2e-07 Score=68.69 Aligned_cols=54 Identities=19% Similarity=0.492 Sum_probs=42.6
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~ 110 (139)
.-..|.||.+-...|... -.|+|.||..|+..|+++..+..||.|+.+++...+
T Consensus 179 ~i~~C~iC~~iv~~g~~C--~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC--SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCCccc--CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 367899999998866432 249999999999999984456799999998765543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.54 E-value=0.0016 Score=40.74 Aligned_cols=58 Identities=19% Similarity=0.397 Sum_probs=43.9
Q ss_pred ccCCCCCCcccccccccccCCCeeEEcCC-CCcccHHHHHHHHccCCcccccccccccccCccccc
Q 038790 49 ERNNDNEAVECAVCLCEIEEGEEIRELRC-DHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAVVE 113 (139)
Q Consensus 49 ~~~~~~~~~~C~ICl~~~~~~~~~~~l~C-~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~~~ 113 (139)
.....-+...|..|+-..+ . .+.| .|..|..|+..-|. ....||+|+++++.+-....
T Consensus 21 ~d~s~~G~~nCKsCWf~~k--~---LV~C~dHYLCl~CLtlmL~--~SdrCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 21 PDATHLGPQFCKSCWFENK--G---LVECNNHYLCLNCLTLLLS--VSNRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp SSCCCSCCCCCCSSCSCCS--S---EEECSSCEEEHHHHHHTCS--SSSEETTTTEECCCCSCTTT
T ss_pred CCccccCcccChhhccccC--C---eeeecchhhHHHHHHHHHh--hccCCcccCCcCCcceecCc
Confidence 3445567788999996644 2 3346 59999999999988 99999999998876554443
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.93 E-value=0.0055 Score=38.48 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=26.6
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHH
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQW 89 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~W 89 (139)
++..|.||.+++.......-+.|+|.|+..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 45789999987543333344799999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.18 E-value=0.016 Score=33.96 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=33.9
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCccccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRDFL 105 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~~ 105 (139)
...+..|.||.+. ++-+.--.|...||..|++.-+.. ...=.||.|+...
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3456779999853 332221278899999999988762 1234899997644
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.75 E-value=0.038 Score=31.84 Aligned_cols=52 Identities=19% Similarity=0.404 Sum_probs=35.5
Q ss_pred CCCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHcc---CCcccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGL---FRRVTCPLCRDF 104 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~---~~~~~CP~Cr~~ 104 (139)
..+...|+||...+.++..+..- .|..-||..|+.--... ...-.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35577899999988654444333 68899999998653221 145689999763
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=92.52 E-value=0.039 Score=32.83 Aligned_cols=54 Identities=20% Similarity=0.425 Sum_probs=35.7
Q ss_pred CCCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHccC--Cccccccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGLF--RRVTCPLCRDFLDS 107 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~~--~~~~CP~Cr~~~~~ 107 (139)
..+...|.+|..... ++.+..- .|..-||..|+..-.... ..-.||.|+..+..
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 445667999987753 3333322 688999999998654311 35689999876543
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.85 E-value=0.25 Score=42.79 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=45.7
Q ss_pred CCCCCcccccccccccCCCeeEEcCCC-CcccHHHHHHHHccCCcccccccccccccCcccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRCD-HIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAVV 112 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C~-H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~~ 112 (139)
...+...|+|-.+-|. ++| ++|-| +.|-+..|..|+. .+.+||+=|.++......+
T Consensus 887 ~iP~~F~cPIs~~lM~--DPV-ilpsG~~TydR~~I~~wl~--~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMK--DPV-ILPASKMNIDRSTIKAHLL--SDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp CSCGGGBCTTTCSBCS--SEE-ECTTTCCEEEHHHHHHHHT--TCCBCTTTCCBCCGGGCEE
T ss_pred CCcHHhCCcchhhHHh--CCe-EcCCCCEEECHHHHHHHHh--cCCCCCCCCCCCCcccccc
Confidence 4456888999999998 555 57887 6899999999998 7889999999887654443
No 79
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.80 E-value=0.27 Score=29.47 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHcc---CCcccccccccccccCc
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGL---FRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~---~~~~~CP~Cr~~~~~~~ 109 (139)
.+...| ||...+..+..+..- .|..-||..|+.---.. ...-.||.|+....++.
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~ 68 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSI 68 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCB
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCCc
Confidence 445567 999887544444333 68899999998632110 14678999987655443
No 80
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=90.64 E-value=0.053 Score=31.36 Aligned_cols=53 Identities=17% Similarity=0.400 Sum_probs=34.1
Q ss_pred CCCCcccccccccccCCCeeEEc--CCCCcccHHHHHHHHc-----cCCccccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL--RCDHIFHRVCLDQWVG-----LFRRVTCPLCRDFL 105 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~Wl~-----~~~~~~CP~Cr~~~ 105 (139)
..++..|.+|......++...++ .|...||..|+..=+. -+..=.||.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 34577899999875432222222 7889999999886432 12345788887643
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=89.69 E-value=0.23 Score=28.31 Aligned_cols=48 Identities=31% Similarity=0.582 Sum_probs=32.3
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRD 103 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~ 103 (139)
...+..|.+|.+. ++-+.--.|...||..|+..=+.. +..=.||.|+.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4457789999863 232222268889999999975531 24458999975
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=89.53 E-value=0.12 Score=36.28 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=34.5
Q ss_pred CcccccccccccCCCe---eEEc-CCCCcccHHHHHHH------Hc---cCCcccccccccccc
Q 038790 56 AVECAVCLCEIEEGEE---IREL-RCDHIFHRVCLDQW------VG---LFRRVTCPLCRDFLD 106 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~---~~~l-~C~H~fh~~Ci~~W------l~---~~~~~~CP~Cr~~~~ 106 (139)
+..|+||...|.+++. +... .|..-||..|+.-= +. ....-.||.|+..-+
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 4469999999987762 4433 68999999997431 00 001469999987543
No 83
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=89.17 E-value=0.34 Score=28.05 Aligned_cols=36 Identities=22% Similarity=0.672 Sum_probs=25.3
Q ss_pred CCCCcccccccccccCCCeeEEc--CCCCcccHHHHHH
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL--RCDHIFHRVCLDQ 88 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~ 88 (139)
......|.+|..++..++..+.- .|..-||..|+.-
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 34567899999998776655443 6889999999753
No 84
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.17 E-value=0.2 Score=30.97 Aligned_cols=54 Identities=26% Similarity=0.440 Sum_probs=35.0
Q ss_pred cCCCCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCcccccccccccc
Q 038790 50 RNNDNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRDFLD 106 (139)
Q Consensus 50 ~~~~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~~~ 106 (139)
......+..|.+|.+. ++-+.--.|...||..|+.+=+.. +..=.||.|+..-.
T Consensus 19 ~~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 19 GTLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp CSSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred cccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 3345567789999965 232221268889999999775541 13447999986433
No 85
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=88.85 E-value=0.18 Score=29.74 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=32.7
Q ss_pred CCCCccccccccccc-CCCeeEEc-CCCCcccHHHHHHHHccCCccccccccc
Q 038790 53 DNEAVECAVCLCEIE-EGEEIREL-RCDHIFHRVCLDQWVGLFRRVTCPLCRD 103 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~-~~~~~~~l-~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~ 103 (139)
...+..|.||.+.-. .++.+..- .|.-.||..|+..=..-+..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 456778999987632 22233222 7889999999875322124457888865
No 86
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=88.80 E-value=0.22 Score=30.66 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=33.5
Q ss_pred CCCCcccccccccccCCC-eeEEc-CCCCcccHHHHHHHHccCCccccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGE-EIREL-RCDHIFHRVCLDQWVGLFRRVTCPLCRDFL 105 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~-~~~~l-~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~ 105 (139)
..++..|.||.+.-..+. .+..- .|.-.||..|+..=+.-...=.||.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 345778999997632222 22222 688899999987533212456899997643
No 87
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=88.65 E-value=0.088 Score=33.56 Aligned_cols=52 Identities=21% Similarity=0.463 Sum_probs=35.4
Q ss_pred CcccccccccccCCCeeEEc--CCCCcccHHHHHHHH--------ccCCccccccccccccc
Q 038790 56 AVECAVCLCEIEEGEEIREL--RCDHIFHRVCLDQWV--------GLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~Wl--------~~~~~~~CP~Cr~~~~~ 107 (139)
...|.||...+..+.....- .|..-||..|+.-=- +....-.||.|+.....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 45799999998765554444 588899999985321 00135689999875543
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.78 E-value=0.25 Score=26.89 Aligned_cols=46 Identities=28% Similarity=0.518 Sum_probs=28.5
Q ss_pred ccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCccccccccc
Q 038790 58 ECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRD 103 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~ 103 (139)
.|.||.+.-..++-+.--.|...||..|+++=+.. +..=.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888866333222222278899999999764431 12346888864
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=86.25 E-value=0.2 Score=31.88 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=31.5
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCcccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCR 102 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr 102 (139)
...+..|.||.+.=+..+-+.-..|...||..|+...+.. ...-.||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567889999876332222333478999999999876541 1233555553
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=86.04 E-value=1.2 Score=27.52 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=37.3
Q ss_pred CCCcccccccccccCCCe--eEE--cCCCCcccHHHHHHHHccCCcccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEE--IRE--LRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~--~~~--l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
.....|.||-+++..... +-. --|+--.|+.|..-=.+ +.+..||-|+.++.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErk-eG~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERR-EGTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHH-TSCSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHh-ccCccccccCCccc
Confidence 356789999998754332 111 14666789999876655 47899999998885
No 91
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.48 E-value=0.12 Score=28.96 Aligned_cols=48 Identities=27% Similarity=0.543 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRD 103 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~ 103 (139)
...+..|.+|.+. ++-+.--.|...||..|+.+=+.. +..=.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4457779999974 232222268899999998864431 12346888754
No 92
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=85.37 E-value=0.17 Score=35.83 Aligned_cols=49 Identities=27% Similarity=0.478 Sum_probs=32.9
Q ss_pred CCCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHcc--CCccccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGL--FRRVTCPLCRDFL 105 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~~ 105 (139)
+..+..|.+|.+. ..+... .|...||..|+.+-+.. ...=.||.|+..-
T Consensus 4 d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456779999854 222222 68899999999876541 1345899998744
No 93
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.78 E-value=0.18 Score=28.76 Aligned_cols=49 Identities=27% Similarity=0.404 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCcccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRDF 104 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~ 104 (139)
+..+..|.+|.+. ++-+.--.|...||..|+..=+.. ...=.||.|+..
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3457779999853 221111157889999998864441 123479999764
No 94
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.55 E-value=0.16 Score=29.85 Aligned_cols=55 Identities=24% Similarity=0.457 Sum_probs=34.7
Q ss_pred CCCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHc--cCCcccccccccccccC
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVG--LFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~--~~~~~~CP~Cr~~~~~~ 108 (139)
......| ||......+..+..- .|..-||..|+.---. ....-.||.|+....+.
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ps 70 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPS 70 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSC
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCCC
Confidence 3445668 798876555444333 6888999999765311 01457899998755443
No 95
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=84.44 E-value=0.12 Score=29.34 Aligned_cols=50 Identities=26% Similarity=0.472 Sum_probs=32.6
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCcccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRDFLD 106 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~~~ 106 (139)
..+..|.+|.+. ++-+.--.|...||..|+.+=+.. ...=.||.|.....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 346789999864 332222268899999999864431 13447999976543
No 96
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.38 E-value=0.27 Score=34.14 Aligned_cols=49 Identities=29% Similarity=0.521 Sum_probs=32.7
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCcccccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRDFLD 106 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~~~ 106 (139)
.+..|.+|.+. |+-+.--.|...||..|+.+-+.. ...=.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45679999854 332222268899999998776552 13457999987543
No 97
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.18 E-value=0.83 Score=27.92 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=24.0
Q ss_pred CCCCCcccccccccccCCCeeEEcC---CCCcccHHHHHHH
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELR---CDHIFHRVCLDQW 89 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~---C~H~fh~~Ci~~W 89 (139)
....+..|.||-.- ..++ .+| |+.+||..|+.+-
T Consensus 11 ~~~~D~~C~VC~~~-t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVW-TAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCC-CSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccccc-cccc---eeccccccccccHhhcccc
Confidence 34568889999743 2222 334 6899999999996
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=83.52 E-value=0.32 Score=33.30 Aligned_cols=50 Identities=22% Similarity=0.579 Sum_probs=32.8
Q ss_pred CCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHc---cCCcccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVG---LFRRVTCPLCRDF 104 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~---~~~~~~CP~Cr~~ 104 (139)
.+...| +|......+..+... .|...||..|+.---. ....-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 456678 999886544443333 6889999999853111 0246789999864
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.95 E-value=0.44 Score=28.19 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=32.5
Q ss_pred CcccccccccccCCCeeEEc-CCCCcccHHHHHHHHc-------cCCcccccccccccccC
Q 038790 56 AVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVG-------LFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~-------~~~~~~CP~Cr~~~~~~ 108 (139)
...| ||...... ..+..- .|..-||..|+.--.. ....-.||.|+..-.++
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~ 74 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPS 74 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSS
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcC
Confidence 4557 89887653 233322 6889999999853111 02578999998755443
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=82.84 E-value=1.9 Score=28.87 Aligned_cols=48 Identities=19% Similarity=0.423 Sum_probs=32.8
Q ss_pred CCCCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHc---------cCCccccccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVG---------LFRRVTCPLCRD 103 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~---------~~~~~~CP~Cr~ 103 (139)
.+..+..|.+|.+. -.+... .|-..||..||.+=+. ....=.||+|+.
T Consensus 59 ~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34557789999964 222222 6889999999997653 124457999974
No 101
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.66 E-value=0.23 Score=30.47 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=33.8
Q ss_pred CCcccccccccccCCCeeEEc--CCCCcccHHHHHHHHc------cCCcccccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIREL--RCDHIFHRVCLDQWVG------LFRRVTCPLCRDFLD 106 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~Wl~------~~~~~~CP~Cr~~~~ 106 (139)
.+..|.+|...-..+....++ .|...||..|+.+=+. -...=.||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 356799999764332222233 7889999999886543 123458999976443
No 102
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=81.72 E-value=1.7 Score=33.62 Aligned_cols=49 Identities=14% Similarity=0.453 Sum_probs=35.7
Q ss_pred CcccccccccccCCCeeEEcCCCCc--ccHHHHHHHHccCCcccccccccccc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHI--FHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~--fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
...|+|-...+. .+++...|.|. |-..-+.........-.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 456999888877 77888899997 66554544443346679999987663
No 103
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=81.47 E-value=0.42 Score=27.57 Aligned_cols=48 Identities=31% Similarity=0.491 Sum_probs=31.6
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRD 103 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~ 103 (139)
...+..|.||.+. ++-+.--.|...||..|+.+=+.. ...=.||.|..
T Consensus 5 ~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 3457789999964 232222268899999998864431 13447999965
No 104
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.79 E-value=0.58 Score=29.24 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=30.2
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc-CCccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL-FRRVTCPLCRD 103 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~-~~~~~CP~Cr~ 103 (139)
+...| ||......+.-+.--.|...||..|+..=... ...-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34557 89876554432222278899999998753221 12469999974
No 105
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=80.69 E-value=1.2 Score=25.91 Aligned_cols=34 Identities=15% Similarity=0.453 Sum_probs=26.1
Q ss_pred CCCCCcccccccccccCCCeeEEcCC-CCcccHHHHHHH
Q 038790 52 NDNEAVECAVCLCEIEEGEEIRELRC-DHIFHRVCLDQW 89 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l~C-~H~fh~~Ci~~W 89 (139)
...+..-|.||.++ ..++-+.| +-+||..|...-
T Consensus 4 ~~ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 4 GSSGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp SCCCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCcCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 34567789999987 55777889 678988887664
No 106
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=80.18 E-value=2.2 Score=32.97 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=35.8
Q ss_pred CcccccccccccCCCeeEEcCCCCc--ccHHHHHHHHccCCcccccccccccc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHI--FHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~--fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
...|+|-...+. .+++...|.|. |-..-+.........-.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 446999888877 77888899997 76555544443345679999987664
No 107
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.54 E-value=0.18 Score=31.24 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=32.8
Q ss_pred CCCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHcc--CCcccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGL--FRRVTCPLCRDF 104 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~ 104 (139)
..++..|.||...-..+ .+..- .|...||..|+.+=+.. ...=.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34566799999764322 22222 78899999998754431 133469999764
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.92 E-value=3.4 Score=26.13 Aligned_cols=47 Identities=30% Similarity=0.444 Sum_probs=28.0
Q ss_pred CCccccccccccc------CCCeeEEcCCCCcccHHHHHH------HHccCCcccccccc
Q 038790 55 EAVECAVCLCEIE------EGEEIRELRCDHIFHRVCLDQ------WVGLFRRVTCPLCR 102 (139)
Q Consensus 55 ~~~~C~ICl~~~~------~~~~~~~l~C~H~fh~~Ci~~------Wl~~~~~~~CP~Cr 102 (139)
....|.+|+..=. .++-+.-..|+..||..|+.. -+. +..=.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~-~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK-ALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHH-TSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhh-ccccccccCC
Confidence 3567999987521 112222237999999999953 222 2445666664
No 109
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=78.33 E-value=0.53 Score=23.71 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=8.3
Q ss_pred CCccccccccccc
Q 038790 55 EAVECAVCLCEIE 67 (139)
Q Consensus 55 ~~~~C~ICl~~~~ 67 (139)
++..|+||+.++.
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 3566777776655
No 110
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=76.57 E-value=0.66 Score=22.59 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=18.8
Q ss_pred cccccccccccCCCeeEEcCCCCcccHHH
Q 038790 57 VECAVCLCEIEEGEEIRELRCDHIFHRVC 85 (139)
Q Consensus 57 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~C 85 (139)
..|+.|-+.+-+.+.+. .=+..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 46888888876655433 3478888887
No 111
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.50 E-value=2.2 Score=25.67 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=25.6
Q ss_pred CCCcccccccccccCCCeeEEc-CCCCcccHHHHHHH
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQW 89 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~W 89 (139)
.+...|.+|...|..-..-..- .||.+|+..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4566899999999854432222 69999999995543
No 112
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=75.74 E-value=1.9 Score=25.79 Aligned_cols=35 Identities=29% Similarity=0.601 Sum_probs=24.9
Q ss_pred CCCcccccccccccCCCeeEEc-CCCCcccHHHHHH
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQ 88 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~ 88 (139)
.+...|.+|...|..-..-..- .||.+|+..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4456799999999854322222 6999999999654
No 113
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=74.76 E-value=1.8 Score=28.24 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=24.1
Q ss_pred CCCcccccccccccCCCeeEEc-CCCCcccHHHHH
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLD 87 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~ 87 (139)
.+...|.+|...|..-..-... .||++||..|..
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 3456799999999854322222 699999999944
No 114
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.23 E-value=1.5 Score=26.04 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=31.5
Q ss_pred CCCcccccccccccCCCeeEEc--CCCCcccHHHHHHHHcc-------CCcccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIREL--RCDHIFHRVCLDQWVGL-------FRRVTCPLCRDFLD 106 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~Wl~~-------~~~~~CP~Cr~~~~ 106 (139)
.....| ||......+.-+.-= .|..-||..|+.-=-.. -.+-.||.|+..-.
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 345667 798874433222222 58889999998642110 03678999986443
No 115
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=73.68 E-value=0.84 Score=29.07 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=29.1
Q ss_pred CcccccccccccCCCeeEE-cCCCCcccHHHHHHHHcc--CCccccccccc
Q 038790 56 AVECAVCLCEIEEGEEIRE-LRCDHIFHRVCLDQWVGL--FRRVTCPLCRD 103 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~-l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~ 103 (139)
-..|.+|.+.-..++.+.. -.|...||..|+++=+.. +..=.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3368888864222222222 268899999998765541 12347888864
No 116
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=73.42 E-value=2.8 Score=25.50 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=34.6
Q ss_pred CCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHcc-----CCccccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGL-----FRRVTCPLCRDFLDS 107 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~-----~~~~~CP~Cr~~~~~ 107 (139)
.+...|.+|...|..-..-..- .||.+|+..|....+.. +....|-.|-..+..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 4456799999998854332222 69999999996553211 134577777665543
No 117
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.99 E-value=0.6 Score=27.91 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=27.9
Q ss_pred ccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CC-ccccccccc
Q 038790 58 ECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FR-RVTCPLCRD 103 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~-~~~CP~Cr~ 103 (139)
.|.||...-..++-+.--.|...||..|+.+=|.. .. .=.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68888865333332211178899999998854431 12 346888854
No 118
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=72.69 E-value=2.2 Score=26.03 Aligned_cols=52 Identities=21% Similarity=0.478 Sum_probs=32.2
Q ss_pred CCCcccccccccccCCCeeEE-cCCCCcccHHHHHHHHcc----CCccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIRE-LRCDHIFHRVCLDQWVGL----FRRVTCPLCRDFL 105 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~-l~C~H~fh~~Ci~~Wl~~----~~~~~CP~Cr~~~ 105 (139)
.+...|.+|...|..-..-.. -.||++|+..|....... +....|-.|-..+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 345679999999875433222 279999999996654321 1234565564443
No 119
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=72.40 E-value=0.62 Score=27.26 Aligned_cols=45 Identities=29% Similarity=0.628 Sum_probs=26.5
Q ss_pred ccccccccccCCCeeEEc-CCCCcccHHHHHHHHccC--C-ccccccccc
Q 038790 58 ECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGLF--R-RVTCPLCRD 103 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~~--~-~~~CP~Cr~ 103 (139)
.|.+|...-.. ..+..- .|...||..|+.+=|... . .=.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 46677754222 222222 688999999988544311 2 447888864
No 120
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.32 E-value=2.6 Score=24.62 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=22.2
Q ss_pred cccccccccccCCCeeEEc-CCCCcccHHHHH
Q 038790 57 VECAVCLCEIEEGEEIREL-RCDHIFHRVCLD 87 (139)
Q Consensus 57 ~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~ 87 (139)
..|.+|...|..-..-..- .||.+|+..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 5799999998754322222 699999999853
No 121
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.97 E-value=2.4 Score=24.80 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=29.1
Q ss_pred CCCcccccccccccCCCeeEEc-C--CC-CcccHHHHHHHHcc--CCccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-R--CD-HIFHRVCLDQWVGL--FRRVTCPLCRDFL 105 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~~ 105 (139)
.+...| ||..... +. +..- . |. .-||..|+. |.. ...-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 345667 8987632 32 2222 3 55 589999998 442 2456899997643
No 122
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=71.96 E-value=0.54 Score=30.63 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=31.0
Q ss_pred CCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHccCCcccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGLFRRVTCPLCRDF 104 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~ 104 (139)
.....|..|...|..-..-... .||.+|+..|...... ....|-.|-..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~--~vRVC~~C~~~ 66 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN--GPRLCLLCQRF 66 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------CCEEHHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC--CceECHHHHHH
Confidence 3456799999998753322222 7999999999776655 56778888553
No 123
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.18 E-value=2.8 Score=25.18 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCCcccccccccccCCCeeEEc-CCCCcccHHHHH
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLD 87 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~ 87 (139)
.+...|.+|...|..-..-..- .||.+|+..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4456799999998754322222 699999999944
No 124
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.45 E-value=3.8 Score=24.15 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=32.4
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCccc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAV 111 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~ 111 (139)
.....|+-|.+.+...+.+. .-+..||..| ..|-.|+..|....-.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C----------F~C~~C~~~L~~~~~~ 58 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--VNGHFFHRSC----------FRCHTCEATLWPGGYE 58 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--BTTBCCBTTT----------CBCSSSCCBCCTTSEE
T ss_pred CCCCCCcccCCCcccceEEE--ECCCeeCCCc----------CEEcCCCCCcCCCcee
Confidence 45677999999987666543 3477899866 3477888887665543
No 125
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=69.39 E-value=2.3 Score=24.98 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=32.7
Q ss_pred cccccccccCCCeeEEc-CCCCcccHHHHHHHHcc---CCcccccccccccccCcc
Q 038790 59 CAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGL---FRRVTCPLCRDFLDSRRA 110 (139)
Q Consensus 59 C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~---~~~~~CP~Cr~~~~~~~~ 110 (139)
--||...+..+..+..- .|.--||..|+.---.. ...-.||.|+....++..
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~~~ 67 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTL 67 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCCCCB
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCCCeE
Confidence 34888776544444433 68899999999643210 134679999876554433
No 126
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=68.32 E-value=0.88 Score=31.78 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=30.2
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCcccccccccc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRDF 104 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~ 104 (139)
+..|.+|.+. ++-+.--.|...||..|+.+=+.. ...-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999854 332222267789999999764431 234479999865
No 127
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=68.12 E-value=1.6 Score=35.01 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=33.7
Q ss_pred CCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHcc---CCccccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGL---FRRVTCPLCRDFLDS 107 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~---~~~~~CP~Cr~~~~~ 107 (139)
.+...| ||...+..+..+... .|.--||..|+.-=-.. -..-.||.|+....+
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 91 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGS 91 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCS
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcCc
Confidence 344456 998877544444444 68999999998542210 024689999865443
No 128
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=67.55 E-value=4.9 Score=25.47 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=30.1
Q ss_pred CCCCCcccccccccccCCCeeEEc---CCCCcccHHHHHHHHcc--CCccccccccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIREL---RCDHIFHRVCLDQWVGL--FRRVTCPLCRDFL 105 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l---~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~~ 105 (139)
....+..|.+|.+. ..+..- .|...||..|+. |.. +..=.||.|.-..
T Consensus 11 ~~~~~~~C~~C~~~----G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 11 KQMHEDYCFQCGDG----GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CCSSCSSCTTTCCC----SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred cCCCCCCCCcCCCC----CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 34567789999832 233332 377899999998 542 1234688776443
No 129
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=67.00 E-value=0.67 Score=27.73 Aligned_cols=45 Identities=29% Similarity=0.604 Sum_probs=26.3
Q ss_pred ccccccccccCCCeeEEc-CCCCcccHHHHHHHHccC--Cc-cccccccc
Q 038790 58 ECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGLF--RR-VTCPLCRD 103 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~~--~~-~~CP~Cr~ 103 (139)
.|.+|...-..+ .+..- .|...||..|+.+=|... .. =.||.|+.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666553222 22111 688999999988765421 22 47888875
No 130
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.69 E-value=2.7 Score=29.83 Aligned_cols=33 Identities=18% Similarity=0.454 Sum_probs=23.7
Q ss_pred CCcccccccccccCCCeeEEc-CCCCcccHHHHH
Q 038790 55 EAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLD 87 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~ 87 (139)
++..|.+|...|..-..-... .||++||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 357899999998754332223 699999998844
No 131
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=66.54 E-value=13 Score=22.42 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=28.0
Q ss_pred CCCCcccccccccccCCCeeEEcC--CCCcccHHHHHHHHc
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELR--CDHIFHRVCLDQWVG 91 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~--C~H~fh~~Ci~~Wl~ 91 (139)
......|.+|.+.++..- ....| =.|.||-.|-+..++
T Consensus 12 ~~a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp SCCSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHH
T ss_pred CCCeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHH
Confidence 355678999999988543 33332 269999999999887
No 132
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=66.22 E-value=6.8 Score=25.70 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHH------c---cCCccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWV------G---LFRRVTCPLCRD 103 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl------~---~~~~~~CP~Cr~ 103 (139)
+..+..|.+|.+. ..+..- .|-..||..||.+-+ + ....=.|++|+.
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4456679999954 332222 678999999999752 1 123458999964
No 133
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=65.57 E-value=1.3 Score=27.97 Aligned_cols=47 Identities=23% Similarity=0.418 Sum_probs=28.7
Q ss_pred ccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCcccccccccc
Q 038790 58 ECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRDF 104 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~ 104 (139)
.|.+|.+.-....-+.--.|...||..|+.+=+.. +..-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777765332222222278899999999864441 134578888654
No 134
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.51 E-value=8.7 Score=21.92 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=31.4
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
...|+-|-+.+..++.+.. -+..||..| ..|..|+.+|....
T Consensus 9 ~~~C~~C~~~I~~~~~v~a--~~~~~H~~C----------F~C~~C~~~L~~~~ 50 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS--LGKDWHKFC----------LKCERCSKTLTPGG 50 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE--TTEEEETTT----------CBCSSSCCBCCTTS
T ss_pred CCCCcCCCCEeECCeEEEE--CCeEeeCCC----------CCCCCCCCccCCCc
Confidence 5679999999887776543 478899755 45889988887543
No 135
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.98 E-value=2.3 Score=26.26 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=29.2
Q ss_pred CCCcccccccccccCCCeeEEc-C--CC-CcccHHHHHHHHcc--CCcccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-R--CD-HIFHRVCLDQWVGL--FRRVTCPLCRDFLD 106 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~~~ 106 (139)
.+...| ||..... +. +..- . |. .-||..|+. +.. ..+-.||.|+....
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 345567 9988643 32 2111 3 44 579999998 431 23568999976543
No 136
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=64.61 E-value=1.4 Score=31.76 Aligned_cols=45 Identities=29% Similarity=0.609 Sum_probs=25.2
Q ss_pred ccccccccccCCCeeEEc-CCCCcccHHHHHHHHccC--C-ccccccccc
Q 038790 58 ECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGLF--R-RVTCPLCRD 103 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~~--~-~~~CP~Cr~ 103 (139)
.|.+|...=..+ .+... .|...||..|+.+=+... . .=.||.|+.
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 578887642222 22222 688999999998655421 2 347999964
No 137
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=63.79 E-value=0.64 Score=29.76 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=30.2
Q ss_pred ccccccccccCCCeeEEcCCCCcccHHHHHHHHcc--CCcccccccccccc
Q 038790 58 ECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGL--FRRVTCPLCRDFLD 106 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr~~~~ 106 (139)
.|.||...-..++-+.--.|...||..|+.+=+.. +..=.||.|+..+.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 58888875333332222278899999998864431 12346888876543
No 138
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=62.93 E-value=3.5 Score=29.47 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=24.4
Q ss_pred CCcccccccccccCCCeeEEc-CCCCcccHHHHHH
Q 038790 55 EAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQ 88 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~ 88 (139)
++..|.+|...|..-..-... .||.+||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 356899999999854332222 7999999999544
No 139
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.23 E-value=4.4 Score=27.37 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCCcccccccccccCC--CeeEEcCCCCcccHHHHHHHHccCCccccccccc
Q 038790 54 NEAVECAVCLCEIEEG--EEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRD 103 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~--~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~ 103 (139)
..+..|++|..+|..- ....-..|+|.+|..|- .|......=.|-+|..
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 3578899999987533 33333479999999885 2332112335666643
No 140
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=59.65 E-value=1.2 Score=21.37 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=9.6
Q ss_pred cccccccccccccC
Q 038790 95 RVTCPLCRDFLDSR 108 (139)
Q Consensus 95 ~~~CP~Cr~~~~~~ 108 (139)
+..||+|+...+..
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 45788888766543
No 141
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=59.38 E-value=4.8 Score=26.54 Aligned_cols=32 Identities=13% Similarity=0.333 Sum_probs=22.5
Q ss_pred CCCcccccccccccC--CCeeEEcCCCCcccHHH
Q 038790 54 NEAVECAVCLCEIEE--GEEIRELRCDHIFHRVC 85 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~--~~~~~~l~C~H~fh~~C 85 (139)
.+...|.+|..+|.. +....-..|.|.+|..|
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CCCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 457889999999853 22333337888888877
No 142
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.33 E-value=11 Score=21.90 Aligned_cols=42 Identities=31% Similarity=0.667 Sum_probs=31.4
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
.....|+-|-+.+..++.+..+ +..||.+| ..|-.|+.+|..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~--~~~wH~~C----------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLAL--DKQWHVSC----------FKCQTCSVILTG 54 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEET--TEEECTTT----------CBCSSSCCBCSS
T ss_pred CCCCCCcCcCCeeCCCeEEEEC--Cccccccc----------CCcCcCCCCcCC
Confidence 4466799999998876665544 77899755 568889888863
No 143
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=57.78 E-value=5.4 Score=22.87 Aligned_cols=39 Identities=31% Similarity=0.628 Sum_probs=22.1
Q ss_pred ccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 58 ECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
.|+-|.+.+..++.+..+ +..||..| ..|..|+.+|...
T Consensus 2 ~C~~C~~~I~~~~~v~a~--~~~~H~~C----------F~C~~C~~~L~~~ 40 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL--GKDWHRPC----------LKCEKCGKTLTSG 40 (76)
T ss_dssp BCTTTSSBCCGGGEEEET--TEEEETTT----------CBCTTTCCBCCTT
T ss_pred cCCCCCCEEECceEEEEC--CccccCCC----------CCccccCccCCCC
Confidence 366666666544444333 66666544 3466666666554
No 144
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=57.10 E-value=4.8 Score=21.74 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=27.8
Q ss_pred ccccccccccCCCeeEEc--CCCCcccHHHHHHHHcc--CCcccccccc
Q 038790 58 ECAVCLCEIEEGEEIREL--RCDHIFHRVCLDQWVGL--FRRVTCPLCR 102 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~Wl~~--~~~~~CP~Cr 102 (139)
.|.+|..++..+.....- .|..-||..|+.---.. ..+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 377888887655544433 48889999997532110 1456788774
No 145
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.51 E-value=10 Score=21.65 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=28.4
Q ss_pred CcccccccccccC--CCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 56 AVECAVCLCEIEE--GEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 56 ~~~C~ICl~~~~~--~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
...|+-|-+.+.. +... +..-+..||.+| ..|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~C----------F~C~~C~~~L~~~ 48 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICFQDSQWHSEC----------FNCGKCSVSLVGK 48 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEETTEEEEGGG----------CBCTTTCCBCSSS
T ss_pred CCCCccCCCcccCCCCcee-EEECCcccCccc----------CChhhCCCcCCCC
Confidence 4569999998884 2222 223478899866 4588888888643
No 146
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=54.68 E-value=2.7 Score=23.60 Aligned_cols=44 Identities=27% Similarity=0.604 Sum_probs=26.7
Q ss_pred CCcccccccccccCCCeeEEc-C--CC-CcccHHHHHHHHcc--CCccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIREL-R--CD-HIFHRVCLDQWVGL--FRRVTCPLCRD 103 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~Wl~~--~~~~~CP~Cr~ 103 (139)
+..-| ||..... + .+..- . |. .-||..|+. +.. ...-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 45556 8987632 2 33222 4 44 579999998 442 23458888864
No 147
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=54.39 E-value=7.9 Score=22.44 Aligned_cols=42 Identities=33% Similarity=0.676 Sum_probs=29.7
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
...|+.|.+.+..++.+.. -+..||.+| ..|-.|+.+|....
T Consensus 7 ~~~C~~C~~~I~~~~~~~a--~~~~~H~~C----------F~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC--DGRSFHRCC----------FLCMVCRKNLDSTT 48 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE--TTEEEESSS----------EECSSSCCEECSSC
T ss_pred CCcCcCcCccccCceeEEe--CCccccccc----------CccCCCCCCCCCCC
Confidence 5679999999876665443 477888754 45888888886653
No 148
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=54.16 E-value=5.3 Score=25.05 Aligned_cols=12 Identities=42% Similarity=0.902 Sum_probs=11.1
Q ss_pred cccHHHHHHHHc
Q 038790 80 IFHRVCLDQWVG 91 (139)
Q Consensus 80 ~fh~~Ci~~Wl~ 91 (139)
.||+.|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999997
No 149
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=53.75 E-value=5.4 Score=24.96 Aligned_cols=12 Identities=42% Similarity=0.933 Sum_probs=11.0
Q ss_pred cccHHHHHHHHc
Q 038790 80 IFHRVCLDQWVG 91 (139)
Q Consensus 80 ~fh~~Ci~~Wl~ 91 (139)
.||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999996
No 150
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=53.16 E-value=16 Score=24.82 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=25.3
Q ss_pred CCCCcccccccccccCCCeeEEc---CCCCcccHHHHHHHHc
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL---RCDHIFHRVCLDQWVG 91 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l---~C~H~fh~~Ci~~Wl~ 91 (139)
+..+..|.||-+. ..+..- .|...|+..||+..+.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 3446679999854 344333 4889999999999886
No 151
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=52.56 E-value=2.9 Score=32.30 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred CCCcccccccccccCCCeeE-EcCCCCcccHHHHHHHHcc-----CCcccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIR-ELRCDHIFHRVCLDQWVGL-----FRRVTCPLCRDF 104 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~-~l~C~H~fh~~Ci~~Wl~~-----~~~~~CP~Cr~~ 104 (139)
.+...|.+|...|..-..-. .-.||++||..|....+.. +....|-.|-..
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 34567999999987433211 2269999999998766521 123556666443
No 152
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=51.05 E-value=7.7 Score=21.85 Aligned_cols=43 Identities=26% Similarity=0.493 Sum_probs=27.4
Q ss_pred cccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCccccccc
Q 038790 57 VECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLC 101 (139)
Q Consensus 57 ~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~C 101 (139)
..|.-|...+......+--.|++.|+.+| +..+. +.--+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiH-e~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVH-DSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHH-HHTTT-TTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccch-hHHHH-hhccCCcCC
Confidence 45999999885322122236999999999 33332 144578877
No 153
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=50.39 E-value=9 Score=21.99 Aligned_cols=50 Identities=24% Similarity=0.501 Sum_probs=31.2
Q ss_pred CCCCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHc-cCCccccccccc
Q 038790 52 NDNEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVG-LFRRVTCPLCRD 103 (139)
Q Consensus 52 ~~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~-~~~~~~CP~Cr~ 103 (139)
...+...| ||..... +..+..- .|..-||..|+.---. ....-.||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34456678 9988755 3333333 6889999999864221 013467888864
No 154
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=49.17 E-value=13 Score=20.39 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=28.4
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
...|+-|.+.+. ++. +..-+..||..| ..|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a~~~~~H~~C----------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNAMGKQWHVEH----------FVCAKCEKPFLGH 44 (66)
T ss_dssp CCEETTTTEECC-SCE--ECCTTSBEETTT----------CBCTTTCCBCSSS
T ss_pred CCCCcccCCEec-ceE--EEECccccccCc----------CEECCCCCCCCCC
Confidence 457999999887 443 334578899755 4588898888653
No 155
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.89 E-value=24 Score=20.75 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=30.5
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
.....|+-|-+.+. ++.+. .-+..||..| ..|-.|+.+|....
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~--a~~~~~H~~C----------F~C~~C~~~L~~~~ 65 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLV--ALGKSWHPEE----------FNCAHCKNTMAYIG 65 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEE--ETTEEECTTT----------CBCSSSCCBCSSSC
T ss_pred CCCCCCccCCCEec-ceEEE--ECCccccccC----------CccCCCCCCCCCCE
Confidence 34667999999985 44443 3478899755 56889998887543
No 156
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.60 E-value=16 Score=21.09 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=30.3
Q ss_pred CCCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 53 DNEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
......|+-|-+.+. ++.+ ..-+..||..| ..|-.|+.+|...
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v--~a~~~~~H~~C----------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPL--IFKNDPYHPDH----------FNCANCGKELTAD 54 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCC--CCSSSCCCTTT----------SBCSSSCCBCCTT
T ss_pred ccCCCCCccCCCEec-ceEE--EECcceeCCCC----------CEeCCCCCccCCC
Confidence 344667999999888 3433 23477888754 5688999888765
No 157
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.54 E-value=23 Score=19.61 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=27.6
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
....|+-|.+.+.. +.+.. -+..||.+| ..|-.|+.+|...
T Consensus 4 ~~~~C~~C~~~I~~-~~~~a--~~~~~H~~C----------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-RVIKA--MNNSWHPEC----------FRCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCS-CCEEE--TTEEECTTT----------SBCSSSCCBCSSS
T ss_pred CCCcCccCCCEecc-eEEEE--CcccccccC----------CEeCCCCCcCCCC
Confidence 35678899888773 33333 367888755 4577888877765
No 158
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.96 E-value=21 Score=20.40 Aligned_cols=40 Identities=18% Similarity=0.459 Sum_probs=27.5
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
...|+-|.+.+. +..+. .-+..||.+| ..|-.|..+|...
T Consensus 15 ~~~C~~C~~~I~-~~~~~--a~~~~~H~~C----------F~C~~C~~~L~~g 54 (81)
T 1x6a_A 15 GEFCHGCSLLMT-GPFMV--AGEFKYHPEC----------FACMSCKVIIEDG 54 (81)
T ss_dssp SCBCTTTCCBCC-SCCBC--CTTCCBCTTS----------CBCTTTCCBCCTT
T ss_pred CCcCccCCCCcC-ceEEE--ECCceecccc----------CCccCCCCccCCC
Confidence 346999998887 33332 3478888644 5688898888653
No 159
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.80 E-value=22 Score=20.04 Aligned_cols=45 Identities=18% Similarity=0.452 Sum_probs=30.8
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
.....|+-|.+.+..++.+.. .-+..||..| ..|-.|.+++....
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C----------F~C~~C~~~L~~~~ 53 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVN-SNGELYHEQC----------FVCAQCFQQFPEGL 53 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEE-ETTEEECTTT----------CCCTTTCCCCGGGC
T ss_pred CCCCCchhcCCccCCCceEEE-eCccEecccc----------CeECCCCCCCCCCC
Confidence 346789999999875444321 2377888755 45888888887654
No 160
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.96 E-value=31 Score=20.26 Aligned_cols=43 Identities=23% Similarity=0.535 Sum_probs=29.7
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
....|+-|-+.+...+.+ ..-+..||..| ..|-.|..+|....
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~C----------F~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISC----------FRCSYCNNKLSLGT 56 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTT----------CBCTTTCCBCCTTT
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCC----------CeeCCCCCCCCCCC
Confidence 456799999998766544 34578888766 34777777776543
No 161
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.66 E-value=28 Score=19.27 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=29.7
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
...|+-|.+.+..++.+ +..-+..||..| ..|-.|..+|....
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C----------F~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHC----------FLCSGCEQPLGSRS 47 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTT----------CBCTTTCCBTTTSC
T ss_pred CCCCccCCCccccCccE-EEECccccCccc----------CeECCCCCcCCCCc
Confidence 45799999998864332 233578899755 45888888886643
No 162
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.59 E-value=34 Score=18.95 Aligned_cols=42 Identities=24% Similarity=0.498 Sum_probs=27.2
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
....|+-|.+.+..++.+ +..=+..||..| ..|-.|..+|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C----------F~C~~C~~~L~~ 45 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAG-VVALDRVFHVGC----------FVCSTCRAQLRG 45 (72)
T ss_dssp CCCCCSSSCSCCCSSSCC-EECSSSEECTTT----------CBCSSSCCBCTT
T ss_pred CCCCCccCCCccCCCceE-EEECCCeEcccC----------CcccccCCcCCc
Confidence 356788998887754322 223477888755 458888888753
No 163
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=44.38 E-value=2.9 Score=23.44 Aligned_cols=45 Identities=31% Similarity=0.630 Sum_probs=27.3
Q ss_pred CCCcccccccccccCCCeeEEc-C--CC-CcccHHHHHHHHcc--CCccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIREL-R--CD-HIFHRVCLDQWVGL--FRRVTCPLCRD 103 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~Wl~~--~~~~~CP~Cr~ 103 (139)
++..-| ||.+... + .+..- . |. .-||..|+. +.. ..+-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 345557 8987632 3 33222 4 55 689999998 431 13458898864
No 164
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.65 E-value=28 Score=19.14 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=26.7
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
...|+-|.+.+.. +.+.. -+..||.+| ..|-.|..+|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a--~~~~~H~~C----------F~C~~C~~~L~~~ 44 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY--QDQPWHADC----------FVCVTCSKKLAGQ 44 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE--TTEEECTTT----------TBCTTTCCBCTTS
T ss_pred cCCCcccCCEeCc-ceEEE--CccccccCc----------CEECCCCCCCCCC
Confidence 4568888888764 33333 367888755 4578888887643
No 165
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=43.03 E-value=18 Score=19.91 Aligned_cols=41 Identities=22% Similarity=0.549 Sum_probs=28.3
Q ss_pred cccccccccccCC-CeeEEcCCCCccc--HHHHHHHHccCCcccccccccccccCc
Q 038790 57 VECAVCLCEIEEG-EEIRELRCDHIFH--RVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 57 ~~C~ICl~~~~~~-~~~~~l~C~H~fh--~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
..|+-|.+.+..+ ..+.. -+..|| .+| ..|-.|+.+|....
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C----------F~C~~C~~~L~~~~ 46 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTEC----------FLCSCCSKCLIGQK 46 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTT----------SBCTTTCCBCTTSC
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCC----------EECCCCCCcCCCCc
Confidence 4688899988864 44433 378888 755 45888888886443
No 166
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=42.28 E-value=3.7 Score=23.78 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=13.3
Q ss_pred HHHHccCCccccccccccccc
Q 038790 87 DQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 87 ~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
+.|+. .--.||+|+.++..
T Consensus 4 d~~LL--eiL~CP~ck~~L~~ 22 (67)
T 2jny_A 4 DPQLL--EVLACPKDKGPLRY 22 (67)
T ss_dssp CGGGT--CCCBCTTTCCBCEE
T ss_pred CHHHH--HHhCCCCCCCcCeE
Confidence 34555 66789999987754
No 167
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=42.01 E-value=9.7 Score=23.77 Aligned_cols=40 Identities=18% Similarity=0.506 Sum_probs=25.6
Q ss_pred CcccccccccccCCCeeE-EcCCCCcccHHHHHHHHccCCcccccccccccc
Q 038790 56 AVECAVCLCEIEEGEEIR-ELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~-~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
+..|+.|-.+++...... --.|...| . ....||-|.++|.
T Consensus 32 ~~~CP~Cq~eL~~~g~~~hC~~C~~~f---------~--~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNGHARCRSCGEFI---------E--MKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEETTEEEETTTCCEE---------E--EEEECTTTCSBCE
T ss_pred cccCccCCCcceecCCEEECccccchh---------h--ccccCcchhhHHH
Confidence 478999998876433222 12454433 2 5789999988774
No 168
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.94 E-value=21 Score=19.80 Aligned_cols=42 Identities=21% Similarity=0.503 Sum_probs=28.8
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
...|+-|.+.+..++.+.. .-+..||..| ..|-.|..+|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C----------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKME-YKGSSWHETC----------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEE-ETTEEEETTT----------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEE-ECcCeecccC----------CcccccCCccCCC
Confidence 4579999999887543222 2477888755 4588888887665
No 169
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.83 E-value=5.6 Score=24.88 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=9.0
Q ss_pred ccccccccccccc
Q 038790 95 RVTCPLCRDFLDS 107 (139)
Q Consensus 95 ~~~CP~Cr~~~~~ 107 (139)
...||+|.+++.+
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 5578888776654
No 170
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.69 E-value=33 Score=18.89 Aligned_cols=40 Identities=23% Similarity=0.540 Sum_probs=27.5
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
...|+-|.+.+.. +. +..-+..||.+| ..|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~C----------F~C~~C~~~L~~~ 44 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GG--VTYREQPWHKEC----------FVCTACRKQLSGQ 44 (70)
T ss_dssp CCBCSSSCCBCCS-SE--EESSSSEEETTT----------SBCSSSCCBCTTS
T ss_pred CCCCcccCCeecc-ce--EEECccccCCCC----------CccCCCCCcCCcC
Confidence 4579999988874 33 234578888755 4588888888644
No 171
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.85 E-value=26 Score=20.05 Aligned_cols=43 Identities=28% Similarity=0.557 Sum_probs=28.9
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCccc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAV 111 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~ 111 (139)
...|+-|.+.+. ++.+.. -+..||..| ..|-.|+++|......
T Consensus 15 ~~~C~~C~~~I~-~~~v~a--~~~~wH~~C----------F~C~~C~~~L~~~~~~ 57 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEVVSA--LGKTYHPDC----------FVCAVCRLPFPPGDRV 57 (81)
T ss_dssp CCBCTTTCCBCC-SCCEEE--TTEEECTTT----------SSCSSSCCCCCSSSCE
T ss_pred CCcCccccCEec-cceEEE--CCceeCccC----------CccccCCCCCCCCCEE
Confidence 347999999887 344433 477888755 4577888887654433
No 172
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=40.52 E-value=3.7 Score=23.25 Aligned_cols=44 Identities=30% Similarity=0.625 Sum_probs=27.1
Q ss_pred CCcccccccccccCCCeeEEc-C--CC-CcccHHHHHHHHcc--CCccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIREL-R--CD-HIFHRVCLDQWVGL--FRRVTCPLCRD 103 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l-~--C~-H~fh~~Ci~~Wl~~--~~~~~CP~Cr~ 103 (139)
+..-| ||.+... + .+..- . |. .-||..|+. +.. ..+-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 45556 8987632 3 33222 4 44 789999988 331 13568998865
No 173
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=40.51 E-value=4.3 Score=23.63 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=10.6
Q ss_pred Cccccccccccccc
Q 038790 94 RRVTCPLCRDFLDS 107 (139)
Q Consensus 94 ~~~~CP~Cr~~~~~ 107 (139)
.--.||.|+.++..
T Consensus 7 eiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 7 DILACPICKGPLKL 20 (69)
T ss_dssp GTCCCTTTCCCCEE
T ss_pred hheeCCCCCCcCeE
Confidence 56689999887764
No 174
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.23 E-value=31 Score=20.52 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=27.2
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
+-..|..|...+....-.. .=+..|+..|..+ .....|..|.+++.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~--~~g~~yC~~cy~~----~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVA--KDNKILCNKCTTR----EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEE--ETTEEECHHHHTT----CCCCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCCcCeeEC--cCCEEEChhHhhh----hcCCccccCCCccccC
Confidence 4566777777664322111 1245666666432 1456788888877653
No 175
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=39.03 E-value=15 Score=29.08 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=32.1
Q ss_pred ccccccccccCCCeeEEc-CCCCcccHHHHHHHHcc---CCcccccccccccccC
Q 038790 58 ECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGL---FRRVTCPLCRDFLDSR 108 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~---~~~~~CP~Cr~~~~~~ 108 (139)
...||...+..+..+... .|..-||..|+.-=-.. ...-.||.|+....+.
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~ 60 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPS 60 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCc
Confidence 345888876544444444 68899999999531110 0346899998755444
No 176
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.64 E-value=50 Score=18.21 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=28.9
Q ss_pred CCcccccccccccC--CCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 55 EAVECAVCLCEIEE--GEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 55 ~~~~C~ICl~~~~~--~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
....|+-|-+.+.. ++.+ +..-+..||.+| ..|-.|+.+|...
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~C----------F~C~~C~~~L~~~ 48 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKY-ISFEERQWHNDC----------FNCKKCSLSLVGR 48 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSC-EECSSCEECTTT----------CBCSSSCCBCTTS
T ss_pred CCCCCcCCCccccCCCCcce-EEECCcccCccc----------CEeccCCCcCCCC
Confidence 35679999998875 2232 223578899755 4588888887643
No 177
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=37.54 E-value=29 Score=26.96 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=23.5
Q ss_pred CCCcccccccccccCCCeeEEc---CCCCcccHHHHHHHHc
Q 038790 54 NEAVECAVCLCEIEEGEEIREL---RCDHIFHRVCLDQWVG 91 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l---~C~H~fh~~Ci~~Wl~ 91 (139)
..+..|.+|-+. ..+... .|...||..||+..+.
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTC
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcC
Confidence 345668888754 222222 5889999999999984
No 178
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=37.18 E-value=35 Score=21.39 Aligned_cols=51 Identities=18% Similarity=0.467 Sum_probs=30.5
Q ss_pred CCcccccccccccC-CCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 55 EAVECAVCLCEIEE-GEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 55 ~~~~C~ICl~~~~~-~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
+-..|..|...+.. +.... ..=+..|+..|-..-+. ....|..|..++.+.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~~y~~~~~--~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLFG--QDGLCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEE-EETTEEECHHHHHHHHC--CCEECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEE-EECCEEeecCchhhhCC--CccChhhcCCccCcc
Confidence 45677778777753 22211 12356777777666544 344788888877653
No 179
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.17 E-value=36 Score=19.39 Aligned_cols=43 Identities=21% Similarity=0.571 Sum_probs=30.4
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
...|+-|.+.+.+++.+. ..=+..||..| ..|-.|+++|....
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C----------F~C~~C~~~L~~~~ 57 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDC----------FTCSNCKQVIGTGS 57 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTT----------CCCSSSCCCCTTSC
T ss_pred CCcCccCCcccccCceEE-EECcccccccc----------CchhhCCCccCCCc
Confidence 467999999988765432 23478899755 45888888887653
No 180
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.97 E-value=7.6 Score=22.47 Aligned_cols=49 Identities=22% Similarity=0.376 Sum_probs=27.4
Q ss_pred CCcccccccccccCCCeeEEc-CCC---CcccHHHHHHHHccCCcccccccccccc
Q 038790 55 EAVECAVCLCEIEEGEEIREL-RCD---HIFHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l-~C~---H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
+...| ||.... .+ .+..- .|. .-||..|+.-=-.....-.||.|+....
T Consensus 5 ~~~yC-~C~~~~-~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 5 SSGYC-ICNQVS-YG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCCCS-TTSCCC-CS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred CCeEE-EcCCCC-CC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcccc
Confidence 34556 587652 33 22222 332 6899999983111123568999976554
No 181
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.44 E-value=38 Score=19.28 Aligned_cols=42 Identities=29% Similarity=0.567 Sum_probs=28.9
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
....|+-|.+.+.. ..+.. -+..||..| ..|..|..+|....
T Consensus 14 ~~~~C~~C~~~I~~-~~~~a--~~~~~H~~C----------F~C~~C~~~L~~~~ 55 (81)
T 2dlo_A 14 TLEKCATCSQPILD-RILRA--MGKAYHPGC----------FTCVVCHRGLDGIP 55 (81)
T ss_dssp SCCBCTTTCCBCCS-CCEEE--TTEEECTTT----------CBCSSSCCBCTTSC
T ss_pred CCCccccCCCeecc-eeEEE--CCccccHHh----------cCcccCCCccCCCe
Confidence 45679999988873 33333 477888755 46888988887543
No 182
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=35.37 E-value=9.2 Score=17.77 Aligned_cols=15 Identities=27% Similarity=0.904 Sum_probs=10.0
Q ss_pred CcccccccccccccC
Q 038790 94 RRVTCPLCRDFLDSR 108 (139)
Q Consensus 94 ~~~~CP~Cr~~~~~~ 108 (139)
-+..||+|.+.++..
T Consensus 5 f~vqcpvcqq~mpaa 19 (29)
T 3vhs_A 5 FQVQCPVCQQMMPAA 19 (29)
T ss_dssp CEEECTTTCCEEEGG
T ss_pred eeeeChHHHHhCcHH
Confidence 356799997755443
No 183
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.29 E-value=42 Score=18.84 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=30.6
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCcccccCCceE
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAVVENGIEI 118 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~~~~~~~~ 118 (139)
...|+-|.+.+.. +.+ ..-+..||.+| ..|-.|..+|.........+.++
T Consensus 5 ~~~C~~C~~~I~~-~~v--~a~~~~wH~~C----------F~C~~C~~~L~~~~~f~~~~~~~ 54 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVL--EAGEKHYHPSC----------ALCVRCGQMFAEGEEMYLQGSSI 54 (73)
T ss_dssp CCSCSSSCCCCSS-CCB--CCSSCCBCTTT----------SCCSSSCCCCCSSCCCEEETTEE
T ss_pred cCCcccCCCEecC-eeE--EeCCCCCCCCc----------CEeCCCCCCCCCCCeeEeeCCEE
Confidence 4568888888764 322 24577888755 45778888776444443334444
No 184
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=35.28 E-value=8.9 Score=22.28 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=7.8
Q ss_pred cccccccccccc
Q 038790 95 RVTCPLCRDFLD 106 (139)
Q Consensus 95 ~~~CP~Cr~~~~ 106 (139)
...||+|.+++.
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 446777777665
No 185
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=35.19 E-value=27 Score=21.82 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=38.5
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC-cccccCCceEE
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR-RAVVENGIEIL 119 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~-~~~~~~~~~~~ 119 (139)
.+-..|..|...+... .. ...=+..|+..|-..- ....|+.|..++.+. ......+...+
T Consensus 28 ~~CF~C~~C~~~L~~~-~f-~~~~g~~yC~~cy~~~----~~~~C~~C~~~I~~~~~~~~a~~~~~H 88 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGE-IY-VMVNDKPVCKPCYVKN----HAVVCQGCHNAIDPEVQRVTYNNFSWH 88 (126)
T ss_dssp GGGSBCTTTCCBCTTS-EE-EEETTEEEEHHHHHHH----SCCBCTTTCSBCCTTSCEEEETTEEEE
T ss_pred CCCCCcCCCCCCCCcC-EE-EeECCEEechHHhCcC----cCccCcccCCcCCcCceEEECCCCEee
Confidence 3567888888887632 22 2234678888887663 457899999998864 33444444444
No 186
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.02 E-value=20 Score=21.48 Aligned_cols=40 Identities=28% Similarity=0.647 Sum_probs=22.6
Q ss_pred cccccccccccCCCeeEE-cCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 57 VECAVCLCEIEEGEEIRE-LRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 57 ~~C~ICl~~~~~~~~~~~-l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
..|+.|-.++..+..... ..|+-.| . ....||-|.+++..
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~---------~--~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDF---------S--LQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEE---------E--EEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCCceECccccccC---------C--CcccCcchhhHHHH
Confidence 468888887765443221 1344332 1 34577877776643
No 187
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=34.18 E-value=6 Score=25.04 Aligned_cols=23 Identities=22% Similarity=0.619 Sum_probs=15.4
Q ss_pred CCCCcccHHHHHHHHccCCccccccccccc
Q 038790 76 RCDHIFHRVCLDQWVGLFRRVTCPLCRDFL 105 (139)
Q Consensus 76 ~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~ 105 (139)
.||..|. .= ......||.|+..-
T Consensus 72 ~CG~~F~-----~~--~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AE--INIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CC--SSCCSSCSSSCCCC
T ss_pred hCcCeec-----cc--CCCCCCCcCCCCCc
Confidence 5899981 11 12568999998743
No 188
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=33.83 E-value=49 Score=18.03 Aligned_cols=43 Identities=19% Similarity=0.513 Sum_probs=30.7
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
....|+-|.+.+..++.+.. .=+..||..| ..|-.|..++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~C----------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQC----------FVCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTT----------SSCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCC----------CcccCCCCCCCCC
Confidence 45679999999887665432 2467888766 3588888888765
No 189
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.57 E-value=45 Score=18.83 Aligned_cols=41 Identities=20% Similarity=0.480 Sum_probs=28.4
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
...|+-|.+.+.. +.+.. -+..||..| ..|-.|+.+|....
T Consensus 15 ~~~C~~C~~~I~~-~~v~a--~~~~~H~~C----------F~C~~C~~~L~~~~ 55 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLSA--MDTVWHPEC----------FVCGDCFTSFSTGS 55 (80)
T ss_dssp SCBCTTTCCBCCS-SCEEE--TTEEECTTT----------CBCSSSCCBSCSSC
T ss_pred CCccccCCCeecc-eeEEE--CCCeEecCc----------CChhhCCCCCCCCc
Confidence 4579999988875 33433 367888755 45888988887653
No 190
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=32.20 E-value=26 Score=23.68 Aligned_cols=39 Identities=8% Similarity=-0.035 Sum_probs=20.1
Q ss_pred cccccccccccccCcccccCCceEEEeecccccCCCCCCc
Q 038790 95 RVTCPLCRDFLDSRRAVVENGIEILVFKRFCYLSSSSDRD 134 (139)
Q Consensus 95 ~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (139)
...-|+|+..+......+-.|.+..... .-+|++.++.+
T Consensus 12 ~~~~~~C~~~yG~~~GnQP~G~M~~~~~-~~sLpGy~~~g 50 (159)
T 3pg6_A 12 SGLVPRGSTSYGIQKGNQPEGSMVFTVS-RDSLPGYESFG 50 (159)
T ss_dssp -------------CCCCCCSEEEEEEEE-SSCCTTCTTSE
T ss_pred CCcccccCccCcccccCCCCCeEEEEec-CCCCCCCCCCC
Confidence 3456999999999998888888776555 78899877654
No 191
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.07 E-value=3.9 Score=23.73 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=10.3
Q ss_pred Cccccccccccccc
Q 038790 94 RRVTCPLCRDFLDS 107 (139)
Q Consensus 94 ~~~~CP~Cr~~~~~ 107 (139)
.--.||+|+.++..
T Consensus 7 ~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 7 DILVCPVTKGRLEY 20 (68)
T ss_dssp CCCBCSSSCCBCEE
T ss_pred hheECCCCCCcCeE
Confidence 45679999887754
No 192
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=31.62 E-value=46 Score=18.65 Aligned_cols=41 Identities=27% Similarity=0.528 Sum_probs=28.5
Q ss_pred CcccccccccccC---C-CeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 56 AVECAVCLCEIEE---G-EEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 56 ~~~C~ICl~~~~~---~-~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
...|+-|.+.+.. + ..+.. =+..||..| ..|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C----------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC----------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT----------CBCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeEEE--CcceeCccc----------CEehhcCCCCCCC
Confidence 4579999999884 2 33333 377899755 4588898888644
No 193
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.15 E-value=39 Score=21.14 Aligned_cols=51 Identities=12% Similarity=0.185 Sum_probs=32.5
Q ss_pred CcccccccccccC-CCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 56 AVECAVCLCEIEE-GEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 56 ~~~C~ICl~~~~~-~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
-..|..|...+.. +... ...=+..||..|...-+. ....|-.|..++....
T Consensus 32 CF~C~~C~~~L~~~~~~~-~~~~g~~yC~~cy~~~f~--~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSS-YTKSGMILCRNDYIRLFG--NSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHCCSSSCCCTTTSEECC-EEETTEEECHHHHHHHHC--CCCSSSCSSCCSCCEE
T ss_pred CCCcCCCCCcccccCCeE-EEECCeeecHHHHHHHcC--CCCccccCCCCcCchh
Confidence 4568888777752 1111 122356788888877665 4557999988887543
No 194
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.47 E-value=4 Score=23.71 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=9.6
Q ss_pred Cccccccccccccc
Q 038790 94 RRVTCPLCRDFLDS 107 (139)
Q Consensus 94 ~~~~CP~Cr~~~~~ 107 (139)
.--.||+|+.++..
T Consensus 7 ~iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 7 EILVCPLCKGPLVF 20 (68)
T ss_dssp EECBCTTTCCBCEE
T ss_pred hheECCCCCCcCeE
Confidence 34578888877654
No 195
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.33 E-value=67 Score=18.63 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
.....|.-|.+.+.. ..+ ..-+..||.+| ..|-.|...|....
T Consensus 23 ~~~~~C~~C~~~I~~-~~~--~a~~~~~H~~C----------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVV--KARDKYRHPEC----------FVCADCNLNLKQKG 65 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCE--ESSSCEECTTT----------CCCSSSCCCTTTSC
T ss_pred CcCCCcccCCCEecc-cEE--EECCceECccC----------CEecCCCCCCCCCC
Confidence 445679999999884 333 24578899765 45888988887643
No 196
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=28.74 E-value=34 Score=23.25 Aligned_cols=42 Identities=21% Similarity=0.511 Sum_probs=30.2
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRR 109 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~ 109 (139)
...|+.|.+.+..++.+..+ +..||..| ..|-.|+.+|....
T Consensus 115 ~~~C~~C~~~I~~~~~v~a~--~~~~H~~C----------F~C~~C~~~L~~~~ 156 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIGA--GKSWHKSC----------FRCAKCGKSLESTT 156 (192)
T ss_dssp CEECTTTSCEECSSSCEEET--TEEECTTT----------CBCTTTCCBCCSSS
T ss_pred CCcCCCCCCEecCcEEEecC--CCccchhc----------CCccccCCCCCCCc
Confidence 45699999998866655543 77888755 45888888886543
No 197
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=28.21 E-value=20 Score=21.56 Aligned_cols=32 Identities=25% Similarity=0.593 Sum_probs=21.0
Q ss_pred CcccccccccccCCCeeEEc--CCCCcccHHHHHH
Q 038790 56 AVECAVCLCEIEEGEEIREL--RCDHIFHRVCLDQ 88 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l--~C~H~fh~~Ci~~ 88 (139)
...|.||... ..|.-+.-. .|.-.||..|-..
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 5679999753 123333322 4888999999765
No 198
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=28.12 E-value=4.5 Score=23.61 Aligned_cols=14 Identities=29% Similarity=0.833 Sum_probs=9.4
Q ss_pred Cccccccccccccc
Q 038790 94 RRVTCPLCRDFLDS 107 (139)
Q Consensus 94 ~~~~CP~Cr~~~~~ 107 (139)
.--.||.|+.++..
T Consensus 7 ~iL~CP~ck~~L~~ 20 (70)
T 2js4_A 7 DILVCPVCKGRLEF 20 (70)
T ss_dssp CCCBCTTTCCBEEE
T ss_pred hheECCCCCCcCEE
Confidence 45678888876653
No 199
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=28.00 E-value=6.5 Score=24.09 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=27.3
Q ss_pred CCCCcccccccccccCCCeeEEc-CCC---CcccHHHHHHHHcc--CCcccccc-ccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL-RCD---HIFHRVCLDQWVGL--FRRVTCPL-CRD 103 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l-~C~---H~fh~~Ci~~Wl~~--~~~~~CP~-Cr~ 103 (139)
..+...| ||..... ++ +..- .|. .-||..|+. |.. ...-.||. |+.
T Consensus 23 ~~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 3445567 8987532 33 3222 343 579999987 331 23568999 975
No 200
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.96 E-value=44 Score=19.04 Aligned_cols=42 Identities=29% Similarity=0.467 Sum_probs=28.1
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccC
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSR 108 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~ 108 (139)
...|+-|.+.+..++.+. ..=+..||..| ..|-.|..+|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C----------F~C~~C~~~L~~~ 56 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSREL-FYEDRHFHEGC----------FRCCRCQRSLADE 56 (82)
T ss_dssp SCBCTTTCCBCCSSCCBC-CCSSCCCBTTT----------SBCTTTCCBCSSC
T ss_pred CCcCccCCCccccCcEEE-EeCCccccccC----------CeecCCCCccCCC
Confidence 457999999888433321 12477888755 4588898888644
No 201
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=26.22 E-value=22 Score=30.38 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=7.6
Q ss_pred cCCCCcccHHHHHHHHccCCccccccccccc
Q 038790 75 LRCDHIFHRVCLDQWVGLFRRVTCPLCRDFL 105 (139)
Q Consensus 75 l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~ 105 (139)
+...+.++..++..| ....||.|++..
T Consensus 174 ~~~~~~~~~~~~~~w----~~~~~~~c~h~~ 200 (854)
T 3ihp_A 174 LSADSASRKQEVQAW----DGEVRQVSKHAF 200 (854)
T ss_dssp TC--------------------CCCBCTTTT
T ss_pred HhcCCHHHHHHHHhh----cCccCCCCcCcc
Confidence 457788999999999 445588888754
No 202
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=25.57 E-value=79 Score=19.86 Aligned_cols=39 Identities=26% Similarity=0.511 Sum_probs=29.0
Q ss_pred CcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccc
Q 038790 56 AVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLD 106 (139)
Q Consensus 56 ~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~ 106 (139)
...|+-|-+.+.....+.. -+..||..| ..|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~C----------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA--MDSYWHSRC----------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE--TTEEEETTT----------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe--CCcEEcccc----------cCcCcCCCccc
Confidence 4679999999885443433 478899766 45889998886
No 203
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.48 E-value=19 Score=20.08 Aligned_cols=14 Identities=21% Similarity=0.665 Sum_probs=7.9
Q ss_pred Cccccccccccccc
Q 038790 94 RRVTCPLCRDFLDS 107 (139)
Q Consensus 94 ~~~~CP~Cr~~~~~ 107 (139)
....||.|+..+..
T Consensus 5 ~~k~CP~C~~~Iek 18 (60)
T 1wd2_A 5 NTKECPKCHVTIEK 18 (60)
T ss_dssp CCCCCTTTCCCCSS
T ss_pred cceECcCCCCeeEe
Confidence 34556666665544
No 204
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=25.00 E-value=73 Score=18.41 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=25.1
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHH
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQW 89 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~W 89 (139)
..+..|.+|.+.-.......-+.|.-.|+..|+..+
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~ 63 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 63 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHhh
Confidence 446789999865312233456689999999999874
No 205
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.84 E-value=26 Score=18.74 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=24.9
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCcccccccccccccCccc
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDSRRAV 111 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~~~~~ 111 (139)
....|.+|-..|........ . ..-.|+.|...+......
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~----------------~--~~~~C~~C~~~f~~~~~l 55 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR----------------R--KTPMCEKCRKDSCQEAAL 55 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC----------------S--SSCCCHHHHHTCSCCCSS
T ss_pred CCeeCCcccchhCCHHHhCc----------------C--CCCCCCCCChhhcCHHHH
Confidence 45789999888875543322 3 567788887766544433
No 206
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.75 E-value=60 Score=20.25 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=18.3
Q ss_pred CCcccccccccccCCCeeEEcCCCCcccHHHHHHHH
Q 038790 55 EAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWV 90 (139)
Q Consensus 55 ~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl 90 (139)
....|..|...+..++..... =+..||..|....+
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~-~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLI-NSDIVCEQDIYEWT 69 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEEC-SSSEEEGGGHHHHH
T ss_pred ccCccccCCCCCCCCCcEEee-CCEEEcHHHhHHHh
Confidence 455666666666444432222 34566666665554
No 207
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.38 E-value=24 Score=23.47 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=15.4
Q ss_pred cCCCCcccHHHHHHHHccCCccccccccccc
Q 038790 75 LRCDHIFHRVCLDQWVGLFRRVTCPLCRDFL 105 (139)
Q Consensus 75 l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~ 105 (139)
..|+|.|-.. . ....||.|..++
T Consensus 136 ~~Cg~~~~~~------~--~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 136 IGCGRKFSTL------P--PGGVCPDCGSKV 158 (165)
T ss_dssp SSSCCEESSC------C--GGGBCTTTCCBE
T ss_pred CCCCCcccCC------C--CCCcCCCCCCcc
Confidence 3588887532 1 356899998764
No 208
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.04 E-value=5.7 Score=23.55 Aligned_cols=14 Identities=29% Similarity=0.814 Sum_probs=12.2
Q ss_pred CCCCcccHHHHHHH
Q 038790 76 RCDHIFHRVCLDQW 89 (139)
Q Consensus 76 ~C~H~fh~~Ci~~W 89 (139)
.|++.|+..|-..|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 48999999998887
No 209
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.83 E-value=45 Score=22.56 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=13.8
Q ss_pred cCCCCcccHHHHHHHHccCCcccccccccc
Q 038790 75 LRCDHIFHRVCLDQWVGLFRRVTCPLCRDF 104 (139)
Q Consensus 75 l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~ 104 (139)
..||+++-. . ....||+|..+
T Consensus 142 ~~CG~i~~~-------~--~p~~CP~Cg~~ 162 (170)
T 3pwf_A 142 PICGYTAVD-------E--APEYCPVCGAP 162 (170)
T ss_dssp TTTCCEEES-------C--CCSBCTTTCCB
T ss_pred CCCCCeeCC-------C--CCCCCCCCCCC
Confidence 358887641 2 44589999764
No 210
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=22.71 E-value=3.4 Score=18.71 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=7.7
Q ss_pred cccHHHHHHHHc
Q 038790 80 IFHRVCLDQWVG 91 (139)
Q Consensus 80 ~fh~~Ci~~Wl~ 91 (139)
.||..|-++|+-
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 466677777764
No 211
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.57 E-value=97 Score=23.34 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=30.3
Q ss_pred CCCCcccccccccccCCCeeEEc-CCCCcccHHHHHHHHccCCccccccccc
Q 038790 53 DNEAVECAVCLCEIEEGEEIREL-RCDHIFHRVCLDQWVGLFRRVTCPLCRD 103 (139)
Q Consensus 53 ~~~~~~C~ICl~~~~~~~~~~~l-~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~ 103 (139)
......|+.=+.++-.|.+.... -||-.||.+- ....||+|.-
T Consensus 259 ~~~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~--------kG~lC~vC~l 302 (320)
T 3mkr_B 259 HNPFDICAASYRPIYRGKPVEKCPLSGACYSPEF--------KGQICKVTTV 302 (320)
T ss_dssp TSCCCBBTTTCCBCCTTSCCEECTTTCCEECGGG--------TTSBCTTTSS
T ss_pred CCccceecCCCccccCCCCCccCCCCCCeechhh--------CCCCCCCCcC
Confidence 34466788877776656655555 4999998744 6889999953
No 212
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.33 E-value=58 Score=18.43 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCcccccccccccCCCeeEEcCCCCcccHHHHHHHHccCCccccccccccccc
Q 038790 54 NEAVECAVCLCEIEEGEEIRELRCDHIFHRVCLDQWVGLFRRVTCPLCRDFLDS 107 (139)
Q Consensus 54 ~~~~~C~ICl~~~~~~~~~~~l~C~H~fh~~Ci~~Wl~~~~~~~CP~Cr~~~~~ 107 (139)
.....|+-|.+.+.. +.+ ..-+..||..| ..|-.|+.+|..
T Consensus 13 ~~~~~C~~C~~~I~~-~~~--~a~~~~~H~~C----------F~C~~C~~~L~~ 53 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-VFV--KLRDRHRHPEC----------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCSSSCCCCCS-SCE--ECSSCEECTTT----------TSCSSSCCCHHH
T ss_pred CCCCccccCCCCccC-cEE--EECcceeCcCc----------CeeCCCCCCCCC
Confidence 345679999998874 332 34578899766 357888887754
No 213
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=21.15 E-value=11 Score=23.47 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=11.7
Q ss_pred CcccccccccccccC
Q 038790 94 RRVTCPLCRDFLDSR 108 (139)
Q Consensus 94 ~~~~CP~Cr~~~~~~ 108 (139)
.--.||+|+.++...
T Consensus 7 dILaCP~cK~pL~l~ 21 (97)
T 2k5r_A 7 HLLCSPDTRQPLSLL 21 (97)
T ss_dssp SSCCCCTTSSCCEEC
T ss_pred hheECCCCCCccccc
Confidence 566899999987653
No 214
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.83 E-value=93 Score=19.00 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=18.0
Q ss_pred CCcccccccccccC-CCeeEEcCCCCcccHHHHHHHHc
Q 038790 55 EAVECAVCLCEIEE-GEEIRELRCDHIFHRVCLDQWVG 91 (139)
Q Consensus 55 ~~~~C~ICl~~~~~-~~~~~~l~C~H~fh~~Ci~~Wl~ 91 (139)
+-..|..|...+.. +... ...=+..|+..|-..-+.
T Consensus 29 ~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCC-CCBTTBCCCHHHHHHHHT
T ss_pred hcCcccccCCchhcCCCee-EEECCeeechHHHHHHhC
Confidence 45567777666652 2111 111245666666665544
No 215
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=20.54 E-value=62 Score=21.82 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=12.8
Q ss_pred ccccccccccCCCeeEEcCCCCcccHHH
Q 038790 58 ECAVCLCEIEEGEEIRELRCDHIFHRVC 85 (139)
Q Consensus 58 ~C~ICl~~~~~~~~~~~l~C~H~fh~~C 85 (139)
.|..|.+.+...+.+. ..-++.||..|
T Consensus 71 ~C~~C~~~I~~~e~~i-~a~~~~~H~~C 97 (188)
T 1rut_X 71 ACSACGQSIPASELVM-RAQGNVYHLKC 97 (188)
T ss_dssp ECTTTCCEECTTSEEE-EETTEEECGGG
T ss_pred ccccCCCccccCcEEE-EcCCCEEeCCC
Confidence 4666666555433221 12355566544
No 216
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.49 E-value=78 Score=17.77 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=10.4
Q ss_pred CCCCCccccccccc
Q 038790 52 NDNEAVECAVCLCE 65 (139)
Q Consensus 52 ~~~~~~~C~ICl~~ 65 (139)
...+...|.||...
T Consensus 5 ~~~d~~~C~iC~KT 18 (62)
T 2a20_A 5 QKGDAPTCGICHKT 18 (62)
T ss_dssp CSSCCCCCSSSSCS
T ss_pred ccCCcchhhhhccc
Confidence 34567789999964
No 217
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=20.34 E-value=90 Score=15.15 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 038790 2 LSYIVSVSTHLKWACKFL 19 (139)
Q Consensus 2 ~~~i~l~~~~l~~~~~~~ 19 (139)
++|+.++..++.+....+
T Consensus 5 isYf~fL~~al~~t~~lf 22 (32)
T 1q90_L 5 TSYVGLLIGALVFTLGIY 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678887777777664443
Done!