BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038793
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1
Length = 130
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 159 LFYKKLRASDQSK-KKIVIRAKDAENVFPFLAHLDYKKQINYSVIAKDVHGVAWKFNFVD 217
LF K + SD K ++VI AE FP + K + + +DV+G W+F +
Sbjct: 13 LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNF--EDVNGKVWRFRYSY 70
Query: 218 GKSRRHY-LTVGWKYFVRQKNLVPGDTVIFIR 248
S + Y LT GW FV++KNL GD V F R
Sbjct: 71 WNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSR 102
>pdb|1YEL|A Chain A, Structure Of The Hypothetical Arabidopsis Thaliana Protein
At1g16640.1
Length = 104
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 205 DVHGVAWKFNFVDGKSRRHYLTVGWKYFVRQKNLVPGDTVIFI 247
D G +W + + + +LTVGW+ FV+ NL G + FI
Sbjct: 46 DYSGRSWTVR-MKKRGEKVFLTVGWENFVKDNNLEDGKYLQFI 87
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 116 YTKMTLLPLPEMVGENFKGKELQDLVVDNKRDGEGSTAN--STPPLFYKKLRASDQSKKK 173
Y+ + +PLP++V + ++ D ++ RDG T FY ++ Q +
Sbjct: 190 YSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAPAASAIQMAES 249
Query: 174 IVIRAKDAENVFPFLAHL 191
+ KD + V P A L
Sbjct: 250 YL---KDKKRVLPVAAQL 264
>pdb|2XHC|A Chain A, Crystal Structure Of Thermotoga Maritima N-utilization
Substance G (nusg)
Length = 352
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 84 VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLP 123
+++ PP + + +I V +VR +V + D+ YTK +P
Sbjct: 77 IAEEPPIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIP 116
>pdb|2XHA|A Chain A, Crystal Structure Of Domain 2 Of Thermotoga Maritima
N-utilization Substance G (nusg)
pdb|2XHA|B Chain B, Crystal Structure Of Domain 2 Of Thermotoga Maritima
N-utilization Substance G (nusg)
Length = 193
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 84 VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLP 123
+++ PP + + +I V +VR +V + D+ YTK +P
Sbjct: 37 IAEEPPIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIP 76
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 65 GDLVVYFPQGHLEYSAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL 124
GD + Q E + KA FD +T K+ K L +
Sbjct: 4 GDFLTVMTQKMSEKDTKEEILKAFKLFD----------------DDETGKISFK-NLKRV 46
Query: 125 PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKK 163
+ +GEN +ELQ+++ + RDG+G + KK
Sbjct: 47 AKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMKK 85
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 65 GDLVVYFPQGHLEYSAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL 124
GD + Q E + KA FD +T K+ K L +
Sbjct: 62 GDFLTVMTQKMSEKDTKEEILKAFKLFD----------------DDETGKISFK-NLKRV 104
Query: 125 PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKK 163
+ +GEN +ELQ+++ + RDG+G + KK
Sbjct: 105 AKELGENLTDEELQEMIDEADRDGDGEVSEQEFLRIMKK 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,342,332
Number of Sequences: 62578
Number of extensions: 374142
Number of successful extensions: 839
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 15
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)