Query 038793
Match_columns 251
No_of_seqs 191 out of 495
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 04:56:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1.2E-28 4E-33 201.0 12.0 96 152-250 6-104 (130)
2 4i1k_A B3 domain-containing tr 99.8 6E-19 2E-23 146.7 10.8 83 154-248 43-127 (146)
3 1yel_A AT1G16640; CESG, protei 99.6 9.3E-16 3.2E-20 119.5 9.6 82 156-249 7-89 (104)
4 1na6_A Ecorii, restriction end 87.4 0.59 2E-05 44.6 5.0 89 156-249 17-123 (404)
5 2cbp_A Cucumber basic protein; 41.9 6.9 0.00024 29.6 0.6 15 233-247 19-33 (96)
6 3m7a_A Uncharacterized protein 36.8 70 0.0024 25.8 5.9 46 198-246 83-140 (140)
7 1ws8_A Mavicyanin; oxidized fo 27.8 32 0.0011 26.5 2.4 19 229-247 21-39 (109)
8 3pjy_A Hypothetical signal pep 27.5 1.3E+02 0.0046 23.9 6.1 46 198-246 69-126 (136)
9 3e0e_A Replication protein A; 26.9 59 0.002 24.0 3.6 35 199-249 40-74 (97)
10 1nwd_B GAD, glutamate decarbox 21.7 24 0.00081 21.3 0.4 13 226-238 15-27 (28)
11 2p5d_A UPF0310 protein mjecl36 21.3 56 0.0019 26.3 2.7 19 227-247 29-47 (147)
12 1f56_A Plantacyanin; cupredoxi 20.5 38 0.0013 25.2 1.4 15 233-247 14-28 (91)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=1.2e-28 Score=200.95 Aligned_cols=96 Identities=34% Similarity=0.548 Sum_probs=86.1
Q ss_pred CCCCCCCeEEEecccCCCCCCC-EEEehhhhhhhCCCCccccccCCCC-eEEEEEeCCCCeEEEEE-EeCCCCceEEccc
Q 038793 152 TANSTPPLFYKKLRASDQSKKK-IVIRAKDAENVFPFLAHLDYKKQIN-YSVIAKDVHGVAWKFNF-VDGKSRRHYLTVG 228 (251)
Q Consensus 152 ~~~~~~~~F~K~LT~SDv~~~g-lsVPk~~Ae~~FP~l~~Ld~~~~~p-~~L~~~D~~G~~W~Fr~-yr~~srrhlLTtG 228 (251)
..++..++|.|+||+|||++++ |+||+++|+.|||. ++.++..+ +.|.++|.+|++|+|+| ||+++++|+|++|
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~---~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~G 82 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPL---PSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKG 82 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCC---CSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESS
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCc---cccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCC
Confidence 3466788999999999999877 99999999999999 66554444 89999999999999999 9999999999999
Q ss_pred HHHHhhhcCCCCCCEEEEEecc
Q 038793 229 WKYFVRQKNLVPGDTVIFIRYA 250 (251)
Q Consensus 229 Ws~FVr~K~L~aGD~VvF~R~~ 250 (251)
|+.||++|+|++||+|+|+|.+
T Consensus 83 W~~FV~~~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 83 WSRFVKEKNLRAGDVVSFSRSN 104 (130)
T ss_dssp HHHHHHHTTCCTTCEEEEEECC
T ss_pred hHHHHHHcCCCCCCEEEEEEec
Confidence 9999999999999999999864
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.78 E-value=6e-19 Score=146.68 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=74.1
Q ss_pred CCCCCeEEEecccCCCCCCC-EEEehhhhhhhCCCCccccccCCCCeEEEEEeCCCCeEEEEE-EeCCCCceEEcccHHH
Q 038793 154 NSTPPLFYKKLRASDQSKKK-IVIRAKDAENVFPFLAHLDYKKQINYSVIAKDVHGVAWKFNF-VDGKSRRHYLTVGWKY 231 (251)
Q Consensus 154 ~~~~~~F~K~LT~SDv~~~g-lsVPk~~Ae~~FP~l~~Ld~~~~~p~~L~~~D~~G~~W~Fr~-yr~~srrhlLTtGWs~ 231 (251)
++..++|.|+||+||+.+.. |+||+++++.+||. .+ ..+.+.|. |+.|.|++ |++. ++.|++||+.
T Consensus 43 ~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~---~~------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~ 110 (146)
T 4i1k_A 43 EPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSG---IS------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYE 110 (146)
T ss_dssp CCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTT---CC------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHH
T ss_pred CCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCC---CC------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHH
Confidence 45678999999999998876 99999999999998 33 46888888 69999999 9874 7899999999
Q ss_pred HhhhcCCCCCCEEEEEe
Q 038793 232 FVRQKNLVPGDTVIFIR 248 (251)
Q Consensus 232 FVr~K~L~aGD~VvF~R 248 (251)
||++|+|++||+|+|..
T Consensus 111 Fv~dn~L~~GD~cvFel 127 (146)
T 4i1k_A 111 FTLENNLGEGDVCVFEL 127 (146)
T ss_dssp HHHHTTCCTTCEEEEEE
T ss_pred HHHHcCCCCCCEEEEEE
Confidence 99999999999999975
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.63 E-value=9.3e-16 Score=119.49 Aligned_cols=82 Identities=28% Similarity=0.407 Sum_probs=69.2
Q ss_pred CCCeEEEecccCCCCCCCEEEehhhhhhhCCCCccccccCCCCeEEEEEeCCCCeEEEEE-EeCCCCceEEcccHHHHhh
Q 038793 156 TPPLFYKKLRASDQSKKKIVIRAKDAENVFPFLAHLDYKKQINYSVIAKDVHGVAWKFNF-VDGKSRRHYLTVGWKYFVR 234 (251)
Q Consensus 156 ~~~~F~K~LT~SDv~~~glsVPk~~Ae~~FP~l~~Ld~~~~~p~~L~~~D~~G~~W~Fr~-yr~~srrhlLTtGWs~FVr 234 (251)
..+.|.|+|+++| ....|.||+++++.+.+. +. ..+.++|..|+.|++++ .++ ++.+|++||..||+
T Consensus 7 ~~p~F~K~l~~~~-~~~~L~IP~~F~~~~~~~---~~------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~ 74 (104)
T 1yel_A 7 GEVQFMKPFISEK-SSKSLEIPLGFNEYFPAP---FP------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVK 74 (104)
T ss_dssp CCEEEEEECCHHH-HTTCEECCHHHHTTCCCC---CC------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHH
T ss_pred CCCCEEEEECCCC-ccceEECCHHHHHhcCcc---CC------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHH
Confidence 4579999999999 333599999999886655 22 47899999999999999 764 46799999999999
Q ss_pred hcCCCCCCEEEEEec
Q 038793 235 QKNLVPGDTVIFIRY 249 (251)
Q Consensus 235 ~K~L~aGD~VvF~R~ 249 (251)
+|+|++||.|+|...
T Consensus 75 ~~~L~~GD~lvF~~~ 89 (104)
T 1yel_A 75 DNNLEDGKYLQFIYD 89 (104)
T ss_dssp HHTCCTTCEEEEEEC
T ss_pred HcCCCCCCEEEEEEc
Confidence 999999999999753
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=87.45 E-value=0.59 Score=44.61 Aligned_cols=89 Identities=12% Similarity=0.035 Sum_probs=59.7
Q ss_pred CCCeEEEecccCCCCCC-----CEEEehhhhhhhCCCCccccc-cCCCC-eEEE--EEeCCCCeEEEEE-EeC----CCC
Q 038793 156 TPPLFYKKLRASDQSKK-----KIVIRAKDAENVFPFLAHLDY-KKQIN-YSVI--AKDVHGVAWKFNF-VDG----KSR 221 (251)
Q Consensus 156 ~~~~F~K~LT~SDv~~~-----glsVPk~~Ae~~FP~l~~Ld~-~~~~p-~~L~--~~D~~G~~W~Fr~-yr~----~sr 221 (251)
....|+|.|++-|++.. |+.+|+.....+||. ++. ...++ +.+. +-|...-++.++. |.+ +++
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~---lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~t 93 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPS---INHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKT 93 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGG---GCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSC
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhccc---CCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCC
Confidence 34689999999999654 399999778999998 552 23344 4443 3344344558888 544 233
Q ss_pred --ceEEc--ccHHHHhhhcCCCCCCEEEEEec
Q 038793 222 --RHYLT--VGWKYFVRQKNLVPGDTVIFIRY 249 (251)
Q Consensus 222 --rhlLT--tGWs~FVr~K~L~aGD~VvF~R~ 249 (251)
-|-|| ++ .+.-.....+||.++|-+.
T Consensus 94 RnEyRLt~~~~--~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 94 RNEKRITRWGR--GSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp CCEEEEECCCT--TSGGGCGGGTTCEEEEEEE
T ss_pred CCceEEeecCC--CCcccccCCCCCEEEEEEe
Confidence 36776 33 4566688899999999764
No 5
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=41.89 E-value=6.9 Score=29.58 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=13.3
Q ss_pred hhhcCCCCCCEEEEE
Q 038793 233 VRQKNLVPGDTVIFI 247 (251)
Q Consensus 233 Vr~K~L~aGD~VvF~ 247 (251)
+..|+.++||+|+|.
T Consensus 19 a~~~~f~vGD~L~F~ 33 (96)
T 2cbp_A 19 PKGKRFRAGDILLFN 33 (96)
T ss_dssp TTTCCBCTTCEEEEE
T ss_pred ccCceEcCCCEEEEE
Confidence 677899999999995
No 6
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=36.79 E-value=70 Score=25.84 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCeEEEEE----EeCC------CCceEE--cccHHHHhhhcCCCCCCEEEE
Q 038793 198 NYSVIAKDVHGVAWKFNF----VDGK------SRRHYL--TVGWKYFVRQKNLVPGDTVIF 246 (251)
Q Consensus 198 p~~L~~~D~~G~~W~Fr~----yr~~------srrhlL--TtGWs~FVr~K~L~aGD~VvF 246 (251)
|..+.+.|..|++=.... ++.. +-+|+| ..|| ..+.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 367888898888766643 2221 235787 6786 57889999999975
No 7
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=27.76 E-value=32 Score=26.47 Aligned_cols=19 Identities=16% Similarity=0.469 Sum_probs=16.0
Q ss_pred HHHHhhhcCCCCCCEEEEE
Q 038793 229 WKYFVRQKNLVPGDTVIFI 247 (251)
Q Consensus 229 Ws~FVr~K~L~aGD~VvF~ 247 (251)
-...+..|+.++||+|+|-
T Consensus 21 Y~~Wa~~~~F~vGD~LvF~ 39 (109)
T 1ws8_A 21 YAKWASSNKFHVGDSLLFN 39 (109)
T ss_dssp HHHHHHTSCBCTTCEEEEE
T ss_pred hhHhhcCCcCcCCCEEEEe
Confidence 4455889999999999995
No 8
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=27.47 E-value=1.3e+02 Score=23.92 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCeEEEEE----EeC------CCCceEE--cccHHHHhhhcCCCCCCEEEE
Q 038793 198 NYSVIAKDVHGVAWKFNF----VDG------KSRRHYL--TVGWKYFVRQKNLVPGDTVIF 246 (251)
Q Consensus 198 p~~L~~~D~~G~~W~Fr~----yr~------~srrhlL--TtGWs~FVr~K~L~aGD~VvF 246 (251)
|..+.+.|..|++=.... ++. .+-+|+| ..|| ..+.++++||.|.+
T Consensus 69 PLDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 126 (136)
T 3pjy_A 69 PLDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGT---VKRLGVSPGDRLEG 126 (136)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETTH---HHHHTCCTTCEEEE
T ss_pred ceEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcCh---HHhcCCCCCCEEEE
Confidence 367888888888766632 221 2235777 6786 47899999999975
No 9
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=26.93 E-value=59 Score=24.01 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=23.9
Q ss_pred eEEEEEeCCCCeEEEEEEeCCCCceEEcccHHHHhhhcCCCCCCEEEEEec
Q 038793 199 YSVIAKDVHGVAWKFNFVDGKSRRHYLTVGWKYFVRQKNLVPGDTVIFIRY 249 (251)
Q Consensus 199 ~~L~~~D~~G~~W~Fr~yr~~srrhlLTtGWs~FVr~K~L~aGD~VvF~R~ 249 (251)
..+.+.|..| +.+. +.|...+.. .|++||.|.| ++
T Consensus 40 ~~~~l~DeTG---~I~~-----------tlW~~~~~~-~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRG-----------TLWNELADF-EVKKGDIAEV-SG 74 (97)
T ss_dssp EEEEEEETTE---EEEE-----------EEEGGGGGC-CCCTTCEEEE-EE
T ss_pred EEEEEECCCC---cEEE-----------EEECCcccc-ccCCCCEEEE-EE
Confidence 5688889888 4555 233344433 8999999998 53
No 10
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=21.66 E-value=24 Score=21.31 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=10.5
Q ss_pred cccHHHHhhhcCC
Q 038793 226 TVGWKYFVRQKNL 238 (251)
Q Consensus 226 TtGWs~FVr~K~L 238 (251)
-+.|..||.+|+-
T Consensus 15 itawkkfveekkk 27 (28)
T 1nwd_B 15 ITAWKKFVEEKKK 27 (28)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhc
Confidence 3789999998863
No 11
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=21.33 E-value=56 Score=26.28 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.8
Q ss_pred ccHHHHhhhcCCCCCCEEEEE
Q 038793 227 VGWKYFVRQKNLVPGDTVIFI 247 (251)
Q Consensus 227 tGWs~FVr~K~L~aGD~VvF~ 247 (251)
-+...|.| +++.||.++||
T Consensus 29 ~~arn~lr--~Mk~GD~~~fY 47 (147)
T 2p5d_A 29 ERYKNTIN--KVKVGDKLIIY 47 (147)
T ss_dssp GGGHHHHT--TCCTTCEEEEE
T ss_pred HHHHHHHH--hCCCCCEEEEE
Confidence 34567887 79999999999
No 12
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=20.55 E-value=38 Score=25.20 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=13.5
Q ss_pred hhhcCCCCCCEEEEE
Q 038793 233 VRQKNLVPGDTVIFI 247 (251)
Q Consensus 233 Vr~K~L~aGD~VvF~ 247 (251)
+..|...+||+|+|.
T Consensus 14 a~~~~f~vGD~L~F~ 28 (91)
T 1f56_A 14 ARGKSFRAGDVLVFK 28 (91)
T ss_dssp CTTCCBCTTCEEEEE
T ss_pred cCCccEeCCCEEEEE
Confidence 678999999999995
Done!