BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038795
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Query: 7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
E+ KGPW EED+ +I HV+KYGP+ WS I +K L R GK CR RW N L P +K
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDI-AKHLKGRIGKQCRERWHNHLNPEVKK-TS 81
Query: 67 FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
++ EE+RI+ + + GN+WA IA LPGRTDN VKN W+S +R
Sbjct: 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 44 RTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVK 102
RT C+ RW L P L G ++ EE++ VIE ++G +W+ IA +L GR +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKG-PWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCR 66
Query: 103 NFWSS 107
W +
Sbjct: 67 ERWHN 71
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
E+ KGPW EED+ +I V+KYGP+ WS I +K L R GK CR RW N L P +K
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKK-TS 112
Query: 67 FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
++ EE+RI+ + + GN+WA IA LPGRTDN +KN W+S +R
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSL 69
K W EEDE L V++ G DW I + L RT C+ RW L P L G ++
Sbjct: 6 KTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNPELIKG-PWTK 63
Query: 70 EEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSS 107
EE++ VI+L ++G +W+ IA +L GR + W +
Sbjct: 64 EEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 102
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
E+ KGPW EED+ +I V+KYGP+ WS I +K L R GK CR RW N L P +K
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKK-TS 58
Query: 67 FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
++ EE+RI+ + + GN+WA IA LPGRTDN +KN W+S +R
Sbjct: 59 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 2/102 (1%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSL 69
KGPW EED+ +I V+KYGP+ WS I +K L R GK CR RW N L P +K ++
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNPEVKK-TSWTE 61
Query: 70 EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
EE+RI+ + + GN+WA IA LPGRTDN +KN W+S +R
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 103
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCK 66
++ KGPW EED+ +I VKKYG + W+ I +K L R GK CR RW N L P +K
Sbjct: 4 DLVKGPWTKEEDQKVIELVKKYGTKQWTLI-AKHLKGRLGKQCRERWHNHLNPEVKKSS- 61
Query: 67 FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
++ EE+RI+ E GN+WA IA LPGRTDN VKN W+S KR
Sbjct: 62 WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKR 106
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSL 69
KGP+ ED+++ +VK+ GP++W I S L R+ K CR RW N L P + ++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHLDPAVVKHA-WTP 59
Query: 70 EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFW-SSRQKRLA 113
EE+ + + G+KW+ IA +PGRTDN +KN W SS KR++
Sbjct: 60 EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 16 EEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIV 75
EEDE+L V ++G DW I + R + CR RW N L P++ + ++ EE+ ++
Sbjct: 17 EEDEMLKRAVAQHGS-DWKMI-AATFPNRNARQCRDRWKNYLAPSISH-TPWTAEEDALL 73
Query: 76 IELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLA 113
++ ++G +WA IA + PGRTD +KN W + +L
Sbjct: 74 VQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLG 111
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 16 EEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIV 75
EED L V +YG +DW I S+ ++ R + CR RW N + P L+ +S EE+ ++
Sbjct: 7 EEDLKLQQLVMRYGAKDWIRI-SQLMITRNPRQCRERWNNYINPALRTD-PWSPEEDMLL 64
Query: 76 IELQAQFGNKWARIATYLPGRTDNDVKNFW 105
+ A++G KW +I+ +L R+DN+++N W
Sbjct: 65 DQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWV 54
+R PW EED +L +YGP+ W+ I SK L R+ + R RW+
Sbjct: 51 LRTDPWSPEEDMLLDQKYAEYGPK-WNKI-SKFLKNRSDNNIRNRWM 95
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 57.8 bits (138), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/50 (58%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
KGPW EED+ LI V+KYGP+ WS I +K L R GK CR RW N L P
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNP 51
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 56.6 bits (135), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
KGPW EED+ +I V+KYGP+ WS I +K L R GK CR RW N L P
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNP 51
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
KGPW EED+ +I V+KYGP+ WS I +K L R GK CR RW N L P
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVI-AKHLKGRIGKQCRERWHNHLNP 51
Score = 28.1 bits (61), Expect = 6.0, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 70 EEERIVIELQAQFGNK-WARIATYLPGRTDNDVKNFW 105
EE++ VIEL ++G K W+ IA +L GR + W
Sbjct: 9 EEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERW 45
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 54.7 bits (130), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 70 EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
EE+RI+ + + GN+WA IA LPGRTDN +KN W+S +R
Sbjct: 9 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 50
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 53.5 bits (127), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 70 EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111
EE+RI+ + + GN+WA IA LPGRTDN +KN W+S +R
Sbjct: 11 EEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 52
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 13 WKAEEDEVLINHVKKYGPRDWSSIRSKGLLQR-TGKSCRLRWVNKLRPNLK 62
W+ EDE+L V KYG WS I S LL R + K C+ RW L P++K
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIAS--LLHRKSAKQCKARWYEWLDPSIK 60
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL 57
K W EEDE L V+++G +DW + S RT + C+ RW+ L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLASH-FPNRTDQQCQYRWLRVL 54
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 66 KFSLEEERIVIELQAQFGNK-WARIATYLPGRTDNDVKNFW 105
K++ EE+ + L QFG + W +A++ P RTD + W
Sbjct: 10 KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
K W EEDE L V++ G DW I + L RT C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59
K W EEDE L V++ G DW I + L RT C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVI-ANYLPNRTDVQCQHRWQKVLNP 51
>pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate
Synthetase From Pyrococcus Horikoshii Ot3
Length = 342
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 32/51 (62%)
Query: 22 INHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEE 72
I+ +KKYG D+++ +K ++++ ++ R+ +K R +L+ KF +E E
Sbjct: 291 IDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSKARMDLELLAKFIVERE 341
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 9 RKGPWKAEEDEVLINHVKKYGPRDWSSI-RSKGLLQRTGKSCRLRW 53
+K W EE E + V+KYG +W++I ++ + RT + RW
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 9 RKGPWKAEEDEVLINHVKKYGPRDWSSI-RSKGLLQRTGKSCRLRW 53
+K W EE E + V+KYG +W++I ++ + RT + RW
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 58
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 9 RKGPWKAEEDEVLINHVKKYGPRDWSSI-RSKGLLQRTGKSCRLRW 53
+K W EE E + V+KYG +W++I ++ + RT + RW
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 9 RKGPWKAEEDEVLINHVKKYGPRDWSSI-RSKGLLQRTGKSCRLRW 53
+K W EE E + V+KYG +W++I ++ + RT + RW
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 46
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 9 RKGPWKAEEDEVLINHVKKYGPRDWSSI-RSKGLLQRTGKSCRLRW 53
+K W EE E + V+KYG +W++I ++ + RT + RW
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 54
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 13 WKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGK 47
W EEDE L+ V KYG W+ IR L T K
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQIRDDPFLGITDK 206
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 13 WKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGK 47
W EEDE L+ V KYG W+ IR L T K
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQIRDDPFLGITDK 205
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 203 TEPVLPIYFPQISQPQQDLPFSPESQELLARLEDPYFFDVFGPVDAPP 250
T+PV P Y+P+ PQ +P+ +E+ A + P+ D GP D P
Sbjct: 380 TDPVDPAYYPE---PQIRTFTAPDGREIHAHIYPPHSPDFTGPADELP 424
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNF 104
K+++EE+ + + A+FG +W +I+ + RT VK++
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSY 49
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 203 TEPVLPIYFPQISQPQQDLPFSPESQELLARLEDPYFFDVFGPVDAPP 250
T+PV P Y+P+ PQ +P+ +E+ A + P+ D GP D P
Sbjct: 380 TDPVDPAYYPE---PQIRTFTAPDGREIHAHIYPPHSPDFTGPADELP 424
>pdb|4EEF|G Chain G, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|H Chain H, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|I Chain I, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin
Length = 74
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 66 KFSLEEERIVIELQAQFGNK-----WARIATYLPGRTDNDVKNFW 105
KFS E I E+ F NK W ++A Y+ GRT +VK +
Sbjct: 24 KFS---ENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 9 RKGPWKAEEDEVLINHVKKYGPRDWSSI 36
++ W EED+ L + V+KYG +WS I
Sbjct: 2 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 29
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 27.7 bits (60), Expect = 7.6, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 9 RKGPWKAEEDEVLINHVKKYGPRDWSSI 36
++ W EED+ L + V+KYG +WS I
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 28
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,549,443
Number of Sequences: 62578
Number of extensions: 392546
Number of successful extensions: 763
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 44
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)