Query 038791
Match_columns 683
No_of_seqs 621 out of 4017
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 04:54:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 6.6E-35 2.3E-39 329.8 21.5 453 1-558 1-518 (594)
2 3ogk_B Coronatine-insensitive 100.0 2.6E-33 9E-38 316.5 25.0 452 7-560 14-527 (592)
3 2ast_B S-phase kinase-associat 99.9 4E-27 1.4E-31 246.2 16.4 294 3-399 6-303 (336)
4 2p1m_B Transport inhibitor res 99.9 1.7E-24 5.8E-29 244.4 26.0 388 100-555 115-540 (594)
5 3ogk_B Coronatine-insensitive 99.9 5.2E-24 1.8E-28 240.4 22.9 398 101-556 123-548 (592)
6 3rgz_A Protein brassinosteroid 99.9 8.7E-26 3E-30 262.0 7.0 206 141-400 174-379 (768)
7 3rgz_A Protein brassinosteroid 99.9 2E-26 6.9E-31 267.3 -1.3 431 112-630 97-550 (768)
8 1z7x_W Ribonuclease inhibitor; 99.9 5.8E-24 2E-28 232.3 12.3 344 115-560 3-384 (461)
9 1z7x_W Ribonuclease inhibitor; 99.9 1.3E-22 4.4E-27 221.6 21.2 365 101-560 14-412 (461)
10 3t6q_A CD180 antigen; protein- 99.9 6E-24 2E-28 240.5 2.7 153 453-630 395-559 (606)
11 3vq2_A TLR4, TOLL-like recepto 99.9 6.3E-24 2.2E-28 240.3 1.1 34 485-521 398-432 (606)
12 3t6q_A CD180 antigen; protein- 99.9 4E-24 1.4E-28 241.9 -2.9 175 453-652 371-558 (606)
13 1ziw_A TOLL-like receptor 3; i 99.8 3.7E-22 1.3E-26 229.0 6.2 232 115-400 25-259 (680)
14 3vq2_A TLR4, TOLL-like recepto 99.8 3.2E-22 1.1E-26 226.4 4.0 263 305-630 282-557 (606)
15 1ziw_A TOLL-like receptor 3; i 99.8 1.9E-22 6.4E-27 231.5 0.0 479 112-652 70-620 (680)
16 4eco_A Uncharacterized protein 99.8 8.3E-23 2.8E-27 231.6 -4.2 103 486-629 488-598 (636)
17 4ecn_A Leucine-rich repeat pro 99.8 1E-22 3.4E-27 235.3 -3.9 56 486-555 728-785 (876)
18 2z81_A CD282 antigen, TOLL-lik 99.8 7.3E-22 2.5E-26 220.6 0.5 309 277-629 169-508 (549)
19 2z81_A CD282 antigen, TOLL-lik 99.8 7.9E-21 2.7E-25 212.2 8.5 410 112-582 47-482 (549)
20 2z63_A TOLL-like receptor 4, v 99.8 3.5E-22 1.2E-26 224.2 -3.2 202 330-581 276-478 (570)
21 4eco_A Uncharacterized protein 99.8 2.9E-21 9.9E-26 218.9 3.8 344 137-558 198-578 (636)
22 3v47_A TOLL-like receptor 5B a 99.8 1.3E-20 4.5E-25 205.2 5.6 109 115-245 30-139 (455)
23 1o6v_A Internalin A; bacterial 99.8 1.3E-19 4.6E-24 197.8 12.2 323 115-561 46-368 (466)
24 2z7x_B TOLL-like receptor 1, v 99.8 8.1E-21 2.8E-25 210.6 2.4 423 115-651 21-478 (520)
25 3j0a_A TOLL-like receptor 5; m 99.8 4E-21 1.4E-25 225.1 -0.4 437 115-652 24-537 (844)
26 3v47_A TOLL-like receptor 5B a 99.8 5.6E-20 1.9E-24 200.3 6.5 335 145-560 30-385 (455)
27 3j0a_A TOLL-like receptor 5; m 99.8 4.8E-21 1.6E-25 224.5 -2.8 284 280-630 266-559 (844)
28 4ecn_A Leucine-rich repeat pro 99.8 7.6E-20 2.6E-24 211.3 7.0 344 137-558 440-818 (876)
29 2ast_B S-phase kinase-associat 99.8 1.7E-18 5.9E-23 180.5 15.3 254 116-428 48-305 (336)
30 1o6v_A Internalin A; bacterial 99.8 1E-17 3.5E-22 182.8 20.2 324 112-560 65-389 (466)
31 2z63_A TOLL-like receptor 4, v 99.8 8.8E-22 3E-26 221.0 -12.9 449 115-653 28-530 (570)
32 4fmz_A Internalin; leucine ric 99.8 4.5E-18 1.6E-22 178.1 14.5 304 113-558 42-345 (347)
33 4fmz_A Internalin; leucine ric 99.7 4.5E-18 1.5E-22 178.2 13.3 285 142-560 41-325 (347)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.5E-19 1.5E-23 198.4 4.2 29 600-630 481-509 (562)
35 3bz5_A Internalin-J, INLJ; leu 99.7 4.5E-18 1.5E-22 184.5 11.3 350 113-611 40-393 (457)
36 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-17 4.2E-22 185.0 15.1 370 112-560 42-458 (520)
37 2ca6_A RAN GTPase-activating p 99.7 7.7E-17 2.6E-21 171.4 18.7 274 111-424 28-338 (386)
38 2id5_A Lingo-1, leucine rich r 99.7 5.7E-18 2E-22 185.5 0.8 65 484-560 270-334 (477)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 8.8E-17 3E-21 179.8 10.4 370 112-560 73-487 (562)
40 2ca6_A RAN GTPase-activating p 99.7 5.4E-15 1.9E-19 157.1 23.3 262 137-432 24-319 (386)
41 2id5_A Lingo-1, leucine rich r 99.7 1.1E-17 3.9E-22 183.1 2.1 279 174-560 32-310 (477)
42 3bz5_A Internalin-J, INLJ; leu 99.6 1.8E-16 6.3E-21 171.8 7.7 315 112-562 61-390 (457)
43 4g8a_A TOLL-like receptor 4; l 99.6 4.5E-17 1.5E-21 184.9 2.3 134 116-294 53-186 (635)
44 3o6n_A APL1; leucine-rich repe 99.6 1.2E-16 4E-21 170.3 4.0 310 114-560 44-353 (390)
45 3o6n_A APL1; leucine-rich repe 99.6 1E-16 3.4E-21 170.8 1.7 307 174-630 45-351 (390)
46 3oja_B Anopheles plasmodium-re 99.6 7.8E-16 2.7E-20 173.2 5.2 237 114-424 50-286 (597)
47 3goz_A Leucine-rich repeat-con 99.6 3.7E-14 1.3E-18 149.1 17.6 268 134-436 11-304 (362)
48 3oja_B Anopheles plasmodium-re 99.6 3.5E-16 1.2E-20 176.0 2.0 307 174-630 51-357 (597)
49 3goz_A Leucine-rich repeat-con 99.6 9.3E-14 3.2E-18 146.1 19.2 258 108-402 15-297 (362)
50 1jl5_A Outer protein YOPM; leu 99.6 2E-16 6.7E-21 171.5 -1.6 108 486-650 317-425 (454)
51 1ogq_A PGIP-2, polygalacturona 99.5 3E-16 1E-20 161.6 -1.0 251 280-630 50-303 (313)
52 1ogq_A PGIP-2, polygalacturona 99.5 1.7E-15 5.7E-20 156.1 1.5 231 275-583 71-301 (313)
53 2z80_A TOLL-like receptor 2, v 99.5 1.3E-14 4.4E-19 152.2 8.0 192 276-526 120-311 (353)
54 4fcg_A Uncharacterized protein 99.5 2.7E-15 9.2E-20 155.5 -1.6 78 114-210 80-157 (328)
55 1jl5_A Outer protein YOPM; leu 99.4 1.1E-13 3.9E-18 149.7 8.6 71 485-570 336-419 (454)
56 4g8a_A TOLL-like receptor 4; l 99.4 3.3E-14 1.1E-18 161.2 3.7 123 485-629 444-578 (635)
57 1xku_A Decorin; proteoglycan, 99.4 2.7E-14 9.3E-19 148.2 2.4 107 280-400 121-227 (330)
58 4fcg_A Uncharacterized protein 99.4 5.6E-14 1.9E-18 145.5 4.3 82 279-373 80-161 (328)
59 3o53_A Protein LRIM1, AGAP0063 99.4 9E-14 3.1E-18 143.3 4.7 249 271-630 25-274 (317)
60 1xku_A Decorin; proteoglycan, 99.4 2.3E-13 7.8E-18 141.2 6.4 226 280-560 52-277 (330)
61 2ft3_A Biglycan; proteoglycan, 99.3 2.4E-13 8.2E-18 141.1 3.1 240 281-582 34-273 (332)
62 3zyi_A Leucine-rich repeat-con 99.3 1.4E-13 4.7E-18 149.4 1.0 84 278-373 194-277 (452)
63 3o53_A Protein LRIM1, AGAP0063 99.3 1.9E-13 6.6E-18 140.8 0.9 251 226-586 25-275 (317)
64 2z66_A Variable lymphocyte rec 99.3 3.6E-13 1.2E-17 138.1 2.5 211 280-561 28-238 (306)
65 2z80_A TOLL-like receptor 2, v 99.3 8.9E-13 3E-17 138.1 5.5 258 115-429 52-314 (353)
66 3oja_A Leucine-rich immune mol 99.3 1.2E-13 4.1E-18 151.0 -1.3 240 277-627 31-271 (487)
67 3oja_A Leucine-rich immune mol 99.3 5.4E-13 1.8E-17 145.8 3.3 217 276-581 54-270 (487)
68 2ft3_A Biglycan; proteoglycan, 99.3 1.2E-13 4.1E-18 143.4 -2.2 278 279-629 53-331 (332)
69 3zyi_A Leucine-rich repeat-con 99.3 4.9E-13 1.7E-17 145.1 2.0 228 280-558 75-302 (452)
70 3zyj_A Leucine-rich repeat-con 99.3 5.2E-13 1.8E-17 144.4 1.8 229 280-559 64-292 (440)
71 2z66_A Variable lymphocyte rec 99.3 2.4E-13 8.2E-18 139.4 -1.3 215 276-561 48-263 (306)
72 3zyj_A Leucine-rich repeat-con 99.3 1.1E-12 3.7E-17 141.8 3.5 228 307-629 63-290 (440)
73 1wwl_A Monocyte differentiatio 99.3 2.5E-13 8.4E-18 139.7 -2.0 211 143-401 93-308 (312)
74 3g06_A SSPH2 (leucine-rich rep 99.3 4.7E-12 1.6E-16 141.5 8.2 59 485-560 240-298 (622)
75 1ozn_A Reticulon 4 receptor; N 99.3 2E-12 6.8E-17 131.1 4.7 209 279-560 31-239 (285)
76 3e4g_A ATP synthase subunit S, 99.3 1.7E-11 5.8E-16 112.3 9.9 106 308-419 61-170 (176)
77 3un9_A NLR family member X1; l 99.2 6.1E-11 2.1E-15 124.5 15.1 54 331-386 206-262 (372)
78 1wwl_A Monocyte differentiatio 99.2 5.6E-12 1.9E-16 129.5 6.9 209 278-560 93-310 (312)
79 3e4g_A ATP synthase subunit S, 99.2 8.1E-12 2.8E-16 114.4 6.4 104 280-392 61-170 (176)
80 1ozn_A Reticulon 4 receptor; N 99.2 2.7E-12 9.2E-17 130.1 3.2 186 307-561 31-216 (285)
81 3rfs_A Internalin B, repeat mo 99.2 8.4E-12 2.9E-16 125.5 5.9 105 279-400 40-144 (272)
82 3rfs_A Internalin B, repeat mo 99.2 6.3E-12 2.2E-16 126.4 4.5 107 305-427 38-144 (272)
83 4glp_A Monocyte differentiatio 99.2 2.1E-12 7.3E-17 132.6 0.8 211 144-401 90-306 (310)
84 4glp_A Monocyte differentiatio 99.2 1.2E-11 4.1E-16 126.9 6.1 225 266-559 75-307 (310)
85 3un9_A NLR family member X1; l 99.2 1.3E-10 4.4E-15 121.9 13.9 200 144-378 71-285 (372)
86 3g06_A SSPH2 (leucine-rich rep 99.2 2.4E-11 8.3E-16 135.8 7.7 74 485-582 220-293 (622)
87 1h6u_A Internalin H; cell adhe 99.1 7E-11 2.4E-15 121.0 6.8 82 276-373 125-206 (308)
88 1h6u_A Internalin H; cell adhe 99.1 1.1E-10 3.8E-15 119.5 8.2 192 279-560 40-231 (308)
89 2z62_A TOLL-like receptor 4, v 99.0 9.9E-11 3.4E-15 117.9 2.6 19 542-560 220-238 (276)
90 2o6q_A Variable lymphocyte rec 99.0 3.3E-10 1.1E-14 113.6 5.8 203 281-560 17-219 (270)
91 2z62_A TOLL-like receptor 4, v 99.0 8.7E-11 3E-15 118.3 0.7 203 280-526 28-234 (276)
92 1p9a_G Platelet glycoprotein I 98.9 8.4E-10 2.9E-14 111.8 5.6 202 277-559 7-208 (290)
93 4ezg_A Putative uncharacterize 98.9 8.7E-10 3E-14 104.8 5.2 125 279-424 43-167 (197)
94 4ezg_A Putative uncharacterize 98.9 7.3E-10 2.5E-14 105.4 4.6 152 233-428 42-193 (197)
95 1p9a_G Platelet glycoprotein I 98.9 4.5E-10 1.5E-14 113.8 3.2 81 306-400 8-88 (290)
96 1h6t_A Internalin B; cell adhe 98.9 2.4E-09 8.2E-14 108.5 7.2 101 279-400 45-145 (291)
97 2xwt_C Thyrotropin receptor; s 98.8 4.5E-10 1.5E-14 110.4 1.1 86 280-373 31-116 (239)
98 2o6q_A Variable lymphocyte rec 98.8 1.4E-09 4.9E-14 109.0 4.3 179 280-526 37-215 (270)
99 1h6t_A Internalin B; cell adhe 98.8 2.5E-09 8.5E-14 108.4 5.5 62 331-401 151-212 (291)
100 1m9s_A Internalin B; cell inva 98.8 4.3E-09 1.5E-13 117.4 6.9 168 278-527 41-208 (605)
101 2ra8_A Uncharacterized protein 98.8 7.5E-08 2.6E-12 100.1 15.8 135 279-424 192-338 (362)
102 2ra8_A Uncharacterized protein 98.8 5.9E-08 2E-12 100.8 14.7 166 195-400 164-341 (362)
103 2xwt_C Thyrotropin receptor; s 98.8 5.1E-10 1.8E-14 110.0 -0.9 184 307-560 30-219 (239)
104 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 2.6E-09 8.8E-14 77.3 2.5 41 3-44 6-47 (53)
105 3m19_A Variable lymphocyte rec 98.7 6E-09 2.1E-13 103.1 4.2 64 485-560 130-193 (251)
106 1m9s_A Internalin B; cell inva 98.7 1E-08 3.4E-13 114.4 4.5 17 141-157 61-77 (605)
107 2je0_A Acidic leucine-rich nuc 98.7 1.5E-08 5.1E-13 91.4 4.7 39 276-315 109-147 (149)
108 2je0_A Acidic leucine-rich nuc 98.6 2E-08 6.8E-13 90.5 4.9 134 278-424 15-148 (149)
109 3sb4_A Hypothetical leucine ri 98.6 4.4E-08 1.5E-12 101.1 6.9 36 361-399 201-236 (329)
110 1io0_A Tropomodulin; LRR prote 98.6 3.4E-07 1.2E-11 85.7 12.3 132 270-431 26-166 (185)
111 2o6s_A Variable lymphocyte rec 98.6 1.3E-08 4.4E-13 97.6 2.1 66 485-572 123-188 (208)
112 3m19_A Variable lymphocyte rec 98.6 3E-08 1E-12 98.0 4.4 36 485-526 154-189 (251)
113 2ell_A Acidic leucine-rich nuc 98.5 1.9E-08 6.4E-13 92.8 2.3 41 277-318 117-157 (168)
114 2o6s_A Variable lymphocyte rec 98.5 4.2E-08 1.5E-12 93.9 4.8 64 485-560 99-162 (208)
115 1dce_A Protein (RAB geranylger 98.5 1.2E-09 4.2E-14 121.0 -7.1 126 280-423 441-567 (567)
116 2ell_A Acidic leucine-rich nuc 98.5 2.4E-08 8.2E-13 92.0 2.0 136 278-427 22-158 (168)
117 1io0_A Tropomodulin; LRR prote 98.5 5.7E-07 1.9E-11 84.2 11.5 106 331-439 31-146 (185)
118 1dce_A Protein (RAB geranylger 98.5 1.7E-09 5.8E-14 119.9 -7.0 206 143-396 347-567 (567)
119 1xeu_A Internalin C; cellular 98.4 5.6E-08 1.9E-12 96.8 1.5 38 332-373 124-161 (263)
120 3cvr_A Invasion plasmid antige 98.4 1.8E-07 6.3E-12 103.1 5.6 182 279-562 58-246 (571)
121 1xeu_A Internalin C; cellular 98.4 1.2E-07 4E-12 94.4 2.9 116 282-424 21-136 (263)
122 3sb4_A Hypothetical leucine ri 98.3 1.2E-07 4.2E-12 97.7 2.5 87 456-560 224-311 (329)
123 4ay9_X Follicle-stimulating ho 98.3 1.6E-08 5.4E-13 105.4 -4.5 136 280-427 30-165 (350)
124 3cvr_A Invasion plasmid antige 98.3 5.4E-07 1.9E-11 99.4 6.9 110 279-424 79-188 (571)
125 1a9n_A U2A', U2A'; complex (nu 98.3 2.2E-07 7.6E-12 86.2 3.2 136 277-428 16-152 (176)
126 1ds9_A Outer arm dynein; leuci 98.3 1.3E-07 4.4E-12 89.7 1.1 112 136-290 39-150 (198)
127 4ay9_X Follicle-stimulating ho 98.3 9E-08 3.1E-12 99.7 -0.0 87 308-401 30-116 (350)
128 2v70_A SLIT-2, SLIT homolog 2 98.2 8.9E-07 3.1E-11 85.4 5.6 110 485-630 56-165 (220)
129 3e6j_A Variable lymphocyte rec 98.2 3.9E-07 1.3E-11 88.6 2.0 108 485-629 63-170 (229)
130 2v70_A SLIT-2, SLIT homolog 2 98.2 7.6E-08 2.6E-12 93.0 -3.2 86 278-373 55-140 (220)
131 2v9t_B SLIT homolog 2 protein 98.1 4.1E-07 1.4E-11 87.8 1.1 110 485-630 55-164 (220)
132 2v9t_B SLIT homolog 2 protein 98.1 1.8E-06 6E-11 83.3 5.6 112 416-561 32-143 (220)
133 1a9n_A U2A', U2A'; complex (nu 98.1 2.9E-07 9.9E-12 85.4 -0.1 133 233-401 17-152 (176)
134 1ds9_A Outer arm dynein; leuci 98.1 3E-07 1E-11 87.1 0.0 130 275-422 43-180 (198)
135 3e6j_A Variable lymphocyte rec 98.1 2E-06 6.8E-11 83.5 5.5 111 416-561 40-150 (229)
136 2xot_A Amphoterin-induced prot 98.1 1.9E-07 6.5E-12 97.6 -2.1 113 278-402 86-202 (361)
137 2xot_A Amphoterin-induced prot 98.0 4.2E-06 1.4E-10 87.4 5.4 35 363-399 40-74 (361)
138 4b8c_D Glucose-repressible alc 97.9 5.1E-06 1.7E-10 94.9 4.8 65 484-562 268-332 (727)
139 3l2o_B F-box only protein 4; s 97.9 3.6E-07 1.2E-11 89.0 -4.6 41 3-44 2-43 (312)
140 1w8a_A SLIT protein; signaling 97.9 3.8E-06 1.3E-10 79.0 2.5 64 485-560 53-116 (192)
141 1pgv_A TMD-1, tropomodulin TMD 97.9 0.00011 3.8E-09 68.3 12.3 89 334-424 68-165 (197)
142 1pgv_A TMD-1, tropomodulin TMD 97.8 7.6E-05 2.6E-09 69.4 10.3 125 270-399 31-167 (197)
143 2e31_A FBS1, F-box only protei 97.8 3.8E-06 1.3E-10 83.0 1.5 43 1-44 46-90 (297)
144 2o6r_A Variable lymphocyte rec 97.7 6.4E-06 2.2E-10 76.2 1.4 113 279-404 27-139 (177)
145 2wfh_A SLIT homolog 2 protein 97.7 3.9E-06 1.4E-10 79.0 -0.2 108 280-401 31-138 (193)
146 2o6r_A Variable lymphocyte rec 97.7 2E-05 7E-10 72.8 3.9 109 485-629 27-135 (177)
147 2wfh_A SLIT homolog 2 protein 97.7 1.6E-05 5.4E-10 74.8 2.9 109 485-630 30-138 (193)
148 4fs7_A Uncharacterized protein 97.7 2.2E-06 7.5E-11 90.7 -3.7 60 276-345 158-217 (394)
149 1w8a_A SLIT protein; signaling 97.6 0.00011 3.7E-09 68.9 7.5 91 454-560 50-140 (192)
150 4fs7_A Uncharacterized protein 97.4 1.9E-06 6.6E-11 91.1 -8.7 120 485-647 275-394 (394)
151 4fdw_A Leucine rich hypothetic 97.3 4.4E-05 1.5E-09 80.5 1.1 33 309-346 158-190 (401)
152 4b8c_D Glucose-repressible alc 97.3 3.7E-05 1.3E-09 87.8 -0.2 108 484-631 222-329 (727)
153 3g39_A Variable lymphocyte rec 97.2 0.00033 1.1E-08 64.1 5.1 63 486-560 30-92 (170)
154 4gt6_A Cell surface protein; l 97.1 4.8E-05 1.7E-09 80.2 -1.1 15 140-154 82-96 (394)
155 3v7d_B Cell division control p 97.0 7.8E-05 2.7E-09 80.1 -0.6 39 3-42 12-51 (464)
156 4fdw_A Leucine rich hypothetic 97.0 0.0002 7E-09 75.4 2.2 60 276-345 176-235 (401)
157 2r9u_A Variable lymphocyte rec 96.9 0.00044 1.5E-08 63.6 3.4 63 486-560 33-95 (174)
158 4gt6_A Cell surface protein; l 96.9 0.00039 1.3E-08 73.2 3.4 121 485-648 264-385 (394)
159 3g39_A Variable lymphocyte rec 96.9 0.00064 2.2E-08 62.2 4.3 87 458-560 30-116 (170)
160 3rw6_A Nuclear RNA export fact 96.8 0.0016 5.3E-08 64.0 6.8 16 142-157 167-182 (267)
161 2r9u_A Variable lymphocyte rec 96.8 0.00075 2.6E-08 61.9 4.3 87 458-560 33-119 (174)
162 2ifg_A High affinity nerve gro 96.7 0.00055 1.9E-08 70.6 2.4 66 485-561 30-95 (347)
163 2ovr_B FBW7, F-BOX/WD repeat p 96.6 0.00043 1.5E-08 74.0 1.3 39 3-42 16-55 (445)
164 1p22_A F-BOX/WD-repeat protein 96.6 0.00024 8.3E-09 75.7 -1.4 40 3-43 8-52 (435)
165 3rw6_A Nuclear RNA export fact 96.3 0.0086 2.9E-07 58.7 8.2 86 275-368 165-257 (267)
166 2ifg_A High affinity nerve gro 96.0 0.0045 1.6E-07 63.6 4.6 90 454-560 27-117 (347)
167 4h09_A Hypothetical leucine ri 85.5 0.73 2.5E-05 47.5 5.1 56 485-553 262-317 (379)
168 4h09_A Hypothetical leucine ri 75.2 4.8 0.00016 41.2 7.0 58 484-554 284-341 (379)
169 2lz0_A Uncharacterized protein 57.0 9.4 0.00032 30.6 3.8 46 499-554 6-51 (100)
170 2lz0_A Uncharacterized protein 43.0 32 0.0011 27.4 4.8 41 475-521 11-51 (100)
171 3rfe_A Platelet glycoprotein I 41.8 16 0.00055 30.7 3.0 35 146-185 32-66 (130)
172 3rfe_A Platelet glycoprotein I 36.1 19 0.00063 30.3 2.5 32 487-521 32-63 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=6.6e-35 Score=329.77 Aligned_cols=453 Identities=17% Similarity=0.159 Sum_probs=272.2
Q ss_pred CCCCcCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhcccccccCCCCCCcccccCCCCCCCCCCCCCCccchhhhccc
Q 038791 1 MAATTINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALR 79 (683)
Q Consensus 1 m~~~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~~~~~r~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (683)
|.++.|++||||||.+||+||+..+|++++++||| |+++....+ + ...+..
T Consensus 1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~---~----------~l~~~~--------------- 52 (594)
T 2p1m_B 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCR---R----------KVFIGN--------------- 52 (594)
T ss_dssp ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHC---C----------EEEESS---------------
T ss_pred CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhc---e----------EEeecc---------------
Confidence 77889999999999999999933999999999999 999953222 0 000000
Q ss_pred CCCCCCCCCCChhhhhhcccCccCHHHHHHHhccCCCccEEEeccccccccC-----CC----cccHHHHhhcCCCCCEE
Q 038791 80 SSPTRPPLTSGLPVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQA-----PL----GAEFIPLFEHCECLKSI 150 (683)
Q Consensus 80 ~~~~~~~~~~~l~~~~~l~~~~~~~~~L~~l~~~~~~L~~L~L~~~~~~~~~-----~~----~~~l~~~~~~~~~L~~L 150 (683)
+.. .. ...+..++|+|++|++.++...... .+ ...+..+...+++|++|
T Consensus 53 ---~~~----------------~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L 110 (594)
T 2p1m_B 53 ---CYA----------------VS---PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEI 110 (594)
T ss_dssp ---TTS----------------SC---HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEE
T ss_pred ---ccc----------------cC---HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeE
Confidence 000 00 1133456677777777754322100 01 11234455667777777
Q ss_pred EeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEe-ceecCCCCccccCHHHHHH
Q 038791 151 DLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLV-ACTFDPRYIGFVNDETLSA 229 (683)
Q Consensus 151 ~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~~~l~~ 229 (683)
+|+++.+ ++..+..+. ..+++|++|+|+ .|..+++.++..+...|++|++|++ +|.+ .......+..
T Consensus 111 ~L~~~~~-~~~~~~~l~---~~~~~L~~L~L~---~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i-----~~~~~~~l~~ 178 (594)
T 2p1m_B 111 RLKRMVV-TDDCLELIA---KSFKNFKVLVLS---SCEGFSTDGLAAIAATCRNLKELDLRESDV-----DDVSGHWLSH 178 (594)
T ss_dssp EEESCBC-CHHHHHHHH---HHCTTCCEEEEE---SCEEEEHHHHHHHHHHCTTCCEEECTTCEE-----ECCCGGGGGG
T ss_pred EeeCcEE-cHHHHHHHH---HhCCCCcEEeCC---CcCCCCHHHHHHHHHhCCCCCEEeCcCCcc-----CCcchHHHHH
Confidence 7777764 232222222 123477777777 4545666667777777777777777 3321 1111222333
Q ss_pred HHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCC
Q 038791 230 IATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSS 309 (683)
Q Consensus 230 l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~ 309 (683)
+...+++|++|++++|. ..+++..+..+...+++|++|++++|..+++ ++.+...+++
T Consensus 179 ~~~~~~~L~~L~l~~~~------------------~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~----l~~~~~~~~~ 236 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLA------------------SEVSFSALERLVTRCPNLKSLKLNRAVPLEK----LATLLQRAPQ 236 (594)
T ss_dssp SCTTCCCCCEEECTTCC------------------SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH----HHHHHHHCTT
T ss_pred HhhcCCcCcEEEecccC------------------CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH----HHHHHhcCCc
Confidence 34456677777776542 1355566666666667777777766533322 4455556666
Q ss_pred CcEEEecCccc-------------------------ccccccccccc-cccCCCCcEEEeccCCCCCHHHHHHHHhcCCC
Q 038791 310 LKVLKLGQFHG-------------------------VCLAIGWQLDG-VSLCGGLESLSIKNCGDLSDMGLVAIGRGCRR 363 (683)
Q Consensus 310 L~~L~L~~c~~-------------------------l~~~~~~~~~~-l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~ 363 (683)
|+.|.++.|.. +.......+.. +..+++|++|++++|. +++..+..+...|++
T Consensus 237 L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPK 315 (594)
T ss_dssp CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTT
T ss_pred ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCC
Confidence 66666543321 11111112222 2368999999999988 999999888888999
Q ss_pred CcEEEecCCCCCCHHHHHHHHHhcccCccEEEee--------cccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHH
Q 038791 364 LIKFELEGCKNVTVDGLRTMAALRRETLVEMKIS--------CCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTES 435 (683)
Q Consensus 364 L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~--------~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~ 435 (683)
|++|++++| +++.++..++..+ ++|++|++. +|..++ ..++..+...|++|+.|.+.|+.++..++..
T Consensus 316 L~~L~l~~~--~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~l~-~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 316 LQRLWVLDY--IEDAGLEVLASTC-KDLRELRVFPSEPFVMEPNVALT-EQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp CCEEEEEGG--GHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCSSCCC-HHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred cCEEeCcCc--cCHHHHHHHHHhC-CCCCEEEEecCcccccccCCCCC-HHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence 999999998 6888898888888 999999994 455663 4557777777999999988899998888777
Q ss_pred Hhh---hccccCcc-----cC---C----cH---HHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeec
Q 038791 436 SES---KVRSFDLN-----EL---N----DE---DDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEV 497 (683)
Q Consensus 436 ~~~---~~~~l~l~-----~~---~----~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 497 (683)
+.. .++.+++. .+ . +. ..+..|++|+.+.+ ++.+++.....++..+++|+.|+++.
T Consensus 392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L----~~~l~~~~~~~l~~~~~~L~~L~L~~-- 465 (594)
T 2p1m_B 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL----SGLLTDKVFEYIGTYAKKMEMLSVAF-- 465 (594)
T ss_dssp HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC----CSSCCHHHHHHHHHHCTTCCEEEEES--
T ss_pred HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee----cCcccHHHHHHHHHhchhccEeeccC--
Confidence 653 44445544 11 1 11 22456777777777 22344444444444567788888743
Q ss_pred cccCCCccccCC-CCCCCcceeeecccCCCCCCCCCCCccchhh-hhccCccccccccccccc
Q 038791 498 GQLLTPLPIVGL-DDCPVLEEIRIKMEGDSRGRQKPSDRAFGLS-CLTRYPQLTKLRLEFGET 558 (683)
Q Consensus 498 ~~~l~~~~~~~L-~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 558 (683)
+.+++.+...+ .+|++|++|+|+ +|.. + ..++. ....+++|+.|+++.|..
T Consensus 466 -~~i~~~~~~~l~~~~~~L~~L~L~---~n~~-~-----~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 466 -AGDSDLGMHHVLSGCDSLRKLEIR---DCPF-G-----DKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -CCSSHHHHHHHHHHCTTCCEEEEE---SCSC-C-----HHHHHHTGGGGGGSSEEEEESSCC
T ss_pred -CCCcHHHHHHHHhcCCCcCEEECc---CCCC-c-----HHHHHHHHHhCCCCCEEeeeCCCC
Confidence 45555554444 567888888888 7731 0 12222 234577888888877654
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=2.6e-33 Score=316.52 Aligned_cols=452 Identities=14% Similarity=0.102 Sum_probs=313.2
Q ss_pred CCCcHHHHHHHHhcCCCCCccchhhhhhh-hhcccccccCCCCCCcccccCCCCCCCCCCCCCCccchhhhcccCCCCCC
Q 038791 7 NNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSSPTRP 85 (683)
Q Consensus 7 ~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~~~~~r~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~ 85 (683)
.+||||||.+||+||++++|++++++||| |+.+..+.+ +.+ .+.. +.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~---~~l---------------~~~~-------------~~- 61 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETR---EHV---------------TMAL-------------CY- 61 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHC---CEE---------------EESC-------------GG-
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccc---cEE---------------EEee-------------cc-
Confidence 48999999999999987999999999999 999974333 000 0000 00
Q ss_pred CCCCChhhhhhcccCccCHHHHHHHhccCCCccEEEecccccccc-----CCC----cccHHHHhhcCCCCCEEEeeCcc
Q 038791 86 PLTSGLPVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQ-----APL----GAEFIPLFEHCECLKSIDLSNFY 156 (683)
Q Consensus 86 ~~~~~l~~~~~l~~~~~~~~~L~~l~~~~~~L~~L~L~~~~~~~~-----~~~----~~~l~~~~~~~~~L~~L~Ls~~~ 156 (683)
.. ....+..++|+|++|+++++..... ..+ ...+..+...+++|++|+|+++.
T Consensus 62 ---------------~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 123 (592)
T 3ogk_B 62 ---------------TA---TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI 123 (592)
T ss_dssp ---------------GS---CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB
T ss_pred ---------------cc---ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE
Confidence 00 1234567788899999976432210 011 12345566688999999999886
Q ss_pred ccCCChhHHHhh-cCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEe-ceecCCCCccccCHHHHHHHHhcC
Q 038791 157 FWTEDLPPVLRA-YPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLV-ACTFDPRYIGFVNDETLSAIATNC 234 (683)
Q Consensus 157 ~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~~~l~~l~~~~ 234 (683)
+ ++..+..+.. ++ .+|++|+|+ .|.++++.++..+...|++|++|++ .|. ....+...+..+...+
T Consensus 124 i-~~~~~~~l~~~~~---~~L~~L~L~---~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-----~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 124 V-SDLDLDRLAKARA---DDLETLKLD---KCSGFTTDGLLSIVTHCRKIKTLLMEESS-----FSEKDGKWLHELAQHN 191 (592)
T ss_dssp C-CHHHHHHHHHHHG---GGCCEEEEE---SCEEEEHHHHHHHHHHCTTCSEEECTTCE-----EECCCSHHHHHHHHHC
T ss_pred e-cHHHHHHHHHhcc---ccCcEEECc---CCCCcCHHHHHHHHhhCCCCCEEECcccc-----ccCcchhHHHHHHhcC
Confidence 5 3334344433 33 149999999 5556778888888888999999999 442 1112333466667788
Q ss_pred CCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEE
Q 038791 235 PKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLK 314 (683)
Q Consensus 235 ~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~ 314 (683)
++|++|+++++.. ..++..++..++..+++|++|++++| .+.+ +......+++|+.|.
T Consensus 192 ~~L~~L~L~~n~~-----------------~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~----l~~~~~~~~~L~~L~ 249 (592)
T 3ogk_B 192 TSLEVLNFYMTEF-----------------AKISPKDLETIARNCRSLVSVKVGDF-EILE----LVGFFKAAANLEEFC 249 (592)
T ss_dssp CCCCEEECTTCCC-----------------SSCCHHHHHHHHHHCTTCCEEECSSC-BGGG----GHHHHHHCTTCCEEE
T ss_pred CCccEEEeeccCC-----------------CccCHHHHHHHHhhCCCCcEEeccCc-cHHH----HHHHHhhhhHHHhhc
Confidence 9999999875421 12456778888888899999999885 3432 445667788888888
Q ss_pred ecCcccccc---------------------c-ccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 038791 315 LGQFHGVCL---------------------A-IGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGC 372 (683)
Q Consensus 315 L~~c~~l~~---------------------~-~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c 372 (683)
++.+..... . ....+..+..+++|++|++++|. +++..+..+...|++|++|+++
T Consensus 250 l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-- 326 (592)
T 3ogk_B 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-- 326 (592)
T ss_dssp ECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--
T ss_pred ccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--
Confidence 864322100 0 01122334578899999999988 9999998877889999999998
Q ss_pred CCCCHHHHHHHHHhcccCccEEEeec----------ccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhh---
Q 038791 373 KNVTVDGLRTMAALRRETLVEMKISC----------CKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESK--- 439 (683)
Q Consensus 373 ~~it~~~l~~l~~~~~~~L~~L~l~~----------c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~--- 439 (683)
..+++.++..+...| ++|++|++++ |..++ ..++..+...|++|+.|++.|+.+++.++..+...
T Consensus 327 ~~~~~~~l~~~~~~~-~~L~~L~L~~g~~~~~~~~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 404 (592)
T 3ogk_B 327 NVIGDRGLEVLAQYC-KQLKRLRIERGADEQGMEDEEGLVS-QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404 (592)
T ss_dssp GGGHHHHHHHHHHHC-TTCCEEEEECCCCSSTTSSTTCCCC-HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred CccCHHHHHHHHHhC-CCCCEEEeecCccccccccccCccC-HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence 337899999998888 9999999995 88884 44577777889999999999999999888887553
Q ss_pred ccccCcc------cCCc------H-HHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccc
Q 038791 440 VRSFDLN------ELND------E-DDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPI 506 (683)
Q Consensus 440 ~~~l~l~------~~~~------~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 506 (683)
+..+++. .+.. . ..+..|++|+.+.+.... +.+++.....++..+++|+.|+++ ++.+++.+.
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~-~~l~~~~~~~~~~~~~~L~~L~L~---~n~l~~~~~ 480 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ-GGLTDLGLSYIGQYSPNVRWMLLG---YVGESDEGL 480 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG-GGCCHHHHHHHHHSCTTCCEEEEC---SCCSSHHHH
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC-CCccHHHHHHHHHhCccceEeecc---CCCCCHHHH
Confidence 4444442 2211 1 335678899999884322 123455555566668999999975 366666554
Q ss_pred cC-CCCCCCcceeeecccCCCCCCCCCCCccch-hhhhccCcccccccccccccce
Q 038791 507 VG-LDDCPVLEEIRIKMEGDSRGRQKPSDRAFG-LSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 507 ~~-L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~g 560 (683)
.. +.+|++|++|+|+ +|. ++ .-+ +.....+++|+.|+++.|.+++
T Consensus 481 ~~~~~~~~~L~~L~l~---~n~-l~-----~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMR---GCC-FS-----ERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHTCCTTCCEEEEE---SCC-CB-----HHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHhcCcccCeeecc---CCC-Cc-----HHHHHHHHHhcCccCeeECcCCcCCH
Confidence 44 5889999999999 993 11 112 2334578999999999888664
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.94 E-value=4e-27 Score=246.15 Aligned_cols=294 Identities=17% Similarity=0.180 Sum_probs=200.8
Q ss_pred CCcCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhcccccccCCCCCCcccccCCCCCCCCCCCCCCccchhhhcccCC
Q 038791 3 ATTINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQRAIPAHDPYLFQIGHGPGHFQPLSVGPPLAHASHALRSS 81 (683)
Q Consensus 3 ~~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~~~~~r~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (683)
...|++||+||+.+||+|| +.+|+.++++||| |++++.++. .|+...+...
T Consensus 6 ~~~~~~LP~eil~~If~~L-~~~d~~~~~~vc~~W~~~~~~~~-----------~~~~l~l~~~---------------- 57 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLASDES-----------LWQTLDLTGK---------------- 57 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTS-CHHHHHHTTSSCHHHHHHHTCST-----------TSSEEECTTC----------------
T ss_pred cCChhhCCHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCch-----------hheeeccccc----------------
Confidence 4679999999999999999 9999999999999 999985322 1221111100
Q ss_pred CCCCCCCCChhhhhhcccCccCHHHHHHHhccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCC
Q 038791 82 PTRPPLTSGLPVNHVSHHLLSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTED 161 (683)
Q Consensus 82 ~~~~~~~~~l~~~~~l~~~~~~~~~L~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~ 161 (683)
...+..+..+. .++++.|++.++.... .... +..+++|++|++++|.+....
T Consensus 58 -------------------~~~~~~~~~~~--~~~l~~L~l~~n~l~~------~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 58 -------------------NLHPDVTGRLL--SQGVIAFRCPRSFMDQ------PLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp -------------------BCCHHHHHHHH--HTTCSEEECTTCEECS------CCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred -------------------cCCHHHHHhhh--hccceEEEcCCccccc------cchh-hccCCCCCEEEccCCCcCHHH
Confidence 11222222221 1578888888654321 1111 346788888888888753222
Q ss_pred hhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEe-ceecCCCCccccCHHHHHHHHhcCCCCcEE
Q 038791 162 LPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLV-ACTFDPRYIGFVNDETLSAIATNCPKLTLL 240 (683)
Q Consensus 162 ~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L 240 (683)
++..+..++ +|++|+|++|. +++.....+ ..+++|++|++ +| ..+++.++..+...+++|++|
T Consensus 110 ~~~~~~~~~----~L~~L~L~~~~----l~~~~~~~l-~~~~~L~~L~L~~~-------~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 110 LHGILSQCS----KLQNLSLEGLR----LSDPIVNTL-AKNSNLVRLNLSGC-------SGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp HHHHHTTBC----CCSEEECTTCB----CCHHHHHHH-TTCTTCSEEECTTC-------BSCCHHHHHHHHHHCTTCCEE
T ss_pred HHHHHhhCC----CCCEEeCcCcc----cCHHHHHHH-hcCCCCCEEECCCC-------CCCCHHHHHHHHhcCCCCCEE
Confidence 555555554 88888888553 666555444 56888888888 33 267777777777788888888
Q ss_pred eecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCC-CCcEEEecccc-CcCCChhHHHHHHhcCCCCcEEEecCc
Q 038791 241 HLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLP-LLEELVLDVCK-NVRDSGPVLEVLKSKCSSLKVLKLGQF 318 (683)
Q Consensus 241 ~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~-~L~~L~L~~c~-~l~~~~~~l~~l~~~~~~L~~L~L~~c 318 (683)
++++| ..+++.++...+..++ +|++|++++|. .+++.+ +......+++|++|++++|
T Consensus 174 ~l~~~-------------------~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~--l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 174 NLSWC-------------------FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD--LSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp ECCCC-------------------TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH--HHHHHHHCTTCSEEECTTC
T ss_pred cCCCC-------------------CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHH--HHHHHhhCCCCCEEeCCCC
Confidence 88875 2466677777777888 88888888865 455443 6666777888888888887
Q ss_pred ccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeec
Q 038791 319 HGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISC 398 (683)
Q Consensus 319 ~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~ 398 (683)
..++ +..+..++.+++|++|++++|..+++.++..+.. +++|++|++++| +++.++..+...+ +. |++++
T Consensus 233 ~~l~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~--i~~~~~~~l~~~l-~~---L~l~~ 302 (336)
T 2ast_B 233 VMLK---NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPDGTLQLLKEAL-PH---LQINC 302 (336)
T ss_dssp TTCC---GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS--SCTTCHHHHHHHS-TT---SEESC
T ss_pred CcCC---HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc--cCHHHHHHHHhhC-cc---eEEec
Confidence 6443 2455667778888888888886677777666655 888888888888 7777777665443 44 44553
Q ss_pred c
Q 038791 399 C 399 (683)
Q Consensus 399 c 399 (683)
|
T Consensus 303 n 303 (336)
T 2ast_B 303 S 303 (336)
T ss_dssp C
T ss_pred c
Confidence 3
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.7e-24 Score=244.41 Aligned_cols=388 Identities=17% Similarity=0.189 Sum_probs=264.6
Q ss_pred CccCHHHHHHHhccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEE
Q 038791 100 LLSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCL 179 (683)
Q Consensus 100 ~~~~~~~L~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L 179 (683)
..+++..+..+...|++|++|++.+|... ....+..++..|++|++|++++|.+. +..+..+..++..+++|++|
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~L~L~~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~i~-~~~~~~l~~~~~~~~~L~~L 189 (594)
T 2p1m_B 115 MVVTDDCLELIAKSFKNFKVLVLSSCEGF----STDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSL 189 (594)
T ss_dssp CBCCHHHHHHHHHHCTTCCEEEEESCEEE----EHHHHHHHHHHCTTCCEEECTTCEEE-CCCGGGGGGSCTTCCCCCEE
T ss_pred cEEcHHHHHHHHHhCCCCcEEeCCCcCCC----CHHHHHHHHHhCCCCCEEeCcCCccC-CcchHHHHHHhhcCCcCcEE
Confidence 36788888888888999999999977533 13446777789999999999999864 44445566777788899999
Q ss_pred EeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCC------------
Q 038791 180 NLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSS------------ 247 (683)
Q Consensus 180 ~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~------------ 247 (683)
+++++. ..+++..+..+...+++|++|+++. ......+..+...+++|++|++..|..
T Consensus 190 ~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~--------~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 190 NISCLA--SEVSFSALERLVTRCPNLKSLKLNR--------AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp ECTTCC--SCCCHHHHHHHHHHCTTCCEEECCT--------TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred EecccC--CcCCHHHHHHHHHhCCCCcEEecCC--------CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 999543 3688889999989999999999931 123444777777999999998765521
Q ss_pred -------CCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCccc
Q 038791 248 -------LANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHG 320 (683)
Q Consensus 248 -------l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~ 320 (683)
+.... + ...+....++.+...+++|++|++++|. +++.+ +..+...+++|++|++.+|
T Consensus 260 ~l~~~~~L~~Ls------~----~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~--l~~~~~~~~~L~~L~l~~~-- 324 (594)
T 2p1m_B 260 ALSGCKELRCLS------G----FWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYD--LVKLLCQCPKLQRLWVLDY-- 324 (594)
T ss_dssp HHHTCTTCCEEE------C----CBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHH--HHHHHTTCTTCCEEEEEGG--
T ss_pred HHhcCCCccccc------C----CcccchhhHHHHHHhhCCCCEEEccCCC-CCHHH--HHHHHhcCCCcCEEeCcCc--
Confidence 11100 0 0122333444445567888888888865 65443 5666677888888888875
Q ss_pred ccccccccccccc-cCCCCcEEEe--------ccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCc
Q 038791 321 VCLAIGWQLDGVS-LCGGLESLSI--------KNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETL 391 (683)
Q Consensus 321 l~~~~~~~~~~l~-~~~~L~~L~L--------~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L 391 (683)
+. +.++..+. .+++|++|++ ..|..+++.++..++.+|++|++|.+. |..+++.++..++..+ ++|
T Consensus 325 ~~---~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~-~~L 399 (594)
T 2p1m_B 325 IE---DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNR-PNM 399 (594)
T ss_dssp GH---HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHC-TTC
T ss_pred cC---HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhC-CCc
Confidence 22 23344444 5788888888 345568888888888778888888664 4448888888887777 888
Q ss_pred cEEEee-----cccccCh---hhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccc
Q 038791 392 VEMKIS-----CCKQLGA---VASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKF 463 (683)
Q Consensus 392 ~~L~l~-----~c~~l~~---~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l 463 (683)
++|+++ +|..++. ..++..+...|++|+.|++++ .+++.++..+.. .+++|+.+
T Consensus 400 ~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~-----------------~~~~L~~L 461 (594)
T 2p1m_B 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT-----------------YAKKMEML 461 (594)
T ss_dssp CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH-----------------HCTTCCEE
T ss_pred ceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH-----------------hchhccEe
Confidence 888888 5666642 345666677788888888864 555555544322 35667777
Q ss_pred cccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccC-CCCCCCcceeeecccCCCCCCCCCCCccchhhhh
Q 038791 464 CLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVG-LDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCL 542 (683)
Q Consensus 464 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~-L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l 542 (683)
.+..+. +++.+...+...+++|+.|+++. +.+++.+... +..|++|++|+++ +|+. ..-+...+
T Consensus 462 ~L~~~~---i~~~~~~~l~~~~~~L~~L~L~~---n~~~~~~~~~~~~~l~~L~~L~l~---~~~~------~~~~~~~l 526 (594)
T 2p1m_B 462 SVAFAG---DSDLGMHHVLSGCDSLRKLEIRD---CPFGDKALLANASKLETMRSLWMS---SCSV------SFGACKLL 526 (594)
T ss_dssp EEESCC---SSHHHHHHHHHHCTTCCEEEEES---CSCCHHHHHHTGGGGGGSSEEEEE---SSCC------BHHHHHHH
T ss_pred eccCCC---CcHHHHHHHHhcCCCcCEEECcC---CCCcHHHHHHHHHhCCCCCEEeee---CCCC------CHHHHHHH
Confidence 774332 33333333334489999999853 5556655543 4679999999999 9942 12234444
Q ss_pred -ccCcccccccccc
Q 038791 543 -TRYPQLTKLRLEF 555 (683)
Q Consensus 543 -~~l~~L~~L~l~~ 555 (683)
..+|+|+...+..
T Consensus 527 ~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 527 GQKMPKLNVEVIDE 540 (594)
T ss_dssp HHHCTTEEEEEECS
T ss_pred HHhCCCCEEEEecC
Confidence 4567776555543
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=5.2e-24 Score=240.36 Aligned_cols=398 Identities=15% Similarity=0.154 Sum_probs=265.1
Q ss_pred ccCHHHHHHHhccCCC-ccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEE
Q 038791 101 LSDTVTLEILLPQWPG-LRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCL 179 (683)
Q Consensus 101 ~~~~~~L~~l~~~~~~-L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L 179 (683)
.+++..+..+...+++ |++|+|.++... ....+..+...|++|++|+|++|.+.+ ....++..++..+++|++|
T Consensus 123 ~i~~~~~~~l~~~~~~~L~~L~L~~~~~~----~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~~~~~L~~L 197 (592)
T 3ogk_B 123 IVSDLDLDRLAKARADDLETLKLDKCSGF----TTDGLLSIVTHCRKIKTLLMEESSFSE-KDGKWLHELAQHNTSLEVL 197 (592)
T ss_dssp BCCHHHHHHHHHHHGGGCCEEEEESCEEE----EHHHHHHHHHHCTTCSEEECTTCEEEC-CCSHHHHHHHHHCCCCCEE
T ss_pred EecHHHHHHHHHhccccCcEEECcCCCCc----CHHHHHHHHhhCCCCCEEECccccccC-cchhHHHHHHhcCCCccEE
Confidence 5677777777777777 999999877633 244566777889999999999997643 3223344444455699999
Q ss_pred EeccCCCCCCCCHHHHHHHHhhCCCCceEEe-ceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCC
Q 038791 180 NLLTTSFTEGFKAQEIREITAACPSLNKLLV-ACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSD 258 (683)
Q Consensus 180 ~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~ 258 (683)
++++|. +.++....+..++..|++|++|++ +| .+.. +......+++|++|+++++.............
T Consensus 198 ~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~--------~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 198 NFYMTE-FAKISPKDLETIARNCRSLVSVKVGDF--------EILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp ECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSC--------BGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred EeeccC-CCccCHHHHHHHHhhCCCCcEEeccCc--------cHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 999774 445667888999899999999999 33 2222 33445688999999997532211100000000
Q ss_pred CC----cc-CCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCccccccccccccccc-
Q 038791 259 GF----TA-EDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGV- 332 (683)
Q Consensus 259 g~----~~-~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l- 332 (683)
+. .. .-..+....++.++..+++|++|++++|. +++.+ +..++..+++|++|++.++ + .+.++..+
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~--~~~~~~~~~~L~~L~L~~~--~---~~~~l~~~~ 338 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETED--HCTLIQKCPNLEVLETRNV--I---GDRGLEVLA 338 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHH--HHHHHTTCTTCCEEEEEGG--G---HHHHHHHHH
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHH--HHHHHHhCcCCCEEeccCc--c---CHHHHHHHH
Confidence 00 00 00112334455667778999999999975 65544 5566788999999999832 2 22344444
Q ss_pred ccCCCCcEEEecc----------CCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeec---c
Q 038791 333 SLCGGLESLSIKN----------CGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISC---C 399 (683)
Q Consensus 333 ~~~~~L~~L~L~~----------~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~---c 399 (683)
..|++|++|++++ |..+++.++..+...|++|++|+++ |..+++.++..++..+ ++|++|++++ |
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYL-KNLCDFRLVLLDRE 416 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHC-CSCCEEEEEECSCC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhC-CCCcEEEEeecCCC
Confidence 4789999999995 7789999999988889999999994 4459999999998877 9999999984 5
Q ss_pred cccChh---hHHHHHHhcCCCccEEEEe-ee-cCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCcccc
Q 038791 400 KQLGAV---ASCKALDLVRDRIEKLHID-CV-WDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQ 474 (683)
Q Consensus 400 ~~l~~~---~~l~~l~~~~~~L~~L~L~-c~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 474 (683)
+.+++. .++..+...|++|+.|+++ |. .+++.++..+. ..+++|+.+.+..+. ++
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~-----------------~~~~~L~~L~L~~n~---l~ 476 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG-----------------QYSPNVRWMLLGYVG---ES 476 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH-----------------HSCTTCCEEEECSCC---SS
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH-----------------HhCccceEeeccCCC---CC
Confidence 566542 3566777789999999997 32 25555555432 236678888774332 33
Q ss_pred ccccccccccCCCCceeeeeeeccccCCCccccC-CCCCCCcceeeecccCCCCCCCCCCCccchhhhh-ccCccccccc
Q 038791 475 IKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVG-LDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCL-TRYPQLTKLR 552 (683)
Q Consensus 475 ~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~-L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l-~~l~~L~~L~ 552 (683)
+.+.......+++|+.|+++. +.+++.+... ...+++|++|+++ +|+ ++ ..+...+ ..+|.|....
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~---n~l~~~~~~~~~~~l~~L~~L~ls---~n~-it-----~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRG---CCFSERAIAAAVTKLPSLRYLWVQ---GYR-AS-----MTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEES---CCCBHHHHHHHHHHCSSCCEEEEE---SCB-CC-----TTCTTGGGGCCTTEEEEE
T ss_pred HHHHHHHHhcCcccCeeeccC---CCCcHHHHHHHHHhcCccCeeECc---CCc-CC-----HHHHHHHHHhCCCcEEEE
Confidence 333322324589999999753 4465544433 4678999999999 995 32 2222223 3467666655
Q ss_pred cccc
Q 038791 553 LEFG 556 (683)
Q Consensus 553 l~~~ 556 (683)
++.+
T Consensus 545 ~~~~ 548 (592)
T 3ogk_B 545 IPSR 548 (592)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 5443
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=8.7e-26 Score=262.00 Aligned_cols=206 Identities=20% Similarity=0.243 Sum_probs=96.7
Q ss_pred hhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCcc
Q 038791 141 FEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIG 220 (683)
Q Consensus 141 ~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~ 220 (683)
+..+++|++|++++|.+.. ..+. ..+++|++|+|++|.....+. . +..+++|++|+++ .+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~-~~~~------~~l~~L~~L~Ls~n~l~~~~~-----~-l~~l~~L~~L~Ls-------~n 233 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISG-DVDV------SRCVNLEFLDVSSNNFSTGIP-----F-LGDCSALQHLDIS-------GN 233 (768)
T ss_dssp TTCCTTCCEEECCSSEEES-CCBC------TTCTTCCEEECCSSCCCSCCC-----B-CTTCCSCCEEECC-------SS
T ss_pred hccCCCCCEEECCCCcccc-cCCc------ccCCcCCEEECcCCcCCCCCc-----c-cccCCCCCEEECc-------CC
Confidence 4455555555555554421 1110 233466666666554222121 1 3556677777773 12
Q ss_pred ccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHH
Q 038791 221 FVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVL 300 (683)
Q Consensus 221 ~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l 300 (683)
.+++.....+ ..+++|++|++++|.-....+ . ..+++|++|++++| .+++.. .
T Consensus 234 ~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~----------------~-------~~l~~L~~L~L~~n-~l~~~i--p 286 (768)
T 3rgz_A 234 KLSGDFSRAI-STCTELKLLNISSNQFVGPIP----------------P-------LPLKSLQYLSLAEN-KFTGEI--P 286 (768)
T ss_dssp CCCSCHHHHT-TTCSSCCEEECCSSCCEESCC----------------C-------CCCTTCCEEECCSS-EEEESC--C
T ss_pred cCCCcccHHH-hcCCCCCEEECCCCcccCccC----------------c-------cccCCCCEEECcCC-ccCCcc--C
Confidence 3443333333 367777777776653211100 0 13555666666553 232110 0
Q ss_pred HHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHH
Q 038791 301 EVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGL 380 (683)
Q Consensus 301 ~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l 380 (683)
..+...+++|++|+++++. ..+..+..++.+++|++|++++|. +++.........+++|++|++++|. +++...
T Consensus 287 ~~~~~~~~~L~~L~Ls~n~----l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~-l~~~~p 360 (768)
T 3rgz_A 287 DFLSGACDTLTGLDLSGNH----FYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNE-FSGELP 360 (768)
T ss_dssp CCSCTTCTTCSEEECCSSE----EEECCCGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSE-EEECCC
T ss_pred HHHHhhcCcCCEEECcCCc----CCCccchHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCc-cCcccc
Confidence 1111224666666666532 223444556666677777776653 3322122212236667777776665 332222
Q ss_pred HHHHHhcccCccEEEeeccc
Q 038791 381 RTMAALRRETLVEMKISCCK 400 (683)
Q Consensus 381 ~~l~~~~~~~L~~L~l~~c~ 400 (683)
..+.... ++|+.|++++|.
T Consensus 361 ~~l~~l~-~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 361 ESLTNLS-ASLLTLDLSSNN 379 (768)
T ss_dssp TTHHHHT-TTCSEEECCSSE
T ss_pred HHHHhhh-cCCcEEEccCCC
Confidence 2333331 256666665554
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2e-26 Score=267.35 Aligned_cols=431 Identities=17% Similarity=0.146 Sum_probs=198.2
Q ss_pred ccCCCccEEEeccccccccCCCcccHHH--HhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCC
Q 038791 112 PQWPGLRHVKLVRWHQRLQAPLGAEFIP--LFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEG 189 (683)
Q Consensus 112 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~ 189 (683)
..+++|++|+|+++.. .+.++. .+..+++|++|++++|.+. ...+.. +...+++|++|+|++|... +
T Consensus 97 ~~l~~L~~L~Ls~n~l------~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~---~~~~l~~L~~L~Ls~n~l~-~ 165 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSL------SGPVTTLTSLGSCSGLKFLNVSSNTLD-FPGKVS---GGLKLNSLEVLDLSANSIS-G 165 (768)
T ss_dssp CCCTTCCEEECCSSEE------EEEGGGGGGGGGCTTCCEEECCSSEEE-CCSSCC---SCCCCTTCSEEECCSSCCE-E
T ss_pred ccCCCCCEEECCCCcC------CCcCCChHHHhCCCCCCEEECcCCccC-CcCCHH---HhccCCCCCEEECCCCccC-C
Confidence 5668888888886652 333444 6778889999999888763 222221 1123458999999876521 1
Q ss_pred CCHHHHHHHHhhCCCCceEEe-ceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcC
Q 038791 190 FKAQEIREITAACPSLNKLLV-ACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVS 268 (683)
Q Consensus 190 i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt 268 (683)
..... ...+..+++|++|++ +|. +++.. .. ..+++|++|++++|.-...
T Consensus 166 ~~~~~-~~~~~~l~~L~~L~Ls~n~--------l~~~~--~~-~~l~~L~~L~Ls~n~l~~~------------------ 215 (768)
T 3rgz_A 166 ANVVG-WVLSDGCGELKHLAISGNK--------ISGDV--DV-SRCVNLEFLDVSSNNFSTG------------------ 215 (768)
T ss_dssp ETHHH-HHHTTCCTTCCEEECCSSE--------EESCC--BC-TTCTTCCEEECCSSCCCSC------------------
T ss_pred cCChh-hhhhccCCCCCEEECCCCc--------ccccC--Cc-ccCCcCCEEECcCCcCCCC------------------
Confidence 11111 122467888888888 332 21110 01 4778888888887632110
Q ss_pred HHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCC
Q 038791 269 REGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGD 348 (683)
Q Consensus 269 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~ 348 (683)
++. +..+++|++|++++| .+++. ++.....+++|++|++++|.-. +..+. ..+++|++|++++|.
T Consensus 216 ---~~~-l~~l~~L~~L~Ls~n-~l~~~---~~~~l~~l~~L~~L~Ls~n~l~----~~~~~--~~l~~L~~L~L~~n~- 280 (768)
T 3rgz_A 216 ---IPF-LGDCSALQHLDISGN-KLSGD---FSRAISTCTELKLLNISSNQFV----GPIPP--LPLKSLQYLSLAENK- 280 (768)
T ss_dssp ---CCB-CTTCCSCCEEECCSS-CCCSC---HHHHTTTCSSCCEEECCSSCCE----ESCCC--CCCTTCCEEECCSSE-
T ss_pred ---Ccc-cccCCCCCEEECcCC-cCCCc---ccHHHhcCCCCCEEECCCCccc----CccCc--cccCCCCEEECcCCc-
Confidence 111 344666666666663 44433 3344455666666666654321 11111 144555555555543
Q ss_pred CCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecC
Q 038791 349 LSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWD 428 (683)
Q Consensus 349 lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~ 428 (683)
+++.....+...|++|++|++++|. +++.....+. .+ ++|++|++++|...+..+ ......+++|+.|+++.+.+
T Consensus 281 l~~~ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~-~l-~~L~~L~L~~n~l~~~ip--~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 281 FTGEIPDFLSGACDTLTGLDLSGNH-FYGAVPPFFG-SC-SLLESLALSSNNFSGELP--MDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp EEESCCCCSCTTCTTCSEEECCSSE-EEECCCGGGG-GC-TTCCEEECCSSEEEEECC--HHHHTTCTTCCEEECCSSEE
T ss_pred cCCccCHHHHhhcCcCCEEECcCCc-CCCccchHHh-cC-CCccEEECCCCcccCcCC--HHHHhcCCCCCEEeCcCCcc
Confidence 2222222222223555555555554 3222112222 12 555555555443321111 01122345555555553332
Q ss_pred Ch---hhHHHHhhhccccCcccC---CcH-HHHhh--hhhhccccccCCCCccccccccccccccCCCCceeeeeeeccc
Q 038791 429 GL---ELTESSESKVRSFDLNEL---NDE-DDELG--LRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQ 499 (683)
Q Consensus 429 ~~---~~~~~~~~~~~~l~l~~~---~~~-~~~~~--~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 499 (683)
+. ..+......+..+++... +.. ..+.. +++|+.+.+..+. +++..+..++ .+++|+.|+++ ++
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~---l~~~~p~~l~-~l~~L~~L~Ls---~N 428 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG---FTGKIPPTLS-NCSELVSLHLS---FN 428 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE---EEEECCGGGG-GCTTCCEEECC---SS
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc---cccccCHHHh-cCCCCCEEECc---CC
Confidence 21 112222112333332221 100 01111 2334444432111 1111121111 24455555542 23
Q ss_pred cCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHh
Q 038791 500 LLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFF 579 (683)
Q Consensus 500 ~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~ 579 (683)
.+++..+..+.++++|++|+++ +|... ...+..+..+++|+.|+++.|.+.|.. |..+.+++.|+.++
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~---~n~l~------~~~p~~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLW---LNMLE------GEIPQELMYVKTLETLILDFNDLTGEI---PSGLSNCTNLNWIS 496 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECC---SSCCC------SCCCGGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEE
T ss_pred cccCcccHHHhcCCCCCEEECC---CCccc------CcCCHHHcCCCCceEEEecCCcccCcC---CHHHhcCCCCCEEE
Confidence 4443333444555555555555 44211 011334444555555555555544422 33344444443333
Q ss_pred hcc----------ccee-eeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 580 FNG----------IGNL-RLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 580 l~~----------~~~l-~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
+++ ++.+ +|..| ++..|++++.+|.. ++.|++|+.|++++|.-
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L------~L~~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAIL------KLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEE------ECCSSCCEEECCGG--GGGCTTCCEEECCSSEE
T ss_pred ccCCccCCcCChHHhcCCCCCEE------ECCCCcccCcCCHH--HcCCCCCCEEECCCCcc
Confidence 322 1222 23333 23557777777776 77778888888877753
No 8
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=5.8e-24 Score=232.28 Aligned_cols=344 Identities=18% Similarity=0.168 Sum_probs=210.9
Q ss_pred CCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCC---ChhHHHhhcCccCCCccEEEeccCCCCCCCC
Q 038791 115 PGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTE---DLPPVLRAYPEKSANLTCLNLLTTSFTEGFK 191 (683)
Q Consensus 115 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~---~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~ 191 (683)
++|++|+++++... ......++..+++|++|++++|.+.+. .++..+..+ ++|++|+|++|. ++
T Consensus 3 ~~l~~L~Ls~~~l~-----~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~----~~L~~L~Ls~n~----l~ 69 (461)
T 1z7x_W 3 LDIQSLDIQCEELS-----DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN----PALAELNLRSNE----LG 69 (461)
T ss_dssp EEEEEEEEESCCCC-----HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC----TTCCEEECTTCC----CH
T ss_pred ccceehhhhhcccC-----chhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhC----CCcCEEeCCCCc----CC
Confidence 56788888754421 333455677888888888888876322 223333333 488888888654 66
Q ss_pred HHHHHHHHhhCC----CCceEEeceecCCCCccccCHH---HHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCC
Q 038791 192 AQEIREITAACP----SLNKLLVACTFDPRYIGFVNDE---TLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAED 264 (683)
Q Consensus 192 ~~~l~~l~~~~~----~L~~L~L~c~~~~~~~~~l~~~---~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~ 264 (683)
+.++..+...++ +|++|+++ .+.+++. .+......+++|++|++++|
T Consensus 70 ~~~~~~l~~~l~~~~~~L~~L~L~-------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n------------------- 123 (461)
T 1z7x_W 70 DVGVHCVLQGLQTPSCKIQKLSLQ-------NCCLTGAGCGVLSSTLRTLPTLQELHLSDN------------------- 123 (461)
T ss_dssp HHHHHHHHHTTCSTTCCCCEEECT-------TSCCBGGGHHHHHHHTTSCTTCCEEECCSS-------------------
T ss_pred hHHHHHHHHHHhhCCCceeEEEcc-------CCCCCHHHHHHHHHHHccCCceeEEECCCC-------------------
Confidence 777777777676 68888883 1245543 33333457888888888764
Q ss_pred CCcCHHHHHHHHhC----CCCCcEEEeccccCcCCCh-hHHHHHHhcCCCCcEEEecCcccccccccccccccc-----c
Q 038791 265 ASVSREGLIQLFSG----LPLLEELVLDVCKNVRDSG-PVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVS-----L 334 (683)
Q Consensus 265 ~~lt~~~l~~l~~~----~~~L~~L~L~~c~~l~~~~-~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~-----~ 334 (683)
.+++.++..+... .++|++|++++| .+++.+ ..+......+++|++|+++++. +. +.++..++ .
T Consensus 124 -~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~---~~~~~~l~~~l~~~ 197 (461)
T 1z7x_W 124 -LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-IN---EAGVRVLCQGLKDS 197 (461)
T ss_dssp -BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CH---HHHHHHHHHHHHHS
T ss_pred -cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cc---hHHHHHHHHHHhcC
Confidence 4666665554432 456888888885 555443 1244455667888888888754 22 23333332 3
Q ss_pred CCCCcEEEeccCCCCCHHHHHHH---HhcCCCCcEEEecCCCCCCHHHHHHHHHh----cccCccEEEeecccccChhh-
Q 038791 335 CGGLESLSIKNCGDLSDMGLVAI---GRGCRRLIKFELEGCKNVTVDGLRTMAAL----RRETLVEMKISCCKQLGAVA- 406 (683)
Q Consensus 335 ~~~L~~L~L~~~~~lt~~~l~~l---~~~~~~L~~L~L~~c~~it~~~l~~l~~~----~~~~L~~L~l~~c~~l~~~~- 406 (683)
.++|++|++++|. +++.+...+ ...+++|++|++++|. +++.++..++.. + ++|++|++++|. +++..
T Consensus 198 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~-~~L~~L~L~~n~-l~~~~~ 273 (461)
T 1z7x_W 198 PCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPS-SRLRTLWIWECG-ITAKGC 273 (461)
T ss_dssp CCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTT-CCCCEEECTTSC-CCHHHH
T ss_pred CCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCC-CCceEEECcCCC-CCHHHH
Confidence 5688888888875 776553332 2347888888888886 788777766542 3 788888888774 32221
Q ss_pred -HHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccC
Q 038791 407 -SCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTW 485 (683)
Q Consensus 407 -~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 485 (683)
.+......+++|+.|+++++.+++.+...++..+. ...
T Consensus 274 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-----------------------------------------~~~ 312 (461)
T 1z7x_W 274 GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL-----------------------------------------EPG 312 (461)
T ss_dssp HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT-----------------------------------------STT
T ss_pred HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc-----------------------------------------cCC
Confidence 12333345788888888866665555554433222 123
Q ss_pred CCCceeeeeeeccccCCCcccc----CCCCCCCcceeeecccCCCCCCCCCCCccchhhhhcc-----Cccccccccccc
Q 038791 486 KGLKCLSIWIEVGQLLTPLPIV----GLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTR-----YPQLTKLRLEFG 556 (683)
Q Consensus 486 ~~L~~L~L~~~~~~~l~~~~~~----~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~-----l~~L~~L~l~~~ 556 (683)
++|+.|+++ ++.+++.... .+..+++|++|+++ +|. ++ ..++..+.. .++|+.|+++.|
T Consensus 313 ~~L~~L~L~---~n~l~~~~~~~l~~~l~~~~~L~~L~Ls---~n~-i~-----~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 313 CQLESLWVK---SCSFTAACCSHFSSVLAQNRFLLELQIS---NNR-LE-----DAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp CCCCEEECT---TSCCBGGGHHHHHHHHHHCSSCCEEECC---SSB-CH-----HHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred ccceeeEcC---CCCCchHHHHHHHHHHhhCCCccEEEcc---CCc-cc-----cccHHHHHHHHcCCCCceEEEECCCC
Confidence 578888863 3555554322 24567888888888 772 11 122333332 567888887777
Q ss_pred ccce
Q 038791 557 ETIG 560 (683)
Q Consensus 557 ~~~g 560 (683)
.+.+
T Consensus 381 ~i~~ 384 (461)
T 1z7x_W 381 DVSD 384 (461)
T ss_dssp CCCH
T ss_pred CCCh
Confidence 6543
No 9
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=1.3e-22 Score=221.61 Aligned_cols=365 Identities=17% Similarity=0.146 Sum_probs=249.6
Q ss_pred ccCHHHHHHHhccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEE
Q 038791 101 LSDTVTLEILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLN 180 (683)
Q Consensus 101 ~~~~~~L~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~ 180 (683)
.+++..+..+...+++|++|+++++.... .....+...+..+++|++|+++++.+.+.........++...++|++|+
T Consensus 14 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 91 (461)
T 1z7x_W 14 ELSDARWAELLPLLQQCQVVRLDDCGLTE--ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 91 (461)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEESSCCCH--HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred ccCchhHHHHHhhcCCccEEEccCCCCCH--HHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEE
Confidence 45566677778889999999999776321 0112456778889999999999987643223233333432233799999
Q ss_pred eccCCCCCCCCH---HHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhc----CCCCcEEeecCCCCCCCCCC
Q 038791 181 LLTTSFTEGFKA---QEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATN----CPKLTLLHLVDTSSLANERG 253 (683)
Q Consensus 181 L~~~~~c~~i~~---~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~----~~~L~~L~L~~c~~l~~~~~ 253 (683)
|++|. +++ ..+...+..+++|++|+++ .+.+++.++..++.. .++|++|++++|
T Consensus 92 L~~n~----i~~~~~~~l~~~l~~~~~L~~L~Ls-------~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-------- 152 (461)
T 1z7x_W 92 LQNCC----LTGAGCGVLSSTLRTLPTLQELHLS-------DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-------- 152 (461)
T ss_dssp CTTSC----CBGGGHHHHHHHTTSCTTCCEEECC-------SSBCHHHHHHHHHHHHTSTTCCCCEEECTTS--------
T ss_pred ccCCC----CCHHHHHHHHHHHccCCceeEEECC-------CCcCchHHHHHHHHHHhcCCCcceEEECCCC--------
Confidence 99765 655 3456666789999999994 346888777766543 568999999976
Q ss_pred CCCCCCCccCCCCcCHH---HHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHh----cCCCCcEEEecCccccccccc
Q 038791 254 DPDSDGFTAEDASVSRE---GLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKS----KCSSLKVLKLGQFHGVCLAIG 326 (683)
Q Consensus 254 ~~~~~g~~~~~~~lt~~---~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~----~~~~L~~L~L~~c~~l~~~~~ 326 (683)
.+++. .+...+..+++|++|+++++ .+++.+ +..+.. ..++|++|++++|.--.....
T Consensus 153 ------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~--~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 153 ------------SLSAASCEPLASVLRAKPDFKELTVSNN-DINEAG--VRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp ------------CCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHH--HHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred ------------CCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHH--HHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 34433 45555667899999999985 566544 333332 467999999998743211111
Q ss_pred ccccccccCCCCcEEEeccCCCCCHHHHHHHHh----cCCCCcEEEecCCCCCCHHHHHHHHH---hcccCccEEEeecc
Q 038791 327 WQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR----GCRRLIKFELEGCKNVTVDGLRTMAA---LRRETLVEMKISCC 399 (683)
Q Consensus 327 ~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~----~~~~L~~L~L~~c~~it~~~l~~l~~---~~~~~L~~L~l~~c 399 (683)
.....+..+++|++|++++|. +++.++..++. .+++|++|++++|. +++.++..+.. .+ ++|++|++++|
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~-~~L~~L~Ls~n 294 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAK-ESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHC-TTCCEEECTTC
T ss_pred HHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhC-CCcceEECCCC
Confidence 124456688999999999985 89988877664 47899999999997 99988655544 35 99999999988
Q ss_pred cccChhhHHHHHHh----cCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccc
Q 038791 400 KQLGAVASCKALDL----VRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQI 475 (683)
Q Consensus 400 ~~l~~~~~l~~l~~----~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 475 (683)
.. ...+...+.. ..++|+.|+++.+.++..+...++..+.
T Consensus 295 ~i--~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~---------------------------------- 338 (461)
T 1z7x_W 295 EL--GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA---------------------------------- 338 (461)
T ss_dssp CC--HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH----------------------------------
T ss_pred CC--chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh----------------------------------
Confidence 54 2333333333 2369999999966666655554433222
Q ss_pred cccccccccCCCCceeeeeeeccccCCCccccCC----C-CCCCcceeeecccCCCCCCCCCCCccch----hhhhccCc
Q 038791 476 KENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGL----D-DCPVLEEIRIKMEGDSRGRQKPSDRAFG----LSCLTRYP 546 (683)
Q Consensus 476 ~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L----~-~~~~L~~L~l~~~~~c~~~~~~~~~~~~----~~~l~~l~ 546 (683)
.+++|+.|+++ ++.+++.+...+ . .+++|++|+++ +|. ++ ..+ +..+..++
T Consensus 339 --------~~~~L~~L~Ls---~n~i~~~~~~~l~~~l~~~~~~L~~L~L~---~n~-i~-----~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 339 --------QNRFLLELQIS---NNRLEDAGVRELCQGLGQPGSVLRVLWLA---DCD-VS-----DSSCSSLAATLLANH 398 (461)
T ss_dssp --------HCSSCCEEECC---SSBCHHHHHHHHHHHHTSTTCCCCEEECT---TSC-CC-----HHHHHHHHHHHHHCC
T ss_pred --------hCCCccEEEcc---CCccccccHHHHHHHHcCCCCceEEEECC---CCC-CC-----hhhHHHHHHHHHhCC
Confidence 25678888864 356655444332 2 26789999999 882 11 111 45677789
Q ss_pred ccccccccccccce
Q 038791 547 QLTKLRLEFGETIG 560 (683)
Q Consensus 547 ~L~~L~l~~~~~~g 560 (683)
+|++|+++.|.+.+
T Consensus 399 ~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 399 SLRELDLSNNCLGD 412 (461)
T ss_dssp CCCEEECCSSSCCH
T ss_pred CccEEECCCCCCCH
Confidence 99999998887665
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=6e-24 Score=240.52 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=94.2
Q ss_pred HHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCC
Q 038791 453 DELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKP 532 (683)
Q Consensus 453 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~ 532 (683)
.+..+++|+.+.+..+. ++.......-..+++|+.|+++ ++.++......+.++++|++|+++ +|.-..
T Consensus 395 ~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~L~L~---~n~l~~-- 463 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTR---LKVKDAQSPFQNLHLLKVLNLS---HSLLDISSEQLFDGLPALQHLNLQ---GNHFPK-- 463 (606)
T ss_dssp TTTTCTTCSEEECTTCC---EECCTTCCTTTTCTTCCEEECT---TCCCBTTCTTTTTTCTTCCEEECT---TCBCGG--
T ss_pred HhcCCccCCeEECCCCc---CCCcccchhhhCcccCCEEECC---CCccCCcCHHHHhCCCCCCEEECC---CCCCCc--
Confidence 34456677777664332 2211111111236778888863 466666666667778888888888 773110
Q ss_pred CCccc-hhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhcc----------ccee-eeccccCCCCCCcC
Q 038791 533 SDRAF-GLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNG----------IGNL-RLNELDYWPAQDRD 600 (683)
Q Consensus 533 ~~~~~-~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~----------~~~l-~l~~l~~~~~~~~~ 600 (683)
..+ .+..+..+++|+.|+++.|.+.+.. |..+.+++.|+.+++++ ++++ .+ .+ ++.
T Consensus 464 --~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L------~L~ 531 (606)
T 3t6q_A 464 --GNIQKTNSLQTLGRLEILVLSFCDLSSID---QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL------NLA 531 (606)
T ss_dssp --GEECSSCGGGGCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE------ECC
T ss_pred --cccccchhhccCCCccEEECCCCccCccC---hhhhccccCCCEEECCCCccCcCChhHhCccccc-EE------ECc
Confidence 000 1245677788888888888777633 55666777777766654 2222 22 33 456
Q ss_pred ccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 601 VNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 601 ~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
.|++++..|.. ++.+++|+.|++++|..
T Consensus 532 ~N~l~~~~~~~--~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 532 SNHISIILPSL--LPILSQQRTINLRQNPL 559 (606)
T ss_dssp SSCCCCCCGGG--HHHHHTSSEEECTTCCE
T ss_pred CCcccccCHhh--cccCCCCCEEeCCCCCc
Confidence 78888766665 89999999999999864
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=6.3e-24 Score=240.34 Aligned_cols=34 Identities=15% Similarity=0.061 Sum_probs=15.7
Q ss_pred CCCCceeeeeeeccccCCCccc-cCCCCCCCcceeeec
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPI-VGLDDCPVLEEIRIK 521 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~-~~L~~~~~L~~L~l~ 521 (683)
+++|+.|+++ ++.+++... ..+.++++|++|+++
T Consensus 398 l~~L~~L~l~---~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 398 LEELQHLDFQ---HSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp CTTCCEEECT---TSEEESTTTTTTTTTCTTCCEEECT
T ss_pred CCCCCeeECC---CCccCCccChhhhhccccCCEEECc
Confidence 4555555542 233333333 234455555555555
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=4e-24 Score=241.92 Aligned_cols=175 Identities=12% Similarity=0.071 Sum_probs=114.9
Q ss_pred HHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccC-CCCCCCcceeeecccCCCCCCCC
Q 038791 453 DELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVG-LDDCPVLEEIRIKMEGDSRGRQK 531 (683)
Q Consensus 453 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~-L~~~~~L~~L~l~~~~~c~~~~~ 531 (683)
.+..+++|+.+.+..+. ++......+ ..+++|+.|+++ ++.++...... +.++++|++|+++ +|...
T Consensus 371 ~~~~l~~L~~L~l~~n~---l~~~~~~~~-~~l~~L~~L~l~---~n~l~~~~~~~~~~~l~~L~~L~l~---~n~l~-- 438 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNE---PLSLKTEAF-KECPQLELLDLA---FTRLKVKDAQSPFQNLHLLKVLNLS---HSLLD-- 438 (606)
T ss_dssp TTTTCTTCCEEECCSCS---CEEECTTTT-TTCTTCSEEECT---TCCEECCTTCCTTTTCTTCCEEECT---TCCCB--
T ss_pred hcccCCCCCEEECCCCc---CCcCCHHHh-cCCccCCeEECC---CCcCCCcccchhhhCcccCCEEECC---CCccC--
Confidence 34567778888774433 222222222 237889999874 46655554433 7888999999999 77321
Q ss_pred CCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhcc----------ccee-eeccccCCCCCCcC
Q 038791 532 PSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNG----------IGNL-RLNELDYWPAQDRD 600 (683)
Q Consensus 532 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~----------~~~l-~l~~l~~~~~~~~~ 600 (683)
...+..+..+++|+.|+++.|.+.+.....+..+.+++.|+.+++++ ++.+ +|..| ++.
T Consensus 439 ----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L------~Ls 508 (606)
T 3t6q_A 439 ----ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV------DLS 508 (606)
T ss_dssp ----TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE------ECC
T ss_pred ----CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE------ECC
Confidence 22255678899999999999998875555556677788888777765 2222 33333 456
Q ss_pred ccCcccCcccchHHHHhhhhhhhhhccchhhHH-HHHHhcCCccccccccccc
Q 038791 601 VNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHF-MMFFTRMPNVRDVQLREDY 652 (683)
Q Consensus 601 ~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 652 (683)
.|++++..|.. ++++++| .|++++|.-... ...+..+++|+.+.+....
T Consensus 509 ~N~l~~~~~~~--l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 509 HNRLTSSSIEA--LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp SSCCCGGGGGG--GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred CCccCcCChhH--hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 78888777766 8888888 888888864321 2335567888888887543
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=3.7e-22 Score=229.00 Aligned_cols=232 Identities=18% Similarity=0.167 Sum_probs=127.6
Q ss_pred CCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHH
Q 038791 115 PGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQE 194 (683)
Q Consensus 115 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~ 194 (683)
+++++|+++++.. .......+..+++|++|+++++.+ .+..+..+..++ +|++|+|++|.. ..+..
T Consensus 25 ~~l~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~----~L~~L~L~~n~l-~~l~~-- 90 (680)
T 1ziw_A 25 TNITVLNLTHNQL------RRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLP----MLKVLNLQHNEL-SQLSD-- 90 (680)
T ss_dssp TTCSEEECCSSCC------CCCCGGGGGGGTTCSEEECCSSCC-CCCCTTHHHHCT----TCCEEECCSSCC-CCCCT--
T ss_pred CCCcEEECCCCCC------CCcCHHHHhCCCcCcEEECCCCcc-CccCHHHHhccc----CcCEEECCCCcc-CccCh--
Confidence 5688888886542 222233567788888888888876 344455566665 888888887642 12222
Q ss_pred HHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHH
Q 038791 195 IREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQ 274 (683)
Q Consensus 195 l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~ 274 (683)
..+..+++|++|+++. +.++......+ ..+++|++|++++|.- +... +.
T Consensus 91 --~~~~~l~~L~~L~L~~-------n~l~~~~~~~~-~~l~~L~~L~Ls~n~l-~~~~--------------------~~ 139 (680)
T 1ziw_A 91 --KTFAFCTNLTELHLMS-------NSIQKIKNNPF-VKQKNLITLDLSHNGL-SSTK--------------------LG 139 (680)
T ss_dssp --TTTTTCTTCSEEECCS-------SCCCCCCSCTT-TTCTTCCEEECCSSCC-SCCC--------------------CC
T ss_pred --hhhccCCCCCEEECCC-------CccCccChhHc-cccCCCCEEECCCCcc-cccC--------------------ch
Confidence 1235788888888831 12221111122 3788888888887531 1100 01
Q ss_pred HHhCCCCCcEEEeccccCcCCChhHHHHH-HhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHH
Q 038791 275 LFSGLPLLEELVLDVCKNVRDSGPVLEVL-KSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMG 353 (683)
Q Consensus 275 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l-~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~ 353 (683)
.+..+++|++|+++++ .++... ...+ ...+++|+.|+++++.- .+..+..+..+++|+.|++.++. +++..
T Consensus 140 ~~~~l~~L~~L~L~~n-~l~~~~--~~~~~~~~~~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~l~~~~-l~~~~ 211 (680)
T 1ziw_A 140 TQVQLENLQELLLSNN-KIQALK--SEELDIFANSSLKKLELSSNQI----KEFSPGCFHAIGRLFGLFLNNVQ-LGPSL 211 (680)
T ss_dssp SSSCCTTCCEEECCSS-CCCCBC--HHHHGGGTTCEESEEECTTCCC----CCBCTTGGGGSSEECEEECTTCC-CHHHH
T ss_pred hhcccccCCEEEccCC-cccccC--HHHhhccccccccEEECCCCcc----cccChhhhhhhhhhhhhhccccc-cChhh
Confidence 1345788888888874 455432 1222 12457888888877422 22334455566677777776654 55444
Q ss_pred HHHHHh--cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeeccc
Q 038791 354 LVAIGR--GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCK 400 (683)
Q Consensus 354 l~~l~~--~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~ 400 (683)
...+.. ..++|+.|++++|. +++.....+...-.++|++|++++|.
T Consensus 212 ~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 212 TEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp HHHHHHHHTTSCCCEEECTTSC-CCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred HHHHHHHhhhccccEEEccCCc-ccccChhHhhccCcCCCCEEECCCCC
Confidence 433321 13556666666654 33322222221100236666665554
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=3.2e-22 Score=226.37 Aligned_cols=263 Identities=14% Similarity=0.047 Sum_probs=120.1
Q ss_pred hcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHH
Q 038791 305 SKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMA 384 (683)
Q Consensus 305 ~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~ 384 (683)
..+++|+.|++.++... .+..+..+++|++|++++|. ++. +..+ .+++|++|++++|..+... .+.
T Consensus 282 ~~l~~L~~L~l~~~~~~------~l~~l~~~~~L~~L~l~~n~-l~~--lp~~--~l~~L~~L~l~~n~~~~~~---~~~ 347 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIK------YLEDVPKHFKWQSLSIIRCQ-LKQ--FPTL--DLPFLKSLTLTMNKGSISF---KKV 347 (606)
T ss_dssp GGGTTCSEEEEESCCCC------CCCCCCTTCCCSEEEEESCC-CSS--CCCC--CCSSCCEEEEESCSSCEEC---CCC
T ss_pred ccCCCCCEEEecCccch------hhhhccccccCCEEEccccc-Ccc--cccC--CCCccceeeccCCcCccch---hhc
Confidence 44566666666653321 11245566666667666664 322 1123 4666777776666433221 111
Q ss_pred HhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhcccc
Q 038791 385 ALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFC 464 (683)
Q Consensus 385 ~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~ 464 (683)
.+ ++|++|++++|...... ........+++|+.|+++.+.++... ..+..+++|+.+.
T Consensus 348 -~l-~~L~~L~ls~n~l~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~-------------------~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 348 -AL-PSLSYLDLSRNALSFSG-CCSYSDLGTNSLRHLDLSFNGAIIMS-------------------ANFMGLEELQHLD 405 (606)
T ss_dssp -CC-TTCCEEECCSSCEEEEE-ECCHHHHCCSCCCEEECCSCSEEEEC-------------------CCCTTCTTCCEEE
T ss_pred -cC-CCCCEEECcCCccCCCc-chhhhhccCCcccEeECCCCccccch-------------------hhccCCCCCCeeE
Confidence 23 66677777665432110 01122345566777776633322100 1222344444444
Q ss_pred ccCCCCcccccccc-ccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhc
Q 038791 465 LPEGGNWHLQIKEN-GVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLT 543 (683)
Q Consensus 465 l~~~~~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~ 543 (683)
+..+. ++.... ..+ ..+++|+.|+++ ++.+++.....+.++++|++|+++ +|.... ...+..+.
T Consensus 406 l~~n~---l~~~~~~~~~-~~l~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~~-----~~~~~~~~ 470 (606)
T 3vq2_A 406 FQHST---LKRVTEFSAF-LSLEKLLYLDIS---YTNTKIDFDGIFLGLTSLNTLKMA---GNSFKD-----NTLSNVFA 470 (606)
T ss_dssp CTTSE---EESTTTTTTT-TTCTTCCEEECT---TSCCEECCTTTTTTCTTCCEEECT---TCEEGG-----GEECSCCT
T ss_pred CCCCc---cCCccChhhh-hccccCCEEECc---CCCCCccchhhhcCCCCCCEEECC---CCcCCC-----cchHHhhc
Confidence 42111 111111 111 124455555542 244444334444555555555555 441000 00123344
Q ss_pred cCcccccccccccccceeecccCCCCCCchhhHHHhhcc----------ccee-eeccccCCCCCCcCccCcccCcccch
Q 038791 544 RYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNG----------IGNL-RLNELDYWPAQDRDVNQRSLTLPASG 612 (683)
Q Consensus 544 ~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~----------~~~l-~l~~l~~~~~~~~~~n~~~~~~p~~~ 612 (683)
.+++|+.|+++.|.+.+. .|..+.+++.|+.+++++ ++.+ +|..| ++..|+++ ++|..
T Consensus 471 ~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L------~l~~N~l~-~~p~~- 539 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQI---SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL------DCSFNRIE-TSKGI- 539 (606)
T ss_dssp TCTTCCEEECTTSCCCEE---CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE------ECTTSCCC-CEESC-
T ss_pred cCCCCCEEECCCCcCCcc---ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE------ECCCCcCc-ccCHh-
Confidence 455555555555554442 133344444444444432 1122 23333 33457766 67776
Q ss_pred HHHHhh-hhhhhhhccchh
Q 038791 613 LIAQCL-TLRKLIIHGTAH 630 (683)
Q Consensus 613 ~l~~~~-~L~~l~~~~~~~ 630 (683)
++.++ +|++|++++|..
T Consensus 540 -~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 540 -LQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp -GGGSCTTCCEEECCSCCC
T ss_pred -HhhhcccCcEEEccCCCc
Confidence 77776 589999988763
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=1.9e-22 Score=231.46 Aligned_cols=479 Identities=14% Similarity=0.076 Sum_probs=223.0
Q ss_pred ccCCCccEEEeccccccccCCCcccHH-HHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCC
Q 038791 112 PQWPGLRHVKLVRWHQRLQAPLGAEFI-PLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGF 190 (683)
Q Consensus 112 ~~~~~L~~L~L~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i 190 (683)
..+++|++|+++++... .++ ..+..+++|++|++++|.+. +..+..+..+ ++|++|++++|.... +
T Consensus 70 ~~l~~L~~L~L~~n~l~-------~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l----~~L~~L~Ls~n~l~~-~ 136 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELS-------QLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQ----KNLITLDLSHNGLSS-T 136 (680)
T ss_dssp HHCTTCCEEECCSSCCC-------CCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTC----TTCCEEECCSSCCSC-C
T ss_pred hcccCcCEEECCCCccC-------ccChhhhccCCCCCEEECCCCccC-ccChhHcccc----CCCCEEECCCCcccc-c
Confidence 45788999999865422 122 24667888999999888663 2222223333 488888888765211 1
Q ss_pred CHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHH-hcCCCCcEEeecCCCCCCCCCCC-CCCCC----CccCC
Q 038791 191 KAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIA-TNCPKLTLLHLVDTSSLANERGD-PDSDG----FTAED 264 (683)
Q Consensus 191 ~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~-~~~~~L~~L~L~~c~~l~~~~~~-~~~~g----~~~~~ 264 (683)
.. ..+..+++|++|+++. +.++......+. ..+++|++|+++++. ++..... ....+ .....
T Consensus 137 ~~----~~~~~l~~L~~L~L~~-------n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 137 KL----GTQVQLENLQELLLSN-------NKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp CC----CSSSCCTTCCEEECCS-------SCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTT
T ss_pred Cc----hhhcccccCCEEEccC-------CcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhhhccc
Confidence 11 1124678888888831 123322222221 256788888887652 2211100 00000 00011
Q ss_pred CCcCHHHHHHHH--hCCCCCcEEEeccccCcCCChhHHHHHHhcC--CCCcEEEecCcccccccccccccccccCCCCcE
Q 038791 265 ASVSREGLIQLF--SGLPLLEELVLDVCKNVRDSGPVLEVLKSKC--SSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLES 340 (683)
Q Consensus 265 ~~lt~~~l~~l~--~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~--~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~ 340 (683)
..++......+. ...++|+.|+++++ .+++.. +.....+ ++|+.|+++++.- .+..+..++.+++|++
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~---~~~~~~l~~~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~ 276 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTS---NTTFLGLKWTNLTMLDLSYNNL----NVVGNDSFAWLPQLEY 276 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTS-CCCEEC---TTTTGGGGGSCCCEEECTTSCC----CEECTTTTTTCTTCCE
T ss_pred cccChhhHHHHHHHhhhccccEEEccCC-cccccC---hhHhhccCcCCCCEEECCCCCc----CccCcccccCcccccE
Confidence 222222222211 12366777777663 333221 1111222 3477777766422 1223344556666777
Q ss_pred EEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHH-------HHHhcccCccEEEeecccccChhhHHHHHHh
Q 038791 341 LSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRT-------MAALRRETLVEMKISCCKQLGAVASCKALDL 413 (683)
Q Consensus 341 L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~-------l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~ 413 (683)
|+++++. ++......+. .+++|+.|+++++..-....... ....+ ++|++|++++|...+... ....
T Consensus 277 L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~---~~~~ 350 (680)
T 1ziw_A 277 FFLEYNN-IQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKS---NMFT 350 (680)
T ss_dssp EECCSCC-BSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCT---TTTT
T ss_pred eeCCCCc-cCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCCh---hHhc
Confidence 7776653 4432222232 25666666665543111110000 01123 566666666554332110 1122
Q ss_pred cCCCccEEEEeeecCCh-----hhHHHHh-hhccccCcccC--Cc--HHHHhhhhhhccccccCCCCcccccccc--ccc
Q 038791 414 VRDRIEKLHIDCVWDGL-----ELTESSE-SKVRSFDLNEL--ND--EDDELGLRKKRKFCLPEGGNWHLQIKEN--GVC 481 (683)
Q Consensus 414 ~~~~L~~L~L~c~~~~~-----~~~~~~~-~~~~~l~l~~~--~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~--~~~ 481 (683)
.+++|+.|+++.+..+. ..+.... ..+..+++... .. ...+..+++|+.+.+..+. +++... .+.
T Consensus 351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~ 427 (680)
T 1ziw_A 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE---IGQELTGQEWR 427 (680)
T ss_dssp TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CEEECCSGGGT
T ss_pred cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc---CccccCccccc
Confidence 44566666665332111 1111110 12222222211 00 0123344555555543222 111110 111
Q ss_pred c----------------------ccCCCCceeeeeeeccccCC--CccccCCCCCCCcceeeecccCCCCCCCCCCCccc
Q 038791 482 C----------------------KTWKGLKCLSIWIEVGQLLT--PLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAF 537 (683)
Q Consensus 482 ~----------------------~~~~~L~~L~L~~~~~~~l~--~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~ 537 (683)
+ ..+++|+.|++. ++.++ +..+..+.++++|+.|+++ +|.-. ..
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~---~n~l~~~~~~p~~~~~l~~L~~L~Ls---~N~l~------~i 495 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR---RVALKNVDSSPSPFQPLRNLTILDLS---NNNIA------NI 495 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT---TSCCBCTTCSSCTTTTCTTCCEEECC---SSCCC------CC
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhc---cccccccccCCcccccCCCCCEEECC---CCCCC------cC
Confidence 1 123444444432 12222 1122235556666666666 55211 22
Q ss_pred hhhhhccCcccccccccccccceeecc-----cCCCCCCchhhHHHhhcc----------ccee-eeccccCCCCCCcCc
Q 038791 538 GLSCLTRYPQLTKLRLEFGETIGYALT-----APGGETDLTLWDRFFFNG----------IGNL-RLNELDYWPAQDRDV 601 (683)
Q Consensus 538 ~~~~l~~l~~L~~L~l~~~~~~g~~~~-----~p~~~~~l~~l~~~~l~~----------~~~l-~l~~l~~~~~~~~~~ 601 (683)
.+..+..+++|+.|+++.|.+.+.... .+..+.+++.++.+++++ ++.+ +|..+ ++..
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L------~Ls~ 569 (680)
T 1ziw_A 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII------DLGL 569 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE------ECCS
T ss_pred ChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee------ECCC
Confidence 244567777888888877777653211 112356677777666654 1222 23333 3456
Q ss_pred cCcccCcccchHHHHhhhhhhhhhccchhhH-HHHHHh-cCCccccccccccc
Q 038791 602 NQRSLTLPASGLIAQCLTLRKLIIHGTAHEH-FMMFFT-RMPNVRDVQLREDY 652 (683)
Q Consensus 602 n~~~~~~p~~~~l~~~~~L~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 652 (683)
|+++ .+|+. .++++++|+.|++++|.-.. -...+. .+++|+.+.+..--
T Consensus 570 N~l~-~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 570 NNLN-TLPAS-VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp SCCC-CCCTT-TTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred CCCC-cCCHh-HhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 7776 45553 47888899999999885322 122233 57888888887543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=8.3e-23 Score=231.61 Aligned_cols=103 Identities=17% Similarity=0.069 Sum_probs=61.6
Q ss_pred CCCceeeeeeeccccCCCccccCCC--CCCCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccc------ccc
Q 038791 486 KGLKCLSIWIEVGQLLTPLPIVGLD--DCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLE------FGE 557 (683)
Q Consensus 486 ~~L~~L~L~~~~~~~l~~~~~~~L~--~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~------~~~ 557 (683)
++|+.|+++ ++.++.++. .+. ++++|++|+++ +|.-. . -+..+..+++|+.|+++ .|.
T Consensus 488 ~~L~~L~Ls---~N~l~~lp~-~~~~~~l~~L~~L~Ls---~N~l~------~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 488 YLLTSIDLR---FNKLTKLSD-DFRATTLPYLVGIDLS---YNSFS------K-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp GGCCEEECC---SSCCCBCCG-GGSTTTCTTCCEEECC---SSCCS------S-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred CCccEEECc---CCcCCccCh-hhhhccCCCcCEEECC---CCCCC------C-cChhhhcCCCCCEEECCCCcccccCc
Confidence 378888864 366664443 333 78888888888 77311 1 14556778888888884 344
Q ss_pred cceeecccCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccch
Q 038791 558 TIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTA 629 (683)
Q Consensus 558 ~~g~~~~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~ 629 (683)
+.|. .|..+.+++. |..|+ +..|++ +.||.. +. ++|+.|++++|.
T Consensus 554 l~~~---~p~~l~~l~~-------------L~~L~------Ls~N~l-~~ip~~--~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 554 TLRE---WPEGITLCPS-------------LTQLQ------IGSNDI-RKVNEK--IT--PNISVLDIKDNP 598 (636)
T ss_dssp CCCC---CCTTGGGCSS-------------CCEEE------CCSSCC-CBCCSC--CC--TTCCEEECCSCT
T ss_pred cccc---ChHHHhcCCC-------------CCEEE------CCCCcC-CccCHh--Hh--CcCCEEECcCCC
Confidence 4442 3554444433 23332 234666 667765 33 678888888884
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=1e-22 Score=235.31 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=29.7
Q ss_pred CCCceeeeeeeccccCCCccccCCC--CCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccc
Q 038791 486 KGLKCLSIWIEVGQLLTPLPIVGLD--DCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEF 555 (683)
Q Consensus 486 ~~L~~L~L~~~~~~~l~~~~~~~L~--~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 555 (683)
++|+.|+|+ ++.++.++. .+. ++++|+.|+++ +|... .+ +..+..+++|+.|+|+.
T Consensus 728 ~~L~~L~Ls---~N~L~~lp~-~l~~~~l~~L~~L~Ls---~N~L~------~l-p~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 728 YLLTTIDLR---FNKLTSLSD-DFRATTLPYLSNMDVS---YNCFS------SF-PTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GGCCEEECC---SSCCCCCCG-GGSTTTCTTCCEEECC---SSCCS------SC-CCGGGGCTTCCEEECCC
T ss_pred CCccEEECC---CCCCccchH-HhhhccCCCcCEEEeC---CCCCC------cc-chhhhcCCCCCEEECCC
Confidence 366666653 355554332 233 66667777776 55211 11 33455666666666654
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=7.3e-22 Score=220.62 Aligned_cols=309 Identities=13% Similarity=0.096 Sum_probs=151.0
Q ss_pred hCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHH
Q 038791 277 SGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVA 356 (683)
Q Consensus 277 ~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~ 356 (683)
..+++|++|+++.+ .+... .......+++|+.|+++++.-. ............+++|+.|+++++. +++.....
T Consensus 169 ~~l~~L~~L~l~~n-~~~~~---~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 242 (549)
T 2z81_A 169 KSIRDIHHLTLHLS-ESAFL---LEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNE 242 (549)
T ss_dssp TTCSEEEEEEEECS-BSTTH---HHHHHHSTTTBSEEEEESCBCT-TCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHH
T ss_pred hccccCceEecccC-ccccc---chhhHhhcccccEEEccCCccc-cccccccchhhhhhcccceeccccc-cchhHHHH
Confidence 34566666666653 33221 1222345677777777663221 1000001112245667777777654 66666555
Q ss_pred HH---hcCCCCcEEEecCCCCCCHH------HHHHHHHhcccCccEEEeecccccChh--hHHHHHHhcCCCccEEEEee
Q 038791 357 IG---RGCRRLIKFELEGCKNVTVD------GLRTMAALRRETLVEMKISCCKQLGAV--ASCKALDLVRDRIEKLHIDC 425 (683)
Q Consensus 357 l~---~~~~~L~~L~L~~c~~it~~------~l~~l~~~~~~~L~~L~l~~c~~l~~~--~~l~~l~~~~~~L~~L~L~c 425 (683)
+. ..+++|+.|++++|. +++. ....+ ..+ ++|+.|++.++..-... ..+..+....++|+.|+++.
T Consensus 243 l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~-~~l-~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCT-LNGLGDFNPSESDVV-SEL-GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCE-EECCSCCCCCTTTCC-CCC-TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHhhhhcccccccccccc-ccccccccccchhhh-hhh-cccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 54 235667777777665 2110 00000 112 56777777655322100 00111223346788888875
Q ss_pred ecCCh--hhHHHHhhhccccCcccC--Cc-HH----HHhhhhhhccccccCCCCccccccc--cccccccCCCCceeeee
Q 038791 426 VWDGL--ELTESSESKVRSFDLNEL--ND-ED----DELGLRKKRKFCLPEGGNWHLQIKE--NGVCCKTWKGLKCLSIW 494 (683)
Q Consensus 426 ~~~~~--~~~~~~~~~~~~l~l~~~--~~-~~----~~~~~~~L~~l~l~~~~~~~~~~~~--~~~~~~~~~~L~~L~L~ 494 (683)
+.++. ..+..-...++.+++... .. .. .+..+++|+.+.+..+. ++... ...+ ..+++|+.|+++
T Consensus 320 n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~~~-~~l~~L~~L~Ls 395 (549)
T 2z81_A 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH---LRSMQKTGEIL-LTLKNLTSLDIS 395 (549)
T ss_dssp SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC---CCCHHHHHHHG-GGCTTCCEEECT
T ss_pred CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc---ccccccchhhh-hcCCCCCEEECC
Confidence 54431 111112234444454443 11 11 13455667766664332 11100 0111 236777777763
Q ss_pred eeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchh
Q 038791 495 IEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTL 574 (683)
Q Consensus 495 ~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~ 574 (683)
++.++.++ ..+..+++|++|+++ +|+-.. + +..+ .++|+.|+++.|.+++.. .+++.
T Consensus 396 ---~N~l~~lp-~~~~~~~~L~~L~Ls---~N~l~~------l-~~~~--~~~L~~L~Ls~N~l~~~~-------~~l~~ 452 (549)
T 2z81_A 396 ---RNTFHPMP-DSCQWPEKMRFLNLS---STGIRV------V-KTCI--PQTLEVLDVSNNNLDSFS-------LFLPR 452 (549)
T ss_dssp ---TCCCCCCC-SCCCCCTTCCEEECT---TSCCSC------C-CTTS--CTTCSEEECCSSCCSCCC-------CCCTT
T ss_pred ---CCCCccCC-hhhcccccccEEECC---CCCccc------c-cchh--cCCceEEECCCCChhhhc-------ccCCh
Confidence 35665433 345667777777777 663111 0 0111 257788888877777642 24555
Q ss_pred hHHHhhccc--c------ee-eeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccch
Q 038791 575 WDRFFFNGI--G------NL-RLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTA 629 (683)
Q Consensus 575 l~~~~l~~~--~------~l-~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~ 629 (683)
|+.+++++. . .+ +|..| ++..|++++..|.. ++.+++|+.|++++|.
T Consensus 453 L~~L~Ls~N~l~~ip~~~~l~~L~~L------~Ls~N~l~~~~~~~--~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 453 LQELYISRNKLKTLPDASLFPVLLVM------KISRNQLKSVPDGI--FDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCEEECCSSCCSSCCCGGGCTTCCEE------ECCSSCCCCCCTTG--GGGCTTCCEEECCSSC
T ss_pred hcEEECCCCccCcCCCcccCccCCEE------ecCCCccCCcCHHH--HhcCcccCEEEecCCC
Confidence 555555441 1 11 22222 44567777655554 7777888888887776
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=7.9e-21 Score=212.23 Aligned_cols=410 Identities=12% Similarity=0.057 Sum_probs=202.4
Q ss_pred ccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCC
Q 038791 112 PQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFK 191 (683)
Q Consensus 112 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~ 191 (683)
..+++|++|+++++... +..+..+..+++|++|++++|.+ .+..+..+..++ +|++|++++|. ++
T Consensus 47 ~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~----~L~~L~Ls~n~----l~ 111 (549)
T 2z81_A 47 RACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNHL-SSLSSSWFGPLS----SLKYLNLMGNP----YQ 111 (549)
T ss_dssp SSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCC-CSCCHHHHTTCT----TCCEEECTTCC----CS
T ss_pred hcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCcc-CccCHHHhccCC----CCcEEECCCCc----cc
Confidence 45667777777755421 12223455667777777777765 233334454444 77777777654 21
Q ss_pred HHHHHHHHhhCCCCceEEec-eecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCC----CccCCCC
Q 038791 192 AQEIREITAACPSLNKLLVA-CTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDG----FTAEDAS 266 (683)
Q Consensus 192 ~~~l~~l~~~~~~L~~L~L~-c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g----~~~~~~~ 266 (683)
....+..+..+++|++|+++ +. .++......+ ..+++|++|+++++.--...+....... .....+.
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIGNVE-------TFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESS-------SCCEECTTTT-TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ccchhhhhhccCCccEEECCCCc-------cccccCHhhh-hcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 11111223556677777773 21 0111000111 3566666666665431110100000000 0000112
Q ss_pred cCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccC
Q 038791 267 VSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNC 346 (683)
Q Consensus 267 lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~ 346 (683)
++. ....+...+++|++|+++++ .++........+...+++|+.|++.++.-...........+..+++|+.|++++|
T Consensus 184 ~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 184 SAF-LLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp STT-HHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred ccc-cchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 221 11223456899999999984 5554210001122457899999999853211111122233457889999999987
Q ss_pred CCCCHH------HHHHHHhcCCCCcEEEecCCCCCCHH----HHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCC
Q 038791 347 GDLSDM------GLVAIGRGCRRLIKFELEGCKNVTVD----GLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRD 416 (683)
Q Consensus 347 ~~lt~~------~l~~l~~~~~~L~~L~L~~c~~it~~----~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~ 416 (683)
. +++. .... ...+++|+.|++.++. +... .+..+.... ++|+.|++++|... ..+ ..+...++
T Consensus 262 ~-~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~-~~L~~L~l~~n~l~-~ip--~~~~~~l~ 334 (549)
T 2z81_A 262 T-LNGLGDFNPSESDV-VSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLL-EKVKRITVENSKVF-LVP--CSFSQHLK 334 (549)
T ss_dssp E-EECCSCCCCCTTTC-CCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHS-TTCCEEEEESSCCC-CCC--HHHHHHCT
T ss_pred c-ccccccccccchhh-hhhhcccccccccccc-cchhhhcccchhhhhhc-ccceEEEeccCccc-cCC--HHHHhcCc
Confidence 4 1110 0000 1124555555555543 2211 001111222 45555555544321 111 01112345
Q ss_pred CccEEEEeeecCChhhHHHH-----hhhccccCcccC--CcH----HHHhhhhhhccccccCCCCccccccccccccccC
Q 038791 417 RIEKLHIDCVWDGLELTESS-----ESKVRSFDLNEL--NDE----DDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTW 485 (683)
Q Consensus 417 ~L~~L~L~c~~~~~~~~~~~-----~~~~~~l~l~~~--~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 485 (683)
+|+.|+++.+.++...+... ...++.+++... ... ..+..+++|+.+.+..+. ++ ..+..+ ..+
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~---l~-~lp~~~-~~~ 409 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT---FH-PMPDSC-QWP 409 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC---CC-CCCSCC-CCC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC---Cc-cCChhh-ccc
Confidence 55555555444443222110 122333333322 111 235677889988885443 22 112222 246
Q ss_pred CCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeeccc
Q 038791 486 KGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTA 565 (683)
Q Consensus 486 ~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~ 565 (683)
++|+.|+++ ++.++.++... .++|+.|+++ +|.-.. ....+++|+.|+++.|.+.. .
T Consensus 410 ~~L~~L~Ls---~N~l~~l~~~~---~~~L~~L~Ls---~N~l~~----------~~~~l~~L~~L~Ls~N~l~~----i 466 (549)
T 2z81_A 410 EKMRFLNLS---STGIRVVKTCI---PQTLEVLDVS---NNNLDS----------FSLFLPRLQELYISRNKLKT----L 466 (549)
T ss_dssp TTCCEEECT---TSCCSCCCTTS---CTTCSEEECC---SSCCSC----------CCCCCTTCCEEECCSSCCSS----C
T ss_pred ccccEEECC---CCCcccccchh---cCCceEEECC---CCChhh----------hcccCChhcEEECCCCccCc----C
Confidence 899999974 46665443221 2689999999 883211 12578999999999998873 3
Q ss_pred CCCCCCchhhHHHhhcc
Q 038791 566 PGGETDLTLWDRFFFNG 582 (683)
Q Consensus 566 p~~~~~l~~l~~~~l~~ 582 (683)
|. ...++.++.+++++
T Consensus 467 p~-~~~l~~L~~L~Ls~ 482 (549)
T 2z81_A 467 PD-ASLFPVLLVMKISR 482 (549)
T ss_dssp CC-GGGCTTCCEEECCS
T ss_pred CC-cccCccCCEEecCC
Confidence 44 34567777777765
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=3.5e-22 Score=224.22 Aligned_cols=202 Identities=13% Similarity=0.049 Sum_probs=103.3
Q ss_pred cccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHH
Q 038791 330 DGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCK 409 (683)
Q Consensus 330 ~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~ 409 (683)
..+..+++|++|+++++. ++. +......+ +|++|++++|. ++.. .. ..+ ++|+.|++++|........
T Consensus 276 ~~~~~l~~L~~L~l~~~~-l~~--l~~~~~~~-~L~~L~l~~n~-~~~l--~~--~~l-~~L~~L~l~~n~~~~~~~~-- 343 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVT-IER--VKDFSYNF-GWQHLELVNCK-FGQF--PT--LKL-KSLKRLTFTSNKGGNAFSE-- 343 (570)
T ss_dssp TTTGGGTTCSEEEEESCE-ECS--CCBCCSCC-CCSEEEEESCB-CSSC--CB--CBC-SSCCEEEEESCBSCCBCCC--
T ss_pred hhhcCcCcccEEEecCcc-chh--hhhhhccC-CccEEeeccCc-cccc--Cc--ccc-cccCEEeCcCCcccccccc--
Confidence 334456777777777764 331 11112224 77777777776 4411 11 123 7778888877765432221
Q ss_pred HHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCc
Q 038791 410 ALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLK 489 (683)
Q Consensus 410 ~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~ 489 (683)
..+++|+.|+++.+.++.... ....+..+++|+.+.+..+. ++.....+ ..+++|+
T Consensus 344 ---~~~~~L~~L~l~~n~l~~~~~----------------~~~~~~~~~~L~~L~l~~n~---l~~~~~~~--~~l~~L~ 399 (570)
T 2z63_A 344 ---VDLPSLEFLDLSRNGLSFKGC----------------CSQSDFGTTSLKYLDLSFNG---VITMSSNF--LGLEQLE 399 (570)
T ss_dssp ---CBCTTCCEEECCSSCCBEEEE----------------EEHHHHTCSCCCEEECCSCS---EEEEEEEE--ETCTTCC
T ss_pred ---ccCCCCCEEeCcCCccCcccc----------------ccccccccCccCEEECCCCc---cccccccc--cccCCCC
Confidence 356778888877444332110 00233455566666653322 11111111 1366777
Q ss_pred eeeeeeeccccCCCccc-cCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCC
Q 038791 490 CLSIWIEVGQLLTPLPI-VGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGG 568 (683)
Q Consensus 490 ~L~L~~~~~~~l~~~~~-~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~ 568 (683)
.|+++ ++.++.... ..+.++++|++|+++ +|... ...+..+..+++|+.|+++.|.+.+. ..|..
T Consensus 400 ~L~l~---~n~l~~~~~~~~~~~l~~L~~L~l~---~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~--~~p~~ 465 (570)
T 2z63_A 400 HLDFQ---HSNLKQMSEFSVFLSLRNLIYLDIS---HTHTR------VAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDI 465 (570)
T ss_dssp EEECT---TSEEESCTTSCTTTTCTTCCEEECT---TSCCE------ECCTTTTTTCTTCCEEECTTCEEGGG--EECSC
T ss_pred EEEcc---CCccccccchhhhhcCCCCCEEeCc---CCccc------ccchhhhhcCCcCcEEECcCCcCccc--cchhh
Confidence 77753 344444433 235667777777777 66211 11244566667777777776665521 12455
Q ss_pred CCCchhhHHHhhc
Q 038791 569 ETDLTLWDRFFFN 581 (683)
Q Consensus 569 ~~~l~~l~~~~l~ 581 (683)
+.+++.|+.++++
T Consensus 466 ~~~l~~L~~L~l~ 478 (570)
T 2z63_A 466 FTELRNLTFLDLS 478 (570)
T ss_dssp CTTCTTCCEEECT
T ss_pred hhcccCCCEEECC
Confidence 5555554444443
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=2.9e-21 Score=218.93 Aligned_cols=344 Identities=12% Similarity=0.014 Sum_probs=212.7
Q ss_pred HHHHhhcCCCCCEEEeeCccccCCC-----------------hhHHHh--hcCccCCCccEEEeccCCCCCCCCHHHHHH
Q 038791 137 FIPLFEHCECLKSIDLSNFYFWTED-----------------LPPVLR--AYPEKSANLTCLNLLTTSFTEGFKAQEIRE 197 (683)
Q Consensus 137 l~~~~~~~~~L~~L~Ls~~~~~~~~-----------------~~~~l~--~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~ 197 (683)
++..+..+++|++|+|+++.+. +. +|..+. .+ ++|++|+|++|.....+. .
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~ip~~l~~~~l----~~L~~L~L~~n~l~~~~p-----~ 267 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNL----KDLTDVEVYNCPNLTKLP-----T 267 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGC----TTCCEEEEECCTTCSSCC-----T
T ss_pred CCHHHhcccCCCEEECcCCccc-cccccccccccccchhcccCchhhhhccc----CCCCEEEecCCcCCccCh-----H
Confidence 5566788999999999998763 32 444443 44 499999999765322232 3
Q ss_pred HHhhCCCCceEEeceecCCCCccc-cCH-HHHHHHHh-----cCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHH
Q 038791 198 ITAACPSLNKLLVACTFDPRYIGF-VND-ETLSAIAT-----NCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSRE 270 (683)
Q Consensus 198 l~~~~~~L~~L~L~c~~~~~~~~~-l~~-~~l~~l~~-----~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~ 270 (683)
.+..+++|++|+++ .+. +++ .....+.. .+++|++|++++|. ++
T Consensus 268 ~l~~l~~L~~L~Ls-------~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--------------------l~-- 318 (636)
T 4eco_A 268 FLKALPEMQLINVA-------CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--------------------LK-- 318 (636)
T ss_dssp TTTTCSSCCEEECT-------TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--------------------CS--
T ss_pred HHhcCCCCCEEECc-------CCCCCccccchHHHHhhhccccCCCCCEEECCCCc--------------------CC--
Confidence 34678999999994 234 676 44444432 34899999998752 32
Q ss_pred HHHH--HHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCC-CcEEEeccCC
Q 038791 271 GLIQ--LFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGG-LESLSIKNCG 347 (683)
Q Consensus 271 ~l~~--l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~-L~~L~L~~~~ 347 (683)
.++. .+..+++|++|+++++ .+++. ++ ....+++|+.|+++++.- . ..+..+..+++ |++|+++++.
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N-~l~g~---ip-~~~~l~~L~~L~L~~N~l----~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYN-QLEGK---LP-AFGSEIKLASLNLAYNQI----T-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSC-CCEEE---CC-CCEEEEEESEEECCSSEE----E-ECCTTSEEECTTCCEEECCSSC
T ss_pred ccCchhhhccCCCCCEEeCcCC-cCccc---hh-hhCCCCCCCEEECCCCcc----c-cccHhhhhhcccCcEEEccCCc
Confidence 2333 4667899999999884 55422 33 345678999999987432 1 45566778888 9999999875
Q ss_pred CCCHHHHHHHHh-cCCCCcEEEecCCCCCCHHHHHHHHH------hcccCccEEEeecccccChhhHHHHHHhcCCCccE
Q 038791 348 DLSDMGLVAIGR-GCRRLIKFELEGCKNVTVDGLRTMAA------LRRETLVEMKISCCKQLGAVASCKALDLVRDRIEK 420 (683)
Q Consensus 348 ~lt~~~l~~l~~-~~~~L~~L~L~~c~~it~~~l~~l~~------~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~ 420 (683)
++. ....+.. .+++|+.|++++|. +++.....+.. .+ ++|++|++++|... ..+ ..+...+++|+.
T Consensus 389 -l~~-lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~-~lp--~~~~~~l~~L~~ 461 (636)
T 4eco_A 389 -LKY-IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKG-INVSSINLSNNQIS-KFP--KELFSTGSPLSS 461 (636)
T ss_dssp -CSS-CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCC-SCC--THHHHTTCCCSE
T ss_pred -Ccc-cchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccC-CCCCEEECcCCccC-cCC--HHHHccCCCCCE
Confidence 552 1111111 13479999999987 66543333320 12 68999999987654 221 123345688999
Q ss_pred EEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCcccccccccccc-ccCCCCceeeeeeeccc
Q 038791 421 LHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCC-KTWKGLKCLSIWIEVGQ 499 (683)
Q Consensus 421 L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~ 499 (683)
|+++.+.++ ........+. .....++++|+.+.+..+. ++ ..+..++ ..+++|+.|+++ ++
T Consensus 462 L~Ls~N~l~-~i~~~~~~~~----------~~~~~~l~~L~~L~Ls~N~---l~-~lp~~~~~~~l~~L~~L~Ls---~N 523 (636)
T 4eco_A 462 INLMGNMLT-EIPKNSLKDE----------NENFKNTYLLTSIDLRFNK---LT-KLSDDFRATTLPYLVGIDLS---YN 523 (636)
T ss_dssp EECCSSCCS-BCCSSSSEET----------TEECTTGGGCCEEECCSSC---CC-BCCGGGSTTTCTTCCEEECC---SS
T ss_pred EECCCCCCC-CcCHHHhccc----------cccccccCCccEEECcCCc---CC-ccChhhhhccCCCcCEEECC---CC
Confidence 999855543 1100000000 0012234477777774433 22 2222222 257889999974 47
Q ss_pred cCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccccccc
Q 038791 500 LLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGET 558 (683)
Q Consensus 500 ~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 558 (683)
.+++ .+..+.++++|++|+++ +|+..+.......-+..+..+++|+.|+++.|.+
T Consensus 524 ~l~~-ip~~~~~l~~L~~L~Ls---~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 524 SFSK-FPTQPLNSSTLKGFGIR---NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCSS-CCCGGGGCSSCCEEECC---SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCC-cChhhhcCCCCCEEECC---CCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 7776 34557789999999997 6542222211122266788899999999999887
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1.3e-20 Score=205.24 Aligned_cols=109 Identities=16% Similarity=0.045 Sum_probs=52.4
Q ss_pred CCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHH
Q 038791 115 PGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQE 194 (683)
Q Consensus 115 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~ 194 (683)
++|++|+|+++.. ....+..+..+++|++|+++++.....-.+..+..+ ++|++|+|++|. ++..
T Consensus 30 ~~l~~L~Ls~n~i------~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l----~~L~~L~Ls~n~----l~~~- 94 (455)
T 3v47_A 30 AHVNYVDLSLNSI------AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL----SSLIILKLDYNQ----FLQL- 94 (455)
T ss_dssp TTCCEEECCSSCC------CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC----TTCCEEECTTCT----TCEE-
T ss_pred CccCEEEecCCcc------CcCChhHhccCccccEEECcCCcccceECccccccc----ccCCEEeCCCCc----cCcc-
Confidence 5677777775542 222234456677777777777654211111223333 377777777554 2110
Q ss_pred HHHHHhhCCCCceEEeceecCCCCccccCHHHHHH-HHhcCCCCcEEeecCC
Q 038791 195 IREITAACPSLNKLLVACTFDPRYIGFVNDETLSA-IATNCPKLTLLHLVDT 245 (683)
Q Consensus 195 l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~-l~~~~~~L~~L~L~~c 245 (683)
.+..+..+++|++|+++ .+.+++..+.. ....+++|++|+++++
T Consensus 95 ~~~~~~~l~~L~~L~L~-------~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLT-------QCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp CTTTTTTCTTCCEEECT-------TSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred ChhhccCcccCCEEeCC-------CCCCCccccCcccccCcccCCEEECCCC
Confidence 01122455666666662 12333322221 1224556666666543
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=1.3e-19 Score=197.79 Aligned_cols=323 Identities=17% Similarity=0.168 Sum_probs=179.6
Q ss_pred CCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHH
Q 038791 115 PGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQE 194 (683)
Q Consensus 115 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~ 194 (683)
+++++|++.++.... ++ .+..+++|++|++++|.+. .++. +..+ ++|++|++++|. ++.
T Consensus 46 ~~l~~L~l~~~~i~~-------l~-~~~~l~~L~~L~Ls~n~l~--~~~~-~~~l----~~L~~L~l~~n~----l~~-- 104 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-------ID-GVEYLNNLTQINFSNNQLT--DITP-LKNL----TKLVDILMNNNQ----IAD-- 104 (466)
T ss_dssp HTCCEEECCSSCCCC-------CT-TGGGCTTCCEEECCSSCCC--CCGG-GTTC----TTCCEEECCSSC----CCC--
T ss_pred ccccEEecCCCCCcc-------Cc-chhhhcCCCEEECCCCccC--Cchh-hhcc----ccCCEEECCCCc----ccc--
Confidence 567788777554221 22 2566778888888887653 2232 3333 488888888654 222
Q ss_pred HHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHH
Q 038791 195 IREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQ 274 (683)
Q Consensus 195 l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~ 274 (683)
+.. +..+++|++|+++. +.+++.. . ...+++|++|++++|. +++ +..
T Consensus 105 ~~~-~~~l~~L~~L~L~~-------n~l~~~~--~-~~~l~~L~~L~l~~n~--------------------l~~--~~~ 151 (466)
T 1o6v_A 105 ITP-LANLTNLTGLTLFN-------NQITDID--P-LKNLTNLNRLELSSNT--------------------ISD--ISA 151 (466)
T ss_dssp CGG-GTTCTTCCEEECCS-------SCCCCCG--G-GTTCTTCSEEEEEEEE--------------------ECC--CGG
T ss_pred Chh-hcCCCCCCEEECCC-------CCCCCCh--H-HcCCCCCCEEECCCCc--------------------cCC--Chh
Confidence 111 46778888888831 1222211 1 3477888888887652 111 111
Q ss_pred HHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHH
Q 038791 275 LFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGL 354 (683)
Q Consensus 275 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l 354 (683)
+..+++|++|++.. .+.+.. . ...+++|+.|+++++.- . .+..+..+++|++|++++|. +++...
T Consensus 152 -~~~l~~L~~L~l~~--~~~~~~----~-~~~l~~L~~L~l~~n~l-~-----~~~~l~~l~~L~~L~l~~n~-l~~~~~ 216 (466)
T 1o6v_A 152 -LSGLTSLQQLSFGN--QVTDLK----P-LANLTTLERLDISSNKV-S-----DISVLAKLTNLESLIATNNQ-ISDITP 216 (466)
T ss_dssp -GTTCTTCSEEEEEE--SCCCCG----G-GTTCTTCCEEECCSSCC-C-----CCGGGGGCTTCSEEECCSSC-CCCCGG
T ss_pred -hccCCcccEeecCC--cccCch----h-hccCCCCCEEECcCCcC-C-----CChhhccCCCCCEEEecCCc-cccccc
Confidence 45677788887753 343321 2 35677888888876542 1 22346677788888887764 444322
Q ss_pred HHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHH
Q 038791 355 VAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTE 434 (683)
Q Consensus 355 ~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~ 434 (683)
+ ..+++|+.|++++|. +++. ..+. .+ ++|+.|++++|....... ...+++|+.|+++++.++..
T Consensus 217 --~-~~l~~L~~L~l~~n~-l~~~--~~l~-~l-~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~--- 280 (466)
T 1o6v_A 217 --L-GILTNLDELSLNGNQ-LKDI--GTLA-SL-TNLTDLDLANNQISNLAP-----LSGLTKLTELKLGANQISNI--- 280 (466)
T ss_dssp --G-GGCTTCCEEECCSSC-CCCC--GGGG-GC-TTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSSCCCCC---
T ss_pred --c-cccCCCCEEECCCCC-cccc--hhhh-cC-CCCCEEECCCCccccchh-----hhcCCCCCEEECCCCccCcc---
Confidence 2 237778888887776 5542 1222 33 778888887775442211 33567788877773332210
Q ss_pred HHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCC
Q 038791 435 SSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPV 514 (683)
Q Consensus 435 ~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~ 514 (683)
..+..+++|+.+.+..+. +++. .. + ..+++|+.|+++ ++.+++... +..+++
T Consensus 281 -----------------~~~~~l~~L~~L~L~~n~---l~~~-~~-~-~~l~~L~~L~L~---~n~l~~~~~--~~~l~~ 332 (466)
T 1o6v_A 281 -----------------SPLAGLTALTNLELNENQ---LEDI-SP-I-SNLKNLTYLTLY---FNNISDISP--VSSLTK 332 (466)
T ss_dssp -----------------GGGTTCTTCSEEECCSSC---CSCC-GG-G-GGCTTCSEEECC---SSCCSCCGG--GGGCTT
T ss_pred -----------------ccccCCCccCeEEcCCCc---ccCc-hh-h-cCCCCCCEEECc---CCcCCCchh--hccCcc
Confidence 112234445555443221 1111 11 1 236677777763 355555443 556777
Q ss_pred cceeeecccCCCCCCCCCCCccchhhhhccCccccccccccccccee
Q 038791 515 LEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGY 561 (683)
Q Consensus 515 L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~ 561 (683)
|++|+++ +|.-. +...+..+++|+.|+++.|.+.+.
T Consensus 333 L~~L~l~---~n~l~--------~~~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 333 LQRLFFY---NNKVS--------DVSSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CCEEECC---SSCCC--------CCGGGTTCTTCCEEECCSSCCCBC
T ss_pred CCEeECC---CCccC--------CchhhccCCCCCEEeCCCCccCcc
Confidence 7777777 66211 134566777777777777776654
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=8.1e-21 Score=210.64 Aligned_cols=423 Identities=13% Similarity=0.063 Sum_probs=235.3
Q ss_pred CCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHH
Q 038791 115 PGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQE 194 (683)
Q Consensus 115 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~ 194 (683)
++|++|+++++.. .+..+..+..+++|++|++++|.+. +..|..+..++ +|++|+|++|. ++.
T Consensus 21 ~~L~~L~Ls~n~i------~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~----~L~~L~Ls~N~----l~~-- 83 (520)
T 2z7x_B 21 QKTTILNISQNYI------SELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQ----ELEYLDLSHNK----LVK-- 83 (520)
T ss_dssp TTCSEEECCSSCC------CCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCT----TCCEEECCSSC----CCE--
T ss_pred ccccEEECCCCcc------cccChhhccccccccEEecCCCccC-CcChHHhhccc----CCCEEecCCCc----eee--
Confidence 6789999986652 3334457788899999999988763 33344455554 99999999775 321
Q ss_pred HHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHH
Q 038791 195 IREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQ 274 (683)
Q Consensus 195 l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~ 274 (683)
++.. .+++|++|+++. +.++...+......+++|++|+++++ .++...
T Consensus 84 lp~~--~l~~L~~L~L~~-------N~l~~~~~p~~~~~l~~L~~L~L~~n--------------------~l~~~~--- 131 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSF-------NAFDALPICKEFGNMSQLKFLGLSTT--------------------HLEKSS--- 131 (520)
T ss_dssp EECC--CCCCCSEEECCS-------SCCSSCCCCGGGGGCTTCCEEEEEES--------------------SCCGGG---
T ss_pred cCcc--ccCCccEEeccC-------CccccccchhhhccCCcceEEEecCc--------------------ccchhh---
Confidence 2222 678899999831 23332111112347889999999864 344322
Q ss_pred HHhCCCCC--cEEEeccccCc--CCChhHHHHHHhcCCCCc----EEEecCcccccccccccccccccCCCCcEEEeccC
Q 038791 275 LFSGLPLL--EELVLDVCKNV--RDSGPVLEVLKSKCSSLK----VLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNC 346 (683)
Q Consensus 275 l~~~~~~L--~~L~L~~c~~l--~~~~~~l~~l~~~~~~L~----~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~ 346 (683)
+..+++| ++|+++++ .+ +... + ..++.|+ .+++.++.... ......+..+++|+.|+++++
T Consensus 132 -~~~l~~L~L~~L~l~~n-~l~~~~~~---~---~~l~~l~~~~l~l~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 132 -VLPIAHLNISKVLLVLG-ETYGEKED---P---EGLQDFNTESLHIVFPTNKEFH---FILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp -GGGGTTSCEEEEEEEEC-TTTTSSCC---T---TTTTTCCEEEEEEECCSSSCCC---CCCCCCCTTCSEEEECCEEEC
T ss_pred -ccccccceeeEEEeecc-cccccccc---c---ccccccccceEEEEeccCcchh---hhhhhhhhcccceeecccccc
Confidence 3456677 99999885 44 2211 1 1233333 33444322211 111223457889999999886
Q ss_pred CC---CC--HHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHh--cccCccEEEeecccccChhhHHHHHH-----hc
Q 038791 347 GD---LS--DMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAAL--RRETLVEMKISCCKQLGAVASCKALD-----LV 414 (683)
Q Consensus 347 ~~---lt--~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~--~~~~L~~L~l~~c~~l~~~~~l~~l~-----~~ 414 (683)
.. +. ...+..+. .+++|+.|++++|. +++..+..+... . ++|++|++++|...+..+ ... ..
T Consensus 201 ~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p---~~~~~~~~~~ 274 (520)
T 2z7x_B 201 LEDNKCSYFLSILAKLQ-TNPKLSNLTLNNIE-TTWNSFIRILQLVWH-TTVWYFSISNVKLQGQLD---FRDFDYSGTS 274 (520)
T ss_dssp CSTTTTHHHHHHHHGGG-GCTTCCEEEEEEEE-EEHHHHHHHHHHHHT-SSCSEEEEEEEEEESCCC---CCCCCCCSCC
T ss_pred ccccccceeecchhhhc-cccchhhccccccc-cCHHHHHHHHHHhhh-CcccEEEeecccccCccc---cchhhccccc
Confidence 31 10 11222333 48899999999888 787766665543 3 689999999886432111 111 34
Q ss_pred CCCccEEEEeeecCCh--hhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceee
Q 038791 415 RDRIEKLHIDCVWDGL--ELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLS 492 (683)
Q Consensus 415 ~~~L~~L~L~c~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 492 (683)
+++|+.++++.+.+.. ..+.... ...+++.+.+..+. +.. ..+. ..+++|+.|+
T Consensus 275 l~~L~~l~l~~n~~~~p~~~~~~~~------------------~~~~L~~L~l~~n~--l~~---~~~~-~~l~~L~~L~ 330 (520)
T 2z7x_B 275 LKALSIHQVVSDVFGFPQSYIYEIF------------------SNMNIKNFTVSGTR--MVH---MLCP-SKISPFLHLD 330 (520)
T ss_dssp CCEEEEEEEEECCCCSCTHHHHHHH------------------HTCCCSEEEEESSC--CCC---CCCC-SSCCCCCEEE
T ss_pred CceeEeccccccceecchhhhhccc------------------ccCceeEEEcCCCc--ccc---ccch-hhCCcccEEE
Confidence 5777777777444311 1111110 11234444442211 100 0000 2366777777
Q ss_pred eeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccch--hhhhccCcccccccccccccceeecccCC-CC
Q 038791 493 IWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFG--LSCLTRYPQLTKLRLEFGETIGYALTAPG-GE 569 (683)
Q Consensus 493 L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~g~~~~~p~-~~ 569 (683)
++ ++.+++..+..+.++++|++|+++ +|... .++ +..+..+++|+.|+++.|.+.+.. |. .+
T Consensus 331 Ls---~n~l~~~~~~~~~~l~~L~~L~L~---~N~l~------~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l---~~~~~ 395 (520)
T 2z7x_B 331 FS---NNLLTDTVFENCGHLTELETLILQ---MNQLK------ELSKIAEMTTQMKSLQQLDISQNSVSYDE---KKGDC 395 (520)
T ss_dssp CC---SSCCCTTTTTTCCCCSSCCEEECC---SSCCC------BHHHHHHHHTTCTTCCEEECCSSCCBCCG---GGCSC
T ss_pred eE---CCccChhhhhhhccCCCCCEEEcc---CCccC------ccccchHHHhhCCCCCEEECCCCcCCccc---ccchh
Confidence 63 366666555566777777777777 66211 111 345667777777777777766522 22 24
Q ss_pred CCchhhHHHhhcccce-------e--eeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchhhHHHH-HHhc
Q 038791 570 TDLTLWDRFFFNGIGN-------L--RLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMM-FFTR 639 (683)
Q Consensus 570 ~~l~~l~~~~l~~~~~-------l--~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~~~~~~-~~~~ 639 (683)
..++.++.+++++..- + +|..| ++..|+++ ++|.. +..+++|+.|++++|.-..+-. .|..
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L------~Ls~N~l~-~ip~~--~~~l~~L~~L~L~~N~l~~l~~~~~~~ 466 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVL------DLHSNKIK-SIPKQ--VVKLEALQELNVASNQLKSVPDGIFDR 466 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCCTTCCEE------ECCSSCCC-CCCGG--GGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCccCCEEECcCCCCCcchhhhhcccCCEE------ECCCCccc-ccchh--hhcCCCCCEEECCCCcCCccCHHHhcc
Confidence 4555555555544211 0 12222 33556666 66665 4577777777777775432222 2456
Q ss_pred CCcccccccccc
Q 038791 640 MPNVRDVQLRED 651 (683)
Q Consensus 640 ~~~~~~~~~~~~ 651 (683)
+++|+.+.+..-
T Consensus 467 l~~L~~L~l~~N 478 (520)
T 2z7x_B 467 LTSLQKIWLHTN 478 (520)
T ss_dssp CTTCCEEECCSS
T ss_pred CCcccEEECcCC
Confidence 677777766543
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=4e-21 Score=225.13 Aligned_cols=437 Identities=17% Similarity=0.106 Sum_probs=220.3
Q ss_pred CCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCCh-hHHHhhcCccCCCccEEEeccCCCCCCCCHH
Q 038791 115 PGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDL-PPVLRAYPEKSANLTCLNLLTTSFTEGFKAQ 193 (683)
Q Consensus 115 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~ 193 (683)
++|++|+|+++... ...+..+..+++|++|+|++|... ..+ +..+..+ ++|++|+|++|. +...
T Consensus 24 ~~l~~LdLs~N~i~------~i~~~~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L----~~L~~L~Ls~N~----l~~~ 88 (844)
T 3j0a_A 24 NTTERLLLSFNYIR------TVTASSFPFLEQLQLLELGSQYTP-LTIDKEAFRNL----PNLRILDLGSSK----IYFL 88 (844)
T ss_dssp TTCCEEEEESCCCC------EECSSSCSSCCSCSEEEECTTCCC-CEECTTTTSSC----TTCCEEECTTCC----CCEE
T ss_pred CCcCEEECCCCcCC------ccChhHCcccccCeEEeCCCCCCc-cccCHHHhcCC----CCCCEEECCCCc----Cccc
Confidence 57888888865522 222334567888888888887542 222 2333334 488888888765 2211
Q ss_pred HHHHHHhhCCCCceEEeceecCCCCccccCHHHHHH-HHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHH
Q 038791 194 EIREITAACPSLNKLLVACTFDPRYIGFVNDETLSA-IATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGL 272 (683)
Q Consensus 194 ~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~-l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l 272 (683)
.+..+..+++|++|+++. +.+++..+.. ...++++|++|+++++. ++....
T Consensus 89 -~p~~~~~l~~L~~L~Ls~-------n~l~~~~~~~~~~~~L~~L~~L~Ls~N~--------------------l~~~~~ 140 (844)
T 3j0a_A 89 -HPDAFQGLFHLFELRLYF-------CGLSDAVLKDGYFRNLKALTRLDLSKNQ--------------------IRSLYL 140 (844)
T ss_dssp -CTTSSCSCSSCCCEECTT-------CCCSSCCSTTCCCSSCSSCCEEEEESCC--------------------CCCCCC
T ss_pred -CHhHccCCcccCEeeCcC-------CCCCcccccCccccccCCCCEEECCCCc--------------------cccccc
Confidence 122345778888888831 1333211111 12477888888888652 211111
Q ss_pred HHHHhCCCCCcEEEeccccCcCCCh-hHHHHHHhcCCCCcEEEecCcccccccccccccccccCCC------CcEEEecc
Q 038791 273 IQLFSGLPLLEELVLDVCKNVRDSG-PVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGG------LESLSIKN 345 (683)
Q Consensus 273 ~~l~~~~~~L~~L~L~~c~~l~~~~-~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~------L~~L~L~~ 345 (683)
...+..+++|++|+++++ .++... ..+..+.. ++|+.|+++++.- ....+..++.+++ |+.|++++
T Consensus 141 ~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~--~~L~~L~L~~n~l----~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 213 (844)
T 3j0a_A 141 HPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQG--KTLSFFSLAANSL----YSRVSVDWGKCMNPFRNMVLEILDVSG 213 (844)
T ss_dssp CGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHH--CSSCCCEECCSBS----CCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred chhHhhCCCCCEEECCCC-cCCeeCHHHcccccC--CccceEECCCCcc----ccccccchhhcCCccccCceeEEecCC
Confidence 123567888888888873 444321 11222211 6788888876432 2233334444443 78888877
Q ss_pred CCCCCHHHHHHHHhc-------------------------------------CCCCcEEEecCCCCCCHHHHHHHHHhcc
Q 038791 346 CGDLSDMGLVAIGRG-------------------------------------CRRLIKFELEGCKNVTVDGLRTMAALRR 388 (683)
Q Consensus 346 ~~~lt~~~l~~l~~~-------------------------------------~~~L~~L~L~~c~~it~~~l~~l~~~~~ 388 (683)
+. +++.....+... +++|+.|++++|. ++......+ ..+
T Consensus 214 n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~-~~l- 289 (844)
T 3j0a_A 214 NG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVF-ETL- 289 (844)
T ss_dssp CC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCS-SSC-
T ss_pred Cc-CchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhh-hcC-
Confidence 63 343322222211 2456666665554 332211111 112
Q ss_pred cCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCC
Q 038791 389 ETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEG 468 (683)
Q Consensus 389 ~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~ 468 (683)
++|+.|++++|......+ .....+++|+.|+++.+.++.. ....+..+++|+.+.+..+
T Consensus 290 ~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~N~l~~~------------------~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIAD---EAFYGLDNLQVLNLSYNLLGEL------------------YSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp CCCCEEEEESCCCCEECT---TTTTTCSSCCEEEEESCCCSCC------------------CSCSCSSCTTCCEEECCSC
T ss_pred CCCCEEECCCCcCCCCCh---HHhcCCCCCCEEECCCCCCCcc------------------CHHHhcCCCCCCEEECCCC
Confidence 556666666554321100 0112345566666653322100 0012345566777666433
Q ss_pred CCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCc-------------
Q 038791 469 GNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDR------------- 535 (683)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~------------- 535 (683)
. ++....... ..+++|+.|+++ ++.++. +..+++|++|+++ +|+...-|...
T Consensus 349 ~---i~~~~~~~~-~~l~~L~~L~Ls---~N~l~~-----i~~~~~L~~L~l~---~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 349 H---IAIIQDQTF-KFLEKLQTLDLR---DNALTT-----IHFIPSIPDIFLS---GNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp C---CCCCCSSCS-CSCCCCCEEEEE---TCCSCC-----CSSCCSCSEEEEE---SCCCCCCCCCCTTCCEEECCSCCC
T ss_pred C---CCccChhhh-cCCCCCCEEECC---CCCCCc-----ccCCCCcchhccC---CCCcccccccccccceeecccCcc
Confidence 2 111111111 236788888864 355443 2336667777766 55432222110
Q ss_pred -cch-hhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhcc---------------ccee-eeccccCCCCC
Q 038791 536 -AFG-LSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNG---------------IGNL-RLNELDYWPAQ 597 (683)
Q Consensus 536 -~~~-~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~---------------~~~l-~l~~l~~~~~~ 597 (683)
..+ +..+..+++|+.|+++.|.+.+... +.....++.|+.+++++ ++.+ +|..|
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L------ 485 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSG--DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL------ 485 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCS--SSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECC------
T ss_pred ccCchhhhhhcCCccceeeCCCCccccccc--ccccccCCccccccCCCCccccccccccchhhhcCcccccEE------
Confidence 000 2234578888888888888775321 11223345555555543 2233 34444
Q ss_pred CcCccCcccCcccchHHHHhhhhhhhhhccchhhHHHHHHhcCCccccccccccc
Q 038791 598 DRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNVRDVQLREDY 652 (683)
Q Consensus 598 ~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (683)
++..|++++..|.. ++++++|+.|++++|.-.......+. ++|+.+.|+.-.
T Consensus 486 ~Ls~N~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 486 YLNHNYLNSLPPGV--FSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQ 537 (844)
T ss_dssp CCCHHHHTTCCTTS--SSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEEC
T ss_pred ECCCCcccccChhH--ccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCc
Confidence 34566666655554 67777788888887753211111111 566666555443
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=5.6e-20 Score=200.29 Aligned_cols=335 Identities=14% Similarity=0.077 Sum_probs=204.6
Q ss_pred CCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccCH
Q 038791 145 ECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVND 224 (683)
Q Consensus 145 ~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~ 224 (683)
++|++|+|+++.+. +..+..+..+ ++|++|+|++|.....+.. ..+..+++|++|+++. +.++.
T Consensus 30 ~~l~~L~Ls~n~i~-~~~~~~~~~l----~~L~~L~L~~n~~~~~i~~----~~~~~l~~L~~L~Ls~-------n~l~~ 93 (455)
T 3v47_A 30 AHVNYVDLSLNSIA-ELNETSFSRL----QDLQFLKVEQQTPGLVIRN----NTFRGLSSLIILKLDY-------NQFLQ 93 (455)
T ss_dssp TTCCEEECCSSCCC-EECTTTTSSC----TTCCEEECCCCSTTCEECT----TTTTTCTTCCEEECTT-------CTTCE
T ss_pred CccCEEEecCCccC-cCChhHhccC----ccccEEECcCCcccceECc----ccccccccCCEEeCCC-------CccCc
Confidence 68999999998763 3223334444 4999999997652112212 2246789999999941 23332
Q ss_pred HHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHH-HHHhCCCCCcEEEeccccCcCCChhHHHHH
Q 038791 225 ETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLI-QLFSGLPLLEELVLDVCKNVRDSGPVLEVL 303 (683)
Q Consensus 225 ~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~-~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l 303 (683)
.....+ ..+++|++|++++| .+++.... ..+..+++|++|+++++ .++... ...+
T Consensus 94 ~~~~~~-~~l~~L~~L~L~~n--------------------~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~--~~~~ 149 (455)
T 3v47_A 94 LETGAF-NGLANLEVLTLTQC--------------------NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQ--PASF 149 (455)
T ss_dssp ECTTTT-TTCTTCCEEECTTS--------------------CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCC--CCGG
T ss_pred cChhhc-cCcccCCEEeCCCC--------------------CCCccccCcccccCcccCCEEECCCC-ccCccC--cccc
Confidence 222223 47899999999875 34332222 12567899999999984 565432 1123
Q ss_pred HhcCCCCcEEEecCcccccccccccccccccC--CCCcEEEeccCCCCCHHHH--------HHHHhcCCCCcEEEecCCC
Q 038791 304 KSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLC--GGLESLSIKNCGDLSDMGL--------VAIGRGCRRLIKFELEGCK 373 (683)
Q Consensus 304 ~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~--~~L~~L~L~~~~~lt~~~l--------~~l~~~~~~L~~L~L~~c~ 373 (683)
...+++|++|+++++.- .+..+..+..+ ++|+.|+++++. +++... ..+. .+++|+.|++++|.
T Consensus 150 ~~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKV----KSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNG 223 (455)
T ss_dssp GGGCTTCCEEECTTCCB----SCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTT-TTCEEEEEECTTSC
T ss_pred cCCCCcccEEeCCCCcc----cccChhhhhccccccccccccccCc-ccccchhhcccccccccc-ccceeeeEecCCCc
Confidence 56789999999998532 22334444433 688999998874 433211 1111 25789999999998
Q ss_pred CCCHHHHHHHHHhc-ccCccEEEeecccccChhh---------HHHHHHhcCCCccEEEEeeecCChhhHHHHhhhcccc
Q 038791 374 NVTVDGLRTMAALR-RETLVEMKISCCKQLGAVA---------SCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSF 443 (683)
Q Consensus 374 ~it~~~l~~l~~~~-~~~L~~L~l~~c~~l~~~~---------~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l 443 (683)
+++.....+.... .++|+.|++++|....... ........+++|+.|+++.+.++....
T Consensus 224 -l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------- 292 (455)
T 3v47_A 224 -FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK---------- 292 (455)
T ss_dssp -CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT----------
T ss_pred -ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch----------
Confidence 8887777766542 1789999998875432110 000001123689999988444321100
Q ss_pred CcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeeccc
Q 038791 444 DLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKME 523 (683)
Q Consensus 444 ~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~ 523 (683)
..+..+++|+.+.+..+. ++......+ ..+++|+.|+++ ++.+++.....+.++++|++|+++
T Consensus 293 --------~~~~~l~~L~~L~Ls~n~---l~~~~~~~~-~~l~~L~~L~Ls---~N~l~~~~~~~~~~l~~L~~L~Ls-- 355 (455)
T 3v47_A 293 --------SVFSHFTDLEQLTLAQNE---INKIDDNAF-WGLTHLLKLNLS---QNFLGSIDSRMFENLDKLEVLDLS-- 355 (455)
T ss_dssp --------TTTTTCTTCCEEECTTSC---CCEECTTTT-TTCTTCCEEECC---SSCCCEECGGGGTTCTTCCEEECC--
T ss_pred --------hhcccCCCCCEEECCCCc---ccccChhHh-cCcccCCEEECC---CCccCCcChhHhcCcccCCEEECC--
Confidence 123455667777664332 222222122 236788888874 467777766667888888888888
Q ss_pred CCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 524 GDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 524 ~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+|+.. ...+..+..+++|+.|+++.|.+.+
T Consensus 356 -~N~l~------~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 356 -YNHIR------ALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp -SSCCC------EECTTTTTTCTTCCEEECCSSCCSC
T ss_pred -CCccc------ccChhhccccccccEEECCCCcccc
Confidence 77311 3335667788888888888887775
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=4.8e-21 Score=224.49 Aligned_cols=284 Identities=15% Similarity=0.046 Sum_probs=142.3
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
++|+.|+++++ .++.. .......+++|+.|+++++. .....+..+..+++|++|++++|. ++......+.
T Consensus 266 ~~L~~L~Ls~n-~l~~~---~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~- 335 (844)
T 3j0a_A 266 SSVRHLDLSHG-FVFSL---NSRVFETLKDLKVLNLAYNK----INKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFY- 335 (844)
T ss_dssp SCCCEEECTTC-CCCEE---CSCCSSSCCCCCEEEEESCC----CCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCS-
T ss_pred CCccEEECCCC-ccccc---ChhhhhcCCCCCEEECCCCc----CCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhc-
Confidence 56777777763 34322 11223456777777777632 222333455667777777777764 4432222222
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhh
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESK 439 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~ 439 (683)
.+++|+.|++++|. ++......+ ..+ ++|+.|++++|... ... .+++|+.|+++.+.++. +..
T Consensus 336 ~l~~L~~L~L~~N~-i~~~~~~~~-~~l-~~L~~L~Ls~N~l~-~i~-------~~~~L~~L~l~~N~l~~--l~~---- 398 (844)
T 3j0a_A 336 GLPKVAYIDLQKNH-IAIIQDQTF-KFL-EKLQTLDLRDNALT-TIH-------FIPSIPDIFLSGNKLVT--LPK---- 398 (844)
T ss_dssp SCTTCCEEECCSCC-CCCCCSSCS-CSC-CCCCEEEEETCCSC-CCS-------SCCSCSEEEEESCCCCC--CCC----
T ss_pred CCCCCCEEECCCCC-CCccChhhh-cCC-CCCCEEECCCCCCC-ccc-------CCCCcchhccCCCCccc--ccc----
Confidence 36777777777775 443322222 123 67777777766433 211 14677777777444320 000
Q ss_pred ccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccC-CCCCCCccee
Q 038791 440 VRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVG-LDDCPVLEEI 518 (683)
Q Consensus 440 ~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~-L~~~~~L~~L 518 (683)
...+++.+.+..+. +........+ ..+++|+.|+++ +|.+++..... ...+++|+.|
T Consensus 399 ----------------~~~~l~~L~ls~N~--l~~l~~~~~~-~~l~~L~~L~Ls---~N~l~~~~~~~~~~~~~~L~~L 456 (844)
T 3j0a_A 399 ----------------INLTANLIHLSENR--LENLDILYFL-LRVPHLQILILN---QNRFSSCSGDQTPSENPSLEQL 456 (844)
T ss_dssp ----------------CCTTCCEEECCSCC--CCSSTTHHHH-TTCTTCCEEEEE---SCCCCCCCSSSSSCSCTTCCBC
T ss_pred ----------------cccccceeecccCc--cccCchhhhh-hcCCccceeeCC---CCcccccccccccccCCccccc
Confidence 01123333332111 1000111111 135667777653 35554433322 3456667777
Q ss_pred eecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhccc--cee-------eec
Q 038791 519 RIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGI--GNL-------RLN 589 (683)
Q Consensus 519 ~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~--~~l-------~l~ 589 (683)
+++ +|.... .......+..+.++++|+.|+|+.|.+++. .|..+.+++.|+.+++++. ..+ +|.
T Consensus 457 ~Ls---~N~l~~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~ 529 (844)
T 3j0a_A 457 FLG---ENMLQL-AWETELCWDVFEGLSHLQVLYLNHNYLNSL---PPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLE 529 (844)
T ss_dssp EEE---SCCCSS-SCCSCCCSSCSSCBCCEECCCCCHHHHTTC---CTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCC
T ss_pred cCC---CCcccc-ccccccchhhhcCcccccEEECCCCccccc---ChhHccchhhhheeECCCCCCCccChhhhhcccc
Confidence 776 553111 000011133455666677777766666653 2444555666655555441 100 122
Q ss_pred cccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 590 ELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 590 ~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
.| ++..|++++.+|.. + .+|+.|++++|..
T Consensus 530 ~L------~Ls~N~l~~~~~~~--~---~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 530 IL------DISRNQLLAPNPDV--F---VSLSVLDITHNKF 559 (844)
T ss_dssp EE------EEEEECCCCCCSCC--C---SSCCEEEEEEECC
T ss_pred EE------ECCCCcCCCCChhH--h---CCcCEEEecCCCc
Confidence 22 45678888887765 4 3788999998763
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=7.6e-20 Score=211.33 Aligned_cols=344 Identities=13% Similarity=0.054 Sum_probs=200.4
Q ss_pred HHHHhhcCCCCCEEEeeCccccCC----------------ChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHh
Q 038791 137 FIPLFEHCECLKSIDLSNFYFWTE----------------DLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITA 200 (683)
Q Consensus 137 l~~~~~~~~~L~~L~Ls~~~~~~~----------------~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~ 200 (683)
++..+.++++|++|+|++|.+..+ .+|..+. + ..+++|++|+|++|.....+. ..+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~-f-~~L~~L~~L~Ls~N~l~~~iP-----~~l~ 512 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS-W-SNLKDLTDVELYNCPNMTQLP-----DFLY 512 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC-G-GGCTTCCEEEEESCTTCCSCC-----GGGG
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh-h-ccCCCCCEEECcCCCCCccCh-----HHHh
Confidence 455677888888888888876321 1443332 0 033488888888665322232 3346
Q ss_pred hCCCCceEEeceecCCCCccc-cCH-HHHHHHH------hcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHH
Q 038791 201 ACPSLNKLLVACTFDPRYIGF-VND-ETLSAIA------TNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGL 272 (683)
Q Consensus 201 ~~~~L~~L~L~c~~~~~~~~~-l~~-~~l~~l~------~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l 272 (683)
.+++|+.|+++ .+. ++. .....+. ..+++|++|+++++. ++ .+
T Consensus 513 ~L~~L~~L~Ls-------~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--------------------L~--~i 563 (876)
T 4ecn_A 513 DLPELQSLNIA-------CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--------------------LE--EF 563 (876)
T ss_dssp GCSSCCEEECT-------TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--------------------CC--BC
T ss_pred CCCCCCEEECc-------CCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--------------------CC--cc
Confidence 78888888884 223 665 3333332 245688888888652 22 23
Q ss_pred HH--HHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCC-CcEEEeccCCCC
Q 038791 273 IQ--LFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGG-LESLSIKNCGDL 349 (683)
Q Consensus 273 ~~--l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~-L~~L~L~~~~~l 349 (683)
+. .+..+++|+.|+++++ .++. ++ .+..+++|+.|+++++.- . ..+..+..+++ |++|++++|. +
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N-~l~~----lp-~~~~L~~L~~L~Ls~N~l----~-~lp~~l~~l~~~L~~L~Ls~N~-L 631 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHN-KVRH----LE-AFGTNVKLTDLKLDYNQI----E-EIPEDFCAFTDQVEGLGFSHNK-L 631 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTS-CCCB----CC-CCCTTSEESEEECCSSCC----S-CCCTTSCEECTTCCEEECCSSC-C
T ss_pred CChhhhhcCCCCCEEECCCC-Cccc----ch-hhcCCCcceEEECcCCcc----c-cchHHHhhccccCCEEECcCCC-C
Confidence 33 4567888888888874 5552 33 345678888888887432 1 34556777777 8888888875 5
Q ss_pred CHHHHHHHHhcC--CCCcEEEecCCCCCCHHHHHHH----HH-hcccCccEEEeecccccChhhHHHHHHhcCCCccEEE
Q 038791 350 SDMGLVAIGRGC--RRLIKFELEGCKNVTVDGLRTM----AA-LRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLH 422 (683)
Q Consensus 350 t~~~l~~l~~~~--~~L~~L~L~~c~~it~~~l~~l----~~-~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~ 422 (683)
+. +....... ++|+.|++++|. +++.. +.+ .. .+ ++|+.|++++|... ..+ ..+...+++|+.|+
T Consensus 632 ~~--lp~~~~~~~~~~L~~L~Ls~N~-l~g~i-p~l~~~l~~~~~-~~L~~L~Ls~N~L~-~lp--~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 632 KY--IPNIFNAKSVYVMGSVDFSYNK-IGSEG-RNISCSMDDYKG-INASTVTLSYNEIQ-KFP--TELFATGSPISTII 703 (876)
T ss_dssp CS--CCSCCCTTCSSCEEEEECCSSC-TTTTS-SSCSSCTTTCCC-CCEEEEECCSSCCC-SCC--HHHHHTTCCCSEEE
T ss_pred Cc--CchhhhccccCCCCEEECcCCc-CCCcc-ccchhhhccccC-CCcCEEEccCCcCC-ccC--HHHHccCCCCCEEE
Confidence 51 22111112 348888888887 54421 111 00 11 47888888877654 221 12334668888888
Q ss_pred EeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCcccccccccccc-ccCCCCceeeeeeeccccC
Q 038791 423 IDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCC-KTWKGLKCLSIWIEVGQLL 501 (683)
Q Consensus 423 L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~l 501 (683)
|+.+.++ .++.+... +......+|++|+.+.+..+. ++ ..+..++ ..+++|+.|+|+ +|.+
T Consensus 704 Ls~N~L~-----~ip~~~~~------~~~~~l~nl~~L~~L~Ls~N~---L~-~lp~~l~~~~l~~L~~L~Ls---~N~L 765 (876)
T 4ecn_A 704 LSNNLMT-----SIPENSLK------PKDGNYKNTYLLTTIDLRFNK---LT-SLSDDFRATTLPYLSNMDVS---YNCF 765 (876)
T ss_dssp CCSCCCS-----CCCTTSSS------CTTSCCTTGGGCCEEECCSSC---CC-CCCGGGSTTTCTTCCEEECC---SSCC
T ss_pred CCCCcCC-----ccChHHhc------cccccccccCCccEEECCCCC---Cc-cchHHhhhccCCCcCEEEeC---CCCC
Confidence 8855443 11111000 000112345577777774433 22 2222222 247888888874 4777
Q ss_pred CCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccccccc
Q 038791 502 TPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGET 558 (683)
Q Consensus 502 ~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 558 (683)
+++ +..+.++++|+.|+++ +|+.++........|..+..+++|+.|+|+.|.+
T Consensus 766 ~~l-p~~l~~L~~L~~L~Ls---~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 766 SSF-PTQPLNSSQLKAFGIR---HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp SSC-CCGGGGCTTCCEEECC---CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred Ccc-chhhhcCCCCCEEECC---CCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 764 4456788889999888 6542222211122256778888888888888877
No 29
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=1.7e-18 Score=180.45 Aligned_cols=254 Identities=16% Similarity=0.194 Sum_probs=187.0
Q ss_pred CccEEEeccccccccCCCcccHHHHhhcC--CCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHH
Q 038791 116 GLRHVKLVRWHQRLQAPLGAEFIPLFEHC--ECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQ 193 (683)
Q Consensus 116 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~~--~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~ 193 (683)
.++.++++++... ...+..+ ++++.|+++++.+. +..+. +. .+++|++|++++|. +++.
T Consensus 48 ~~~~l~l~~~~~~---------~~~~~~~~~~~l~~L~l~~n~l~-~~~~~-~~----~~~~L~~L~L~~~~----l~~~ 108 (336)
T 2ast_B 48 LWQTLDLTGKNLH---------PDVTGRLLSQGVIAFRCPRSFMD-QPLAE-HF----SPFRVQHMDLSNSV----IEVS 108 (336)
T ss_dssp TSSEEECTTCBCC---------HHHHHHHHHTTCSEEECTTCEEC-SCCCS-CC----CCBCCCEEECTTCE----ECHH
T ss_pred hheeeccccccCC---------HHHHHhhhhccceEEEcCCcccc-ccchh-hc----cCCCCCEEEccCCC----cCHH
Confidence 4788999854421 2334444 78999999998763 33222 11 34699999999654 7777
Q ss_pred HHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHH
Q 038791 194 EIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLI 273 (683)
Q Consensus 194 ~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~ 273 (683)
++..++..+++|++|+++ .+.+++..+..+. .+++|++|++++| ..+++.+++
T Consensus 109 ~~~~~~~~~~~L~~L~L~-------~~~l~~~~~~~l~-~~~~L~~L~L~~~-------------------~~l~~~~l~ 161 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLE-------GLRLSDPIVNTLA-KNSNLVRLNLSGC-------------------SGFSEFALQ 161 (336)
T ss_dssp HHHHHHTTBCCCSEEECT-------TCBCCHHHHHHHT-TCTTCSEEECTTC-------------------BSCCHHHHH
T ss_pred HHHHHHhhCCCCCEEeCc-------CcccCHHHHHHHh-cCCCCCEEECCCC-------------------CCCCHHHHH
Confidence 788888999999999994 2368888888776 6999999999876 257777888
Q ss_pred HHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCC-CCcEEEecCcc-cccccccccccccccCCCCcEEEeccCCCCCH
Q 038791 274 QLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCS-SLKVLKLGQFH-GVCLAIGWQLDGVSLCGGLESLSIKNCGDLSD 351 (683)
Q Consensus 274 ~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~-~L~~L~L~~c~-~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~ 351 (683)
.++..+++|++|++++|..+++.+ +......++ +|++|++++|. .+++ ...+..+..+++|++|++++|..+++
T Consensus 162 ~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~l~~~L~~L~l~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~l~~ 237 (336)
T 2ast_B 162 TLLSSCSRLDELNLSWCFDFTEKH--VQVAVAHVSETITQLNLSGYRKNLQK--SDLSTLVRRCPNLVHLDLSDSVMLKN 237 (336)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHH--HHHHHHHSCTTCCEEECCSCGGGSCH--HHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred HHHhcCCCCCEEcCCCCCCcChHH--HHHHHHhcccCCCEEEeCCCcccCCH--HHHHHHHhhCCCCCEEeCCCCCcCCH
Confidence 888889999999999976776544 667778899 99999999875 3432 12334456789999999999876788
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecC
Q 038791 352 MGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWD 428 (683)
Q Consensus 352 ~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~ 428 (683)
..+..++. +++|++|++++|..+++.++..+.. + ++|+.|++++| ++ ...+..+... |+.|+++|+.+
T Consensus 238 ~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~-~-~~L~~L~l~~~--i~-~~~~~~l~~~---l~~L~l~~n~l 305 (336)
T 2ast_B 238 DCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGE-I-PTLKTLQVFGI--VP-DGTLQLLKEA---LPHLQINCSHF 305 (336)
T ss_dssp GGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGG-C-TTCCEEECTTS--SC-TTCHHHHHHH---STTSEESCCCS
T ss_pred HHHHHHhC-CCCCCEeeCCCCCCCCHHHHHHHhc-C-CCCCEEeccCc--cC-HHHHHHHHhh---CcceEEecccC
Confidence 77777765 8999999999997788887766654 4 89999999988 53 3335555543 44455775554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=1e-17 Score=182.85 Aligned_cols=324 Identities=18% Similarity=0.190 Sum_probs=221.9
Q ss_pred ccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCC
Q 038791 112 PQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFK 191 (683)
Q Consensus 112 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~ 191 (683)
..+++|++|+++++.... +.+ +..+++|++|+++++.+. ..+. +..+ ++|++|++++|. ++
T Consensus 65 ~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~--~~~~-~~~l----~~L~~L~L~~n~----l~ 125 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTD-------ITP-LKNLTKLVDILMNNNQIA--DITP-LANL----TNLTGLTLFNNQ----IT 125 (466)
T ss_dssp GGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCC--CCGG-GTTC----TTCCEEECCSSC----CC
T ss_pred hhhcCCCEEECCCCccCC-------chh-hhccccCCEEECCCCccc--cChh-hcCC----CCCCEEECCCCC----CC
Confidence 568999999999765321 223 788999999999999773 2333 4444 499999999765 32
Q ss_pred HHHHHHHHhhCCCCceEEe-ceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHH
Q 038791 192 AQEIREITAACPSLNKLLV-ACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSRE 270 (683)
Q Consensus 192 ~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~ 270 (683)
+ +.. +..+++|++|++ +|. +++ +.. ...+++|++|++.+. +..
T Consensus 126 ~--~~~-~~~l~~L~~L~l~~n~--------l~~--~~~-~~~l~~L~~L~l~~~---------------------~~~- 169 (466)
T 1o6v_A 126 D--IDP-LKNLTNLNRLELSSNT--------ISD--ISA-LSGLTSLQQLSFGNQ---------------------VTD- 169 (466)
T ss_dssp C--CGG-GTTCTTCSEEEEEEEE--------ECC--CGG-GTTCTTCSEEEEEES---------------------CCC-
T ss_pred C--ChH-HcCCCCCCEEECCCCc--------cCC--Chh-hccCCcccEeecCCc---------------------ccC-
Confidence 2 112 578999999999 443 222 112 348899999999632 111
Q ss_pred HHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCC
Q 038791 271 GLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLS 350 (683)
Q Consensus 271 ~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt 350 (683)
+.. +..+++|++|++++| .+++.. . ...+++|++|+++++.-. ....++.+++|++|++++|. ++
T Consensus 170 -~~~-~~~l~~L~~L~l~~n-~l~~~~----~-l~~l~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~-l~ 234 (466)
T 1o6v_A 170 -LKP-LANLTTLERLDISSN-KVSDIS----V-LAKLTNLESLIATNNQIS------DITPLGILTNLDELSLNGNQ-LK 234 (466)
T ss_dssp -CGG-GTTCTTCCEEECCSS-CCCCCG----G-GGGCTTCSEEECCSSCCC------CCGGGGGCTTCCEEECCSSC-CC
T ss_pred -chh-hccCCCCCEEECcCC-cCCCCh----h-hccCCCCCEEEecCCccc------ccccccccCCCCEEECCCCC-cc
Confidence 111 567899999999985 565532 2 467899999999986431 12236778999999999975 65
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCCh
Q 038791 351 DMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGL 430 (683)
Q Consensus 351 ~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~ 430 (683)
+. ..+. .+++|+.|++++|. +++... + ..+ ++|++|++++|.... ... ...+++|+.|+++.+.++.
T Consensus 235 ~~--~~l~-~l~~L~~L~l~~n~-l~~~~~--~-~~l-~~L~~L~l~~n~l~~-~~~----~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 235 DI--GTLA-SLTNLTDLDLANNQ-ISNLAP--L-SGL-TKLTELKLGANQISN-ISP----LAGLTALTNLELNENQLED 301 (466)
T ss_dssp CC--GGGG-GCTTCSEEECCSSC-CCCCGG--G-TTC-TTCSEEECCSSCCCC-CGG----GTTCTTCSEEECCSSCCSC
T ss_pred cc--hhhh-cCCCCCEEECCCCc-cccchh--h-hcC-CCCCEEECCCCccCc-ccc----ccCCCccCeEEcCCCcccC
Confidence 53 2343 48999999999998 554332 2 335 899999999886543 221 3467899999998444321
Q ss_pred hhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCC
Q 038791 431 ELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLD 510 (683)
Q Consensus 431 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~ 510 (683)
...+..+++|+.+.+..+. +++... + ..+++|+.|+++ ++.+++. ..+.
T Consensus 302 --------------------~~~~~~l~~L~~L~L~~n~---l~~~~~-~--~~l~~L~~L~l~---~n~l~~~--~~l~ 350 (466)
T 1o6v_A 302 --------------------ISPISNLKNLTYLTLYFNN---ISDISP-V--SSLTKLQRLFFY---NNKVSDV--SSLA 350 (466)
T ss_dssp --------------------CGGGGGCTTCSEEECCSSC---CSCCGG-G--GGCTTCCEEECC---SSCCCCC--GGGT
T ss_pred --------------------chhhcCCCCCCEEECcCCc---CCCchh-h--ccCccCCEeECC---CCccCCc--hhhc
Confidence 1124567778888775433 222222 2 248999999974 4677765 4588
Q ss_pred CCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 511 DCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 511 ~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
++++|+.|+++ +|+.. +...+..+++|+.|+++.|.+++
T Consensus 351 ~l~~L~~L~l~---~n~l~--------~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 351 NLTNINWLSAG---HNQIS--------DLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCTTCCEEECC---SSCCC--------BCGGGTTCTTCCEEECCCEEEEC
T ss_pred cCCCCCEEeCC---CCccC--------ccchhhcCCCCCEEeccCCcccC
Confidence 99999999999 88321 22238899999999999998887
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=8.8e-22 Score=221.01 Aligned_cols=449 Identities=16% Similarity=0.049 Sum_probs=251.3
Q ss_pred CCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHH
Q 038791 115 PGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQE 194 (683)
Q Consensus 115 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~ 194 (683)
+++++|+++++... ......+..+++|++|++++|.+. +..+..+.. +++|++|+|++|. ++..
T Consensus 28 ~~l~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~----l~~L~~L~L~~n~----l~~~- 91 (570)
T 2z63_A 28 FSTKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQS----LSHLSTLILTGNP----IQSL- 91 (570)
T ss_dssp SSCCEEECCSCCCC------EECTTTTTTCSSCCEEECTTCCCC-EECTTTTTT----CTTCCEEECTTCC----CCEE-
T ss_pred ccccEEEccCCccC------ccChhHhhCCCCceEEECCCCcCC-ccCcccccC----chhCCEEeCcCCc----CCcc-
Confidence 57999999976532 122335678999999999999753 222222333 4599999999775 2221
Q ss_pred HHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHH
Q 038791 195 IREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQ 274 (683)
Q Consensus 195 l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~ 274 (683)
.+..+..+++|++|+++. +.++...... ...+++|++|+++++. ++...++.
T Consensus 92 ~~~~~~~l~~L~~L~L~~-------n~l~~l~~~~-~~~l~~L~~L~L~~n~--------------------l~~~~lp~ 143 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVE-------TNLASLENFP-IGHLKTLKELNVAHNL--------------------IQSFKLPE 143 (570)
T ss_dssp CTTTTTTCTTCCEEECTT-------SCCCCSTTCS-CTTCTTCCEEECCSSC--------------------CCCCCCCG
T ss_pred CHhhhcCccccccccccc-------cccccCCCcc-ccccccccEEecCCCc--------------------cceecChh
Confidence 012346789999999931 1222211111 2488999999998752 22111223
Q ss_pred HHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCC----cEEEecCcccccccccccccccccCCCCcEEEeccCCCCC
Q 038791 275 LFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSL----KVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLS 350 (683)
Q Consensus 275 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L----~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt 350 (683)
.+..+++|++|+++++ .++... ......+++| +.|+++++.- ....+..+..+ +|+.|+++++. ..
T Consensus 144 ~~~~l~~L~~L~l~~n-~l~~~~---~~~~~~l~~L~~~~~~L~l~~n~l----~~~~~~~~~~~-~L~~L~l~~n~-~~ 213 (570)
T 2z63_A 144 YFSNLTNLEHLDLSSN-KIQSIY---CTDLRVLHQMPLLNLSLDLSLNPM----NFIQPGAFKEI-RLHKLTLRNNF-DS 213 (570)
T ss_dssp GGGGCTTCCEEECTTS-CCCEEC---GGGGHHHHTCTTCCCEEECTTCCC----CEECTTTTTTC-EEEEEEEESCC-SC
T ss_pred hhcccCCCCEEeCcCC-ccceec---HHHccchhccchhhhhcccCCCCc----eecCHHHhccC-cceeEeccccc-cc
Confidence 3567999999999984 554432 1112334555 7899987432 12223333333 79999998864 23
Q ss_pred HHHHHHHHhcCCCCcEEEe--------------------------------cCCCCCCHHHHHHHHHhcccCccEEEeec
Q 038791 351 DMGLVAIGRGCRRLIKFEL--------------------------------EGCKNVTVDGLRTMAALRRETLVEMKISC 398 (683)
Q Consensus 351 ~~~l~~l~~~~~~L~~L~L--------------------------------~~c~~it~~~l~~l~~~~~~~L~~L~l~~ 398 (683)
...+......+++++.+.+ .++..+++.....+ ..+ ++|+.|++++
T Consensus 214 ~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~-~~l-~~L~~L~l~~ 291 (570)
T 2z63_A 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCL-TNVSSFSLVS 291 (570)
T ss_dssp TTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT-GGG-TTCSEEEEES
T ss_pred ccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh-cCc-CcccEEEecC
Confidence 2233333333554443332 22211111111111 123 6666666665
Q ss_pred ccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccC--CcHHHHhhhhhhccccccCCCCcccccc
Q 038791 399 CKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNEL--NDEDDELGLRKKRKFCLPEGGNWHLQIK 476 (683)
Q Consensus 399 c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 476 (683)
|... . ++.....+ +|+.|+++.+.++.-.. .....++.+++... ........+++|+.+.+..+. ++..
T Consensus 292 ~~l~-~---l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~---l~~~ 362 (570)
T 2z63_A 292 VTIE-R---VKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG---LSFK 362 (570)
T ss_dssp CEEC-S---CCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC---CBEE
T ss_pred ccch-h---hhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCccccccccccCCCCCEEeCcCCc---cCcc
Confidence 5432 1 11112223 56666665333321000 01111222222111 000111456677777764332 1111
Q ss_pred c--cccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccch-hhhhccCcccccccc
Q 038791 477 E--NGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFG-LSCLTRYPQLTKLRL 553 (683)
Q Consensus 477 ~--~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~-~~~l~~l~~L~~L~l 553 (683)
. .... ..+++|+.|+++ ++.++..+.. +.++++|++|+++ +|.... .. ...+..+++|+.|++
T Consensus 363 ~~~~~~~-~~~~~L~~L~l~---~n~l~~~~~~-~~~l~~L~~L~l~---~n~l~~------~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 363 GCCSQSD-FGTTSLKYLDLS---FNGVITMSSN-FLGLEQLEHLDFQ---HSNLKQ------MSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp EEEEHHH-HTCSCCCEEECC---SCSEEEEEEE-EETCTTCCEEECT---TSEEES------CTTSCTTTTCTTCCEEEC
T ss_pred ccccccc-cccCccCEEECC---CCcccccccc-ccccCCCCEEEcc---CCcccc------ccchhhhhcCCCCCEEeC
Confidence 1 1111 237888888874 3555555444 7788999999998 773111 11 235778899999999
Q ss_pred cccccceeecccCCCCCCchhhHHHhhcccc-----------ee-eeccccCCCCCCcCccCcccCcccchHHHHhhhhh
Q 038791 554 EFGETIGYALTAPGGETDLTLWDRFFFNGIG-----------NL-RLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLR 621 (683)
Q Consensus 554 ~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~-----------~l-~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~ 621 (683)
+.|.+.+. .|..+.+++.|+.+++++.. .+ +|..| ++..|++++..|.. ++++++|+
T Consensus 429 ~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L------~l~~n~l~~~~~~~--~~~l~~L~ 497 (570)
T 2z63_A 429 SHTHTRVA---FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL------DLSQCQLEQLSPTA--FNSLSSLQ 497 (570)
T ss_dssp TTSCCEEC---CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE------ECTTSCCCEECTTT--TTTCTTCC
T ss_pred cCCccccc---chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE------ECCCCccccCChhh--hhcccCCC
Confidence 99887764 36667778888887776521 22 23333 45667777766766 88899999
Q ss_pred hhhhccchhhHH-HHHHhcCCcccccccccccC
Q 038791 622 KLIIHGTAHEHF-MMFFTRMPNVRDVQLREDYY 653 (683)
Q Consensus 622 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 653 (683)
+|++++|.-... ...|..+|+|+.+.++.-.+
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 999998853322 23467889999998876543
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=4.5e-18 Score=178.14 Aligned_cols=304 Identities=14% Similarity=0.101 Sum_probs=164.1
Q ss_pred cCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCH
Q 038791 113 QWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKA 192 (683)
Q Consensus 113 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~ 192 (683)
.+++|++|++.++.... ++ .+..+++|++|++++|.+. .++. +..+ ++|++|++++|. +++
T Consensus 42 ~l~~L~~L~l~~~~i~~-------~~-~~~~~~~L~~L~l~~n~i~--~~~~-~~~l----~~L~~L~L~~n~----i~~ 102 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-------IQ-GIEYLTNLEYLNLNGNQIT--DISP-LSNL----VKLTNLYIGTNK----ITD 102 (347)
T ss_dssp HHTTCSEEECCSSCCCC-------CT-TGGGCTTCCEEECCSSCCC--CCGG-GTTC----TTCCEEECCSSC----CCC
T ss_pred hcccccEEEEeCCcccc-------ch-hhhhcCCccEEEccCCccc--cchh-hhcC----CcCCEEEccCCc----ccC
Confidence 45778888887654321 11 2566778888888877653 2322 3333 488888888654 222
Q ss_pred HHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHH
Q 038791 193 QEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGL 272 (683)
Q Consensus 193 ~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l 272 (683)
++. +..+++|++|+++. +.+++.. . ...+++|++|++++|..+...
T Consensus 103 --~~~-~~~l~~L~~L~l~~-------n~i~~~~--~-~~~l~~L~~L~l~~n~~~~~~--------------------- 148 (347)
T 4fmz_A 103 --ISA-LQNLTNLRELYLNE-------DNISDIS--P-LANLTKMYSLNLGANHNLSDL--------------------- 148 (347)
T ss_dssp --CGG-GTTCTTCSEEECTT-------SCCCCCG--G-GTTCTTCCEEECTTCTTCCCC---------------------
T ss_pred --chH-HcCCCcCCEEECcC-------CcccCch--h-hccCCceeEEECCCCCCcccc---------------------
Confidence 111 45677777777731 1222211 1 346777777777766432211
Q ss_pred HHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHH
Q 038791 273 IQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDM 352 (683)
Q Consensus 273 ~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~ 352 (683)
.. +..+++|++|++++| .+.+.. . ...+++|+.|+++++.-. ....+..+++|+.|+++++. +++.
T Consensus 149 ~~-~~~l~~L~~L~l~~~-~~~~~~----~-~~~l~~L~~L~l~~n~l~------~~~~~~~l~~L~~L~l~~n~-l~~~ 214 (347)
T 4fmz_A 149 SP-LSNMTGLNYLTVTES-KVKDVT----P-IANLTDLYSLSLNYNQIE------DISPLASLTSLHYFTAYVNQ-ITDI 214 (347)
T ss_dssp GG-GTTCTTCCEEECCSS-CCCCCG----G-GGGCTTCSEEECTTSCCC------CCGGGGGCTTCCEEECCSSC-CCCC
T ss_pred cc-hhhCCCCcEEEecCC-CcCCch----h-hccCCCCCEEEccCCccc------ccccccCCCccceeecccCC-CCCC
Confidence 01 445677777777764 344332 1 356777777777764321 11225566777777777654 4433
Q ss_pred HHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhh
Q 038791 353 GLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLEL 432 (683)
Q Consensus 353 ~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~ 432 (683)
.. + ..+++|++|++++|. +++... + ..+ ++|++|++++|... ... ....+++|+.|+++++.++.
T Consensus 215 ~~--~-~~~~~L~~L~l~~n~-l~~~~~--~-~~l-~~L~~L~l~~n~l~-~~~----~~~~l~~L~~L~l~~n~l~~-- 279 (347)
T 4fmz_A 215 TP--V-ANMTRLNSLKIGNNK-ITDLSP--L-ANL-SQLTWLEIGTNQIS-DIN----AVKDLTKLKMLNVGSNQISD-- 279 (347)
T ss_dssp GG--G-GGCTTCCEEECCSSC-CCCCGG--G-TTC-TTCCEEECCSSCCC-CCG----GGTTCTTCCEEECCSSCCCC--
T ss_pred ch--h-hcCCcCCEEEccCCc-cCCCcc--h-hcC-CCCCEEECCCCccC-CCh----hHhcCCCcCEEEccCCccCC--
Confidence 22 2 336677777777766 443322 2 233 66777777666433 211 12244666666666222100
Q ss_pred HHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCC
Q 038791 433 TESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDC 512 (683)
Q Consensus 433 ~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~ 512 (683)
. ..+ ..+++|+.|+++ ++.+++.....+.++
T Consensus 280 -------------------------------------------~-~~~--~~l~~L~~L~L~---~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 280 -------------------------------------------I-SVL--NNLSQLNSLFLN---NNQLGNEDMEVIGGL 310 (347)
T ss_dssp -------------------------------------------C-GGG--GGCTTCSEEECC---SSCCCGGGHHHHHTC
T ss_pred -------------------------------------------C-hhh--cCCCCCCEEECc---CCcCCCcChhHhhcc
Confidence 0 001 125667777753 355655555556667
Q ss_pred CCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccccccc
Q 038791 513 PVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGET 558 (683)
Q Consensus 513 ~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 558 (683)
++|++|+++ +|+-. +...+..+++|+.|+++.|.+
T Consensus 311 ~~L~~L~L~---~n~l~--------~~~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 311 TNLTTLFLS---QNHIT--------DIRPLASLSKMDSADFANQVI 345 (347)
T ss_dssp TTCSEEECC---SSSCC--------CCGGGGGCTTCSEESSSCC--
T ss_pred ccCCEEEcc---CCccc--------cccChhhhhccceeehhhhcc
Confidence 777777777 66311 122266677777777766653
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=4.5e-18 Score=178.17 Aligned_cols=285 Identities=19% Similarity=0.162 Sum_probs=169.9
Q ss_pred hcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccc
Q 038791 142 EHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGF 221 (683)
Q Consensus 142 ~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~ 221 (683)
..+++|++|+++++.+. .++. +..+ ++|++|++++|. +++ +.. +..+++|++|+++. +.
T Consensus 41 ~~l~~L~~L~l~~~~i~--~~~~-~~~~----~~L~~L~l~~n~----i~~--~~~-~~~l~~L~~L~L~~-------n~ 99 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA--SIQG-IEYL----TNLEYLNLNGNQ----ITD--ISP-LSNLVKLTNLYIGT-------NK 99 (347)
T ss_dssp HHHTTCSEEECCSSCCC--CCTT-GGGC----TTCCEEECCSSC----CCC--CGG-GTTCTTCCEEECCS-------SC
T ss_pred hhcccccEEEEeCCccc--cchh-hhhc----CCccEEEccCCc----ccc--chh-hhcCCcCCEEEccC-------Cc
Confidence 45788999999988763 2322 4444 499999999764 322 112 56788888888831 12
Q ss_pred cCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHH
Q 038791 222 VNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLE 301 (683)
Q Consensus 222 l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~ 301 (683)
+++ +.. ...+++|++|++++|. +++ +.. +..+++|++|++++|..+....
T Consensus 100 i~~--~~~-~~~l~~L~~L~l~~n~--------------------i~~--~~~-~~~l~~L~~L~l~~n~~~~~~~---- 149 (347)
T 4fmz_A 100 ITD--ISA-LQNLTNLRELYLNEDN--------------------ISD--ISP-LANLTKMYSLNLGANHNLSDLS---- 149 (347)
T ss_dssp CCC--CGG-GTTCTTCSEEECTTSC--------------------CCC--CGG-GTTCTTCCEEECTTCTTCCCCG----
T ss_pred ccC--chH-HcCCCcCCEEECcCCc--------------------ccC--chh-hccCCceeEEECCCCCCccccc----
Confidence 222 122 3477888888887652 211 111 4567888888888865555432
Q ss_pred HHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHH
Q 038791 302 VLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLR 381 (683)
Q Consensus 302 ~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~ 381 (683)
. ...+++|+.|++.+|.-. ....+..+++|++|++++|. +++... + ..+++|+.|++++|. +++...
T Consensus 150 ~-~~~l~~L~~L~l~~~~~~------~~~~~~~l~~L~~L~l~~n~-l~~~~~--~-~~l~~L~~L~l~~n~-l~~~~~- 216 (347)
T 4fmz_A 150 P-LSNMTGLNYLTVTESKVK------DVTPIANLTDLYSLSLNYNQ-IEDISP--L-ASLTSLHYFTAYVNQ-ITDITP- 216 (347)
T ss_dssp G-GTTCTTCCEEECCSSCCC------CCGGGGGCTTCSEEECTTSC-CCCCGG--G-GGCTTCCEEECCSSC-CCCCGG-
T ss_pred c-hhhCCCCcEEEecCCCcC------CchhhccCCCCCEEEccCCc-cccccc--c-cCCCccceeecccCC-CCCCch-
Confidence 2 456788888888775431 12226677788888888765 443222 3 347778888887776 444322
Q ss_pred HHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhc
Q 038791 382 TMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKR 461 (683)
Q Consensus 382 ~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~ 461 (683)
+ ..+ ++|++|++++|.... ... ...+++|+.|+++.+.++.
T Consensus 217 -~-~~~-~~L~~L~l~~n~l~~-~~~----~~~l~~L~~L~l~~n~l~~------------------------------- 257 (347)
T 4fmz_A 217 -V-ANM-TRLNSLKIGNNKITD-LSP----LANLSQLTWLEIGTNQISD------------------------------- 257 (347)
T ss_dssp -G-GGC-TTCCEEECCSSCCCC-CGG----GTTCTTCCEEECCSSCCCC-------------------------------
T ss_pred -h-hcC-CcCCEEEccCCccCC-Ccc----hhcCCCCCEEECCCCccCC-------------------------------
Confidence 2 234 777777777765432 221 3355777777776222110
Q ss_pred cccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhh
Q 038791 462 KFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSC 541 (683)
Q Consensus 462 ~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~ 541 (683)
...+ ..+++|+.|+++ ++.+++. ..+..+++|++|+++ +|... ...+..
T Consensus 258 ---------------~~~~--~~l~~L~~L~l~---~n~l~~~--~~~~~l~~L~~L~L~---~n~l~------~~~~~~ 306 (347)
T 4fmz_A 258 ---------------INAV--KDLTKLKMLNVG---SNQISDI--SVLNNLSQLNSLFLN---NNQLG------NEDMEV 306 (347)
T ss_dssp ---------------CGGG--TTCTTCCEEECC---SSCCCCC--GGGGGCTTCSEEECC---SSCCC------GGGHHH
T ss_pred ---------------ChhH--hcCCCcCEEEcc---CCccCCC--hhhcCCCCCCEEECc---CCcCC------CcChhH
Confidence 0001 236777777763 3566554 236677788888887 77311 233566
Q ss_pred hccCcccccccccccccce
Q 038791 542 LTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 542 l~~l~~L~~L~l~~~~~~g 560 (683)
+..+++|+.|+++.|.+++
T Consensus 307 l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp HHTCTTCSEEECCSSSCCC
T ss_pred hhccccCCEEEccCCcccc
Confidence 7777777777777766554
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=4.5e-19 Score=198.44 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=22.4
Q ss_pred CccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 600 DVNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 600 ~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
..|+++ ++|+. .++.+++|+.|++++|..
T Consensus 481 ~~N~l~-~l~~~-~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 481 ASNQLK-SVPDG-VFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CSSCCC-CCCTT-STTTCTTCCCEECCSCCB
T ss_pred CCCCCC-CCCHH-HHhcCCCCCEEEecCCCc
Confidence 457777 57764 578889999999999874
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.74 E-value=4.5e-18 Score=184.54 Aligned_cols=350 Identities=15% Similarity=0.087 Sum_probs=205.9
Q ss_pred cCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCH
Q 038791 113 QWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKA 192 (683)
Q Consensus 113 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~ 192 (683)
.+++|++|+++++.... ++ .+..+++|++|++++|.+.. ++ +.. +++|++|++++|. ++.
T Consensus 40 ~l~~L~~L~Ls~n~l~~-------~~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~----l~~L~~L~Ls~N~----l~~ 99 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-------MT-GIEKLTGLTKLICTSNNITT--LD--LSQ----NTNLTYLACDSNK----LTN 99 (457)
T ss_dssp HHTTCCEEECCSSCCCC-------CT-TGGGCTTCSEEECCSSCCSC--CC--CTT----CTTCSEEECCSSC----CSC
T ss_pred HcCCCCEEEccCCCccc-------Ch-hhcccCCCCEEEccCCcCCe--Ec--ccc----CCCCCEEECcCCC----Cce
Confidence 45889999998765321 22 46788999999999987642 22 333 4599999999775 322
Q ss_pred HHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHH
Q 038791 193 QEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGL 272 (683)
Q Consensus 193 ~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l 272 (683)
. + +..+++|++|+++. +.++.. . ...+++|++|+++++. ++..
T Consensus 100 ~--~--~~~l~~L~~L~L~~-------N~l~~l--~--~~~l~~L~~L~l~~N~--------------------l~~l-- 142 (457)
T 3bz5_A 100 L--D--VTPLTKLTYLNCDT-------NKLTKL--D--VSQNPLLTYLNCARNT--------------------LTEI-- 142 (457)
T ss_dssp C--C--CTTCTTCCEEECCS-------SCCSCC--C--CTTCTTCCEEECTTSC--------------------CSCC--
T ss_pred e--e--cCCCCcCCEEECCC-------CcCCee--c--CCCCCcCCEEECCCCc--------------------ccee--
Confidence 1 1 46789999999931 233321 1 3478899999998652 2221
Q ss_pred HHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHH
Q 038791 273 IQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDM 352 (683)
Q Consensus 273 ~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~ 352 (683)
. +..+++|++|++++|..++... ...+++|+.|+++++.- + + +. ++.+++|+.|+++++. +++.
T Consensus 143 ~--l~~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~l-~---~--l~-l~~l~~L~~L~l~~N~-l~~~ 206 (457)
T 3bz5_A 143 D--VSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFNKI-T---E--LD-VSQNKLLNRLNCDTNN-ITKL 206 (457)
T ss_dssp C--CTTCTTCCEEECTTCSCCCCCC------CTTCTTCCEEECCSSCC-C---C--CC-CTTCTTCCEEECCSSC-CSCC
T ss_pred c--cccCCcCCEEECCCCCcccccc------cccCCcCCEEECCCCcc-c---e--ec-cccCCCCCEEECcCCc-CCee
Confidence 1 4568899999998875554431 35688999999987532 1 1 22 6788899999999875 6653
Q ss_pred HHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhh
Q 038791 353 GLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLEL 432 (683)
Q Consensus 353 ~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~ 432 (683)
.+. .+++|+.|++++|. +++. . + ..+ ++|+.|++++|...+ .+ ...+++|+.|+++.+
T Consensus 207 ---~l~-~l~~L~~L~Ls~N~-l~~i--p-~-~~l-~~L~~L~l~~N~l~~-~~-----~~~l~~L~~L~l~~n------ 264 (457)
T 3bz5_A 207 ---DLN-QNIQLTFLDCSSNK-LTEI--D-V-TPL-TQLTYFDCSVNPLTE-LD-----VSTLSKLTTLHCIQT------ 264 (457)
T ss_dssp ---CCT-TCTTCSEEECCSSC-CSCC--C-C-TTC-TTCSEEECCSSCCSC-CC-----CTTCTTCCEEECTTC------
T ss_pred ---ccc-cCCCCCEEECcCCc-cccc--C-c-ccc-CCCCEEEeeCCcCCC-cC-----HHHCCCCCEEeccCC------
Confidence 233 38899999999987 6653 2 2 234 889999999876542 11 234678888877622
Q ss_pred HHHHhhhccccCcccC---CcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCC
Q 038791 433 TESSESKVRSFDLNEL---NDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGL 509 (683)
Q Consensus 433 ~~~~~~~~~~l~l~~~---~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L 509 (683)
.+..+++... +... ...|++|+.+.+..+ +.+..+.. ..+.+ ....+
T Consensus 265 ------~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n-----------------~~l~~l~~---~~~~L---~~L~l 314 (457)
T 3bz5_A 265 ------DLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHN-----------------TQLYLLDC---QAAGI---TELDL 314 (457)
T ss_dssp ------CCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTC-----------------TTCCEEEC---TTCCC---SCCCC
T ss_pred ------CCCEEECCCCccCCccc-ccccccCCEEECCCC-----------------cccceecc---CCCcc---eEech
Confidence 2222222221 1111 122333333333111 11111110 00111 11125
Q ss_pred CCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhccccee-ee
Q 038791 510 DDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNL-RL 588 (683)
Q Consensus 510 ~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~~l-~l 588 (683)
.++++|++|+++ +|. +.-..++.+++|+.|+++.|.+.|. | .+..+. +....+.|.+.+ .+
T Consensus 315 ~~~~~L~~L~L~---~N~---------l~~l~l~~l~~L~~L~l~~N~l~~l----~-~L~~L~-l~~n~l~g~~~~~~l 376 (457)
T 3bz5_A 315 SQNPKLVYLYLN---NTE---------LTELDVSHNTKLKSLSCVNAHIQDF----S-SVGKIP-ALNNNFEAEGQTITM 376 (457)
T ss_dssp TTCTTCCEEECT---TCC---------CSCCCCTTCTTCSEEECCSSCCCBC----T-TGGGSS-GGGTSEEEEEEEEEC
T ss_pred hhcccCCEEECC---CCc---------ccccccccCCcCcEEECCCCCCCCc----c-cccccc-ccCCcEEecceeeec
Confidence 667777777777 662 2211366777788888877777662 1 111111 111223333333 44
Q ss_pred ccccCCCCCCcCccCcccCcccc
Q 038791 589 NELDYWPAQDRDVNQRSLTLPAS 611 (683)
Q Consensus 589 ~~l~~~~~~~~~~n~~~~~~p~~ 611 (683)
+.+ ++..|+++|.||+.
T Consensus 377 ~~l------~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 377 PKE------TLTNNSLTIAVSPD 393 (457)
T ss_dssp CCB------CCBTTBEEEECCTT
T ss_pred Ccc------ccccCcEEEEcChh
Confidence 333 66889999999985
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=184.99 Aligned_cols=370 Identities=12% Similarity=0.055 Sum_probs=217.8
Q ss_pred ccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCC
Q 038791 112 PQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFK 191 (683)
Q Consensus 112 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~ 191 (683)
..+++|++|+++++.. .+..+..+..+++|++|++++|.+. .+|.. .+++|++|+|++|. ++
T Consensus 42 ~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~------~l~~L~~L~L~~N~----l~ 103 (520)
T 2z7x_B 42 LSLSKLRILIISHNRI------QYLDISVFKFNQELEYLDLSHNKLV--KISCH------PTVNLKHLDLSFNA----FD 103 (520)
T ss_dssp TTCTTCCEEECCSSCC------CEEEGGGGTTCTTCCEEECCSSCCC--EEECC------CCCCCSEEECCSSC----CS
T ss_pred cccccccEEecCCCcc------CCcChHHhhcccCCCEEecCCCcee--ecCcc------ccCCccEEeccCCc----cc
Confidence 6789999999997652 2333556788999999999999763 34432 34599999999876 32
Q ss_pred HHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCC--cEEeecCCCC--CCCCCCCCCCC---------
Q 038791 192 AQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKL--TLLHLVDTSS--LANERGDPDSD--------- 258 (683)
Q Consensus 192 ~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L--~~L~L~~c~~--l~~~~~~~~~~--------- 258 (683)
...++..+..+++|++|+++. +.++... ...+++| ++|++++|.. ....+......
T Consensus 104 ~~~~p~~~~~l~~L~~L~L~~-------n~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 104 ALPICKEFGNMSQLKFLGLST-------THLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp SCCCCGGGGGCTTCCEEEEEE-------SSCCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred cccchhhhccCCcceEEEecC-------cccchhh----ccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 211223457889999999942 3455422 2367777 9999987643 11111000000
Q ss_pred ---------------CCcc------CCCC----cC-HHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHH--hcCCCC
Q 038791 259 ---------------GFTA------EDAS----VS-REGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLK--SKCSSL 310 (683)
Q Consensus 259 ---------------g~~~------~~~~----lt-~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~--~~~~~L 310 (683)
++.. ..+. .. -.+....+..+++|+.|+++++ .+++.. +..+. ..+++|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~l~~~~--~~~~~~~~~~~~L 249 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI-ETTWNS--FIRILQLVWHTTV 249 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEE-EEEHHH--HHHHHHHHHTSSC
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccc-ccCHHH--HHHHHHHhhhCcc
Confidence 0000 0000 00 1112223566888888888874 454332 22222 135789
Q ss_pred cEEEecCccccccccccccccc-----ccCCCCcEEEeccCCC-CCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHH
Q 038791 311 KVLKLGQFHGVCLAIGWQLDGV-----SLCGGLESLSIKNCGD-LSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMA 384 (683)
Q Consensus 311 ~~L~L~~c~~l~~~~~~~~~~l-----~~~~~L~~L~L~~~~~-lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~ 384 (683)
++|+++++. ..+..+..+ +.+++|+.++++++.- +.+..+..+.. .++|+.|++++|. ++.... .
T Consensus 250 ~~L~l~~n~----l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~-l~~~~~---~ 320 (520)
T 2z7x_B 250 WYFSISNVK----LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTR-MVHMLC---P 320 (520)
T ss_dssp SEEEEEEEE----EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSC-CCCCCC---C
T ss_pred cEEEeeccc----ccCccccchhhcccccCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCc-cccccc---h
Confidence 999998753 223445555 7788999999988751 22233333333 3679999998887 443221 0
Q ss_pred HhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhcccc
Q 038791 385 ALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFC 464 (683)
Q Consensus 385 ~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~ 464 (683)
..+ ++|++|++++|...+..+ .....+++|+.|+++.+.++.- ..++ ..+..+++|+.+.
T Consensus 321 ~~l-~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~l--~~~~--------------~~~~~l~~L~~L~ 380 (520)
T 2z7x_B 321 SKI-SPFLHLDFSNNLLTDTVF---ENCGHLTELETLILQMNQLKEL--SKIA--------------EMTTQMKSLQQLD 380 (520)
T ss_dssp SSC-CCCCEEECCSSCCCTTTT---TTCCCCSSCCEEECCSSCCCBH--HHHH--------------HHHTTCTTCCEEE
T ss_pred hhC-CcccEEEeECCccChhhh---hhhccCCCCCEEEccCCccCcc--ccch--------------HHHhhCCCCCEEE
Confidence 234 889999999886543111 1224568899999985554321 1110 1234566777777
Q ss_pred ccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhcc
Q 038791 465 LPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTR 544 (683)
Q Consensus 465 l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~ 544 (683)
+..+. ++.......-..+++|+.|+++ ++.+++.....+. ++|+.|+++ +|.-. .+ +..+..
T Consensus 381 Ls~N~---l~~~l~~~~~~~l~~L~~L~Ls---~N~l~~~~~~~l~--~~L~~L~Ls---~N~l~------~i-p~~~~~ 442 (520)
T 2z7x_B 381 ISQNS---VSYDEKKGDCSWTKSLLSLNMS---SNILTDTIFRCLP--PRIKVLDLH---SNKIK------SI-PKQVVK 442 (520)
T ss_dssp CCSSC---CBCCGGGCSCCCCTTCCEEECC---SSCCCGGGGGSCC--TTCCEEECC---SSCCC------CC-CGGGGG
T ss_pred CCCCc---CCcccccchhccCccCCEEECc---CCCCCcchhhhhc--ccCCEEECC---CCccc------cc-chhhhc
Confidence 64333 2221111111236789999874 4666655554443 789999999 77311 11 345668
Q ss_pred Ccccccccccccccce
Q 038791 545 YPQLTKLRLEFGETIG 560 (683)
Q Consensus 545 l~~L~~L~l~~~~~~g 560 (683)
+++|+.|+++.|.+.+
T Consensus 443 l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 443 LEALQELNVASNQLKS 458 (520)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCcCCc
Confidence 8999999999888774
No 37
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=7.7e-17 Score=171.38 Aligned_cols=274 Identities=16% Similarity=0.166 Sum_probs=175.2
Q ss_pred hccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccc--cCCChhHHHhhcC---ccCCCccEEEeccCC
Q 038791 111 LPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYF--WTEDLPPVLRAYP---EKSANLTCLNLLTTS 185 (683)
Q Consensus 111 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~--~~~~~~~~l~~~~---~~~~~L~~L~L~~~~ 185 (683)
...+++|++|+|+++.... .....+...+..+++|++|+|++|.. .++.+|..+..+. ..+++|++|+|++|.
T Consensus 28 l~~~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGT--EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHCSCCCEEECTTSEECH--HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HhcCCCccEEECCCCCCCH--HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 4667889999998765321 00111334466789999999998743 1233344332111 245699999999775
Q ss_pred CCCCCCH---HHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHh---cC---------CCCcEEeecCCCCCCC
Q 038791 186 FTEGFKA---QEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIAT---NC---------PKLTLLHLVDTSSLAN 250 (683)
Q Consensus 186 ~c~~i~~---~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~---~~---------~~L~~L~L~~c~~l~~ 250 (683)
+++ ..+...+..+++|++|+++ .+.+++.+...++. .+ ++|++|++++|
T Consensus 106 ----l~~~~~~~l~~~l~~~~~L~~L~L~-------~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n----- 169 (386)
T 2ca6_A 106 ----FGPTAQEPLIDFLSKHTPLEHLYLH-------NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN----- 169 (386)
T ss_dssp ----CCTTTHHHHHHHHHHCTTCCEEECC-------SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-----
T ss_pred ----CCHHHHHHHHHHHHhCCCCCEEECc-------CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-----
Confidence 433 2455566788999999994 23566655554442 23 88999999864
Q ss_pred CCCCCCCCCCccCCCCcCHHHHH---HHHhCCCCCcEEEeccccCcCCChhHHHH----HHhcCCCCcEEEecCcccccc
Q 038791 251 ERGDPDSDGFTAEDASVSREGLI---QLFSGLPLLEELVLDVCKNVRDSGPVLEV----LKSKCSSLKVLKLGQFHGVCL 323 (683)
Q Consensus 251 ~~~~~~~~g~~~~~~~lt~~~l~---~l~~~~~~L~~L~L~~c~~l~~~~~~l~~----l~~~~~~L~~L~L~~c~~l~~ 323 (683)
.+++.+++ ..+..+++|++|++++| .+++.+ +.. .+..+++|+.|+|+++.- ++
T Consensus 170 ---------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g--~~~l~~~~l~~~~~L~~L~Ls~n~l-~~ 230 (386)
T 2ca6_A 170 ---------------RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEG--IEHLLLEGLAYCQELKVLDLQDNTF-TH 230 (386)
T ss_dssp ---------------CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHH--HHHHHHTTGGGCTTCCEEECCSSCC-HH
T ss_pred ---------------CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhH--HHHHHHHHhhcCCCccEEECcCCCC-Cc
Confidence 45544555 34557889999999885 666444 222 335788899999887542 21
Q ss_pred c-ccccccccccCCCCcEEEeccCCCCCHHHHHHHHhc-----CCCCcEEEecCCCCCCHHHHHHHH----HhcccCccE
Q 038791 324 A-IGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRG-----CRRLIKFELEGCKNVTVDGLRTMA----ALRRETLVE 393 (683)
Q Consensus 324 ~-~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~-----~~~L~~L~L~~c~~it~~~l~~l~----~~~~~~L~~ 393 (683)
. ....+..+..+++|++|+|++|. +++.+...++.. +++|+.|+|++|. +++.++..+. ..+ ++|+.
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l-~~L~~ 307 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKM-PDLLF 307 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHC-TTCCE
T ss_pred HHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcC-CCceE
Confidence 1 12234556678889999998876 888776665543 7889999998888 8886554443 335 88888
Q ss_pred EEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 394 MKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 394 L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
|++++|+.......+..+....++++.+.++
T Consensus 308 L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 308 LELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp EECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred EEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 8888887654443244444444555555554
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=5.7e-18 Score=185.51 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=48.0
Q ss_pred cCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 484 TWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 484 ~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
.+++|+.|+++ ++.++++....+.++++|++|+++ +|.-. .+.+..+..+++|+.|+++.|.+.+
T Consensus 270 ~l~~L~~L~L~---~n~l~~~~~~~~~~l~~L~~L~L~---~N~l~------~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 270 ELLRLQEIQLV---GGQLAVVEPYAFRGLNYLRVLNVS---GNQLT------TLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TCTTCCEEECC---SSCCSEECTTTBTTCTTCCEEECC---SSCCS------CCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ccccCCEEECC---CCccceECHHHhcCcccCCEEECC---CCcCc------eeCHhHcCCCcccCEEEccCCCccC
Confidence 36788888873 477777777778888999999998 77321 2334556778889999998887664
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=8.8e-17 Score=179.82 Aligned_cols=370 Identities=12% Similarity=-0.000 Sum_probs=202.4
Q ss_pred ccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCC
Q 038791 112 PQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFK 191 (683)
Q Consensus 112 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~ 191 (683)
..+++|++|+++++.. .+..+..+..+++|++|++++|.+. .+|.. .+++|++|+|++|. ++
T Consensus 73 ~~l~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~------~l~~L~~L~Ls~N~----l~ 134 (562)
T 3a79_B 73 SFLSELRVLRLSHNRI------RSLDFHVFLFNQDLEYLDVSHNRLQ--NISCC------PMASLRHLDLSFND----FD 134 (562)
T ss_dssp TTCTTCCEEECCSCCC------CEECTTTTTTCTTCCEEECTTSCCC--EECSC------CCTTCSEEECCSSC----CS
T ss_pred ccCCCccEEECCCCCC------CcCCHHHhCCCCCCCEEECCCCcCC--ccCcc------ccccCCEEECCCCC----cc
Confidence 5678899999986652 2222345677889999999988763 34332 34599999999775 32
Q ss_pred HHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCC--cEEeecCCCC--CCCCCCCCCCC---------
Q 038791 192 AQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKL--TLLHLVDTSS--LANERGDPDSD--------- 258 (683)
Q Consensus 192 ~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L--~~L~L~~c~~--l~~~~~~~~~~--------- 258 (683)
.-.++..+..+++|++|+++. +.++...+ ..+++| ++|+++++.. -...+......
T Consensus 135 ~l~~p~~~~~l~~L~~L~L~~-------n~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 135 VLPVCKEFGNLTKLTFLGLSA-------AKFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp BCCCCGGGGGCTTCCEEEEEC-------SBCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred ccCchHhhcccCcccEEecCC-------CccccCch----hhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 211223356789999999942 34444222 244555 9999887643 00000000000
Q ss_pred ------C---------Cc------cCCCCcC---HHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHH--hcCCCCcE
Q 038791 259 ------G---------FT------AEDASVS---REGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLK--SKCSSLKV 312 (683)
Q Consensus 259 ------g---------~~------~~~~~lt---~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~--~~~~~L~~ 312 (683)
+ +. ...+... -.+....+..+++|+.|++..+ .+++.. +..+. ...++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~-~l~~~~--~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI-ETTWKC--SVKLFQFFWPRPVEY 280 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE-EECHHH--HHHHHHHHTTSSEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC-cCcHHH--HHHHHHhhhcccccE
Confidence 0 00 0000000 1122233456777888877763 343322 22221 23458899
Q ss_pred EEecCccccccccccccccc-----ccCCCCcEEEeccCC-CCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHh
Q 038791 313 LKLGQFHGVCLAIGWQLDGV-----SLCGGLESLSIKNCG-DLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAAL 386 (683)
Q Consensus 313 L~L~~c~~l~~~~~~~~~~l-----~~~~~L~~L~L~~~~-~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~ 386 (683)
|+++++.- .+..+..+ +.++.|+.+++..+. .+.+..+..+.. .++|++|++++|. ++.... ...
T Consensus 281 L~l~~n~l----~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n~-~~~~~~---~~~ 351 (562)
T 3a79_B 281 LNIYNLTI----TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDTP-FIHMVC---PPS 351 (562)
T ss_dssp EEEEEEEE----CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCCCSEEEEESSC-CCCCCC---CSS
T ss_pred EEEeccEe----eccccchhhhcccccchheehhhcccceeecChhhhhhhhc-cCcceEEEccCCC-cccccC---ccC
Confidence 99887532 22333333 445555555555443 234445555544 4679999998887 432211 023
Q ss_pred cccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhcccccc
Q 038791 387 RRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLP 466 (683)
Q Consensus 387 ~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~ 466 (683)
+ ++|++|++++|...+.. +.....+++|+.|+++.+.++.- ..++ ..+..+++|+.+.+.
T Consensus 352 l-~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~N~l~~~--~~~~--------------~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 352 P-SSFTFLNFTQNVFTDSV---FQGCSTLKRLQTLILQRNGLKNF--FKVA--------------LMTKNMSSLETLDVS 411 (562)
T ss_dssp C-CCCCEEECCSSCCCTTT---TTTCCSCSSCCEEECCSSCCCBT--THHH--------------HTTTTCTTCCEEECT
T ss_pred C-CCceEEECCCCccccch---hhhhcccCCCCEEECCCCCcCCc--ccch--------------hhhcCCCCCCEEECC
Confidence 4 88999999987654311 11224568899999885444320 0000 113345667766664
Q ss_pred CCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCc
Q 038791 467 EGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYP 546 (683)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~ 546 (683)
.+. ++..........+++|+.|+++ ++.+++.....+. ++|++|+++ +|+-. .+ +..+..++
T Consensus 412 ~N~---l~~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~~~l~--~~L~~L~L~---~N~l~------~i-p~~~~~l~ 473 (562)
T 3a79_B 412 LNS---LNSHAYDRTCAWAESILVLNLS---SNMLTGSVFRCLP--PKVKVLDLH---NNRIM------SI-PKDVTHLQ 473 (562)
T ss_dssp TSC---CBSCCSSCCCCCCTTCCEEECC---SSCCCGGGGSSCC--TTCSEEECC---SSCCC------CC-CTTTTSSC
T ss_pred CCc---CCCccChhhhcCcccCCEEECC---CCCCCcchhhhhc--CcCCEEECC---CCcCc------cc-ChhhcCCC
Confidence 333 2221111111236788888874 4666655444333 688888888 77311 11 33455788
Q ss_pred ccccccccccccce
Q 038791 547 QLTKLRLEFGETIG 560 (683)
Q Consensus 547 ~L~~L~l~~~~~~g 560 (683)
+|+.|+++.|.+++
T Consensus 474 ~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 474 ALQELNVASNQLKS 487 (562)
T ss_dssp CCSEEECCSSCCCC
T ss_pred CCCEEECCCCCCCC
Confidence 88888888888774
No 40
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=5.4e-15 Score=157.08 Aligned_cols=262 Identities=15% Similarity=0.160 Sum_probs=178.4
Q ss_pred HHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCC---HHHHH---HHHhhCCCCceEEe
Q 038791 137 FIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFK---AQEIR---EITAACPSLNKLLV 210 (683)
Q Consensus 137 l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~---~~~l~---~l~~~~~~L~~L~L 210 (683)
+...+..+++|++|+|++|.+. ...+..+...-..+++|++|+|++|. ...++ ..++. ..+..+++|++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIG-TEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEEC-HHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHhcCCCccEEECCCCCCC-HHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4456778999999999999873 44444444333456799999999653 12232 22333 33467899999999
Q ss_pred ceecCCCCccccCHHH---HHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHH---HhCC-----
Q 038791 211 ACTFDPRYIGFVNDET---LSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQL---FSGL----- 279 (683)
Q Consensus 211 ~c~~~~~~~~~l~~~~---l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l---~~~~----- 279 (683)
+ .+.+++.+ +......+++|++|++++| .+++.+...+ +..+
T Consensus 102 s-------~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--------------------~l~~~~~~~l~~~l~~l~~~~~ 154 (386)
T 2ca6_A 102 S-------DNAFGPTAQEPLIDFLSKHTPLEHLYLHNN--------------------GLGPQAGAKIARALQELAVNKK 154 (386)
T ss_dssp C-------SCCCCTTTHHHHHHHHHHCTTCCEEECCSS--------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-------CCcCCHHHHHHHHHHHHhCCCCCEEECcCC--------------------CCCHHHHHHHHHHHHHHhhhhh
Confidence 4 23555532 3333358999999999975 4554443333 3334
Q ss_pred ----CCCcEEEeccccCcCCCh-hHHHHHHhcCCCCcEEEecCccccccc-cccccc-ccccCCCCcEEEeccCCCCCHH
Q 038791 280 ----PLLEELVLDVCKNVRDSG-PVLEVLKSKCSSLKVLKLGQFHGVCLA-IGWQLD-GVSLCGGLESLSIKNCGDLSDM 352 (683)
Q Consensus 280 ----~~L~~L~L~~c~~l~~~~-~~l~~l~~~~~~L~~L~L~~c~~l~~~-~~~~~~-~l~~~~~L~~L~L~~~~~lt~~ 352 (683)
++|++|++++| .+++.+ ..+...+..+++|++|++++|.- .+. ...... .+..+++|++|+|++|. +++.
T Consensus 155 ~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~ 231 (386)
T 2ca6_A 155 AKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHL 231 (386)
T ss_dssp HHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCC-CHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHH
T ss_pred cccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCCC-CHhHHHHHHHHHhhcCCCccEEECcCCC-CCcH
Confidence 89999999985 676444 11224456899999999998632 211 001122 67789999999999986 8876
Q ss_pred HHHHHH---hcCCCCcEEEecCCCCCCHHHHHHHHHh-----cccCccEEEeecccccCh-hhHHHHHH-hcCCCccEEE
Q 038791 353 GLVAIG---RGCRRLIKFELEGCKNVTVDGLRTMAAL-----RRETLVEMKISCCKQLGA-VASCKALD-LVRDRIEKLH 422 (683)
Q Consensus 353 ~l~~l~---~~~~~L~~L~L~~c~~it~~~l~~l~~~-----~~~~L~~L~l~~c~~l~~-~~~l~~l~-~~~~~L~~L~ 422 (683)
+...++ ..+++|++|+|++|. +++.+...+... + ++|+.|++++|..... ...++... ..+++|+.|+
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~-~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSS-CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccC-CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 655544 458999999999999 999987776654 4 8999999998865421 11132223 4579999999
Q ss_pred EeeecCChhh
Q 038791 423 IDCVWDGLEL 432 (683)
Q Consensus 423 L~c~~~~~~~ 432 (683)
++++.++...
T Consensus 310 l~~N~l~~~~ 319 (386)
T 2ca6_A 310 LNGNRFSEED 319 (386)
T ss_dssp CTTSBSCTTS
T ss_pred ccCCcCCcch
Confidence 9977776544
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=1.1e-17 Score=183.15 Aligned_cols=279 Identities=18% Similarity=0.137 Sum_probs=177.5
Q ss_pred CCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCC
Q 038791 174 ANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERG 253 (683)
Q Consensus 174 ~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~ 253 (683)
++|+.|+|++|. ++... ...+..+++|++|+++. +.++......+ .++++|++|+++++. ++..
T Consensus 32 ~~l~~L~L~~n~----l~~~~-~~~~~~l~~L~~L~L~~-------n~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-- 95 (477)
T 2id5_A 32 TETRLLDLGKNR----IKTLN-QDEFASFPHLEELELNE-------NIVSAVEPGAF-NNLFNLRTLGLRSNR-LKLI-- 95 (477)
T ss_dssp TTCSEEECCSSC----CCEEC-TTTTTTCTTCCEEECTT-------SCCCEECTTTT-TTCTTCCEEECCSSC-CCSC--
T ss_pred CCCcEEECCCCc----cceEC-HhHccCCCCCCEEECCC-------CccCEeChhhh-hCCccCCEEECCCCc-CCcc--
Confidence 589999999875 32210 12346789999999931 23333222223 478999999998652 1111
Q ss_pred CCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccc
Q 038791 254 DPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVS 333 (683)
Q Consensus 254 ~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~ 333 (683)
. ...+..+++|++|+++++ .++.. ....+..+++|++|+++++. ........+.
T Consensus 96 --------------~----~~~~~~l~~L~~L~Ls~n-~i~~~---~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~ 149 (477)
T 2id5_A 96 --------------P----LGVFTGLSNLTKLDISEN-KIVIL---LDYMFQDLYNLKSLEVGDND----LVYISHRAFS 149 (477)
T ss_dssp --------------C----TTSSTTCTTCCEEECTTS-CCCEE---CTTTTTTCTTCCEEEECCTT----CCEECTTSST
T ss_pred --------------C----cccccCCCCCCEEECCCC-ccccC---ChhHccccccCCEEECCCCc----cceeChhhcc
Confidence 1 012356889999999884 55432 12234678999999998743 2233445677
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHh
Q 038791 334 LCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDL 413 (683)
Q Consensus 334 ~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~ 413 (683)
.+++|++|++++|. ++......+.. +++|+.|++++|. ++......+. .+ ++|++|++++|..++.... ...
T Consensus 150 ~l~~L~~L~l~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~-i~~~~~~~~~-~l-~~L~~L~l~~~~~~~~~~~---~~~ 221 (477)
T 2id5_A 150 GLNSLEQLTLEKCN-LTSIPTEALSH-LHGLIVLRLRHLN-INAIRDYSFK-RL-YRLKVLEISHWPYLDTMTP---NCL 221 (477)
T ss_dssp TCTTCCEEEEESCC-CSSCCHHHHTT-CTTCCEEEEESCC-CCEECTTCSC-SC-TTCCEEEEECCTTCCEECT---TTT
T ss_pred CCCCCCEEECCCCc-CcccChhHhcc-cCCCcEEeCCCCc-CcEeChhhcc-cC-cccceeeCCCCccccccCc---ccc
Confidence 88999999999875 66544444444 8899999998887 5543222222 23 7888999988876643221 112
Q ss_pred cCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeee
Q 038791 414 VRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSI 493 (683)
Q Consensus 414 ~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L 493 (683)
...+|+.|+++.+.++. .....+ ..+++|+.|++
T Consensus 222 ~~~~L~~L~l~~n~l~~---------------------------------------------~~~~~~-~~l~~L~~L~L 255 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTA---------------------------------------------VPYLAV-RHLVYLRFLNL 255 (477)
T ss_dssp TTCCCSEEEEESSCCCS---------------------------------------------CCHHHH-TTCTTCCEEEC
T ss_pred cCccccEEECcCCcccc---------------------------------------------cCHHHh-cCccccCeeEC
Confidence 23578888887322210 000001 23678899887
Q ss_pred eeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 494 WIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 494 ~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+ ++.++.+....+.++++|++|+++ +|... ...+..+..+++|+.|+++.|.+.+
T Consensus 256 s---~n~l~~~~~~~~~~l~~L~~L~L~---~n~l~------~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 256 S---YNPISTIEGSMLHELLRLQEIQLV---GGQLA------VVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp C---SSCCCEECTTSCTTCTTCCEEECC---SSCCS------EECTTTBTTCTTCCEEECCSSCCSC
T ss_pred C---CCcCCccChhhccccccCCEEECC---CCccc------eECHHHhcCcccCCEEECCCCcCce
Confidence 4 477777777778888999999998 77311 3335677888899999998887775
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=1.8e-16 Score=171.82 Aligned_cols=315 Identities=14% Similarity=0.049 Sum_probs=196.3
Q ss_pred ccCCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCC
Q 038791 112 PQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFK 191 (683)
Q Consensus 112 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~ 191 (683)
..+++|++|+++++.... ++ +..+++|++|++++|.+.. ++ +.. +++|++|++++|. ++
T Consensus 61 ~~l~~L~~L~Ls~n~l~~-------~~--~~~l~~L~~L~Ls~N~l~~--~~--~~~----l~~L~~L~L~~N~----l~ 119 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITT-------LD--LSQNTNLTYLACDSNKLTN--LD--VTP----LTKLTYLNCDTNK----LT 119 (457)
T ss_dssp GGCTTCSEEECCSSCCSC-------CC--CTTCTTCSEEECCSSCCSC--CC--CTT----CTTCCEEECCSSC----CS
T ss_pred cccCCCCEEEccCCcCCe-------Ec--cccCCCCCEEECcCCCCce--ee--cCC----CCcCCEEECCCCc----CC
Confidence 578999999999766331 21 6788999999999998743 22 333 4599999999875 32
Q ss_pred HHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHH
Q 038791 192 AQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREG 271 (683)
Q Consensus 192 ~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~ 271 (683)
. ++ +..+++|++|+++. +.++.. . ...+++|++|++++|..++...
T Consensus 120 ~--l~--~~~l~~L~~L~l~~-------N~l~~l---~-l~~l~~L~~L~l~~n~~~~~~~------------------- 165 (457)
T 3bz5_A 120 K--LD--VSQNPLLTYLNCAR-------NTLTEI---D-VSHNTQLTELDCHLNKKITKLD------------------- 165 (457)
T ss_dssp C--CC--CTTCTTCCEEECTT-------SCCSCC---C-CTTCTTCCEEECTTCSCCCCCC-------------------
T ss_pred e--ec--CCCCCcCCEEECCC-------Ccccee---c-cccCCcCCEEECCCCCcccccc-------------------
Confidence 2 11 46889999999931 233331 1 3478999999999874432210
Q ss_pred HHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCH
Q 038791 272 LIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSD 351 (683)
Q Consensus 272 l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~ 351 (683)
+..+++|++|+++++ .++.. + ...+++|+.|+++++.- + + + .++.+++|++|+++++. +++
T Consensus 166 ----~~~l~~L~~L~ls~n-~l~~l----~--l~~l~~L~~L~l~~N~l-~---~--~-~l~~l~~L~~L~Ls~N~-l~~ 226 (457)
T 3bz5_A 166 ----VTPQTQLTTLDCSFN-KITEL----D--VSQNKLLNRLNCDTNNI-T---K--L-DLNQNIQLTFLDCSSNK-LTE 226 (457)
T ss_dssp ----CTTCTTCCEEECCSS-CCCCC----C--CTTCTTCCEEECCSSCC-S---C--C-CCTTCTTCSEEECCSSC-CSC
T ss_pred ----cccCCcCCEEECCCC-cccee----c--cccCCCCCEEECcCCcC-C---e--e-ccccCCCCCEEECcCCc-ccc
Confidence 346789999999884 66653 2 46789999999987532 1 1 1 36788999999999975 666
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccE----------EEeecccccChhhHHHHHHhcCCCccEE
Q 038791 352 MGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVE----------MKISCCKQLGAVASCKALDLVRDRIEKL 421 (683)
Q Consensus 352 ~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~----------L~l~~c~~l~~~~~l~~l~~~~~~L~~L 421 (683)
. . + ..+++|+.|++++|. +++..+. .+ ++|+. |++++|..++..+ ...|++|+.|
T Consensus 227 i--p-~-~~l~~L~~L~l~~N~-l~~~~~~----~l-~~L~~L~l~~n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L 291 (457)
T 3bz5_A 227 I--D-V-TPLTQLTYFDCSVNP-LTELDVS----TL-SKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIKEL 291 (457)
T ss_dssp C--C-C-TTCTTCSEEECCSSC-CSCCCCT----TC-TTCCEEECTTCCCSCCCCTTCTTCCEEE-----CTTCTTCCCC
T ss_pred c--C-c-cccCCCCEEEeeCCc-CCCcCHH----HC-CCCCEEeccCCCCCEEECCCCccCCccc-----ccccccCCEE
Confidence 2 2 3 348999999999987 6654321 23 55554 4555554443322 1346778888
Q ss_pred EEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccC
Q 038791 422 HIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLL 501 (683)
Q Consensus 422 ~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l 501 (683)
+++.+... +.+. ...++++.+.+ ..+++|+.|++ .++.+
T Consensus 292 ~Ls~n~~l-------------------~~l~--~~~~~L~~L~l-----------------~~~~~L~~L~L---~~N~l 330 (457)
T 3bz5_A 292 DVTHNTQL-------------------YLLD--CQAAGITELDL-----------------SQNPKLVYLYL---NNTEL 330 (457)
T ss_dssp CCTTCTTC-------------------CEEE--CTTCCCSCCCC-----------------TTCTTCCEEEC---TTCCC
T ss_pred ECCCCccc-------------------ceec--cCCCcceEech-----------------hhcccCCEEEC---CCCcc
Confidence 77722210 0000 01112222221 23678888887 34777
Q ss_pred CCccccCCCCCCCcceeeecccCCCCCCCCCCCccch-----hhhhccCcccccccccccccceee
Q 038791 502 TPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFG-----LSCLTRYPQLTKLRLEFGETIGYA 562 (683)
Q Consensus 502 ~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~g~~ 562 (683)
+++ .+.+|++|+.|+++ +++-..-+....+. ......+..|..++++.|.++|.+
T Consensus 331 ~~l---~l~~l~~L~~L~l~---~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 331 TEL---DVSHNTKLKSLSCV---NAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp SCC---CCTTCTTCSEEECC---SSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEEC
T ss_pred ccc---ccccCCcCcEEECC---CCCCCCccccccccccCCcEEecceeeecCccccccCcEEEEc
Confidence 775 37888999999998 76322111111110 111123456677777888888754
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=4.5e-17 Score=184.92 Aligned_cols=134 Identities=18% Similarity=0.095 Sum_probs=80.8
Q ss_pred CccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHH
Q 038791 116 GLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEI 195 (683)
Q Consensus 116 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l 195 (683)
++++|+|+++... .-.+..+.++++|++|+|++|.+. .-.+.++..+ ++|++|+|++|.. ..+..
T Consensus 53 ~~~~LdLs~N~i~------~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L----~~L~~L~Ls~N~l-~~l~~--- 117 (635)
T 4g8a_A 53 STKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSL----SHLSTLILTGNPI-QSLAL--- 117 (635)
T ss_dssp TCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTC----TTCCEEECTTCCC-CEECG---
T ss_pred CCCEEEeeCCCCC------CCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCC----CCCCEEEccCCcC-CCCCH---
Confidence 6899999866522 112235678899999999988652 1112223344 4999999997751 22222
Q ss_pred HHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHH
Q 038791 196 REITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQL 275 (683)
Q Consensus 196 ~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l 275 (683)
..+..+++|++|+++. +.++.... ....++++|++|+++++. ++...++..
T Consensus 118 -~~f~~L~~L~~L~Ls~-------N~l~~l~~-~~~~~L~~L~~L~Ls~N~--------------------l~~~~~~~~ 168 (635)
T 4g8a_A 118 -GAFSGLSSLQKLVAVE-------TNLASLEN-FPIGHLKTLKELNVAHNL--------------------IQSFKLPEY 168 (635)
T ss_dssp -GGGTTCTTCCEEECTT-------SCCCCSTT-CCCTTCTTCCEEECCSSC--------------------CCCCCCCGG
T ss_pred -HHhcCCCCCCEEECCC-------CcCCCCCh-hhhhcCcccCeeccccCc--------------------cccCCCchh
Confidence 2346788999999931 12221111 112478899999998642 222122233
Q ss_pred HhCCCCCcEEEeccccCcC
Q 038791 276 FSGLPLLEELVLDVCKNVR 294 (683)
Q Consensus 276 ~~~~~~L~~L~L~~c~~l~ 294 (683)
+..+++|++|+++++ .++
T Consensus 169 ~~~l~~L~~L~L~~N-~l~ 186 (635)
T 4g8a_A 169 FSNLTNLEHLDLSSN-KIQ 186 (635)
T ss_dssp GGGCTTCCEEECCSS-CCC
T ss_pred hccchhhhhhcccCc-ccc
Confidence 566888999999874 454
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=1.2e-16 Score=170.29 Aligned_cols=310 Identities=15% Similarity=0.096 Sum_probs=186.1
Q ss_pred CCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHH
Q 038791 114 WPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQ 193 (683)
Q Consensus 114 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~ 193 (683)
+++++.|++.++... ..-...+..+++|++|+++++.+. +..+..+..+ ++|++|+|++|.. .++..
T Consensus 44 l~~l~~l~l~~~~l~------~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l----~~L~~L~L~~n~l-~~~~~- 110 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR------KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYA----HTIQKLYMGFNAI-RYLPP- 110 (390)
T ss_dssp GCCCSEEEEESCEES------EECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTC----TTCCEEECCSSCC-CCCCT-
T ss_pred cCCceEEEecCCchh------hCChhHhcccccCcEEECCCCccc-ccChhhccCC----CCcCEEECCCCCC-CcCCH-
Confidence 478999999865522 122345678899999999988763 2222234444 4999999997752 22221
Q ss_pred HHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHH
Q 038791 194 EIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLI 273 (683)
Q Consensus 194 ~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~ 273 (683)
..+..+++|++|+++. +.++. ....+...+++|++|+++++.- +. +. +
T Consensus 111 ---~~~~~l~~L~~L~L~~-------n~l~~-l~~~~~~~l~~L~~L~L~~n~l-~~----------------~~----~ 158 (390)
T 3o6n_A 111 ---HVFQNVPLLTVLVLER-------NDLSS-LPRGIFHNTPKLTTLSMSNNNL-ER----------------IE----D 158 (390)
T ss_dssp ---TTTTTCTTCCEEECCS-------SCCCC-CCTTTTTTCTTCCEEECCSSCC-CB----------------CC----T
T ss_pred ---HHhcCCCCCCEEECCC-------CccCc-CCHHHhcCCCCCcEEECCCCcc-Cc----------------cC----h
Confidence 2236788999999931 23331 1112234788999999987521 11 11 1
Q ss_pred HHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHH
Q 038791 274 QLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMG 353 (683)
Q Consensus 274 ~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~ 353 (683)
..+..+++|++|++++ +.++..+ ...+++|+.|+++++. +..+...++|++|+++++. ++...
T Consensus 159 ~~~~~l~~L~~L~l~~-n~l~~~~------~~~l~~L~~L~l~~n~---------l~~~~~~~~L~~L~l~~n~-l~~~~ 221 (390)
T 3o6n_A 159 DTFQATTSLQNLQLSS-NRLTHVD------LSLIPSLFHANVSYNL---------LSTLAIPIAVEELDASHNS-INVVR 221 (390)
T ss_dssp TTTSSCTTCCEEECCS-SCCSBCC------GGGCTTCSEEECCSSC---------CSEEECCSSCSEEECCSSC-CCEEE
T ss_pred hhccCCCCCCEEECCC-CcCCccc------cccccccceeeccccc---------ccccCCCCcceEEECCCCe-eeecc
Confidence 1245678899999988 4565432 2457889999888632 2334455788888888865 44321
Q ss_pred HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhH
Q 038791 354 LVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELT 433 (683)
Q Consensus 354 l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~ 433 (683)
....++|+.|++++|. +++. ..+ ..+ ++|++|++++|...+.. +.....+++|+.|+++++.++.
T Consensus 222 ----~~~~~~L~~L~l~~n~-l~~~--~~l-~~l-~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~--- 286 (390)
T 3o6n_A 222 ----GPVNVELTILKLQHNN-LTDT--AWL-LNY-PGLVEVDLSYNELEKIM---YHPFVKMQRLERLYISNNRLVA--- 286 (390)
T ss_dssp ----CCCCSSCCEEECCSSC-CCCC--GGG-GGC-TTCSEEECCSSCCCEEE---SGGGTTCSSCCEEECCSSCCCE---
T ss_pred ----ccccccccEEECCCCC-Cccc--HHH-cCC-CCccEEECCCCcCCCcC---hhHccccccCCEEECCCCcCcc---
Confidence 1225678888888887 5543 222 234 78888888877543211 1122345778888877322100
Q ss_pred HHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCC
Q 038791 434 ESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCP 513 (683)
Q Consensus 434 ~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~ 513 (683)
+ ......+++|+.|+++ ++.++.++. .+..++
T Consensus 287 -----------------------------~---------------~~~~~~l~~L~~L~L~---~n~l~~~~~-~~~~l~ 318 (390)
T 3o6n_A 287 -----------------------------L---------------NLYGQPIPTLKVLDLS---HNHLLHVER-NQPQFD 318 (390)
T ss_dssp -----------------------------E---------------ECSSSCCTTCCEEECC---SSCCCCCGG-GHHHHT
T ss_pred -----------------------------c---------------CcccCCCCCCCEEECC---CCcceecCc-cccccC
Confidence 0 0001236788888864 356654432 356678
Q ss_pred CcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 514 VLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 514 ~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+|++|+++ +|. +....+..+++|+.|+++.|.+.+
T Consensus 319 ~L~~L~L~---~N~---------i~~~~~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 319 RLENLYLD---HNS---------IVTLKLSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TCSEEECC---SSC---------CCCCCCCTTCCCSEEECCSSCEEH
T ss_pred cCCEEECC---CCc---------cceeCchhhccCCEEEcCCCCccc
Confidence 88888888 773 221235667888888888877665
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=1e-16 Score=170.78 Aligned_cols=307 Identities=14% Similarity=0.107 Sum_probs=191.4
Q ss_pred CCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCC
Q 038791 174 ANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERG 253 (683)
Q Consensus 174 ~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~ 253 (683)
++|+.|+++++. -..+.. .++..+++|++|+++. +.+++.....+ ..+++|++|+++++. ++..
T Consensus 45 ~~l~~l~l~~~~-l~~l~~----~~~~~l~~L~~L~L~~-------n~i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~-- 108 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKLPA----ALLDSFRQVELLNLND-------LQIEEIDTYAF-AYAHTIQKLYMGFNA-IRYL-- 108 (390)
T ss_dssp CCCSEEEEESCE-ESEECT----HHHHHCCCCSEEECTT-------SCCCEECTTTT-TTCTTCCEEECCSSC-CCCC--
T ss_pred CCceEEEecCCc-hhhCCh----hHhcccccCcEEECCC-------CcccccChhhc-cCCCCcCEEECCCCC-CCcC--
Confidence 499999999764 223333 3346789999999931 13332211222 478899999998753 1111
Q ss_pred CCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccc
Q 038791 254 DPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVS 333 (683)
Q Consensus 254 ~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~ 333 (683)
. +..+..+++|++|+++++ .++... ..+...+++|++|+++++.- ....+..++
T Consensus 109 --------------~----~~~~~~l~~L~~L~L~~n-~l~~l~---~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~ 162 (390)
T 3o6n_A 109 --------------P----PHVFQNVPLLTVLVLERN-DLSSLP---RGIFHNTPKLTTLSMSNNNL----ERIEDDTFQ 162 (390)
T ss_dssp --------------C----TTTTTTCTTCCEEECCSS-CCCCCC---TTTTTTCTTCCEEECCSSCC----CBCCTTTTS
T ss_pred --------------C----HHHhcCCCCCCEEECCCC-ccCcCC---HHHhcCCCCCcEEECCCCcc----CccChhhcc
Confidence 0 112456888999999884 565432 12336688999999987532 223345577
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHh
Q 038791 334 LCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDL 413 (683)
Q Consensus 334 ~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~ 413 (683)
.+++|++|+++++. ++... + ..+++|+.|++++|. ++... .. ++|++|++++|... ..+. .
T Consensus 163 ~l~~L~~L~l~~n~-l~~~~---~-~~l~~L~~L~l~~n~-l~~~~------~~-~~L~~L~l~~n~l~-~~~~-----~ 223 (390)
T 3o6n_A 163 ATTSLQNLQLSSNR-LTHVD---L-SLIPSLFHANVSYNL-LSTLA------IP-IAVEELDASHNSIN-VVRG-----P 223 (390)
T ss_dssp SCTTCCEEECCSSC-CSBCC---G-GGCTTCSEEECCSSC-CSEEE------CC-SSCSEEECCSSCCC-EEEC-----C
T ss_pred CCCCCCEEECCCCc-CCccc---c-ccccccceeeccccc-ccccC------CC-CcceEEECCCCeee-eccc-----c
Confidence 88899999998875 55532 2 337888999988886 44321 12 67888888877543 2211 1
Q ss_pred cCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeee
Q 038791 414 VRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSI 493 (683)
Q Consensus 414 ~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L 493 (683)
..++|+.|+++.+.++. . ..+ ..+++|+.|++
T Consensus 224 ~~~~L~~L~l~~n~l~~---------------------------------------------~--~~l-~~l~~L~~L~L 255 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTD---------------------------------------------T--AWL-LNYPGLVEVDL 255 (390)
T ss_dssp CCSSCCEEECCSSCCCC---------------------------------------------C--GGG-GGCTTCSEEEC
T ss_pred ccccccEEECCCCCCcc---------------------------------------------c--HHH-cCCCCccEEEC
Confidence 23678888887322210 0 111 23789999997
Q ss_pred eeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCch
Q 038791 494 WIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLT 573 (683)
Q Consensus 494 ~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~ 573 (683)
+ ++.+++.....+.++++|++|+++ +|+.. .+ +..+..+++|+.|+++.|.+.+. |..+..++
T Consensus 256 s---~n~l~~~~~~~~~~l~~L~~L~L~---~n~l~------~~-~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~l~ 318 (390)
T 3o6n_A 256 S---YNELEKIMYHPFVKMQRLERLYIS---NNRLV------AL-NLYGQPIPTLKVLDLSHNHLLHV----ERNQPQFD 318 (390)
T ss_dssp C---SSCCCEEESGGGTTCSSCCEEECC---SSCCC------EE-ECSSSCCTTCCEEECCSSCCCCC----GGGHHHHT
T ss_pred C---CCcCCCcChhHccccccCCEEECC---CCcCc------cc-CcccCCCCCCCEEECCCCcceec----CccccccC
Confidence 4 477877777778899999999999 87321 11 23346789999999999887642 33333333
Q ss_pred hhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 574 LWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 574 ~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
.|+.+++ ..|.++. +| ++.+++|++|++++|..
T Consensus 319 ~L~~L~L-------------------~~N~i~~-~~----~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 319 RLENLYL-------------------DHNSIVT-LK----LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp TCSEEEC-------------------CSSCCCC-CC----CCTTCCCSEEECCSSCE
T ss_pred cCCEEEC-------------------CCCccce-eC----chhhccCCEEEcCCCCc
Confidence 3333222 2244332 22 44567899999999974
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=7.8e-16 Score=173.21 Aligned_cols=237 Identities=16% Similarity=0.108 Sum_probs=141.0
Q ss_pred CCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHH
Q 038791 114 WPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQ 193 (683)
Q Consensus 114 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~ 193 (683)
+++++.+++.++.. .......+..+++|++|+|+++.+. +..+..+..+ ++|++|+|++|.. .++..
T Consensus 50 l~~l~~l~l~~~~l------~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l----~~L~~L~L~~n~l-~~~~~- 116 (597)
T 3oja_B 50 LNNQKIVTFKNSTM------RKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYA----HTIQKLYMGFNAI-RYLPP- 116 (597)
T ss_dssp GCCCSEEEESSCEE------SEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTC----TTCCEEECCSSCC-CCCCT-
T ss_pred CCCceEEEeeCCCC------CCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCC----CCCCEEECCCCcC-CCCCH-
Confidence 46788888876542 2222345678889999999988753 2222234444 4899999997652 22222
Q ss_pred HHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHH
Q 038791 194 EIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLI 273 (683)
Q Consensus 194 ~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~ 273 (683)
..+..+++|++|+++. +.++. ....+...+++|++|++++|. ++.. . +
T Consensus 117 ---~~~~~l~~L~~L~L~~-------n~l~~-l~~~~~~~l~~L~~L~Ls~N~-l~~~----------------~----~ 164 (597)
T 3oja_B 117 ---HVFQNVPLLTVLVLER-------NDLSS-LPRGIFHNTPKLTTLSMSNNN-LERI----------------E----D 164 (597)
T ss_dssp ---TTTTTCTTCCEEECCS-------SCCCC-CCTTTTTTCTTCCEEECCSSC-CCBC----------------C----T
T ss_pred ---HHHcCCCCCCEEEeeC-------CCCCC-CCHHHhccCCCCCEEEeeCCc-CCCC----------------C----h
Confidence 2336788899998831 13331 111222477888999888752 1111 0 1
Q ss_pred HHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHH
Q 038791 274 QLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMG 353 (683)
Q Consensus 274 ~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~ 353 (683)
..+..+++|++|+++++ .++... ...+++|+.|+++++. +..+...++|+.|+++++. ++...
T Consensus 165 ~~~~~l~~L~~L~L~~N-~l~~~~------~~~l~~L~~L~l~~n~---------l~~l~~~~~L~~L~ls~n~-l~~~~ 227 (597)
T 3oja_B 165 DTFQATTSLQNLQLSSN-RLTHVD------LSLIPSLFHANVSYNL---------LSTLAIPIAVEELDASHNS-INVVR 227 (597)
T ss_dssp TTTTTCTTCCEEECTTS-CCSBCC------GGGCTTCSEEECCSSC---------CSEEECCTTCSEEECCSSC-CCEEE
T ss_pred hhhhcCCcCcEEECcCC-CCCCcC------hhhhhhhhhhhcccCc---------cccccCCchhheeeccCCc-ccccc
Confidence 12456788888888874 555432 2457888888887632 2334556678888888864 43211
Q ss_pred HHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 354 LVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 354 l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
....++|+.|++++|. +++. ..+. .+ ++|+.|++++|...+.. +.....+++|+.|+|+
T Consensus 228 ----~~~~~~L~~L~L~~n~-l~~~--~~l~-~l-~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 228 ----GPVNVELTILKLQHNN-LTDT--AWLL-NY-PGLVEVDLSYNELEKIM---YHPFVKMQRLERLYIS 286 (597)
T ss_dssp ----CSCCSCCCEEECCSSC-CCCC--GGGG-GC-TTCSEEECCSSCCCEEE---SGGGTTCSSCCEEECT
T ss_pred ----cccCCCCCEEECCCCC-CCCC--hhhc-cC-CCCCEEECCCCccCCCC---HHHhcCccCCCEEECC
Confidence 1123578888888887 5543 2222 34 78888888877543211 1122345778888877
No 47
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=3.7e-14 Score=149.14 Aligned_cols=268 Identities=15% Similarity=0.093 Sum_probs=153.3
Q ss_pred cccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCC-CccEEEeccCCCCCCCCHHHHHHHHhhC-CCCceEEec
Q 038791 134 GAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSA-NLTCLNLLTTSFTEGFKAQEIREITAAC-PSLNKLLVA 211 (683)
Q Consensus 134 ~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~c~~i~~~~l~~l~~~~-~~L~~L~L~ 211 (683)
.+.++.++...++|++|+|++|.+.+.........+ ..++ +|++|+|++|.. .......+....... ++|++|+++
T Consensus 11 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 11 SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAF-ANTPASVTSLNLSGNSL-GFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-HTCCTTCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHH-HhCCCceeEEECcCCCC-CHHHHHHHHHHHhccCCCccEEECc
Confidence 344555666666688888888876433322211222 2334 788888886641 122233344444444 788888883
Q ss_pred eecCCCCccccCH---HHHHHHHhcC-CCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhC-CCCCcEEE
Q 038791 212 CTFDPRYIGFVND---ETLSAIATNC-PKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSG-LPLLEELV 286 (683)
Q Consensus 212 c~~~~~~~~~l~~---~~l~~l~~~~-~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~-~~~L~~L~ 286 (683)
.+.+++ ..+......+ ++|++|++++|. + .......+...+.. +++|++|+
T Consensus 89 -------~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l----------------~~~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 89 -------GNFLSYKSSDELVKTLAAIPFTITVLDLGWND-F----------------SSKSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp -------SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-G----------------GGSCHHHHHHHHTTSCTTCCEEE
T ss_pred -------CCcCChHHHHHHHHHHHhCCCCccEEECcCCc-C----------------CcHHHHHHHHHHHhCCCceeEEE
Confidence 123333 3333333344 788888887652 1 11222334444444 35888888
Q ss_pred eccccCcCCChh-HHHHHHhcCC-CCcEEEecCccccccccccccc----ccccC-CCCcEEEeccCCCCCHHHHHHH--
Q 038791 287 LDVCKNVRDSGP-VLEVLKSKCS-SLKVLKLGQFHGVCLAIGWQLD----GVSLC-GGLESLSIKNCGDLSDMGLVAI-- 357 (683)
Q Consensus 287 L~~c~~l~~~~~-~l~~l~~~~~-~L~~L~L~~c~~l~~~~~~~~~----~l~~~-~~L~~L~L~~~~~lt~~~l~~l-- 357 (683)
+++| .+++.+. .+.......+ +|++|++++|.- + +.+.. .+..+ ++|++|++++|. +++.+...+
T Consensus 145 Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~ 218 (362)
T 3goz_A 145 LRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNL-A---SKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAY 218 (362)
T ss_dssp CTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-G---GSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHH
T ss_pred ccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCC-c---hhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHH
Confidence 8884 5665442 2333334455 888888887532 2 23332 33345 489999998875 776444433
Q ss_pred --HhcCCCCcEEEecCCCCCCHHHHHHHHH---hcccCccEEEeeccc--ccChhhHHHHHHh---cCCCccEEEEeeec
Q 038791 358 --GRGCRRLIKFELEGCKNVTVDGLRTMAA---LRRETLVEMKISCCK--QLGAVASCKALDL---VRDRIEKLHIDCVW 427 (683)
Q Consensus 358 --~~~~~~L~~L~L~~c~~it~~~l~~l~~---~~~~~L~~L~l~~c~--~l~~~~~l~~l~~---~~~~L~~L~L~c~~ 427 (683)
....++|++|+|++|. +++.+...+.. .+ ++|+.|++++|. .+ +...+..+.. .+++|+.|+++++.
T Consensus 219 ~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l-~~L~~L~L~~n~l~~i-~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSL-KHLQTVYLDYDIVKNM-SKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTT-TTCSEEEEEHHHHTTC-CHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcC-CCccEEEeccCCcccc-CHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3334689999999987 77766555443 34 789999999886 23 2223444443 34567777777666
Q ss_pred CChhhHHHH
Q 038791 428 DGLELTESS 436 (683)
Q Consensus 428 ~~~~~~~~~ 436 (683)
+.......+
T Consensus 296 l~~~~~~~~ 304 (362)
T 3goz_A 296 IHPSHSIPI 304 (362)
T ss_dssp CCGGGCHHH
T ss_pred CCCcchHHH
Confidence 665544443
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=3.5e-16 Score=176.03 Aligned_cols=307 Identities=14% Similarity=0.107 Sum_probs=195.5
Q ss_pred CCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCC
Q 038791 174 ANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERG 253 (683)
Q Consensus 174 ~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~ 253 (683)
.+++.|+++++. -..+.. .++..+++|+.|+++. +.++......+ ..+++|++|++++|. ++..+
T Consensus 51 ~~l~~l~l~~~~-l~~lp~----~~~~~l~~L~~L~L~~-------n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~- 115 (597)
T 3oja_B 51 NNQKIVTFKNST-MRKLPA----ALLDSFRQVELLNLND-------LQIEEIDTYAF-AYAHTIQKLYMGFNA-IRYLP- 115 (597)
T ss_dssp CCCSEEEESSCE-ESEECT----HHHHHCCCCSEEECTT-------SCCCEECTTTT-TTCTTCCEEECCSSC-CCCCC-
T ss_pred CCceEEEeeCCC-CCCcCH----HHHccCCCCcEEECCC-------CCCCCCChHHh-cCCCCCCEEECCCCc-CCCCC-
Confidence 489999999764 223333 3456789999999931 23332221222 378899999998753 21111
Q ss_pred CCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccc
Q 038791 254 DPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVS 333 (683)
Q Consensus 254 ~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~ 333 (683)
+..+..+++|++|+|+++ .++... ..++..+++|++|+++++.- .+..+..++
T Consensus 116 -------------------~~~~~~l~~L~~L~L~~n-~l~~l~---~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~ 168 (597)
T 3oja_B 116 -------------------PHVFQNVPLLTVLVLERN-DLSSLP---RGIFHNTPKLTTLSMSNNNL----ERIEDDTFQ 168 (597)
T ss_dssp -------------------TTTTTTCTTCCEEECCSS-CCCCCC---TTTTTTCTTCCEEECCSSCC----CBCCTTTTT
T ss_pred -------------------HHHHcCCCCCCEEEeeCC-CCCCCC---HHHhccCCCCCEEEeeCCcC----CCCChhhhh
Confidence 112456889999999884 565432 22346788999999987532 233445677
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHh
Q 038791 334 LCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDL 413 (683)
Q Consensus 334 ~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~ 413 (683)
.+++|++|++++|. ++... + ..+++|+.|++++|. ++... .. ++|+.|++++|... .... .
T Consensus 169 ~l~~L~~L~L~~N~-l~~~~---~-~~l~~L~~L~l~~n~-l~~l~------~~-~~L~~L~ls~n~l~-~~~~-----~ 229 (597)
T 3oja_B 169 ATTSLQNLQLSSNR-LTHVD---L-SLIPSLFHANVSYNL-LSTLA------IP-IAVEELDASHNSIN-VVRG-----P 229 (597)
T ss_dssp TCTTCCEEECTTSC-CSBCC---G-GGCTTCSEEECCSSC-CSEEE------CC-TTCSEEECCSSCCC-EEEC-----S
T ss_pred cCCcCcEEECcCCC-CCCcC---h-hhhhhhhhhhcccCc-ccccc------CC-chhheeeccCCccc-cccc-----c
Confidence 88999999999875 55532 2 337889999998887 54321 12 67888888877543 2211 1
Q ss_pred cCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeee
Q 038791 414 VRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSI 493 (683)
Q Consensus 414 ~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L 493 (683)
..++|+.|+++.+.++ + ...+ ..+++|+.|++
T Consensus 230 ~~~~L~~L~L~~n~l~---------------------------------------------~--~~~l-~~l~~L~~L~L 261 (597)
T 3oja_B 230 VNVELTILKLQHNNLT---------------------------------------------D--TAWL-LNYPGLVEVDL 261 (597)
T ss_dssp CCSCCCEEECCSSCCC---------------------------------------------C--CGGG-GGCTTCSEEEC
T ss_pred cCCCCCEEECCCCCCC---------------------------------------------C--Chhh-ccCCCCCEEEC
Confidence 2367888888732221 1 1111 23789999997
Q ss_pred eeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCch
Q 038791 494 WIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLT 573 (683)
Q Consensus 494 ~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~ 573 (683)
+ ++.+++..+..+.++++|+.|+++ +|... .+ +..+..+++|+.|+|+.|.+.+ .|..+..++
T Consensus 262 s---~N~l~~~~~~~~~~l~~L~~L~Ls---~N~l~------~l-~~~~~~l~~L~~L~Ls~N~l~~----i~~~~~~l~ 324 (597)
T 3oja_B 262 S---YNELEKIMYHPFVKMQRLERLYIS---NNRLV------AL-NLYGQPIPTLKVLDLSHNHLLH----VERNQPQFD 324 (597)
T ss_dssp C---SSCCCEEESGGGTTCSSCCEEECT---TSCCC------EE-ECSSSCCTTCCEEECCSSCCCC----CGGGHHHHT
T ss_pred C---CCccCCCCHHHhcCccCCCEEECC---CCCCC------CC-CcccccCCCCcEEECCCCCCCc----cCcccccCC
Confidence 4 488888877778999999999999 88321 11 3345668999999999998774 244444444
Q ss_pred hhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 574 LWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 574 ~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
.|+.+++ ..|.++. +| ++.+++|+.|++++|..
T Consensus 325 ~L~~L~L-------------------~~N~l~~-~~----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 325 RLENLYL-------------------DHNSIVT-LK----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp TCSEEEC-------------------CSSCCCC-CC----CCTTCCCSEEECCSSCE
T ss_pred CCCEEEC-------------------CCCCCCC-cC----hhhcCCCCEEEeeCCCC
Confidence 3333322 2344433 22 44567899999999984
No 49
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=9.3e-14 Score=146.11 Aligned_cols=258 Identities=17% Similarity=0.100 Sum_probs=170.8
Q ss_pred HHHhccCCCccEEEeccccccccCCCcccHHHHhhcCC-CCCEEEeeCccccCCChhHHHhhc-CccCCCccEEEeccCC
Q 038791 108 EILLPQWPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCE-CLKSIDLSNFYFWTEDLPPVLRAY-PEKSANLTCLNLLTTS 185 (683)
Q Consensus 108 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~-~L~~L~Ls~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~ 185 (683)
..+....++|++|+|+++.... .....+...+..++ +|++|+|++|.+.+ ..+..+... ...+++|++|+|++|.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYS--ISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGG--SCHHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHhCCCCceEEEccCCCCCh--HHHHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCCccEEECcCCc
Confidence 3445555679999999776332 01123446777888 89999999998753 333444443 1112599999999875
Q ss_pred CCCCCCHHHHHHHHhhC-CCCceEEeceecCCCCccccCHHHHHHHH---hc-CCCCcEEeecCCCCCCCCCCCCCCCCC
Q 038791 186 FTEGFKAQEIREITAAC-PSLNKLLVACTFDPRYIGFVNDETLSAIA---TN-CPKLTLLHLVDTSSLANERGDPDSDGF 260 (683)
Q Consensus 186 ~c~~i~~~~l~~l~~~~-~~L~~L~L~c~~~~~~~~~l~~~~l~~l~---~~-~~~L~~L~L~~c~~l~~~~~~~~~~g~ 260 (683)
. .......+...+..+ ++|++|+++ .+.+++.....++ .. +++|++|++++|
T Consensus 92 l-~~~~~~~l~~~l~~~~~~L~~L~Ls-------~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--------------- 148 (362)
T 3goz_A 92 L-SYKSSDELVKTLAAIPFTITVLDLG-------WNDFSSKSSSEFKQAFSNLPASITSLNLRGN--------------- 148 (362)
T ss_dssp G-GGSCHHHHHHHHHTSCTTCCEEECC-------SSCGGGSCHHHHHHHHTTSCTTCCEEECTTS---------------
T ss_pred C-ChHHHHHHHHHHHhCCCCccEEECc-------CCcCCcHHHHHHHHHHHhCCCceeEEEccCC---------------
Confidence 2 223344555656666 899999994 2245544444333 33 579999999975
Q ss_pred ccCCCCcCH---HHHHHHHhCCC-CCcEEEeccccCcCCCh-hHHHHHHhcC-CCCcEEEecCcccccccccccc----c
Q 038791 261 TAEDASVSR---EGLIQLFSGLP-LLEELVLDVCKNVRDSG-PVLEVLKSKC-SSLKVLKLGQFHGVCLAIGWQL----D 330 (683)
Q Consensus 261 ~~~~~~lt~---~~l~~l~~~~~-~L~~L~L~~c~~l~~~~-~~l~~l~~~~-~~L~~L~L~~c~~l~~~~~~~~----~ 330 (683)
.+++ ..+...+...+ +|++|++++| .+++.+ ..+......+ ++|++|+++++. ..+.+. .
T Consensus 149 -----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----i~~~~~~~l~~ 218 (362)
T 3goz_A 149 -----DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL----LGLKSYAELAY 218 (362)
T ss_dssp -----CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHH
T ss_pred -----cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC----CChhHHHHHHH
Confidence 3443 34444455565 9999999995 666544 2344445566 599999999854 222232 3
Q ss_pred cccc-CCCCcEEEeccCCCCCHHHHHHH---HhcCCCCcEEEecCCC--CCCHHHHHHHHHhcc--cCccEEEeeccccc
Q 038791 331 GVSL-CGGLESLSIKNCGDLSDMGLVAI---GRGCRRLIKFELEGCK--NVTVDGLRTMAALRR--ETLVEMKISCCKQL 402 (683)
Q Consensus 331 ~l~~-~~~L~~L~L~~~~~lt~~~l~~l---~~~~~~L~~L~L~~c~--~it~~~l~~l~~~~~--~~L~~L~l~~c~~l 402 (683)
.+.. .++|++|++++|. +++.+...+ ...+++|+.|++++|. .++..++..+...+. ++|++|++++|...
T Consensus 219 ~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 3333 5699999999985 787555443 3557899999999986 578888877765431 66888999987643
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.55 E-value=2e-16 Score=171.46 Aligned_cols=108 Identities=20% Similarity=0.288 Sum_probs=35.3
Q ss_pred CCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeeccc
Q 038791 486 KGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTA 565 (683)
Q Consensus 486 ~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~ 565 (683)
++|+.|+++ ++.+++++. .+++|+.|+++ +|....- + . .+++|+.|+++.|.+.|.. ..
T Consensus 317 ~~L~~L~Ls---~N~l~~lp~----~~~~L~~L~L~---~N~l~~l-------p-~--~l~~L~~L~L~~N~l~~l~-~i 375 (454)
T 1jl5_A 317 PSLEELNVS---NNKLIELPA----LPPRLERLIAS---FNHLAEV-------P-E--LPQNLKQLHVEYNPLREFP-DI 375 (454)
T ss_dssp TTCCEEECC---SSCCSCCCC----CCTTCCEEECC---SSCCSCC-------C-C--CCTTCCEEECCSSCCSSCC-CC
T ss_pred CcCCEEECC---CCccccccc----cCCcCCEEECC---CCccccc-------c-c--hhhhccEEECCCCCCCcCC-CC
Confidence 467777753 355544322 24677777777 6632111 1 1 3567777777777666521 23
Q ss_pred CCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchhhHHHHHHhcCC-ccc
Q 038791 566 PGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMP-NVR 644 (683)
Q Consensus 566 p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~~~~~~~~~~~~-~~~ 644 (683)
|..+.++ ..|.+.+.+|.. +++|+.|++++|.-.. +..+| +|+
T Consensus 376 p~~l~~L---------------------------~~n~~~~~i~~~-----~~~L~~L~ls~N~l~~----~~~iP~sl~ 419 (454)
T 1jl5_A 376 PESVEDL---------------------------RMNSHLAEVPEL-----PQNLKQLHVETNPLRE----FPDIPESVE 419 (454)
T ss_dssp CTTCCEE---------------------------ECCC------------------------------------------
T ss_pred hHHHHhh---------------------------hhcccccccccc-----cCcCCEEECCCCcCCc----cccchhhHh
Confidence 4433322 225555666652 3578888888874321 22333 355
Q ss_pred cccccc
Q 038791 645 DVQLRE 650 (683)
Q Consensus 645 ~~~~~~ 650 (683)
.+.+..
T Consensus 420 ~L~~~~ 425 (454)
T 1jl5_A 420 DLRMNS 425 (454)
T ss_dssp ------
T ss_pred heeCcC
Confidence 555544
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.55 E-value=3e-16 Score=161.59 Aligned_cols=251 Identities=14% Similarity=0.107 Sum_probs=158.2
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
.++++|+++++ .+++... ++..+.++++|++|+++++..+. +..+..++.+++|++|+++++. ++......+..
T Consensus 50 ~~l~~L~L~~~-~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYP-IPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECC-CCSSCEE-CCGGGGGCTTCSEEEEEEETTEE---SCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGG
T ss_pred ceEEEEECCCC-CccCCcc-cChhHhCCCCCCeeeCCCCCccc---ccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhC
Confidence 57899999884 5654100 33345678999999998533332 3556778889999999999875 55433344444
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCC-CccEEEEeeecCChhhHHHHhh
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRD-RIEKLHIDCVWDGLELTESSES 438 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~-~L~~L~L~c~~~~~~~~~~~~~ 438 (683)
+++|++|++++|. +++.....+.. + ++|++|++++|...+.. +.....++ +|+.|+++.+.+
T Consensus 124 -l~~L~~L~Ls~N~-l~~~~p~~~~~-l-~~L~~L~L~~N~l~~~~---p~~l~~l~~~L~~L~L~~N~l---------- 186 (313)
T 1ogq_A 124 -IKTLVTLDFSYNA-LSGTLPPSISS-L-PNLVGITFDGNRISGAI---PDSYGSFSKLFTSMTISRNRL---------- 186 (313)
T ss_dssp -CTTCCEEECCSSE-EESCCCGGGGG-C-TTCCEEECCSSCCEEEC---CGGGGCCCTTCCEEECCSSEE----------
T ss_pred -CCCCCEEeCCCCc-cCCcCChHHhc-C-CCCCeEECcCCcccCcC---CHHHhhhhhcCcEEECcCCee----------
Confidence 8899999998887 55333333333 3 88999999887653221 11222344 788888873222
Q ss_pred hccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCccee
Q 038791 439 KVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEI 518 (683)
Q Consensus 439 ~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L 518 (683)
++.....++ .++ |+.|+++ ++.+++.....+.++++|+.|
T Consensus 187 -----------------------------------~~~~~~~~~-~l~-L~~L~Ls---~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 187 -----------------------------------TGKIPPTFA-NLN-LAFVDLS---RNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp -----------------------------------EEECCGGGG-GCC-CSEEECC---SSEEEECCGGGCCTTSCCSEE
T ss_pred -----------------------------------eccCChHHh-CCc-ccEEECc---CCcccCcCCHHHhcCCCCCEE
Confidence 111111122 133 7888863 366666666667888888888
Q ss_pred eecccCCCCCCCCCCCccch--hhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhcccceeeeccccCCCC
Q 038791 519 RIKMEGDSRGRQKPSDRAFG--LSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPA 596 (683)
Q Consensus 519 ~l~~~~~c~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~ 596 (683)
+++ +| .+. +..+..+++|++|+++.|.+.|.. |..+.+++. |..|
T Consensus 227 ~L~---~N---------~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~-------------L~~L----- 273 (313)
T 1ogq_A 227 HLA---KN---------SLAFDLGKVGLSKNLNGLDLRNNRIYGTL---PQGLTQLKF-------------LHSL----- 273 (313)
T ss_dssp ECC---SS---------EECCBGGGCCCCTTCCEEECCSSCCEECC---CGGGGGCTT-------------CCEE-----
T ss_pred ECC---CC---------ceeeecCcccccCCCCEEECcCCcccCcC---ChHHhcCcC-------------CCEE-----
Confidence 888 77 232 334667788888888888877643 444444333 2233
Q ss_pred CCcCccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 597 QDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 597 ~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
++..|++++.+|.. +++++|+.|++.+|..
T Consensus 274 -~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 274 -NVSFNNLCGEIPQG---GNLQRFDVSAYANNKC 303 (313)
T ss_dssp -ECCSSEEEEECCCS---TTGGGSCGGGTCSSSE
T ss_pred -ECcCCcccccCCCC---ccccccChHHhcCCCC
Confidence 22457788888874 6677888888888753
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.51 E-value=1.7e-15 Score=156.05 Aligned_cols=231 Identities=16% Similarity=0.107 Sum_probs=157.1
Q ss_pred HHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHH
Q 038791 275 LFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGL 354 (683)
Q Consensus 275 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l 354 (683)
.+..+++|++|++++++++.+. ++..+.++++|++|+++++ ...+..+..++.+++|++|+++++. ++....
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~---~p~~l~~l~~L~~L~Ls~n----~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p 142 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGP---IPPAIAKLTQLHYLYITHT----NVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLP 142 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESC---CCGGGGGCTTCSEEEEEEE----CCEEECCGGGGGCTTCCEEECCSSE-EESCCC
T ss_pred hHhCCCCCCeeeCCCCCccccc---CChhHhcCCCCCEEECcCC----eeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCC
Confidence 3567999999999965666543 3334577999999999974 3334566778899999999999975 554333
Q ss_pred HHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHH
Q 038791 355 VAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTE 434 (683)
Q Consensus 355 ~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~ 434 (683)
..+.. +++|++|++++|. +++.....+.... ++|++|++++|...+..+ ......+ |+.|+++.+.+
T Consensus 143 ~~~~~-l~~L~~L~L~~N~-l~~~~p~~l~~l~-~~L~~L~L~~N~l~~~~~---~~~~~l~-L~~L~Ls~N~l------ 209 (313)
T 1ogq_A 143 PSISS-LPNLVGITFDGNR-ISGAIPDSYGSFS-KLFTSMTISRNRLTGKIP---PTFANLN-LAFVDLSRNML------ 209 (313)
T ss_dssp GGGGG-CTTCCEEECCSSC-CEEECCGGGGCCC-TTCCEEECCSSEEEEECC---GGGGGCC-CSEEECCSSEE------
T ss_pred hHHhc-CCCCCeEECcCCc-ccCcCCHHHhhhh-hcCcEEECcCCeeeccCC---hHHhCCc-ccEEECcCCcc------
Confidence 44444 8999999999998 6644334444331 389999999886542211 1122334 99999983221
Q ss_pred HHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCC
Q 038791 435 SSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPV 514 (683)
Q Consensus 435 ~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~ 514 (683)
+......+ ..+++|+.|+++ ++.++..... +..+++
T Consensus 210 ---------------------------------------~~~~~~~~-~~l~~L~~L~L~---~N~l~~~~~~-~~~l~~ 245 (313)
T 1ogq_A 210 ---------------------------------------EGDASVLF-GSDKNTQKIHLA---KNSLAFDLGK-VGLSKN 245 (313)
T ss_dssp ---------------------------------------EECCGGGC-CTTSCCSEEECC---SSEECCBGGG-CCCCTT
T ss_pred ---------------------------------------cCcCCHHH-hcCCCCCEEECC---CCceeeecCc-ccccCC
Confidence 11111111 237889999974 3666544443 778899
Q ss_pred cceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhccc
Q 038791 515 LEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGI 583 (683)
Q Consensus 515 L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~ 583 (683)
|++|+++ +|... ...+..+..+++|+.|+++.|.++|.. |.. .+++.++.+++.+-
T Consensus 246 L~~L~Ls---~N~l~------~~~p~~l~~l~~L~~L~Ls~N~l~~~i---p~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 246 LNGLDLR---NNRIY------GTLPQGLTQLKFLHSLNVSFNNLCGEI---PQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CCEEECC---SSCCE------ECCCGGGGGCTTCCEEECCSSEEEEEC---CCS-TTGGGSCGGGTCSS
T ss_pred CCEEECc---CCccc------CcCChHHhcCcCCCEEECcCCcccccC---CCC-ccccccChHHhcCC
Confidence 9999999 88311 122667889999999999999999864 443 66777666666553
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=152.16 Aligned_cols=192 Identities=16% Similarity=0.049 Sum_probs=102.8
Q ss_pred HhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHH
Q 038791 276 FSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLV 355 (683)
Q Consensus 276 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~ 355 (683)
+..+++|++|+++++ .++... .......+++|++|+++++..+.. .....++.+++|++|+++++. ++.....
T Consensus 120 ~~~l~~L~~L~L~~n-~l~~l~--~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 192 (353)
T 2z80_A 120 FKPLSSLTFLNLLGN-PYKTLG--ETSLFSHLTKLQILRVGNMDTFTK---IQRKDFAGLTFLEELEIDASD-LQSYEPK 192 (353)
T ss_dssp HTTCTTCSEEECTTC-CCSSSC--SSCSCTTCTTCCEEEEEESSSCCE---ECTTTTTTCCEEEEEEEEETT-CCEECTT
T ss_pred hCCCccCCEEECCCC-CCcccC--chhhhccCCCCcEEECCCCccccc---cCHHHccCCCCCCEEECCCCC-cCccCHH
Confidence 345666666666653 343211 001234566677777665432211 223445566777777777654 4443333
Q ss_pred HHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHH
Q 038791 356 AIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTES 435 (683)
Q Consensus 356 ~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~ 435 (683)
.+.. +++|++|++++|. ++..... +...+ ++|+.|++++|...+....-......++.++.+++..+.++...+..
T Consensus 193 ~l~~-l~~L~~L~l~~n~-l~~~~~~-~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 193 SLKS-IQNVSHLILHMKQ-HILLLEI-FVDVT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp TTTT-CSEEEEEEEECSC-STTHHHH-HHHHT-TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred HHhc-cccCCeecCCCCc-cccchhh-hhhhc-ccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 3333 6777777777776 5443322 22334 77888888776543211000011224567777877755555444444
Q ss_pred HhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCc
Q 038791 436 SESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVL 515 (683)
Q Consensus 436 ~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L 515 (683)
++..+. .+++|+.|+++ ++.++.++...+.++++|
T Consensus 269 l~~~l~------------------------------------------~l~~L~~L~Ls---~N~l~~i~~~~~~~l~~L 303 (353)
T 2z80_A 269 VMKLLN------------------------------------------QISGLLELEFS---RNQLKSVPDGIFDRLTSL 303 (353)
T ss_dssp HHHHHH------------------------------------------TCTTCCEEECC---SSCCCCCCTTTTTTCTTC
T ss_pred hHHHHh------------------------------------------cccCCCEEECC---CCCCCccCHHHHhcCCCC
Confidence 332211 25677888763 466665555445778888
Q ss_pred ceeeecccCCC
Q 038791 516 EEIRIKMEGDS 526 (683)
Q Consensus 516 ~~L~l~~~~~c 526 (683)
++|+++ +|
T Consensus 304 ~~L~L~---~N 311 (353)
T 2z80_A 304 QKIWLH---TN 311 (353)
T ss_dssp CEEECC---SS
T ss_pred CEEEee---CC
Confidence 888888 66
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.46 E-value=2.7e-15 Score=155.46 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=44.8
Q ss_pred CCCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHH
Q 038791 114 WPGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQ 193 (683)
Q Consensus 114 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~ 193 (683)
.++++.|+++++... .++..+..+++|++|+|++|.+. .+|..+..++ +|++|+|++|... .+
T Consensus 80 ~~~l~~L~L~~n~l~-------~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~----~L~~L~Ls~n~l~-~l--- 142 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-------QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFA----GLETLTLARNPLR-AL--- 142 (328)
T ss_dssp STTCCEEEEESSCCS-------SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGT----TCSEEEEESCCCC-CC---
T ss_pred ccceeEEEccCCCch-------hcChhhhhCCCCCEEECCCCCcc--chhHHHhccC----CCCEEECCCCccc-cC---
Confidence 466777777754422 23333455777777777777653 4444444444 7777777765421 22
Q ss_pred HHHHHHhhCCCCceEEe
Q 038791 194 EIREITAACPSLNKLLV 210 (683)
Q Consensus 194 ~l~~l~~~~~~L~~L~L 210 (683)
+..+..+++|++|++
T Consensus 143 --p~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 143 --PASIASLNRLRELSI 157 (328)
T ss_dssp --CGGGGGCTTCCEEEE
T ss_pred --cHHHhcCcCCCEEEC
Confidence 222456666666666
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.44 E-value=1.1e-13 Score=149.72 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=29.7
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccC-------------cccccc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRY-------------PQLTKL 551 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l-------------~~L~~L 551 (683)
+++|+.|+++ ++.++.++. .+++|++|+++ +|.-...|.. |..+..+ ++|+.|
T Consensus 336 ~~~L~~L~L~---~N~l~~lp~----~l~~L~~L~L~---~N~l~~l~~i----p~~l~~L~~n~~~~~i~~~~~~L~~L 401 (454)
T 1jl5_A 336 PPRLERLIAS---FNHLAEVPE----LPQNLKQLHVE---YNPLREFPDI----PESVEDLRMNSHLAEVPELPQNLKQL 401 (454)
T ss_dssp CTTCCEEECC---SSCCSCCCC----CCTTCCEEECC---SSCCSSCCCC----CTTCCEEECCC---------------
T ss_pred CCcCCEEECC---CCccccccc----hhhhccEEECC---CCCCCcCCCC----hHHHHhhhhcccccccccccCcCCEE
Confidence 6889999974 477776554 47899999999 8853321110 2233333 789999
Q ss_pred cccccccceeecccCCCCC
Q 038791 552 RLEFGETIGYALTAPGGET 570 (683)
Q Consensus 552 ~l~~~~~~g~~~~~p~~~~ 570 (683)
+++.|.+.|+ ...|..+.
T Consensus 402 ~ls~N~l~~~-~~iP~sl~ 419 (454)
T 1jl5_A 402 HVETNPLREF-PDIPESVE 419 (454)
T ss_dssp -------------------
T ss_pred ECCCCcCCcc-ccchhhHh
Confidence 9999988874 23455443
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.43 E-value=3.3e-14 Score=161.23 Aligned_cols=123 Identities=16% Similarity=0.088 Sum_probs=83.4
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
+++++.++++ .+.++......+.++++|+.|+++ +|.... .+.+..+..+++|+.|+|+.|.+.+.
T Consensus 444 l~~l~~l~ls---~n~l~~~~~~~~~~~~~L~~L~Ls---~N~~~~-----~~~~~~~~~l~~L~~L~Ls~N~L~~l--- 509 (635)
T 4g8a_A 444 LRNLIYLDIS---HTHTRVAFNGIFNGLSSLEVLKMA---GNSFQE-----NFLPDIFTELRNLTFLDLSQCQLEQL--- 509 (635)
T ss_dssp CTTCCEEECT---TSCCEECCTTTTTTCTTCCEEECT---TCEEGG-----GEECSCCTTCTTCCEEECTTSCCCEE---
T ss_pred cccccccccc---ccccccccccccccchhhhhhhhh---hccccc-----ccCchhhhhccccCEEECCCCccCCc---
Confidence 4445555542 244444444445667777788777 663211 12255688899999999999998874
Q ss_pred cCCCCCCchhhHHHhhcc----------ccee-eeccccCCCCCCcCccCcccCcccchHHHHh-hhhhhhhhccch
Q 038791 565 APGGETDLTLWDRFFFNG----------IGNL-RLNELDYWPAQDRDVNQRSLTLPASGLIAQC-LTLRKLIIHGTA 629 (683)
Q Consensus 565 ~p~~~~~l~~l~~~~l~~----------~~~l-~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~-~~L~~l~~~~~~ 629 (683)
.|..+.+++.|+.+++++ ++.| +|+.| ++..|++++..|.. ++.+ ++|+.|++++|.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L------~Ls~N~l~~~~~~~--l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL------DYSLNHIMTSKKQE--LQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE------ECTTSCCCBCCSSC--TTCCCTTCCEEECTTCC
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE------ECCCCcCCCCCHHH--HHhhhCcCCEEEeeCCC
Confidence 367788888888888865 2233 34444 45779999888876 7777 689999999865
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.42 E-value=2.7e-14 Score=148.21 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=56.7
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
++|++|+++++ .++... ......+++|+.|+++++.--. .+.....+..+++|++|+++++. ++.... .
T Consensus 121 ~~L~~L~l~~n-~l~~~~---~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~----~ 189 (330)
T 1xku_A 121 KTLQELRVHEN-EITKVR---KSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLSYIRIADTN-ITTIPQ----G 189 (330)
T ss_dssp TTCCEEECCSS-CCCBBC---HHHHTTCTTCCEEECCSSCCCG--GGBCTTGGGGCTTCCEEECCSSC-CCSCCS----S
T ss_pred ccccEEECCCC-cccccC---HhHhcCCccccEEECCCCcCCc--cCcChhhccCCCCcCEEECCCCc-cccCCc----c
Confidence 56777777763 454332 2334567777777777643210 01233455667777777777764 432100 1
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeeccc
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCK 400 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~ 400 (683)
..++|++|++++|. +++.....+.. + ++|++|++++|.
T Consensus 190 ~~~~L~~L~l~~n~-l~~~~~~~~~~-l-~~L~~L~Ls~n~ 227 (330)
T 1xku_A 190 LPPSLTELHLDGNK-ITKVDAASLKG-L-NNLAKLGLSFNS 227 (330)
T ss_dssp CCTTCSEEECTTSC-CCEECTGGGTT-C-TTCCEEECCSSC
T ss_pred ccccCCEEECCCCc-CCccCHHHhcC-C-CCCCEEECCCCc
Confidence 12567777776665 44432222322 2 566666666554
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.42 E-value=5.6e-14 Score=145.50 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=36.7
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
.+.++.|++++ +.++. ++..+..+++|++|+++++.- . ..+..++.+++|++|++++|. ++ .....+.
T Consensus 80 ~~~l~~L~L~~-n~l~~----lp~~l~~l~~L~~L~L~~n~l----~-~lp~~~~~l~~L~~L~Ls~n~-l~-~lp~~l~ 147 (328)
T 4fcg_A 80 QPGRVALELRS-VPLPQ----FPDQAFRLSHLQHMTIDAAGL----M-ELPDTMQQFAGLETLTLARNP-LR-ALPASIA 147 (328)
T ss_dssp STTCCEEEEES-SCCSS----CCSCGGGGTTCSEEEEESSCC----C-CCCSCGGGGTTCSEEEEESCC-CC-CCCGGGG
T ss_pred ccceeEEEccC-CCchh----cChhhhhCCCCCEEECCCCCc----c-chhHHHhccCCCCEEECCCCc-cc-cCcHHHh
Confidence 35666666665 23432 222223355666666654321 1 233444555555555555543 33 1111222
Q ss_pred hcCCCCcEEEecCCC
Q 038791 359 RGCRRLIKFELEGCK 373 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~ 373 (683)
.+++|+.|++++|.
T Consensus 148 -~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 148 -SLNRLRELSIRACP 161 (328)
T ss_dssp -GCTTCCEEEEEEET
T ss_pred -cCcCCCEEECCCCC
Confidence 24455555555443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.40 E-value=9e-14 Score=143.34 Aligned_cols=249 Identities=10% Similarity=-0.013 Sum_probs=157.6
Q ss_pred HHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCC
Q 038791 271 GLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLS 350 (683)
Q Consensus 271 ~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt 350 (683)
.+..+...+++|++|+++++ .+++.. +..+..+++|++|+++++.-. + ...+..+++|++|++++|. ++
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n-~l~~~~---~~~~~~l~~L~~L~Ls~n~l~----~--~~~~~~l~~L~~L~Ls~n~-l~ 93 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGN-PLSQIS---AADLAPFTKLELLNLSSNVLY----E--TLDLESLSTLRTLDLNNNY-VQ 93 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTS-CCCCCC---HHHHTTCTTCCEEECTTSCCE----E--EEEETTCTTCCEEECCSSE-EE
T ss_pred hHHHHhccCCCCCEEECcCC-ccCcCC---HHHhhCCCcCCEEECCCCcCC----c--chhhhhcCCCCEEECcCCc-cc
Confidence 44566677889999999994 676642 344578999999999985431 1 1237789999999999975 54
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCCh
Q 038791 351 DMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGL 430 (683)
Q Consensus 351 ~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~ 430 (683)
+. . .+++|+.|++++|. +++.... .+ ++|++|++++|....... .....+++|+.|+++.+.++.
T Consensus 94 ~l-----~-~~~~L~~L~l~~n~-l~~~~~~----~~-~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 94 EL-----L-VGPSIETLHAANNN-ISRVSCS----RG-QGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp EE-----E-ECTTCCEEECCSSC-CSEEEEC----CC-SSCEEEECCSSCCCSGGG---BCTGGGSSEEEEECTTSCCCE
T ss_pred cc-----c-CCCCcCEEECCCCc-cCCcCcc----cc-CCCCEEECCCCCCCCccc---hhhhccCCCCEEECCCCCCCc
Confidence 31 1 35889999999987 6543221 23 789999998776542111 011235778888887332211
Q ss_pred hhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCC
Q 038791 431 ELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLD 510 (683)
Q Consensus 431 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~ 510 (683)
.........+++|+.|+++ ++.++... ...
T Consensus 159 ---------------------------------------------~~~~~~~~~l~~L~~L~L~---~N~l~~~~--~~~ 188 (317)
T 3o53_A 159 ---------------------------------------------VNFAELAASSDTLEHLNLQ---YNFIYDVK--GQV 188 (317)
T ss_dssp ---------------------------------------------EEGGGGGGGTTTCCEEECT---TSCCCEEE--CCC
T ss_pred ---------------------------------------------ccHHHHhhccCcCCEEECC---CCcCcccc--ccc
Confidence 1111111236788888873 46666552 344
Q ss_pred CCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhcccceeeecc
Q 038791 511 DCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNE 590 (683)
Q Consensus 511 ~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~~l~l~~ 590 (683)
.+++|++|+++ +|... .+ +..+..+++|+.|+++.|.+.+. |..+..++.++.+++
T Consensus 189 ~l~~L~~L~Ls---~N~l~------~l-~~~~~~l~~L~~L~L~~N~l~~l----~~~~~~l~~L~~L~l---------- 244 (317)
T 3o53_A 189 VFAKLKTLDLS---SNKLA------FM-GPEFQSAAGVTWISLRNNKLVLI----EKALRFSQNLEHFDL---------- 244 (317)
T ss_dssp CCTTCCEEECC---SSCCC------EE-CGGGGGGTTCSEEECTTSCCCEE----CTTCCCCTTCCEEEC----------
T ss_pred ccccCCEEECC---CCcCC------cc-hhhhcccCcccEEECcCCcccch----hhHhhcCCCCCEEEc----------
Confidence 58889999998 77311 11 33477888999999988887742 444444443322222
Q ss_pred ccCCCCCCcCccCcc-cCcccchHHHHhhhhhhhhhccchh
Q 038791 591 LDYWPAQDRDVNQRS-LTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 591 l~~~~~~~~~~n~~~-~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
..|.+. +.+|. .++.+++|+.|++.++..
T Consensus 245 ---------~~N~~~~~~~~~--~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 245 ---------RGNGFHCGTLRD--FFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp ---------TTCCCBHHHHHH--HHHTCHHHHHHHHHHHHH
T ss_pred ---------cCCCccCcCHHH--HHhccccceEEECCCchh
Confidence 336555 44444 377888888888876644
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.38 E-value=2.3e-13 Score=141.20 Aligned_cols=226 Identities=10% Similarity=0.009 Sum_probs=127.9
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
++|+.|+++++ .+++.. ...+.++++|++|+++++. ..+..+..++.+++|++|+++++. ++... ..
T Consensus 52 ~~l~~L~L~~n-~i~~~~---~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~----~~ 118 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIK---DGDFKNLKNLHTLILINNK----ISKISPGAFAPLVKLERLYLSKNQ-LKELP----EK 118 (330)
T ss_dssp TTCCEEECCSS-CCCCBC---TTTTTTCTTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSC-CSBCC----SS
T ss_pred CCCeEEECCCC-cCCEeC---hhhhccCCCCCEEECCCCc----CCeeCHHHhcCCCCCCEEECCCCc-CCccC----hh
Confidence 67999999884 566542 1234678999999998753 223345677888999999999875 54211 01
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhh
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESK 439 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~ 439 (683)
..++|++|++++|. ++......+.. + ++|+.|++++|.... ..........+++|+.|+++.+.++. ++.
T Consensus 119 ~~~~L~~L~l~~n~-l~~~~~~~~~~-l-~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~-----l~~- 188 (330)
T 1xku_A 119 MPKTLQELRVHENE-ITKVRKSVFNG-L-NQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITT-----IPQ- 188 (330)
T ss_dssp CCTTCCEEECCSSC-CCBBCHHHHTT-C-TTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSCCCS-----CCS-
T ss_pred hcccccEEECCCCc-ccccCHhHhcC-C-ccccEEECCCCcCCc-cCcChhhccCCCCcCEEECCCCcccc-----CCc-
Confidence 13689999998887 66544444433 4 889999998776531 11111123456889999888433321 000
Q ss_pred ccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceee
Q 038791 440 VRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIR 519 (683)
Q Consensus 440 ~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~ 519 (683)
...++|+.+.+..+. ++......+ ..+++|+.|+++ ++.+++.....+.++++|++|+
T Consensus 189 ---------------~~~~~L~~L~l~~n~---l~~~~~~~~-~~l~~L~~L~Ls---~n~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 189 ---------------GLPPSLTELHLDGNK---ITKVDAASL-KGLNNLAKLGLS---FNSISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp ---------------SCCTTCSEEECTTSC---CCEECTGGG-TTCTTCCEEECC---SSCCCEECTTTGGGSTTCCEEE
T ss_pred ---------------cccccCCEEECCCCc---CCccCHHHh-cCCCCCCEEECC---CCcCceeChhhccCCCCCCEEE
Confidence 001334444442221 111111111 125666666653 3555555554556666666666
Q ss_pred ecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 520 IKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 520 l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
++ +|....- +..+..+++|+.|+++.|.+.+
T Consensus 247 L~---~N~l~~l-------p~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 247 LN---NNKLVKV-------PGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CC---SSCCSSC-------CTTTTTCSSCCEEECCSSCCCC
T ss_pred CC---CCcCccC-------ChhhccCCCcCEEECCCCcCCc
Confidence 66 6521110 2345566666666666666554
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.34 E-value=2.4e-13 Score=141.15 Aligned_cols=240 Identities=15% Similarity=0.075 Sum_probs=132.9
Q ss_pred CCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhc
Q 038791 281 LLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRG 360 (683)
Q Consensus 281 ~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~ 360 (683)
+|+.++++++ .++... . .-.++|+.|+++++. .....+..++.+++|++|++++|. ++......+..
T Consensus 34 ~l~~l~~~~~-~l~~ip----~--~~~~~l~~L~l~~n~----i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~- 100 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVP----K--EISPDTTLLDLQNND----ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSP- 100 (332)
T ss_dssp ETTEEECCSS-CCSSCC----S--CCCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTT-
T ss_pred cCCEEECCCC-CccccC----C--CCCCCCeEEECCCCc----CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhC-
Confidence 5788888764 444321 1 114678888888743 222334567788888888888875 66543344443
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhc
Q 038791 361 CRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKV 440 (683)
Q Consensus 361 ~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~ 440 (683)
+++|++|++++|. ++... ....++|++|++++|....... .....+++|+.|+++.+.++..+... .
T Consensus 101 l~~L~~L~L~~n~-l~~l~-----~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~--~-- 167 (332)
T 2ft3_A 101 LRKLQKLYISKNH-LVEIP-----PNLPSSLVELRIHDNRIRKVPK---GVFSGLRNMNCIEMGGNPLENSGFEP--G-- 167 (332)
T ss_dssp CTTCCEEECCSSC-CCSCC-----SSCCTTCCEEECCSSCCCCCCS---GGGSSCSSCCEEECCSCCCBGGGSCT--T--
T ss_pred cCCCCEEECCCCc-CCccC-----ccccccCCEEECCCCccCccCH---hHhCCCccCCEEECCCCccccCCCCc--c--
Confidence 7888888888886 55211 1111678888888775432111 12235688888888855543211100 0
Q ss_pred cccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeee
Q 038791 441 RSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRI 520 (683)
Q Consensus 441 ~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l 520 (683)
.+..+ +|+.+.+..+. ++. .. ....++|+.|+++ ++.++......+.++++|+.|++
T Consensus 168 ------------~~~~l-~L~~L~l~~n~---l~~-l~---~~~~~~L~~L~l~---~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 168 ------------AFDGL-KLNYLRISEAK---LTG-IP---KDLPETLNELHLD---HNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp ------------SSCSC-CCSCCBCCSSB---CSS-CC---SSSCSSCSCCBCC---SSCCCCCCTTSSTTCTTCSCCBC
T ss_pred ------------cccCC-ccCEEECcCCC---CCc-cC---ccccCCCCEEECC---CCcCCccCHHHhcCCCCCCEEEC
Confidence 01111 34444442211 110 00 0113567777763 36666666666777777777777
Q ss_pred cccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhcc
Q 038791 521 KMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNG 582 (683)
Q Consensus 521 ~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~ 582 (683)
+ +|... ...+..+..+++|+.|+++.|.+. ..|..+.+++.|+.+++++
T Consensus 225 ~---~N~l~------~~~~~~~~~l~~L~~L~L~~N~l~----~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 225 G---HNQIR------MIENGSLSFLPTLRELHLDNNKLS----RVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp C---SSCCC------CCCTTGGGGCTTCCEEECCSSCCC----BCCTTGGGCTTCCEEECCS
T ss_pred C---CCcCC------cCChhHhhCCCCCCEEECCCCcCe----ecChhhhcCccCCEEECCC
Confidence 7 66211 222345667777777777777655 2355555555555554443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.33 E-value=1.4e-13 Score=149.43 Aligned_cols=84 Identities=23% Similarity=0.241 Sum_probs=36.6
Q ss_pred CCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHH
Q 038791 278 GLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAI 357 (683)
Q Consensus 278 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l 357 (683)
.+++|++|+++++ .+++.. . ...+++|+.|+++++. ..+..+..+..+++|++|+++++. ++......+
T Consensus 194 ~l~~L~~L~L~~n-~l~~~~----~-~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 262 (452)
T 3zyi_A 194 GLFNLKYLNLGMC-NIKDMP----N-LTPLVGLEELEMSGNH----FPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAF 262 (452)
T ss_dssp TCTTCCEEECTTS-CCSSCC----C-CTTCTTCCEEECTTSC----CSEECGGGGTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred CCCCCCEEECCCC-cccccc----c-ccccccccEEECcCCc----CcccCcccccCccCCCEEEeCCCc-CceECHHHh
Confidence 3555555555552 333211 1 2334555555555422 112223344455555555555543 333222222
Q ss_pred HhcCCCCcEEEecCCC
Q 038791 358 GRGCRRLIKFELEGCK 373 (683)
Q Consensus 358 ~~~~~~L~~L~L~~c~ 373 (683)
. .+++|+.|+|++|.
T Consensus 263 ~-~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 263 D-GLASLVELNLAHNN 277 (452)
T ss_dssp T-TCTTCCEEECCSSC
T ss_pred c-CCCCCCEEECCCCc
Confidence 2 24555555555554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.32 E-value=1.9e-13 Score=140.85 Aligned_cols=251 Identities=14% Similarity=0.070 Sum_probs=161.5
Q ss_pred HHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHh
Q 038791 226 TLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKS 305 (683)
Q Consensus 226 ~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~ 305 (683)
.+..+...+++|++|+++++. ++.. .+..+..+++|++|+++++ .+++.. . ..
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~--------------------l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~----~-~~ 77 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNP--------------------LSQI-SAADLAPFTKLELLNLSSN-VLYETL----D-LE 77 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSC--------------------CCCC-CHHHHTTCTTCCEEECTTS-CCEEEE----E-ET
T ss_pred hHHHHhccCCCCCEEECcCCc--------------------cCcC-CHHHhhCCCcCCEEECCCC-cCCcch----h-hh
Confidence 344555677899999998752 2221 1233567999999999984 565432 1 46
Q ss_pred cCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHH
Q 038791 306 KCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAA 385 (683)
Q Consensus 306 ~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~ 385 (683)
.+++|++|+++++. +..+...++|++|+++++. ++.... ..+++|+.|++++|. ++......+..
T Consensus 78 ~l~~L~~L~Ls~n~---------l~~l~~~~~L~~L~l~~n~-l~~~~~----~~~~~L~~L~l~~N~-l~~~~~~~~~~ 142 (317)
T 3o53_A 78 SLSTLRTLDLNNNY---------VQELLVGPSIETLHAANNN-ISRVSC----SRGQGKKNIYLANNK-ITMLRDLDEGC 142 (317)
T ss_dssp TCTTCCEEECCSSE---------EEEEEECTTCCEEECCSSC-CSEEEE----CCCSSCEEEECCSSC-CCSGGGBCTGG
T ss_pred hcCCCCEEECcCCc---------cccccCCCCcCEEECCCCc-cCCcCc----cccCCCCEEECCCCC-CCCccchhhhc
Confidence 78999999999742 2334456899999999975 654321 237889999999998 66643333333
Q ss_pred hcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccc
Q 038791 386 LRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCL 465 (683)
Q Consensus 386 ~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l 465 (683)
+ ++|++|++++|.... .. ...+...+++|+.|+++.+.++.
T Consensus 143 -l-~~L~~L~Ls~N~l~~-~~-~~~~~~~l~~L~~L~L~~N~l~~----------------------------------- 183 (317)
T 3o53_A 143 -R-SRVQYLDLKLNEIDT-VN-FAELAASSDTLEHLNLQYNFIYD----------------------------------- 183 (317)
T ss_dssp -G-SSEEEEECTTSCCCE-EE-GGGGGGGTTTCCEEECTTSCCCE-----------------------------------
T ss_pred -c-CCCCEEECCCCCCCc-cc-HHHHhhccCcCCEEECCCCcCcc-----------------------------------
Confidence 3 899999999886542 11 12233356889999998332210
Q ss_pred cCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccC
Q 038791 466 PEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRY 545 (683)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l 545 (683)
. ... ..+++|+.|+++ ++.++.++.. +..+++|++|+++ +|.-. .+ +..+..+
T Consensus 184 ---------~--~~~--~~l~~L~~L~Ls---~N~l~~l~~~-~~~l~~L~~L~L~---~N~l~------~l-~~~~~~l 236 (317)
T 3o53_A 184 ---------V--KGQ--VVFAKLKTLDLS---SNKLAFMGPE-FQSAAGVTWISLR---NNKLV------LI-EKALRFS 236 (317)
T ss_dssp ---------E--ECC--CCCTTCCEEECC---SSCCCEECGG-GGGGTTCSEEECT---TSCCC------EE-CTTCCCC
T ss_pred ---------c--ccc--cccccCCEEECC---CCcCCcchhh-hcccCcccEEECc---CCccc------ch-hhHhhcC
Confidence 0 000 126778888874 4677665543 6778888888888 77211 11 3456777
Q ss_pred cccccccccccccceeecccCCCCCCchhhHHHhhccccee
Q 038791 546 PQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNL 586 (683)
Q Consensus 546 ~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~~l 586 (683)
++|+.|+++.|.+... ..|..+..++.++.+.+.+...+
T Consensus 237 ~~L~~L~l~~N~~~~~--~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCG--TLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp TTCCEEECTTCCCBHH--HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCc--CHHHHHhccccceEEECCCchhc
Confidence 8888888888877621 23455666777777777654333
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=3.6e-13 Score=138.11 Aligned_cols=211 Identities=12% Similarity=0.037 Sum_probs=113.2
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
++|++|+++++ .++... .....++++|++|+++++.- ... +..+..+..+++|++|+++++. ++.. ...+ .
T Consensus 28 ~~l~~L~L~~n-~l~~i~---~~~~~~l~~L~~L~L~~n~l-~~~-~~~~~~~~~~~~L~~L~Ls~n~-i~~l-~~~~-~ 98 (306)
T 2z66_A 28 SSATRLELESN-KLQSLP---HGVFDKLTQLTKLSLSSNGL-SFK-GCCSQSDFGTTSLKYLDLSFNG-VITM-SSNF-L 98 (306)
T ss_dssp TTCCEEECCSS-CCCCCC---TTTTTTCTTCSEEECCSSCC-CEE-EEEEHHHHSCSCCCEEECCSCS-EEEE-EEEE-E
T ss_pred CCCCEEECCCC-ccCccC---HhHhhccccCCEEECCCCcc-Ccc-cCcccccccccccCEEECCCCc-cccC-hhhc-C
Confidence 57888888774 454322 12235677888888876432 110 1113344467778888887764 3321 0111 2
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhh
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESK 439 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~ 439 (683)
.+++|++|++++|. +++.........+ ++|++|++++|...... ......+++|+.|+++.+.++.
T Consensus 99 ~l~~L~~L~l~~n~-l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~--------- 164 (306)
T 2z66_A 99 GLEQLEHLDFQHSN-LKQMSEFSVFLSL-RNLIYLDISHTHTRVAF---NGIFNGLSSLEVLKMAGNSFQE--------- 164 (306)
T ss_dssp TCTTCCEEECTTSE-EESSTTTTTTTTC-TTCCEEECTTSCCEECS---TTTTTTCTTCCEEECTTCEEGG---------
T ss_pred CCCCCCEEECCCCc-ccccccchhhhhc-cCCCEEECCCCcCCccc---hhhcccCcCCCEEECCCCcccc---------
Confidence 36777777777765 3332221111223 67777777766533111 1112244667777776222100
Q ss_pred ccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceee
Q 038791 440 VRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIR 519 (683)
Q Consensus 440 ~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~ 519 (683)
......+ ..+++|+.|+++ ++.+++.....+.++++|++|+
T Consensus 165 -----------------------------------~~~~~~~-~~l~~L~~L~Ls---~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 165 -----------------------------------NFLPDIF-TELRNLTFLDLS---QCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp -----------------------------------GEECSCC-TTCTTCCEEECT---TSCCCEECTTTTTTCTTCCEEE
T ss_pred -----------------------------------ccchhHH-hhCcCCCEEECC---CCCcCCcCHHHhcCCCCCCEEE
Confidence 0001111 235677777763 4666666666677777777777
Q ss_pred ecccCCCCCCCCCCCccchhhhhccCccccccccccccccee
Q 038791 520 IKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGY 561 (683)
Q Consensus 520 l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~ 561 (683)
++ +|... ...+..+..+++|+.|+++.|.+.+.
T Consensus 206 L~---~N~l~------~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 206 MS---HNNFF------SLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CT---TSCCS------BCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CC---CCccC------ccChhhccCcccCCEeECCCCCCccc
Confidence 77 66321 22233466677777777777776653
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.31 E-value=8.9e-13 Score=138.11 Aligned_cols=258 Identities=15% Similarity=0.127 Sum_probs=140.2
Q ss_pred CCccEEEeccccccccCCCcccHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHH
Q 038791 115 PGLRHVKLVRWHQRLQAPLGAEFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQE 194 (683)
Q Consensus 115 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~ 194 (683)
++|++|+++++... ......+..+++|++|++++|.+. +..+..+..+ ++|++|+|++|.. ..+..
T Consensus 52 ~~L~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l----~~L~~L~Ls~n~l-~~~~~-- 117 (353)
T 2z80_A 52 EAVKSLDLSNNRIT------YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSL----GSLEHLDLSYNYL-SNLSS-- 117 (353)
T ss_dssp TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTC----TTCCEEECCSSCC-SSCCH--
T ss_pred ccCcEEECCCCcCc------ccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCC----CCCCEEECCCCcC-CcCCH--
Confidence 46788888765422 111224567788888888877652 2222223333 4888888886642 22322
Q ss_pred HHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHH
Q 038791 195 IREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQ 274 (683)
Q Consensus 195 l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~ 274 (683)
..+..+++|++|+++. +.++.-........+++|++|+++++..++... +.
T Consensus 118 --~~~~~l~~L~~L~L~~-------n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--------------------~~ 168 (353)
T 2z80_A 118 --SWFKPLSSLTFLNLLG-------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--------------------RK 168 (353)
T ss_dssp --HHHTTCTTCSEEECTT-------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--------------------TT
T ss_pred --hHhCCCccCCEEECCC-------CCCcccCchhhhccCCCCcEEECCCCccccccC--------------------HH
Confidence 2245678888888831 122210000122467788888887653332211 01
Q ss_pred HHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHH
Q 038791 275 LFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGL 354 (683)
Q Consensus 275 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l 354 (683)
.+..+++|++|+++++ .++.. .+.....+++|++|+++++.- . ......+..+++|++|+++++. +++...
T Consensus 169 ~~~~l~~L~~L~l~~n-~l~~~---~~~~l~~l~~L~~L~l~~n~l-~---~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 239 (353)
T 2z80_A 169 DFAGLTFLEELEIDAS-DLQSY---EPKSLKSIQNVSHLILHMKQH-I---LLLEIFVDVTSSVECLELRDTD-LDTFHF 239 (353)
T ss_dssp TTTTCCEEEEEEEEET-TCCEE---CTTTTTTCSEEEEEEEECSCS-T---THHHHHHHHTTTEEEEEEESCB-CTTCCC
T ss_pred HccCCCCCCEEECCCC-CcCcc---CHHHHhccccCCeecCCCCcc-c---cchhhhhhhcccccEEECCCCc-cccccc
Confidence 1345677888888774 44432 122335577788888776432 1 1111223356778888887764 443221
Q ss_pred HHH--HhcCCCCcEEEecCCCCCCHHHHHHHH---HhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCC
Q 038791 355 VAI--GRGCRRLIKFELEGCKNVTVDGLRTMA---ALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDG 429 (683)
Q Consensus 355 ~~l--~~~~~~L~~L~L~~c~~it~~~l~~l~---~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~ 429 (683)
..+ ...++.++.++++++. +++.++..+. ..+ ++|++|++++|... ..+ ..+...+++|+.|+++.+...
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l-~~L~~L~Ls~N~l~-~i~--~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQI-SGLLELEFSRNQLK-SVP--DGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp C------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTC-TTCCEEECCSSCCC-CCC--TTTTTTCTTCCEEECCSSCBC
T ss_pred cccccccccchhhcccccccc-ccCcchhhhHHHHhcc-cCCCEEECCCCCCC-ccC--HHHHhcCCCCCEEEeeCCCcc
Confidence 111 2336678888888776 7776655443 234 78888888877543 211 011235678888888755444
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=1.2e-13 Score=151.05 Aligned_cols=240 Identities=10% Similarity=-0.027 Sum_probs=150.5
Q ss_pred hCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHH
Q 038791 277 SGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVA 356 (683)
Q Consensus 277 ~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~ 356 (683)
..+++|++|+|+++ .+++.. +..+..+++|++|+|+++.- + +. ..++.+++|++|++++|. +++.
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~---~~~~~~l~~L~~L~Ls~N~l-~---~~--~~l~~l~~L~~L~Ls~N~-l~~l---- 95 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQIS---AADLAPFTKLELLNLSSNVL-Y---ET--LDLESLSTLRTLDLNNNY-VQEL---- 95 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCC---GGGGTTCTTCCEEECTTSCC-E---EE--EECTTCTTCCEEECCSSE-EEEE----
T ss_pred ccCCCccEEEeeCC-cCCCCC---HHHHhCCCCCCEEEeeCCCC-C---CC--cccccCCCCCEEEecCCc-CCCC----
Confidence 34458999999984 666542 23346789999999998542 1 11 227788999999999875 5431
Q ss_pred HHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHH
Q 038791 357 IGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESS 436 (683)
Q Consensus 357 l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~ 436 (683)
. ..++|+.|++++|. +++.... .+ ++|+.|++++|...+..+ .....+++|+.|+++.+.+
T Consensus 96 -~-~~~~L~~L~L~~N~-l~~~~~~----~l-~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l-------- 156 (487)
T 3oja_A 96 -L-VGPSIETLHAANNN-ISRVSCS----RG-QGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEI-------- 156 (487)
T ss_dssp -E-ECTTCCEEECCSSC-CCCEEEC----CC-SSCEEEECCSSCCCSGGG---BCGGGGSSEEEEECTTSCC--------
T ss_pred -C-CCCCcCEEECcCCc-CCCCCcc----cc-CCCCEEECCCCCCCCCCc---hhhcCCCCCCEEECCCCCC--------
Confidence 1 24789999998887 5543221 23 788888888776543211 1123457788887772221
Q ss_pred hhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcc
Q 038791 437 ESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLE 516 (683)
Q Consensus 437 ~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~ 516 (683)
++..+..++..+++|+.|+++ +|.+++.+ ....+++|+
T Consensus 157 -------------------------------------~~~~~~~l~~~l~~L~~L~Ls---~N~l~~~~--~~~~l~~L~ 194 (487)
T 3oja_A 157 -------------------------------------DTVNFAELAASSDTLEHLNLQ---YNFIYDVK--GQVVFAKLK 194 (487)
T ss_dssp -------------------------------------CEEEGGGGGGGTTTCCEEECT---TSCCCEEE--CCCCCTTCC
T ss_pred -------------------------------------CCcChHHHhhhCCcccEEecC---CCcccccc--ccccCCCCC
Confidence 111122222247889999974 47776653 345689999
Q ss_pred eeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhcccceeeeccccCCCC
Q 038791 517 EIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPA 596 (683)
Q Consensus 517 ~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~ 596 (683)
.|+++ +|... .+ +..+..+++|+.|+++.|.+.+. |..+..++.++. ++
T Consensus 195 ~L~Ls---~N~l~------~~-~~~~~~l~~L~~L~Ls~N~l~~l----p~~l~~l~~L~~-------------L~---- 243 (487)
T 3oja_A 195 TLDLS---SNKLA------FM-GPEFQSAAGVTWISLRNNKLVLI----EKALRFSQNLEH-------------FD---- 243 (487)
T ss_dssp EEECC---SSCCC------EE-CGGGGGGTTCSEEECTTSCCCEE----CTTCCCCTTCCE-------------EE----
T ss_pred EEECC---CCCCC------CC-CHhHcCCCCccEEEecCCcCccc----chhhccCCCCCE-------------EE----
Confidence 99999 77311 11 34478889999999999988862 544544443322 22
Q ss_pred CCcCccCcc-cCcccchHHHHhhhhhhhhhcc
Q 038791 597 QDRDVNQRS-LTLPASGLIAQCLTLRKLIIHG 627 (683)
Q Consensus 597 ~~~~~n~~~-~~~p~~~~l~~~~~L~~l~~~~ 627 (683)
+..|.+. +.+|.. ++.++.|+.+++.+
T Consensus 244 --l~~N~l~c~~~~~~--~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 244 --LRGNGFHCGTLRDF--FSKNQRVQTVAKQT 271 (487)
T ss_dssp --CTTCCBCHHHHHHH--HTTCHHHHHHHHHH
T ss_pred --cCCCCCcCcchHHH--HHhCCCCcEEeccc
Confidence 2335555 444443 77788888887753
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=5.4e-13 Score=145.85 Aligned_cols=217 Identities=14% Similarity=0.051 Sum_probs=130.8
Q ss_pred HhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHH
Q 038791 276 FSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLV 355 (683)
Q Consensus 276 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~ 355 (683)
+..+++|++|+|++| .+++.. + +..+++|++|+++++. +..+...++|++|++++|. +++...
T Consensus 54 ~~~l~~L~~L~Ls~N-~l~~~~---~--l~~l~~L~~L~Ls~N~---------l~~l~~~~~L~~L~L~~N~-l~~~~~- 116 (487)
T 3oja_A 54 LAPFTKLELLNLSSN-VLYETL---D--LESLSTLRTLDLNNNY---------VQELLVGPSIETLHAANNN-ISRVSC- 116 (487)
T ss_dssp GTTCTTCCEEECTTS-CCEEEE---E--CTTCTTCCEEECCSSE---------EEEEEECTTCCEEECCSSC-CCCEEE-
T ss_pred HhCCCCCCEEEeeCC-CCCCCc---c--cccCCCCCEEEecCCc---------CCCCCCCCCcCEEECcCCc-CCCCCc-
Confidence 456788888888874 554432 1 4567888888888642 1233345788888888875 554322
Q ss_pred HHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHH
Q 038791 356 AIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTES 435 (683)
Q Consensus 356 ~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~ 435 (683)
..+++|+.|++++|. +++.....+.. + ++|+.|++++|...+.. ...+...+++|+.|+|+.+.++
T Consensus 117 ---~~l~~L~~L~L~~N~-l~~~~~~~~~~-l-~~L~~L~Ls~N~l~~~~--~~~l~~~l~~L~~L~Ls~N~l~------ 182 (487)
T 3oja_A 117 ---SRGQGKKNIYLANNK-ITMLRDLDEGC-R-SRVQYLDLKLNEIDTVN--FAELAASSDTLEHLNLQYNFIY------ 182 (487)
T ss_dssp ---CCCSSCEEEECCSSC-CCSGGGBCGGG-G-SSEEEEECTTSCCCEEE--GGGGGGGTTTCCEEECTTSCCC------
T ss_pred ---cccCCCCEEECCCCC-CCCCCchhhcC-C-CCCCEEECCCCCCCCcC--hHHHhhhCCcccEEecCCCccc------
Confidence 236778888888887 66543333333 3 78888888877543211 1122334677888888722210
Q ss_pred HhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCc
Q 038791 436 SESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVL 515 (683)
Q Consensus 436 ~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L 515 (683)
+. ... ..+++|+.|+++ +|.+++++.. +.++++|
T Consensus 183 ---------------------------------------~~-~~~--~~l~~L~~L~Ls---~N~l~~~~~~-~~~l~~L 216 (487)
T 3oja_A 183 ---------------------------------------DV-KGQ--VVFAKLKTLDLS---SNKLAFMGPE-FQSAAGV 216 (487)
T ss_dssp ---------------------------------------EE-ECC--CCCTTCCEEECC---SSCCCEECGG-GGGGTTC
T ss_pred ---------------------------------------cc-ccc--ccCCCCCEEECC---CCCCCCCCHh-HcCCCCc
Confidence 00 001 126788888874 4677765544 6778888
Q ss_pred ceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhc
Q 038791 516 EEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFN 581 (683)
Q Consensus 516 ~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~ 581 (683)
+.|+++ +|... .+ +..+..+++|+.|+++.|.+... ..|..+..++.+..+.+.
T Consensus 217 ~~L~Ls---~N~l~------~l-p~~l~~l~~L~~L~l~~N~l~c~--~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 217 TWISLR---NNKLV------LI-EKALRFSQNLEHFDLRGNGFHCG--TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SEEECT---TSCCC------EE-CTTCCCCTTCCEEECTTCCBCHH--HHHHHHTTCHHHHHHHHH
T ss_pred cEEEec---CCcCc------cc-chhhccCCCCCEEEcCCCCCcCc--chHHHHHhCCCCcEEecc
Confidence 888888 77211 11 44567778888888888776621 224445556666555554
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.29 E-value=1.2e-13 Score=143.44 Aligned_cols=278 Identities=10% Similarity=-0.021 Sum_probs=164.9
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
.++|+.|+++++ .++... .....++++|++|+++++. .....+..++.+++|++|+++++. ++... .
T Consensus 53 ~~~l~~L~l~~n-~i~~~~---~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~-~--- 119 (332)
T 2ft3_A 53 SPDTTLLDLQNN-DISELR---KDDFKGLQHLYALVLVNNK----ISKIHEKAFSPLRKLQKLYISKNH-LVEIP-P--- 119 (332)
T ss_dssp CTTCCEEECCSS-CCCEEC---TTTTTTCTTCCEEECCSSC----CCEECGGGSTTCTTCCEEECCSSC-CCSCC-S---
T ss_pred CCCCeEEECCCC-cCCccC---HhHhhCCCCCcEEECCCCc----cCccCHhHhhCcCCCCEEECCCCc-CCccC-c---
Confidence 368999999984 565431 2234678999999999853 223445678899999999999875 55211 0
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhh
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSES 438 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~ 438 (683)
...++|++|++++|. ++......+. .+ ++|++|++++|....... ........ +|+.|+++.+.++. ++.
T Consensus 120 ~~~~~L~~L~l~~n~-i~~~~~~~~~-~l-~~L~~L~l~~n~l~~~~~-~~~~~~~l-~L~~L~l~~n~l~~-----l~~ 189 (332)
T 2ft3_A 120 NLPSSLVELRIHDNR-IRKVPKGVFS-GL-RNMNCIEMGGNPLENSGF-EPGAFDGL-KLNYLRISEAKLTG-----IPK 189 (332)
T ss_dssp SCCTTCCEEECCSSC-CCCCCSGGGS-SC-SSCCEEECCSCCCBGGGS-CTTSSCSC-CCSCCBCCSSBCSS-----CCS
T ss_pred cccccCCEEECCCCc-cCccCHhHhC-CC-ccCCEEECCCCccccCCC-CcccccCC-ccCEEECcCCCCCc-----cCc
Confidence 113789999999987 6643322232 34 899999999886531110 01111122 78888888444321 000
Q ss_pred hccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCccee
Q 038791 439 KVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEI 518 (683)
Q Consensus 439 ~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L 518 (683)
. ..++|+.+.+..+. ++......+ ..+++|+.|+++ ++.+++.....+..+++|++|
T Consensus 190 ~----------------~~~~L~~L~l~~n~---i~~~~~~~l-~~l~~L~~L~L~---~N~l~~~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 190 D----------------LPETLNELHLDHNK---IQAIELEDL-LRYSKLYRLGLG---HNQIRMIENGSLSFLPTLREL 246 (332)
T ss_dssp S----------------SCSSCSCCBCCSSC---CCCCCTTSS-TTCTTCSCCBCC---SSCCCCCCTTGGGGCTTCCEE
T ss_pred c----------------ccCCCCEEECCCCc---CCccCHHHh-cCCCCCCEEECC---CCcCCcCChhHhhCCCCCCEE
Confidence 0 01356666553322 222221112 237899999974 478888777778899999999
Q ss_pred eecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecccCCCCCCchhhHHHhhcccceeeeccccCCCCCC
Q 038791 519 RIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQD 598 (683)
Q Consensus 519 ~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~ 598 (683)
+++ +|.-.. + +..+..+++|+.|+++.|.+++.. +..+.+... .....++..+++
T Consensus 247 ~L~---~N~l~~------l-p~~l~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~-------~~~~~~l~~L~l----- 301 (332)
T 2ft3_A 247 HLD---NNKLSR------V-PAGLPDLKLLQVVYLHTNNITKVG---VNDFCPVGF-------GVKRAYYNGISL----- 301 (332)
T ss_dssp ECC---SSCCCB------C-CTTGGGCTTCCEEECCSSCCCBCC---TTSSSCSSC-------CSSSCCBSEEEC-----
T ss_pred ECC---CCcCee------c-ChhhhcCccCCEEECCCCCCCccC---hhHcccccc-------ccccccccceEe-----
Confidence 999 883211 1 445788999999999999887643 222222110 000112333432
Q ss_pred cCccCccc-CcccchHHHHhhhhhhhhhccch
Q 038791 599 RDVNQRSL-TLPASGLIAQCLTLRKLIIHGTA 629 (683)
Q Consensus 599 ~~~n~~~~-~~p~~~~l~~~~~L~~l~~~~~~ 629 (683)
..|.... .+++ ..+..+++|+.+++.++.
T Consensus 302 -~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 -FNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -CSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred -ecCcccccccCc-ccccccchhhhhhccccc
Confidence 2344431 2333 347788889999888774
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.29 E-value=4.9e-13 Score=145.11 Aligned_cols=228 Identities=13% Similarity=0.045 Sum_probs=130.5
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
++|++|+|++ ++++... ...+.++++|+.|+++++. ..+..+..+..+++|++|+|+++. ++......+ .
T Consensus 75 ~~l~~L~L~~-n~i~~~~---~~~~~~l~~L~~L~Ls~n~----i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~ 144 (452)
T 3zyi_A 75 SNTRYLNLME-NNIQMIQ---ADTFRHLHHLEVLQLGRNS----IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF-E 144 (452)
T ss_dssp TTCSEEECCS-SCCCEEC---TTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS-S
T ss_pred CCccEEECcC-CcCceEC---HHHcCCCCCCCEEECCCCc----cCCcChhhccCcccCCEEECCCCc-CCccChhhh-c
Confidence 5799999988 4565431 2234678999999998742 223344667788999999999875 554322223 3
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhh
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESK 439 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~ 439 (683)
.+++|++|++++|. ++......+. .+ ++|+.|++++|+.++.... .....+++|+.|+++.+.++.
T Consensus 145 ~l~~L~~L~L~~N~-l~~~~~~~~~-~l-~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~l~~--------- 210 (452)
T 3zyi_A 145 YLSKLRELWLRNNP-IESIPSYAFN-RV-PSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMCNIKD--------- 210 (452)
T ss_dssp SCTTCCEEECCSCC-CCEECTTTTT-TC-TTCCEEECCCCTTCCEECT--TTTTTCTTCCEEECTTSCCSS---------
T ss_pred ccCCCCEEECCCCC-cceeCHhHHh-cC-CcccEEeCCCCCCccccCh--hhccCCCCCCEEECCCCcccc---------
Confidence 48899999999987 6543222232 34 8999999998877754321 122356889999988433221
Q ss_pred ccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceee
Q 038791 440 VRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIR 519 (683)
Q Consensus 440 ~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~ 519 (683)
...+..+++|+.+.+..+. ++......+ ..+++|+.|++ .++.++.+....+.++++|++|+
T Consensus 211 -----------~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~-~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 211 -----------MPNLTPLVGLEELEMSGNH---FPEIRPGSF-HGLSSLKKLWV---MNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp -----------CCCCTTCTTCCEEECTTSC---CSEECGGGG-TTCTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEE
T ss_pred -----------cccccccccccEEECcCCc---CcccCcccc-cCccCCCEEEe---CCCcCceECHHHhcCCCCCCEEE
Confidence 0112234445555443222 111111111 12556666665 23555555555566666666666
Q ss_pred ecccCCCCCCCCCCCccchhhhhccCccccccccccccc
Q 038791 520 IKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGET 558 (683)
Q Consensus 520 l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 558 (683)
++ +|+.. .+....+..+++|+.|+|+.|.+
T Consensus 273 L~---~N~l~------~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 273 LA---HNNLS------SLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CC---SSCCS------CCCTTSSTTCTTCCEEECCSSCE
T ss_pred CC---CCcCC------ccChHHhccccCCCEEEccCCCc
Confidence 66 55211 12233345566666666665543
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.28 E-value=5.2e-13 Score=144.36 Aligned_cols=229 Identities=13% Similarity=0.054 Sum_probs=131.5
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
++++.|+|++ ++++... ...+.++++|+.|+|+++. ........+..+++|++|+|+++. ++......+ .
T Consensus 64 ~~l~~L~L~~-n~i~~~~---~~~~~~l~~L~~L~Ls~n~----i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~ 133 (440)
T 3zyj_A 64 TNTRLLNLHE-NQIQIIK---VNSFKHLRHLEILQLSRNH----IRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAF-V 133 (440)
T ss_dssp TTCSEEECCS-CCCCEEC---TTTTSSCSSCCEEECCSSC----CCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTS-C
T ss_pred CCCcEEEccC-CcCCeeC---HHHhhCCCCCCEEECCCCc----CCccChhhccCCccCCEEECCCCc-CCeeCHhHh-h
Confidence 5788999988 4555432 1233678899999998743 222344567788999999999874 554322223 3
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhh
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESK 439 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~ 439 (683)
.+++|++|++++|. ++......+. .+ ++|++|++++|+.++.... .....+++|+.|+++.+.++.
T Consensus 134 ~l~~L~~L~L~~N~-i~~~~~~~~~-~l-~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~l~~--------- 199 (440)
T 3zyj_A 134 YLSKLKELWLRNNP-IESIPSYAFN-RI-PSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLRE--------- 199 (440)
T ss_dssp SCSSCCEEECCSCC-CCEECTTTTT-TC-TTCCEEECCCCTTCCEECT--TTTTTCSSCCEEECTTSCCSS---------
T ss_pred ccccCceeeCCCCc-ccccCHHHhh-hC-cccCEeCCCCCCCcceeCc--chhhcccccCeecCCCCcCcc---------
Confidence 47889999998887 5543222222 34 8899999998776653221 122356888988888333220
Q ss_pred ccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceee
Q 038791 440 VRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIR 519 (683)
Q Consensus 440 ~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~ 519 (683)
+..+..+++|+.+.+..+. ++......+ ..+++|+.|++ .++.++.+....+.++++|++|+
T Consensus 200 -----------~~~~~~l~~L~~L~Ls~N~---l~~~~~~~~-~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 200 -----------IPNLTPLIKLDELDLSGNH---LSAIRPGSF-QGLMHLQKLWM---IQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp -----------CCCCTTCSSCCEEECTTSC---CCEECTTTT-TTCTTCCEEEC---TTCCCCEECTTSSTTCTTCCEEE
T ss_pred -----------ccccCCCcccCEEECCCCc---cCccChhhh-ccCccCCEEEC---CCCceeEEChhhhcCCCCCCEEE
Confidence 0112334455555543222 111111111 12566666665 33566666555566667777777
Q ss_pred ecccCCCCCCCCCCCccchhhhhccCcccccccccccccc
Q 038791 520 IKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETI 559 (683)
Q Consensus 520 l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 559 (683)
|+ +|+.. .+.+..+..+++|+.|+|+.|.+.
T Consensus 262 L~---~N~l~------~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 262 LA---HNNLT------LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CT---TSCCC------CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CC---CCCCC------ccChhHhccccCCCEEEcCCCCcc
Confidence 76 55211 222334556666777776666543
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.27 E-value=2.4e-13 Score=139.39 Aligned_cols=215 Identities=15% Similarity=0.032 Sum_probs=141.7
Q ss_pred HhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHH
Q 038791 276 FSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLV 355 (683)
Q Consensus 276 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~ 355 (683)
+..+++|++|+++++ .++..+. .......+++|++|+++++.- ...+..+..+++|++|+++++. ++.....
T Consensus 48 ~~~l~~L~~L~L~~n-~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i-----~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~ 119 (306)
T 2z66_A 48 FDKLTQLTKLSLSSN-GLSFKGC-CSQSDFGTTSLKYLDLSFNGV-----ITMSSNFLGLEQLEHLDFQHSN-LKQMSEF 119 (306)
T ss_dssp TTTCTTCSEEECCSS-CCCEEEE-EEHHHHSCSCCCEEECCSCSE-----EEEEEEEETCTTCCEEECTTSE-EESSTTT
T ss_pred hhccccCCEEECCCC-ccCcccC-cccccccccccCEEECCCCcc-----ccChhhcCCCCCCCEEECCCCc-ccccccc
Confidence 457899999999984 6654321 112234689999999998532 1344557789999999999874 4443221
Q ss_pred HHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHH
Q 038791 356 AIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTES 435 (683)
Q Consensus 356 ~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~ 435 (683)
.....+++|++|++++|. ++......+. .+ ++|++|++++|...+. .++.....+++|+.|+++.+.++
T Consensus 120 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l-~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~------ 188 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTH-TRVAFNGIFN-GL-SSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLE------ 188 (306)
T ss_dssp TTTTTCTTCCEEECTTSC-CEECSTTTTT-TC-TTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSCCC------
T ss_pred hhhhhccCCCEEECCCCc-CCccchhhcc-cC-cCCCEEECCCCccccc--cchhHHhhCcCCCEEECCCCCcC------
Confidence 223348999999999997 5543322232 34 8999999998865320 01112345688999999833221
Q ss_pred HhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCc
Q 038791 436 SESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVL 515 (683)
Q Consensus 436 ~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L 515 (683)
......+ ..+++|+.|++ .++.+++.....+.++++|
T Consensus 189 ---------------------------------------~~~~~~~-~~l~~L~~L~L---~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 189 ---------------------------------------QLSPTAF-NSLSSLQVLNM---SHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp ---------------------------------------EECTTTT-TTCTTCCEEEC---TTSCCSBCCSGGGTTCTTC
T ss_pred ---------------------------------------CcCHHHh-cCCCCCCEEEC---CCCccCccChhhccCcccC
Confidence 0101111 23678999997 4577777776668889999
Q ss_pred ceeeecccCCCCCCCCCCCccchhhhhccCc-cccccccccccccee
Q 038791 516 EEIRIKMEGDSRGRQKPSDRAFGLSCLTRYP-QLTKLRLEFGETIGY 561 (683)
Q Consensus 516 ~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~g~ 561 (683)
+.|+++ +|... ...+..+..++ +|+.|+++.|.+.+.
T Consensus 226 ~~L~L~---~N~l~------~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 226 QVLDYS---LNHIM------TSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CEEECT---TSCCC------BCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CEeECC---CCCCc------ccCHHHHHhhhccCCEEEccCCCeecc
Confidence 999999 88322 22345567774 899999999887763
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=141.80 Aligned_cols=228 Identities=14% Similarity=0.117 Sum_probs=140.2
Q ss_pred CCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHh
Q 038791 307 CSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAAL 386 (683)
Q Consensus 307 ~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~ 386 (683)
.++++.|+|+++. ........+..+++|++|+|+++. ++......+.. +++|++|+|++|. ++......+. .
T Consensus 63 ~~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~-l~~L~~L~L~~n~-l~~~~~~~~~-~ 134 (440)
T 3zyj_A 63 STNTRLLNLHENQ----IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNG-LANLNTLELFDNR-LTTIPNGAFV-Y 134 (440)
T ss_dssp CTTCSEEECCSCC----CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTT-CSSCCEEECCSSC-CSSCCTTTSC-S
T ss_pred CCCCcEEEccCCc----CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccC-CccCCEEECCCCc-CCeeCHhHhh-c
Confidence 3689999998743 223344667889999999999875 66544444444 8999999999987 6643222222 2
Q ss_pred cccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhcccccc
Q 038791 387 RRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLP 466 (683)
Q Consensus 387 ~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~ 466 (683)
+ ++|++|++++|... ... ......+++|+.|+++.+.. +..+
T Consensus 135 l-~~L~~L~L~~N~i~-~~~--~~~~~~l~~L~~L~l~~~~~-------------------------------l~~i--- 176 (440)
T 3zyj_A 135 L-SKLKELWLRNNPIE-SIP--SYAFNRIPSLRRLDLGELKR-------------------------------LSYI--- 176 (440)
T ss_dssp C-SSCCEEECCSCCCC-EEC--TTTTTTCTTCCEEECCCCTT-------------------------------CCEE---
T ss_pred c-ccCceeeCCCCccc-ccC--HHHhhhCcccCEeCCCCCCC-------------------------------ccee---
Confidence 4 88999999977543 211 11223568888888872110 0000
Q ss_pred CCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCc
Q 038791 467 EGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYP 546 (683)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~ 546 (683)
....+ ..+++|+.|+++ ++.++.++ .+..+++|++|+++ +|... .+.+..+..++
T Consensus 177 ---------~~~~~--~~l~~L~~L~L~---~n~l~~~~--~~~~l~~L~~L~Ls---~N~l~------~~~~~~~~~l~ 231 (440)
T 3zyj_A 177 ---------SEGAF--EGLSNLRYLNLA---MCNLREIP--NLTPLIKLDELDLS---GNHLS------AIRPGSFQGLM 231 (440)
T ss_dssp ---------CTTTT--TTCSSCCEEECT---TSCCSSCC--CCTTCSSCCEEECT---TSCCC------EECTTTTTTCT
T ss_pred ---------Ccchh--hcccccCeecCC---CCcCcccc--ccCCCcccCEEECC---CCccC------ccChhhhccCc
Confidence 00011 236788888863 46666543 47778888888888 77211 33356777888
Q ss_pred ccccccccccccceeecccCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhc
Q 038791 547 QLTKLRLEFGETIGYALTAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIH 626 (683)
Q Consensus 547 ~L~~L~l~~~~~~g~~~~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~ 626 (683)
+|++|+++.|.+.+.. |..+.+++.|+.+++ ..|+++. +|. ..++.+++|+.|+++
T Consensus 232 ~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L-------------------~~N~l~~-~~~-~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 232 HLQKLWMIQSQIQVIE---RNAFDNLQSLVEINL-------------------AHNNLTL-LPH-DLFTPLHHLERIHLH 287 (440)
T ss_dssp TCCEEECTTCCCCEEC---TTSSTTCTTCCEEEC-------------------TTSCCCC-CCT-TTTSSCTTCCEEECC
T ss_pred cCCEEECCCCceeEEC---hhhhcCCCCCCEEEC-------------------CCCCCCc-cCh-hHhccccCCCEEEcC
Confidence 8888888888777643 344444443333222 3355553 333 236777888888888
Q ss_pred cch
Q 038791 627 GTA 629 (683)
Q Consensus 627 ~~~ 629 (683)
+|.
T Consensus 288 ~Np 290 (440)
T 3zyj_A 288 HNP 290 (440)
T ss_dssp SSC
T ss_pred CCC
Confidence 876
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.26 E-value=2.5e-13 Score=139.73 Aligned_cols=211 Identities=19% Similarity=0.187 Sum_probs=125.8
Q ss_pred cCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHh-hCCCCceEEeceecCCCCccc
Q 038791 143 HCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITA-ACPSLNKLLVACTFDPRYIGF 221 (683)
Q Consensus 143 ~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~-~~~~L~~L~L~c~~~~~~~~~ 221 (683)
.+++|++|++++|.+. +.+|..+ +...+++|++|+|++|... ++ ...+..+.. ..++|++|+++. +.
T Consensus 93 ~l~~L~~L~L~~n~l~-~~~~~~~--~~~~l~~L~~L~Ls~N~l~-~~-~~~~~~l~~~~~~~L~~L~L~~-------N~ 160 (312)
T 1wwl_A 93 GISGLQELTLENLEVT-GTAPPPL--LEATGPDLNILNLRNVSWA-TR-DAWLAELQQWLKPGLKVLSIAQ-------AH 160 (312)
T ss_dssp TTSCCCEEEEEEEBCB-SCCCCCS--SSCCSCCCSEEEEESCBCS-SS-SSHHHHHHTTCCTTCCEEEEES-------CS
T ss_pred CcCCccEEEccCCccc-chhHHHH--HHhcCCCccEEEccCCCCc-ch-hHHHHHHHHhhcCCCcEEEeeC-------CC
Confidence 6889999999998763 3333322 1123459999999987622 22 122322211 138899999931 23
Q ss_pred cCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCH-HHHHHHH--hCCCCCcEEEeccccCcCCChh
Q 038791 222 VNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSR-EGLIQLF--SGLPLLEELVLDVCKNVRDSGP 298 (683)
Q Consensus 222 l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~-~~l~~l~--~~~~~L~~L~L~~c~~l~~~~~ 298 (683)
++......+ ..+++|++|+++++ .++. .++.... ..+++|++|+++++ .++..+.
T Consensus 161 l~~~~~~~~-~~l~~L~~L~Ls~N--------------------~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 218 (312)
T 1wwl_A 161 SLNFSCEQV-RVFPALSTLDLSDN--------------------PELGERGLISALCPLKFPTLQVLALRNA-GMETPSG 218 (312)
T ss_dssp CCCCCTTTC-CCCSSCCEEECCSC--------------------TTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHH
T ss_pred CccchHHHh-ccCCCCCEEECCCC--------------------CcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHH
Confidence 332222222 37889999999864 3333 2233333 67899999999884 6664322
Q ss_pred HHHHHHhcCCCCcEEEecCccccccccccc-ccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCH
Q 038791 299 VLEVLKSKCSSLKVLKLGQFHGVCLAIGWQ-LDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTV 377 (683)
Q Consensus 299 ~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~-~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~ 377 (683)
....+...+++|+.|+++++.- .+.. ...+..+++|++|++++|. ++. ....+ .++|++|++++|. +++
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-ip~~~---~~~L~~L~Ls~N~-l~~ 288 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNSL----RDAAGAPSCDWPSQLNSLNLSFTG-LKQ-VPKGL---PAKLSVLDLSYNR-LDR 288 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSCC----CSSCCCSCCCCCTTCCEEECTTSC-CSS-CCSSC---CSEEEEEECCSSC-CCS
T ss_pred HHHHHHhcCCCCCEEECCCCcC----CcccchhhhhhcCCCCEEECCCCc-cCh-hhhhc---cCCceEEECCCCC-CCC
Confidence 2334556788999999987432 1222 2334457889999998875 551 11111 1578888888887 665
Q ss_pred HHHHHHHHhcccCccEEEeecccc
Q 038791 378 DGLRTMAALRRETLVEMKISCCKQ 401 (683)
Q Consensus 378 ~~l~~l~~~~~~~L~~L~l~~c~~ 401 (683)
. ..+ ..+ ++|++|++++++.
T Consensus 289 ~--p~~-~~l-~~L~~L~L~~N~l 308 (312)
T 1wwl_A 289 N--PSP-DEL-PQVGNLSLKGNPF 308 (312)
T ss_dssp C--CCT-TTS-CEEEEEECTTCTT
T ss_pred C--hhH-hhC-CCCCEEeccCCCC
Confidence 4 222 234 7788888887654
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.26 E-value=4.7e-12 Score=141.51 Aligned_cols=59 Identities=22% Similarity=0.136 Sum_probs=29.6
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+++|+.|+++ +|.++.++. .+++|+.|+++ +|... .+ +..+.++++|+.|+|+.|.+.|
T Consensus 240 l~~L~~L~Ls---~N~L~~lp~----~~~~L~~L~Ls---~N~L~------~l-p~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 240 PSELKELMVS---GNRLTSLPM----LPSGLLSLSVY---RNQLT------RL-PESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CTTCCEEECC---SSCCSCCCC----CCTTCCEEECC---SSCCC------SC-CGGGGGSCTTCEEECCSCCCCH
T ss_pred CCcCcEEECC---CCCCCcCCc----ccccCcEEeCC---CCCCC------cC-CHHHhhccccCEEEecCCCCCC
Confidence 3455665542 244444332 34556666666 55211 11 3345556666666666665554
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.26 E-value=2e-12 Score=131.08 Aligned_cols=209 Identities=12% Similarity=0.049 Sum_probs=140.3
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
.++|++|++++ +.++... ...+..+++|++|+++++. ..+..+..++.+++|++|+++++..++......+.
T Consensus 31 ~~~l~~L~l~~-n~i~~~~---~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 31 PAASQRIFLHG-NRISHVP---AASFRACRNLTILWLHSNV----LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CTTCSEEECTT-SCCCEEC---TTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCCceEEEeeC-CcCCccC---HHHcccCCCCCEEECCCCc----cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 46899999988 4565432 1233678999999998742 22334566778899999999987535543333343
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhh
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSES 438 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~ 438 (683)
. +++|++|++++|. ++......+. .+ ++|++|++++|....... .....+++|+.|+++.+.++
T Consensus 103 ~-l~~L~~L~l~~n~-l~~~~~~~~~-~l-~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~--------- 166 (285)
T 1ozn_A 103 G-LGRLHTLHLDRCG-LQELGPGLFR-GL-AALQYLYLQDNALQALPD---DTFRDLGNLTHLFLHGNRIS--------- 166 (285)
T ss_dssp T-CTTCCEEECTTSC-CCCCCTTTTT-TC-TTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC---------
T ss_pred C-CcCCCEEECCCCc-CCEECHhHhh-CC-cCCCEEECCCCcccccCH---hHhccCCCccEEECCCCccc---------
Confidence 3 8899999999987 5543322232 34 889999999876442111 11234678888888832221
Q ss_pred hccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCccee
Q 038791 439 KVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEI 518 (683)
Q Consensus 439 ~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L 518 (683)
......+ ..+++|+.|+++ ++.+++.....+.++++|++|
T Consensus 167 ------------------------------------~~~~~~~-~~l~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 167 ------------------------------------SVPERAF-RGLHSLDRLLLH---QNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp ------------------------------------EECTTTT-TTCTTCCEEECC---SSCCCEECTTTTTTCTTCCEE
T ss_pred ------------------------------------ccCHHHh-cCccccCEEECC---CCcccccCHhHccCcccccEe
Confidence 0000101 237889999974 477888877778999999999
Q ss_pred eecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 519 RIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 519 ~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+++ +|.-. ...+..+..+++|+.|+++.|.+.+
T Consensus 207 ~l~---~n~l~------~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 207 YLF---ANNLS------ALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECC---SSCCS------CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred eCC---CCcCC------cCCHHHcccCcccCEEeccCCCccC
Confidence 999 87321 2335668899999999999988765
No 76
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.25 E-value=1.7e-11 Score=112.26 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=77.3
Q ss_pred CCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhc---CCCCcEEEecCCCCCCHHHHHHHH
Q 038791 308 SSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRG---CRRLIKFELEGCKNVTVDGLRTMA 384 (683)
Q Consensus 308 ~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~---~~~L~~L~L~~c~~it~~~l~~l~ 384 (683)
.+|++|++++|. ++ +.++..+..|++|++|+|++|..+||.++..++.. |++|++|+|++|.+||+.|+..+.
T Consensus 61 ~~L~~LDLs~~~-It---d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IM---SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCC-CC---GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCC-cc---HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 356777777764 33 35666777788888888888888888888888862 568888888888888888888886
Q ss_pred HhcccCccEEEeecccccChhh-HHHHHHhcCCCcc
Q 038791 385 ALRRETLVEMKISCCKQLGAVA-SCKALDLVRDRIE 419 (683)
Q Consensus 385 ~~~~~~L~~L~l~~c~~l~~~~-~l~~l~~~~~~L~ 419 (683)
+ + ++|++|++++|+.+++.. ....+....|+++
T Consensus 137 ~-~-~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 137 H-F-RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp G-C-TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred c-C-CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 4 5 888888888888886533 1233334446554
No 77
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=6.1e-11 Score=124.47 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=39.1
Q ss_pred ccccCCCCcEEEeccCCCCCHHHHHHHHh---cCCCCcEEEecCCCCCCHHHHHHHHHh
Q 038791 331 GVSLCGGLESLSIKNCGDLSDMGLVAIGR---GCRRLIKFELEGCKNVTVDGLRTMAAL 386 (683)
Q Consensus 331 ~l~~~~~L~~L~L~~~~~lt~~~l~~l~~---~~~~L~~L~L~~c~~it~~~l~~l~~~ 386 (683)
.+..+++|++|+|++|. +++.+...++. .+++|++|+|++|. |++.+...+...
T Consensus 206 ~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~ 262 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDL 262 (372)
T ss_dssp HGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHC
T ss_pred HHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHH
Confidence 34456678888888875 78877666554 35788888888887 888888777654
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.24 E-value=5.6e-12 Score=129.52 Aligned_cols=209 Identities=19% Similarity=0.191 Sum_probs=126.6
Q ss_pred CCCCCcEEEeccccCcCCChhHHHHH-HhcCCCCcEEEecCcccccccccccccccccC-----CCCcEEEeccCCCCCH
Q 038791 278 GLPLLEELVLDVCKNVRDSGPVLEVL-KSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLC-----GGLESLSIKNCGDLSD 351 (683)
Q Consensus 278 ~~~~L~~L~L~~c~~l~~~~~~l~~l-~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~-----~~L~~L~L~~~~~lt~ 351 (683)
.+++|++|+++++ .+++... ..+ ...+++|++|+++++.- .+. +..++.+ ++|++|+++++. ++.
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l----~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~ 163 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAP--PPLLEATGPDLNILNLRNVSW----ATR-DAWLAELQQWLKPGLKVLSIAQAH-SLN 163 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCC--CCSSSCCSCCCSEEEEESCBC----SSS-SSHHHHHHTTCCTTCCEEEEESCS-CCC
T ss_pred CcCCccEEEccCC-cccchhH--HHHHHhcCCCccEEEccCCCC----cch-hHHHHHHHHhhcCCCcEEEeeCCC-Ccc
Confidence 5788999999884 5553211 111 25688899999987432 122 3444433 889999998875 555
Q ss_pred HHHHHHHhcCCCCcEEEecCCCCCCHH-HH-HHHH-HhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecC
Q 038791 352 MGLVAIGRGCRRLIKFELEGCKNVTVD-GL-RTMA-ALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWD 428 (683)
Q Consensus 352 ~~l~~l~~~~~~L~~L~L~~c~~it~~-~l-~~l~-~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~ 428 (683)
.....+.. +++|+.|++++|. +++. ++ ..+. ..+ ++|++|++++|...........+...+++|+.|+++.+.+
T Consensus 164 ~~~~~~~~-l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 164 FSCEQVRV-FPALSTLDLSDNP-ELGERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CCTTTCCC-CSSCCEEECCSCT-TCHHHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred chHHHhcc-CCCCCEEECCCCC-cCcchHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 43334443 7889999998888 4443 22 2221 334 8888888887754421222223444668888888872221
Q ss_pred ChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccC
Q 038791 429 GLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVG 508 (683)
Q Consensus 429 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 508 (683)
++.........+++|+.|+++ ++.++.++. .
T Consensus 241 ---------------------------------------------~~~~~~~~~~~l~~L~~L~Ls---~N~l~~ip~-~ 271 (312)
T 1wwl_A 241 ---------------------------------------------RDAAGAPSCDWPSQLNSLNLS---FTGLKQVPK-G 271 (312)
T ss_dssp ---------------------------------------------CSSCCCSCCCCCTTCCEEECT---TSCCSSCCS-S
T ss_pred ---------------------------------------------CcccchhhhhhcCCCCEEECC---CCccChhhh-h
Confidence 111100001235789999874 477764433 3
Q ss_pred CCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 509 LDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 509 L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+. ++|++|+++ +|+-. . ...+..+++|+.|+++.|.+++
T Consensus 272 ~~--~~L~~L~Ls---~N~l~------~--~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLS---YNRLD------R--NPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECC---SSCCC------S--CCCTTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECC---CCCCC------C--ChhHhhCCCCCEEeccCCCCCC
Confidence 33 789999999 77321 1 1227788899999998887765
No 79
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.23 E-value=8.1e-12 Score=114.36 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=87.7
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCccccccccccccccccc----CCCCcEEEeccCCCCCHHHHH
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSL----CGGLESLSIKNCGDLSDMGLV 355 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~----~~~L~~L~L~~~~~lt~~~l~ 355 (683)
..|++|++++|. +++.+ +..+ ..|++|++|+|++|..+++ .++..++. +++|++|+|++|..|||.++.
T Consensus 61 ~~L~~LDLs~~~-Itd~G--L~~L-~~~~~L~~L~L~~C~~ItD---~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG--FDHM-EGLQYVEKIRLCKCHYIED---GCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGG--GGGG-TTCSCCCEEEEESCTTCCH---HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHH--HHHh-cCCCCCCEEEeCCCCccCH---HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 469999999986 99888 6665 6799999999999998876 67777775 468999999999999999999
Q ss_pred HHHhcCCCCcEEEecCCCCCCHHHH--HHHHHhcccCcc
Q 038791 356 AIGRGCRRLIKFELEGCKNVTVDGL--RTMAALRRETLV 392 (683)
Q Consensus 356 ~l~~~~~~L~~L~L~~c~~it~~~l--~~l~~~~~~~L~ 392 (683)
.++. |++|++|+|++|+.||+.++ ..+.... |+++
T Consensus 134 ~L~~-~~~L~~L~L~~c~~Itd~gl~~~~L~~~l-P~l~ 170 (176)
T 3e4g_A 134 ALHH-FRNLKYLFLSDLPGVKEKEKIVQAFKTSL-PSLE 170 (176)
T ss_dssp HGGG-CTTCCEEEEESCTTCCCHHHHHHHHHHHC-TTCE
T ss_pred HHhc-CCCCCEEECCCCCCCCchHHHHHHHHHHC-CCcE
Confidence 9986 99999999999999999874 3444445 7655
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.22 E-value=2.7e-12 Score=130.08 Aligned_cols=186 Identities=12% Similarity=0.063 Sum_probs=126.7
Q ss_pred CCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHh
Q 038791 307 CSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAAL 386 (683)
Q Consensus 307 ~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~ 386 (683)
.++|++|+++++. ........++.+++|++|+++++. +++.....+.. +++|++|++++|..++......+..
T Consensus 31 ~~~l~~L~l~~n~----i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~~l~~~~~~~~~~- 103 (285)
T 1ozn_A 31 PAASQRIFLHGNR----ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHG- 103 (285)
T ss_dssp CTTCSEEECTTSC----CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTT-CTTCCEEECCSCTTCCCCCTTTTTT-
T ss_pred CCCceEEEeeCCc----CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCC-ccCCCEEeCCCCCCccccCHHHhcC-
Confidence 5789999998743 222334567788999999999875 66543344444 8899999999986455443333333
Q ss_pred cccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhcccccc
Q 038791 387 RRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLP 466 (683)
Q Consensus 387 ~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~ 466 (683)
+ ++|++|++++|......+ .....+++|+.|+++.+.++
T Consensus 104 l-~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~------------------------------------- 142 (285)
T 1ozn_A 104 L-GRLHTLHLDRCGLQELGP---GLFRGLAALQYLYLQDNALQ------------------------------------- 142 (285)
T ss_dssp C-TTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECCSSCCC-------------------------------------
T ss_pred C-cCCCEEECCCCcCCEECH---hHhhCCcCCCEEECCCCccc-------------------------------------
Confidence 3 889999999876542211 12335688888888732211
Q ss_pred CCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCc
Q 038791 467 EGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYP 546 (683)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~ 546 (683)
......+ ..+++|+.|+++ ++.++.++...+.++++|++|+++ +|... ...+..+..++
T Consensus 143 --------~~~~~~~-~~l~~L~~L~l~---~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~------~~~~~~~~~l~ 201 (285)
T 1ozn_A 143 --------ALPDDTF-RDLGNLTHLFLH---GNRISSVPERAFRGLHSLDRLLLH---QNRVA------HVHPHAFRDLG 201 (285)
T ss_dssp --------CCCTTTT-TTCTTCCEEECC---SSCCCEECTTTTTTCTTCCEEECC---SSCCC------EECTTTTTTCT
T ss_pred --------ccCHhHh-ccCCCccEEECC---CCcccccCHHHhcCccccCEEECC---CCccc------ccCHhHccCcc
Confidence 0011111 237899999974 478887777778999999999999 88321 33367788999
Q ss_pred cccccccccccccee
Q 038791 547 QLTKLRLEFGETIGY 561 (683)
Q Consensus 547 ~L~~L~l~~~~~~g~ 561 (683)
+|+.|+++.|.+.+.
T Consensus 202 ~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 202 RLMTLYLFANNLSAL 216 (285)
T ss_dssp TCCEEECCSSCCSCC
T ss_pred cccEeeCCCCcCCcC
Confidence 999999999988763
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.21 E-value=8.4e-12 Score=125.46 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=55.6
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
+++|+.|+++++ .+++. .. ...+++|++|+++++.- ..+..+..+++|++|++++|. ++......+.
T Consensus 40 l~~L~~L~l~~~-~i~~~----~~-l~~l~~L~~L~l~~n~l------~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 106 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSV----QG-IQYLPNVRYLALGGNKL------HDISALKELTNLTYLILTGNQ-LQSLPNGVFD 106 (272)
T ss_dssp HTTCCEEECTTS-CCCCC----TT-GGGCTTCCEEECTTSCC------CCCGGGTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred ccceeeeeeCCC-Ccccc----cc-cccCCCCcEEECCCCCC------CCchhhcCCCCCCEEECCCCc-cCccChhHhc
Confidence 566777777764 44432 12 24577777777776432 122455666777777777654 4432222222
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeeccc
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCK 400 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~ 400 (683)
.+++|++|++++|. ++......+. .+ ++|++|++++|.
T Consensus 107 -~l~~L~~L~L~~n~-l~~~~~~~~~-~l-~~L~~L~L~~n~ 144 (272)
T 3rfs_A 107 -KLTNLKELVLVENQ-LQSLPDGVFD-KL-TNLTYLNLAHNQ 144 (272)
T ss_dssp -TCTTCCEEECTTSC-CCCCCTTTTT-TC-TTCCEEECCSSC
T ss_pred -CCcCCCEEECCCCc-CCccCHHHhc-cC-CCCCEEECCCCc
Confidence 36667777776665 4432211121 22 566666666553
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.20 E-value=6.3e-12 Score=126.41 Aligned_cols=107 Identities=11% Similarity=0.044 Sum_probs=73.4
Q ss_pred hcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHH
Q 038791 305 SKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMA 384 (683)
Q Consensus 305 ~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~ 384 (683)
..+++|+.|.+.++.- ..+..++.+++|++|+++++. +++. ..+. .+++|++|++++|. +++.....+.
T Consensus 38 ~~l~~L~~L~l~~~~i------~~~~~l~~l~~L~~L~l~~n~-l~~~--~~l~-~l~~L~~L~L~~n~-l~~~~~~~~~ 106 (272)
T 3rfs_A 38 NELNSIDQIIANNSDI------KSVQGIQYLPNVRYLALGGNK-LHDI--SALK-ELTNLTYLILTGNQ-LQSLPNGVFD 106 (272)
T ss_dssp HHHTTCCEEECTTSCC------CCCTTGGGCTTCCEEECTTSC-CCCC--GGGT-TCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred ccccceeeeeeCCCCc------ccccccccCCCCcEEECCCCC-CCCc--hhhc-CCCCCCEEECCCCc-cCccChhHhc
Confidence 3478899999987532 233567789999999999976 6652 3444 48999999999997 6643322232
Q ss_pred HhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeec
Q 038791 385 ALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVW 427 (683)
Q Consensus 385 ~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~ 427 (683)
.+ ++|++|++++|....... .....+++|+.|+++.+.
T Consensus 107 -~l-~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 107 -KL-TNLKELVLVENQLQSLPD---GVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp -TC-TTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECCSSC
T ss_pred -CC-cCCCEEECCCCcCCccCH---HHhccCCCCCEEECCCCc
Confidence 34 899999999886542211 122356889999998433
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=2.1e-12 Score=132.57 Aligned_cols=211 Identities=18% Similarity=0.179 Sum_probs=108.0
Q ss_pred CCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccC
Q 038791 144 CECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVN 223 (683)
Q Consensus 144 ~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~ 223 (683)
+++|++|++++|.+. +..+..+ +...+++|++|+|++|.............+ ..+++|++|+++. +.++
T Consensus 90 ~~~L~~L~l~~n~l~-~~~~~~~--~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~-------n~l~ 158 (310)
T 4glp_A 90 YSRLKELTLEDLKIT-GTMPPLP--LEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQ-------AHSP 158 (310)
T ss_dssp HSCCCEEEEESCCCB-SCCCCCS--SSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEEC-------CSSC
T ss_pred cCceeEEEeeCCEec-cchhhhh--hhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeC-------CCcc
Confidence 456777777777653 2222211 002234777777776652211111111122 2577777777731 1222
Q ss_pred HHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCH-HHHHHH--HhCCCCCcEEEeccccCcCCChhHH
Q 038791 224 DETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSR-EGLIQL--FSGLPLLEELVLDVCKNVRDSGPVL 300 (683)
Q Consensus 224 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~-~~l~~l--~~~~~~L~~L~L~~c~~l~~~~~~l 300 (683)
...... ...+++|++|+++++ .++. .++... ...+++|++|++++| .++..+...
T Consensus 159 ~~~~~~-~~~l~~L~~L~Ls~N--------------------~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~ 216 (310)
T 4glp_A 159 AFSCEQ-VRAFPALTSLDLSDN--------------------PGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVC 216 (310)
T ss_dssp CCCTTS-CCCCTTCCEEECCSC--------------------TTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHH
T ss_pred hhhHHH-hccCCCCCEEECCCC--------------------CCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHH
Confidence 211111 136777888888764 2322 222211 245778888888774 565422212
Q ss_pred HHHHhcCCCCcEEEecCcccccccccccccccccC---CCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCH
Q 038791 301 EVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLC---GGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTV 377 (683)
Q Consensus 301 ~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~---~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~ 377 (683)
..+...+++|++|+++++. ..+..+..+..+ ++|++|++++|. ++. ....+ .++|+.|++++|. +++
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~----l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~-lp~~~---~~~L~~L~Ls~N~-l~~ 286 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNS----LRATVNPSAPRCMWSSALNSLNLSFAG-LEQ-VPKGL---PAKLRVLDLSSNR-LNR 286 (310)
T ss_dssp HHHHHHTCCCSSEECTTSC----CCCCCCSCCSSCCCCTTCCCEECCSSC-CCS-CCSCC---CSCCSCEECCSCC-CCS
T ss_pred HHHHhcCCCCCEEECCCCC----CCccchhhHHhccCcCcCCEEECCCCC-CCc-hhhhh---cCCCCEEECCCCc-CCC
Confidence 2244667888888887643 222233444443 678888887764 552 11111 3567777777776 553
Q ss_pred HHHHHHHHhcccCccEEEeecccc
Q 038791 378 DGLRTMAALRRETLVEMKISCCKQ 401 (683)
Q Consensus 378 ~~l~~l~~~~~~~L~~L~l~~c~~ 401 (683)
.. . ...+ ++|+.|++++|+.
T Consensus 287 ~~--~-~~~l-~~L~~L~L~~N~l 306 (310)
T 4glp_A 287 AP--Q-PDEL-PEVDNLTLDGNPF 306 (310)
T ss_dssp CC--C-TTSC-CCCSCEECSSTTT
T ss_pred Cc--h-hhhC-CCccEEECcCCCC
Confidence 21 1 1223 6677777766543
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=126.95 Aligned_cols=225 Identities=15% Similarity=0.080 Sum_probs=125.8
Q ss_pred CcCHHHHHHHHh--CCCCCcEEEeccccCcCCChhHHHHHH-hcCCCCcEEEecCcccccccccccccccccCCCCcEEE
Q 038791 266 SVSREGLIQLFS--GLPLLEELVLDVCKNVRDSGPVLEVLK-SKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLS 342 (683)
Q Consensus 266 ~lt~~~l~~l~~--~~~~L~~L~L~~c~~l~~~~~~l~~l~-~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~ 342 (683)
.+++..+..+.. .+++|++|++++| .+++.. ...+. ..+++|++|+++++.--..........+..+++|++|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~--~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~ 151 (310)
T 4glp_A 75 QVPAQLLVGALRVLAYSRLKELTLEDL-KITGTM--PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLS 151 (310)
T ss_dssp CCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCC--CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEE
T ss_pred cCCHHHHHHHHHhcccCceeEEEeeCC-Eeccch--hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEE
Confidence 455555544332 3467899998885 444332 11111 56788888888875321100000012334678888888
Q ss_pred eccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHH--HhcccCccEEEeecccccChhhHH-HHHHhcCCCcc
Q 038791 343 IKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMA--ALRRETLVEMKISCCKQLGAVASC-KALDLVRDRIE 419 (683)
Q Consensus 343 L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~--~~~~~~L~~L~l~~c~~l~~~~~l-~~l~~~~~~L~ 419 (683)
+++|. ++......+. .+++|++|++++|...+..++.... ..+ ++|++|++++|... ..... ..+...+++|+
T Consensus 152 Ls~n~-l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~ 227 (310)
T 4glp_A 152 IAQAH-SPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKF-PAIQNLALRNTGME-TPTGVCAALAAAGVQPH 227 (310)
T ss_dssp EECCS-SCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCS
T ss_pred eeCCC-cchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcC-CCCCEEECCCCCCC-chHHHHHHHHhcCCCCC
Confidence 88875 5443323332 3788888888888733333332111 234 78888888877543 22222 22334567888
Q ss_pred EEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCcccccccccccc--ccCCCCceeeeeeec
Q 038791 420 KLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCC--KTWKGLKCLSIWIEV 497 (683)
Q Consensus 420 ~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~~~~L~~L~L~~~~ 497 (683)
.|+++.+.+ ++..+..++ ..+++|+.|+++
T Consensus 228 ~L~Ls~N~l---------------------------------------------~~~~p~~~~~~~~~~~L~~L~Ls--- 259 (310)
T 4glp_A 228 SLDLSHNSL---------------------------------------------RATVNPSAPRCMWSSALNSLNLS--- 259 (310)
T ss_dssp SEECTTSCC---------------------------------------------CCCCCSCCSSCCCCTTCCCEECC---
T ss_pred EEECCCCCC---------------------------------------------CccchhhHHhccCcCcCCEEECC---
Confidence 888873222 111111111 113688888874
Q ss_pred cccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccc
Q 038791 498 GQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETI 559 (683)
Q Consensus 498 ~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 559 (683)
+|.++.++. .+ .++|++|+++ +|+-. +...+..+++|+.|+++.|.++
T Consensus 260 ~N~l~~lp~-~~--~~~L~~L~Ls---~N~l~--------~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 260 FAGLEQVPK-GL--PAKLRVLDLS---SNRLN--------RAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SSCCCSCCS-CC--CSCCSCEECC---SCCCC--------SCCCTTSCCCCSCEECSSTTTS
T ss_pred CCCCCchhh-hh--cCCCCEEECC---CCcCC--------CCchhhhCCCccEEECcCCCCC
Confidence 477775533 23 3789999998 77321 1123567788899988888765
No 85
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=1.3e-10 Score=121.95 Aligned_cols=200 Identities=16% Similarity=0.121 Sum_probs=133.4
Q ss_pred CCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecCCCCccccC
Q 038791 144 CECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFDPRYIGFVN 223 (683)
Q Consensus 144 ~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~l~ 223 (683)
.++|++|+|++|.+...........+...+++|++|+|++|. +++.++..+...+++|++|+|+ .+.++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~----l~~~~~~~l~~~L~~L~~L~Ls-------~n~l~ 139 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ----LDPAGLRTLLPVFLRARKLGLQ-------LNSLG 139 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC----CCHHHHHHTHHHHHTEEEEECC-------SSCCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC----CCHHHHHHHHHHHHhccHhhcC-------CCCCC
Confidence 457889999988764322222222233334689999999764 8888888888888899999994 34788
Q ss_pred HHHHHHHHh----cCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHH---HhCCCCCcEEEeccccCcCCC
Q 038791 224 DETLSAIAT----NCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQL---FSGLPLLEELVLDVCKNVRDS 296 (683)
Q Consensus 224 ~~~l~~l~~----~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l---~~~~~~L~~L~L~~c~~l~~~ 296 (683)
+.+...++. .+++|++|++++| .+++.+...+ +..+++|++|+|++| .+++.
T Consensus 140 ~~~~~~L~~~L~~~~~~L~~L~Ls~n--------------------~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~ 198 (372)
T 3un9_A 140 PEACKDLRDLLLHDQCQITTLRLSNN--------------------PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDE 198 (372)
T ss_dssp HHHHHHHHHHHHSTTCCCCEEECCSS--------------------CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHH
T ss_pred HHHHHHHHHHHHhcCCccceeeCCCC--------------------CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcH
Confidence 887777653 4688999999875 4666665444 456889999999984 67765
Q ss_pred hh-HHHHHHhcCCCCcEEEecCcccccccc-cccccccccCCCCcEEEeccCCCCCHHHHHHHHhcC-CC---CcEEE--
Q 038791 297 GP-VLEVLKSKCSSLKVLKLGQFHGVCLAI-GWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGC-RR---LIKFE-- 368 (683)
Q Consensus 297 ~~-~l~~l~~~~~~L~~L~L~~c~~l~~~~-~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~-~~---L~~L~-- 368 (683)
+. .+...+..+++|+.|+|++|.- ++.. ......+..+++|++|+|++|. +++.+...+.... +. |+.+.
T Consensus 199 g~~~L~~~L~~~~~L~~L~Ls~N~i-~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~~~~L~~l~~l 276 (372)
T 3un9_A 199 GLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGARVVVSL 276 (372)
T ss_dssp HHHHHHHHGGGCSCCCEEECCSSCC-CHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC------CEEECCC
T ss_pred HHHHHHHHHhcCCCcCeEECCCCCC-CHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhcCCCccchhhHhh
Confidence 52 2334446678999999998632 2211 1122334467999999999986 9999999887622 12 66666
Q ss_pred ecCCCCCCHH
Q 038791 369 LEGCKNVTVD 378 (683)
Q Consensus 369 L~~c~~it~~ 378 (683)
+.++. +++.
T Consensus 277 l~~~~-~~~~ 285 (372)
T 3un9_A 277 TEGTA-VSEY 285 (372)
T ss_dssp C-----CHHH
T ss_pred hcCCc-cCHH
Confidence 55554 4444
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.17 E-value=2.4e-11 Score=135.76 Aligned_cols=74 Identities=23% Similarity=0.186 Sum_probs=51.8
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
.++|+.|+++ +|.+++++ ..+++|++|+++ +|.... + .. .+++|+.|+++.|.+. .
T Consensus 220 ~~~L~~L~Ls---~N~L~~lp----~~l~~L~~L~Ls---~N~L~~------l--p~--~~~~L~~L~Ls~N~L~----~ 275 (622)
T 3g06_A 220 PSGLKELIVS---GNRLTSLP----VLPSELKELMVS---GNRLTS------L--PM--LPSGLLSLSVYRNQLT----R 275 (622)
T ss_dssp CTTCCEEECC---SSCCSCCC----CCCTTCCEEECC---SSCCSC------C--CC--CCTTCCEEECCSSCCC----S
T ss_pred CCCCCEEEcc---CCccCcCC----CCCCcCcEEECC---CCCCCc------C--Cc--ccccCcEEeCCCCCCC----c
Confidence 4789999974 47777655 467899999999 883221 1 11 5689999999999877 3
Q ss_pred cCCCCCCchhhHHHhhcc
Q 038791 565 APGGETDLTLWDRFFFNG 582 (683)
Q Consensus 565 ~p~~~~~l~~l~~~~l~~ 582 (683)
.|..+.+++.|+.+++++
T Consensus 276 lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCGGGGGSCTTCEEECCS
T ss_pred CCHHHhhccccCEEEecC
Confidence 366677776666655544
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.10 E-value=7e-11 Score=121.01 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=37.0
Q ss_pred HhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHH
Q 038791 276 FSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLV 355 (683)
Q Consensus 276 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~ 355 (683)
+..+++|++|+++++ .+++.. . ...+++|+.|+++++.- . .+..+..+++|++|+++++. +++...
T Consensus 125 l~~l~~L~~L~l~~n-~l~~~~----~-l~~l~~L~~L~l~~n~l-~-----~~~~l~~l~~L~~L~l~~n~-l~~~~~- 190 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLN-QITNIS----P-LAGLTNLQYLSIGNAQV-S-----DLTPLANLSKLTTLKADDNK-ISDISP- 190 (308)
T ss_dssp GTTCTTCCEEECCSS-CCCCCG----G-GGGCTTCCEEECCSSCC-C-----CCGGGTTCTTCCEEECCSSC-CCCCGG-
T ss_pred hcCCCCCCEEECCCC-ccCcCc----c-ccCCCCccEEEccCCcC-C-----CChhhcCCCCCCEEECCCCc-cCcChh-
Confidence 344566666666553 444322 1 34455566666555321 1 11124455555555555543 332211
Q ss_pred HHHhcCCCCcEEEecCCC
Q 038791 356 AIGRGCRRLIKFELEGCK 373 (683)
Q Consensus 356 ~l~~~~~~L~~L~L~~c~ 373 (683)
+ ..+++|+.|++++|.
T Consensus 191 -l-~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 191 -L-ASLPNLIEVHLKNNQ 206 (308)
T ss_dssp -G-GGCTTCCEEECTTSC
T ss_pred -h-cCCCCCCEEEccCCc
Confidence 2 224555555555554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.09 E-value=1.1e-10 Score=119.50 Aligned_cols=192 Identities=15% Similarity=0.068 Sum_probs=128.4
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
+++|++|++++| .++.. +. ...+++|+.|+++++.- .. +..+..+++|++|+++++. +++. ..+.
T Consensus 40 l~~L~~L~l~~~-~i~~l----~~-~~~l~~L~~L~L~~n~i-~~-----~~~~~~l~~L~~L~L~~n~-l~~~--~~~~ 104 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTI----EG-VQYLNNLIGLELKDNQI-TD-----LAPLKNLTKITELELSGNP-LKNV--SAIA 104 (308)
T ss_dssp HHTCCEEECTTS-CCCCC----TT-GGGCTTCCEEECCSSCC-CC-----CGGGTTCCSCCEEECCSCC-CSCC--GGGT
T ss_pred cCCcCEEEeeCC-CccCc----hh-hhccCCCCEEEccCCcC-CC-----ChhHccCCCCCEEEccCCc-CCCc--hhhc
Confidence 568999999885 55542 22 35689999999988632 21 1227788999999999875 6553 2343
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhh
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSES 438 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~ 438 (683)
. +++|+.|++++|. +++.. .+ ..+ ++|++|++++|... .... ...+++|+.|+++.+.++.
T Consensus 105 ~-l~~L~~L~l~~n~-l~~~~--~l-~~l-~~L~~L~l~~n~l~-~~~~----l~~l~~L~~L~l~~n~l~~-------- 165 (308)
T 1h6u_A 105 G-LQSIKTLDLTSTQ-ITDVT--PL-AGL-SNLQVLYLDLNQIT-NISP----LAGLTNLQYLSIGNAQVSD-------- 165 (308)
T ss_dssp T-CTTCCEEECTTSC-CCCCG--GG-TTC-TTCCEEECCSSCCC-CCGG----GGGCTTCCEEECCSSCCCC--------
T ss_pred C-CCCCCEEECCCCC-CCCch--hh-cCC-CCCCEEECCCCccC-cCcc----ccCCCCccEEEccCCcCCC--------
Confidence 3 8899999999987 66532 23 334 88999999887554 3221 3456888888888332210
Q ss_pred hccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCccee
Q 038791 439 KVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEI 518 (683)
Q Consensus 439 ~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L 518 (683)
.. .+ ..+++|+.|+++ ++.+++... +..+++|++|
T Consensus 166 -------------------------------------~~-~l--~~l~~L~~L~l~---~n~l~~~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 166 -------------------------------------LT-PL--ANLSKLTTLKAD---DNKISDISP--LASLPNLIEV 200 (308)
T ss_dssp -------------------------------------CG-GG--TTCTTCCEEECC---SSCCCCCGG--GGGCTTCCEE
T ss_pred -------------------------------------Ch-hh--cCCCCCCEEECC---CCccCcChh--hcCCCCCCEE
Confidence 00 01 236788888874 466666554 6788889999
Q ss_pred eecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 519 RIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 519 ~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+++ +|.-. +...+..+++|+.|+++.|.+.+
T Consensus 201 ~L~---~N~l~--------~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 201 HLK---NNQIS--------DVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECT---TSCCC--------BCGGGTTCTTCCEEEEEEEEEEC
T ss_pred Ecc---CCccC--------ccccccCCCCCCEEEccCCeeec
Confidence 998 77311 12347888899999998888766
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.99 E-value=9.9e-11 Score=117.87 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=10.3
Q ss_pred hccCcccccccccccccce
Q 038791 542 LTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 542 l~~l~~L~~L~l~~~~~~g 560 (683)
+..+++|+.|+++.|.+.+
T Consensus 220 ~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 220 FDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTTCCSCCEEECCSSCBCC
T ss_pred hcccccccEEEccCCcccc
Confidence 4455555555555555443
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.97 E-value=3.3e-10 Score=113.57 Aligned_cols=203 Identities=12% Similarity=0.062 Sum_probs=119.5
Q ss_pred CCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhc
Q 038791 281 LLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRG 360 (683)
Q Consensus 281 ~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~ 360 (683)
..+.+++++ ..++... . .-.++|+.|+++++.- .......++.+++|++|+++++. ++.... .+...
T Consensus 17 ~~~~l~~~~-~~l~~ip----~--~~~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~-~~~~~ 83 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIP----S--NIPADTKKLDLQSNKL----SSLPSKAFHRLTKLRLLYLNDNK-LQTLPA-GIFKE 83 (270)
T ss_dssp TTTEEECTT-SCCSSCC----S--CCCTTCSEEECCSSCC----SCCCTTSSSSCTTCCEEECCSSC-CSCCCT-TTTSS
T ss_pred CCCEEEccC-CCCCccC----C--CCCCCCCEEECcCCCC----CeeCHHHhcCCCCCCEEECCCCc-cCeeCh-hhhcC
Confidence 467777766 4554321 1 1135688888887432 12233456778888888888764 543221 12234
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhhc
Q 038791 361 CRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESKV 440 (683)
Q Consensus 361 ~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~~ 440 (683)
+++|++|++++|. ++......+ ..+ ++|++|++++|....... .....+++|+.|+++.+.++
T Consensus 84 l~~L~~L~l~~n~-l~~~~~~~~-~~l-~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~----------- 146 (270)
T 2o6q_A 84 LKNLETLWVTDNK-LQALPIGVF-DQL-VNLAELRLDRNQLKSLPP---RVFDSLTKLTYLSLGYNELQ----------- 146 (270)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTT-TTC-SSCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCC-----------
T ss_pred CCCCCEEECCCCc-CCcCCHhHc-ccc-cCCCEEECCCCccCeeCH---HHhCcCcCCCEEECCCCcCC-----------
Confidence 7888888888876 554322222 223 788888888765432111 11234577888888732211
Q ss_pred cccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeee
Q 038791 441 RSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRI 520 (683)
Q Consensus 441 ~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l 520 (683)
......+ ..+++|+.|+++ ++.++.++...+.++++|++|++
T Consensus 147 ----------------------------------~~~~~~~-~~l~~L~~L~L~---~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 147 ----------------------------------SLPKGVF-DKLTSLKELRLY---NNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp ----------------------------------CCCTTTT-TTCTTCCEEECC---SSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ----------------------------------ccCHhHc-cCCcccceeEec---CCcCcEeChhHhccCCCcCEEEC
Confidence 0000101 236788888873 46777777666788888888888
Q ss_pred cccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 521 KMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 521 ~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+ +|... .+....+..+++|+.|+++.|.+..
T Consensus 189 ~---~N~l~------~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 189 D---NNQLK------RVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp C---SSCCS------CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred C---CCcCC------cCCHHHhccccCCCEEEecCCCeeC
Confidence 8 77321 2234456778888888888776543
No 91
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.96 E-value=8.7e-11 Score=118.28 Aligned_cols=203 Identities=16% Similarity=0.042 Sum_probs=125.9
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
++|++|+++++ .++... ......+++|++|+++++.- .......++.+++|++|+++++. ++......+..
T Consensus 28 ~~l~~L~ls~n-~l~~~~---~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLG---SYSFFSFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG 98 (276)
T ss_dssp TTCCEEECTTC-CCCEEC---TTTTTTCTTCSEEECTTCCC----CEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT
T ss_pred CCccEEECCCC-cccccC---HhHhccccCCcEEECCCCcC----CccCHHHccCCcCCCEEECCCCc-cCccChhhhcC
Confidence 46999999884 565432 11335689999999998532 12333467788999999999875 65544334443
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhh
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESK 439 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~ 439 (683)
+++|++|++++|. ++......+. .+ ++|++|++++|.... .. ++.....+++|+.|+++.+.++....
T Consensus 99 -l~~L~~L~l~~n~-l~~~~~~~~~-~l-~~L~~L~l~~n~l~~-~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~------ 166 (276)
T 2z62_A 99 -LSSLQKLVAVETN-LASLENFPIG-HL-KTLKELNVAHNLIQS-FK-LPEYFSNLTNLEHLDLSSNKIQSIYC------ 166 (276)
T ss_dssp -CTTCCEEECTTSC-CCCSTTCCCT-TC-TTCCEEECCSSCCCC-CC-CCGGGGGCTTCCEEECCSSCCCEECG------
T ss_pred -CccccEEECCCCC-ccccCchhcc-cC-CCCCEEECcCCccce-ec-CchhhccCCCCCEEECCCCCCCcCCH------
Confidence 8899999999887 5443222232 34 899999999876532 11 11233456899999998555432111
Q ss_pred ccccCcccCCcHHHHhhhhhhc----cccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCc
Q 038791 440 VRSFDLNELNDEDDELGLRKKR----KFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVL 515 (683)
Q Consensus 440 ~~~l~l~~~~~~~~~~~~~~L~----~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L 515 (683)
..+..+++++ .+.+.. +.+ +........ ..+|+.|+++ ++.++.++...+.++++|
T Consensus 167 ------------~~~~~l~~L~~l~l~L~ls~--n~l-~~~~~~~~~--~~~L~~L~L~---~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 167 ------------TDLRVLHQMPLLNLSLDLSL--NPM-NFIQPGAFK--EIRLKELALD---TNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp ------------GGGHHHHTCTTCCEEEECCS--SCC-CEECTTSSC--SCCEEEEECC---SSCCSCCCTTTTTTCCSC
T ss_pred ------------HHhhhhhhccccceeeecCC--Ccc-cccCccccC--CCcccEEECC---CCceeecCHhHhcccccc
Confidence 1222334444 233321 111 111111122 3479999974 477888777667899999
Q ss_pred ceeeecccCCC
Q 038791 516 EEIRIKMEGDS 526 (683)
Q Consensus 516 ~~L~l~~~~~c 526 (683)
++|+++ ++
T Consensus 227 ~~L~l~---~N 234 (276)
T 2z62_A 227 QKIWLH---TN 234 (276)
T ss_dssp CEEECC---SS
T ss_pred cEEEcc---CC
Confidence 999999 77
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.90 E-value=8.4e-10 Score=111.80 Aligned_cols=202 Identities=14% Similarity=0.045 Sum_probs=125.6
Q ss_pred hCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHH
Q 038791 277 SGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVA 356 (683)
Q Consensus 277 ~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~ 356 (683)
..+++++++++++ +.++... . .-.++++.|+++++. .....+..+..+++|++|+++++. ++....
T Consensus 7 ~~l~~l~~l~~~~-~~l~~ip----~--~~~~~l~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDK-RNLTALP----P--DLPKDTTILHLSENL----LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-- 72 (290)
T ss_dssp ECSTTCCEEECTT-SCCSSCC----S--CCCTTCCEEECTTSC----CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC--
T ss_pred cccCCccEEECCC-CCCCcCC----C--CCCCCCCEEEcCCCc----CCccCHHHhhcCCCCCEEECCCCc-cCcccC--
Confidence 4578899999887 4565422 1 123689999998743 223345667788999999999875 554221
Q ss_pred HHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHH
Q 038791 357 IGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESS 436 (683)
Q Consensus 357 l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~ 436 (683)
. ..+++|+.|++++|. ++. +......+ ++|++|++++|....... .....+++|+.|+++.+.++
T Consensus 73 ~-~~l~~L~~L~Ls~N~-l~~--l~~~~~~l-~~L~~L~l~~N~l~~l~~---~~~~~l~~L~~L~L~~N~l~------- 137 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQ-LQS--LPLLGQTL-PALTVLDVSFNRLTSLPL---GALRGLGELQELYLKGNELK------- 137 (290)
T ss_dssp C-SCCTTCCEEECCSSC-CSS--CCCCTTTC-TTCCEEECCSSCCCCCCS---STTTTCTTCCEEECTTSCCC-------
T ss_pred C-CCCCcCCEEECCCCc-CCc--CchhhccC-CCCCEEECCCCcCcccCH---HHHcCCCCCCEEECCCCCCC-------
Confidence 1 357888888888887 542 11112234 788888888765432110 11234577888877722210
Q ss_pred hhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcc
Q 038791 437 ESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLE 516 (683)
Q Consensus 437 ~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~ 516 (683)
....... ..+++|+.|++ .++.++.++...+.++++|+
T Consensus 138 --------------------------------------~~~~~~~-~~l~~L~~L~L---~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 138 --------------------------------------TLPPGLL-TPTPKLEKLSL---ANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp --------------------------------------CCCTTTT-TTCTTCCEEEC---TTSCCSCCCTTTTTTCTTCC
T ss_pred --------------------------------------ccChhhc-ccccCCCEEEC---CCCcCCccCHHHhcCcCCCC
Confidence 0000111 23678888887 35778777766678889999
Q ss_pred eeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccc
Q 038791 517 EIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETI 559 (683)
Q Consensus 517 ~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 559 (683)
.|+++ +|.-..- +..+...++|+.+++..|.+.
T Consensus 176 ~L~L~---~N~l~~i-------p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 176 TLLLQ---ENSLYTI-------PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECC---SSCCCCC-------CTTTTTTCCCSEEECCSCCBC
T ss_pred EEECC---CCcCCcc-------ChhhcccccCCeEEeCCCCcc
Confidence 99998 7732211 344566778888888877654
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.90 E-value=8.7e-10 Score=104.83 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=78.0
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
+++|++|+++++ .+++ ++ -...+++|++|++++| .+ ..+..+..+++|++|++++|. +++..+..+.
T Consensus 43 l~~L~~L~l~~n-~i~~----l~-~l~~l~~L~~L~l~~n-~~-----~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~ 109 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTD----LT-GIEYAHNIKDLTINNI-HA-----TNYNPISGLSNLERLRIMGKD-VTSDKIPNLS 109 (197)
T ss_dssp HHTCCEEEEESS-CCSC----CT-TGGGCTTCSEEEEESC-CC-----SCCGGGTTCTTCCEEEEECTT-CBGGGSCCCT
T ss_pred cCCccEEeccCC-CccC----hH-HHhcCCCCCEEEccCC-CC-----CcchhhhcCCCCCEEEeECCc-cCcccChhhc
Confidence 567888888873 5554 22 2356788888888876 22 233466677888888888764 6655555554
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
. +++|+.|++++|. +++..+..+... ++|++|++++|..+++.+ ....+++|+.|+++
T Consensus 110 ~-l~~L~~L~Ls~n~-i~~~~~~~l~~l--~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 110 G-LTSLTLLDISHSA-HDDSILTKINTL--PKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQ 167 (197)
T ss_dssp T-CTTCCEEECCSSB-CBGGGHHHHTTC--SSCCEEECCSCTBCCCCG----GGGGCSSCCEEECT
T ss_pred C-CCCCCEEEecCCc-cCcHhHHHHhhC--CCCCEEEccCCCCccccH----hhcCCCCCCEEECC
Confidence 4 7778888887776 666555555433 777777777776444332 12234555555555
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.90 E-value=7.3e-10 Score=105.37 Aligned_cols=152 Identities=14% Similarity=0.032 Sum_probs=111.5
Q ss_pred cCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcE
Q 038791 233 NCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKV 312 (683)
Q Consensus 233 ~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~ 312 (683)
.+++|++|+++++. +++ ++ .+..+++|++|++++| .+++. . ....+++|++
T Consensus 42 ~l~~L~~L~l~~n~--------------------i~~--l~-~l~~l~~L~~L~l~~n-~~~~~----~-~l~~l~~L~~ 92 (197)
T 4ezg_A 42 QMNSLTYITLANIN--------------------VTD--LT-GIEYAHNIKDLTINNI-HATNY----N-PISGLSNLER 92 (197)
T ss_dssp HHHTCCEEEEESSC--------------------CSC--CT-TGGGCTTCSEEEEESC-CCSCC----G-GGTTCTTCCE
T ss_pred hcCCccEEeccCCC--------------------ccC--hH-HHhcCCCCCEEEccCC-CCCcc----h-hhhcCCCCCE
Confidence 56789999998752 221 11 1567899999999996 56553 2 2356999999
Q ss_pred EEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCcc
Q 038791 313 LKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLV 392 (683)
Q Consensus 313 L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~ 392 (683)
|+++++. ..+..+..++.+++|++|++++|. +++..+..+.. +++|++|++++|..+++.. .+ ..+ ++|+
T Consensus 93 L~l~~n~----l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~-l~~L~~L~L~~n~~i~~~~--~l-~~l-~~L~ 162 (197)
T 4ezg_A 93 LRIMGKD----VTSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINT-LPKVNSIDLSYNGAITDIM--PL-KTL-PELK 162 (197)
T ss_dssp EEEECTT----CBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHHHTT-CSSCCEEECCSCTBCCCCG--GG-GGC-SSCC
T ss_pred EEeECCc----cCcccChhhcCCCCCCEEEecCCc-cCcHhHHHHhh-CCCCCEEEccCCCCccccH--hh-cCC-CCCC
Confidence 9999843 333456778899999999999986 88877777765 9999999999997566542 33 335 9999
Q ss_pred EEEeecccccChhhHHHHHHhcCCCccEEEEeeecC
Q 038791 393 EMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWD 428 (683)
Q Consensus 393 ~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~ 428 (683)
.|++++|... +.. ....+++|+.|+++++.+
T Consensus 163 ~L~l~~n~i~-~~~----~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 163 SLNIQFDGVH-DYR----GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECTTBCCC-CCT----TGGGCSSCCEEEECBC--
T ss_pred EEECCCCCCc-ChH----HhccCCCCCEEEeeCccc
Confidence 9999988654 322 234579999999996554
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.89 E-value=4.5e-10 Score=113.83 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=40.6
Q ss_pred cCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHH
Q 038791 306 KCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAA 385 (683)
Q Consensus 306 ~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~ 385 (683)
++++++.+++.+.. ++ ..+..+ .++++.|+++++. ++......+.. +++|++|++++|. ++..... .
T Consensus 8 ~l~~l~~l~~~~~~-l~----~ip~~~--~~~l~~L~L~~N~-l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~---~ 74 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LT----ALPPDL--PKDTTILHLSENL-LYTFSLATLMP-YTRLTQLNLDRAE-LTKLQVD---G 74 (290)
T ss_dssp CSTTCCEEECTTSC-CS----SCCSCC--CTTCCEEECTTSC-CSEEEGGGGTT-CTTCCEEECTTSC-CCEEECC---S
T ss_pred ccCCccEEECCCCC-CC----cCCCCC--CCCCCEEEcCCCc-CCccCHHHhhc-CCCCCEEECCCCc-cCcccCC---C
Confidence 45667777776521 11 122222 2567777777654 54433333333 6667777776665 4432111 1
Q ss_pred hcccCccEEEeeccc
Q 038791 386 LRRETLVEMKISCCK 400 (683)
Q Consensus 386 ~~~~~L~~L~l~~c~ 400 (683)
.+ ++|+.|++++|.
T Consensus 75 ~l-~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 75 TL-PVLGTLDLSHNQ 88 (290)
T ss_dssp CC-TTCCEEECCSSC
T ss_pred CC-CcCCEEECCCCc
Confidence 22 556666665543
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.86 E-value=2.4e-09 Score=108.53 Aligned_cols=101 Identities=12% Similarity=0.132 Sum_probs=48.9
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
+++|+.|++++| .+++. +. ...+++|+.|+++++.- . .+..++.+++|++|+++++. +++ +..+.
T Consensus 45 l~~L~~L~l~~~-~i~~~----~~-~~~l~~L~~L~L~~n~l-~-----~~~~l~~l~~L~~L~l~~n~-l~~--~~~l~ 109 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV----QG-IQYLPNVTKLFLNGNKL-T-----DIKPLANLKNLGWLFLDENK-VKD--LSSLK 109 (291)
T ss_dssp HHTCCEEECTTS-CCCCC----TT-GGGCTTCCEEECCSSCC-C-----CCGGGTTCTTCCEEECCSSC-CCC--GGGGT
T ss_pred cCcccEEEccCC-CcccC----hh-HhcCCCCCEEEccCCcc-C-----CCcccccCCCCCEEECCCCc-CCC--Chhhc
Confidence 455666666664 34332 11 24466666666665322 1 11125566666666666654 443 12222
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeeccc
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCK 400 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~ 400 (683)
.+++|+.|++++|. +++. ..+. .+ ++|+.|++++|.
T Consensus 110 -~l~~L~~L~L~~n~-i~~~--~~l~-~l-~~L~~L~l~~n~ 145 (291)
T 1h6t_A 110 -DLKKLKSLSLEHNG-ISDI--NGLV-HL-PQLESLYLGNNK 145 (291)
T ss_dssp -TCTTCCEEECTTSC-CCCC--GGGG-GC-TTCCEEECCSSC
T ss_pred -cCCCCCEEECCCCc-CCCC--hhhc-CC-CCCCEEEccCCc
Confidence 25566666666555 3331 1121 22 555555555443
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.84 E-value=4.5e-10 Score=110.42 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=45.9
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
++|++|++++ +.++... ......+++|++|+++++..+.. .....+..+++|++|++++|+.++......+ .
T Consensus 31 ~~l~~L~l~~-n~l~~i~---~~~~~~l~~L~~L~l~~n~~l~~---i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f-~ 102 (239)
T 2xwt_C 31 PSTQTLKLIE-THLRTIP---SHAFSNLPNISRIYVSIDVTLQQ---LESHSFYNLSKVTHIEIRNTRNLTYIDPDAL-K 102 (239)
T ss_dssp TTCCEEEEES-CCCSEEC---TTTTTTCTTCCEEEEECCSSCCE---ECTTTEESCTTCCEEEEEEETTCCEECTTSE-E
T ss_pred CcccEEEEeC-CcceEEC---HHHccCCCCCcEEeCCCCCCcce---eCHhHcCCCcCCcEEECCCCCCeeEcCHHHh-C
Confidence 3678888877 3554321 11234577777877776532221 1223455677777777776333443221112 2
Q ss_pred cCCCCcEEEecCCC
Q 038791 360 GCRRLIKFELEGCK 373 (683)
Q Consensus 360 ~~~~L~~L~L~~c~ 373 (683)
.+++|++|++++|.
T Consensus 103 ~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 103 ELPLLKFLGIFNTG 116 (239)
T ss_dssp CCTTCCEEEEEEEC
T ss_pred CCCCCCEEeCCCCC
Confidence 25566666666654
No 98
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.83 E-value=1.4e-09 Score=108.95 Aligned_cols=179 Identities=12% Similarity=0.066 Sum_probs=119.9
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
++|++|+++++ .++... ...+..+++|++|+++++.- .......+..+++|++|+++++. ++......+ .
T Consensus 37 ~~l~~L~l~~n-~l~~~~---~~~~~~l~~L~~L~l~~n~l----~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~ 106 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLP---SKAFHRLTKLRLLYLNDNKL----QTLPAGIFKELKNLETLWVTDNK-LQALPIGVF-D 106 (270)
T ss_dssp TTCSEEECCSS-CCSCCC---TTSSSSCTTCCEEECCSSCC----SCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTT-T
T ss_pred CCCCEEECcCC-CCCeeC---HHHhcCCCCCCEEECCCCcc----CeeChhhhcCCCCCCEEECCCCc-CCcCCHhHc-c
Confidence 57999999984 565432 12346789999999987432 12222345688999999999875 554332223 3
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhhh
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSESK 439 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~~ 439 (683)
.+++|++|++++|. ++......+. .+ ++|++|++++|....... .....+++|+.|+++.+.++
T Consensus 107 ~l~~L~~L~l~~n~-l~~~~~~~~~-~l-~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~---------- 170 (270)
T 2o6q_A 107 QLVNLAELRLDRNQ-LKSLPPRVFD-SL-TKLTYLSLGYNELQSLPK---GVFDKLTSLKELRLYNNQLK---------- 170 (270)
T ss_dssp TCSSCCEEECCSSC-CCCCCTTTTT-TC-TTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCS----------
T ss_pred cccCCCEEECCCCc-cCeeCHHHhC-cC-cCCCEEECCCCcCCccCH---hHccCCcccceeEecCCcCc----------
Confidence 48999999999987 5554333333 34 899999999886432111 12235689999999832211
Q ss_pred ccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceee
Q 038791 440 VRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIR 519 (683)
Q Consensus 440 ~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~ 519 (683)
......+ ..+++|+.|+++ ++.++.++...+..+++|+.|+
T Consensus 171 -----------------------------------~~~~~~~-~~l~~L~~L~L~---~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 171 -----------------------------------RVPEGAF-DKLTELKTLKLD---NNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp -----------------------------------CCCTTTT-TTCTTCCEEECC---SSCCSCCCTTTTTTCTTCCEEE
T ss_pred -----------------------------------EeChhHh-ccCCCcCEEECC---CCcCCcCCHHHhccccCCCEEE
Confidence 0000101 237899999974 4788887777788999999999
Q ss_pred ecccCCC
Q 038791 520 IKMEGDS 526 (683)
Q Consensus 520 l~~~~~c 526 (683)
++ +|
T Consensus 212 l~---~N 215 (270)
T 2o6q_A 212 LQ---EN 215 (270)
T ss_dssp CC---SS
T ss_pred ec---CC
Confidence 99 77
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.81 E-value=2.5e-09 Score=108.41 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=33.4
Q ss_pred ccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccc
Q 038791 331 GVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQ 401 (683)
Q Consensus 331 ~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~ 401 (683)
.+..+++|++|++++|. +++... + ..+++|+.|++++|. +++. ..+. .+ ++|+.|++++|+.
T Consensus 151 ~l~~l~~L~~L~L~~N~-l~~~~~--l-~~l~~L~~L~L~~N~-i~~l--~~l~-~l-~~L~~L~l~~n~i 212 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQ-ISDIVP--L-AGLTKLQNLYLSKNH-ISDL--RALA-GL-KNLDVLELFSQEC 212 (291)
T ss_dssp GGGGCTTCSEEECCSSC-CCCCGG--G-TTCTTCCEEECCSSC-CCBC--GGGT-TC-TTCSEEEEEEEEE
T ss_pred hhccCCCCCEEEccCCc-cccchh--h-cCCCccCEEECCCCc-CCCC--hhhc-cC-CCCCEEECcCCcc
Confidence 44455566666666553 443221 2 236666666666665 4442 2222 23 7777777776654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.79 E-value=4.3e-09 Score=117.41 Aligned_cols=168 Identities=11% Similarity=0.091 Sum_probs=99.0
Q ss_pred CCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHH
Q 038791 278 GLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAI 357 (683)
Q Consensus 278 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l 357 (683)
.+++|+.|++++| .+... +. +..+++|+.|+|+++.- . .+..+..+++|+.|+|++|. +++ +..+
T Consensus 41 ~L~~L~~L~l~~n-~i~~l----~~-l~~l~~L~~L~Ls~N~l-~-----~~~~l~~l~~L~~L~Ls~N~-l~~--l~~l 105 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSV----QG-IQYLPNVTKLFLNGNKL-T-----DIKPLTNLKNLGWLFLDENK-IKD--LSSL 105 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCC----TT-GGGCTTCCEEECTTSCC-C-----CCGGGGGCTTCCEEECCSSC-CCC--CTTS
T ss_pred cCCCCCEEECcCC-CCCCC----hH-HccCCCCCEEEeeCCCC-C-----CChhhccCCCCCEEECcCCC-CCC--Chhh
Confidence 3567888888774 45442 22 35678888888877532 1 11226677888888888764 554 2233
Q ss_pred HhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHh
Q 038791 358 GRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSE 437 (683)
Q Consensus 358 ~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~ 437 (683)
. .+++|+.|+|++|. +++. ..+. .+ ++|+.|+|++|... ... ....+++|+.|+|+.+.++
T Consensus 106 ~-~l~~L~~L~Ls~N~-l~~l--~~l~-~l-~~L~~L~Ls~N~l~-~l~----~l~~l~~L~~L~Ls~N~l~-------- 166 (605)
T 1m9s_A 106 K-DLKKLKSLSLEHNG-ISDI--NGLV-HL-PQLESLYLGNNKIT-DIT----VLSRLTKLDTLSLEDNQIS-------- 166 (605)
T ss_dssp T-TCTTCCEEECTTSC-CCCC--GGGG-GC-TTCSEEECCSSCCC-CCG----GGGSCTTCSEEECCSSCCC--------
T ss_pred c-cCCCCCEEEecCCC-CCCC--cccc-CC-CccCEEECCCCccC-Cch----hhcccCCCCEEECcCCcCC--------
Confidence 3 37778888887776 5542 2222 23 77777777766543 221 2234567777777622210
Q ss_pred hhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcce
Q 038791 438 SKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEE 517 (683)
Q Consensus 438 ~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~ 517 (683)
+... + ..+++|+.|+|+ ++.++++ ..+..+++|+.
T Consensus 167 -------------------------------------~~~~-l--~~l~~L~~L~Ls---~N~i~~l--~~l~~l~~L~~ 201 (605)
T 1m9s_A 167 -------------------------------------DIVP-L--AGLTKLQNLYLS---KNHISDL--RALAGLKNLDV 201 (605)
T ss_dssp -------------------------------------CCGG-G--TTCTTCCEEECC---SSCCCBC--GGGTTCTTCSE
T ss_pred -------------------------------------Cchh-h--ccCCCCCEEECc---CCCCCCC--hHHccCCCCCE
Confidence 0001 1 236778888863 3666654 34677888888
Q ss_pred eeecccCCCC
Q 038791 518 IRIKMEGDSR 527 (683)
Q Consensus 518 L~l~~~~~c~ 527 (683)
|+++ +|+
T Consensus 202 L~L~---~N~ 208 (605)
T 1m9s_A 202 LELF---SQE 208 (605)
T ss_dssp EECC---SEE
T ss_pred EEcc---CCc
Confidence 8887 763
No 101
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=7.5e-08 Score=100.05 Aligned_cols=135 Identities=16% Similarity=0.060 Sum_probs=75.5
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHH-hcCCCCcEEEecCcccccccccccc----ccc--ccCCCCcEEEeccCCCCCH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLK-SKCSSLKVLKLGQFHGVCLAIGWQL----DGV--SLCGGLESLSIKNCGDLSD 351 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~-~~~~~L~~L~L~~c~~l~~~~~~~~----~~l--~~~~~L~~L~L~~~~~lt~ 351 (683)
.++|++|+|..| .+++.+ +..+. ..+|+|++|+|+.+.... ..+..+ ..+ ..+|+|++|.+.+|. +++
T Consensus 192 ~~~L~~L~L~~~-~l~~~~--l~~l~~~~lp~L~~L~L~~~~~~~-~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~ 266 (362)
T 2ra8_A 192 RPNLKSLEIISG-GLPDSV--VEDILGSDLPNLEKLVLYVGVEDY-GFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQN 266 (362)
T ss_dssp CTTCSEEEEECS-BCCHHH--HHHHHHSBCTTCCEEEEECBCGGG-TCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THH
T ss_pred CCCCcEEEEecC-CCChHH--HHHHHHccCCCCcEEEEecccccc-ccchhHHHHHHHHhcCCCCCcCEEeCCCCC-Cch
Confidence 456666666553 344332 33333 246666666664211100 000011 111 246788888888775 677
Q ss_pred HHHHHHHh--cCCCCcEEEecCCCCCCHHHHHHHH---HhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 352 MGLVAIGR--GCRRLIKFELEGCKNVTVDGLRTMA---ALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 352 ~~l~~l~~--~~~~L~~L~L~~c~~it~~~l~~l~---~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
.+...++. .+|+|++|+|+.|. +++.|...+. ..+ ++|+.|++++|. + +..++..+...+ ...++++
T Consensus 267 ~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l-~~L~~L~L~~n~-i-~d~~~~~l~~al--g~~~~~~ 338 (362)
T 2ra8_A 267 VVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKI-KHLKFINMKYNY-L-SDEMKKELQKSL--PMKIDVS 338 (362)
T ss_dssp HHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHH-TTCSEEECCSBB-C-CHHHHHHHHHHC--CSEEECC
T ss_pred HHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccC-CcceEEECCCCc-C-CHHHHHHHHHHc--CCEEEec
Confidence 66666654 36788888887766 8887766654 234 788888887664 4 334455555422 3445555
No 102
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=5.9e-08 Score=100.84 Aligned_cols=166 Identities=19% Similarity=0.197 Sum_probs=101.9
Q ss_pred HHHHHhhCCCCceEEeceecCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHH
Q 038791 195 IREITAACPSLNKLLVACTFDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQ 274 (683)
Q Consensus 195 l~~l~~~~~~L~~L~L~c~~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~ 274 (683)
+..++..+|+|++|.|++.. .+. +..+ ..++|++|++..| .++..++..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~------~l~---l~~~--~~~~L~~L~L~~~--------------------~l~~~~l~~ 212 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTN------NLS---IGKK--PRPNLKSLEIISG--------------------GLPDSVVED 212 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCB------TCB---CCSC--BCTTCSEEEEECS--------------------BCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEeCCC------Cce---eccc--cCCCCcEEEEecC--------------------CCChHHHHH
Confidence 44555666777777772110 011 0111 3567777777643 456666665
Q ss_pred HHh-CCCCCcEEEeccccCc--CCChh-HHHHHH--hcCCCCcEEEecCccccccccccccccc---ccCCCCcEEEecc
Q 038791 275 LFS-GLPLLEELVLDVCKNV--RDSGP-VLEVLK--SKCSSLKVLKLGQFHGVCLAIGWQLDGV---SLCGGLESLSIKN 345 (683)
Q Consensus 275 l~~-~~~~L~~L~L~~c~~l--~~~~~-~l~~l~--~~~~~L~~L~L~~c~~l~~~~~~~~~~l---~~~~~L~~L~L~~ 345 (683)
+.. .+|+|++|+|+.+.+. .+.+. .+..+. ..+|+|+.|++.+|... +.+...+ ..+++|++|+|+.
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~----~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ----NVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH----HHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc----hHHHHHHHhCccCCCCCEEECCC
Confidence 543 5777777777532111 11110 011111 24788888888775432 1122223 2578999999987
Q ss_pred CCCCCHHHHHHHHh---cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeeccc
Q 038791 346 CGDLSDMGLVAIGR---GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCK 400 (683)
Q Consensus 346 ~~~lt~~~l~~l~~---~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~ 400 (683)
+. +++.+...+.. .+++|+.|+|++|. +++.++..+...+ ..+++++...
T Consensus 289 n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~al---g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GV-LTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSL---PMKIDVSDSQ 341 (362)
T ss_dssp SC-CBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHHHC---CSEEECCSBC
T ss_pred CC-CChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHHHc---CCEEEecCCc
Confidence 64 99998887764 37999999999997 9999999987753 4668887654
No 103
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.78 E-value=5.1e-10 Score=109.98 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=114.2
Q ss_pred CCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHh
Q 038791 307 CSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAAL 386 (683)
Q Consensus 307 ~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~ 386 (683)
.++|+.|+++++. ........++.+++|++|+++++..++......+ ..+++|++|++++|..++......+. .
T Consensus 30 ~~~l~~L~l~~n~----l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~~i~~~~f~-~ 103 (239)
T 2xwt_C 30 PPSTQTLKLIETH----LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPDALK-E 103 (239)
T ss_dssp CTTCCEEEEESCC----CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCCEECTTSEE-C
T ss_pred CCcccEEEEeCCc----ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCeeEcCHHHhC-C
Confidence 3589999998743 2222334677899999999998753543322223 34899999999984336643322222 2
Q ss_pred cccCccEEEeecccccChhhHHHHHHhcCCCcc---EEEEeee-cCChhhHHHHhhhccccCcccCCcHHHHhhhhhhcc
Q 038791 387 RRETLVEMKISCCKQLGAVASCKALDLVRDRIE---KLHIDCV-WDGLELTESSESKVRSFDLNELNDEDDELGLRKKRK 462 (683)
Q Consensus 387 ~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~---~L~L~c~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~ 462 (683)
+ ++|++|++++|... ..+ . ...+++|+ .|+++.+ .++ .
T Consensus 104 l-~~L~~L~l~~n~l~-~lp---~-~~~l~~L~~L~~L~l~~N~~l~--------------------------------~ 145 (239)
T 2xwt_C 104 L-PLLKFLGIFNTGLK-MFP---D-LTKVYSTDIFFILEITDNPYMT--------------------------------S 145 (239)
T ss_dssp C-TTCCEEEEEEECCC-SCC---C-CTTCCBCCSEEEEEEESCTTCC--------------------------------E
T ss_pred C-CCCCEEeCCCCCCc-ccc---c-cccccccccccEEECCCCcchh--------------------------------h
Confidence 4 89999999988643 222 1 23457777 8888832 211 0
Q ss_pred ccccCCCCccccccccccccccCCCCc-eeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhh
Q 038791 463 FCLPEGGNWHLQIKENGVCCKTWKGLK-CLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSC 541 (683)
Q Consensus 463 l~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~ 541 (683)
+ ....+ ..+++|+ .|+++ ++.++.++...+.. ++|++|+++ +|+.++ .+.+..
T Consensus 146 i------------~~~~~--~~l~~L~~~L~l~---~n~l~~i~~~~~~~-~~L~~L~L~---~n~~l~-----~i~~~~ 199 (239)
T 2xwt_C 146 I------------PVNAF--QGLCNETLTLKLY---NNGFTSVQGYAFNG-TKLDAVYLN---KNKYLT-----VIDKDA 199 (239)
T ss_dssp E------------CTTTT--TTTBSSEEEEECC---SCCCCEECTTTTTT-CEEEEEECT---TCTTCC-----EECTTT
T ss_pred c------------Ccccc--cchhcceeEEEcC---CCCCcccCHhhcCC-CCCCEEEcC---CCCCcc-----cCCHHH
Confidence 0 00001 2367788 88863 46666555544555 788888888 774332 333456
Q ss_pred hccC-cccccccccccccce
Q 038791 542 LTRY-PQLTKLRLEFGETIG 560 (683)
Q Consensus 542 l~~l-~~L~~L~l~~~~~~g 560 (683)
+..+ ++|+.|+++.|.+.+
T Consensus 200 ~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TTTCSBCCSEEECTTCCCCC
T ss_pred hhccccCCcEEECCCCcccc
Confidence 7777 888888888887765
No 104
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.76 E-value=2.6e-09 Score=77.30 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=35.3
Q ss_pred CCcCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhccccccc
Q 038791 3 ATTINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQRA 44 (683)
Q Consensus 3 ~~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~~ 44 (683)
...|.+||+|++.+||+|| +.+|++++++||| |++++.+..
T Consensus 6 ~~~~~~LP~eil~~I~~~L-~~~dl~~~~~Vck~w~~~~~~~~ 47 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLASDES 47 (53)
T ss_dssp ---CCSSCHHHHHHHHTTS-CGGGHHHHHTTCHHHHHHHTCGG
T ss_pred CCCHHHCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCChH
Confidence 4679999999999999999 9999999999999 999996443
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.71 E-value=6e-09 Score=103.09 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+++|+.|+++ ++.++.++...+.++++|+.|+++ +|... .+.+..+..+++|+.|+++.|.+.+
T Consensus 130 l~~L~~L~Ls---~N~l~~~~~~~~~~l~~L~~L~L~---~N~l~------~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 130 LTKLKELRLN---TNQLQSIPAGAFDKLTNLQTLSLS---TNQLQ------SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTCCEEECC---SSCCCCCCTTTTTTCTTCCEEECC---SSCCS------CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCcccEEECc---CCcCCccCHHHcCcCcCCCEEECC---CCcCC------ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 5677888763 467776666667788888888888 66321 2224456777888888888777665
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.66 E-value=1e-08 Score=114.45 Aligned_cols=17 Identities=6% Similarity=-0.015 Sum_probs=9.4
Q ss_pred hhcCCCCCEEEeeCccc
Q 038791 141 FEHCECLKSIDLSNFYF 157 (683)
Q Consensus 141 ~~~~~~L~~L~Ls~~~~ 157 (683)
+..+++|+.|+|++|.+
T Consensus 61 l~~l~~L~~L~Ls~N~l 77 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKL 77 (605)
T ss_dssp GGGCTTCCEEECTTSCC
T ss_pred HccCCCCCEEEeeCCCC
Confidence 44555566666655544
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.65 E-value=1.5e-08 Score=91.37 Aligned_cols=39 Identities=23% Similarity=0.151 Sum_probs=17.0
Q ss_pred HhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEe
Q 038791 276 FSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKL 315 (683)
Q Consensus 276 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L 315 (683)
+..+++|++|+++++ .+++...........+++|+.|++
T Consensus 109 ~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 109 LKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp GGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 444555555555553 333322111123344555555544
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.63 E-value=2e-08 Score=90.54 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=93.8
Q ss_pred CCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHH
Q 038791 278 GLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAI 357 (683)
Q Consensus 278 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l 357 (683)
..++|+.|++++| .+++.. ++.....+++|+.|+++++. +.. ...++.+++|++|++++|. +++.. ...
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~--~~~~~~~l~~L~~L~l~~n~-l~~-----~~~~~~l~~L~~L~Ls~n~-i~~~~-~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGK--LEGLTDEFEELEFLSTINVG-LTS-----IANLPKLNKLKKLELSDNR-VSGGL-EVL 83 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTB--CCSCCTTCTTCCEEECTTSC-CCC-----CTTCCCCTTCCEEECCSSC-CCSCT-HHH
T ss_pred CCccCeEEEccCC-cCChhH--HHHHHhhcCCCcEEECcCCC-CCC-----chhhhcCCCCCEEECCCCc-ccchH-HHH
Confidence 3478999999996 565222 33445678999999999863 221 2667889999999999986 66643 334
Q ss_pred HhcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 358 GRGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 358 ~~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
...+++|++|++++|. +++.........+ ++|++|++++|...............+++|+.|+++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4449999999999998 7775432333445 999999999886542221112345567999998765
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=4.4e-08 Score=101.06 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecc
Q 038791 361 CRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCC 399 (683)
Q Consensus 361 ~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c 399 (683)
..+++.+.+.+. +.......+...| ++|+.|++.++
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~-~~L~~l~L~~n 236 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYM-PNLVSLDISKT 236 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHC-TTCCEEECTTB
T ss_pred ccccceEEEeee--ecHHHHHHHHHhc-CCCeEEECCCC
Confidence 345666666554 3555555555555 66666666654
No 110
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=3.4e-07 Score=85.68 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=65.5
Q ss_pred HHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCC
Q 038791 270 EGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDL 349 (683)
Q Consensus 270 ~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~l 349 (683)
+.+..++..++.|++|+|++|..+++.+ +..+. ..+...++|++|+|++|. +
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g--~~~l~-------------------------~~L~~~~~L~~L~Ls~n~-i 77 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPT--LKACA-------------------------EALKTNTYVKKFSIVGTR-S 77 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHH--HHHHH-------------------------HHHTTCCSCCEEECTTSC-C
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHH--HHHHH-------------------------HHHHhCCCcCEEECcCCC-C
Confidence 3455555566666666666643555444 22221 122234555555665554 5
Q ss_pred CHHHHHHHHh---cCCCCcEEEecCCCCCCHHHHHHHHHhcc--cCccEEEe--ecccccChhh--HHHHHHhcCCCccE
Q 038791 350 SDMGLVAIGR---GCRRLIKFELEGCKNVTVDGLRTMAALRR--ETLVEMKI--SCCKQLGAVA--SCKALDLVRDRIEK 420 (683)
Q Consensus 350 t~~~l~~l~~---~~~~L~~L~L~~c~~it~~~l~~l~~~~~--~~L~~L~l--~~c~~l~~~~--~l~~l~~~~~~L~~ 420 (683)
++.+...++. ..+.|++|+|++|. |++.|...++..+. ++|++|++ ++| .+++.. .+......+++|+.
T Consensus 78 ~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~ 155 (185)
T 1io0_A 78 NDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLK 155 (185)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCE
T ss_pred ChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCE
Confidence 6655544433 23556666666665 66666555554421 45666666 333 332211 12222234456666
Q ss_pred EEEeeecCChh
Q 038791 421 LHIDCVWDGLE 431 (683)
Q Consensus 421 L~L~c~~~~~~ 431 (683)
|+|+.+.++..
T Consensus 156 L~L~~n~i~~~ 166 (185)
T 1io0_A 156 FGYHFTQQGPR 166 (185)
T ss_dssp EECCCSSHHHH
T ss_pred EeccCCCCChH
Confidence 66665555443
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.58 E-value=1.3e-08 Score=97.56 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=49.6
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
+++|+.|+++ ++.+++++...+.++++|++|+++ +|. + ...+++|+.|++..|.+.|.+
T Consensus 123 l~~L~~L~l~---~N~l~~~~~~~~~~l~~L~~L~l~---~N~---------~----~~~~~~l~~L~~~~n~~~g~i-- 181 (208)
T 2o6s_A 123 LTQLKDLRLY---QNQLKSVPDGVFDRLTSLQYIWLH---DNP---------W----DCTCPGIRYLSEWINKHSGVV-- 181 (208)
T ss_dssp CTTCCEEECC---SSCCSCCCTTTTTTCTTCCEEECC---SCC---------B----CCCTTTTHHHHHHHHHCTTTB--
T ss_pred CCcCCEEECC---CCccceeCHHHhccCCCccEEEec---CCC---------e----ecCCCCHHHHHHHHHhCCcee--
Confidence 6788998874 477777776668889999999999 772 2 245788999999999888854
Q ss_pred cCCCCCCc
Q 038791 565 APGGETDL 572 (683)
Q Consensus 565 ~p~~~~~l 572 (683)
|..++++
T Consensus 182 -p~~~~~l 188 (208)
T 2o6s_A 182 -RNSAGSV 188 (208)
T ss_dssp -BCTTSSB
T ss_pred -eccCccc
Confidence 5555444
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.56 E-value=3e-08 Score=97.98 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=30.5
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCC
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDS 526 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c 526 (683)
+++|+.|+++ +|.++.++...+.++++|+.|+++ +|
T Consensus 154 l~~L~~L~L~---~N~l~~~~~~~~~~l~~L~~L~l~---~N 189 (251)
T 3m19_A 154 LTNLQTLSLS---TNQLQSVPHGAFDRLGKLQTITLF---GN 189 (251)
T ss_dssp CTTCCEEECC---SSCCSCCCTTTTTTCTTCCEEECC---SC
T ss_pred CcCCCEEECC---CCcCCccCHHHHhCCCCCCEEEee---CC
Confidence 6889999974 478888777778899999999999 77
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.55 E-value=1.9e-08 Score=92.76 Aligned_cols=41 Identities=22% Similarity=0.099 Sum_probs=19.2
Q ss_pred hCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCc
Q 038791 277 SGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQF 318 (683)
Q Consensus 277 ~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c 318 (683)
..+++|++|+++++ .++.........+..+++|+.|++.+|
T Consensus 117 ~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 117 KKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp SSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred hcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 34556666666553 343322111123345556666655543
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.54 E-value=4.2e-08 Score=93.87 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=48.9
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+++|+.|+++ ++.++.+....+.++++|++|+++ +|.-. .+....+..+++|+.|+++.|.+.+
T Consensus 99 l~~L~~L~L~---~N~l~~~~~~~~~~l~~L~~L~l~---~N~l~------~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 99 LTQLKELALN---TNQLQSLPDGVFDKLTQLKDLRLY---QNQLK------SVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CTTCCEEECC---SSCCCCCCTTTTTTCTTCCEEECC---SSCCS------CCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred ccCCCEEEcC---CCcCcccCHhHhccCCcCCEEECC---CCccc------eeCHHHhccCCCccEEEecCCCeec
Confidence 6789999874 477777776668899999999999 77321 2224457889999999999887665
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=1.2e-09 Score=121.04 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=87.2
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
..|+.|++++ +.++. ++. +..+++|+.|+++++. . ...+..++.+++|+.|+|+++. ++. +..+..
T Consensus 441 ~~L~~L~Ls~-n~l~~----lp~-~~~l~~L~~L~Ls~N~----l-~~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~l~~ 506 (567)
T 1dce_A 441 ADVRVLHLAH-KDLTV----LCH-LEQLLLVTHLDLSHNR----L-RALPPALAALRCLEVLQASDNA-LEN--VDGVAN 506 (567)
T ss_dssp TTCSEEECTT-SCCSS----CCC-GGGGTTCCEEECCSSC----C-CCCCGGGGGCTTCCEEECCSSC-CCC--CGGGTT
T ss_pred cCceEEEecC-CCCCC----CcC-ccccccCcEeecCccc----c-cccchhhhcCCCCCEEECCCCC-CCC--CcccCC
Confidence 3688999988 46665 333 4678899999998743 2 2455678889999999999875 665 334444
Q ss_pred cCCCCcEEEecCCCCCCHHH-HHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEE
Q 038791 360 GCRRLIKFELEGCKNVTVDG-LRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHI 423 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~-l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L 423 (683)
+++|+.|+|++|. +++.. +..+.. + ++|+.|++++|+..+..+....+...+|+|+.|++
T Consensus 507 -l~~L~~L~Ls~N~-l~~~~~p~~l~~-l-~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 -LPRLQELLLCNNR-LQQSAAIQPLVS-C-PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CSSCCEEECCSSC-CCSSSTTGGGGG-C-TTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -CCCCcEEECCCCC-CCCCCCcHHHhc-C-CCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8899999999887 66653 344443 4 89999999988654322223344555788888864
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.51 E-value=2.4e-08 Score=92.04 Aligned_cols=136 Identities=18% Similarity=0.164 Sum_probs=96.1
Q ss_pred CCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHH
Q 038791 278 GLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAI 357 (683)
Q Consensus 278 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l 357 (683)
..++|++|++++| .+++.. ++.....+++|+.|+++++. +.. ...+..+++|++|++++|. +++. +..+
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~--i~~~~~~l~~L~~L~l~~n~-l~~-----~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~ 90 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGK--IEGLTAEFVNLEFLSLINVG-LIS-----VSNLPKLPKLKKLELSENR-IFGG-LDML 90 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTB--CSSCCGGGGGCCEEEEESSC-CCC-----CSSCCCCSSCCEEEEESCC-CCSC-CCHH
T ss_pred CcccCCEEECCCC-CCChhh--HHHHHHhCCCCCEEeCcCCC-CCC-----hhhhccCCCCCEEECcCCc-CchH-HHHH
Confidence 3588999999996 565222 34445678999999999865 322 2677789999999999986 6654 3344
Q ss_pred HhcCCCCcEEEecCCCCCCHHH-HHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeec
Q 038791 358 GRGCRRLIKFELEGCKNVTVDG-LRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVW 427 (683)
Q Consensus 358 ~~~~~~L~~L~L~~c~~it~~~-l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~ 427 (683)
...+++|+.|++++|. +++.. +..+. .+ ++|++|++++|+..............+++|+.|+++.+.
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~-~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLK-KL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGS-SC-SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHh-cC-CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 4459999999999997 77642 23333 34 999999999987653222122355578999999998433
No 117
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=5.7e-07 Score=84.18 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=81.6
Q ss_pred ccccCCCCcEEEeccCCCCCHHHHHHHHh---cCCCCcEEEecCCCCCCHHHHHHHHHhcc--cCccEEEeecccccChh
Q 038791 331 GVSLCGGLESLSIKNCGDLSDMGLVAIGR---GCRRLIKFELEGCKNVTVDGLRTMAALRR--ETLVEMKISCCKQLGAV 405 (683)
Q Consensus 331 ~l~~~~~L~~L~L~~~~~lt~~~l~~l~~---~~~~L~~L~L~~c~~it~~~l~~l~~~~~--~~L~~L~l~~c~~l~~~ 405 (683)
.+..+++|++|+|++|..+++.+...++. .+++|++|+|++|. +++.+...++..+. ++|++|+|++|. ++ .
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~-~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-IS-G 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CC-H
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CC-H
Confidence 34567888889998873499998887765 36899999999998 99999877765431 789999999875 43 3
Q ss_pred hHHHHHH---hcCCCccEEEE--eeecCChhhHHHHhhh
Q 038791 406 ASCKALD---LVRDRIEKLHI--DCVWDGLELTESSESK 439 (683)
Q Consensus 406 ~~l~~l~---~~~~~L~~L~L--~c~~~~~~~~~~~~~~ 439 (683)
.+...++ ..+++|+.|+| +++.+++++...+++.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~ 146 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence 3344444 35689999999 7899999888777654
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.51 E-value=1.7e-09 Score=119.90 Aligned_cols=206 Identities=18% Similarity=0.191 Sum_probs=123.9
Q ss_pred cCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCC----------CCCCCHHHHHHHHhhCCCCceEE-ec
Q 038791 143 HCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSF----------TEGFKAQEIREITAACPSLNKLL-VA 211 (683)
Q Consensus 143 ~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~----------c~~i~~~~l~~l~~~~~~L~~L~-L~ 211 (683)
.+++|+.|+|+++.+ ..+|..++.++ +|+.|++++|.. +. . ....+..+..+++|+.|+ ++
T Consensus 347 ~~~~L~~L~Ls~n~L--~~Lp~~i~~l~----~L~~L~l~~n~~l~~l~~ll~~~~-~-~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 347 TDEQLFRCELSVEKS--TVLQSELESCK----ELQELEPENKWCLLTIILLMRALD-P-LLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp TTTTSSSCCCCHHHH--HHHHHHHHHHH----HHHHHCTTCHHHHHHHHHHHHHHC-T-GGGHHHHHHHHHHHHHHCGGG
T ss_pred cCccceeccCChhhH--HhhHHHHHHHH----HHHHhccccchhhhhHHHHHHhcc-c-ccCCHHHHHHHHhcccCcchh
Confidence 456666777766655 25565565555 666666653210 00 0 112334556667777777 32
Q ss_pred ee-cCCCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccc
Q 038791 212 CT-FDPRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVC 290 (683)
Q Consensus 212 c~-~~~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c 290 (683)
+. +.......++...+..+. ...|+.|+++++ .++. ++. +..+++|+.|+|++
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n--------------------~l~~--lp~-~~~l~~L~~L~Ls~- 472 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKME--YADVRVLHLAHK--------------------DLTV--LCH-LEQLLLVTHLDLSH- 472 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTTCSEEECTTS--------------------CCSS--CCC-GGGGTTCCEEECCS-
T ss_pred hcccchhhhhhhhcccccccC--ccCceEEEecCC--------------------CCCC--CcC-ccccccCcEeecCc-
Confidence 11 000000011112233332 246999999875 2221 223 56789999999998
Q ss_pred cCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHH-HHHHHhcCCCCcEEEe
Q 038791 291 KNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMG-LVAIGRGCRRLIKFEL 369 (683)
Q Consensus 291 ~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~-l~~l~~~~~~L~~L~L 369 (683)
+.++. ++..+..+++|+.|+|+++. .. .+..++.+++|+.|+|+++. +++.. +..+.. +++|+.|+|
T Consensus 473 N~l~~----lp~~~~~l~~L~~L~Ls~N~----l~--~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~-l~~L~~L~L 540 (567)
T 1dce_A 473 NRLRA----LPPALAALRCLEVLQASDNA----LE--NVDGVANLPRLQELLLCNNR-LQQSAAIQPLVS-CPRLVLLNL 540 (567)
T ss_dssp SCCCC----CCGGGGGCTTCCEEECCSSC----CC--CCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGG-CTTCCEEEC
T ss_pred ccccc----cchhhhcCCCCCEEECCCCC----CC--CCcccCCCCCCcEEECCCCC-CCCCCCcHHHhc-CCCCCEEEe
Confidence 46764 44455789999999999843 21 13378899999999999975 77654 455554 999999999
Q ss_pred cCCCCCCHH--HHHHHHHhcccCccEEEe
Q 038791 370 EGCKNVTVD--GLRTMAALRRETLVEMKI 396 (683)
Q Consensus 370 ~~c~~it~~--~l~~l~~~~~~~L~~L~l 396 (683)
++|. +++. ....+...+ |+|+.|++
T Consensus 541 ~~N~-l~~~~~~~~~l~~~l-p~L~~L~l 567 (567)
T 1dce_A 541 QGNS-LCQEEGIQERLAEML-PSVSSILT 567 (567)
T ss_dssp TTSG-GGGSSSCTTHHHHHC-TTCSEEEC
T ss_pred cCCc-CCCCccHHHHHHHHC-cccCccCC
Confidence 9997 5543 223344556 89999864
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.40 E-value=5.6e-08 Score=96.78 Aligned_cols=38 Identities=32% Similarity=0.398 Sum_probs=16.4
Q ss_pred cccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCC
Q 038791 332 VSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCK 373 (683)
Q Consensus 332 l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~ 373 (683)
++.+++|++|+++++. +++. ..+. .+++|+.|++++|.
T Consensus 124 l~~l~~L~~L~Ls~N~-i~~~--~~l~-~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNK-LKSI--VMLG-FLSKLEVLDLHGNE 161 (263)
T ss_dssp GTTCTTCCEEECTTSC-CCBC--GGGG-GCTTCCEEECTTSC
T ss_pred hcCcccccEEECCCCc-CCCC--hHHc-cCCCCCEEECCCCc
Confidence 4444555555555443 3332 1122 24455555554444
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.39 E-value=1.8e-07 Score=103.09 Aligned_cols=182 Identities=17% Similarity=0.107 Sum_probs=113.0
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
+.+|+.|+++++ +++... . .-.++|+.|+++++.- + ..+ ..+++|++|++++|. ++. +..+
T Consensus 58 ~~~L~~L~Ls~n-~L~~lp----~--~l~~~L~~L~Ls~N~l-~----~ip---~~l~~L~~L~Ls~N~-l~~--ip~l- 118 (571)
T 3cvr_A 58 INQFSELQLNRL-NLSSLP----D--NLPPQITVLEITQNAL-I----SLP---ELPASLEYLDACDNR-LST--LPEL- 118 (571)
T ss_dssp HTTCSEEECCSS-CCSCCC----S--CCCTTCSEEECCSSCC-S----CCC---CCCTTCCEEECCSSC-CSC--CCCC-
T ss_pred cCCccEEEeCCC-CCCccC----H--hHcCCCCEEECcCCCC-c----ccc---cccCCCCEEEccCCC-CCC--cchh-
Confidence 357889998874 565422 1 1147788888887422 1 122 356888888888874 554 2222
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecCChhhHHHHhh
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWDGLELTESSES 438 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~~~~~ 438 (683)
..+|+.|++++|. ++. +.. .+ ++|+.|++++|... ..+. .+++|+.|+++.|.+
T Consensus 119 --~~~L~~L~Ls~N~-l~~--lp~---~l-~~L~~L~Ls~N~l~-~lp~------~l~~L~~L~Ls~N~L---------- 172 (571)
T 3cvr_A 119 --PASLKHLDVDNNQ-LTM--LPE---LP-ALLEYINADNNQLT-MLPE------LPTSLEVLSVRNNQL---------- 172 (571)
T ss_dssp --CTTCCEEECCSSC-CSC--CCC---CC-TTCCEEECCSSCCS-CCCC------CCTTCCEEECCSSCC----------
T ss_pred --hcCCCEEECCCCc-CCC--CCC---cC-ccccEEeCCCCccC-cCCC------cCCCcCEEECCCCCC----------
Confidence 2378888888887 554 222 34 78888888877543 2221 357788888872221
Q ss_pred hccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCc---
Q 038791 439 KVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVL--- 515 (683)
Q Consensus 439 ~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L--- 515 (683)
+. .+. ++ ++|+.|+++ +|.++.++. +.+ +|
T Consensus 173 -----------------------------------~~-lp~-l~---~~L~~L~Ls---~N~L~~lp~--~~~--~L~~~ 205 (571)
T 3cvr_A 173 -----------------------------------TF-LPE-LP---ESLEALDVS---TNLLESLPA--VPV--RNHHS 205 (571)
T ss_dssp -----------------------------------SC-CCC-CC---TTCCEEECC---SSCCSSCCC--CC--------
T ss_pred -----------------------------------CC-cch-hh---CCCCEEECc---CCCCCchhh--HHH--hhhcc
Confidence 11 111 11 789999974 477776655 433 66
Q ss_pred ----ceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceee
Q 038791 516 ----EEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYA 562 (683)
Q Consensus 516 ----~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~ 562 (683)
+.|+++ +|... .+ +..+..+++|+.|+|+.|.++|..
T Consensus 206 ~~~L~~L~Ls---~N~l~------~l-p~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 206 EETEIFFRCR---ENRIT------HI-PENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp --CCEEEECC---SSCCC------CC-CGGGGGSCTTEEEECCSSSCCHHH
T ss_pred cccceEEecC---CCcce------ec-CHHHhcCCCCCEEEeeCCcCCCcC
Confidence 999999 87321 11 455777999999999999988844
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.36 E-value=1.2e-07 Score=94.43 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=64.8
Q ss_pred CcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcC
Q 038791 282 LEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGC 361 (683)
Q Consensus 282 L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~ 361 (683)
++.++++. +.+++.. . ...+++|+.|+++++. +. .+..+..+++|++|+++++. +++... + ..+
T Consensus 21 l~~l~l~~-~~i~~~~----~-~~~l~~L~~L~l~~n~-i~-----~l~~l~~l~~L~~L~L~~N~-i~~~~~--l-~~l 84 (263)
T 1xeu_A 21 AVKQNLGK-QSVTDLV----S-QKELSGVQNFNGDNSN-IQ-----SLAGMQFFTNLKELHLSHNQ-ISDLSP--L-KDL 84 (263)
T ss_dssp HHHHHHTC-SCTTSEE----C-HHHHTTCSEEECTTSC-CC-----CCTTGGGCTTCCEEECCSSC-CCCCGG--G-TTC
T ss_pred HHHHHhcC-CCccccc----c-hhhcCcCcEEECcCCC-cc-----cchHHhhCCCCCEEECCCCc-cCCChh--h-ccC
Confidence 44445555 3454421 1 2457888888888752 22 12356677888888888764 555332 3 347
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 362 RRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 362 ~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
++|+.|++++|. +++.. .+. . ++|+.|++++|... ..+. ...+++|+.|+++
T Consensus 85 ~~L~~L~L~~N~-l~~l~--~~~--~-~~L~~L~L~~N~l~-~~~~----l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 85 TKLEELSVNRNR-LKNLN--GIP--S-ACLSRLFLDNNELR-DTDS----LIHLKNLEILSIR 136 (263)
T ss_dssp SSCCEEECCSSC-CSCCT--TCC--C-SSCCEEECCSSCCS-BSGG----GTTCTTCCEEECT
T ss_pred CCCCEEECCCCc-cCCcC--ccc--c-CcccEEEccCCccC-CChh----hcCcccccEEECC
Confidence 778888887776 44311 110 1 56777777766432 2211 2244666666666
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=1.2e-07 Score=97.70 Aligned_cols=87 Identities=9% Similarity=0.011 Sum_probs=57.4
Q ss_pred hhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcc-eeeecccCCCCCCCCCCC
Q 038791 456 GLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLE-EIRIKMEGDSRGRQKPSD 534 (683)
Q Consensus 456 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~-~L~l~~~~~c~~~~~~~~ 534 (683)
.|++|+.+.+..+ .+.......+.+ |++|+.+.+. ++++.++...+.+|++|+ ++++. + .++
T Consensus 224 ~~~~L~~l~L~~n--~i~~I~~~aF~~--~~~L~~l~l~----~ni~~I~~~aF~~~~~L~~~l~l~---~--~l~---- 286 (329)
T 3sb4_A 224 YMPNLVSLDISKT--NATTIPDFTFAQ--KKYLLKIKLP----HNLKTIGQRVFSNCGRLAGTLELP---A--SVT---- 286 (329)
T ss_dssp HCTTCCEEECTTB--CCCEECTTTTTT--CTTCCEEECC----TTCCEECTTTTTTCTTCCEEEEEC---T--TCC----
T ss_pred hcCCCeEEECCCC--CcceecHhhhhC--CCCCCEEECC----cccceehHHHhhCChhccEEEEEc---c--cce----
Confidence 3667777766322 122233333333 7889988863 236777777788999998 89887 4 222
Q ss_pred ccchhhhhccCcccccccccccccce
Q 038791 535 RAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 535 ~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
..+...+.+|++|+.+++..|.+..
T Consensus 287 -~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 287 -AIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp -EECTTTTTTCTTEEEEEECSSCCCE
T ss_pred -EEchhhhhCCccCCEEEeCCCccCc
Confidence 5556778889999999887776654
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.33 E-value=1.6e-08 Score=105.41 Aligned_cols=136 Identities=12% Similarity=-0.022 Sum_probs=79.3
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
+++++|+|++ ++++.-. ...+.++++|++|+|+++.-... .....+..+++|+++.+..++.++......+ .
T Consensus 30 ~~l~~L~Ls~-N~i~~i~---~~~f~~l~~L~~L~Ls~N~i~~~---i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f-~ 101 (350)
T 4ay9_X 30 RNAIELRFVL-TKLRVIQ---KGAFSGFGDLEKIEISQNDVLEV---IEADVFSNLPKLHEIRIEKANNLLYINPEAF-Q 101 (350)
T ss_dssp TTCSEEEEES-CCCSEEC---TTSSTTCTTCCEEEEECCTTCCE---ECTTSBCSCTTCCEEEEEEETTCCEECTTSB-C
T ss_pred CCCCEEEccC-CcCCCcC---HHHHcCCCCCCEEECcCCCCCCc---cChhHhhcchhhhhhhcccCCcccccCchhh-h
Confidence 5799999998 5676421 12336789999999998543211 1123456778887766555444554322223 3
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeec
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVW 427 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~ 427 (683)
.+++|++|++++|. ++.......... .++..|++.++..+..... .........++.|+++.+.
T Consensus 102 ~l~~L~~L~l~~n~-l~~~~~~~~~~~--~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 102 NLPNLQYLLISNTG-IKHLPDVHKIHS--LQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp CCTTCCEEEEEEEC-CSSCCCCTTCCB--SSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSSC
T ss_pred hccccccccccccc-cccCCchhhccc--chhhhhhhccccccccccc-cchhhcchhhhhhcccccc
Confidence 48899999999887 443221111122 5677888887776643221 0011122467778887443
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.31 E-value=5.4e-07 Score=99.35 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=62.8
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
+++|++|++++ +.++. ++ ..+++|+.|+++++.- + ..+. +.. +|++|++++|. ++. +..
T Consensus 79 ~~~L~~L~Ls~-N~l~~----ip---~~l~~L~~L~Ls~N~l-~----~ip~-l~~--~L~~L~Ls~N~-l~~--lp~-- 137 (571)
T 3cvr_A 79 PPQITVLEITQ-NALIS----LP---ELPASLEYLDACDNRL-S----TLPE-LPA--SLKHLDVDNNQ-LTM--LPE-- 137 (571)
T ss_dssp CTTCSEEECCS-SCCSC----CC---CCCTTCCEEECCSSCC-S----CCCC-CCT--TCCEEECCSSC-CSC--CCC--
T ss_pred cCCCCEEECcC-CCCcc----cc---cccCCCCEEEccCCCC-C----Ccch-hhc--CCCEEECCCCc-CCC--CCC--
Confidence 35677777777 35553 22 3467777777776421 1 1222 322 77777777764 544 111
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEe
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHID 424 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~ 424 (683)
.+++|+.|++++|. ++.. .. .+ ++|++|++++|... ..+. ..++|+.|+|+
T Consensus 138 -~l~~L~~L~Ls~N~-l~~l--p~---~l-~~L~~L~Ls~N~L~-~lp~------l~~~L~~L~Ls 188 (571)
T 3cvr_A 138 -LPALLEYINADNNQ-LTML--PE---LP-TSLEVLSVRNNQLT-FLPE------LPESLEALDVS 188 (571)
T ss_dssp -CCTTCCEEECCSSC-CSCC--CC---CC-TTCCEEECCSSCCS-CCCC------CCTTCCEEECC
T ss_pred -cCccccEEeCCCCc-cCcC--CC---cC-CCcCEEECCCCCCC-Ccch------hhCCCCEEECc
Confidence 46777777777776 5431 11 23 67777777766533 2221 11677777777
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.31 E-value=2.2e-07 Score=86.24 Aligned_cols=136 Identities=16% Similarity=0.114 Sum_probs=93.9
Q ss_pred hCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHH
Q 038791 277 SGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVA 356 (683)
Q Consensus 277 ~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~ 356 (683)
..+++|++|+++++ .++. ++.+....++|+.|+++++.- . .+..++.+++|++|+++++. ++.... .
T Consensus 16 ~~~~~L~~L~l~~n-~l~~----i~~~~~~~~~L~~L~Ls~N~l-~-----~~~~l~~l~~L~~L~Ls~N~-l~~~~~-~ 82 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPV----IENLGATLDQFDAIDFSDNEI-R-----KLDGFPLLRRLKTLLVNNNR-ICRIGE-G 82 (176)
T ss_dssp ECTTSCEEEECTTS-CCCS----CCCGGGGTTCCSEEECCSSCC-C-----EECCCCCCSSCCEEECCSSC-CCEECS-C
T ss_pred CCcCCceEEEeeCC-CCch----hHHhhhcCCCCCEEECCCCCC-C-----cccccccCCCCCEEECCCCc-ccccCc-c
Confidence 35789999999985 6664 233444456999999998532 2 22677889999999999975 664321 2
Q ss_pred HHhcCCCCcEEEecCCCCCCHHH-HHHHHHhcccCccEEEeecccccChhhHHHHHHhcCCCccEEEEeeecC
Q 038791 357 IGRGCRRLIKFELEGCKNVTVDG-LRTMAALRRETLVEMKISCCKQLGAVASCKALDLVRDRIEKLHIDCVWD 428 (683)
Q Consensus 357 l~~~~~~L~~L~L~~c~~it~~~-l~~l~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~~~~~L~~L~L~c~~~ 428 (683)
+...+++|+.|++++|. +++.. +..+. .+ ++|+.|++++|+.......-......+++|+.|+++.+..
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~-~l-~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGDLDPLA-SL-KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGG-GC-TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCc-CCcchhhHhhh-cC-CCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 32349999999999998 66532 22333 34 8999999999876422221122455789999999985443
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.29 E-value=1.3e-07 Score=89.74 Aligned_cols=112 Identities=22% Similarity=0.286 Sum_probs=66.7
Q ss_pred cHHHHhhcCCCCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCCCCCCCCHHHHHHHHhhCCCCceEEeceecC
Q 038791 136 EFIPLFEHCECLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTSFTEGFKAQEIREITAACPSLNKLLVACTFD 215 (683)
Q Consensus 136 ~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~ 215 (683)
.++..+..+++|++|++++|.+.. ++ .+..++ +|+.|++++|. ++. ++.....+++|+.|+++.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~----~L~~L~l~~n~----l~~--l~~~~~~~~~L~~L~L~~--- 102 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK--IS-SLSGME----NLRILSLGRNL----IKK--IENLDAVADTLEELWISY--- 102 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHT----TCCEEEEEEEE----ECS--CSSHHHHHHHCSEEEEEE---
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCC----CCCEEECCCCC----ccc--ccchhhcCCcCCEEECcC---
Confidence 344567788888888888887632 44 455555 88888888765 221 223344567788888832
Q ss_pred CCCccccCHHHHHHHHhcCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccc
Q 038791 216 PRYIGFVNDETLSAIATNCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVC 290 (683)
Q Consensus 216 ~~~~~~l~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c 290 (683)
+.++. +..+ ..+++|++|+++++ .+++......+..+++|++|+++++
T Consensus 103 ----N~l~~--l~~~-~~l~~L~~L~l~~N--------------------~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 103 ----NQIAS--LSGI-EKLVNLRVLYMSNN--------------------KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp ----EECCC--HHHH-HHHHHSSEEEESEE--------------------ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred ----CcCCc--CCcc-ccCCCCCEEECCCC--------------------cCCchhHHHHHhcCCCCCEEEecCC
Confidence 13333 2233 25677777777653 3433222233556777777777763
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.29 E-value=9e-08 Score=99.67 Aligned_cols=87 Identities=15% Similarity=0.030 Sum_probs=42.9
Q ss_pred CCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHhcCCCCcEEEecCCCCCCHHHHHHHHHhc
Q 038791 308 SSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGRGCRRLIKFELEGCKNVTVDGLRTMAALR 387 (683)
Q Consensus 308 ~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~it~~~l~~l~~~~ 387 (683)
+++++|+|++. ....-....++.+++|++|+|+++. +..........++++|+++.+.++.+++......+. .+
T Consensus 30 ~~l~~L~Ls~N----~i~~i~~~~f~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~-~l 103 (350)
T 4ay9_X 30 RNAIELRFVLT----KLRVIQKGAFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-NL 103 (350)
T ss_dssp TTCSEEEEESC----CCSEECTTSSTTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC-CC
T ss_pred CCCCEEEccCC----cCCCcCHHHHcCCCCCCEEECcCCC-CCCccChhHhhcchhhhhhhcccCCcccccCchhhh-hc
Confidence 57888888763 2211222346677788888887764 221111111123556655444333334432221221 23
Q ss_pred ccCccEEEeecccc
Q 038791 388 RETLVEMKISCCKQ 401 (683)
Q Consensus 388 ~~~L~~L~l~~c~~ 401 (683)
++|++|++++|..
T Consensus 104 -~~L~~L~l~~n~l 116 (350)
T 4ay9_X 104 -PNLQYLLISNTGI 116 (350)
T ss_dssp -TTCCEEEEEEECC
T ss_pred -ccccccccccccc
Confidence 6677777776543
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.23 E-value=8.9e-07 Score=85.41 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=68.2
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
+++|+.|+++ ++.++.+....+.++++|++|+++ +|... .+.+..+..+++|++|+++.|.+.+..
T Consensus 56 l~~L~~L~L~---~N~i~~i~~~~~~~l~~L~~L~Ls---~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~-- 121 (220)
T 2v70_A 56 LPQLRKINFS---NNKITDIEEGAFEGASGVNEILLT---SNRLE------NVQHKMFKGLESLKTLMLRSNRITCVG-- 121 (220)
T ss_dssp CTTCCEEECC---SSCCCEECTTTTTTCTTCCEEECC---SSCCC------CCCGGGGTTCSSCCEEECTTSCCCCBC--
T ss_pred CCCCCEEECC---CCcCCEECHHHhCCCCCCCEEECC---CCccC------ccCHhHhcCCcCCCEEECCCCcCCeEC--
Confidence 6777777763 466776666667777888888887 66321 223455677788888888777776632
Q ss_pred cCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 565 APGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 565 ~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
|..+.+++.|+. | ++..|++++..|.. ++.+++|+.|++++|..
T Consensus 122 -~~~~~~l~~L~~-------------L------~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 122 -NDSFIGLSSVRL-------------L------SLYDNQITTVAPGA--FDTLHSLSTLNLLANPF 165 (220)
T ss_dssp -TTSSTTCTTCSE-------------E------ECTTSCCCCBCTTT--TTTCTTCCEEECCSCCE
T ss_pred -HhHcCCCccCCE-------------E------ECCCCcCCEECHHH--hcCCCCCCEEEecCcCC
Confidence 444444433222 2 12346666555554 67777777777777763
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.18 E-value=3.9e-07 Score=88.56 Aligned_cols=108 Identities=22% Similarity=0.262 Sum_probs=58.8
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
+++|+.|+++ ++.++.++...+.++++|+.|+++ +|... .+.+..+..+++|+.|+++.|.+..
T Consensus 63 l~~L~~L~L~---~N~l~~i~~~~~~~l~~L~~L~Ls---~N~l~------~l~~~~~~~l~~L~~L~Ls~N~l~~---- 126 (229)
T 3e6j_A 63 LINLKELYLG---SNQLGALPVGVFDSLTQLTVLDLG---TNQLT------VLPSAVFDRLVHLKELFMCCNKLTE---- 126 (229)
T ss_dssp CTTCCEEECC---SSCCCCCCTTTTTTCTTCCEEECC---SSCCC------CCCTTTTTTCTTCCEEECCSSCCCS----
T ss_pred ccCCcEEECC---CCCCCCcChhhcccCCCcCEEECC---CCcCC------ccChhHhCcchhhCeEeccCCcccc----
Confidence 5566666653 355555555445666666666666 55211 1223335556666666666665552
Q ss_pred cCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccch
Q 038791 565 APGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTA 629 (683)
Q Consensus 565 ~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~ 629 (683)
.|..+.+++. |..| ++..|+++. +|+ +.++.+++|+.|++.+|.
T Consensus 127 lp~~~~~l~~-------------L~~L------~L~~N~l~~-~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 127 LPRGIERLTH-------------LTHL------ALDQNQLKS-IPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCTTGGGCTT-------------CSEE------ECCSSCCCC-CCT-TTTTTCTTCCEEECTTSC
T ss_pred cCcccccCCC-------------CCEE------ECCCCcCCc-cCH-HHHhCCCCCCEEEeeCCC
Confidence 2433333332 2223 223465553 333 347778888888888875
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.18 E-value=7.6e-08 Score=93.02 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=36.0
Q ss_pred CCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHH
Q 038791 278 GLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAI 357 (683)
Q Consensus 278 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l 357 (683)
.+++|++|++++ +.++... ...+..+++|+.|+++++. ........+..+++|++|+++++. ++......+
T Consensus 55 ~l~~L~~L~L~~-N~i~~i~---~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 125 (220)
T 2v70_A 55 KLPQLRKINFSN-NKITDIE---EGAFEGASGVNEILLTSNR----LENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSF 125 (220)
T ss_dssp GCTTCCEEECCS-SCCCEEC---TTTTTTCTTCCEEECCSSC----CCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSS
T ss_pred cCCCCCEEECCC-CcCCEEC---HHHhCCCCCCCEEECCCCc----cCccCHhHhcCCcCCCEEECCCCc-CCeECHhHc
Confidence 455555555555 2333211 1122345555555555421 111222334445555555555543 332221222
Q ss_pred HhcCCCCcEEEecCCC
Q 038791 358 GRGCRRLIKFELEGCK 373 (683)
Q Consensus 358 ~~~~~~L~~L~L~~c~ 373 (683)
. .+++|+.|+|++|.
T Consensus 126 ~-~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 126 I-GLSSVRLLSLYDNQ 140 (220)
T ss_dssp T-TCTTCSEEECTTSC
T ss_pred C-CCccCCEEECCCCc
Confidence 2 24455555555544
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.14 E-value=4.1e-07 Score=87.83 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=66.4
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
+++|+.|+++ ++.++.+....+.++++|++|+++ +|+.. .+....+..+++|+.|+|+.|.+.+..
T Consensus 55 l~~L~~L~Ls---~N~i~~~~~~~~~~l~~L~~L~Ls---~N~l~------~l~~~~f~~l~~L~~L~L~~N~l~~~~-- 120 (220)
T 2v9t_B 55 YKKLRRIDLS---NNQISELAPDAFQGLRSLNSLVLY---GNKIT------ELPKSLFEGLFSLQLLLLNANKINCLR-- 120 (220)
T ss_dssp CTTCCEEECC---SSCCCEECTTTTTTCSSCCEEECC---SSCCC------CCCTTTTTTCTTCCEEECCSSCCCCCC--
T ss_pred CCCCCEEECC---CCcCCCcCHHHhhCCcCCCEEECC---CCcCC------ccCHhHccCCCCCCEEECCCCCCCEeC--
Confidence 5677777763 366666666667777777777777 66211 222334566777777777777666532
Q ss_pred cCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 565 APGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 565 ~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
|..+.+++.| ..| ++..|+++.-.+.. ++.+++|+.|++++|..
T Consensus 121 -~~~~~~l~~L-------------~~L------~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 121 -VDAFQDLHNL-------------NLL------SLYDNKLQTIAKGT--FSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp -TTTTTTCTTC-------------CEE------ECCSSCCSCCCTTT--TTTCTTCCEEECCSSCE
T ss_pred -HHHcCCCCCC-------------CEE------ECCCCcCCEECHHH--HhCCCCCCEEEeCCCCc
Confidence 3334443332 223 22446666544443 77788899999998863
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.14 E-value=1.8e-06 Score=83.31 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=74.4
Q ss_pred CCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeee
Q 038791 416 DRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWI 495 (683)
Q Consensus 416 ~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 495 (683)
++|+.|+++.+.++.-.. ..+..+++|+.+.+..+. ++......+ ..+++|+.|+|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~------------------~~~~~l~~L~~L~Ls~N~---i~~~~~~~~-~~l~~L~~L~Ls- 88 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPP------------------GAFSPYKKLRRIDLSNNQ---ISELAPDAF-QGLRSLNSLVLY- 88 (220)
T ss_dssp TTCCEEECCSSCCCEECT------------------TSSTTCTTCCEEECCSSC---CCEECTTTT-TTCSSCCEEECC-
T ss_pred cCCCEEECCCCcCCCcCH------------------hHhhCCCCCCEEECCCCc---CCCcCHHHh-hCCcCCCEEECC-
Confidence 678999998544421100 123456677777775433 222212212 237899999974
Q ss_pred eccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccccccccee
Q 038791 496 EVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGY 561 (683)
Q Consensus 496 ~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~ 561 (683)
++.++.++...+.++++|++|+++ +|... ...+..+..+++|+.|+|+.|.+.+.
T Consensus 89 --~N~l~~l~~~~f~~l~~L~~L~L~---~N~l~------~~~~~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 89 --GNKITELPKSLFEGLFSLQLLLLN---ANKIN------CLRVDAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp --SSCCCCCCTTTTTTCTTCCEEECC---SSCCC------CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred --CCcCCccCHhHccCCCCCCEEECC---CCCCC------EeCHHHcCCCCCCCEEECCCCcCCEE
Confidence 488887777668899999999999 77321 23356788899999999999988764
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.14 E-value=2.9e-07 Score=85.44 Aligned_cols=133 Identities=14% Similarity=0.021 Sum_probs=89.6
Q ss_pred cCCCCcEEeecCCCCCCCCCCCCCCCCCccCCCCcCHHHHHHHHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcE
Q 038791 233 NCPKLTLLHLVDTSSLANERGDPDSDGFTAEDASVSREGLIQLFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKV 312 (683)
Q Consensus 233 ~~~~L~~L~L~~c~~l~~~~~~~~~~g~~~~~~~lt~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~ 312 (683)
.+++|++|+++++. ++. ++.+....++|+.|+++++ .+++ + .....+++|+.
T Consensus 17 ~~~~L~~L~l~~n~--------------------l~~--i~~~~~~~~~L~~L~Ls~N-~l~~----~-~~l~~l~~L~~ 68 (176)
T 1a9n_A 17 NAVRDRELDLRGYK--------------------IPV--IENLGATLDQFDAIDFSDN-EIRK----L-DGFPLLRRLKT 68 (176)
T ss_dssp CTTSCEEEECTTSC--------------------CCS--CCCGGGGTTCCSEEECCSS-CCCE----E-CCCCCCSSCCE
T ss_pred CcCCceEEEeeCCC--------------------Cch--hHHhhhcCCCCCEEECCCC-CCCc----c-cccccCCCCCE
Confidence 67899999998752 221 1222334569999999994 6654 2 22357899999
Q ss_pred EEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHH-HHHHhcCCCCcEEEecCCCCCCHHHH--HHHHHhccc
Q 038791 313 LKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGL-VAIGRGCRRLIKFELEGCKNVTVDGL--RTMAALRRE 389 (683)
Q Consensus 313 L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l-~~l~~~~~~L~~L~L~~c~~it~~~l--~~l~~~~~~ 389 (683)
|+++++.- .......+..+++|++|+++++. +++... ..+. .+++|+.|++++|. ++.... ..+...+ +
T Consensus 69 L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~-~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l-~ 140 (176)
T 1a9n_A 69 LLVNNNRI----CRIGEGLDQALPDLTELILTNNS-LVELGDLDPLA-SLKSLTYLCILRNP-VTNKKHYRLYVIYKV-P 140 (176)
T ss_dssp EECCSSCC----CEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGG-GCTTCCEEECCSSG-GGGSTTHHHHHHHHC-T
T ss_pred EECCCCcc----cccCcchhhcCCCCCEEECCCCc-CCcchhhHhhh-cCCCCCEEEecCCC-CCCcHhHHHHHHHHC-C
Confidence 99998532 11222334789999999999975 665332 2344 49999999999998 553221 1133445 9
Q ss_pred CccEEEeecccc
Q 038791 390 TLVEMKISCCKQ 401 (683)
Q Consensus 390 ~L~~L~l~~c~~ 401 (683)
+|+.|+++++..
T Consensus 141 ~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 141 QVRVLDFQKVKL 152 (176)
T ss_dssp TCSEETTEECCH
T ss_pred ccceeCCCcCCH
Confidence 999999998764
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.13 E-value=3e-07 Score=87.11 Aligned_cols=130 Identities=18% Similarity=0.123 Sum_probs=90.0
Q ss_pred HHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHH
Q 038791 275 LFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGL 354 (683)
Q Consensus 275 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l 354 (683)
.+..+++|++|+++++ .++.. + ....+++|+.|+++++.- ...+..+..+++|++|++++|. +++.
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l----~-~~~~l~~L~~L~l~~n~l-----~~l~~~~~~~~~L~~L~L~~N~-l~~l-- 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKI----S-SLSGMENLRILSLGRNLI-----KKIENLDAVADTLEELWISYNQ-IASL-- 108 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCC----C-CHHHHTTCCEEEEEEEEE-----CSCSSHHHHHHHCSEEEEEEEE-CCCH--
T ss_pred HHhcCCCCCEEECCCC-CCccc----c-ccccCCCCCEEECCCCCc-----ccccchhhcCCcCCEEECcCCc-CCcC--
Confidence 4566899999999984 66652 2 335689999999997532 1233445567899999999975 6663
Q ss_pred HHHHhcCCCCcEEEecCCCCCCHHHH-HHHHHhcccCccEEEeecccccCh-------hhHHHHHHhcCCCccEEE
Q 038791 355 VAIGRGCRRLIKFELEGCKNVTVDGL-RTMAALRRETLVEMKISCCKQLGA-------VASCKALDLVRDRIEKLH 422 (683)
Q Consensus 355 ~~l~~~~~~L~~L~L~~c~~it~~~l-~~l~~~~~~~L~~L~l~~c~~l~~-------~~~l~~l~~~~~~L~~L~ 422 (683)
..+.. +++|+.|++++|. +++... ..+. .+ ++|++|++++|+.... ..........+++|+.|+
T Consensus 109 ~~~~~-l~~L~~L~l~~N~-i~~~~~~~~l~-~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 109 SGIEK-LVNLRVLYMSNNK-ITNWGEIDKLA-AL-DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHH-HHHSSEEEESEEE-CCCHHHHHHHT-TT-TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred Ccccc-CCCCCEEECCCCc-CCchhHHHHHh-cC-CCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 35554 8889999999998 775433 4444 34 8999999998865322 111223355689999886
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.12 E-value=2e-06 Score=83.52 Aligned_cols=111 Identities=18% Similarity=0.092 Sum_probs=67.5
Q ss_pred CCccEEEEeeecCChhhHHHHhhhccccCcccCCcHHHHhhhhhhccccccCCCCccccccccccccccCCCCceeeeee
Q 038791 416 DRIEKLHIDCVWDGLELTESSESKVRSFDLNELNDEDDELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWI 495 (683)
Q Consensus 416 ~~L~~L~L~c~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 495 (683)
++|+.|+++.+.++... ...+..+++|+.+.+..+. ++....... ..+++|+.|+++
T Consensus 40 ~~L~~L~Ls~n~i~~~~------------------~~~~~~l~~L~~L~L~~N~---l~~i~~~~~-~~l~~L~~L~Ls- 96 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLE------------------PGVFDSLINLKELYLGSNQ---LGALPVGVF-DSLTQLTVLDLG- 96 (229)
T ss_dssp TTCSEEECCSSCCCCCC------------------TTTTTTCTTCCEEECCSSC---CCCCCTTTT-TTCTTCCEEECC-
T ss_pred CCCCEEEcCCCccCccC------------------HHHhhCccCCcEEECCCCC---CCCcChhhc-ccCCCcCEEECC-
Confidence 67888888744432110 0123456677777764433 111111111 236788888874
Q ss_pred eccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccccccccee
Q 038791 496 EVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGY 561 (683)
Q Consensus 496 ~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~ 561 (683)
+|.++.+....+.++++|++|+++ +|.... + +..+..+++|+.|+++.|.+.+.
T Consensus 97 --~N~l~~l~~~~~~~l~~L~~L~Ls---~N~l~~------l-p~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 97 --TNQLTVLPSAVFDRLVHLKELFMC---CNKLTE------L-PRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp --SSCCCCCCTTTTTTCTTCCEEECC---SSCCCS------C-CTTGGGCTTCSEEECCSSCCCCC
T ss_pred --CCcCCccChhHhCcchhhCeEecc---CCcccc------c-CcccccCCCCCEEECCCCcCCcc
Confidence 477777766667888888888888 773211 1 34567788888888888877753
No 136
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.11 E-value=1.9e-07 Score=97.61 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=54.7
Q ss_pred CCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHH
Q 038791 278 GLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAI 357 (683)
Q Consensus 278 ~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l 357 (683)
.+++|++|+|++ +.++... ...+..+++|+.|+|+++. .....+..+..+++|++|+|+++. ++......+
T Consensus 86 ~l~~L~~L~Ls~-N~l~~~~---~~~~~~l~~L~~L~L~~N~----i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 156 (361)
T 2xot_A 86 PVPNLRYLDLSS-NHLHTLD---EFLFSDLQALEVLLLYNNH----IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELI 156 (361)
T ss_dssp TCTTCCEEECCS-SCCCEEC---TTTTTTCTTCCEEECCSSC----CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGT
T ss_pred CCCCCCEEECCC-CcCCcCC---HHHhCCCcCCCEEECCCCc----ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHh
Confidence 455555555555 2343211 1122445666666666532 112223445566667777776653 443211111
Q ss_pred H--hcCCCCcEEEecCCCCCCHHHHHHHHHhcccC--ccEEEeeccccc
Q 038791 358 G--RGCRRLIKFELEGCKNVTVDGLRTMAALRRET--LVEMKISCCKQL 402 (683)
Q Consensus 358 ~--~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~--L~~L~l~~c~~l 402 (683)
. ..+++|+.|+|++|. ++......+... +. |+.|++.+|+..
T Consensus 157 ~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l--~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNK-LKKLPLTDLQKL--PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp C----CTTCCEEECCSSC-CCCCCHHHHHHS--CHHHHTTEECCSSCEE
T ss_pred cCcccCCcCCEEECCCCC-CCccCHHHhhhc--cHhhcceEEecCCCcc
Confidence 0 236677777777766 554333333332 33 366777766544
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.99 E-value=4.2e-06 Score=87.36 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=16.2
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecc
Q 038791 363 RLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCC 399 (683)
Q Consensus 363 ~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c 399 (683)
.++.|+|++|. ++......+...+ ++|+.|++++|
T Consensus 40 ~l~~L~Ls~N~-l~~l~~~~~~~~l-~~L~~L~L~~N 74 (361)
T 2xot_A 40 YTALLDLSHNN-LSRLRAEWTPTRL-TNLHSLLLSHN 74 (361)
T ss_dssp TCSEEECCSSC-CCEECTTSSSSCC-TTCCEEECCSS
T ss_pred CCCEEECCCCC-CCccChhhhhhcc-cccCEEECCCC
Confidence 46666666665 4432221111122 55555555544
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.92 E-value=5.1e-06 Score=94.93 Aligned_cols=65 Identities=18% Similarity=0.073 Sum_probs=46.4
Q ss_pred cCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceee
Q 038791 484 TWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYA 562 (683)
Q Consensus 484 ~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~ 562 (683)
.+++|+.|+|+ +|.++.+ +..+.++++|++|+|+ +|... .+ +..++.+++|+.|+|+.|.+.|..
T Consensus 268 ~l~~L~~L~Ls---~N~l~~l-p~~~~~l~~L~~L~L~---~N~l~------~l-p~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 268 NLSNLRVLDLS---HNRLTSL-PAELGSCFQLKYFYFF---DNMVT------TL-PWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp GGTTCCEEECT---TSCCSSC-CSSGGGGTTCSEEECC---SSCCC------CC-CSSTTSCTTCCCEECTTSCCCSHH
T ss_pred CCCCCCEEeCc---CCcCCcc-ChhhcCCCCCCEEECC---CCCCC------cc-ChhhhcCCCccEEeCCCCccCCCC
Confidence 36788888874 4777744 4457888889999998 77311 11 345788888999999888887743
No 139
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.89 E-value=3.6e-07 Score=89.02 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=37.5
Q ss_pred CCcCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhccccccc
Q 038791 3 ATTINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQRA 44 (683)
Q Consensus 3 ~~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~~ 44 (683)
+..|++||+||+.+||+|| +++|++++++||| |+.++.+..
T Consensus 2 ~~~l~~LP~ei~l~IlsfL-~p~DL~~l~~vcr~Wr~la~D~~ 43 (312)
T 3l2o_B 2 ASTLTRLPIDVQLYILSFL-SPHDLCQLGSTNHYWNETVRDPI 43 (312)
T ss_dssp CCHHHHSCHHHHHHHHHTS-CHHHHHHHHTTCHHHHHHHTCHH
T ss_pred cchhHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhccch
Confidence 4568899999999999999 9999999999999 999997655
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.89 E-value=3.8e-06 Score=79.02 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=31.2
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
+++|+.|+++ ++.++++....+.++++|++|+++ +|+.. ...+..+..+++|+.|+++.|.+.+
T Consensus 53 l~~L~~L~Ls---~N~l~~~~~~~~~~l~~L~~L~Ls---~N~l~------~~~~~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 53 LPHLVKLELK---RNQLTGIEPNAFEGASHIQELQLG---ENKIK------EISNKMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp CTTCCEEECC---SSCCCCBCTTTTTTCTTCCEEECC---SCCCC------EECSSSSTTCTTCCEEECCSSCCCE
T ss_pred CCCCCEEECC---CCCCCCcCHhHcCCcccCCEEECC---CCcCC------ccCHHHhcCCCCCCEEECCCCcCCe
Confidence 4555555542 355555444445555555555555 44211 1112334455555555555555554
No 141
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.88 E-value=0.00011 Score=68.32 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=51.9
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHh---cCCCCcEEEecCCCCCCHHHHHHHHHhcc--cCccEEEeeccc--ccChhh
Q 038791 334 LCGGLESLSIKNCGDLSDMGLVAIGR---GCRRLIKFELEGCKNVTVDGLRTMAALRR--ETLVEMKISCCK--QLGAVA 406 (683)
Q Consensus 334 ~~~~L~~L~L~~~~~lt~~~l~~l~~---~~~~L~~L~L~~c~~it~~~l~~l~~~~~--~~L~~L~l~~c~--~l~~~~ 406 (683)
.-+.|+.|+|++|. ++|.+..+++. .-+.|++|+|+.|. |++.|...++..+. +.|++|+|+++. .+++..
T Consensus 68 ~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 68 NSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp TCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred hCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 34566677777664 67776665553 23567777777776 77777777665532 557777776543 233211
Q ss_pred --HHHHHHhcCCCccEEEEe
Q 038791 407 --SCKALDLVRDRIEKLHID 424 (683)
Q Consensus 407 --~l~~l~~~~~~L~~L~L~ 424 (683)
.+......-+.|+.|+++
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHhCCCcCeEecc
Confidence 122222344677777776
No 142
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.84 E-value=7.6e-05 Score=69.44 Aligned_cols=125 Identities=15% Similarity=0.127 Sum_probs=92.1
Q ss_pred HHHHHHHhCCCCCcEEEeccccCcCCChh-HHHHHHhcCCCCcEEEecCcccccccccccccccc----cCCCCcEEEec
Q 038791 270 EGLIQLFSGLPLLEELVLDVCKNVRDSGP-VLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVS----LCGGLESLSIK 344 (683)
Q Consensus 270 ~~l~~l~~~~~~L~~L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~----~~~~L~~L~L~ 344 (683)
..+..+...-+.|++|+|++++.+.+.+. ++...+..-+.|+.|+|++|. ..+.+...++ .-+.|++|+|+
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~----igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA----ISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC----CBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC----CChHHHHHHHHHHhcCCccCeEecC
Confidence 45777777789999999987557877662 233334556799999999853 3344544544 56889999999
Q ss_pred cCCCCCHHHHHHHHhcC---CCCcEEEecCCC--CCCHHHHHHHHHhcc--cCccEEEeecc
Q 038791 345 NCGDLSDMGLVAIGRGC---RRLIKFELEGCK--NVTVDGLRTMAALRR--ETLVEMKISCC 399 (683)
Q Consensus 345 ~~~~lt~~~l~~l~~~~---~~L~~L~L~~c~--~it~~~l~~l~~~~~--~~L~~L~l~~c 399 (683)
++. |++.+..+++..+ +.|++|+|+++. .+++.+...++..+. ++|+.|+++.+
T Consensus 107 ~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 976 9999999998765 469999998763 478887665554321 88999999854
No 143
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.83 E-value=3.8e-06 Score=83.03 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=37.9
Q ss_pred CCCCcCCCCcHHHHHHHHhcCCCCCccc-hhhhhhh-hhccccccc
Q 038791 1 MAATTINNLPDRYARAELAVFSQPEVPL-AGEGHAH-LHHAPRQRA 44 (683)
Q Consensus 1 m~~~~i~~LP~eiL~~If~~L~~~~d~~-~~s~VCk-W~~~~~~~~ 44 (683)
|+...+..||+|++.+||+|| ++++++ +|++||| |+.++.+..
T Consensus 46 ~~~~~~~~LP~ell~~Il~~L-p~~~L~~r~~~VCk~Wr~l~~~~~ 90 (297)
T 2e31_A 46 EAVEYLAELPEPLLLRVLAEL-PATELVQACRLVCLRWKELVDGAP 90 (297)
T ss_dssp -CCCCTTSSCHHHHHHHHHTS-CHHHHHHTGGGTCHHHHHHHTSHH
T ss_pred ccccChhhCCHHHHHHHHHcC-CHHHHHHHHHHHhHHHHHHhcChH
Confidence 345789999999999999999 999999 9999999 999996543
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.74 E-value=6.4e-06 Score=76.24 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=67.0
Q ss_pred CCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHH
Q 038791 279 LPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIG 358 (683)
Q Consensus 279 ~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~ 358 (683)
.++|++|++++ +.++... ......+++|++|+++++. ........++.+++|++|+++++. ++......+
T Consensus 27 ~~~l~~L~l~~-n~l~~~~---~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~- 96 (177)
T 2o6r_A 27 PSSATRLELES-NKLQSLP---HGVFDKLTQLTKLSLSQNQ----IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVF- 96 (177)
T ss_dssp CTTCSEEECCS-SCCCCCC---TTTTTTCTTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT-
T ss_pred CCCCcEEEeCC-CcccEeC---HHHhcCcccccEEECCCCc----ceEeChhHccCCCccCEEECCCCC-ccccCHHHh-
Confidence 36788888887 4555432 2233567888888888742 212223345677888888888764 553222222
Q ss_pred hcCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccccCh
Q 038791 359 RGCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQLGA 404 (683)
Q Consensus 359 ~~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~l~~ 404 (683)
..+++|++|++++|. ++..... ....+ ++|++|++++|+...+
T Consensus 97 ~~l~~L~~L~l~~N~-l~~~~~~-~~~~l-~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 97 DKLTQLKELALDTNQ-LKSVPDG-IFDRL-TSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTCTTCCEEECCSSC-CSCCCTT-TTTTC-TTCCEEECCSSCBCCC
T ss_pred hCCcccCEEECcCCc-ceEeCHH-HhcCC-cccCEEEecCCCeecc
Confidence 236778888887776 5532211 11223 7777777777765543
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.73 E-value=3.9e-06 Score=78.98 Aligned_cols=108 Identities=17% Similarity=0.086 Sum_probs=61.0
Q ss_pred CCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEeccCCCCCHHHHHHHHh
Q 038791 280 PLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNCGDLSDMGLVAIGR 359 (683)
Q Consensus 280 ~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~~~lt~~~l~~l~~ 359 (683)
++|++|++++ +.++. ++..+..+++|+.|+++++ .........+..+++|++|+++++. ++......+.
T Consensus 31 ~~l~~L~L~~-n~i~~----ip~~~~~l~~L~~L~Ls~N----~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~- 99 (193)
T 2wfh_A 31 RDVTELYLDG-NQFTL----VPKELSNYKHLTLIDLSNN----RISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFD- 99 (193)
T ss_dssp TTCCEEECCS-SCCCS----CCGGGGGCTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTT-
T ss_pred CCCCEEECCC-CcCch----hHHHhhcccCCCEEECCCC----cCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhC-
Confidence 4688888877 45653 2233466778888888763 2222333456677777888777764 5543322333
Q ss_pred cCCCCcEEEecCCCCCCHHHHHHHHHhcccCccEEEeecccc
Q 038791 360 GCRRLIKFELEGCKNVTVDGLRTMAALRRETLVEMKISCCKQ 401 (683)
Q Consensus 360 ~~~~L~~L~L~~c~~it~~~l~~l~~~~~~~L~~L~l~~c~~ 401 (683)
.+++|+.|+|++|. ++......+. .+ ++|+.|++++++.
T Consensus 100 ~l~~L~~L~L~~N~-l~~~~~~~~~-~l-~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 100 GLKSLRLLSLHGND-ISVVPEGAFN-DL-SALSHLAIGANPL 138 (193)
T ss_dssp TCTTCCEEECCSSC-CCBCCTTTTT-TC-TTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCC-CCeeChhhhh-cC-ccccEEEeCCCCe
Confidence 26677777777766 4432111121 12 5666666665544
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.68 E-value=2e-05 Score=72.80 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=66.5
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
.++|+.|+++ ++.++.+....+.++++|++|+++ +|.-. .+.+..+..+++|+.|+++.|.+.+..
T Consensus 27 ~~~l~~L~l~---~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~------~~~~~~~~~l~~L~~L~l~~N~l~~~~-- 92 (177)
T 2o6r_A 27 PSSATRLELE---SNKLQSLPHGVFDKLTQLTKLSLS---QNQIQ------SLPDGVFDKLTKLTILYLHENKLQSLP-- 92 (177)
T ss_dssp CTTCSEEECC---SSCCCCCCTTTTTTCTTCSEEECC---SSCCC------CCCTTTTTTCTTCCEEECCSSCCCCCC--
T ss_pred CCCCcEEEeC---CCcccEeCHHHhcCcccccEEECC---CCcce------EeChhHccCCCccCEEECCCCCccccC--
Confidence 3678888863 466776666667788888888888 66311 222344677888888888888777532
Q ss_pred cCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccch
Q 038791 565 APGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTA 629 (683)
Q Consensus 565 ~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~ 629 (683)
|..+.+++.++.+++ ..|+++ .+|+ ..++.+++|+.|++++|.
T Consensus 93 -~~~~~~l~~L~~L~l-------------------~~N~l~-~~~~-~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 93 -NGVFDKLTQLKELAL-------------------DTNQLK-SVPD-GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp -TTTTTTCTTCCEEEC-------------------CSSCCS-CCCT-TTTTTCTTCCEEECCSSC
T ss_pred -HHHhhCCcccCEEEC-------------------cCCcce-EeCH-HHhcCCcccCEEEecCCC
Confidence 222334333222222 335555 3444 235667788888888776
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.67 E-value=1.6e-05 Score=74.79 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=66.8
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
.++|+.|++. ++.++.++ ..+.++++|+.|+++ +|... .+.+..+..+++|+.|+|+.|.+.+..
T Consensus 30 ~~~l~~L~L~---~n~i~~ip-~~~~~l~~L~~L~Ls---~N~i~------~i~~~~f~~l~~L~~L~Ls~N~l~~i~-- 94 (193)
T 2wfh_A 30 PRDVTELYLD---GNQFTLVP-KELSNYKHLTLIDLS---NNRIS------TLSNQSFSNMTQLLTLILSYNRLRCIP-- 94 (193)
T ss_dssp CTTCCEEECC---SSCCCSCC-GGGGGCTTCCEEECC---SSCCC------CCCTTTTTTCTTCCEEECCSSCCCBCC--
T ss_pred CCCCCEEECC---CCcCchhH-HHhhcccCCCEEECC---CCcCC------EeCHhHccCCCCCCEEECCCCccCEeC--
Confidence 3577888863 46666555 457778888888888 66311 223455777888888888888777632
Q ss_pred cCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchh
Q 038791 565 APGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAH 630 (683)
Q Consensus 565 ~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~ 630 (683)
|..+.+++.|+.+++ ..|+++. +|+ +.+..+++|+.|++++|..
T Consensus 95 -~~~f~~l~~L~~L~L-------------------~~N~l~~-~~~-~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 95 -PRTFDGLKSLRLLSL-------------------HGNDISV-VPE-GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp -TTTTTTCTTCCEEEC-------------------CSSCCCB-CCT-TTTTTCTTCCEEECCSSCE
T ss_pred -HHHhCCCCCCCEEEC-------------------CCCCCCe-eCh-hhhhcCccccEEEeCCCCe
Confidence 334444443333222 2355543 333 2366777888888888753
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.66 E-value=2.2e-06 Score=90.68 Aligned_cols=60 Identities=25% Similarity=0.196 Sum_probs=30.8
Q ss_pred HhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEecc
Q 038791 276 FSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKN 345 (683)
Q Consensus 276 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~ 345 (683)
+.+|++|+.+.+.. .+..-+ .....+|++|+.+.+..- +. .-....+..|..|+.+.+..
T Consensus 158 F~~c~~L~~i~l~~--~~~~I~---~~~F~~c~~L~~i~l~~~--~~---~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 158 FATCESLEYVSLPD--SMETLH---NGLFSGCGKLKSIKLPRN--LK---IIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEEC---TTTTTTCTTCCBCCCCTT--CC---EECTTTTTTCTTCCBCCCCT
T ss_pred hcccCCCcEEecCC--ccceec---cccccCCCCceEEEcCCC--ce---EeCchhhccccccceeecCC
Confidence 45677788877754 121110 112355777777776531 11 11223445667777666654
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.59 E-value=0.00011 Score=68.88 Aligned_cols=91 Identities=13% Similarity=-0.021 Sum_probs=54.7
Q ss_pred HhhhhhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCC
Q 038791 454 ELGLRKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPS 533 (683)
Q Consensus 454 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~ 533 (683)
+..+++|+.+.+..+. ++......++ .+++|+.|+++ +|.++++....+.++++|++|+++ +|...
T Consensus 50 ~~~l~~L~~L~Ls~N~---l~~~~~~~~~-~l~~L~~L~Ls---~N~l~~~~~~~~~~l~~L~~L~L~---~N~l~---- 115 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQ---LTGIEPNAFE-GASHIQELQLG---ENKIKEISNKMFLGLHQLKTLNLY---DNQIS---- 115 (192)
T ss_dssp GGGCTTCCEEECCSSC---CCCBCTTTTT-TCTTCCEEECC---SCCCCEECSSSSTTCTTCCEEECC---SSCCC----
T ss_pred cccCCCCCEEECCCCC---CCCcCHhHcC-CcccCCEEECC---CCcCCccCHHHhcCCCCCCEEECC---CCcCC----
Confidence 3455667776664333 2222222221 36778888763 477777666667777888888887 66211
Q ss_pred CccchhhhhccCcccccccccccccce
Q 038791 534 DRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 534 ~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
...+..+..+++|+.|+++.|.+.+
T Consensus 116 --~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 116 --CVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp --EECTTSSTTCTTCCEEECTTCCBCC
T ss_pred --eeCHHHhhcCCCCCEEEeCCCCccC
Confidence 2225566777778888887777665
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.38 E-value=1.9e-06 Score=91.11 Aligned_cols=120 Identities=15% Similarity=0.270 Sum_probs=68.8
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeecc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYALT 564 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~~ 564 (683)
+..++.+.... .. ++...+.+|++|+++.+. +. + ...+...+.+|++|+.+++..+ +.. .
T Consensus 275 ~~~l~~~~~~~---~~---i~~~~F~~~~~L~~i~l~---~~--i-----~~I~~~aF~~c~~L~~i~lp~~-v~~---I 334 (394)
T 4fs7_A 275 CSGLKKVIYGS---VI---VPEKTFYGCSSLTEVKLL---DS--V-----KFIGEEAFESCTSLVSIDLPYL-VEE---I 334 (394)
T ss_dssp CTTCCEEEECS---SE---ECTTTTTTCTTCCEEEEC---TT--C-----CEECTTTTTTCTTCCEECCCTT-CCE---E
T ss_pred ccccceeccCc---ee---eccccccccccccccccc---cc--c-----ceechhhhcCCCCCCEEEeCCc-ccE---E
Confidence 67777766421 22 233347889999999987 43 2 2556677889999999988432 111 0
Q ss_pred cCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchhhHHHHHHhcCCccc
Q 038791 565 APGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNVR 644 (683)
Q Consensus 565 ~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 644 (683)
....+.+++.| ..+.+ +.|.. +|+ .+.+.+|.+|+++.+..+-.. +-..|..+++|+
T Consensus 335 ~~~aF~~c~~L-------------~~i~l------p~~l~--~I~-~~aF~~C~~L~~i~lp~~~~~-~~~~F~~c~~L~ 391 (394)
T 4fs7_A 335 GKRSFRGCTSL-------------SNINF------PLSLR--KIG-ANAFQGCINLKKVELPKRLEQ-YRYDFEDTTKFK 391 (394)
T ss_dssp CTTTTTTCTTC-------------CEECC------CTTCC--EEC-TTTBTTCTTCCEEEEEGGGGG-GGGGBCTTCEEE
T ss_pred hHHhccCCCCC-------------CEEEE------Ccccc--Eeh-HHHhhCCCCCCEEEECCCCEE-hhheecCCCCCc
Confidence 12334444332 22222 11211 122 245889999999988766432 223466788887
Q ss_pred ccc
Q 038791 645 DVQ 647 (683)
Q Consensus 645 ~~~ 647 (683)
.|+
T Consensus 392 ~IK 394 (394)
T 4fs7_A 392 WIK 394 (394)
T ss_dssp EEC
T ss_pred EEC
Confidence 764
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.32 E-value=4.4e-05 Score=80.51 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=18.2
Q ss_pred CCcEEEecCcccccccccccccccccCCCCcEEEeccC
Q 038791 309 SLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKNC 346 (683)
Q Consensus 309 ~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~~ 346 (683)
+|+.+.+.. .+. .-+..++..|++|+.+++..+
T Consensus 158 ~L~~i~lp~--~l~---~I~~~aF~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 158 TVQEIVFPS--TLE---QLKEDIFYYCYNLKKADLSKT 190 (401)
T ss_dssp CCCEEECCT--TCC---EECSSTTTTCTTCCEEECTTS
T ss_pred CceEEEeCC--Ccc---EehHHHhhCcccCCeeecCCC
Confidence 577777753 121 122244556777777777653
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.27 E-value=3.7e-05 Score=87.80 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=77.2
Q ss_pred cCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccceeec
Q 038791 484 TWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGYAL 563 (683)
Q Consensus 484 ~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~~~ 563 (683)
.+++|+.|+|+ ++.++.++. .+.++++|++|+|+ +|... .+ +..+..+++|+.|+|+.|.+.
T Consensus 222 ~l~~L~~L~Ls---~n~l~~l~~-~~~~l~~L~~L~Ls---~N~l~------~l-p~~~~~l~~L~~L~Ls~N~l~---- 283 (727)
T 4b8c_D 222 DDQLWHALDLS---NLQIFNISA-NIFKYDFLTRLYLN---GNSLT------EL-PAEIKNLSNLRVLDLSHNRLT---- 283 (727)
T ss_dssp CCCCCCEEECT---TSCCSCCCG-GGGGCCSCSCCBCT---TSCCS------CC-CGGGGGGTTCCEEECTTSCCS----
T ss_pred cCCCCcEEECC---CCCCCCCCh-hhcCCCCCCEEEee---CCcCc------cc-ChhhhCCCCCCEEeCcCCcCC----
Confidence 46789999974 466664443 35588999999999 87311 11 456888999999999999877
Q ss_pred ccCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchhh
Q 038791 564 TAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHE 631 (683)
Q Consensus 564 ~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~~ 631 (683)
..|..+.+|+.|+.|+| ..|.++ +||.. ++.+++|+.|++++|.-.
T Consensus 284 ~lp~~~~~l~~L~~L~L-------------------~~N~l~-~lp~~--~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYF-------------------FDNMVT-TLPWE--FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCSSGGGGTTCSEEEC-------------------CSSCCC-CCCSS--TTSCTTCCCEECTTSCCC
T ss_pred ccChhhcCCCCCCEEEC-------------------CCCCCC-ccChh--hhcCCCccEEeCCCCccC
Confidence 33666666554333322 346665 78887 899999999999999854
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.16 E-value=0.00033 Score=64.07 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=36.2
Q ss_pred CCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 486 KGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 486 ~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
++|+.|+++ ++.++.+....+.++++|++|+++ +|+.. .+.+..+..+++|+.|+|+.|.+.+
T Consensus 30 ~~l~~L~L~---~N~i~~~~~~~~~~l~~L~~L~Ls---~N~l~------~l~~~~f~~l~~L~~L~L~~N~l~~ 92 (170)
T 3g39_A 30 TTTQVLYLY---DNQITKLEPGVFDRLTQLTRLDLD---NNQLT------VLPAGVFDKLTQLTQLSLNDNQLKS 92 (170)
T ss_dssp TTCSEEECC---SSCCCCCCTTTTTTCTTCSEEECC---SSCCC------CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcEEEcC---CCcCCccChhhhcCcccCCEEECC---CCCcC------ccChhhccCCCCCCEEECCCCccCE
Confidence 566666653 366666655556666677777776 55211 1223345566666666666666554
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.14 E-value=4.8e-05 Score=80.24 Aligned_cols=15 Identities=27% Similarity=0.691 Sum_probs=8.8
Q ss_pred HhhcCCCCCEEEeeC
Q 038791 140 LFEHCECLKSIDLSN 154 (683)
Q Consensus 140 ~~~~~~~L~~L~Ls~ 154 (683)
.+.+|.+|+++.+..
T Consensus 82 AF~~C~~L~~i~~~~ 96 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQD 96 (394)
T ss_dssp TTTTCTTCCEEEEGG
T ss_pred HhhCCccCceEeecC
Confidence 345666666666654
No 155
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.04 E-value=7.8e-05 Score=80.14 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=35.7
Q ss_pred CCcCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhccccc
Q 038791 3 ATTINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQ 42 (683)
Q Consensus 3 ~~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~ 42 (683)
.+.|..||+|++.+||+|| ++++++++++||| |++++.+
T Consensus 12 ~d~~~~lp~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 12 RDLITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCHHHHSCHHHHHHHHTTS-CHHHHHHHHTTCHHHHHHHTT
T ss_pred cCChHHCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcC
Confidence 3567889999999999999 9999999999999 9999864
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.00 E-value=0.0002 Score=75.39 Aligned_cols=60 Identities=10% Similarity=-0.004 Sum_probs=30.3
Q ss_pred HhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCcccccccccccccccccCCCCcEEEecc
Q 038791 276 FSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIGWQLDGVSLCGGLESLSIKN 345 (683)
Q Consensus 276 ~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~l~~~~~L~~L~L~~ 345 (683)
+.+|++|+.+++.. +.++.-+ .-.-.+.+|+.+.+.. .+. .-...++..|++|+.+.+..
T Consensus 176 F~~c~~L~~l~l~~-n~l~~I~----~~aF~~~~L~~l~lp~--~l~---~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 176 FYYCYNLKKADLSK-TKITKLP----ASTFVYAGIEEVLLPV--TLK---EIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTCTTCCEEECTT-SCCSEEC----TTTTTTCCCSEEECCT--TCC---EECTTTTTTCTTCCCEECCT
T ss_pred hhCcccCCeeecCC-CcceEec----hhhEeecccCEEEeCC--chh---eehhhHhhCCCCCCEEecCC
Confidence 44577777777764 2333211 0011256777777753 111 12223455666666666654
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.92 E-value=0.00044 Score=63.57 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=34.5
Q ss_pred CCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccccccccce
Q 038791 486 KGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 486 ~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
++|+.|+++ ++.++.+....+.++++|++|+++ +|+.. .+.+..+..+++|+.|+|+.|.+.+
T Consensus 33 ~~L~~L~Ls---~N~l~~~~~~~~~~l~~L~~L~Ls---~N~l~------~i~~~~~~~l~~L~~L~L~~N~l~~ 95 (174)
T 2r9u_A 33 TDKQRLWLN---NNQITKLEPGVFDHLVNLQQLYFN---SNKLT------AIPTGVFDKLTQLTQLDLNDNHLKS 95 (174)
T ss_dssp TTCSEEECC---SSCCCCCCTTTTTTCTTCCEEECC---SSCCC------CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcEEEeC---CCCccccCHHHhcCCcCCCEEECC---CCCCC------ccChhHhCCcchhhEEECCCCccce
Confidence 556666653 355655555556666666666666 55211 1112334556666666666665554
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.91 E-value=0.00039 Score=73.24 Aligned_cols=121 Identities=12% Similarity=0.236 Sum_probs=65.5
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccccc-ccceeec
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFG-ETIGYAL 563 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~g~~~ 563 (683)
|.+|+.+.+ .+.++.++...+.+|++|+++.+. .. ....+...+.+|++|+.+.|..+ ..+|
T Consensus 264 c~~L~~i~l----p~~~~~I~~~aF~~c~~L~~i~l~---~~-------i~~I~~~aF~~c~~L~~i~lp~~v~~I~--- 326 (394)
T 4gt6_A 264 CAYLASVKM----PDSVVSIGTGAFMNCPALQDIEFS---SR-------ITELPESVFAGCISLKSIDIPEGITQIL--- 326 (394)
T ss_dssp CSSCCEEEC----CTTCCEECTTTTTTCTTCCEEECC---TT-------CCEECTTTTTTCTTCCEEECCTTCCEEC---
T ss_pred cccccEEec----ccccceecCcccccccccccccCC---Cc-------ccccCceeecCCCCcCEEEeCCcccEeh---
Confidence 667777664 233344444456777777777775 22 11344566777888888877432 1111
Q ss_pred ccCCCCCCchhhHHHhhcccceeeeccccCCCCCCcCccCcccCcccchHHHHhhhhhhhhhccchhhHHHHHHhcCCcc
Q 038791 564 TAPGGETDLTLWDRFFFNGIGNLRLNELDYWPAQDRDVNQRSLTLPASGLIAQCLTLRKLIIHGTAHEHFMMFFTRMPNV 643 (683)
Q Consensus 564 ~~p~~~~~l~~l~~~~l~~~~~l~l~~l~~~~~~~~~~n~~~~~~p~~~~l~~~~~L~~l~~~~~~~~~~~~~~~~~~~~ 643 (683)
...+.+++ +| ..+.+ | .+.. +|+ .+.+.+|.+|+.+.+.++.. ....+..+.+|
T Consensus 327 --~~aF~~C~-----------~L--~~i~i-p-----~sv~--~I~-~~aF~~C~~L~~i~~~~~~~--~~~~~~~~~~L 380 (394)
T 4gt6_A 327 --DDAFAGCE-----------QL--ERIAI-P-----SSVT--KIP-ESAFSNCTALNNIEYSGSRS--QWNAISTDSGL 380 (394)
T ss_dssp --TTTTTTCT-----------TC--CEEEE-C-----TTCC--BCC-GGGGTTCTTCCEEEESSCHH--HHHTCBCCCCC
T ss_pred --HhHhhCCC-----------CC--CEEEE-C-----cccC--EEh-HhHhhCCCCCCEEEECCcee--ehhhhhccCCC
Confidence 12233333 22 22211 1 1111 122 34699999999999998854 45677888888
Q ss_pred ccccc
Q 038791 644 RDVQL 648 (683)
Q Consensus 644 ~~~~~ 648 (683)
+.|.+
T Consensus 381 ~~i~i 385 (394)
T 4gt6_A 381 QNLPV 385 (394)
T ss_dssp -----
T ss_pred CEEEe
Confidence 88764
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.89 E-value=0.00064 Score=62.16 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=61.0
Q ss_pred hhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccc
Q 038791 458 RKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAF 537 (683)
Q Consensus 458 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~ 537 (683)
++++.+.+..+. ++......++ .+++|+.|+|+ +|.++.++...+.++++|+.|+++ +|+-. .+
T Consensus 30 ~~l~~L~L~~N~---i~~~~~~~~~-~l~~L~~L~Ls---~N~l~~l~~~~f~~l~~L~~L~L~---~N~l~------~~ 93 (170)
T 3g39_A 30 TTTQVLYLYDNQ---ITKLEPGVFD-RLTQLTRLDLD---NNQLTVLPAGVFDKLTQLTQLSLN---DNQLK------SI 93 (170)
T ss_dssp TTCSEEECCSSC---CCCCCTTTTT-TCTTCSEEECC---SSCCCCCCTTTTTTCTTCCEEECC---SSCCC------CC
T ss_pred CCCcEEEcCCCc---CCccChhhhc-CcccCCEEECC---CCCcCccChhhccCCCCCCEEECC---CCccC------Ee
Confidence 567777764433 2222222222 37899999984 488888877778899999999999 77321 22
Q ss_pred hhhhhccCcccccccccccccce
Q 038791 538 GLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 538 ~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
.+..+..+++|+.|+|+.|.+.+
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCT
T ss_pred CHHHhcCCCCCCEEEeCCCCCCC
Confidence 34457889999999999997765
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.84 E-value=0.0016 Score=64.00 Aligned_cols=16 Identities=38% Similarity=0.343 Sum_probs=8.2
Q ss_pred hcCCCCCEEEeeCccc
Q 038791 142 EHCECLKSIDLSNFYF 157 (683)
Q Consensus 142 ~~~~~L~~L~Ls~~~~ 157 (683)
..+++|++|+|++|.+
T Consensus 167 ~~l~~L~~L~Ls~N~l 182 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRL 182 (267)
T ss_dssp HHCTTCCEEECTTSCC
T ss_pred hhCCCCCEEECCCCCC
Confidence 3455555555555544
No 161
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.83 E-value=0.00075 Score=61.95 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=60.5
Q ss_pred hhhccccccCCCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccc
Q 038791 458 RKKRKFCLPEGGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAF 537 (683)
Q Consensus 458 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~ 537 (683)
++++.+.+..+. ++......+ ..+++|+.|+|+ +|.++.++...+.++++|+.|+++ +|... .+
T Consensus 33 ~~L~~L~Ls~N~---l~~~~~~~~-~~l~~L~~L~Ls---~N~l~~i~~~~~~~l~~L~~L~L~---~N~l~------~l 96 (174)
T 2r9u_A 33 TDKQRLWLNNNQ---ITKLEPGVF-DHLVNLQQLYFN---SNKLTAIPTGVFDKLTQLTQLDLN---DNHLK------SI 96 (174)
T ss_dssp TTCSEEECCSSC---CCCCCTTTT-TTCTTCCEEECC---SSCCCCCCTTTTTTCTTCCEEECC---SSCCC------CC
T ss_pred CCCcEEEeCCCC---ccccCHHHh-cCCcCCCEEECC---CCCCCccChhHhCCcchhhEEECC---CCccc------ee
Confidence 577777775433 222222222 247899999984 488888777667899999999999 77321 22
Q ss_pred hhhhhccCcccccccccccccce
Q 038791 538 GLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 538 ~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
.+..+..+++|+.|+++.|.+..
T Consensus 97 ~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CTTTTTTCTTCSEEECCSSCBCT
T ss_pred CHHHhccccCCCEEEeCCCCccc
Confidence 24457889999999999887664
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.69 E-value=0.00055 Score=70.62 Aligned_cols=66 Identities=23% Similarity=0.199 Sum_probs=48.3
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccccccccee
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLEFGETIGY 561 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~g~ 561 (683)
+++|+.|+|+ ..|.++.+....+.++++|+.|+|+ +|. ++ .+.+..+.++++|+.|+|+.|.+.+.
T Consensus 30 ~~~L~~L~l~--~~n~l~~~~~~~~~~l~~L~~L~l~---~N~-l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 30 AENLTELYIE--NQQHLQHLELRDLRGLGELRNLTIV---KSG-LR-----FVAPDAFHFTPRLSRLNLSFNALESL 95 (347)
T ss_dssp CSCCSEEECC--SCSSCCEECGGGSCSCCCCSEEECC---SSC-CC-----EECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred CCCeeEEEcc--CCCCCCCcChhHhccccCCCEEECC---CCc-cc-----eeCHHHhcCCcCCCEEeCCCCcccee
Confidence 5678888863 1378877777778888889999888 772 11 23355678888888888888887753
No 163
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.65 E-value=0.00043 Score=73.96 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=35.9
Q ss_pred CCcCCCCcHHHHHHHHhcCCCCCccchhhhhhh-hhccccc
Q 038791 3 ATTINNLPDRYARAELAVFSQPEVPLAGEGHAH-LHHAPRQ 42 (683)
Q Consensus 3 ~~~i~~LP~eiL~~If~~L~~~~d~~~~s~VCk-W~~~~~~ 42 (683)
.+.++.||+|++.+||+|| +++|++++++||| |+.++.+
T Consensus 16 ~d~~~~lp~e~~~~i~~~l-~~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTS-CHHHHHHHTTSCHHHHHHHTC
T ss_pred CChhHHCCHHHHHHHHHhC-CHHHHHHHHHHhHHHHhhcCc
Confidence 3568899999999999999 9999999999999 9999854
No 164
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.55 E-value=0.00024 Score=75.71 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=35.8
Q ss_pred CCcCCCCcHH----HHHHHHhcCCCCCccchhhhhhh-hhcccccc
Q 038791 3 ATTINNLPDR----YARAELAVFSQPEVPLAGEGHAH-LHHAPRQR 43 (683)
Q Consensus 3 ~~~i~~LP~e----iL~~If~~L~~~~d~~~~s~VCk-W~~~~~~~ 43 (683)
.+.+..||+| |+.+||+|| ++++++++++||| |++++.+.
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~~ 52 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTSDG 52 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHHHT
T ss_pred cChHHHCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCh
Confidence 3567789999 999999999 9999999999999 99998643
No 165
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.33 E-value=0.0086 Score=58.70 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=48.9
Q ss_pred HHhCCCCCcEEEeccccCcCCChhHHHHHHhcCCCCcEEEecCccccccccc-ccccccccCCCCcEEEeccCCCCCH--
Q 038791 275 LFSGLPLLEELVLDVCKNVRDSGPVLEVLKSKCSSLKVLKLGQFHGVCLAIG-WQLDGVSLCGGLESLSIKNCGDLSD-- 351 (683)
Q Consensus 275 l~~~~~~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~-~~~~~l~~~~~L~~L~L~~~~~lt~-- 351 (683)
+...+++|+.|+|++ +.++.-.. ++.....+++|+.|+|++. ...+ ..+..+..+ +|++|++.+++ +++
T Consensus 165 ~~~~l~~L~~L~Ls~-N~l~~l~~-l~~~~~~l~~L~~L~Ls~N----~i~~~~~l~~l~~l-~L~~L~L~~Np-l~~~~ 236 (267)
T 3rw6_A 165 IEENIPELLSLNLSN-NRLYRLDD-MSSIVQKAPNLKILNLSGN----ELKSERELDKIKGL-KLEELWLDGNS-LCDTF 236 (267)
T ss_dssp HHHHCTTCCEEECTT-SCCCCCGG-GTTHHHHSTTCCEEECTTS----CCCSGGGGGGGTTS-CCSEEECTTST-TGGGC
T ss_pred HHhhCCCCCEEECCC-CCCCCCcc-chhHHhhCCCCCEEECCCC----ccCCchhhhhcccC-CcceEEccCCc-Ccccc
Confidence 335688888888888 56765321 3445567888888888762 2211 122223333 77777777765 442
Q ss_pred ----HHHHHHHhcCCCCcEEE
Q 038791 352 ----MGLVAIGRGCRRLIKFE 368 (683)
Q Consensus 352 ----~~l~~l~~~~~~L~~L~ 368 (683)
.-...+...+|+|+.|+
T Consensus 237 ~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEES
T ss_pred CcchhHHHHHHHHCcccCeEC
Confidence 11223334467777665
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.00 E-value=0.0045 Score=63.60 Aligned_cols=90 Identities=14% Similarity=0.049 Sum_probs=55.0
Q ss_pred HhhhhhhccccccC-CCCccccccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCC
Q 038791 454 ELGLRKKRKFCLPE-GGNWHLQIKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKP 532 (683)
Q Consensus 454 ~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~ 532 (683)
+..+++|+.|.+.. +. ++......+ ..+++|+.|+|+ +|.++++....+.++++|++|+|+ +|...
T Consensus 27 l~~~~~L~~L~l~~~n~---l~~~~~~~~-~~l~~L~~L~l~---~N~l~~~~~~~~~~l~~L~~L~l~---~N~l~--- 93 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH---LQHLELRDL-RGLGELRNLTIV---KSGLRFVAPDAFHFTPRLSRLNLS---FNALE--- 93 (347)
T ss_dssp SCSCSCCSEEECCSCSS---CCEECGGGS-CSCCCCSEEECC---SSCCCEECTTGGGSCSCCCEEECC---SSCCS---
T ss_pred CCCCCCeeEEEccCCCC---CCCcChhHh-ccccCCCEEECC---CCccceeCHHHhcCCcCCCEEeCC---CCccc---
Confidence 44556677777742 32 221121112 237888888874 478888777777888999999998 77322
Q ss_pred CCccchhhhhccCcccccccccccccce
Q 038791 533 SDRAFGLSCLTRYPQLTKLRLEFGETIG 560 (683)
Q Consensus 533 ~~~~~~~~~l~~l~~L~~L~l~~~~~~g 560 (683)
.+.+..+..++ |+.|+|..|.+..
T Consensus 94 ---~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 94 ---SLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp ---CCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ---eeCHHHcccCC-ceEEEeeCCCccC
Confidence 11122333344 8888888877654
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.47 E-value=0.73 Score=47.46 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=27.2
Q ss_pred CCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCcccccccc
Q 038791 485 WKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRL 553 (683)
Q Consensus 485 ~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l 553 (683)
+.+|+.+.+ ...++.++...+.+|++|+++.+. ++. + ..++...+.+|++|+.+.|
T Consensus 262 ~~~l~~i~l----~~~i~~i~~~aF~~c~~L~~i~l~---~~~-i-----~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 262 CTALKTLNF----YAKVKTVPYLLCSGCSNLTKVVMD---NSA-I-----ETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CTTCCEEEE----CCCCSEECTTTTTTCTTCCEEEEC---CTT-C-----CEECTTTTTTCTTCCEEEC
T ss_pred eehhccccc----cccceecccccccccccccccccc---ccc-c-----ceehhhhhcCCCCCCEEEc
Confidence 455555553 123333444445566666666665 321 1 1233445555666665555
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=75.23 E-value=4.8 Score=41.16 Aligned_cols=58 Identities=10% Similarity=0.164 Sum_probs=41.2
Q ss_pred cCCCCceeeeeeeccccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccc
Q 038791 484 TWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLE 554 (683)
Q Consensus 484 ~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 554 (683)
.|.+|+.+.+. .+.++.++...+.+|++|+++.|. +. + ..++..++.+|++|+.+.+.
T Consensus 284 ~c~~L~~i~l~---~~~i~~I~~~aF~~c~~L~~i~lp---~~--l-----~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMD---NSAIETLEPRVFMDCVKLSSVTLP---TA--L-----KTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEEC---CTTCCEECTTTTTTCTTCCEEECC---TT--C-----CEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccc---ccccceehhhhhcCCCCCCEEEcC---cc--c-----cEEHHHHhhCCCCCCEEEEC
Confidence 37888888852 345666666668889999998886 32 1 24556678888888888773
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.01 E-value=9.4 Score=30.58 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=21.3
Q ss_pred ccCCCccccCCCCCCCcceeeecccCCCCCCCCCCCccchhhhhccCccccccccc
Q 038791 499 QLLTPLPIVGLDDCPVLEEIRIKMEGDSRGRQKPSDRAFGLSCLTRYPQLTKLRLE 554 (683)
Q Consensus 499 ~~l~~~~~~~L~~~~~L~~L~l~~~~~c~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 554 (683)
+.++.+....+.+|++|+++.|- +. ...++-..+.+|.+|+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP---~~-------v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQ---PN-------IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEEC---TT-------SSCCCTTSSTTCTTCCCEEEC
T ss_pred CccCEecHHHhcCCCCCcEEEcC---Cc-------hheEcHHHHhccCCccEEEEc
Confidence 34444444445555555555554 21 113334445555555555543
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.96 E-value=32 Score=27.36 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=31.8
Q ss_pred ccccccccccCCCCceeeeeeeccccCCCccccCCCCCCCcceeeec
Q 038791 475 IKENGVCCKTWKGLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIK 521 (683)
Q Consensus 475 ~~~~~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~ 521 (683)
.....+.+ |.+|+.+.+ -..++.++...+.+|.+|+++.+.
T Consensus 11 I~~~aF~~--c~~L~~i~i----P~~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 11 MDKSLFAG--NTVIREITV----QPNIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCSCTTTT--CTTCCCEEE----CTTSSCCCTTSSTTCTTCCCEEEC
T ss_pred ecHHHhcC--CCCCcEEEc----CCchheEcHHHHhccCCccEEEEc
Confidence 33444455 899999885 356777777779999999999998
No 171
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=41.78 E-value=16 Score=30.73 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=16.2
Q ss_pred CCCEEEeeCccccCCChhHHHhhcCccCCCccEEEeccCC
Q 038791 146 CLKSIDLSNFYFWTEDLPPVLRAYPEKSANLTCLNLLTTS 185 (683)
Q Consensus 146 ~L~~L~Ls~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 185 (683)
+|+.|+|++|.+.. --+..+..++ +|+.|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~-l~~~~f~~l~----~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-LPPGLLDALP----ALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSS-CCTTTGGGCT----TCCEEECCSSC
T ss_pred CCCEEECCCCcCCc-cChhhhhhcc----ccCEEEecCCC
Confidence 46666666654421 1111122333 56666666554
No 172
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=36.13 E-value=19 Score=30.35 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=16.5
Q ss_pred CCceeeeeeeccccCCCccccCCCCCCCcceeeec
Q 038791 487 GLKCLSIWIEVGQLLTPLPIVGLDDCPVLEEIRIK 521 (683)
Q Consensus 487 ~L~~L~L~~~~~~~l~~~~~~~L~~~~~L~~L~l~ 521 (683)
+|+.|+| .+|.|+.+....+..+++|+.|+|.
T Consensus 32 ~l~~L~L---s~N~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 32 DTTELVL---TGNNLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp TCSEEEC---TTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred CCCEEEC---CCCcCCccChhhhhhccccCEEEec
Confidence 4555554 2355555544444555555555555
Done!