Query 038792
Match_columns 148
No_of_seqs 156 out of 1034
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14368 LTP_2: Probable lipid 99.6 1.7E-17 3.6E-22 115.5 -0.2 80 24-106 14-96 (96)
2 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 2.9E-14 6.2E-19 92.9 2.2 61 36-99 1-63 (63)
3 cd01959 nsLTP2 nsLTP2: Non-spe 99.4 4.3E-14 9.4E-19 94.2 2.3 63 32-102 1-64 (66)
4 cd04660 nsLTP_like nsLTP_like: 99.4 6.1E-14 1.3E-18 94.7 2.9 65 34-106 6-73 (73)
5 cd01960 nsLTP1 nsLTP1: Non-spe 99.4 2.4E-13 5.3E-18 94.6 2.8 69 31-103 2-80 (89)
6 smart00499 AAI Plant lipid tra 98.9 1.4E-09 3E-14 71.6 3.2 67 35-106 7-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.4 4.8E-09 1E-13 72.3 -5.4 67 34-103 13-87 (90)
8 PF14547 Hydrophob_seed: Hydro 91.1 0.14 3E-06 35.7 1.7 67 35-104 8-81 (85)
9 cd01958 HPS_like HPS_like: Hyd 90.4 0.17 3.7E-06 35.4 1.6 64 35-104 10-82 (85)
10 PF07172 GRP: Glycine rich pro 81.7 1.4 3.1E-05 31.2 2.5 13 1-13 1-13 (95)
11 cd00261 AAI_SS AAI_SS: Alpha-A 63.1 1.7 3.7E-05 30.6 -0.8 69 35-107 14-109 (110)
12 TIGR01165 cbiN cobalt transpor 35.2 39 0.00084 23.9 2.5 18 1-18 1-18 (91)
13 PF15284 PAGK: Phage-encoded v 29.7 47 0.001 21.8 2.0 21 1-21 1-21 (61)
14 PRK10081 entericidin B membran 25.8 1E+02 0.0022 19.3 2.9 15 4-18 3-17 (48)
15 PF10176 DUF2370: Protein of u 21.2 78 0.0017 26.0 2.3 20 122-141 83-102 (233)
No 1
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.64 E-value=1.7e-17 Score=115.53 Aligned_cols=80 Identities=41% Similarity=0.835 Sum_probs=51.8
Q ss_pred cccccccchhhccccc---hhhhcCCCCCCccchhhhhhccCCCCccccccccCccccccccCCCCHHHHhhccccCCCC
Q 038792 24 GTWAQSTYCLNRLAPC---LRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNRGSRRAEEAGINVSAAQELPGKCGQR 100 (148)
Q Consensus 24 ~~a~~~~~C~~~L~pC---l~yv~g~~~P~~~CC~~lk~l~~~~~~ClC~~lk~~~~~~~~~~~in~~~a~~LP~~Cgv~ 100 (148)
..+....+|..+|.+| +.|++++.+|++.||+++|++.+.++.|+|+++++.. ...++||.+|+..||++||++
T Consensus 14 ~~~~~~~~c~~~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~---~~~~~in~~~a~~Lp~~Cg~~ 90 (96)
T PF14368_consen 14 PAAACCCSCANSLLPCCPCLCYVTGGPAPSAACCSALKSVVQADPPCLCQLLNSPG---APGFGINVTRALALPAACGVP 90 (96)
T ss_dssp ----BTTB-HCCCCHH--HHHHHCC-----HHHHHHHCC----HCCHHHCCCC-CC---HCHHCCTCHHHHHHHHHCTSS
T ss_pred cCCCCcchhHHHHhccccchhccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCccc---cccCCcCHHHHHHHHHHcCCC
Confidence 3444556787788888 7888877789999999999998888999999888753 234789999999999999999
Q ss_pred CCCCCC
Q 038792 101 VNPLGC 106 (148)
Q Consensus 101 ~p~~~C 106 (148)
.|++.|
T Consensus 91 ~~~~~C 96 (96)
T PF14368_consen 91 VPPSKC 96 (96)
T ss_dssp -S----
T ss_pred CCCCCC
Confidence 987555
No 2
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.45 E-value=2.9e-14 Score=92.85 Aligned_cols=61 Identities=46% Similarity=1.011 Sum_probs=51.9
Q ss_pred cccchhhhcCC-CCCCccchhhhhhccCCCCccccccccCccccccccCCC-CHHHHhhccccCCC
Q 038792 36 LAPCLRYLNGS-RDVPDSCCDPLKSVIKDNPECLCSMISNRGSRRAEEAGI-NVSAAQELPGKCGQ 99 (148)
Q Consensus 36 L~pCl~yv~g~-~~P~~~CC~~lk~l~~~~~~ClC~~lk~~~~~~~~~~~i-n~~~a~~LP~~Cgv 99 (148)
|.||++|++|+ .+|++.||++++++.+.++.|+|+++++... ...++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~---~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGA---SLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccc---cccCcccHHHHHhchHhcCC
Confidence 57999999987 4788999999999998889999999987632 22345 79999999999996
No 3
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.44 E-value=4.3e-14 Score=94.25 Aligned_cols=63 Identities=29% Similarity=0.645 Sum_probs=53.5
Q ss_pred hh-hccccchhhhcCCCCCCccchhhhhhccCCCCccccccccCccccccccCCCCHHHHhhccccCCCCCC
Q 038792 32 CL-NRLAPCLRYLNGSRDVPDSCCDPLKSVIKDNPECLCSMISNRGSRRAEEAGINVSAAQELPGKCGQRVN 102 (148)
Q Consensus 32 C~-~~L~pCl~yv~g~~~P~~~CC~~lk~l~~~~~~ClC~~lk~~~~~~~~~~~in~~~a~~LP~~Cgv~~p 102 (148)
|+ .+|.+|++|++++.+||.+||+.+|+ +..|||.|++++.. +. .||.++|++||++||+++|
T Consensus 1 c~~~~L~~C~~ai~~~~~Ps~~CC~~Lk~----~~~CLC~y~~~p~l---~~-~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 1 CNPTQLSPCLPAILGGSPPSAACCAKLKE----QQSCLCQYAKNPSL---KQ-YVNSPNARKVLAACGVPYP 64 (66)
T ss_pred CChhhcccCHHHHhCCCCCCHHHHHHHhc----CCCCeeeeecCccH---Hh-hcCcHHHHHHHHHcCCCCC
Confidence 44 57999999999888899999999998 35899999888642 23 4999999999999999986
No 4
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.43 E-value=6.1e-14 Score=94.68 Aligned_cols=65 Identities=31% Similarity=0.641 Sum_probs=52.2
Q ss_pred hccccchhhhcCCC---CCCccchhhhhhccCCCCccccccccCccccccccCCCCHHHHhhccccCCCCCCCCCC
Q 038792 34 NRLAPCLRYLNGSR---DVPDSCCDPLKSVIKDNPECLCSMISNRGSRRAEEAGINVSAAQELPGKCGQRVNPLGC 106 (148)
Q Consensus 34 ~~L~pCl~yv~g~~---~P~~~CC~~lk~l~~~~~~ClC~~lk~~~~~~~~~~~in~~~a~~LP~~Cgv~~p~~~C 106 (148)
..|.||++|+++++ +|++.||+++|++ +..|+|.+++... ...||.++|.+||++||+++|++.|
T Consensus 6 ~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~~~-----~~~i~~~~a~~Lp~~Cgv~~p~~~C 73 (73)
T cd04660 6 DLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTSLV-----LQIIDPDKAVYLPAKCGLPLPPSSC 73 (73)
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCCCc-----ccccCHHHHHHHHHHcCCCCCCCCC
Confidence 46889999999765 4778999999985 4569998766431 2359999999999999999987445
No 5
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.37 E-value=2.4e-13 Score=94.56 Aligned_cols=69 Identities=33% Similarity=0.666 Sum_probs=53.3
Q ss_pred chh---hccccchhhhcCCC-CCCccchhhhhhccCC-----CCccccccccCccccccccC-CCCHHHHhhccccCCCC
Q 038792 31 YCL---NRLAPCLRYLNGSR-DVPDSCCDPLKSVIKD-----NPECLCSMISNRGSRRAEEA-GINVSAAQELPGKCGQR 100 (148)
Q Consensus 31 ~C~---~~L~pCl~yv~g~~-~P~~~CC~~lk~l~~~-----~~~ClC~~lk~~~~~~~~~~-~in~~~a~~LP~~Cgv~ 100 (148)
+|. ..|.||++|++|+. .|+++||++++++++. +..|+|..+++.. ..+ +||.+||.+||++||++
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~----~~~~~i~~~~a~~LP~~C~v~ 77 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAA----AGISGLNPGRAAGLPGKCGVS 77 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccc----cccCCCCHHHHHhChHhcccC
Confidence 465 56899999999865 7889999999998753 3356665556531 234 49999999999999999
Q ss_pred CCC
Q 038792 101 VNP 103 (148)
Q Consensus 101 ~p~ 103 (148)
.+.
T Consensus 78 ~~~ 80 (89)
T cd01960 78 IPY 80 (89)
T ss_pred CCC
Confidence 765
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.88 E-value=1.4e-09 Score=71.62 Aligned_cols=67 Identities=31% Similarity=0.686 Sum_probs=51.6
Q ss_pred ccccchhhhcCC---CCCCccchhhhhhccCCCCccccccccCccccccccC---CCCHHHHhhccccCCCCCCCCCC
Q 038792 35 RLAPCLRYLNGS---RDVPDSCCDPLKSVIKDNPECLCSMISNRGSRRAEEA---GINVSAAQELPGKCGQRVNPLGC 106 (148)
Q Consensus 35 ~L~pCl~yv~g~---~~P~~~CC~~lk~l~~~~~~ClC~~lk~~~~~~~~~~---~in~~~a~~LP~~Cgv~~p~~~C 106 (148)
++.+|++|+++. ..|+..||++++++. ++.|+|.+++..... .. .++..++.+||+.||+..+...|
T Consensus 7 ~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~---~~~~~~~~~~~a~~lp~~C~~~~~~~~C 79 (79)
T smart00499 7 QLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLG---ILEIPGVNAQNAASLPSACGVPPPYTDC 79 (79)
T ss_pred hHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhccccc---ccchhhhhHHHHHhhHHhcCCCCCCCCC
Confidence 456999999876 367789999999985 688999987754211 12 25999999999999998764334
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.40 E-value=4.8e-09 Score=72.32 Aligned_cols=67 Identities=33% Similarity=0.677 Sum_probs=51.9
Q ss_pred hccccchhhhcCCC-CCCccchhhhhhccCCCCccccccccCcccccc-------ccCCCCHHHHhhccccCCCCCCC
Q 038792 34 NRLAPCLRYLNGSR-DVPDSCCDPLKSVIKDNPECLCSMISNRGSRRA-------EEAGINVSAAQELPGKCGQRVNP 103 (148)
Q Consensus 34 ~~L~pCl~yv~g~~-~P~~~CC~~lk~l~~~~~~ClC~~lk~~~~~~~-------~~~~in~~~a~~LP~~Cgv~~p~ 103 (148)
..+.+|.+|++++. .|+..||++|+++ ++.|.|..++....... ...+++..+|..||+.||+..++
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~ 87 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY 87 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS
T ss_pred ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 35889999999875 6778999999998 58999987775321100 01258899999999999999875
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=91.10 E-value=0.14 Score=35.74 Aligned_cols=67 Identities=22% Similarity=0.463 Sum_probs=42.0
Q ss_pred ccccchhhhc--C---CCCCCccchhhhhhccCCC-CccccccccCccccccccCCCCHH-HHhhccccCCCCCCCC
Q 038792 35 RLAPCLRYLN--G---SRDVPDSCCDPLKSVIKDN-PECLCSMISNRGSRRAEEAGINVS-AAQELPGKCGQRVNPL 104 (148)
Q Consensus 35 ~L~pCl~yv~--g---~~~P~~~CC~~lk~l~~~~-~~ClC~~lk~~~~~~~~~~~in~~-~a~~LP~~Cgv~~p~~ 104 (148)
+|.-|.+.+. + +..+...||.-++++.+.+ ..|||..+|..- ....++|.. ....|-..||-..|..
T Consensus 8 kLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~v---lg~i~~~ipv~l~~lln~CGk~~p~g 81 (85)
T PF14547_consen 8 KLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANV---LGLINVNIPVALNLLLNACGKTVPSG 81 (85)
T ss_pred hhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhc---ccccccccccHHHHHHHHhCCcCcCC
Confidence 4667877771 1 1234578999999998654 479998777431 111223333 3445678899887653
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=90.42 E-value=0.17 Score=35.35 Aligned_cols=64 Identities=27% Similarity=0.538 Sum_probs=41.1
Q ss_pred ccccchhhhcC-----CCCCCccchhhhhhccCCC-CccccccccCccccccccCCCC--HHHHh-hccccCCCCCCCC
Q 038792 35 RLAPCLRYLNG-----SRDVPDSCCDPLKSVIKDN-PECLCSMISNRGSRRAEEAGIN--VSAAQ-ELPGKCGQRVNPL 104 (148)
Q Consensus 35 ~L~pCl~yv~g-----~~~P~~~CC~~lk~l~~~~-~~ClC~~lk~~~~~~~~~~~in--~~~a~-~LP~~Cgv~~p~~ 104 (148)
+|.-|..-+.. +..|..+||.-++++.+-+ ..|+|..+|.. .+||+ ..... -|-..||-..|+.
T Consensus 10 kLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan------~lgi~~~~pv~l~llln~CGk~~P~g 82 (85)
T cd01958 10 KLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKAN------ILGISINIPVALSLLLNSCGRNVPPG 82 (85)
T ss_pred HhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeecc------ccCcccccChhHHHHHHHHcCcCCCC
Confidence 46677776632 1234478999999998754 57999988753 23443 34333 3456788887653
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=81.69 E-value=1.4 Score=31.18 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=7.5
Q ss_pred CchhHHHHHHHHH
Q 038792 1 MEMKLISSCGIAL 13 (148)
Q Consensus 1 m~~~~~~~~~~~~ 13 (148)
|++|+.+++.+++
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8877754444433
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=63.14 E-value=1.7 Score=30.62 Aligned_cols=69 Identities=25% Similarity=0.496 Sum_probs=41.8
Q ss_pred ccccchhhhcC----CCC-----------CCccchhhhhhccCCCCccccccccCcccccccc------------CCCCH
Q 038792 35 RLAPCLRYLNG----SRD-----------VPDSCCDPLKSVIKDNPECLCSMISNRGSRRAEE------------AGINV 87 (148)
Q Consensus 35 ~L~pCl~yv~g----~~~-----------P~~~CC~~lk~l~~~~~~ClC~~lk~~~~~~~~~------------~~in~ 87 (148)
.|.+|..|+.- .+. ....||..++.+ .+.|.|..+.......... ...-.
T Consensus 14 ~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (110)
T cd00261 14 PLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMR 90 (110)
T ss_pred cCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHH
Confidence 57889888842 111 114699999987 4789998775321000000 01223
Q ss_pred HHHhhccccCCCCCCCCCCC
Q 038792 88 SAAQELPGKCGQRVNPLGCL 107 (148)
Q Consensus 88 ~~a~~LP~~Cgv~~p~~~C~ 107 (148)
..|..||+.||+.. +..|.
T Consensus 91 ~~a~~Lp~~C~~~~-~~~C~ 109 (110)
T cd00261 91 QAAQNLPSMCNLYP-PPYCP 109 (110)
T ss_pred HHHHhhchhcCCCC-CCCCC
Confidence 47889999999986 33464
No 12
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=35.22 E-value=39 Score=23.89 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=11.9
Q ss_pred CchhHHHHHHHHHHHHHH
Q 038792 1 MEMKLISSCGIALMVLLA 18 (148)
Q Consensus 1 m~~~~~~~~~~~~l~l~~ 18 (148)
|++|++...++++++|++
T Consensus 1 m~~~~~~~ll~~v~~l~~ 18 (91)
T TIGR01165 1 MSMKKTIWLLAAVAALVV 18 (91)
T ss_pred CCcchhHHHHHHHHHHHH
Confidence 888888766666555433
No 13
>PF15284 PAGK: Phage-encoded virulence factor
Probab=29.74 E-value=47 Score=21.78 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=11.8
Q ss_pred CchhHHHHHHHHHHHHHHHHh
Q 038792 1 MEMKLISSCGIALMVLLAMLS 21 (148)
Q Consensus 1 m~~~~~~~~~~~~l~l~~~~~ 21 (148)
|.+.+++++.++.+++....+
T Consensus 1 Mkk~ksifL~l~~~LsA~~FS 21 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFS 21 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhh
Confidence 566677666555555544433
No 14
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=25.78 E-value=1e+02 Score=19.28 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHH
Q 038792 4 KLISSCGIALMVLLA 18 (148)
Q Consensus 4 ~~~~~~~~~~l~l~~ 18 (148)
|+.+..+++++++++
T Consensus 3 Kk~i~~i~~~l~~~~ 17 (48)
T PRK10081 3 KKTIAAIFSVLVLST 17 (48)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444344444333
No 15
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=21.21 E-value=78 Score=26.00 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.3
Q ss_pred eecchhHHHHHHHHHHhhhh
Q 038792 122 LLFKSQSFMVALVLSMTAQI 141 (148)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~ 141 (148)
-..+-+.|+|+.+.++.|||
T Consensus 83 pvG~~~~F~~n~~vs~~Fq~ 102 (233)
T PF10176_consen 83 PVGNDFSFVWNFLVSFSFQW 102 (233)
T ss_pred CcccHHHHHHHHHHHHHHHH
Confidence 34677899999999999997
Done!