Query 038791
Match_columns 683
No_of_seqs 621 out of 4017
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:20:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 5.3E-32 1.1E-36 267.4 6.3 368 7-436 73-447 (483)
2 KOG4341 F-box protein containi 99.9 2.8E-26 6.2E-31 227.0 4.1 330 134-553 126-459 (483)
3 KOG2120 SCF ubiquitin ligase, 99.9 8.4E-25 1.8E-29 207.1 7.9 294 4-366 96-391 (419)
4 PLN00113 leucine-rich repeat r 99.9 8.5E-24 1.8E-28 253.2 13.2 435 111-629 114-582 (968)
5 PLN00113 leucine-rich repeat r 99.9 7.5E-24 1.6E-28 253.6 12.5 436 113-615 138-594 (968)
6 KOG4194 Membrane glycoprotein 99.7 4.3E-18 9.4E-23 175.2 0.4 321 175-582 79-401 (873)
7 KOG4194 Membrane glycoprotein 99.7 2.9E-17 6.2E-22 169.2 3.7 230 276-555 217-448 (873)
8 cd00116 LRR_RI Leucine-rich re 99.6 1.2E-13 2.7E-18 143.9 20.0 266 135-434 13-296 (319)
9 cd00116 LRR_RI Leucine-rich re 99.6 1.1E-13 2.3E-18 144.5 19.4 282 105-424 13-315 (319)
10 KOG0444 Cytoskeletal regulator 99.6 2.7E-16 5.9E-21 163.0 -0.8 374 144-661 6-385 (1255)
11 KOG2120 SCF ubiquitin ligase, 99.5 5E-14 1.1E-18 134.5 6.0 205 174-419 185-390 (419)
12 KOG0444 Cytoskeletal regulator 99.4 3.1E-15 6.8E-20 155.3 -4.3 352 115-570 7-359 (1255)
13 KOG1947 Leucine rich repeat pr 99.4 2.9E-13 6.3E-18 149.7 9.8 36 6-42 45-81 (482)
14 PLN03210 Resistant to P. syrin 99.4 2.1E-12 4.4E-17 155.8 17.6 61 278-347 655-715 (1153)
15 KOG1947 Leucine rich repeat pr 99.4 6.5E-13 1.4E-17 147.0 9.3 148 138-318 181-331 (482)
16 PLN03210 Resistant to P. syrin 99.4 1.5E-12 3.2E-17 157.1 11.3 250 112-424 555-810 (1153)
17 KOG1909 Ran GTPase-activating 99.3 1.6E-11 3.5E-16 120.5 13.2 270 106-413 21-322 (382)
18 KOG0618 Serine/threonine phosp 99.2 2.5E-12 5.4E-17 140.3 2.2 162 483-667 356-525 (1081)
19 KOG1909 Ran GTPase-activating 99.2 2.3E-10 5E-15 112.5 12.5 278 134-440 19-324 (382)
20 KOG0618 Serine/threonine phosp 98.9 1.2E-10 2.5E-15 127.5 -0.4 40 539-582 376-416 (1081)
21 KOG0472 Leucine-rich repeat pr 98.9 3E-12 6.4E-17 127.2 -14.1 245 112-428 65-309 (565)
22 KOG3207 Beta-tubulin folding c 98.8 1.9E-09 4.2E-14 108.9 4.4 162 232-424 118-279 (505)
23 KOG3207 Beta-tubulin folding c 98.8 2.5E-09 5.5E-14 108.0 1.6 210 142-397 118-334 (505)
24 PF12937 F-box-like: F-box-lik 98.7 3.8E-09 8.3E-14 75.2 1.0 36 6-42 1-37 (47)
25 KOG0472 Leucine-rich repeat pr 98.6 1.1E-10 2.4E-15 116.2 -12.6 229 137-429 60-288 (565)
26 PRK15387 E3 ubiquitin-protein 98.6 5.1E-08 1.1E-12 110.1 5.6 23 539-561 438-460 (788)
27 PRK15387 E3 ubiquitin-protein 98.5 1.1E-07 2.5E-12 107.3 6.0 253 116-526 202-455 (788)
28 PRK15370 E3 ubiquitin-protein 98.2 3.9E-06 8.5E-11 95.5 8.2 83 336-429 346-428 (754)
29 KOG3665 ZYG-1-like serine/thre 98.1 3.8E-06 8.1E-11 94.7 7.1 159 203-398 122-284 (699)
30 PF14580 LRR_9: Leucine-rich r 98.1 5.8E-07 1.3E-11 83.2 0.5 131 278-424 17-148 (175)
31 PF00646 F-box: F-box domain; 98.1 2.1E-07 4.6E-12 66.6 -1.9 38 5-43 2-40 (48)
32 smart00256 FBOX A Receptor for 98.0 1.7E-06 3.6E-11 59.5 1.4 34 9-43 1-35 (41)
33 PF14580 LRR_9: Leucine-rich r 98.0 2.6E-06 5.6E-11 78.9 1.9 37 278-315 111-147 (175)
34 KOG3665 ZYG-1-like serine/thre 97.9 1.3E-05 2.9E-10 90.3 7.0 162 174-372 122-285 (699)
35 COG5238 RNA1 Ran GTPase-activa 97.9 0.00015 3.3E-09 69.5 12.6 38 144-182 29-66 (388)
36 COG5238 RNA1 Ran GTPase-activa 97.9 0.00023 4.9E-09 68.4 13.3 104 160-290 17-130 (388)
37 KOG3864 Uncharacterized conser 97.9 1E-05 2.2E-10 74.3 3.6 76 326-403 115-190 (221)
38 KOG4658 Apoptotic ATPase [Sign 97.8 3.2E-05 7E-10 89.6 6.3 109 112-243 542-650 (889)
39 PRK15370 E3 ubiquitin-protein 97.7 6E-05 1.3E-09 86.0 7.9 118 280-428 178-295 (754)
40 KOG4237 Extracellular matrix p 97.7 5.3E-06 1.1E-10 83.4 -1.2 69 483-563 271-339 (498)
41 KOG0617 Ras suppressor protein 97.7 1.7E-05 3.7E-10 70.6 1.9 121 485-630 55-185 (264)
42 KOG1259 Nischarin, modulator o 97.5 5.8E-05 1.2E-09 73.3 3.3 44 508-560 369-413 (490)
43 KOG2982 Uncharacterized conser 97.5 8.9E-05 1.9E-09 72.1 4.4 200 134-373 60-260 (418)
44 KOG1859 Leucine-rich repeat pr 97.5 0.00013 2.8E-09 79.1 5.8 61 484-560 207-268 (1096)
45 KOG2123 Uncharacterized conser 97.4 4.9E-05 1.1E-09 73.1 1.1 91 542-660 37-146 (388)
46 KOG4237 Extracellular matrix p 97.4 2.6E-05 5.6E-10 78.6 -1.1 107 281-399 68-174 (498)
47 KOG1859 Leucine-rich repeat pr 97.4 1.6E-05 3.5E-10 85.7 -2.8 207 104-373 73-290 (1096)
48 KOG0617 Ras suppressor protein 97.4 6.7E-05 1.5E-09 66.9 1.3 126 485-650 32-159 (264)
49 KOG2982 Uncharacterized conser 97.3 0.0002 4.4E-09 69.6 4.1 140 272-424 63-207 (418)
50 KOG4658 Apoptotic ATPase [Sign 97.2 0.00027 5.8E-09 82.2 4.1 110 111-243 567-676 (889)
51 PF13855 LRR_8: Leucine rich r 97.0 0.0005 1.1E-08 51.8 3.0 60 486-557 1-60 (61)
52 KOG1259 Nischarin, modulator o 97.0 0.00038 8.1E-09 67.8 2.5 127 279-426 283-409 (490)
53 PLN03150 hypothetical protein; 96.8 0.0014 3E-08 74.3 5.8 84 310-402 420-503 (623)
54 KOG3864 Uncharacterized conser 96.8 0.0015 3.2E-08 60.5 4.5 25 221-245 137-161 (221)
55 PLN03150 hypothetical protein; 96.7 0.00063 1.4E-08 77.1 1.7 65 485-561 441-505 (623)
56 PF13855 LRR_8: Leucine rich r 96.5 0.00082 1.8E-08 50.6 0.3 59 280-346 1-59 (61)
57 smart00367 LRR_CC Leucine-rich 96.4 0.0034 7.4E-08 37.9 2.5 24 361-384 1-24 (26)
58 KOG4308 LRR-containing protein 96.0 0.0026 5.6E-08 69.0 1.2 204 175-436 88-310 (478)
59 smart00367 LRR_CC Leucine-rich 95.9 0.0095 2.1E-07 36.0 2.8 25 335-359 1-25 (26)
60 KOG2997 F-box protein FBX9 [Ge 95.7 0.0033 7.2E-08 61.8 0.7 40 5-44 106-150 (366)
61 COG4886 Leucine-rich repeat (L 95.5 0.0076 1.6E-07 64.8 2.4 173 175-402 117-290 (394)
62 KOG2739 Leucine-rich acidic nu 95.5 0.0046 1E-07 59.7 0.6 108 307-423 42-150 (260)
63 PLN03215 ascorbic acid mannose 95.4 0.0072 1.6E-07 62.6 1.8 38 4-41 2-40 (373)
64 PRK15386 type III secretion pr 95.4 0.013 2.9E-07 61.3 3.7 35 281-321 73-107 (426)
65 KOG4308 LRR-containing protein 94.9 0.0046 1E-07 67.1 -1.4 86 147-245 89-182 (478)
66 COG4886 Leucine-rich repeat (L 94.8 0.02 4.3E-07 61.5 3.2 176 142-373 113-288 (394)
67 KOG0281 Beta-TrCP (transducin 94.7 0.011 2.5E-07 58.4 0.8 39 3-42 72-115 (499)
68 PRK15386 type III secretion pr 94.5 0.064 1.4E-06 56.4 5.8 12 114-125 51-62 (426)
69 KOG2123 Uncharacterized conser 94.3 0.011 2.4E-07 57.4 -0.4 89 139-242 35-124 (388)
70 PF12799 LRR_4: Leucine Rich r 94.3 0.059 1.3E-06 37.3 3.4 34 146-185 2-35 (44)
71 PF12799 LRR_4: Leucine Rich r 93.5 0.1 2.2E-06 36.1 3.5 37 115-158 1-37 (44)
72 PF13516 LRR_6: Leucine Rich r 92.9 0.077 1.7E-06 31.2 1.8 22 362-384 2-23 (24)
73 KOG2739 Leucine-rich acidic nu 92.8 0.071 1.5E-06 51.7 2.5 89 143-246 63-154 (260)
74 KOG0532 Leucine-rich repeat (L 91.1 0.064 1.4E-06 57.4 0.0 117 485-629 120-245 (722)
75 PF13013 F-box-like_2: F-box-l 90.4 0.15 3.3E-06 42.8 1.7 31 4-35 20-50 (109)
76 PF13516 LRR_6: Leucine Rich r 90.3 0.2 4.4E-06 29.3 1.7 24 335-359 1-24 (24)
77 KOG1644 U2-associated snRNP A' 89.2 0.23 4.9E-06 46.4 1.9 91 330-424 58-148 (233)
78 KOG1644 U2-associated snRNP A' 88.8 0.2 4.4E-06 46.7 1.3 38 335-373 87-124 (233)
79 KOG3763 mRNA export factor TAP 88.4 0.69 1.5E-05 49.7 5.0 96 107-209 210-307 (585)
80 smart00368 LRR_RI Leucine rich 84.3 1.7 3.6E-05 26.6 3.3 23 362-385 2-24 (28)
81 KOG0531 Protein phosphatase 1, 81.6 0.42 9.2E-06 51.6 -0.2 106 277-400 92-197 (414)
82 KOG0274 Cdc4 and related F-box 78.3 0.61 1.3E-05 51.7 -0.4 41 3-44 105-146 (537)
83 KOG0531 Protein phosphatase 1, 78.0 1.5 3.3E-05 47.3 2.6 32 485-521 117-148 (414)
84 smart00368 LRR_RI Leucine rich 78.0 3.2 7E-05 25.4 3.0 25 336-361 2-26 (28)
85 KOG4579 Leucine-rich repeat (L 71.4 1.5 3.2E-05 38.5 0.4 37 334-373 75-111 (177)
86 PF13504 LRR_7: Leucine rich r 67.5 4.6 0.0001 21.4 1.6 11 363-373 2-12 (17)
87 KOG3926 F-box proteins [Amino 66.8 4.5 9.7E-05 39.4 2.5 32 3-34 199-230 (332)
88 KOG4579 Leucine-rich repeat (L 63.4 3 6.6E-05 36.7 0.7 30 175-210 78-107 (177)
89 PF13306 LRR_5: Leucine rich r 54.1 8 0.00017 33.5 1.8 55 485-553 34-88 (129)
90 PF00560 LRR_1: Leucine Rich R 53.8 6.3 0.00014 22.4 0.7 12 548-559 2-13 (22)
91 KOG3763 mRNA export factor TAP 52.6 17 0.00038 39.5 4.2 68 334-404 216-285 (585)
92 PF13306 LRR_5: Leucine rich r 40.4 59 0.0013 27.8 5.2 13 509-521 77-89 (129)
93 KOG0532 Leucine-rich repeat (L 33.3 8.4 0.00018 42.0 -1.7 31 539-573 114-144 (722)
94 KOG0473 Leucine-rich repeat pr 31.5 19 0.00041 34.8 0.5 102 540-673 36-138 (326)
95 PF07723 LRR_2: Leucine Rich R 30.5 42 0.00092 20.1 1.7 25 338-362 2-26 (26)
96 PF08356 EF_assoc_2: EF hand a 25.8 80 0.0017 25.6 3.1 45 619-663 36-83 (89)
97 KOG2502 Tub family proteins [G 20.1 61 0.0013 33.2 1.7 40 5-44 44-91 (355)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.97 E-value=5.3e-32 Score=267.44 Aligned_cols=368 Identities=19% Similarity=0.278 Sum_probs=293.5
Q ss_pred CCCcHHHHHHHHhcCCCCCccchhhhhhh-hhcccccccCCCCCCcccccCCCCCCCCCCCCCCccchhhhcccCCCCCC
Q 038791 7 NNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSSPTRP 85 (683)
Q Consensus 7 ~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~~~~~r~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (683)
-.||+|++..||+|| +++.++++|+||+ |+..+.+.. -|+..+..++- .+-..+.+.....+|.+
T Consensus 73 ~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~-----------~~q~idL~t~~--rDv~g~VV~~~~~Rcgg 138 (483)
T KOG4341|consen 73 RSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLALDGS-----------CWQHIDLFTFQ--RDVDGGVVENMISRCGG 138 (483)
T ss_pred ccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccc-----------cceeeehhcch--hcCCCcceehHhhhhcc
Confidence 369999999999999 9999999999999 999996433 12211111110 01112333333333444
Q ss_pred CCCCChhhhhhcccC-ccCHHHHHHHhccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhH
Q 038791 86 PLTSGLPVNHVSHHL-LSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPP 164 (683)
Q Consensus 86 ~~~~~l~~~~~l~~~-~~~~~~L~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~ 164 (683)
|. -...++++ .+.+..+..+...||++++|.+.+|... .+..+..+...|++|++|++..|..+++..
T Consensus 139 ~l-----k~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i----Td~s~~sla~~C~~l~~l~L~~c~~iT~~~-- 207 (483)
T KOG4341|consen 139 FL-----KELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI----TDSSLLSLARYCRKLRHLNLHSCSSITDVS-- 207 (483)
T ss_pred cc-----ccccccccccCCcchhhHHhhhCCchhhhhhhcceec----cHHHHHHHHHhcchhhhhhhcccchhHHHH--
Confidence 44 23344444 6778889999999999999999988855 467778888999999999999987776644
Q ss_pred HHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEe-ceecCCCCccccCHHHHHHHHhcCCCCcEEeec
Q 038791 165 VLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLV-ACTFDPRYIGFVNDETLSAIATNCPKLTLLHLV 243 (683)
Q Consensus 165 ~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~ 243 (683)
++.+...|++|++|+++ +|..+++.++..+...|..++.+.+ +|. ..+++.+..+...|+-+.++++.
T Consensus 208 -Lk~la~gC~kL~~lNlS---wc~qi~~~gv~~~~rG~~~l~~~~~kGC~-------e~~le~l~~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 208 -LKYLAEGCRKLKYLNLS---WCPQISGNGVQALQRGCKELEKLSLKGCL-------ELELEALLKAAAYCLEILKLNLQ 276 (483)
T ss_pred -HHHHHHhhhhHHHhhhc---cCchhhcCcchHHhccchhhhhhhhcccc-------cccHHHHHHHhccChHhhccchh
Confidence 55566778899999999 8888999999999999999998887 664 78888998888899999999988
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccc
Q 038791 244 DTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCL 323 (683)
Q Consensus 244 ~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~ 323 (683)
+| +.+||.++..+...|..|+.|+.+.|.++++.. +.++++++++|+.|.+.+|..+++
T Consensus 277 ~c-------------------~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~--l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 277 HC-------------------NQLTDEDLWLIACGCHALQVLCYSSCTDITDEV--LWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred hh-------------------ccccchHHHHHhhhhhHhhhhcccCCCCCchHH--HHHHhcCCCceEEEeccccchhhh
Confidence 88 568888998888899999999999999988876 889999999999999999987654
Q ss_pred cccccccccc-cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHh-c-ccCccEEEeeccc
Q 038791 324 AIGWQLDGVS-LCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAAL-R-RETLVEMKISCCK 400 (683)
Q Consensus 324 ~~~~~~~~l~-~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~-~-~~~L~~L~l~~c~ 400 (683)
.++..++ +|+.|+.+++..|..++|..+..++.+|+.|++|.++.|..+|+.|+..+... | ...|+.+.+++|+
T Consensus 336 ---~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 336 ---RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred ---hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 5777787 89999999999999899999999999999999999999999999999888653 1 1789999999999
Q ss_pred ccChhhHHHHHHhcCCCccEEEEe-eecCChhhHHHH
Q 038791 401 QLGAVASCKALDLVRDRIEKLHID-CVWDGLELTESS 436 (683)
Q Consensus 401 ~l~~~~~l~~l~~~~~~L~~L~L~-c~~~~~~~~~~~ 436 (683)
.++ +..+..+ ..|++|+.+++- |..++.++++..
T Consensus 413 ~i~-d~~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 413 LIT-DATLEHL-SICRNLERIELIDCQDVTKEAISRF 447 (483)
T ss_pred Cch-HHHHHHH-hhCcccceeeeechhhhhhhhhHHH
Confidence 984 4445554 478999999886 666555555544
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.92 E-value=2.8e-26 Score=227.02 Aligned_cols=330 Identities=23% Similarity=0.337 Sum_probs=269.8
Q ss_pred cccHHHHhhcCC-CCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEe-c
Q 038791 134 GAEFIPLFEHCE-CLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLV-A 211 (683)
Q Consensus 134 ~~~l~~~~~~~~-~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~ 211 (683)
++.+..++..|. .|++|.+.++.-... ..+..+...||++++|.+. +|.++++..+..+...|++|++|++ +
T Consensus 126 g~VV~~~~~Rcgg~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~---gc~~iTd~s~~sla~~C~~l~~l~L~~ 199 (483)
T KOG4341|consen 126 GGVVENMISRCGGFLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALY---GCKKITDSSLLSLARYCRKLRHLNLHS 199 (483)
T ss_pred CcceehHhhhhccccccccccccccCCc---chhhHHhhhCCchhhhhhh---cceeccHHHHHHHHHhcchhhhhhhcc
Confidence 455666777776 799999999965433 2366677788999999999 7889999999999999999999999 7
Q ss_pred eecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEecccc
Q 038791 212 CTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCK 291 (683)
Q Consensus 212 c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~ 291 (683)
|. .+++..++.++..|++|++|+++.|+ .+++.++..+..+|..++.+.+.+|.
T Consensus 200 c~-------~iT~~~Lk~la~gC~kL~~lNlSwc~-------------------qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 200 CS-------SITDVSLKYLAEGCRKLKYLNLSWCP-------------------QISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred cc-------hhHHHHHHHHHHhhhhHHHhhhccCc-------------------hhhcCcchHHhccchhhhhhhhcccc
Confidence 66 89999999999999999999999985 46667888889999999999999998
Q ss_pred CcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccc-cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEec
Q 038791 292 NVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVS-LCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELE 370 (683)
Q Consensus 292 ~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~-~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~ 370 (683)
...++. +..+...++-+..+++..|..+++ .....+. .|..|+.|+.++|.+++|..+.+++++|++|+.|.++
T Consensus 254 e~~le~--l~~~~~~~~~i~~lnl~~c~~lTD---~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~ 328 (483)
T KOG4341|consen 254 ELELEA--LLKAAAYCLEILKLNLQHCNQLTD---EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS 328 (483)
T ss_pred cccHHH--HHHHhccChHhhccchhhhccccc---hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc
Confidence 887665 777778888899999999977765 3333444 7899999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEe-eecCChhhHHHHhhhccccCcccCC
Q 038791 371 GCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHID-CVWDGLELTESSESKVRSFDLNELN 449 (683)
Q Consensus 371 ~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~-c~~~~~~~~~~~~~~~~~l~l~~~~ 449 (683)
+|.++++.++..+++.| +.|+.+++..|..+.+. .+..++.+|+.|+.|.++ |--+++++...+..+.
T Consensus 329 ~c~~fsd~~ft~l~rn~-~~Le~l~~e~~~~~~d~-tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~--------- 397 (483)
T KOG4341|consen 329 GCQQFSDRGFTMLGRNC-PHLERLDLEECGLITDG-TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS--------- 397 (483)
T ss_pred ccchhhhhhhhhhhcCC-hhhhhhcccccceehhh-hHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc---------
Confidence 99999999999999999 99999999999988544 588889999999999999 6666666544432111
Q ss_pred cHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCC
Q 038791 450 DEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGR 529 (683)
Q Consensus 450 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~ 529 (683)
...+.|+.+.|. .+..+++.....+..|++|+.+++. +|.++
T Consensus 398 ---------------------------------c~~~~l~~lEL~--n~p~i~d~~Le~l~~c~~Leri~l~---~~q~v 439 (483)
T KOG4341|consen 398 ---------------------------------CSLEGLEVLELD--NCPLITDATLEHLSICRNLERIELI---DCQDV 439 (483)
T ss_pred ---------------------------------ccccccceeeec--CCCCchHHHHHHHhhCcccceeeee---chhhh
Confidence 124567777753 5777877788889999999999999 99877
Q ss_pred CCCCCccchhhhhccCcccccccc
Q 038791 530 QKPSDRAFGLSCLTRYPQLTKLRL 553 (683)
Q Consensus 530 ~~~~~~~~~~~~l~~l~~L~~L~l 553 (683)
++.....| -.++|+++...+
T Consensus 440 tk~~i~~~----~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 440 TKEAISRF----ATHLPNIKVHAY 459 (483)
T ss_pred hhhhhHHH----HhhCccceehhh
Confidence 65443322 356788777654
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.4e-25 Score=207.12 Aligned_cols=294 Identities=17% Similarity=0.187 Sum_probs=204.1
Q ss_pred CcCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhcccccccCCCCCCcccccCCCCCCCCCCCCCCccchhhhcccCCC
Q 038791 4 TTINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSSP 82 (683)
Q Consensus 4 ~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~~~~~r~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (683)
..|+.|||||+..||+.| ..+++.+++.||| |++++.+.+ .|...+.++-++.+.--..++....
T Consensus 96 v~~~slpDEill~IFs~L-~kk~LL~~~~VC~Rfyr~~~de~-----------lW~~lDl~~r~i~p~~l~~l~~rgV-- 161 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCL-CKKELLKVSGVCKRFYRLASDES-----------LWQTLDLTGRNIHPDVLGRLLSRGV-- 161 (419)
T ss_pred CCcccCCHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcccccc-----------ceeeeccCCCccChhHHHHHHhCCe--
Confidence 347899999999999999 9999999999999 999997666 5666655554444321111111100
Q ss_pred CCCCCCCChhhhhhcccCccCHHHHHHHh-ccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCC
Q 038791 83 TRPPLTSGLPVNHVSHHLLSDTVTLEILL-PQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTED 161 (683)
Q Consensus 83 ~~~~~~~~l~~~~~l~~~~~~~~~L~~l~-~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~ 161 (683)
++.++...-+....+.... ..-..|++|+|++... ....+..+++.|.+|+.|.|.+... ++.
T Consensus 162 ----------~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~i-----t~stl~~iLs~C~kLk~lSlEg~~L-dD~ 225 (419)
T KOG2120|consen 162 ----------IVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVI-----TVSTLHGILSQCSKLKNLSLEGLRL-DDP 225 (419)
T ss_pred ----------EEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhe-----eHHHHHHHHHHHHhhhhcccccccc-CcH
Confidence 0001111112222222222 2224699999985443 2455777889999999999999987 566
Q ss_pred hhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEe
Q 038791 162 LPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLH 241 (683)
Q Consensus 162 ~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~ 241 (683)
+...++.-. +|+.|+|+ .|.|++..++..+..+|..|..|+|+ |+...++..-..++.--++|+.|+
T Consensus 226 I~~~iAkN~----~L~~lnls---m~sG~t~n~~~ll~~scs~L~~LNls------Wc~l~~~~Vtv~V~hise~l~~LN 292 (419)
T KOG2120|consen 226 IVNTIAKNS----NLVRLNLS---MCSGFTENALQLLLSSCSRLDELNLS------WCFLFTEKVTVAVAHISETLTQLN 292 (419)
T ss_pred HHHHHhccc----cceeeccc---cccccchhHHHHHHHhhhhHhhcCch------HhhccchhhhHHHhhhchhhhhhh
Confidence 666676666 99999999 88999999999999999999999994 223445543334444557899999
Q ss_pred ecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccc
Q 038791 242 LVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGV 321 (683)
Q Consensus 242 L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l 321 (683)
++||.. .+.+..+..+...||+|.+|||++|..+++.. + ..+-+++.|++|.++.|.++
T Consensus 293 lsG~rr------------------nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~--~-~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 293 LSGYRR------------------NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC--F-QEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhHh------------------hhhhhHHHHHHHhCCceeeeccccccccCchH--H-HHHHhcchheeeehhhhcCC
Confidence 998853 34455677788889999999999988887743 3 33345888888888888765
Q ss_pred cccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcE
Q 038791 322 CLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIK 366 (683)
Q Consensus 322 ~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~ 366 (683)
-. ..+-.+...|.|.+|++.+| ++|..+.-+...||+|+.
T Consensus 352 ~p---~~~~~l~s~psl~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 352 IP---ETLLELNSKPSLVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred Ch---HHeeeeccCcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence 22 33344557778888888776 567666666666666654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=8.5e-24 Score=253.15 Aligned_cols=435 Identities=17% Similarity=0.086 Sum_probs=229.8
Q ss_pred hccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCC
Q 038791 111 LPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGF 190 (683)
Q Consensus 111 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i 190 (683)
...+++|++|+++++... +.++ ...+++|++|+|++|.+ ...+|..+..++ +|++|+|++|.....
T Consensus 114 ~~~l~~L~~L~Ls~n~l~------~~~p--~~~l~~L~~L~Ls~n~~-~~~~p~~~~~l~----~L~~L~L~~n~l~~~- 179 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFT------GSIP--RGSIPNLETLDLSNNML-SGEIPNDIGSFS----SLKVLDLGGNVLVGK- 179 (968)
T ss_pred hccCCCCCEEECcCCccc------cccC--ccccCCCCEEECcCCcc-cccCChHHhcCC----CCCEEECccCccccc-
Confidence 346788888888865532 1111 13467788888888765 345555565555 888888886542111
Q ss_pred CHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHH
Q 038791 191 KAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSRE 270 (683)
Q Consensus 191 ~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~ 270 (683)
++..+..+++|++|+++. +.++......+ .++++|++|+++++. ++.
T Consensus 180 ----~p~~~~~l~~L~~L~L~~-------n~l~~~~p~~l-~~l~~L~~L~L~~n~--------------------l~~- 226 (968)
T PLN00113 180 ----IPNSLTNLTSLEFLTLAS-------NQLVGQIPREL-GQMKSLKWIYLGYNN--------------------LSG- 226 (968)
T ss_pred ----CChhhhhCcCCCeeeccC-------CCCcCcCChHH-cCcCCccEEECcCCc--------------------cCC-
Confidence 222345677888888831 13333323333 367788888877542 111
Q ss_pred HHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCC
Q 038791 271 GLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLS 350 (683)
Q Consensus 271 ~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt 350 (683)
.++..+..+++|++|++++| .++.. ++....++++|+.|+++++. ..+..+..+..+++|++|++++|. ++
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n-~l~~~---~p~~l~~l~~L~~L~L~~n~----l~~~~p~~l~~l~~L~~L~Ls~n~-l~ 297 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYN-NLTGP---IPSSLGNLKNLQYLFLYQNK----LSGPIPPSIFSLQKLISLDLSDNS-LS 297 (968)
T ss_pred cCChhHhcCCCCCEEECcCc-eeccc---cChhHhCCCCCCEEECcCCe----eeccCchhHhhccCcCEEECcCCe-ec
Confidence 12223455677777777764 34332 33344567777777776632 223344555666777777777664 44
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCCh
Q 038791 351 DMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGL 430 (683)
Q Consensus 351 ~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~ 430 (683)
......+. .+++|+.|++++|. +++.....+.. + ++|+.|++++|...+. ++......++|+.|+++.+.++.
T Consensus 298 ~~~p~~~~-~l~~L~~L~l~~n~-~~~~~~~~~~~-l-~~L~~L~L~~n~l~~~---~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 298 GEIPELVI-QLQNLEILHLFSNN-FTGKIPVALTS-L-PRLQVLQLWSNKFSGE---IPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred cCCChhHc-CCCCCcEEECCCCc-cCCcCChhHhc-C-CCCCEEECcCCCCcCc---CChHHhCCCCCcEEECCCCeeEe
Confidence 43333333 36777777777766 44443333333 3 6777777776654322 22233345667777776544433
Q ss_pred hhHHHHh--hhccccCcccC---CcH-HHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCc
Q 038791 431 ELTESSE--SKVRSFDLNEL---NDE-DDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPL 504 (683)
Q Consensus 431 ~~~~~~~--~~~~~l~l~~~---~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~ 504 (683)
.....++ ..+..+++... +.. ..+..+++|+.+.+..+. +++..+... ..+++|+.|+++ ++.+++.
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~---l~~~~p~~~-~~l~~L~~L~Ls---~N~l~~~ 443 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS---FSGELPSEF-TKLPLVYFLDIS---NNNLQGR 443 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE---eeeECChhH-hcCCCCCEEECc---CCcccCc
Confidence 2222222 12233333222 222 234556667666653322 222222111 125566666653 3555554
Q ss_pred cccCCCCCCCcceeeecccCCCCCCCC-CCCc-------------cc---hhhhhccCcccccccccccccceeecccCC
Q 038791 505 PIVGLDDCPVLEEIRIKMEGDSRGRQK-PSDR-------------AF---GLSCLTRYPQLTKLRLEFGETIGYALTAPG 567 (683)
Q Consensus 505 ~~~~L~~~~~L~~L~l~~~~~c~~~~~-~~~~-------------~~---~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~ 567 (683)
....+..+++|+.|+++ +|+.... |... .+ .+..+..+++|+.|+++.|.+.|.. |.
T Consensus 444 ~~~~~~~l~~L~~L~L~---~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~ 517 (968)
T PLN00113 444 INSRKWDMPSLQMLSLA---RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI---PD 517 (968)
T ss_pred cChhhccCCCCcEEECc---CceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC---Ch
Confidence 44445556666666666 5532110 0000 11 1344566667777777777666633 55
Q ss_pred CCCCchhhHHHhhcc----------ccee-eeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccch
Q 038791 568 GETDLTLWDRFFFNG----------IGNL-RLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTA 629 (683)
Q Consensus 568 ~~~~l~~l~~~~l~~----------~~~l-~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~ 629 (683)
.+.+++.|+.+++++ ++.+ +|..| ++..|++++.+|.. ++++++|+.|++++|.
T Consensus 518 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L------~Ls~N~l~~~~p~~--l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL------DLSQNQLSGEIPKN--LGNVESLVQVNISHNH 582 (968)
T ss_pred HHcCccCCCEEECCCCcccccCChhHhCcccCCEE------ECCCCcccccCChh--HhcCcccCEEeccCCc
Confidence 555566665555543 2222 33333 34556777777765 6666677777777664
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=7.5e-24 Score=253.60 Aligned_cols=436 Identities=15% Similarity=0.111 Sum_probs=218.9
Q ss_pred cCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCH
Q 038791 113 QWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKA 192 (683)
Q Consensus 113 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~ 192 (683)
.+++|++|+|+++. ..+.++..+..+++|++|++++|.+ .+.+|..+..++ +|++|+|++|.....
T Consensus 138 ~l~~L~~L~Ls~n~------~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~~~l~----~L~~L~L~~n~l~~~--- 203 (968)
T PLN00113 138 SIPNLETLDLSNNM------LSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNSLTNLT----SLEFLTLASNQLVGQ--- 203 (968)
T ss_pred ccCCCCEEECcCCc------ccccCChHHhcCCCCCEEECccCcc-cccCChhhhhCc----CCCeeeccCCCCcCc---
Confidence 46788888888654 2334555677788888888888765 345566566555 888888886542111
Q ss_pred HHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCC-C---CccCCCCcC
Q 038791 193 QEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSD-G---FTAEDASVS 268 (683)
Q Consensus 193 ~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~-g---~~~~~~~lt 268 (683)
++..+..+++|+.|+++ .+.++......+ ..+++|++|++++|......+...... . +....+.++
T Consensus 204 --~p~~l~~l~~L~~L~L~-------~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 204 --IPRELGQMKSLKWIYLG-------YNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred --CChHHcCcCCccEEECc-------CCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 22334567788888873 123333333333 367777777777653111000000000 0 000001111
Q ss_pred HHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCC
Q 038791 269 REGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGD 348 (683)
Q Consensus 269 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~ 348 (683)
+ .++..+..+++|++|++++| .++.. ++....++++|+.|++.++.. .+..+..+..+++|+.|++++|.
T Consensus 274 ~-~~p~~l~~l~~L~~L~Ls~n-~l~~~---~p~~~~~l~~L~~L~l~~n~~----~~~~~~~~~~l~~L~~L~L~~n~- 343 (968)
T PLN00113 274 G-PIPPSIFSLQKLISLDLSDN-SLSGE---IPELVIQLQNLEILHLFSNNF----TGKIPVALTSLPRLQVLQLWSNK- 343 (968)
T ss_pred c-cCchhHhhccCcCEEECcCC-eeccC---CChhHcCCCCCcEEECCCCcc----CCcCChhHhcCCCCCEEECcCCC-
Confidence 1 11112233445555555443 22221 222233445555555544221 12233334445555555555543
Q ss_pred CCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecC
Q 038791 349 LSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWD 428 (683)
Q Consensus 349 lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~ 428 (683)
+++.....+.. +++|+.|++++|. +++.....+... ++|+.|++++|...+. ++.....+++|+.|+++.+.+
T Consensus 344 l~~~~p~~l~~-~~~L~~L~Ls~n~-l~~~~p~~~~~~--~~L~~L~l~~n~l~~~---~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 344 FSGEIPKNLGK-HNNLTVLDLSTNN-LTGEIPEGLCSS--GNLFKLILFSNSLEGE---IPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred CcCcCChHHhC-CCCCcEEECCCCe-eEeeCChhHhCc--CCCCEEECcCCEeccc---CCHHHhCCCCCCEEECcCCEe
Confidence 33333333333 4555555555554 333222222222 4555555554443221 122233566777777765444
Q ss_pred ChhhHHHHh--hhccccCcccC---CcH-HHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCC
Q 038791 429 GLELTESSE--SKVRSFDLNEL---NDE-DDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLT 502 (683)
Q Consensus 429 ~~~~~~~~~--~~~~~l~l~~~---~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~ 502 (683)
+......+. ..+..+++... +.. .....+++|+.+.+..+. +.+..+...+ .++|+.|+++ ++.++
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~---~~~~~p~~~~--~~~L~~L~ls---~n~l~ 488 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK---FFGGLPDSFG--SKRLENLDLS---RNQFS 488 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce---eeeecCcccc--cccceEEECc---CCccC
Confidence 322221111 12333333322 222 123345666666653322 1222222222 4677778763 36666
Q ss_pred CccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhcc
Q 038791 503 PLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNG 582 (683)
Q Consensus 503 ~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~ 582 (683)
+..+..+.++++|++|+++ +|... ...|..+..+++|+.|+|+.|.++|. .|..+.+++.|+.+++++
T Consensus 489 ~~~~~~~~~l~~L~~L~Ls---~N~l~------~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~ 556 (968)
T PLN00113 489 GAVPRKLGSLSELMQLKLS---ENKLS------GEIPDELSSCKKLVSLDLSHNQLSGQ---IPASFSEMPVLSQLDLSQ 556 (968)
T ss_pred CccChhhhhhhccCEEECc---CCcce------eeCChHHcCccCCCEEECCCCccccc---CChhHhCcccCCEEECCC
Confidence 6655567778888888888 77311 11255677788888888888887774 366666777777776654
Q ss_pred ----------ccee-eeccccCCCCCCcCccCcccCcccchHHH
Q 038791 583 ----------IGNL-RLNELDYWPAQDRDVNQRSLTLPASGLIA 615 (683)
Q Consensus 583 ----------~~~l-~l~~l~~~~~~~~~~n~~~~~~p~~~~l~ 615 (683)
+..+ +|..+ +...|++++.+|..+.+.
T Consensus 557 N~l~~~~p~~l~~l~~L~~l------~ls~N~l~~~~p~~~~~~ 594 (968)
T PLN00113 557 NQLSGEIPKNLGNVESLVQV------NISHNHLHGSLPSTGAFL 594 (968)
T ss_pred CcccccCChhHhcCcccCEE------eccCCcceeeCCCcchhc
Confidence 2222 23333 456799999999865443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=4.3e-18 Score=175.22 Aligned_cols=321 Identities=16% Similarity=0.128 Sum_probs=183.3
Q ss_pred CccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCC
Q 038791 175 NLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGD 254 (683)
Q Consensus 175 ~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~ 254 (683)
.-+.|++++|. +.+..+.. +.++|+|+++++.. +.+ ..++.++....+|++|++.+.. +
T Consensus 79 ~t~~LdlsnNk----l~~id~~~-f~nl~nLq~v~l~~-------N~L--t~IP~f~~~sghl~~L~L~~N~-I------ 137 (873)
T KOG4194|consen 79 QTQTLDLSNNK----LSHIDFEF-FYNLPNLQEVNLNK-------NEL--TRIPRFGHESGHLEKLDLRHNL-I------ 137 (873)
T ss_pred ceeeeeccccc----cccCcHHH-HhcCCcceeeeecc-------chh--hhcccccccccceeEEeeeccc-c------
Confidence 45567777665 33322222 25667777777731 111 2233334344567777776421 0
Q ss_pred CCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCccccccccccccccccc
Q 038791 255 PDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSL 334 (683)
Q Consensus 255 ~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~ 334 (683)
..++.+.+ +.+|.|+.|||+. +.++... ... ...-.++++|+|++ +..+.-....+..
T Consensus 138 ----------~sv~se~L----~~l~alrslDLSr-N~is~i~--~~s-fp~~~ni~~L~La~----N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 138 ----------SSVTSEEL----SALPALRSLDLSR-NLISEIP--KPS-FPAKVNIKKLNLAS----NRITTLETGHFDS 195 (873)
T ss_pred ----------ccccHHHH----HhHhhhhhhhhhh-chhhccc--CCC-CCCCCCceEEeecc----ccccccccccccc
Confidence 12333333 3356677777776 4444311 111 12235677777775 3333344455666
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccc--cChhhHHHHHH
Q 038791 335 CGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQ--LGAVASCKALD 412 (683)
Q Consensus 335 ~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~--l~~~~~l~~l~ 412 (683)
+.+|..|.|+.+. ++-.....+.+ +|+|++|+|..+. |.......+- .+ ++|+.|.+..+.- ++++ ..
T Consensus 196 lnsL~tlkLsrNr-ittLp~r~Fk~-L~~L~~LdLnrN~-irive~ltFq-gL-~Sl~nlklqrN~I~kL~DG-----~F 265 (873)
T KOG4194|consen 196 LNSLLTLKLSRNR-ITTLPQRSFKR-LPKLESLDLNRNR-IRIVEGLTFQ-GL-PSLQNLKLQRNDISKLDDG-----AF 265 (873)
T ss_pred cchheeeecccCc-ccccCHHHhhh-cchhhhhhccccc-eeeehhhhhc-Cc-hhhhhhhhhhcCcccccCc-----ce
Confidence 6678888888754 66655555544 7888888887776 4333222222 23 7777777765532 2222 12
Q ss_pred hcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceee
Q 038791 413 LVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLS 492 (683)
Q Consensus 413 ~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 492 (683)
..|.++++|+|.-+.+. . -.++.+.++.+|+.|.+..|.-.-+..+.. ..+++|++|+
T Consensus 266 y~l~kme~l~L~~N~l~-----~-------------vn~g~lfgLt~L~~L~lS~NaI~rih~d~W----sftqkL~~Ld 323 (873)
T KOG4194|consen 266 YGLEKMEHLNLETNRLQ-----A-------------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSW----SFTQKLKELD 323 (873)
T ss_pred eeecccceeecccchhh-----h-------------hhcccccccchhhhhccchhhhheeecchh----hhcccceeEe
Confidence 24577888887722211 0 112345556666666664332111111111 3478899999
Q ss_pred eeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCc
Q 038791 493 IWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDL 572 (683)
Q Consensus 493 L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l 572 (683)
|++ |.++.+....+..+..|++|.++ +++- +.+.-..+..+.+|++|+|+.|++.+-+-.+...+.+|
T Consensus 324 Ls~---N~i~~l~~~sf~~L~~Le~LnLs---~Nsi------~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 324 LSS---NRITRLDEGSFRVLSQLEELNLS---HNSI------DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred ccc---cccccCChhHHHHHHHhhhhccc---ccch------HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 865 88888888888888889999998 7731 12224567778899999999998887765555566667
Q ss_pred hhhHHHhhcc
Q 038791 573 TLWDRFFFNG 582 (683)
Q Consensus 573 ~~l~~~~l~~ 582 (683)
++|.++.+.|
T Consensus 392 ~~LrkL~l~g 401 (873)
T KOG4194|consen 392 PSLRKLRLTG 401 (873)
T ss_pred hhhhheeecC
Confidence 7777776655
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=2.9e-17 Score=169.24 Aligned_cols=230 Identities=18% Similarity=0.202 Sum_probs=116.2
Q ss_pred HhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHH
Q 038791 276 FSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLV 355 (683)
Q Consensus 276 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~ 355 (683)
++++|+|+.|+|.. +.+.... ..-++.+++|+.|.+.. ++...-.-..+-.|.++++|+|..+. ++...-.
T Consensus 217 Fk~L~~L~~LdLnr-N~irive---~ltFqgL~Sl~nlklqr----N~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g 287 (873)
T KOG4194|consen 217 FKRLPKLESLDLNR-NRIRIVE---GLTFQGLPSLQNLKLQR----NDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEG 287 (873)
T ss_pred hhhcchhhhhhccc-cceeeeh---hhhhcCchhhhhhhhhh----cCcccccCcceeeecccceeecccch-hhhhhcc
Confidence 44566666666655 4443321 01124566666666654 21111111223355666666666643 3332222
Q ss_pred HHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccC-hhhHHHHHHhcCCCccEEEEeeecCChhhHH
Q 038791 356 AIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLG-AVASCKALDLVRDRIEKLHIDCVWDGLELTE 434 (683)
Q Consensus 356 ~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~-~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~ 434 (683)
.+. +++.|+.|+++++. |....+.... .| ++|++|+++++.... +...+..+ ..|++|+|+.+.+ .
T Consensus 288 ~lf-gLt~L~~L~lS~Na-I~rih~d~Ws-ft-qkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Nsi-----~ 354 (873)
T KOG4194|consen 288 WLF-GLTSLEQLDLSYNA-IQRIHIDSWS-FT-QKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHNSI-----D 354 (873)
T ss_pred ccc-ccchhhhhccchhh-hheeecchhh-hc-ccceeEeccccccccCChhHHHHH----HHhhhhcccccch-----H
Confidence 222 25666666666665 4433333332 23 667777776554321 11112111 3466666662222 1
Q ss_pred HHhhhccccCcccCCcHHHHhhhhhhccccccCCC-CccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCC
Q 038791 435 SSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGG-NWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCP 513 (683)
Q Consensus 435 ~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~ 513 (683)
.+.+ ......++|++|.+..|. +..+.|....|-| +++|+.|.+ .||++..++...+.+++
T Consensus 355 ~l~e-------------~af~~lssL~~LdLr~N~ls~~IEDaa~~f~g--l~~LrkL~l---~gNqlk~I~krAfsgl~ 416 (873)
T KOG4194|consen 355 HLAE-------------GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNG--LPSLRKLRL---TGNQLKSIPKRAFSGLE 416 (873)
T ss_pred HHHh-------------hHHHHhhhhhhhcCcCCeEEEEEecchhhhcc--chhhhheee---cCceeeecchhhhccCc
Confidence 1111 123345566666664332 2334454445555 778888886 46777777777778888
Q ss_pred CcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccc
Q 038791 514 VLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEF 555 (683)
Q Consensus 514 ~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 555 (683)
+|++|++. ++.-. ...+..+..+ .|++|.+..
T Consensus 417 ~LE~LdL~---~Naia------SIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 417 ALEHLDLG---DNAIA------SIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ccceecCC---CCcce------eecccccccc-hhhhhhhcc
Confidence 88888887 66211 2224455555 667666643
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=1.2e-13 Score=143.93 Aligned_cols=266 Identities=20% Similarity=0.181 Sum_probs=119.3
Q ss_pred ccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCC--HHH---HHHHHhhCCCCceEE
Q 038791 135 AEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFK--AQE---IREITAACPSLNKLL 209 (683)
Q Consensus 135 ~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~--~~~---l~~l~~~~~~L~~L~ 209 (683)
......+..+++|++|+++++.+.+.... .+...-...++|++|+++++. +. ... +...+..+++|++|+
T Consensus 13 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~~-~i~~~l~~~~~l~~l~l~~~~----~~~~~~~~~~~~~~l~~~~~L~~L~ 87 (319)
T cd00116 13 ERATELLPKLLCLQVLRLEGNTLGEEAAK-ALASALRPQPSLKELCLSLNE----TGRIPRGLQSLLQGLTKGCGLQELD 87 (319)
T ss_pred cchHHHHHHHhhccEEeecCCCCcHHHHH-HHHHHHhhCCCceEEeccccc----cCCcchHHHHHHHHHHhcCceeEEE
Confidence 33445555556677777777665322211 111111123367777776543 11 111 222334456677777
Q ss_pred e-ceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHH---HHhCC-CCCcE
Q 038791 210 V-ACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQ---LFSGL-PLLEE 284 (683)
Q Consensus 210 L-~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~---l~~~~-~~L~~ 284 (683)
+ +|.+ .......+..+... ++|++|++++| .+++.++.. .+..+ ++|++
T Consensus 88 l~~~~~-----~~~~~~~~~~l~~~-~~L~~L~ls~~--------------------~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 88 LSDNAL-----GPDGCGVLESLLRS-SSLQELKLNNN--------------------GLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ccCCCC-----ChhHHHHHHHHhcc-CcccEEEeeCC--------------------ccchHHHHHHHHHHHhCCCCceE
Confidence 6 2220 00112222333333 45677776654 233333222 22334 66666
Q ss_pred EEeccccCcCCChh-HHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH---hc
Q 038791 285 LVLDVCKNVRDSGP-VLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG---RG 360 (683)
Q Consensus 285 L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~---~~ 360 (683)
|++++| .++..+. .+......+++|++|++.+|.--..........+..+++|++|++++|. +++.+...+. ..
T Consensus 142 L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~ 219 (319)
T cd00116 142 LVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLAS 219 (319)
T ss_pred EEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcc
Confidence 666664 3443221 1222334455666666665422100000111222344566666666654 5555444332 23
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHhcc---cCccEEEeecccccC-hhhHHHHHHhcCCCccEEEEeeecCChhhHH
Q 038791 361 CRRLIKFELEGCKNVTVDGLRTMAALRR---ETLVEMKISCCKQLG-AVASCKALDLVRDRIEKLHIDCVWDGLELTE 434 (683)
Q Consensus 361 ~~~L~~L~L~~c~~it~~~l~~l~~~~~---~~L~~L~l~~c~~l~-~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~ 434 (683)
+++|++|++++|. +++.++..++..+. ++|++|++++|.... ....+......+++|+.++++.+.++.++.+
T Consensus 220 ~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 220 LKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred cCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 4566666666665 56655555544421 466666666553321 1111222222335566666665444444333
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.57 E-value=1.1e-13 Score=144.47 Aligned_cols=282 Identities=21% Similarity=0.210 Sum_probs=180.7
Q ss_pred HHHHHHhccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCcccc--CCChhHHHhhcCccCCCccEEEec
Q 038791 105 VTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFW--TEDLPPVLRAYPEKSANLTCLNLL 182 (683)
Q Consensus 105 ~~L~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~--~~~~~~~l~~~~~~~~~L~~L~L~ 182 (683)
.....+.+..++|+.|++.++.... .....+...+...++|++|+++++... ...+......+. .+++|+.|+++
T Consensus 13 ~~~~~~~~~l~~L~~l~l~~~~l~~--~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~ 89 (319)
T cd00116 13 ERATELLPKLLCLQVLRLEGNTLGE--EAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT-KGCGLQELDLS 89 (319)
T ss_pred cchHHHHHHHhhccEEeecCCCCcH--HHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH-hcCceeEEEcc
Confidence 3344555666779999999765321 011235666778888999999988664 122211112222 25599999999
Q ss_pred cCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHH---hcC-CCCcEEeecCCCCCCCCCCCCCCC
Q 038791 183 TTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIA---TNC-PKLTLLHLVDTSSLANERGDPDSD 258 (683)
Q Consensus 183 ~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~---~~~-~~L~~L~L~~c~~l~~~~~~~~~~ 258 (683)
+|.... .....+..+... ++|++|++++ +.+++.+...+. ..+ ++|++|++++|
T Consensus 90 ~~~~~~-~~~~~~~~l~~~-~~L~~L~ls~-------~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n------------- 147 (319)
T cd00116 90 DNALGP-DGCGVLESLLRS-SSLQELKLNN-------NGLGDRGLRLLAKGLKDLPPALEKLVLGRN------------- 147 (319)
T ss_pred CCCCCh-hHHHHHHHHhcc-CcccEEEeeC-------CccchHHHHHHHHHHHhCCCCceEEEcCCC-------------
Confidence 765221 123334444444 6699999942 256655554432 345 89999999976
Q ss_pred CCccCCCCcCHH---HHHHHHhCCCCCcEEEeccccCcCCChhHHHHH---HhcCCCCcEEEecCccccccc-ccccccc
Q 038791 259 GFTAEDASVSRE---GLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVL---KSKCSSLKVLKLGQFHGVCLA-IGWQLDG 331 (683)
Q Consensus 259 g~~~~~~~lt~~---~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l---~~~~~~L~~L~L~~c~~l~~~-~~~~~~~ 331 (683)
.++.. .+...+..+++|++|++++| .+++.+ +..+ ...+++|++|++++|.- ++. .......
T Consensus 148 -------~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~ 216 (319)
T cd00116 148 -------RLEGASCEALAKALRANRDLKELNLANN-GIGDAG--IRALAEGLKANCNLEVLDLNNNGL-TDEGASALAET 216 (319)
T ss_pred -------cCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHH--HHHHHHHHHhCCCCCEEeccCCcc-ChHHHHHHHHH
Confidence 34422 34445566789999999985 676544 3333 34457999999998743 211 1122334
Q ss_pred cccCCCCcEEEeccCCCCCHHHHHHHHhcC----CCCcEEEecCCCCCCHHHHHHHHHhcc--cCccEEEeecccccChh
Q 038791 332 VSLCGGLESLSIKNCGDLSDMGLVAIGRGC----RRLIKFELEGCKNVTVDGLRTMAALRR--ETLVEMKISCCKQLGAV 405 (683)
Q Consensus 332 l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~----~~L~~L~L~~c~~it~~~l~~l~~~~~--~~L~~L~l~~c~~l~~~ 405 (683)
+..+++|++|++++|. +++.++..++..+ ++|++|++++|. +++.+...+...+. ++|+++++++|..-...
T Consensus 217 ~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 217 LASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred hcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 5578999999999986 8998888887764 799999999998 88777766655431 68999999988765332
Q ss_pred hHHHHHHhcC--CCccEEEEe
Q 038791 406 ASCKALDLVR--DRIEKLHID 424 (683)
Q Consensus 406 ~~l~~l~~~~--~~L~~L~L~ 424 (683)
....+.+..+ +.|+.|++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 295 AQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHhhcCCchhhcccC
Confidence 1111111122 578888775
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=2.7e-16 Score=163.02 Aligned_cols=374 Identities=18% Similarity=0.204 Sum_probs=211.8
Q ss_pred CCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccC
Q 038791 144 CECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVN 223 (683)
Q Consensus 144 ~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~ 223 (683)
+|-.+-.|+++|.+..+.+|.....+. +++.|.|..... ..++.-++.|.+|++|.++- +.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt----~~~WLkLnrt~L------~~vPeEL~~lqkLEHLs~~H-------N~L~ 68 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMT----QMTWLKLNRTKL------EQVPEELSRLQKLEHLSMAH-------NQLI 68 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhh----heeEEEechhhh------hhChHHHHHHhhhhhhhhhh-------hhhH
Confidence 455667778888776667777666665 888888875431 22344446677888887731 1111
Q ss_pred HHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHH
Q 038791 224 DETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVL 303 (683)
Q Consensus 224 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l 303 (683)
.+.--...+|.|+.+.+.+ +++...|++.-+..+..|+.|+|+. ++++. .+.-
T Consensus 69 --~vhGELs~Lp~LRsv~~R~--------------------N~LKnsGiP~diF~l~dLt~lDLSh-NqL~E----vP~~ 121 (1255)
T KOG0444|consen 69 --SVHGELSDLPRLRSVIVRD--------------------NNLKNSGIPTDIFRLKDLTILDLSH-NQLRE----VPTN 121 (1255)
T ss_pred --hhhhhhccchhhHHHhhhc--------------------cccccCCCCchhcccccceeeecch-hhhhh----cchh
Confidence 1111123667777777764 3455556665566678888888887 56655 3344
Q ss_pred HhcCCCCcEEEecCccccccccccccccc-ccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHH
Q 038791 304 KSKCSSLKVLKLGQFHGVCLAIGWQLDGV-SLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRT 382 (683)
Q Consensus 304 ~~~~~~L~~L~L~~c~~l~~~~~~~~~~l-~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~ 382 (683)
..+.+++-.|+|++ +. ++.++..+ .++..|-.|+|+++. +. .-+..+ +.+..|++|+|++++ +.-..+..
T Consensus 122 LE~AKn~iVLNLS~----N~-IetIPn~lfinLtDLLfLDLS~Nr-Le-~LPPQ~-RRL~~LqtL~Ls~NP-L~hfQLrQ 192 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSY----NN-IETIPNSLFINLTDLLFLDLSNNR-LE-MLPPQI-RRLSMLQTLKLSNNP-LNHFQLRQ 192 (1255)
T ss_pred hhhhcCcEEEEccc----Cc-cccCCchHHHhhHhHhhhccccch-hh-hcCHHH-HHHhhhhhhhcCCCh-hhHHHHhc
Confidence 45567777888875 22 23344333 366777777777753 22 122222 336677888887777 44444444
Q ss_pred HHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhcc
Q 038791 383 MAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRK 462 (683)
Q Consensus 383 l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~ 462 (683)
+... ++|+.|.+++....-+ .++.-.....+|..++++|+.... .-.-+.
T Consensus 193 LPsm--tsL~vLhms~TqRTl~--N~Ptsld~l~NL~dvDlS~N~Lp~-------------------vPecly------- 242 (1255)
T KOG0444|consen 193 LPSM--TSLSVLHMSNTQRTLD--NIPTSLDDLHNLRDVDLSENNLPI-------------------VPECLY------- 242 (1255)
T ss_pred Cccc--hhhhhhhcccccchhh--cCCCchhhhhhhhhccccccCCCc-------------------chHHHh-------
Confidence 4433 5666666665433200 011111122345556665332210 000111
Q ss_pred ccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccch--hh
Q 038791 463 FCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFG--LS 540 (683)
Q Consensus 463 l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~--~~ 540 (683)
..++|+.|+| ++|.||.+... .+.-.+|+.|+++ .+ .+. |.
T Consensus 243 ---------------------~l~~LrrLNL---S~N~iteL~~~-~~~W~~lEtLNlS---rN---------QLt~LP~ 285 (1255)
T KOG0444|consen 243 ---------------------KLRNLRRLNL---SGNKITELNMT-EGEWENLETLNLS---RN---------QLTVLPD 285 (1255)
T ss_pred ---------------------hhhhhheecc---CcCceeeeecc-HHHHhhhhhhccc---cc---------hhccchH
Confidence 2344555554 23444333321 1223456777777 55 222 56
Q ss_pred hhccCcccccccccccccceeecccCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhh
Q 038791 541 CLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTL 620 (683)
Q Consensus 541 ~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L 620 (683)
.+.++++|++|.+..|.+.-. .+|++++.|..||.|.+.. |.+.. +|.. +.+|..|
T Consensus 286 avcKL~kL~kLy~n~NkL~Fe--GiPSGIGKL~~Levf~aan-------------------N~LEl-VPEg--lcRC~kL 341 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFE--GIPSGIGKLIQLEVFHAAN-------------------NKLEL-VPEG--LCRCVKL 341 (1255)
T ss_pred HHhhhHHHHHHHhccCccccc--CCccchhhhhhhHHHHhhc-------------------ccccc-Cchh--hhhhHHH
Confidence 677888888888877765422 2488887777776665533 33332 3554 8889999
Q ss_pred hhhhhccchhhHHHHHHhcCCcccccccccc---cCCCCCCCCc
Q 038791 621 RKLIIHGTAHEHFMMFFTRMPNVRDVQLRED---YYPAPADDST 661 (683)
Q Consensus 621 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 661 (683)
++|.++-|.-.+...-.--+|-|.-+-|||. -.|.-+||-+
T Consensus 342 ~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~ 385 (1255)
T KOG0444|consen 342 QKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDAR 385 (1255)
T ss_pred HHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchhh
Confidence 9999888865554455556677888888876 3455566653
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5e-14 Score=134.49 Aligned_cols=205 Identities=18% Similarity=0.241 Sum_probs=151.8
Q ss_pred CCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCC
Q 038791 174 ANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERG 253 (683)
Q Consensus 174 ~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~ 253 (683)
..|+.|||++.. ++...+..+.+.|.+|+.|.|. ...++|.....++ .-.+|+.|+++.|
T Consensus 185 sRlq~lDLS~s~----it~stl~~iLs~C~kLk~lSlE-------g~~LdD~I~~~iA-kN~~L~~lnlsm~-------- 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSV----ITVSTLHGILSQCSKLKNLSLE-------GLRLDDPIVNTIA-KNSNLVRLNLSMC-------- 244 (419)
T ss_pred hhhHHhhcchhh----eeHHHHHHHHHHHHhhhhcccc-------ccccCcHHHHHHh-ccccceeeccccc--------
Confidence 369999999643 8888899999999999999994 2478888888887 5688999999988
Q ss_pred CCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccc
Q 038791 254 DPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVS 333 (683)
Q Consensus 254 ~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~ 333 (683)
+.+|..++..++.+|+.|.+|+|++|.-.++.- -..+..--++|+.|+++||...-. ...++.+.
T Consensus 245 -----------sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V--tv~V~hise~l~~LNlsG~rrnl~--~sh~~tL~ 309 (419)
T KOG2120|consen 245 -----------SGFTENALQLLLSSCSRLDELNLSWCFLFTEKV--TVAVAHISETLTQLNLSGYRRNLQ--KSHLSTLV 309 (419)
T ss_pred -----------cccchhHHHHHHHhhhhHhhcCchHhhccchhh--hHHHhhhchhhhhhhhhhhHhhhh--hhHHHHHH
Confidence 467788889999999999999999986554431 122233457889999998765322 12333333
Q ss_pred -cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHH
Q 038791 334 -LCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALD 412 (683)
Q Consensus 334 -~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~ 412 (683)
.||+|.+|+|+.|..+++.....+.+ ++.|++|.++.|..|....+..+... |+|.+|++.+|-.-++ +..+.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~l~s~--psl~yLdv~g~vsdt~---mel~~ 383 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYDIIPETLLELNSK--PSLVYLDVFGCVSDTT---MELLK 383 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHh-cchheeeehhhhcCCChHHeeeeccC--cceEEEEeccccCchH---HHHHH
Confidence 78888888888888888877777766 88888888888887777766666555 8888888888865433 34344
Q ss_pred hcCCCcc
Q 038791 413 LVRDRIE 419 (683)
Q Consensus 413 ~~~~~L~ 419 (683)
..|++|+
T Consensus 384 e~~~~lk 390 (419)
T KOG2120|consen 384 EMLSHLK 390 (419)
T ss_pred HhCcccc
Confidence 4455544
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.44 E-value=3.1e-15 Score=155.26 Aligned_cols=352 Identities=17% Similarity=0.135 Sum_probs=193.4
Q ss_pred CCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHH
Q 038791 115 PGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQE 194 (683)
Q Consensus 115 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~ 194 (683)
|-++-++++++.. .++.++.....+..++-|.|..... ..+|..++.+. +|++|.+..|+ + ..
T Consensus 7 pFVrGvDfsgNDF-----sg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL~~lq----kLEHLs~~HN~----L--~~ 69 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDF-----SGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEELSRLQ----KLEHLSMAHNQ----L--IS 69 (1255)
T ss_pred ceeecccccCCcC-----CCCcCchhHHHhhheeEEEechhhh--hhChHHHHHHh----hhhhhhhhhhh----h--Hh
Confidence 4455566664432 2566777777888888888876554 46666676665 88888888665 1 11
Q ss_pred HHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHH
Q 038791 195 IREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQ 274 (683)
Q Consensus 195 l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~ 274 (683)
+..-++.+|.|+.+.+. .+.+...++..=.-.+..|+.|++++. .++ .++.
T Consensus 70 vhGELs~Lp~LRsv~~R-------~N~LKnsGiP~diF~l~dLt~lDLShN--------------------qL~--EvP~ 120 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVR-------DNNLKNSGIPTDIFRLKDLTILDLSHN--------------------QLR--EVPT 120 (1255)
T ss_pred hhhhhccchhhHHHhhh-------ccccccCCCCchhcccccceeeecchh--------------------hhh--hcch
Confidence 22223556777777772 123333333322226777888888752 221 1222
Q ss_pred HHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHH
Q 038791 275 LFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGL 354 (683)
Q Consensus 275 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l 354 (683)
-+..-+++-.|+|++ ++|.... ..+.-++..|-.|+|++ +. .+..+..+..+..|++|.|++++ +.-..+
T Consensus 121 ~LE~AKn~iVLNLS~-N~IetIP---n~lfinLtDLLfLDLS~----Nr-Le~LPPQ~RRL~~LqtL~Ls~NP-L~hfQL 190 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSY-NNIETIP---NSLFINLTDLLFLDLSN----NR-LEMLPPQIRRLSMLQTLKLSNNP-LNHFQL 190 (1255)
T ss_pred hhhhhcCcEEEEccc-CccccCC---chHHHhhHhHhhhcccc----ch-hhhcCHHHHHHhhhhhhhcCCCh-hhHHHH
Confidence 234456777888877 5554321 23344566777777775 11 13444555567788888888876 555445
Q ss_pred HHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHH
Q 038791 355 VAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTE 434 (683)
Q Consensus 355 ~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~ 434 (683)
..+.. +..|+.|.+++... |-..++.-...+ .+|+.++++. +++.. ++......++|+.|+|+++.++.-..
T Consensus 191 rQLPs-mtsL~vLhms~TqR-Tl~N~Ptsld~l-~NL~dvDlS~-N~Lp~---vPecly~l~~LrrLNLS~N~iteL~~- 262 (1255)
T KOG0444|consen 191 RQLPS-MTSLSVLHMSNTQR-TLDNIPTSLDDL-HNLRDVDLSE-NNLPI---VPECLYKLRNLRRLNLSGNKITELNM- 262 (1255)
T ss_pred hcCcc-chhhhhhhcccccc-hhhcCCCchhhh-hhhhhccccc-cCCCc---chHHHhhhhhhheeccCcCceeeeec-
Confidence 44443 55666677766552 333333323334 7788888884 44422 44455556788888888555431100
Q ss_pred HHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccc-cCCCCCC
Q 038791 435 SSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPI-VGLDDCP 513 (683)
Q Consensus 435 ~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~-~~L~~~~ 513 (683)
-+....++..+.++-+. ++. .+..+ ..+++|+.|.+ ..|.++-.++ .+++.+.
T Consensus 263 ------------------~~~~W~~lEtLNlSrNQ---Lt~-LP~av-cKL~kL~kLy~---n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 263 ------------------TEGEWENLETLNLSRNQ---LTV-LPDAV-CKLTKLTKLYA---NNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred ------------------cHHHHhhhhhhccccch---hcc-chHHH-hhhHHHHHHHh---ccCcccccCCccchhhhh
Confidence 00111122222221111 100 01111 12566666664 2344433322 3467777
Q ss_pred CcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCC
Q 038791 514 VLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGET 570 (683)
Q Consensus 514 ~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~ 570 (683)
+|+.+... ++. + ..-|.++..|++|++|.|++|.++ +.|..+-
T Consensus 317 ~Levf~aa---nN~-L------ElVPEglcRC~kL~kL~L~~NrLi----TLPeaIH 359 (1255)
T KOG0444|consen 317 QLEVFHAA---NNK-L------ELVPEGLCRCVKLQKLKLDHNRLI----TLPEAIH 359 (1255)
T ss_pred hhHHHHhh---ccc-c------ccCchhhhhhHHHHHhccccccee----echhhhh
Confidence 77777766 551 1 223778888888888888888876 4465543
No 13
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.43 E-value=2.9e-13 Score=149.75 Aligned_cols=36 Identities=11% Similarity=-0.171 Sum_probs=26.1
Q ss_pred CCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhccccc
Q 038791 6 INNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQ 42 (683)
Q Consensus 6 i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~ 42 (683)
....|++....++... ...+......+++ |......
T Consensus 45 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 45 TLLLPDELLADLLLKL-VVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeccccchhhhccccc-ccccccccchhhhhhhhhhhh
Confidence 4456677777777777 7777777888888 8777644
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=2.1e-12 Score=155.80 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=29.8
Q ss_pred CCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCC
Q 038791 278 GLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCG 347 (683)
Q Consensus 278 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~ 347 (683)
.+++|+.|++++|..+.. ++..+.++++|+.|++.+|..+.. .+..+ .+++|+.|++++|.
T Consensus 655 ~l~~Le~L~L~~c~~L~~----lp~si~~L~~L~~L~L~~c~~L~~----Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVE----LPSSIQYLNKLEDLDMSRCENLEI----LPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred cCCcccEEEecCCCCccc----cchhhhccCCCCEEeCCCCCCcCc----cCCcC-CCCCCCEEeCCCCC
Confidence 355566666655554433 233334555666666665554422 11111 45555555555554
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.39 E-value=6.5e-13 Score=146.97 Aligned_cols=148 Identities=34% Similarity=0.524 Sum_probs=91.8
Q ss_pred HHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCC--HHHHHHHHhhCCCCceEEe-ceec
Q 038791 138 IPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFK--AQEIREITAACPSLNKLLV-ACTF 214 (683)
Q Consensus 138 ~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~--~~~l~~l~~~~~~L~~L~L-~c~~ 214 (683)
......++.|+.|.+.++...++.. +..+...|++|+.|+++++ |..+. ......+...|++|+.|++ .|
T Consensus 181 ~~l~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-- 253 (482)
T KOG1947|consen 181 LRLLSSCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGC--CLLITLSPLLLLLLLSICRKLKSLDLSGC-- 253 (482)
T ss_pred HHHHhhCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCc--ccccccchhHhhhhhhhcCCcCccchhhh--
Confidence 3444556777777777775443322 1122233457777777731 22222 2223345566777777777 33
Q ss_pred CCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcC
Q 038791 215 DPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVR 294 (683)
Q Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~ 294 (683)
..++|.++..++..|++|++|.+.+| ..+++.++..+...|++|++|++++|..++
T Consensus 254 -----~~isd~~l~~l~~~c~~L~~L~l~~c-------------------~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 254 -----GLVTDIGLSALASRCPNLETLSLSNC-------------------SNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred -----hccCchhHHHHHhhCCCcceEccCCC-------------------CccchhHHHHHHHhcCcccEEeeecCccch
Confidence 24777777777777777777777666 236777777777777777777777777776
Q ss_pred CChhHHHHHHhcCCCCcEEEecCc
Q 038791 295 DSGPVLEVLKSKCSSLKVLKLGQF 318 (683)
Q Consensus 295 ~~~~~l~~l~~~~~~L~~L~L~~c 318 (683)
+.+ +..++.+|++|+.|.+..+
T Consensus 310 d~~--l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 310 DSG--LEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHH--HHHHHHhCcchhhhhhhhc
Confidence 655 5566666777777665543
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.37 E-value=1.5e-12 Score=157.06 Aligned_cols=250 Identities=16% Similarity=0.157 Sum_probs=126.3
Q ss_pred ccCCCccEEEeccccccccCCCcccHHHHhhcCC-CCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCC
Q 038791 112 PQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCE-CLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGF 190 (683)
Q Consensus 112 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i 190 (683)
..+++|+.|++..............++..+..+| +|+.|++.++.. ..+|..+ ...+|++|++.++. +
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f-----~~~~L~~L~L~~s~----l 623 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF-----RPENLVKLQMQGSK----L 623 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC-----CccCCcEEECcCcc----c
Confidence 4567777777753211000000111222233333 577777776643 2333322 12578888888543 2
Q ss_pred CHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHH
Q 038791 191 KAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSRE 270 (683)
Q Consensus 191 ~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~ 270 (683)
.. +..-...+++|+.|+++.. ..+. .+..+ ..+++|+.|++.+|..+..
T Consensus 624 ~~--L~~~~~~l~~Lk~L~Ls~~------~~l~--~ip~l-s~l~~Le~L~L~~c~~L~~-------------------- 672 (1153)
T PLN03210 624 EK--LWDGVHSLTGLRNIDLRGS------KNLK--EIPDL-SMATNLETLKLSDCSSLVE-------------------- 672 (1153)
T ss_pred cc--cccccccCCCCCEEECCCC------CCcC--cCCcc-ccCCcccEEEecCCCCccc--------------------
Confidence 21 2222356788888888321 1111 11122 3678888888888755422
Q ss_pred HHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCC
Q 038791 271 GLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLS 350 (683)
Q Consensus 271 ~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt 350 (683)
++..+..+++|+.|++++|+.+..- +.. .++++|+.|++.+|..+... +. ..++|+.|++.++. ++
T Consensus 673 -lp~si~~L~~L~~L~L~~c~~L~~L----p~~-i~l~sL~~L~Lsgc~~L~~~----p~---~~~nL~~L~L~~n~-i~ 738 (1153)
T PLN03210 673 -LPSSIQYLNKLEDLDMSRCENLEIL----PTG-INLKSLYRLNLSGCSRLKSF----PD---ISTNISWLDLDETA-IE 738 (1153)
T ss_pred -cchhhhccCCCCEEeCCCCCCcCcc----CCc-CCCCCCCEEeCCCCCCcccc----cc---ccCCcCeeecCCCc-cc
Confidence 2333556888899999888777542 222 25788888888887654221 11 23567777777654 32
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCCC--H--HHHHH-HHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 351 DMGLVAIGRGCRRLIKFELEGCKNVT--V--DGLRT-MAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 351 ~~~l~~l~~~~~~L~~L~L~~c~~it--~--~~l~~-l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
. +.... .+++|++|.+.++.... + ..+.. ..... ++|+.|++++|+.+.. ++.....+++|+.|+++
T Consensus 739 ~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~-~sL~~L~Ls~n~~l~~---lP~si~~L~~L~~L~Ls 810 (1153)
T PLN03210 739 E--FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS-PSLTRLFLSDIPSLVE---LPSSIQNLHKLEHLEIE 810 (1153)
T ss_pred c--ccccc-cccccccccccccchhhccccccccchhhhhcc-ccchheeCCCCCCccc---cChhhhCCCCCCEEECC
Confidence 2 11111 24556666655433100 0 00000 01112 5666666666655432 22233345666666665
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=1.6e-11 Score=120.47 Aligned_cols=270 Identities=20% Similarity=0.273 Sum_probs=173.0
Q ss_pred HHHHHhccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCcccc--CCChhHHHhhcC---ccCCCccEEE
Q 038791 106 TLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFW--TEDLPPVLRAYP---EKSANLTCLN 180 (683)
Q Consensus 106 ~L~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~--~~~~~~~l~~~~---~~~~~L~~L~ 180 (683)
.+.........++.|+|+++.... .-...+...+.+.++|+..++++.... .+.+|..+..+. ..|+.|++|+
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~--EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld 98 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGT--EAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD 98 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhH--HHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence 344555667789999999766321 012235566777889999999886421 234555444332 3567999999
Q ss_pred eccCCCCCCCCHHHHHHHHhhCCCCceEEe-ceecCCCCccccCHHHHHHHH------------hcCCCCcEEeecCCCC
Q 038791 181 LLTTSFTEGFKAQEIREITAACPSLNKLLV-ACTFDPRYIGFVNDETLSAIA------------TNCPKLTLLHLVDTSS 247 (683)
Q Consensus 181 L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~~~l~~l~------------~~~~~L~~L~L~~c~~ 247 (683)
||.|.+-.. .-.++..++++|..|++|.| +| .++..+-..++ ..-++|+++...+
T Consensus 99 LSDNA~G~~-g~~~l~~ll~s~~~L~eL~L~N~--------Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r--- 166 (382)
T KOG1909|consen 99 LSDNAFGPK-GIRGLEELLSSCTDLEELYLNNC--------GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR--- 166 (382)
T ss_pred ccccccCcc-chHHHHHHHHhccCHHHHhhhcC--------CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec---
Confidence 998873221 23457778889999999999 54 34443333322 2456788888764
Q ss_pred CCCCCCCCCCCCCccCCCCcCH---HHHHHHHhCCCCCcEEEeccccCcCCChh-HHHHHHhcCCCCcEEEecCcccccc
Q 038791 248 LANERGDPDSDGFTAEDASVSR---EGLIQLFSGLPLLEELVLDVCKNVRDSGP-VLEVLKSKCSSLKVLKLGQFHGVCL 323 (683)
Q Consensus 248 l~~~~~~~~~~g~~~~~~~lt~---~~l~~l~~~~~~L~~L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~L~~c~~l~~ 323 (683)
+++-+ ..+...++.++.|+.+.+.. +.+...+. ++..-+..|++|+.|+|.+ +.
T Consensus 167 -----------------Nrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~D----Nt 224 (382)
T KOG1909|consen 167 -----------------NRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRD----NT 224 (382)
T ss_pred -----------------cccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeeccc----ch
Confidence 22222 34556677788999999987 67766664 3444457789999999876 33
Q ss_pred ccccccc----ccccCCCCcEEEeccCCCCCHHHHHHHH----hcCCCCcEEEecCCCCCCHHHHHHHHHhc--ccCccE
Q 038791 324 AIGWQLD----GVSLCGGLESLSIKNCGDLSDMGLVAIG----RGCRRLIKFELEGCKNVTVDGLRTMAALR--RETLVE 393 (683)
Q Consensus 324 ~~~~~~~----~l~~~~~L~~L~L~~~~~lt~~~l~~l~----~~~~~L~~L~L~~c~~it~~~l~~l~~~~--~~~L~~ 393 (683)
.+..+-. .+..+++|+.|++++|. +.+.+..++. ...|+|+.|.+.+|. |+..+...+.... .|.|+.
T Consensus 225 ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~k 302 (382)
T KOG1909|consen 225 FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEK 302 (382)
T ss_pred hhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHH
Confidence 3222222 33467888888888886 6766655544 456788888888888 7777655544321 277888
Q ss_pred EEeecccccChhhHHHHHHh
Q 038791 394 MKISCCKQLGAVASCKALDL 413 (683)
Q Consensus 394 L~l~~c~~l~~~~~l~~l~~ 413 (683)
|+|++|..-..+..+..+..
T Consensus 303 LnLngN~l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 303 LNLNGNRLGEKDEGIDEIAS 322 (382)
T ss_pred hcCCcccccccchhHHHHHH
Confidence 88888876433344544544
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.23 E-value=2.5e-12 Score=140.28 Aligned_cols=162 Identities=20% Similarity=0.201 Sum_probs=107.2
Q ss_pred ccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceee
Q 038791 483 KTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYA 562 (683)
Q Consensus 483 ~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~ 562 (683)
...+.|+.|.+ .+|.+++.....|.+.++|+.|+++ +++.. .|..+.+.+++.|+.|.|++|.++
T Consensus 356 ~~~~~Lq~Lyl---anN~Ltd~c~p~l~~~~hLKVLhLs---yNrL~------~fpas~~~kle~LeeL~LSGNkL~--- 420 (1081)
T KOG0618|consen 356 NNHAALQELYL---ANNHLTDSCFPVLVNFKHLKVLHLS---YNRLN------SFPASKLRKLEELEELNLSGNKLT--- 420 (1081)
T ss_pred hhhHHHHHHHH---hcCcccccchhhhccccceeeeeec---ccccc------cCCHHHHhchHHhHHHhcccchhh---
Confidence 34567888886 4588888888778888999999998 77533 455667888889999999888877
Q ss_pred cccCCCCCCchhhHHHhhcccceeeeccccCCCCC---CcCccCcccC-cccchHHHHhhhhhhhhhccchh---hHHHH
Q 038791 563 LTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQ---DRDVNQRSLT-LPASGLIAQCLTLRKLIIHGTAH---EHFMM 635 (683)
Q Consensus 563 ~~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~---~~~~n~~~~~-~p~~~~l~~~~~L~~l~~~~~~~---~~~~~ 635 (683)
+.|..+.+++.|+.+..++-.-+.++++.-.|+- |.+.|+++-- +|.+ +-. ++|++|+++||.. +|---
T Consensus 421 -~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~--~p~-p~LkyLdlSGN~~l~~d~~~l 496 (1081)
T KOG0618|consen 421 -TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEA--LPS-PNLKYLDLSGNTRLVFDHKTL 496 (1081)
T ss_pred -hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhh--CCC-cccceeeccCCcccccchhhh
Confidence 4577778888888888877443455555443322 6677776653 3332 111 6899999999984 22111
Q ss_pred HHhcCCcccccccccccCCCCCCC-Ccchhchh
Q 038791 636 FFTRMPNVRDVQLREDYYPAPADD-STTEMRED 667 (683)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 667 (683)
-.++--..+|+-+. |+|+.. ..+-|+.|
T Consensus 497 ~~l~~l~~~~i~~~----~~~d~~~n~~~~t~G 525 (1081)
T KOG0618|consen 497 KVLKSLSQMDITLN----NTPDGNVNAFLWTYG 525 (1081)
T ss_pred HHhhhhhheecccC----CCCccccceeheeec
Confidence 12344455666665 677655 44444444
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=2.3e-10 Score=112.47 Aligned_cols=278 Identities=19% Similarity=0.202 Sum_probs=178.1
Q ss_pred cccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHH------HHHHhhCCCCce
Q 038791 134 GAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEI------REITAACPSLNK 207 (683)
Q Consensus 134 ~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l------~~l~~~~~~L~~ 207 (683)
...+.+.......++.++|+++++.++.. .++...-..-++|+..++++. +.....++.. ...+..||+|++
T Consensus 19 ~~~v~~~~~~~~s~~~l~lsgnt~G~EAa-~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 19 EKDVEEELEPMDSLTKLDLSGNTFGTEAA-RAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQK 96 (382)
T ss_pred hhhHHHHhcccCceEEEeccCCchhHHHH-HHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence 34466677788899999999998865432 333333233449999999964 2333333222 223356899999
Q ss_pred EEeceecCCCCccccC---HHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHH-----HHHHHhCC
Q 038791 208 LLVACTFDPRYIGFVN---DETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREG-----LIQLFSGL 279 (683)
Q Consensus 208 L~L~c~~~~~~~~~l~---~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~-----l~~l~~~~ 279 (683)
|+|+ -|.++ ...+..+.++|..|++|.+.+|. +.......-... .......-
T Consensus 97 ldLS-------DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-------------lg~~ag~~l~~al~~l~~~kk~~~~ 156 (382)
T KOG1909|consen 97 LDLS-------DNAFGPKGIRGLEELLSSCTDLEELYLNNCG-------------LGPEAGGRLGRALFELAVNKKAASK 156 (382)
T ss_pred eecc-------ccccCccchHHHHHHHHhccCHHHHhhhcCC-------------CChhHHHHHHHHHHHHHHHhccCCC
Confidence 9994 22333 34556667789999999998872 111000000011 11223345
Q ss_pred CCCcEEEeccccCcCCCh-hHHHHHHhcCCCCcEEEecCccccccccccc----ccccccCCCCcEEEeccCCCCCHHHH
Q 038791 280 PLLEELVLDVCKNVRDSG-PVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQ----LDGVSLCGGLESLSIKNCGDLSDMGL 354 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~-~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~----~~~l~~~~~L~~L~L~~~~~lt~~~l 354 (683)
++|+++.... +.+.+.+ .++....+.++.|+.+.+... .+...+ ..++..|++|+.|+|..+. ++-.+-
T Consensus 157 ~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN----~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs 230 (382)
T KOG1909|consen 157 PKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQN----GIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGS 230 (382)
T ss_pred cceEEEEeec-cccccccHHHHHHHHHhccccceEEEecc----cccCchhHHHHHHHHhCCcceeeecccch-hhhHHH
Confidence 7899999877 5555444 345566678899999999862 221222 2445589999999999976 777776
Q ss_pred HHHHh---cCCCCcEEEecCCCCCCHHHHHHHHHhc---ccCccEEEeecccccChhhH-HHHHHhcCCCccEEEEeeec
Q 038791 355 VAIGR---GCRRLIKFELEGCKNVTVDGLRTMAALR---RETLVEMKISCCKQLGAVAS-CKALDLVRDRIEKLHIDCVW 427 (683)
Q Consensus 355 ~~l~~---~~~~L~~L~L~~c~~it~~~l~~l~~~~---~~~L~~L~l~~c~~l~~~~~-l~~l~~~~~~L~~L~L~c~~ 427 (683)
.+++. .+|+|+.|++++|. +...|...+.... .|+|+.|.+.+|.-..+... +......-|.|+.|+|++|.
T Consensus 231 ~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 66664 35789999999998 7777766665432 28999999998865422211 11112235889999999777
Q ss_pred C--ChhhHHHHhhhc
Q 038791 428 D--GLELTESSESKV 440 (683)
Q Consensus 428 ~--~~~~~~~~~~~~ 440 (683)
. .++++..+...+
T Consensus 310 l~e~de~i~ei~~~~ 324 (382)
T KOG1909|consen 310 LGEKDEGIDEIASKF 324 (382)
T ss_pred ccccchhHHHHHHhc
Confidence 7 577777776554
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.94 E-value=1.2e-10 Score=127.54 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=32.7
Q ss_pred hhhhccCcccccccccccccceeecccC-CCCCCchhhHHHhhcc
Q 038791 539 LSCLTRYPQLTKLRLEFGETIGYALTAP-GGETDLTLWDRFFFNG 582 (683)
Q Consensus 539 ~~~l~~l~~L~~L~l~~~~~~g~~~~~p-~~~~~l~~l~~~~l~~ 582 (683)
...+.++++|+.|+|..|.+..+ | +.+.+|+.||.++++|
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~f----pas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSF----PASKLRKLEELEELNLSG 416 (1081)
T ss_pred hhhhccccceeeeeecccccccC----CHHHHhchHHhHHHhccc
Confidence 45678899999999999987754 4 3567888999999988
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.88 E-value=3e-12 Score=127.21 Aligned_cols=245 Identities=16% Similarity=0.102 Sum_probs=127.9
Q ss_pred ccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCC
Q 038791 112 PQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFK 191 (683)
Q Consensus 112 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~ 191 (683)
.+.+.|..|++..+.. ..+++.++....++.|+.+.+.. ..+|..+...+ +|..|+.++|..-.
T Consensus 65 ~nL~~l~vl~~~~n~l-------~~lp~aig~l~~l~~l~vs~n~l--s~lp~~i~s~~----~l~~l~~s~n~~~e--- 128 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKL-------SQLPAAIGELEALKSLNVSHNKL--SELPEQIGSLI----SLVKLDCSSNELKE--- 128 (565)
T ss_pred hcccceeEEEeccchh-------hhCCHHHHHHHHHHHhhcccchH--hhccHHHhhhh----hhhhhhccccceee---
Confidence 3445566666654432 22455555666677777776655 24555555555 77777777654211
Q ss_pred HHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHH
Q 038791 192 AQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREG 271 (683)
Q Consensus 192 ~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~ 271 (683)
+..-+..|-.|+.++.. .+.++. ....++ +|.+|..|++.+. .++. -
T Consensus 129 ---l~~~i~~~~~l~dl~~~-------~N~i~s-lp~~~~-~~~~l~~l~~~~n--------------------~l~~-l 175 (565)
T KOG0472|consen 129 ---LPDSIGRLLDLEDLDAT-------NNQISS-LPEDMV-NLSKLSKLDLEGN--------------------KLKA-L 175 (565)
T ss_pred ---cCchHHHHhhhhhhhcc-------cccccc-CchHHH-HHHHHHHhhcccc--------------------chhh-C
Confidence 11112344455555552 112211 112222 4555666666432 1111 0
Q ss_pred HHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCH
Q 038791 272 LIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSD 351 (683)
Q Consensus 272 l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~ 351 (683)
.+... +++.|++|+... +.++. ++.-.+.+.+|..|++.+ ++. ..+..|+.|..|++|+++.+. + .
T Consensus 176 ~~~~i-~m~~L~~ld~~~-N~L~t----lP~~lg~l~~L~~LyL~~----Nki--~~lPef~gcs~L~Elh~g~N~-i-~ 241 (565)
T KOG0472|consen 176 PENHI-AMKRLKHLDCNS-NLLET----LPPELGGLESLELLYLRR----NKI--RFLPEFPGCSLLKELHVGENQ-I-E 241 (565)
T ss_pred CHHHH-HHHHHHhcccch-hhhhc----CChhhcchhhhHHHHhhh----ccc--ccCCCCCccHHHHHHHhcccH-H-H
Confidence 01111 155677777533 22222 333334566777777765 222 223467788888888888753 2 3
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecC
Q 038791 352 MGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWD 428 (683)
Q Consensus 352 ~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~ 428 (683)
...++..+.+++|..||++.++ +++... .+... .+|+.||++++... +++.-.+.. .|+.|.+.++-+
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNk-lke~Pd-e~clL--rsL~rLDlSNN~is----~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNK-LKEVPD-EICLL--RSLERLDLSNNDIS----SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhHHHHhcccccceeeeccccc-cccCch-HHHHh--hhhhhhcccCCccc----cCCcccccc-eeeehhhcCCch
Confidence 3445566678889999998887 555432 23223 77889999865332 233333333 566666655443
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.9e-09 Score=108.89 Aligned_cols=162 Identities=20% Similarity=0.143 Sum_probs=111.6
Q ss_pred hcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCc
Q 038791 232 TNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLK 311 (683)
Q Consensus 232 ~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~ 311 (683)
++..+|+...+.+| .+...+.......||+++.|+|+. ++-.....+..++..+|+|+
T Consensus 118 sn~kkL~~IsLdn~--------------------~V~~~~~~~~~k~~~~v~~LdLS~--NL~~nw~~v~~i~eqLp~Le 175 (505)
T KOG3207|consen 118 SNLKKLREISLDNY--------------------RVEDAGIEEYSKILPNVRDLDLSR--NLFHNWFPVLKIAEQLPSLE 175 (505)
T ss_pred hhHHhhhheeecCc--------------------cccccchhhhhhhCCcceeecchh--hhHHhHHHHHHHHHhcccch
Confidence 46677888888765 233333334566799999999987 34333444778888999999
Q ss_pred EEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCc
Q 038791 312 VLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETL 391 (683)
Q Consensus 312 ~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L 391 (683)
.|+++...-.+.. +.. .-...++|+.|.|+.|+ ++...+..+...+|+|+.|++.+|..+.-..... ... ..|
T Consensus 176 ~LNls~Nrl~~~~-~s~--~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~-~~L 248 (505)
T KOG3207|consen 176 NLNLSSNRLSNFI-SSN--TTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KIL-QTL 248 (505)
T ss_pred hcccccccccCCc-ccc--chhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhh-hHH
Confidence 9999863222111 111 11167899999999998 9999999999999999999999996333222221 112 679
Q ss_pred cEEEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 392 VEMKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 392 ~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
++|+|++++.++.+ ........|.|+.|+++
T Consensus 249 ~~LdLs~N~li~~~--~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 249 QELDLSNNNLIDFD--QGYKVGTLPGLNQLNLS 279 (505)
T ss_pred hhccccCCcccccc--cccccccccchhhhhcc
Confidence 99999999888432 11234456889988887
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.5e-09 Score=108.03 Aligned_cols=210 Identities=18% Similarity=0.205 Sum_probs=119.9
Q ss_pred hcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEec-eecCCCCcc
Q 038791 142 EHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVA-CTFDPRYIG 220 (683)
Q Consensus 142 ~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~-c~~~~~~~~ 220 (683)
.++++|++..|.++.+.........+ .|++++.|+|+.|-+ -....+..++..+|+|+.|+|+ ..+..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k----~~~~v~~LdLS~NL~---~nw~~v~~i~eqLp~Le~LNls~Nrl~~---- 186 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSK----ILPNVRDLDLSRNLF---HNWFPVLKIAEQLPSLENLNLSSNRLSN---- 186 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhh----hCCcceeecchhhhH---HhHHHHHHHHHhcccchhcccccccccC----
Confidence 45667778888777653221112233 344888888886642 1234566777888888888883 21110
Q ss_pred ccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHH
Q 038791 221 FVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVL 300 (683)
Q Consensus 221 ~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l 300 (683)
. .+.. .....++|+.|.++.| .++...+..+...+|+|+.|++.+.+.+.... .
T Consensus 187 ~-~~s~---~~~~l~~lK~L~l~~C--------------------Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~--~ 240 (505)
T KOG3207|consen 187 F-ISSN---TTLLLSHLKQLVLNSC--------------------GLSWKDVQWILLTFPSLEVLYLEANEIILIKA--T 240 (505)
T ss_pred C-cccc---chhhhhhhheEEeccC--------------------CCCHHHHHHHHHhCCcHHHhhhhcccccceec--c
Confidence 0 0110 1115677888888877 46667777777888888888888733332221 1
Q ss_pred HHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHH-----HHHhcCCCCcEEEecCCCCC
Q 038791 301 EVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLV-----AIGRGCRRLIKFELEGCKNV 375 (683)
Q Consensus 301 ~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~-----~l~~~~~~L~~L~L~~c~~i 375 (683)
. ......|+.|+|++...+.. .....++.+|.|+.|.++.|+ +++.... ......++|++|++..|+ +
T Consensus 241 ~--~~i~~~L~~LdLs~N~li~~---~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I 313 (505)
T KOG3207|consen 241 S--TKILQTLQELDLSNNNLIDF---DQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN-I 313 (505)
T ss_pred h--hhhhhHHhhccccCCccccc---ccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc-c
Confidence 1 12356788888887443321 223445677888888888775 4443222 223346777777777776 3
Q ss_pred CH-HHHHHHHHhcccCccEEEee
Q 038791 376 TV-DGLRTMAALRRETLVEMKIS 397 (683)
Q Consensus 376 t~-~~l~~l~~~~~~~L~~L~l~ 397 (683)
.+ ..+..+-.. ++|+.|.+.
T Consensus 314 ~~w~sl~~l~~l--~nlk~l~~~ 334 (505)
T KOG3207|consen 314 RDWRSLNHLRTL--ENLKHLRIT 334 (505)
T ss_pred ccccccchhhcc--chhhhhhcc
Confidence 22 223333222 566666655
No 24
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.71 E-value=3.8e-09 Score=75.17 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=32.0
Q ss_pred CCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhccccc
Q 038791 6 INNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQ 42 (683)
Q Consensus 6 i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~ 42 (683)
|..||+||+.+||+|| +++|+.++++||| |++++.+
T Consensus 1 i~~LP~Eil~~If~~L-~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL-DPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHCC
Confidence 6799999999999999 9999999999999 9999953
No 25
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.61 E-value=1.1e-10 Score=116.17 Aligned_cols=229 Identities=16% Similarity=0.120 Sum_probs=142.9
Q ss_pred HHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCC
Q 038791 137 FIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDP 216 (683)
Q Consensus 137 l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~ 216 (683)
+.+-+.++..|..|++..+... ..|++++... .++.|+.+.|+ -..++.-+...++|.+|+++..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~----~l~~l~vs~n~------ls~lp~~i~s~~~l~~l~~s~n--- 124 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLS--QLPAAIGELE----ALKSLNVSHNK------LSELPEQIGSLISLVKLDCSSN--- 124 (565)
T ss_pred ccHhhhcccceeEEEeccchhh--hCCHHHHHHH----HHHHhhcccch------HhhccHHHhhhhhhhhhhcccc---
Confidence 4455677888899999888763 5667777776 88888888665 2224444456677888877310
Q ss_pred CCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCC
Q 038791 217 RYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDS 296 (683)
Q Consensus 217 ~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~ 296 (683)
....+.+ .+ ..|..|+.|+..+ +.++ .++.-+..+.+|..|++.+ +++...
T Consensus 125 -~~~el~~----~i-~~~~~l~dl~~~~--------------------N~i~--slp~~~~~~~~l~~l~~~~-n~l~~l 175 (565)
T KOG0472|consen 125 -ELKELPD----SI-GRLLDLEDLDATN--------------------NQIS--SLPEDMVNLSKLSKLDLEG-NKLKAL 175 (565)
T ss_pred -ceeecCc----hH-HHHhhhhhhhccc--------------------cccc--cCchHHHHHHHHHHhhccc-cchhhC
Confidence 0011112 22 2455666666543 2222 2222334566788888877 566554
Q ss_pred hhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCC
Q 038791 297 GPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVT 376 (683)
Q Consensus 297 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it 376 (683)
. +... +++.|++|+... + ..+..+..++.+.+|+.|++..+. +.. +..+.. |..|++|.++.+. |.
T Consensus 176 ~---~~~i-~m~~L~~ld~~~----N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~--lPef~g-cs~L~Elh~g~N~-i~ 241 (565)
T KOG0472|consen 176 P---ENHI-AMKRLKHLDCNS----N-LLETLPPELGGLESLELLYLRRNK-IRF--LPEFPG-CSLLKELHVGENQ-IE 241 (565)
T ss_pred C---HHHH-HHHHHHhcccch----h-hhhcCChhhcchhhhHHHHhhhcc-ccc--CCCCCc-cHHHHHHHhcccH-HH
Confidence 2 2222 377888888763 2 235677888899999999999864 432 334544 8889999987765 33
Q ss_pred HHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCC
Q 038791 377 VDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDG 429 (683)
Q Consensus 377 ~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~ 429 (683)
.-.++..+.+ ++|..||+.++..- . ++.-+...++|+.|+++.+.++
T Consensus 242 -~lpae~~~~L-~~l~vLDLRdNklk-e---~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 242 -MLPAEHLKHL-NSLLVLDLRDNKLK-E---VPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred -hhHHHHhccc-ccceeeeccccccc-c---CchHHHHhhhhhhhcccCCccc
Confidence 2334455556 89999999987643 2 2223334478999999965554
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.58 E-value=5.1e-08 Score=110.06 Aligned_cols=23 Identities=17% Similarity=0.018 Sum_probs=13.8
Q ss_pred hhhhccCccccccccccccccee
Q 038791 539 LSCLTRYPQLTKLRLEFGETIGY 561 (683)
Q Consensus 539 ~~~l~~l~~L~~L~l~~~~~~g~ 561 (683)
|..+..+++|+.|+|++|.+.|.
T Consensus 438 P~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 438 PESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ChHHhhccCCCeEECCCCCCCch
Confidence 34455666666666666666654
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.51 E-value=1.1e-07 Score=107.28 Aligned_cols=253 Identities=17% Similarity=0.153 Sum_probs=131.9
Q ss_pred CccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHH
Q 038791 116 GLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEI 195 (683)
Q Consensus 116 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l 195 (683)
+-..|+++.+... .++..+. ++|+.|++.+|.+. .+| ...++|++|+|++|. ++. +
T Consensus 202 ~~~~LdLs~~~Lt-------sLP~~l~--~~L~~L~L~~N~Lt--~LP-------~lp~~Lk~LdLs~N~----Lts--L 257 (788)
T PRK15387 202 GNAVLNVGESGLT-------TLPDCLP--AHITTLVIPDNNLT--SLP-------ALPPELRTLEVSGNQ----LTS--L 257 (788)
T ss_pred CCcEEEcCCCCCC-------cCCcchh--cCCCEEEccCCcCC--CCC-------CCCCCCcEEEecCCc----cCc--c
Confidence 4566777654321 1222221 36788888877652 222 223588888888664 221 1
Q ss_pred HHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHH
Q 038791 196 REITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQL 275 (683)
Q Consensus 196 ~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l 275 (683)
+ ...++|+.|+++ .+.++ .+....++|+.|++.++ .++. ++
T Consensus 258 P---~lp~sL~~L~Ls-------~N~L~-----~Lp~lp~~L~~L~Ls~N--------------------~Lt~--LP-- 298 (788)
T PRK15387 258 P---VLPPGLLELSIF-------SNPLT-----HLPALPSGLCKLWIFGN--------------------QLTS--LP-- 298 (788)
T ss_pred c---Ccccccceeecc-------CCchh-----hhhhchhhcCEEECcCC--------------------cccc--cc--
Confidence 1 123677777772 11222 12222356777777653 2221 11
Q ss_pred HhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCccccccccccccccccc-CCCCcEEEeccCCCCCHHHH
Q 038791 276 FSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSL-CGGLESLSIKNCGDLSDMGL 354 (683)
Q Consensus 276 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~-~~~L~~L~L~~~~~lt~~~l 354 (683)
...++|+.|++++ +.++. ++.+ ..+|+.|.+.++.- ..+.. .++|++|+|+++. ++.
T Consensus 299 -~~p~~L~~LdLS~-N~L~~----Lp~l---p~~L~~L~Ls~N~L---------~~LP~lp~~Lq~LdLS~N~-Ls~--- 356 (788)
T PRK15387 299 -VLPPGLQELSVSD-NQLAS----LPAL---PSELCKLWAYNNQL---------TSLPTLPSGLQELSVSDNQ-LAS--- 356 (788)
T ss_pred -ccccccceeECCC-Ccccc----CCCC---cccccccccccCcc---------ccccccccccceEecCCCc-cCC---
Confidence 1246788888877 35543 2211 23566777665321 11111 1367777777754 443
Q ss_pred HHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHH
Q 038791 355 VAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTE 434 (683)
Q Consensus 355 ~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~ 434 (683)
+....++|+.|++++|. ++. +.. .. ++|+.|++++|... ..+ . ..++|+.|+++.+.++
T Consensus 357 --LP~lp~~L~~L~Ls~N~-L~~--LP~---l~-~~L~~LdLs~N~Lt-~LP---~---l~s~L~~LdLS~N~Ls----- 415 (788)
T PRK15387 357 --LPTLPSELYKLWAYNNR-LTS--LPA---LP-SGLKELIVSGNRLT-SLP---V---LPSELKELMVSGNRLT----- 415 (788)
T ss_pred --CCCCCcccceehhhccc-ccc--Ccc---cc-cccceEEecCCccc-CCC---C---cccCCCEEEccCCcCC-----
Confidence 11123467777777665 442 222 12 56777777766432 211 1 1246777777622210
Q ss_pred HHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCC
Q 038791 435 SSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPV 514 (683)
Q Consensus 435 ~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~ 514 (683)
..+ ....+|+.|++. .|.++.++ ..+.++++
T Consensus 416 -----------------------------------------sIP----~l~~~L~~L~Ls---~NqLt~LP-~sl~~L~~ 446 (788)
T PRK15387 416 -----------------------------------------SLP----MLPSGLLSLSVY---RNQLTRLP-ESLIHLSS 446 (788)
T ss_pred -----------------------------------------CCC----cchhhhhhhhhc---cCcccccC-hHHhhccC
Confidence 000 012457777763 47776554 34778899
Q ss_pred cceeeecccCCC
Q 038791 515 LEEIRIKMEGDS 526 (683)
Q Consensus 515 L~~L~l~~~~~c 526 (683)
|+.|+++ +|
T Consensus 447 L~~LdLs---~N 455 (788)
T PRK15387 447 ETTVNLE---GN 455 (788)
T ss_pred CCeEECC---CC
Confidence 9999999 77
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.17 E-value=3.9e-06 Score=95.53 Aligned_cols=83 Identities=8% Similarity=0.013 Sum_probs=41.7
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcC
Q 038791 336 GGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVR 415 (683)
Q Consensus 336 ~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~ 415 (683)
++|+.|++++|. ++.. ...+ .++|+.|+|++|. ++.. ...+. +.|+.|++++|....-...++.....+
T Consensus 346 ~sL~~L~Ls~N~-L~~L-P~~l---p~~L~~LdLs~N~-Lt~L-P~~l~----~sL~~LdLs~N~L~~LP~sl~~~~~~~ 414 (754)
T PRK15370 346 PELQVLDVSKNQ-ITVL-PETL---PPTITTLDVSRNA-LTNL-PENLP----AALQIMQASRNNLVRLPESLPHFRGEG 414 (754)
T ss_pred CcccEEECCCCC-CCcC-Chhh---cCCcCEEECCCCc-CCCC-CHhHH----HHHHHHhhccCCcccCchhHHHHhhcC
Confidence 567777777654 4421 1111 2467777777765 4421 11111 346666776654432112233344445
Q ss_pred CCccEEEEeeecCC
Q 038791 416 DRIEKLHIDCVWDG 429 (683)
Q Consensus 416 ~~L~~L~L~c~~~~ 429 (683)
+++..|++..+.++
T Consensus 415 ~~l~~L~L~~Npls 428 (754)
T PRK15370 415 PQPTRIIVEYNPFS 428 (754)
T ss_pred CCccEEEeeCCCcc
Confidence 66777777655544
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.13 E-value=3.8e-06 Score=94.72 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=82.6
Q ss_pred CCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCC
Q 038791 203 PSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLL 282 (683)
Q Consensus 203 ~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L 282 (683)
.+|++|+++. ...++...+..++..+|.|++|.+.+ ..+....+..+..++|+|
T Consensus 122 ~nL~~LdI~G------~~~~s~~W~~kig~~LPsL~sL~i~~--------------------~~~~~~dF~~lc~sFpNL 175 (699)
T KOG3665|consen 122 QNLQHLDISG------SELFSNGWPKKIGTMLPSLRSLVISG--------------------RQFDNDDFSQLCASFPNL 175 (699)
T ss_pred HhhhhcCccc------cchhhccHHHHHhhhCcccceEEecC--------------------ceecchhHHHHhhccCcc
Confidence 4566666621 22344455555666666666666653 123333455556666666
Q ss_pred cEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHH----HHHH
Q 038791 283 EELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGL----VAIG 358 (683)
Q Consensus 283 ~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l----~~l~ 358 (683)
..||++++ +++. + .-.+++++|+.|.+.+..-. ....+..+-.+++|+.||++......+..+ .+-+
T Consensus 176 ~sLDIS~T-nI~n----l-~GIS~LknLq~L~mrnLe~e---~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~ 246 (699)
T KOG3665|consen 176 RSLDISGT-NISN----L-SGISRLKNLQVLSMRNLEFE---SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG 246 (699)
T ss_pred ceeecCCC-CccC----c-HHHhccccHHHHhccCCCCC---chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence 66666663 4443 2 12245666666666542211 112333444566666666665433222211 1122
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeec
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISC 398 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~ 398 (683)
..+|+|+.||.++.. +++..++.+...- |+|+.+.+-+
T Consensus 247 ~~LpeLrfLDcSgTd-i~~~~le~ll~sH-~~L~~i~~~~ 284 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTD-INEEILEELLNSH-PNLQQIAALD 284 (699)
T ss_pred ccCccccEEecCCcc-hhHHHHHHHHHhC-ccHhhhhhhh
Confidence 346777777777666 6666666666554 6666655443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.13 E-value=5.8e-07 Score=83.16 Aligned_cols=131 Identities=17% Similarity=0.133 Sum_probs=51.6
Q ss_pred CCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHH
Q 038791 278 GLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAI 357 (683)
Q Consensus 278 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l 357 (683)
++.++++|+|.+ +.++. ++.+...+.+|+.|+++++.- ..++.+..++.|+.|+++++. +++.. ..+
T Consensus 17 n~~~~~~L~L~~-n~I~~----Ie~L~~~l~~L~~L~Ls~N~I------~~l~~l~~L~~L~~L~L~~N~-I~~i~-~~l 83 (175)
T PF14580_consen 17 NPVKLRELNLRG-NQIST----IENLGATLDKLEVLDLSNNQI------TKLEGLPGLPRLKTLDLSNNR-ISSIS-EGL 83 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--------S--TT----TT--EEE--SS----S-C-HHH
T ss_pred cccccccccccc-ccccc----ccchhhhhcCCCEEECCCCCC------ccccCccChhhhhhcccCCCC-CCccc-cch
Confidence 456789999988 46654 445544678999999997432 244667788999999999975 66542 234
Q ss_pred HhcCCCCcEEEecCCCCCCHH-HHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 358 GRGCRRLIKFELEGCKNVTVD-GLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 358 ~~~~~~L~~L~L~~c~~it~~-~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
...+|+|+.|++++|. |.+. .+..+. .+ ++|+.|++.+|+-.....--..+...+|+|+.|+-.
T Consensus 84 ~~~lp~L~~L~L~~N~-I~~l~~l~~L~-~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNK-ISDLNELEPLS-SL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGG-G--TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCCc-CCChHHhHHHH-cC-CCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 3458999999999987 5542 234443 34 999999999998654332233456678999998754
No 31
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.13 E-value=2.1e-07 Score=66.60 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=31.8
Q ss_pred cCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhcccccc
Q 038791 5 TINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQR 43 (683)
Q Consensus 5 ~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~ 43 (683)
+|.+||+|++.+||+|| +.+|+.++++||| |++++...
T Consensus 2 ~~~~LP~~il~~Il~~l-~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYL-DPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHC-cHHHHHHHHHHhhHHHHHHcCC
Confidence 46789999999999999 9999999999999 99998543
No 32
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.05 E-value=1.7e-06 Score=59.50 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=31.5
Q ss_pred CcHHHHHHHHhcCCCCCccchhhhhhh-hhcccccc
Q 038791 9 LPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQR 43 (683)
Q Consensus 9 LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~ 43 (683)
||+|++.+||.|| +.+|+.++++||| |+.++...
T Consensus 1 lP~~ll~~I~~~l-~~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILSKL-PPKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCh
Confidence 7999999999999 8899999999999 99999543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.99 E-value=2.6e-06 Score=78.88 Aligned_cols=37 Identities=32% Similarity=0.249 Sum_probs=11.7
Q ss_pred CCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEe
Q 038791 278 GLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKL 315 (683)
Q Consensus 278 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L 315 (683)
.+|+|+.|++.+ +.++....--..++..+|+|+.|+-
T Consensus 111 ~l~~L~~L~L~~-NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 111 SLPKLRVLSLEG-NPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp G-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred cCCCcceeeccC-CcccchhhHHHHHHHHcChhheeCC
Confidence 345555555544 2232221111223344555555543
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.95 E-value=1.3e-05 Score=90.31 Aligned_cols=162 Identities=20% Similarity=0.196 Sum_probs=96.7
Q ss_pred CCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCC
Q 038791 174 ANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERG 253 (683)
Q Consensus 174 ~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~ 253 (683)
.+|++|++++ -..+...-...+...+|+|++|.+... .+....+..+..+.|+|..||++++.
T Consensus 122 ~nL~~LdI~G---~~~~s~~W~~kig~~LPsL~sL~i~~~-------~~~~~dF~~lc~sFpNL~sLDIS~Tn------- 184 (699)
T KOG3665|consen 122 QNLQHLDISG---SELFSNGWPKKIGTMLPSLRSLVISGR-------QFDNDDFSQLCASFPNLRSLDISGTN------- 184 (699)
T ss_pred HhhhhcCccc---cchhhccHHHHHhhhCcccceEEecCc-------eecchhHHHHhhccCccceeecCCCC-------
Confidence 3677777774 333444455566666777777777321 33333466666777788888877642
Q ss_pred CCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCccccccc--ccccccc
Q 038791 254 DPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLA--IGWQLDG 331 (683)
Q Consensus 254 ~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~--~~~~~~~ 331 (683)
+++- ..++++++|+.|.+.+- .+... ..+..+ -++++|+.|+++.-...... ...-++.
T Consensus 185 -------------I~nl---~GIS~LknLq~L~mrnL-e~e~~-~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec 245 (699)
T KOG3665|consen 185 -------------ISNL---SGISRLKNLQVLSMRNL-EFESY-QDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLEC 245 (699)
T ss_pred -------------ccCc---HHHhccccHHHHhccCC-CCCch-hhHHHH-hcccCCCeeeccccccccchHHHHHHHHh
Confidence 2221 22456777777777552 22221 114444 34778888888763332111 0011111
Q ss_pred cccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 038791 332 VSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGC 372 (683)
Q Consensus 332 l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c 372 (683)
-..+|+|+.|+.++.. +++..+..+...-|+|+.+.+-+|
T Consensus 246 ~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTD-INEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred cccCccccEEecCCcc-hhHHHHHHHHHhCccHhhhhhhhh
Confidence 1257899999999864 899999998888888888776543
No 35
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.93 E-value=0.00015 Score=69.54 Aligned_cols=38 Identities=26% Similarity=0.212 Sum_probs=18.4
Q ss_pred CCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEec
Q 038791 144 CECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLL 182 (683)
Q Consensus 144 ~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~ 182 (683)
+..+++++||+|++.++.. .++...-..-.+|+..+++
T Consensus 29 ~d~~~evdLSGNtigtEA~-e~l~~~ia~~~~L~vvnfs 66 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAM-EELCNVIANVRNLRVVNFS 66 (388)
T ss_pred hcceeEEeccCCcccHHHH-HHHHHHHhhhcceeEeehh
Confidence 5566666666666544332 2233222233355555555
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.91 E-value=0.00023 Score=68.42 Aligned_cols=104 Identities=24% Similarity=0.295 Sum_probs=60.7
Q ss_pred CChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhC---CCCceEEeceecCCCCccccCHHHH-------HH
Q 038791 160 EDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAAC---PSLNKLLVACTFDPRYIGFVNDETL-------SA 229 (683)
Q Consensus 160 ~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~---~~L~~L~L~c~~~~~~~~~l~~~~l-------~~ 229 (683)
++....+..+. ....++.++|++|. |..++...+.... .+|+..+++.. |.+...++.. ++
T Consensus 17 eDvk~v~eel~-~~d~~~evdLSGNt----igtEA~e~l~~~ia~~~~L~vvnfsd~----ftgr~kde~~~~L~~Ll~a 87 (388)
T COG5238 17 EDVKGVVEELE-MMDELVEVDLSGNT----IGTEAMEELCNVIANVRNLRVVNFSDA----FTGRDKDELYSNLVMLLKA 87 (388)
T ss_pred chhhHHHHHHH-hhcceeEEeccCCc----ccHHHHHHHHHHHhhhcceeEeehhhh----hhcccHHHHHHHHHHHHHH
Confidence 34444444332 24589999999876 7777777665444 55555555322 2223334332 23
Q ss_pred HHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccc
Q 038791 230 IATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVC 290 (683)
Q Consensus 230 l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c 290 (683)
+ ..||+|+..++++.. +| .-+...+..++++-..|++|.+++|
T Consensus 88 L-lkcp~l~~v~LSDNA-----------fg------~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 88 L-LKCPRLQKVDLSDNA-----------FG------SEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred H-hcCCcceeeeccccc-----------cC------cccchHHHHHHhcCCCceeEEeecC
Confidence 3 378999999988631 01 1112345556667788888888875
No 37
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=1e-05 Score=74.33 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=67.5
Q ss_pred cccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccC
Q 038791 326 GWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLG 403 (683)
Q Consensus 326 ~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~ 403 (683)
.++++.+..++.++.|.+.+|..+.|.++..++...++|+.|+|++|+.||+.|+..+.+. ++|+.|.|.+-+.+.
T Consensus 115 ~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l--knLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 115 YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL--KNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh--hhhHHHHhcCchhhh
Confidence 4677778888999999999999999999999999889999999999999999999999887 999999998766654
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.77 E-value=3.2e-05 Score=89.61 Aligned_cols=109 Identities=24% Similarity=0.234 Sum_probs=59.4
Q ss_pred ccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCC
Q 038791 112 PQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFK 191 (683)
Q Consensus 112 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~ 191 (683)
..+|+|++|-+.+.... .......++..+|.|+.|||++|.- -..+|..++.+- +|++|+|+++. +.
T Consensus 542 ~~~~~L~tLll~~n~~~----l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li----~LryL~L~~t~----I~ 608 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDW----LLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELV----HLRYLDLSDTG----IS 608 (889)
T ss_pred CCCCccceEEEeecchh----hhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhh----hhhcccccCCC----cc
Confidence 44566666666543210 0112233466777777777777654 245666666666 77777777443 33
Q ss_pred HHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeec
Q 038791 192 AQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLV 243 (683)
Q Consensus 192 ~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~ 243 (683)
.++.-+.++..|.+|++... ... ..+..+...+++|++|.+.
T Consensus 609 --~LP~~l~~Lk~L~~Lnl~~~------~~l--~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 609 --HLPSGLGNLKKLIYLNLEVT------GRL--ESIPGILLELQSLRVLRLP 650 (889)
T ss_pred --ccchHHHHHHhhheeccccc------ccc--ccccchhhhcccccEEEee
Confidence 25555566667777777311 000 1112233346777777775
No 39
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.74 E-value=6e-05 Score=86.03 Aligned_cols=118 Identities=11% Similarity=0.086 Sum_probs=71.7
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
.+...|++++ ..++.. +..+ .++|+.|+++++. ++ ..+..+ .++|+.|++++|. ++.. ...+
T Consensus 178 ~~~~~L~L~~-~~LtsL----P~~I--p~~L~~L~Ls~N~-Lt----sLP~~l--~~nL~~L~Ls~N~-LtsL-P~~l-- 239 (754)
T PRK15370 178 NNKTELRLKI-LGLTTI----PACI--PEQITTLILDNNE-LK----SLPENL--QGNIKTLYANSNQ-LTSI-PATL-- 239 (754)
T ss_pred cCceEEEeCC-CCcCcC----Cccc--ccCCcEEEecCCC-CC----cCChhh--ccCCCEEECCCCc-cccC-Chhh--
Confidence 5678899987 355542 2211 3579999998742 22 222222 3689999999875 6531 1112
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecC
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWD 428 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~ 428 (683)
.++|+.|+|++|. ++.. ...+ . ++|+.|++++| .+... +. ..+++|+.|++++|.+
T Consensus 240 -~~~L~~L~Ls~N~-L~~L-P~~l---~-s~L~~L~Ls~N-~L~~L---P~--~l~~sL~~L~Ls~N~L 295 (754)
T PRK15370 240 -PDTIQEMELSINR-ITEL-PERL---P-SALQSLDLFHN-KISCL---PE--NLPEELRYLSVYDNSI 295 (754)
T ss_pred -hccccEEECcCCc-cCcC-ChhH---h-CCCCEEECcCC-ccCcc---cc--ccCCCCcEEECCCCcc
Confidence 2479999999987 5532 1122 2 67999999855 44332 21 1236899999985544
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.70 E-value=5.3e-06 Score=83.42 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=55.0
Q ss_pred ccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceee
Q 038791 483 KTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYA 562 (683)
Q Consensus 483 ~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~ 562 (683)
..+++|+.|+| .+|.++.+....+.+...+++|.+. +++ ...+.-..+.++..|+.|+|..|+++-.+
T Consensus 271 ~~L~~L~~lnl---snN~i~~i~~~aFe~~a~l~eL~L~---~N~------l~~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 271 KKLPNLRKLNL---SNNKITRIEDGAFEGAAELQELYLT---RNK------LEFVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred hhcccceEecc---CCCccchhhhhhhcchhhhhhhhcC---cch------HHHHHHHhhhccccceeeeecCCeeEEEe
Confidence 45889999997 4699999988889999999999998 662 11333566888999999999999988765
Q ss_pred c
Q 038791 563 L 563 (683)
Q Consensus 563 ~ 563 (683)
+
T Consensus 339 ~ 339 (498)
T KOG4237|consen 339 P 339 (498)
T ss_pred c
Confidence 3
No 41
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.69 E-value=1.7e-05 Score=70.63 Aligned_cols=121 Identities=25% Similarity=0.382 Sum_probs=86.4
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
+.+|+.|.++. +.++.++. .++.+++|+.|++. -++. ...|.+++.+|.|+.|++..|++... .
T Consensus 55 l~nlevln~~n---nqie~lp~-~issl~klr~lnvg---mnrl-------~~lprgfgs~p~levldltynnl~e~--~ 118 (264)
T KOG0617|consen 55 LKNLEVLNLSN---NQIEELPT-SISSLPKLRILNVG---MNRL-------NILPRGFGSFPALEVLDLTYNNLNEN--S 118 (264)
T ss_pred hhhhhhhhccc---chhhhcCh-hhhhchhhhheecc---hhhh-------hcCccccCCCchhhhhhccccccccc--c
Confidence 67889998754 77766654 47889999999988 5532 22367788999999999988877654 3
Q ss_pred cCCCCCCchhhHHHhhcc---------ccee-eeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 565 APGGETDLTLWDRFFFNG---------IGNL-RLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 565 ~p~~~~~l~~l~~~~l~~---------~~~l-~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
.|..+..++.+..+|++. +++| .|+-|.. ++.+. .++|.+ ++.++.||+|.|.|++-
T Consensus 119 lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~l-----rdndl--l~lpke--ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 119 LPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSL-----RDNDL--LSLPKE--IGDLTRLRELHIQGNRL 185 (264)
T ss_pred CCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEee-----ccCch--hhCcHH--HHHHHHHHHHhccccee
Confidence 477788888888888864 4555 4444422 12222 356877 89999999999999863
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.54 E-value=5.8e-05 Score=73.29 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCCCCCCcceeeecccCCCCCCCCCCCccch-hhhhccCcccccccccccccce
Q 038791 508 GLDDCPVLEEIRIKMEGDSRGRQKPSDRAFG-LSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 508 ~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+++.+-+|..|+++ +++- .... ...++++|-|+.+.|-.|.+.+
T Consensus 369 GL~KLYSLvnLDl~---~N~I------e~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 369 GLRKLYSLVNLDLS---SNQI------EELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhHhhhhheecccc---ccch------hhHHHhcccccccHHHHHhhcCCCccc
Confidence 34445555666666 4421 0111 4455666666666665555443
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=8.9e-05 Score=72.06 Aligned_cols=200 Identities=16% Similarity=0.111 Sum_probs=92.2
Q ss_pred cccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEecee
Q 038791 134 GAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACT 213 (683)
Q Consensus 134 ~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~ 213 (683)
.+.+..+...+..+++|||.+|.+. ++.. +..+-.+.|.|+.|+|+.|+...-|. .+.....+|+.|-|+.
T Consensus 60 ~gd~~~~~~~~~~v~elDL~~N~iS--dWse-I~~ile~lP~l~~LNls~N~L~s~I~-----~lp~p~~nl~~lVLNg- 130 (418)
T KOG2982|consen 60 EGDVMLFGSSVTDVKELDLTGNLIS--DWSE-IGAILEQLPALTTLNLSCNSLSSDIK-----SLPLPLKNLRVLVLNG- 130 (418)
T ss_pred chhHHHHHHHhhhhhhhhcccchhc--cHHH-HHHHHhcCccceEeeccCCcCCCccc-----cCcccccceEEEEEcC-
Confidence 3444445556666677777666542 1211 12222233377777776554222121 1111234666666642
Q ss_pred cCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCc
Q 038791 214 FDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNV 293 (683)
Q Consensus 214 ~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l 293 (683)
+.++..........+|.+++|++++..- +. ..+.++.... .-+.+..|+...|...
T Consensus 131 ------T~L~w~~~~s~l~~lP~vtelHmS~N~~----rq-----------~n~Dd~c~e~---~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 131 ------TGLSWTQSTSSLDDLPKVTELHMSDNSL----RQ-----------LNLDDNCIED---WSTEVLTLHQLPCLEQ 186 (418)
T ss_pred ------CCCChhhhhhhhhcchhhhhhhhccchh----hh-----------hccccccccc---cchhhhhhhcCCcHHH
Confidence 2555555555556667777776654200 00 0011111111 1233444444444211
Q ss_pred CCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCH-HHHHHHHhcCCCCcEEEecCC
Q 038791 294 RDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSD-MGLVAIGRGCRRLIKFELEGC 372 (683)
Q Consensus 294 ~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~-~~l~~l~~~~~~L~~L~L~~c 372 (683)
.......+.+.+|++..+-+..|+--+. ..-.+....|.+-.|.++.+. +.+ +.+.++.+ +|+|..|.++.+
T Consensus 187 --~w~~~~~l~r~Fpnv~sv~v~e~PlK~~---s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln~-f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 187 --LWLNKNKLSRIFPNVNSVFVCEGPLKTE---SSEKGSEPFPSLSCLNLGANN-IDSWASVDALNG-FPQLVDLRVSEN 259 (418)
T ss_pred --HHHHHHhHHhhcccchheeeecCcccch---hhcccCCCCCcchhhhhcccc-cccHHHHHHHcC-CchhheeeccCC
Confidence 1111334455677777777766533211 112223344555566666544 333 33444443 666777766666
Q ss_pred C
Q 038791 373 K 373 (683)
Q Consensus 373 ~ 373 (683)
+
T Consensus 260 P 260 (418)
T KOG2982|consen 260 P 260 (418)
T ss_pred c
Confidence 5
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=0.00013 Score=79.11 Aligned_cols=61 Identities=20% Similarity=0.324 Sum_probs=41.3
Q ss_pred cCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccch-hhhhccCcccccccccccccce
Q 038791 484 TWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFG-LSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 484 ~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~g 560 (683)
.|++|++|+|++ |.+..++-.+-.+|. |+.|.|+ ++ ... +..+.++.+|+.||++.|=+.+
T Consensus 207 ~l~~LkhLDlsy---N~L~~vp~l~~~gc~-L~~L~lr---nN---------~l~tL~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 207 RLPKLKHLDLSY---NCLRHVPQLSMVGCK-LQLLNLR---NN---------ALTTLRGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred hccccccccccc---chhccccccchhhhh-heeeeec---cc---------HHHhhhhHHhhhhhhccchhHhhhhc
Confidence 367788888877 666556665566777 8888888 66 332 5566677777777776665444
No 45
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=4.9e-05 Score=73.10 Aligned_cols=91 Identities=21% Similarity=0.371 Sum_probs=48.2
Q ss_pred hccCcccccccccccccceeecccCCCCCCchhhHHHhhccccee-eeccccCCCCCCcCccCcccCcccchHHHHhhhh
Q 038791 542 LTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNL-RLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTL 620 (683)
Q Consensus 542 l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~~l-~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L 620 (683)
..++|.|+.|.|+-|.++.. ..+.+++.|+.+||.. ..+ ++.||.| +.++++|
T Consensus 37 c~kMp~lEVLsLSvNkIssL-----~pl~rCtrLkElYLRk-N~I~sldEL~Y--------------------LknlpsL 90 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL-----APLQRCTRLKELYLRK-NCIESLDELEY--------------------LKNLPSL 90 (388)
T ss_pred HHhcccceeEEeeccccccc-----hhHHHHHHHHHHHHHh-cccccHHHHHH--------------------HhcCchh
Confidence 34455555555555554442 2344555555555544 111 3444433 5566666
Q ss_pred hhhhhccch------hhHHHHHHhcCCccccc------------ccccccCCCCCCCC
Q 038791 621 RKLIIHGTA------HEHFMMFFTRMPNVRDV------------QLREDYYPAPADDS 660 (683)
Q Consensus 621 ~~l~~~~~~------~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 660 (683)
|.|+|..|. |.-=+..|-.+|||.++ -||++|| ||.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~ALr~g~~--PE~~~ 146 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEALRDGIY--PECDM 146 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHHHhcCCC--Cchhh
Confidence 666666553 12233334456666655 3899999 67665
No 46
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.39 E-value=2.6e-05 Score=78.58 Aligned_cols=107 Identities=16% Similarity=0.083 Sum_probs=51.9
Q ss_pred CCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhc
Q 038791 281 LLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRG 360 (683)
Q Consensus 281 ~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~ 360 (683)
.-.+++|.. +.|+.-+ +..++.+++|+.|+|++ +.+..-.+.++..+++|.+|.+.+.++|++..-..+..
T Consensus 68 ~tveirLdq-N~I~~iP---~~aF~~l~~LRrLdLS~----N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g- 138 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIP---PGAFKTLHRLRRLDLSK----NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG- 138 (498)
T ss_pred cceEEEecc-CCcccCC---hhhccchhhhceecccc----cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-
Confidence 455566655 4555432 23335566666666665 33333344455555555555555544455544333333
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecc
Q 038791 361 CRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCC 399 (683)
Q Consensus 361 ~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c 399 (683)
+..|+.|.+.-|+ ++-.-...+... ++|..|.+.++
T Consensus 139 L~slqrLllNan~-i~Cir~~al~dL--~~l~lLslyDn 174 (498)
T KOG4237|consen 139 LSSLQRLLLNANH-INCIRQDALRDL--PSLSLLSLYDN 174 (498)
T ss_pred HHHHHHHhcChhh-hcchhHHHHHHh--hhcchhcccch
Confidence 4555555554444 333322222222 55555555543
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.38 E-value=1.6e-05 Score=85.74 Aligned_cols=207 Identities=21% Similarity=0.175 Sum_probs=108.8
Q ss_pred HHHHHHHhccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEecc
Q 038791 104 TVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLT 183 (683)
Q Consensus 104 ~~~L~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 183 (683)
...|+.+.+-.++++.|++...-... ..+ +-.+..+++|+.|.+.+|.+.+-.. +..+- ..|++|--.+
T Consensus 73 l~qLq~i~d~lqkt~~lkl~~~pa~~---pt~--pi~ifpF~sLr~LElrg~~L~~~~G---L~~lr---~qLe~LIC~~ 141 (1096)
T KOG1859|consen 73 LEQLQRILDFLQKTKVLKLLPSPARD---PTE--PISIFPFRSLRVLELRGCDLSTAKG---LQELR---HQLEKLICHN 141 (1096)
T ss_pred HHHHHHHHHHHhhheeeeecccCCCC---CCC--CceeccccceeeEEecCcchhhhhh---hHHHH---Hhhhhhhhhc
Confidence 45677777888888888886433221 111 3334567889999999997744222 22222 2666665441
Q ss_pred CCCCCCCCHHHHHHHHhhC-----CCCceEEe---ceecCCCCcccc--CHHHHHHHHhcCCCCcEEeecCCCCCCCCCC
Q 038791 184 TSFTEGFKAQEIREITAAC-----PSLNKLLV---ACTFDPRYIGFV--NDETLSAIATNCPKLTLLHLVDTSSLANERG 253 (683)
Q Consensus 184 ~~~c~~i~~~~l~~l~~~~-----~~L~~L~L---~c~~~~~~~~~l--~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~ 253 (683)
+..++..++..| ..+....| +|. +|.+ -|+.+ +-+|.|+.|+|++
T Consensus 142 -------Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fs-----yN~L~~mD~SL----qll~ale~LnLsh--------- 196 (1096)
T KOG1859|consen 142 -------SLDALRHVFASCGGDISNSPVWNKLATASFS-----YNRLVLMDESL----QLLPALESLNLSH--------- 196 (1096)
T ss_pred -------cHHHHHHHHHHhccccccchhhhhHhhhhcc-----hhhHHhHHHHH----HHHHHhhhhccch---------
Confidence 234455555544 12222111 221 1111 12222 2346677777775
Q ss_pred CCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccc
Q 038791 254 DPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVS 333 (683)
Q Consensus 254 ~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~ 333 (683)
|.+++.. .+..|+.|++|||++ +.+.- ++.+...-.+|+.|.+.+ +.. ..+.++.
T Consensus 197 -----------Nk~~~v~---~Lr~l~~LkhLDlsy-N~L~~----vp~l~~~gc~L~~L~lrn----N~l--~tL~gie 251 (1096)
T KOG1859|consen 197 -----------NKFTKVD---NLRRLPKLKHLDLSY-NCLRH----VPQLSMVGCKLQLLNLRN----NAL--TTLRGIE 251 (1096)
T ss_pred -----------hhhhhhH---HHHhccccccccccc-chhcc----ccccchhhhhheeeeecc----cHH--HhhhhHH
Confidence 3343322 345677888888877 55543 222322222377777765 221 3345566
Q ss_pred cCCCCcEEEeccCCCCCHH-HHHHHHhcCCCCcEEEecCCC
Q 038791 334 LCGGLESLSIKNCGDLSDM-GLVAIGRGCRRLIKFELEGCK 373 (683)
Q Consensus 334 ~~~~L~~L~L~~~~~lt~~-~l~~l~~~~~~L~~L~L~~c~ 373 (683)
++.+|+.|+++++- +.+. .+..+.. +..|+.|.|.||+
T Consensus 252 ~LksL~~LDlsyNl-l~~hseL~pLws-Ls~L~~L~LeGNP 290 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNL-LSEHSELEPLWS-LSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhhccchhHhh-hhcchhhhHHHH-HHHHHHHhhcCCc
Confidence 77777777777653 3322 2222222 4457777777766
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.36 E-value=6.7e-05 Score=66.94 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=91.3
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccch--hhhhccCcccccccccccccceee
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFG--LSCLTRYPQLTKLRLEFGETIGYA 562 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~g~~ 562 (683)
+.+.+.|.|+. +.++-++ ..+..+.+|+.|+++ ++ .+. |..++.+++|+.|++..|.+.
T Consensus 32 ~s~ITrLtLSH---NKl~~vp-pnia~l~nlevln~~---nn---------qie~lp~~issl~klr~lnvgmnrl~--- 92 (264)
T KOG0617|consen 32 MSNITRLTLSH---NKLTVVP-PNIAELKNLEVLNLS---NN---------QIEELPTSISSLPKLRILNVGMNRLN--- 92 (264)
T ss_pred hhhhhhhhccc---CceeecC-CcHHHhhhhhhhhcc---cc---------hhhhcChhhhhchhhhheecchhhhh---
Confidence 45666666644 5654443 356778899999999 66 333 667889999999999988766
Q ss_pred cccCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchhhHHHHHHhcCCc
Q 038791 563 LTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPN 642 (683)
Q Consensus 563 ~~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~ 642 (683)
..|.+++.++.+|-+++.. .|.-.-++|+. +..+++||.|++..+..|-..-=++++.+
T Consensus 93 -~lprgfgs~p~levldlty------------------nnl~e~~lpgn--ff~m~tlralyl~dndfe~lp~dvg~lt~ 151 (264)
T KOG0617|consen 93 -ILPRGFGSFPALEVLDLTY------------------NNLNENSLPGN--FFYMTTLRALYLGDNDFEILPPDVGKLTN 151 (264)
T ss_pred -cCccccCCCchhhhhhccc------------------cccccccCCcc--hhHHHHHHHHHhcCCCcccCChhhhhhcc
Confidence 4588888887776655432 12223356776 77789999999999988766666778888
Q ss_pred cccccccc
Q 038791 643 VRDVQLRE 650 (683)
Q Consensus 643 ~~~~~~~~ 650 (683)
|+-+-+|+
T Consensus 152 lqil~lrd 159 (264)
T KOG0617|consen 152 LQILSLRD 159 (264)
T ss_pred eeEEeecc
Confidence 88888885
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0002 Score=69.64 Aligned_cols=140 Identities=11% Similarity=0.120 Sum_probs=94.6
Q ss_pred HHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCccccccccccccccc-ccCCCCcEEEeccCCCCC
Q 038791 272 LIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGV-SLCGGLESLSIKNCGDLS 350 (683)
Q Consensus 272 l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l-~~~~~L~~L~L~~~~~lt 350 (683)
...+...+..+++|+|.+ +.+++... +..+..++|.|+.|+++.. .++ ..+..+ ....+|+.|.+.+.. ++
T Consensus 63 ~~~~~~~~~~v~elDL~~-N~iSdWse-I~~ile~lP~l~~LNls~N-~L~----s~I~~lp~p~~nl~~lVLNgT~-L~ 134 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTG-NLISDWSE-IGAILEQLPALTTLNLSCN-SLS----SDIKSLPLPLKNLRVLVLNGTG-LS 134 (418)
T ss_pred HHHHHHHhhhhhhhhccc-chhccHHH-HHHHHhcCccceEeeccCC-cCC----CccccCcccccceEEEEEcCCC-CC
Confidence 444556788999999998 78887654 7788899999999999852 222 223334 366799999999865 88
Q ss_pred HHHHHHHHhcCCCCcEEEecCCC----CCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 351 DMGLVAIGRGCRRLIKFELEGCK----NVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 351 ~~~l~~l~~~~~~L~~L~L~~c~----~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
......+....|.++.|.++.|. ++.+...+.+. +.++.|....|.... -.....+....|++..+.+.
T Consensus 135 w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s----~~v~tlh~~~c~~~~-w~~~~~l~r~Fpnv~sv~v~ 207 (418)
T KOG2982|consen 135 WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS----TEVLTLHQLPCLEQL-WLNKNKLSRIFPNVNSVFVC 207 (418)
T ss_pred hhhhhhhhhcchhhhhhhhccchhhhhccccccccccc----hhhhhhhcCCcHHHH-HHHHHhHHhhcccchheeee
Confidence 88888888889999999888773 23333333321 556677776665431 11123334445677766665
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.19 E-value=0.00027 Score=82.18 Aligned_cols=110 Identities=24% Similarity=0.176 Sum_probs=77.0
Q ss_pred hccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCC
Q 038791 111 LPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGF 190 (683)
Q Consensus 111 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i 190 (683)
..++|.|+.|+|+++. ....++..++.+-+|+.|++++..+ ..+|..++.+. .|.+|++..+.....
T Consensus 567 f~~m~~LrVLDLs~~~------~l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l~~Lk----~L~~Lnl~~~~~l~~- 633 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNS------SLSKLPSSIGELVHLRYLDLSDTGI--SHLPSGLGNLK----KLIYLNLEVTGRLES- 633 (889)
T ss_pred HhhCcceEEEECCCCC------ccCcCChHHhhhhhhhcccccCCCc--cccchHHHHHH----hhheecccccccccc-
Confidence 5678999999999754 4667888899999999999999876 37888888886 999999996542112
Q ss_pred CHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeec
Q 038791 191 KAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLV 243 (683)
Q Consensus 191 ~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~ 243 (683)
+..+...+++|++|.+.+. ....+...+..+ .++.+|+.+.+.
T Consensus 634 ----~~~i~~~L~~Lr~L~l~~s-----~~~~~~~~l~el-~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 634 ----IPGILLELQSLRVLRLPRS-----ALSNDKLLLKEL-ENLEHLENLSIT 676 (889)
T ss_pred ----ccchhhhcccccEEEeecc-----ccccchhhHHhh-hcccchhhheee
Confidence 2445566899999999322 112333333333 355555555553
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.04 E-value=0.0005 Score=51.80 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=44.9
Q ss_pred CCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccc
Q 038791 486 KGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGE 557 (683)
Q Consensus 486 ~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 557 (683)
++|+.|+++ .+.++.++...+.++++|++|+++ +|.- ..+.+..+.++++|+.|+++.|.
T Consensus 1 p~L~~L~l~---~n~l~~i~~~~f~~l~~L~~L~l~---~N~l------~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLS---NNKLTEIPPDSFSNLPNLETLDLS---NNNL------TSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEET---SSTESEECTTTTTTGTTESEEEET---SSSE------SEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECC---CCCCCccCHHHHcCCCCCCEeEcc---CCcc------CccCHHHHcCCCCCCEEeCcCCc
Confidence 467888863 467777777778889999999998 7731 13446678888899988888775
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.01 E-value=0.00038 Score=67.79 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=77.2
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
...|++|+|++ +.++. +.....-.|.++.|++++..- .....++.+++|++|+++++. ++. +..+-
T Consensus 283 Wq~LtelDLS~-N~I~~----iDESvKL~Pkir~L~lS~N~i------~~v~nLa~L~~L~~LDLS~N~-Ls~--~~Gwh 348 (490)
T KOG1259|consen 283 WQELTELDLSG-NLITQ----IDESVKLAPKLRRLILSQNRI------RTVQNLAELPQLQLLDLSGNL-LAE--CVGWH 348 (490)
T ss_pred Hhhhhhccccc-cchhh----hhhhhhhccceeEEeccccce------eeehhhhhcccceEeecccch-hHh--hhhhH
Confidence 45688899988 56654 334445578999999986221 233456778889999999864 332 23333
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeee
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCV 426 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~ 426 (683)
..+.+.++|.+++|. +.+ +..+.+. -+|..||+++++.- ....+.. ++..|.|+.|.+.++
T Consensus 349 ~KLGNIKtL~La~N~-iE~--LSGL~KL--YSLvnLDl~~N~Ie-~ldeV~~-IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNK-IET--LSGLRKL--YSLVNLDLSSNQIE-ELDEVNH-IGNLPCLETLRLTGN 409 (490)
T ss_pred hhhcCEeeeehhhhh-Hhh--hhhhHhh--hhheeccccccchh-hHHHhcc-cccccHHHHHhhcCC
Confidence 446788889888887 322 3333333 57888888876432 1111111 224567777766543
No 53
>PLN03150 hypothetical protein; Provisional
Probab=96.85 E-value=0.0014 Score=74.32 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=49.0
Q ss_pred CcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhccc
Q 038791 310 LKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRE 389 (683)
Q Consensus 310 L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~ 389 (683)
++.|+|.++ ...+..+..++.+++|+.|+|+++. +++.....+.. +++|+.|+|++|. +++.....+... +
T Consensus 420 v~~L~L~~n----~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~~-l~~L~~LdLs~N~-lsg~iP~~l~~L--~ 490 (623)
T PLN03150 420 IDGLGLDNQ----GLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGS-ITSLEVLDLSYNS-FNGSIPESLGQL--T 490 (623)
T ss_pred EEEEECCCC----CccccCCHHHhCCCCCCEEECCCCc-ccCcCChHHhC-CCCCCEEECCCCC-CCCCCchHHhcC--C
Confidence 556666652 2223445556667777777777654 55444444444 6777777777766 555444444433 6
Q ss_pred CccEEEeeccccc
Q 038791 390 TLVEMKISCCKQL 402 (683)
Q Consensus 390 ~L~~L~l~~c~~l 402 (683)
+|+.|++++|...
T Consensus 491 ~L~~L~Ls~N~l~ 503 (623)
T PLN03150 491 SLRILNLNGNSLS 503 (623)
T ss_pred CCCEEECcCCccc
Confidence 7777777766543
No 54
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.0015 Score=60.47 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=11.9
Q ss_pred ccCHHHHHHHHhcCCCCcEEeecCC
Q 038791 221 FVNDETLSAIATNCPKLTLLHLVDT 245 (683)
Q Consensus 221 ~l~~~~l~~l~~~~~~L~~L~L~~c 245 (683)
.+.|.+++.+..-.|+|+.|+|++|
T Consensus 137 ~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 137 YFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred chhhHHHHHhcccccchheeeccCC
Confidence 4444444444444444444444444
No 55
>PLN03150 hypothetical protein; Provisional
Probab=96.72 E-value=0.00063 Score=77.13 Aligned_cols=65 Identities=15% Similarity=0.087 Sum_probs=35.2
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccccccccee
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGY 561 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~ 561 (683)
+++|+.|+|+ +|.+++..+..+.++++|+.|+++ +|... ...|..++++++|+.|+|+.|.+.|.
T Consensus 441 L~~L~~L~Ls---~N~l~g~iP~~~~~l~~L~~LdLs---~N~ls------g~iP~~l~~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 441 LRHLQSINLS---GNSIRGNIPPSLGSITSLEVLDLS---YNSFN------GSIPESLGQLTSLRILNLNGNSLSGR 505 (623)
T ss_pred CCCCCEEECC---CCcccCcCChHHhCCCCCCEEECC---CCCCC------CCCchHHhcCCCCCEEECcCCccccc
Confidence 4566666653 355544444445666666666666 55210 11144566666666666666666653
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.46 E-value=0.00082 Score=50.61 Aligned_cols=59 Identities=24% Similarity=0.175 Sum_probs=25.7
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccC
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNC 346 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~ 346 (683)
|+|++|++++| +++.-. ......+++|++|+++++. ........+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~---~~~f~~l~~L~~L~l~~N~----l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIP---PDSFSNLPNLETLDLSNNN----LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEEC---TTTTTTGTTESEEEETSSS----ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccC---HHHHcCCCCCCEeEccCCc----cCccCHHHHcCCCCCCEEeCcCC
Confidence 35556666553 343211 1222445555555555421 11122233445555555555543
No 57
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.35 E-value=0.0034 Score=37.93 Aligned_cols=24 Identities=42% Similarity=0.942 Sum_probs=13.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHH
Q 038791 361 CRRLIKFELEGCKNVTVDGLRTMA 384 (683)
Q Consensus 361 ~~~L~~L~L~~c~~it~~~l~~l~ 384 (683)
|++|+.|+|++|.+|||.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 455555555555555555555543
No 58
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.00 E-value=0.0026 Score=69.03 Aligned_cols=204 Identities=21% Similarity=0.199 Sum_probs=97.9
Q ss_pred CccEEEeccCCCCCCCCHHHHHH---HHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCC----CCcEEeecCCCC
Q 038791 175 NLTCLNLLTTSFTEGFKAQEIRE---ITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCP----KLTLLHLVDTSS 247 (683)
Q Consensus 175 ~L~~L~L~~~~~c~~i~~~~l~~---l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~----~L~~L~L~~c~~ 247 (683)
.+..|.|.+|. +.+.+... .....+.|+.|+++ .+.+++.+...+....+ .|+.|++..|
T Consensus 88 ~l~~L~L~~~~----l~~~~~~~l~~~l~t~~~L~~L~l~-------~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-- 154 (478)
T KOG4308|consen 88 SLLHLSLANNR----LGDRGAEELAQALKTLPTLGQLDLS-------GNNLGDEGARLLCEGLRLPQCLLQTLELVSC-- 154 (478)
T ss_pred hHHHhhhhhCc----cccchHHHHHHHhcccccHhHhhcc-------cCCCccHhHHHHHhhcccchHHHHHHHhhcc--
Confidence 37778888654 33434443 34455778888883 24667777777764443 3455666554
Q ss_pred CCCCCCCCCCCCCccCCCCcCHHH---HHHHHhCCCCCcEEEeccccCcCCChh-HHHHHHhcCCCCcEEEecCcccccc
Q 038791 248 LANERGDPDSDGFTAEDASVSREG---LIQLFSGLPLLEELVLDVCKNVRDSGP-VLEVLKSKCSSLKVLKLGQFHGVCL 323 (683)
Q Consensus 248 l~~~~~~~~~~g~~~~~~~lt~~~---l~~l~~~~~~L~~L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~L~~c~~l~~ 323 (683)
.++..+ +...+.....++.++++.+. +...+. .+......
T Consensus 155 ------------------~l~~~g~~~l~~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~----------------- 198 (478)
T KOG4308|consen 155 ------------------SLTSEGAAPLAAVLEKNEHLTELDLSLNG-LIELGLLVLSQALES----------------- 198 (478)
T ss_pred ------------------cccccchHHHHHHHhcccchhHHHHHhcc-cchhhhHHHhhhhhh-----------------
Confidence 233222 33333345667777776643 322221 11111111
Q ss_pred cccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcC---CC-CcEEEecCCCCCCHHHHHHHHHhc---ccCccEEEe
Q 038791 324 AIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGC---RR-LIKFELEGCKNVTVDGLRTMAALR---RETLVEMKI 396 (683)
Q Consensus 324 ~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~---~~-L~~L~L~~c~~it~~~l~~l~~~~---~~~L~~L~l 396 (683)
.+....++++|.+.+|. ++......+.... +. +..|++..|. +.+.++..+.... .++++++++
T Consensus 199 -------~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 199 -------AASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred -------hhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhh
Confidence 11123445555555554 4444433332211 22 3445554444 5555555544432 123455566
Q ss_pred ecccccCh-hhHHHHHHhcCCCccEEEEeeecCChhhHHHH
Q 038791 397 SCCKQLGA-VASCKALDLVRDRIEKLHIDCVWDGLELTESS 436 (683)
Q Consensus 397 ~~c~~l~~-~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~ 436 (683)
+.|..... ...+......|+.++.+.++++.+++++...+
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~ 310 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELL 310 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHH
Confidence 55544321 12233444455566666666555555444443
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.85 E-value=0.0095 Score=35.97 Aligned_cols=25 Identities=32% Similarity=0.797 Sum_probs=22.5
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 335 CGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 335 ~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
|++|++|+|++|..+||.++..+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 6789999999999999999998875
No 60
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.74 E-value=0.0033 Score=61.76 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=34.5
Q ss_pred cCCCCcHHHHHHHHhcCC----CCCccchhhhhhh-hhccccccc
Q 038791 5 TINNLPDRYARAELAVFS----QPEVPLAGEGHAH-LHHAPRQRA 44 (683)
Q Consensus 5 ~i~~LP~eiL~~If~~L~----~~~d~~~~s~VCk-W~~~~~~~~ 44 (683)
+|..||||||..||.++- +.+++.++|+||| |+..+++..
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~ 150 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPE 150 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChH
Confidence 468999999999998752 5689999999999 999997654
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.49 E-value=0.0076 Score=64.76 Aligned_cols=173 Identities=24% Similarity=0.216 Sum_probs=89.8
Q ss_pred CccEEEeccCCCCCCCCHHHHHHHHhhC-CCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCC
Q 038791 175 NLTCLNLLTTSFTEGFKAQEIREITAAC-PSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERG 253 (683)
Q Consensus 175 ~L~~L~L~~~~~c~~i~~~~l~~l~~~~-~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~ 253 (683)
.++.|++.+|. +++ +....... ++|+.|+++ .+.+.... .. ...+++|+.|+++++
T Consensus 117 ~l~~L~l~~n~----i~~--i~~~~~~~~~nL~~L~l~-------~N~i~~l~-~~-~~~l~~L~~L~l~~N-------- 173 (394)
T COG4886 117 NLTSLDLDNNN----ITD--IPPLIGLLKSNLKELDLS-------DNKIESLP-SP-LRNLPNLKNLDLSFN-------- 173 (394)
T ss_pred ceeEEecCCcc----ccc--Cccccccchhhccccccc-------ccchhhhh-hh-hhccccccccccCCc--------
Confidence 67777777654 222 22333333 267777773 12222210 12 246777777777654
Q ss_pred CCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccc
Q 038791 254 DPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVS 333 (683)
Q Consensus 254 ~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~ 333 (683)
.+++ ++......++|+.|++++ +.+.+ ++........|++|.+++-.. ...+..+.
T Consensus 174 ------------~l~~--l~~~~~~~~~L~~L~ls~-N~i~~----l~~~~~~~~~L~~l~~~~N~~-----~~~~~~~~ 229 (394)
T COG4886 174 ------------DLSD--LPKLLSNLSNLNNLDLSG-NKISD----LPPEIELLSALEELDLSNNSI-----IELLSSLS 229 (394)
T ss_pred ------------hhhh--hhhhhhhhhhhhheeccC-Ccccc----CchhhhhhhhhhhhhhcCCcc-----eecchhhh
Confidence 2222 222222567777777777 45554 333323344577777765221 13334455
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeeccccc
Q 038791 334 LCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQL 402 (683)
Q Consensus 334 ~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l 402 (683)
..+++..|.+..+. +.+. ......+++|+.|+++++. +++... ++.. .+|+.|+++++...
T Consensus 230 ~~~~l~~l~l~~n~-~~~~--~~~~~~l~~l~~L~~s~n~-i~~i~~--~~~~--~~l~~L~~s~n~~~ 290 (394)
T COG4886 230 NLKNLSGLELSNNK-LEDL--PESIGNLSNLETLDLSNNQ-ISSISS--LGSL--TNLRELDLSGNSLS 290 (394)
T ss_pred hcccccccccCCce-eeec--cchhccccccceecccccc-cccccc--cccc--CccCEEeccCcccc
Confidence 66666666655543 3221 1222336667888877776 454332 3333 67777777766544
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.47 E-value=0.0046 Score=59.66 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=64.3
Q ss_pred CCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCH-HHHHHHHH
Q 038791 307 CSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTV-DGLRTMAA 385 (683)
Q Consensus 307 ~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~-~~l~~l~~ 385 (683)
...|+.|.+.++.- ..+..+..+++|+.|.++.+..-...++..++..||+|++|++++|+ +.+ ..+..+..
T Consensus 42 ~~~le~ls~~n~gl------tt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~ 114 (260)
T KOG2739|consen 42 FVELELLSVINVGL------TTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKE 114 (260)
T ss_pred ccchhhhhhhccce------eecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhh
Confidence 44555555554322 12344556788999999876333344566677778999999999988 553 33444444
Q ss_pred hcccCccEEEeecccccChhhHHHHHHhcCCCccEEEE
Q 038791 386 LRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHI 423 (683)
Q Consensus 386 ~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L 423 (683)
. ++|..|++.+|....-..-=..+....++|+.|+-
T Consensus 115 l--~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 115 L--ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred h--cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 4 78889999888754311101112223366666653
No 63
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.42 E-value=0.0072 Score=62.55 Aligned_cols=38 Identities=5% Similarity=-0.074 Sum_probs=35.5
Q ss_pred CcCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhcccc
Q 038791 4 TTINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPR 41 (683)
Q Consensus 4 ~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~ 41 (683)
..|++||+|+|..|.++|+..-|+.+.+.||| ||..+.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 46899999999999999988889999999999 999885
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.40 E-value=0.013 Score=61.34 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=18.0
Q ss_pred CCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccc
Q 038791 281 LLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGV 321 (683)
Q Consensus 281 ~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l 321 (683)
+|++|.+++|.+++.. +... .++|+.|.+.+|..+
T Consensus 73 sLtsL~Lsnc~nLtsL----P~~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 73 ELTEITIENCNNLTTL----PGSI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred CCcEEEccCCCCcccC----Cchh--hhhhhheEccCcccc
Confidence 4666666666655332 1111 245666666665443
No 65
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.93 E-value=0.0046 Score=67.09 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=55.4
Q ss_pred CCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCC----CCceEEe-ceecCCCCccc
Q 038791 147 LKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACP----SLNKLLV-ACTFDPRYIGF 221 (683)
Q Consensus 147 L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~----~L~~L~L-~c~~~~~~~~~ 221 (683)
+..|.|.+|...+.. ...+...-...+.|+.|++++|. +.+.+...+....+ .|+.|++ .| .
T Consensus 89 l~~L~L~~~~l~~~~-~~~l~~~l~t~~~L~~L~l~~n~----l~~~g~~~l~~~l~~~~~~l~~L~l~~c--------~ 155 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRG-AEELAQALKTLPTLGQLDLSGNN----LGDEGARLLCEGLRLPQCLLQTLELVSC--------S 155 (478)
T ss_pred HHHhhhhhCccccch-HHHHHHHhcccccHhHhhcccCC----CccHhHHHHHhhcccchHHHHHHHhhcc--------c
Confidence 888999999875443 34444333466799999999876 55777776665554 4566777 44 3
Q ss_pred cCHHHHHHHH---hcCCCCcEEeecCC
Q 038791 222 VNDETLSAIA---TNCPKLTLLHLVDT 245 (683)
Q Consensus 222 l~~~~l~~l~---~~~~~L~~L~L~~c 245 (683)
+++++...++ ..+..++.+++..+
T Consensus 156 l~~~g~~~l~~~L~~~~~l~~l~l~~n 182 (478)
T KOG4308|consen 156 LTSEGAAPLAAVLEKNEHLTELDLSLN 182 (478)
T ss_pred ccccchHHHHHHHhcccchhHHHHHhc
Confidence 4444433332 23778888888754
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.81 E-value=0.02 Score=61.48 Aligned_cols=176 Identities=24% Similarity=0.272 Sum_probs=110.2
Q ss_pred hcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccc
Q 038791 142 EHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGF 221 (683)
Q Consensus 142 ~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~ 221 (683)
...+.++.|++.++.+. .++....... ++|+.|+++.|. +.. ++.-...+++|+.|+++ .+.
T Consensus 113 ~~~~~l~~L~l~~n~i~--~i~~~~~~~~---~nL~~L~l~~N~----i~~--l~~~~~~l~~L~~L~l~-------~N~ 174 (394)
T COG4886 113 LELTNLTSLDLDNNNIT--DIPPLIGLLK---SNLKELDLSDNK----IES--LPSPLRNLPNLKNLDLS-------FND 174 (394)
T ss_pred hcccceeEEecCCcccc--cCccccccch---hhcccccccccc----hhh--hhhhhhccccccccccC-------Cch
Confidence 34478999999988764 3333322220 289999999776 322 32335789999999993 224
Q ss_pred cCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHH
Q 038791 222 VNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLE 301 (683)
Q Consensus 222 l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~ 301 (683)
+++.. ......++|+.|++++. .+++ ++........|++|.++....+. ..
T Consensus 175 l~~l~--~~~~~~~~L~~L~ls~N--------------------~i~~--l~~~~~~~~~L~~l~~~~N~~~~-----~~ 225 (394)
T COG4886 175 LSDLP--KLLSNLSNLNNLDLSGN--------------------KISD--LPPEIELLSALEELDLSNNSIIE-----LL 225 (394)
T ss_pred hhhhh--hhhhhhhhhhheeccCC--------------------cccc--CchhhhhhhhhhhhhhcCCccee-----cc
Confidence 44322 22226789999999863 2322 22222334559999998732232 22
Q ss_pred HHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 038791 302 VLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCK 373 (683)
Q Consensus 302 ~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~ 373 (683)
....++.++..|.+..... ...+..++.+++|+.|+++++. +++... ++. ..+|+.|+++++.
T Consensus 226 ~~~~~~~~l~~l~l~~n~~-----~~~~~~~~~l~~l~~L~~s~n~-i~~i~~--~~~-~~~l~~L~~s~n~ 288 (394)
T COG4886 226 SSLSNLKNLSGLELSNNKL-----EDLPESIGNLSNLETLDLSNNQ-ISSISS--LGS-LTNLRELDLSGNS 288 (394)
T ss_pred hhhhhcccccccccCCcee-----eeccchhccccccceecccccc-cccccc--ccc-cCccCEEeccCcc
Confidence 3345677777777554211 1224667788899999999975 666443 333 7889999999987
No 67
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.68 E-value=0.011 Score=58.40 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=35.6
Q ss_pred CCcCCCCc----HHHHHHHHhcCCCCCccchhhhhhh-hhccccc
Q 038791 3 ATTINNLP----DRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQ 42 (683)
Q Consensus 3 ~~~i~~LP----~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~ 42 (683)
++.|+.|| ++|-+.||+|| +..++++|-+||| |+++..+
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyl-d~~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYL-DALSLCACELVCKEWKRVLSD 115 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHhcc
Confidence 45688999 99999999999 9999999999999 9999854
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.52 E-value=0.064 Score=56.39 Aligned_cols=12 Identities=0% Similarity=-0.191 Sum_probs=6.0
Q ss_pred CCCccEEEeccc
Q 038791 114 WPGLRHVKLVRW 125 (683)
Q Consensus 114 ~~~L~~L~L~~~ 125 (683)
|+++++|++++|
T Consensus 51 ~~~l~~L~Is~c 62 (426)
T PRK15386 51 ARASGRLYIKDC 62 (426)
T ss_pred hcCCCEEEeCCC
Confidence 345555555543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.011 Score=57.43 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEe-ceecCCC
Q 038791 139 PLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLV-ACTFDPR 217 (683)
Q Consensus 139 ~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~ 217 (683)
.+...++.|+.|.|+-|.+.+ +..+ ..|++|++|.|..|. |.+-.-...+.++|+|+.|+| .++
T Consensus 35 sic~kMp~lEVLsLSvNkIss------L~pl-~rCtrLkElYLRkN~----I~sldEL~YLknlpsLr~LWL~ENP---- 99 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISS------LAPL-QRCTRLKELYLRKNC----IESLDELEYLKNLPSLRTLWLDENP---- 99 (388)
T ss_pred HHHHhcccceeEEeecccccc------chhH-HHHHHHHHHHHHhcc----cccHHHHHHHhcCchhhhHhhccCC----
Confidence 344566666666666655421 1112 234566666666543 322211222356666666666 211
Q ss_pred CccccCHHHHHHHHhcCCCCcEEee
Q 038791 218 YIGFVNDETLSAIATNCPKLTLLHL 242 (683)
Q Consensus 218 ~~~~l~~~~l~~l~~~~~~L~~L~L 242 (683)
.+..-+...-..+...+|+|++|+=
T Consensus 100 Cc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred cccccchhHHHHHHHHcccchhccC
Confidence 0111122222233445667776664
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.26 E-value=0.059 Score=37.28 Aligned_cols=34 Identities=47% Similarity=0.640 Sum_probs=15.9
Q ss_pred CCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCC
Q 038791 146 CLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTS 185 (683)
Q Consensus 146 ~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 185 (683)
+|++|+++++.+. +++..+..++ +|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~----~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLP----NLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCT----TSSEEEETSSC
T ss_pred cceEEEccCCCCc--ccCchHhCCC----CCCEEEecCCC
Confidence 4555666555542 3433333333 66666666543
No 71
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.55 E-value=0.1 Score=36.08 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=29.1
Q ss_pred CCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCcccc
Q 038791 115 PGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFW 158 (683)
Q Consensus 115 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~ 158 (683)
++|++|+++++. -..+++.+..+++|+.|++++|.+.
T Consensus 1 ~~L~~L~l~~N~-------i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQ-------ITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS--------SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCC-------CcccCchHhCCCCCCEEEecCCCCC
Confidence 579999999765 2346777899999999999999863
No 72
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.89 E-value=0.077 Score=31.19 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=11.1
Q ss_pred CCCcEEEecCCCCCCHHHHHHHH
Q 038791 362 RRLIKFELEGCKNVTVDGLRTMA 384 (683)
Q Consensus 362 ~~L~~L~L~~c~~it~~~l~~l~ 384 (683)
++|++|+|++|. |++.++..++
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 455556665555 5555555543
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.84 E-value=0.071 Score=51.69 Aligned_cols=89 Identities=26% Similarity=0.343 Sum_probs=46.3
Q ss_pred cCCCCCEEEeeCcccc-CCChhHHHhhcCccCCCccEEEeccCCCCCCCCH-HHHHHHHhhCCCCceEEe-ceecCCCCc
Q 038791 143 HCECLKSIDLSNFYFW-TEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKA-QEIREITAACPSLNKLLV-ACTFDPRYI 219 (683)
Q Consensus 143 ~~~~L~~L~Ls~~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~-~~l~~l~~~~~~L~~L~L-~c~~~~~~~ 219 (683)
.+|+|+.|.++.++.. ...+.. +...||+|++|++++|. +.+ ..+..+ ..+++|..|++ .|. .
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nk----i~~lstl~pl-~~l~nL~~Ldl~n~~-----~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNK----IKDLSTLRPL-KELENLKSLDLFNCS-----V 128 (260)
T ss_pred CcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCc----cccccccchh-hhhcchhhhhcccCC-----c
Confidence 4557777777776321 122222 22233477777777765 322 112222 45567777777 443 2
Q ss_pred cccCHHHHHHHHhcCCCCcEEeecCCC
Q 038791 220 GFVNDETLSAIATNCPKLTLLHLVDTS 246 (683)
Q Consensus 220 ~~l~~~~l~~l~~~~~~L~~L~L~~c~ 246 (683)
.++.+. =+.++.-+|+|++|+-.++.
T Consensus 129 ~~l~dy-re~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 129 TNLDDY-REKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cccccH-HHHHHHHhhhhccccccccC
Confidence 223332 23344567888888876543
No 74
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=91.08 E-value=0.064 Score=57.41 Aligned_cols=117 Identities=22% Similarity=0.276 Sum_probs=74.7
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
+..|..|+++. |.++..+ .++..|| |+.|.++ +++... .+..++..++|..|+.++|++. +
T Consensus 120 L~~lt~l~ls~---NqlS~lp-~~lC~lp-Lkvli~s---NNkl~~-------lp~~ig~~~tl~~ld~s~nei~----s 180 (722)
T KOG0532|consen 120 LEALTFLDLSS---NQLSHLP-DGLCDLP-LKVLIVS---NNKLTS-------LPEEIGLLPTLAHLDVSKNEIQ----S 180 (722)
T ss_pred hhHHHHhhhcc---chhhcCC-hhhhcCc-ceeEEEe---cCcccc-------CCcccccchhHHHhhhhhhhhh----h
Confidence 45666777643 4443333 2345555 7888888 663221 2556677788888888888866 5
Q ss_pred cCCCCCCchhhHHHhhcc---------cceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccch
Q 038791 565 APGGETDLTLWDRFFFNG---------IGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTA 629 (683)
Q Consensus 565 ~p~~~~~l~~l~~~~l~~---------~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~ 629 (683)
+|+.+++|.++..+.+.. +..|.|..|++ +-| .-..||.. +-++..|+.|.+.+|.
T Consensus 181 lpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDf------ScN-kis~iPv~--fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDF------SCN-KISYLPVD--FRKMRHLQVLQLENNP 245 (722)
T ss_pred chHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeec------ccC-ceeecchh--hhhhhhheeeeeccCC
Confidence 688888888887776654 22344444443 333 34467887 8888888888877765
No 75
>PF13013 F-box-like_2: F-box-like domain
Probab=90.42 E-value=0.15 Score=42.83 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=27.9
Q ss_pred CcCCCCcHHHHHHHHhcCCCCCccchhhhhhh
Q 038791 4 TTINNLPDRYARAELAVFSQPEVPLAGEGHAH 35 (683)
Q Consensus 4 ~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk 35 (683)
.++.|||+|++..||.|. +..+...++..|+
T Consensus 20 ltl~DLP~ELl~~I~~~C-~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 20 LTLLDLPWELLQLIFDYC-NDPILLALSRTCR 50 (109)
T ss_pred cchhhChHHHHHHHHhhc-CcHHHHHHHHHHH
Confidence 358899999999999999 8889988888887
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.35 E-value=0.2 Score=29.35 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=17.4
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 335 CGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 335 ~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
+++|++|+|++|. +++.++.++++
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhCC
Confidence 4688999999887 89999888763
No 77
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.18 E-value=0.23 Score=46.40 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=47.5
Q ss_pred cccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHH
Q 038791 330 DGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCK 409 (683)
Q Consensus 330 ~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~ 409 (683)
..+..++.|.+|.+.++. |+.... .+....|+|+.|.+.+|.-..-..+..++. | |+|++|.+-+++--.-..-=.
T Consensus 58 ~~lp~l~rL~tLll~nNr-It~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~-p~L~~Ltll~Npv~~k~~YR~ 133 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNR-ITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLAS-C-PKLEYLTLLGNPVEHKKNYRL 133 (233)
T ss_pred ccCCCccccceEEecCCc-ceeecc-chhhhccccceEEecCcchhhhhhcchhcc-C-CccceeeecCCchhcccCcee
Confidence 344556667777777654 554332 233336677777777766222223444433 3 777777776665321100000
Q ss_pred HHHhcCCCccEEEEe
Q 038791 410 ALDLVRDRIEKLHID 424 (683)
Q Consensus 410 ~l~~~~~~L~~L~L~ 424 (683)
.++...|+|+.|+..
T Consensus 134 yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 134 YVLYKLPSLRTLDFQ 148 (233)
T ss_pred EEEEecCcceEeehh
Confidence 112234777777776
No 78
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.76 E-value=0.2 Score=46.69 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=16.9
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 038791 335 CGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCK 373 (683)
Q Consensus 335 ~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~ 373 (683)
.++|+.|.+.++.-..-..+..++. ||+|++|.+-+++
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLAS-CPKLEYLTLLGNP 124 (233)
T ss_pred ccccceEEecCcchhhhhhcchhcc-CCccceeeecCCc
Confidence 3445555555433111112233333 5566666655555
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=88.37 E-value=0.69 Score=49.74 Aligned_cols=96 Identities=19% Similarity=0.138 Sum_probs=51.7
Q ss_pred HHHHhccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCC
Q 038791 107 LEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSF 186 (683)
Q Consensus 107 L~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 186 (683)
|..+...+|.+.+++|+++.... -..+..+....|+|+.|+|+++..+-.... .+..+. -.-|++|.+.+|..
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~----Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k--~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYH----LDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLK--GLPLEELVLEGNPL 282 (585)
T ss_pred HHHhhcCCcceeeeecccchhhc----hhhhhHHHHhcchhheeecccchhhhcchh-hhhhhc--CCCHHHeeecCCcc
Confidence 44555667777777777655442 334555666677777777777622211111 122211 12577777777776
Q ss_pred CCCCCHH--HHHHHHhhCCCCceEE
Q 038791 187 TEGFKAQ--EIREITAACPSLNKLL 209 (683)
Q Consensus 187 c~~i~~~--~l~~l~~~~~~L~~L~ 209 (683)
|..+.+. .+.++...+|+|..|+
T Consensus 283 c~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 283 CTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred ccchhhhHHHHHHHHHhcchheeec
Confidence 6655432 2344444555555554
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=84.29 E-value=1.7 Score=26.63 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=13.2
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHH
Q 038791 362 RRLIKFELEGCKNVTVDGLRTMAA 385 (683)
Q Consensus 362 ~~L~~L~L~~c~~it~~~l~~l~~ 385 (683)
++|++|+|++|. +++.|...++.
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHH
Confidence 345666666655 56666555544
No 81
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=81.58 E-value=0.42 Score=51.58 Aligned_cols=106 Identities=23% Similarity=0.201 Sum_probs=53.1
Q ss_pred hCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHH
Q 038791 277 SGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVA 356 (683)
Q Consensus 277 ~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~ 356 (683)
..+.+|+.|++.+ +.+.. +......+++|++|++++ +.. ..+..+..++.|+.|++.++. +++.. .
T Consensus 92 ~~~~~l~~l~l~~-n~i~~----i~~~l~~~~~L~~L~ls~----N~I--~~i~~l~~l~~L~~L~l~~N~-i~~~~--~ 157 (414)
T KOG0531|consen 92 SKLKSLEALDLYD-NKIEK----IENLLSSLVNLQVLDLSF----NKI--TKLEGLSTLTLLKELNLSGNL-ISDIS--G 157 (414)
T ss_pred ccccceeeeeccc-cchhh----cccchhhhhcchheeccc----ccc--ccccchhhccchhhheeccCc-chhcc--C
Confidence 3456777777765 45533 223234567777777765 211 223444555566667766654 33211 1
Q ss_pred HHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeeccc
Q 038791 357 IGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCK 400 (683)
Q Consensus 357 l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~ 400 (683)
+. .+++|+.++++++. ++...... ...+ .+|+.+++.++.
T Consensus 158 ~~-~l~~L~~l~l~~n~-i~~ie~~~-~~~~-~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 158 LE-SLKSLKLLDLSYNR-IVDIENDE-LSEL-ISLEELDLGGNS 197 (414)
T ss_pred Cc-cchhhhcccCCcch-hhhhhhhh-hhhc-cchHHHhccCCc
Confidence 11 15556666666665 33332210 1222 556666666543
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=78.33 E-value=0.61 Score=51.65 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=36.7
Q ss_pred CCcCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhccccccc
Q 038791 3 ATTINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQRA 44 (683)
Q Consensus 3 ~~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~~ 44 (683)
.+.+..||.|+-.+||.|| +.++++.+++||+ |+.++..-.
T Consensus 105 ~dfi~~lp~el~~~il~~L-d~~~l~~~~~v~~~w~~~~~~~~ 146 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFL-DGRDLLAVRQVCRNWNKLLDDDK 146 (537)
T ss_pred cchhhcccchhcccccccC-CHHHhhhhhhhcchhhhhhhccc
Confidence 3568899999999999999 8999999999999 999996544
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=78.04 E-value=1.5 Score=47.34 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=14.5
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeec
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIK 521 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~ 521 (683)
+++|++|++++ |.|+.+ .++..++.|+.|++.
T Consensus 117 ~~~L~~L~ls~---N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 117 LVNLQVLDLSF---NKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hhcchheeccc---cccccc--cchhhccchhhheec
Confidence 45555555433 444332 224444445555555
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.97 E-value=3.2 Score=25.35 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.8
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcC
Q 038791 336 GGLESLSIKNCGDLSDMGLVAIGRGC 361 (683)
Q Consensus 336 ~~L~~L~L~~~~~lt~~~l~~l~~~~ 361 (683)
++|++|+|+++. +++.+...+++.+
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHHHh
Confidence 579999999976 9999999887643
No 85
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=71.43 E-value=1.5 Score=38.50 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=20.4
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 038791 334 LCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCK 373 (683)
Q Consensus 334 ~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~ 373 (683)
..+.++.|+++++. +++.... ++. +|.|+.|+++.|+
T Consensus 75 kf~t~t~lNl~~ne-isdvPeE-~Aa-m~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 75 KFPTATTLNLANNE-ISDVPEE-LAA-MPALRSLNLRFNP 111 (177)
T ss_pred ccchhhhhhcchhh-hhhchHH-Hhh-hHHhhhcccccCc
Confidence 44556666666643 5543333 444 5666666666665
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=67.55 E-value=4.6 Score=21.43 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=4.0
Q ss_pred CCcEEEecCCC
Q 038791 363 RLIKFELEGCK 373 (683)
Q Consensus 363 ~L~~L~L~~c~ 373 (683)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444443
No 87
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=66.81 E-value=4.5 Score=39.40 Aligned_cols=32 Identities=16% Similarity=-0.010 Sum_probs=29.7
Q ss_pred CCcCCCCcHHHHHHHHhcCCCCCccchhhhhh
Q 038791 3 ATTINNLPDRYARAELAVFSQPEVPLAGEGHA 34 (683)
Q Consensus 3 ~~~i~~LP~eiL~~If~~L~~~~d~~~~s~VC 34 (683)
+.++.+||.|++..|+..|+|.+|+..+++|-
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~ 230 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAW 230 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhh
Confidence 56789999999999999999999999999886
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=63.37 E-value=3 Score=36.66 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=14.0
Q ss_pred CccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEe
Q 038791 175 NLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLV 210 (683)
Q Consensus 175 ~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L 210 (683)
.++.|+|++|. +.+ ++.-+..+|.|+.|++
T Consensus 78 t~t~lNl~~ne----isd--vPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 78 TATTLNLANNE----ISD--VPEELAAMPALRSLNL 107 (177)
T ss_pred hhhhhhcchhh----hhh--chHHHhhhHHhhhccc
Confidence 55555555443 222 2222344555555555
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=54.11 E-value=8 Score=33.50 Aligned_cols=55 Identities=18% Similarity=0.349 Sum_probs=23.5
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRL 553 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l 553 (683)
+++|+.+.+. ..+..++...+.+|++|+.+.+. +. + ..++...+..+++|+.+.+
T Consensus 34 ~~~l~~i~~~----~~~~~i~~~~F~~~~~l~~i~~~---~~--~-----~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 34 CTSLKSINFP----NNLTSIGDNAFSNCKSLESITFP---NN--L-----KSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp -TT-SEEEES----STTSCE-TTTTTT-TT-EEEEET---ST--T------EE-TTTTTT-TTECEEEE
T ss_pred cccccccccc----ccccccceeeeeccccccccccc---cc--c-----ccccccccccccccccccc
Confidence 4556655531 12444444445666666666665 32 0 1233344555566665555
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=53.79 E-value=6.3 Score=22.40 Aligned_cols=12 Identities=25% Similarity=0.110 Sum_probs=5.8
Q ss_pred cccccccccccc
Q 038791 548 LTKLRLEFGETI 559 (683)
Q Consensus 548 L~~L~l~~~~~~ 559 (683)
|++|+++.|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.63 E-value=17 Score=39.47 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=35.4
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCC--CCCCHHHHHHHHHhcccCccEEEeecccccCh
Q 038791 334 LCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGC--KNVTVDGLRTMAALRRETLVEMKISCCKQLGA 404 (683)
Q Consensus 334 ~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c--~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~ 404 (683)
+.+.+..++|+++.-..-+.+..+++..|+|+.|+|+++ ..-++..+..+. . ..|++|.+.+++..++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~--l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-G--LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-C--CCHHHeeecCCccccc
Confidence 344555555555442333445556666677777777776 312222222221 1 5677777777665543
No 92
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=40.43 E-value=59 Score=27.84 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=6.0
Q ss_pred CCCCCCcceeeec
Q 038791 509 LDDCPVLEEIRIK 521 (683)
Q Consensus 509 L~~~~~L~~L~l~ 521 (683)
+.+|++|+.+.+.
T Consensus 77 F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 77 FSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TTECEEEET
T ss_pred ccccccccccccC
Confidence 4445555555553
No 93
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=33.27 E-value=8.4 Score=42.02 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=17.5
Q ss_pred hhhhccCcccccccccccccceeecccCCCCCCch
Q 038791 539 LSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLT 573 (683)
Q Consensus 539 ~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~ 573 (683)
+..+.++..|..++|+.|++.- .|.++.+|+
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~----lp~~lC~lp 144 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSH----LPDGLCDLP 144 (722)
T ss_pred chhhhhhhHHHHhhhccchhhc----CChhhhcCc
Confidence 4556666666677776666552 344444443
No 94
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=31.46 E-value=19 Score=34.76 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=65.7
Q ss_pred hhhccCcccccccccccccceeecccCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhh
Q 038791 540 SCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLT 619 (683)
Q Consensus 540 ~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~ 619 (683)
..+..+..-+.|+++.|+..... ..+.-++.++|+.++. |+.- -+|.. .++...
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~----~n~s~~t~~~rl~~sk-------------------nq~~-~~~~d--~~q~~e 89 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLG----KNFSILTRLVRLDLSK-------------------NQIK-FLPKD--AKQQRE 89 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhc----cchHHHHHHHHHhccH-------------------hhHh-hChhh--HHHHHH
Confidence 34555666777888777654311 1223344555554432 2221 13444 666778
Q ss_pred hhhhhhccchhhHHHHHHhcCCccccccccc-ccCCCCCCCCcchhchhhhhHHH
Q 038791 620 LRKLIIHGTAHEHFMMFFTRMPNVRDVQLRE-DYYPAPADDSTTEMREDSHRRFE 673 (683)
Q Consensus 620 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 673 (683)
++.+..|.|.|+|-...+.+.|-+|...++. .+||| -|-.++||+-.-
T Consensus 90 ~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~~~------~~~~v~~c~~~~ 138 (326)
T KOG0473|consen 90 TVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFFRK------LFGFVWSCVFYL 138 (326)
T ss_pred HHHHHhhccchhhCCccccccCCcchhhhccCcchHH------HHhHhhhhhhhH
Confidence 9999999999999999999999999988764 35555 345678886543
No 95
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=30.48 E-value=42 Score=20.06 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=9.8
Q ss_pred CcEEEeccCCCCCHHHHHHHHhcCC
Q 038791 338 LESLSIKNCGDLSDMGLVAIGRGCR 362 (683)
Q Consensus 338 L~~L~L~~~~~lt~~~l~~l~~~~~ 362 (683)
|++|+|.....-.+..+..+..+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4444444433112223444444443
No 96
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=25.75 E-value=80 Score=25.61 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=35.6
Q ss_pred hhhhhhhccchhhHHHHHHhcCCcccccccccccCCCC---CCCCcch
Q 038791 619 TLRKLIIHGTAHEHFMMFFTRMPNVRDVQLREDYYPAP---ADDSTTE 663 (683)
Q Consensus 619 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 663 (683)
-|-+|+|.-.+||+-+..|-+--==-|+.|++||-+.+ +-|-|+|
T Consensus 36 ~L~~lfierGR~ETtW~vLR~FgY~d~L~L~d~~l~p~l~v~~~~svE 83 (89)
T PF08356_consen 36 FLNKLFIERGRHETTWTVLRKFGYDDDLSLSDDFLYPKLDVPPDQSVE 83 (89)
T ss_pred HHHHHHHHhCcchHHHHHHHHcCCCCcceeccccCCCCccCCCCCeee
Confidence 48889999999999999888777778999999996652 2345555
No 97
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=20.10 E-value=61 Score=33.21 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=32.2
Q ss_pred cCCCCcHHHHHHHHhcCCCCC-------ccchhhhhhh-hhccccccc
Q 038791 5 TINNLPDRYARAELAVFSQPE-------VPLAGEGHAH-LHHAPRQRA 44 (683)
Q Consensus 5 ~i~~LP~eiL~~If~~L~~~~-------d~~~~s~VCk-W~~~~~~~~ 44 (683)
.+.+||.|.|..|+......+ ..++++-||+ |+.++....
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v 91 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIV 91 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccc
Confidence 577999999999999985333 4578999999 999885443
Done!