Query 038795
Match_columns 302
No_of_seqs 211 out of 1430
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:59:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.2E-33 4.2E-38 227.3 8.9 104 7-112 1-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 9.2E-34 3.1E-38 229.5 7.4 104 10-115 1-104 (107)
3 3osg_A MYB21; transcription-DN 100.0 7.8E-33 2.7E-37 230.3 9.6 106 4-112 5-110 (126)
4 3zqc_A MYB3; transcription-DNA 100.0 8.3E-33 2.9E-37 231.3 8.4 101 10-112 2-102 (131)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 1.7E-32 5.8E-37 228.2 7.4 106 4-111 21-126 (128)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 2.1E-30 7.2E-35 222.7 7.3 105 5-111 53-157 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 9.2E-29 3.2E-33 212.5 5.4 101 7-109 3-104 (159)
8 2dim_A Cell division cycle 5-l 99.8 5.9E-21 2E-25 143.4 1.7 66 5-72 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 1.2E-19 4.2E-24 150.6 5.6 72 36-109 1-73 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 1.9E-18 6.5E-23 157.5 6.8 105 6-112 4-200 (246)
11 2juh_A Telomere binding protei 99.7 1.7E-18 5.7E-23 143.7 3.2 84 5-88 12-103 (121)
12 2llk_A Cyclin-D-binding MYB-li 99.7 3.5E-18 1.2E-22 130.3 3.8 59 49-109 9-67 (73)
13 2d9a_A B-MYB, MYB-related prot 99.7 1.9E-17 6.6E-22 120.6 3.7 58 4-62 2-59 (60)
14 1gvd_A MYB proto-oncogene prot 99.7 2.2E-17 7.4E-22 117.0 3.3 52 8-60 1-52 (52)
15 2roh_A RTBP1, telomere binding 99.7 3.8E-17 1.3E-21 135.7 4.6 80 5-85 26-114 (122)
16 2din_A Cell division cycle 5-l 99.6 2.8E-16 9.7E-21 116.5 6.6 59 55-115 1-59 (66)
17 1guu_A C-MYB, MYB proto-oncoge 99.6 5E-17 1.7E-21 115.1 2.2 52 8-60 1-52 (52)
18 2cu7_A KIAA1915 protein; nucle 99.6 2.8E-16 9.6E-21 118.6 6.4 57 57-114 3-59 (72)
19 1ity_A TRF1; helix-turn-helix, 99.6 1.1E-16 3.7E-21 119.9 3.1 61 3-64 3-65 (69)
20 3sjm_A Telomeric repeat-bindin 99.6 4.9E-16 1.7E-20 115.3 1.8 56 6-61 7-63 (64)
21 1x41_A Transcriptional adaptor 99.6 7.5E-16 2.6E-20 112.5 2.5 57 3-60 1-57 (60)
22 2d9a_A B-MYB, MYB-related prot 99.6 3.4E-15 1.1E-19 108.7 5.4 52 58-110 3-55 (60)
23 1guu_A C-MYB, MYB proto-oncoge 99.6 5E-15 1.7E-19 104.7 6.1 49 61-110 1-50 (52)
24 2yum_A ZZZ3 protein, zinc fing 99.5 1E-15 3.5E-20 116.1 0.9 61 3-64 1-66 (75)
25 1w0t_A Telomeric repeat bindin 99.5 1.6E-15 5.4E-20 108.0 1.8 49 9-58 1-51 (53)
26 1gvd_A MYB proto-oncogene prot 99.5 9.9E-15 3.4E-19 103.2 5.6 48 61-109 1-49 (52)
27 1w0t_A Telomeric repeat bindin 99.5 1.2E-14 4E-19 103.4 5.7 49 62-111 1-52 (53)
28 1x41_A Transcriptional adaptor 99.5 1.1E-14 3.7E-19 106.3 5.3 50 59-109 4-54 (60)
29 1ity_A TRF1; helix-turn-helix, 99.5 2.3E-14 8E-19 107.1 6.9 54 57-111 4-60 (69)
30 2din_A Cell division cycle 5-l 99.5 1.3E-15 4.4E-20 113.0 -0.6 57 5-64 4-60 (66)
31 2elk_A SPCC24B10.08C protein; 99.5 6.7E-15 2.3E-19 106.9 1.6 50 7-57 6-56 (58)
32 2ltp_A Nuclear receptor corepr 99.2 3.4E-15 1.2E-19 117.4 0.0 57 56-113 9-65 (89)
33 2dim_A Cell division cycle 5-l 99.5 4.2E-14 1.4E-18 105.9 5.5 52 58-110 4-56 (70)
34 3sjm_A Telomeric repeat-bindin 99.5 7.1E-14 2.4E-18 103.6 6.3 48 62-110 10-60 (64)
35 2elk_A SPCC24B10.08C protein; 99.5 7.1E-14 2.4E-18 101.5 5.8 49 59-108 5-55 (58)
36 2yum_A ZZZ3 protein, zinc fing 99.4 2.5E-14 8.6E-19 108.4 3.0 54 58-112 3-62 (75)
37 2cu7_A KIAA1915 protein; nucle 99.4 1E-14 3.6E-19 110.0 0.7 58 5-64 4-61 (72)
38 2aje_A Telomere repeat-binding 99.4 5E-14 1.7E-18 114.2 4.5 82 3-84 6-95 (105)
39 2ckx_A NGTRF1, telomere bindin 99.4 6.5E-14 2.2E-18 109.1 4.7 71 11-81 1-79 (83)
40 2cqr_A RSGI RUH-043, DNAJ homo 99.4 8.5E-13 2.9E-17 100.4 5.9 50 60-110 15-68 (73)
41 2llk_A Cyclin-D-binding MYB-li 99.3 2.4E-13 8.4E-18 103.4 2.7 53 5-61 18-70 (73)
42 3zqc_A MYB3; transcription-DNA 99.3 3.9E-13 1.3E-17 111.9 2.8 82 5-93 49-130 (131)
43 2yus_A SWI/SNF-related matrix- 99.3 4E-13 1.4E-17 103.6 2.7 51 4-56 12-62 (79)
44 2yus_A SWI/SNF-related matrix- 99.3 1.6E-12 5.6E-17 100.1 4.1 46 62-108 17-62 (79)
45 2ltp_A Nuclear receptor corepr 98.9 4E-13 1.4E-17 105.6 0.0 52 6-59 12-63 (89)
46 1x58_A Hypothetical protein 49 99.3 4.1E-12 1.4E-16 93.6 5.4 48 63-111 8-58 (62)
47 2ckx_A NGTRF1, telomere bindin 99.3 5.8E-12 2E-16 98.0 6.5 48 66-113 2-54 (83)
48 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1E-12 3.5E-17 100.0 1.0 54 4-58 12-68 (73)
49 1gv2_A C-MYB, MYB proto-oncoge 99.2 2.7E-12 9.1E-17 102.6 3.0 54 5-60 51-104 (105)
50 3osg_A MYB21; transcription-DN 99.2 1.1E-11 3.9E-16 102.4 6.4 51 58-109 6-56 (126)
51 2cjj_A Radialis; plant develop 99.2 1.9E-11 6.4E-16 97.0 6.7 51 66-116 10-64 (93)
52 2juh_A Telomere binding protei 99.2 1.8E-11 6.1E-16 101.5 6.4 55 57-112 11-70 (121)
53 2aje_A Telomere repeat-binding 99.2 2.4E-11 8.3E-16 98.4 6.5 52 60-112 10-66 (105)
54 1ign_A Protein (RAP1); RAP1,ye 99.2 1.2E-11 4E-16 112.9 3.7 51 60-111 5-61 (246)
55 2k9n_A MYB24; R2R3 domain, DNA 99.2 3.8E-12 1.3E-16 102.4 0.3 55 5-61 48-102 (107)
56 2roh_A RTBP1, telomere binding 99.1 8.5E-11 2.9E-15 97.5 6.3 51 61-112 29-84 (122)
57 3hm5_A DNA methyltransferase 1 99.0 6.8E-10 2.3E-14 88.0 6.1 65 47-116 18-87 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.9 9.7E-10 3.3E-14 80.3 5.5 45 65-109 13-57 (61)
59 2cjj_A Radialis; plant develop 98.9 1.7E-10 5.9E-15 91.5 0.6 48 9-57 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.8 6E-09 2E-13 78.9 5.5 48 62-111 7-58 (72)
61 1x58_A Hypothetical protein 49 98.8 2.5E-09 8.4E-14 78.8 2.2 51 8-59 6-58 (62)
62 2iw5_B Protein corest, REST co 98.7 1E-08 3.5E-13 92.9 4.9 47 65-111 134-180 (235)
63 2eqr_A N-COR1, N-COR, nuclear 98.7 5.2E-09 1.8E-13 76.4 2.4 50 6-57 8-57 (61)
64 1wgx_A KIAA1903 protein; MYB D 98.5 3.1E-08 1.1E-12 75.2 2.8 48 62-109 6-57 (73)
65 2xag_B REST corepressor 1; ami 98.5 3.2E-08 1.1E-12 98.4 3.3 46 66-111 382-427 (482)
66 1fex_A TRF2-interacting telome 98.4 4.1E-08 1.4E-12 71.5 1.0 49 10-58 2-58 (59)
67 2cqq_A RSGI RUH-037, DNAJ homo 98.4 6.6E-08 2.3E-12 73.1 1.0 51 7-59 5-58 (72)
68 1ug2_A 2610100B20RIK gene prod 98.2 1.7E-06 5.8E-11 68.0 5.8 50 66-115 35-87 (95)
69 2iw5_B Protein corest, REST co 98.2 3E-07 1E-11 83.3 1.8 49 8-58 131-179 (235)
70 1wgx_A KIAA1903 protein; MYB D 98.2 4.2E-07 1.4E-11 69.0 1.4 50 9-59 7-59 (73)
71 1ofc_X ISWI protein; nuclear p 98.1 4.3E-06 1.5E-10 78.9 8.1 102 12-114 112-278 (304)
72 1fex_A TRF2-interacting telome 98.1 1.9E-06 6.4E-11 62.7 4.1 44 66-109 4-57 (59)
73 2lr8_A CAsp8-associated protei 97.3 5.3E-07 1.8E-11 67.4 0.0 48 66-114 16-66 (70)
74 2yqk_A Arginine-glutamic acid 98.1 7.1E-06 2.4E-10 60.2 6.1 48 59-107 5-53 (63)
75 4iej_A DNA methyltransferase 1 97.9 2.1E-05 7.2E-10 62.2 7.2 62 51-117 22-88 (93)
76 4eef_G F-HB80.4, designed hema 97.9 3.4E-06 1.2E-10 63.9 1.2 42 65-106 21-66 (74)
77 4eef_G F-HB80.4, designed hema 97.8 5.6E-06 1.9E-10 62.8 1.1 44 10-54 20-66 (74)
78 4a69_C Nuclear receptor corepr 97.7 3.4E-05 1.2E-09 60.9 4.7 44 65-108 44-87 (94)
79 2crg_A Metastasis associated p 97.6 7.1E-05 2.4E-09 55.9 5.6 43 65-107 9-52 (70)
80 2yqk_A Arginine-glutamic acid 97.6 2.8E-05 9.5E-10 56.9 2.9 50 5-55 4-53 (63)
81 4b4c_A Chromodomain-helicase-D 97.4 0.00028 9.6E-09 62.1 6.5 105 10-114 7-199 (211)
82 2ebi_A DNA binding protein GT- 97.3 0.00019 6.7E-09 55.0 4.1 51 64-114 4-68 (86)
83 2xag_B REST corepressor 1; ami 97.2 7.6E-05 2.6E-09 74.3 1.7 47 9-57 379-425 (482)
84 3hm5_A DNA methyltransferase 1 97.2 6.9E-05 2.3E-09 59.3 1.1 50 8-58 28-81 (93)
85 2y9y_A Imitation switch protei 97.0 0.0016 5.5E-08 62.9 7.9 104 11-115 124-295 (374)
86 2crg_A Metastasis associated p 96.9 0.00055 1.9E-08 51.0 3.5 46 9-55 7-52 (70)
87 4a69_C Nuclear receptor corepr 96.8 0.00046 1.6E-08 54.4 2.1 43 10-54 43-85 (94)
88 2lr8_A CAsp8-associated protei 95.7 0.00027 9.2E-09 52.8 0.0 46 11-58 15-62 (70)
89 2ebi_A DNA binding protein GT- 96.2 0.00043 1.5E-08 53.0 -1.6 49 9-57 3-63 (86)
90 1ug2_A 2610100B20RIK gene prod 95.9 0.0024 8.3E-08 50.2 1.6 48 9-57 32-81 (95)
91 1irz_A ARR10-B; helix-turn-hel 94.8 0.059 2E-06 39.6 5.7 47 66-112 9-60 (64)
92 4iej_A DNA methyltransferase 1 94.1 0.017 5.9E-07 45.5 1.7 50 8-58 28-81 (93)
93 1ofc_X ISWI protein; nuclear p 92.2 0.21 7.3E-06 46.9 6.2 46 66-111 112-158 (304)
94 4b4c_A Chromodomain-helicase-D 92.1 0.2 6.7E-06 43.7 5.5 51 66-116 9-64 (211)
95 2xb0_X Chromo domain-containin 91.2 0.1 3.5E-06 48.3 2.8 27 11-37 169-195 (270)
96 2xb0_X Chromo domain-containin 78.1 5.4 0.00018 36.7 7.3 47 66-112 5-56 (270)
97 1irz_A ARR10-B; helix-turn-hel 76.8 1.5 5.1E-05 32.1 2.5 48 8-56 5-56 (64)
98 2o8x_A Probable RNA polymerase 70.4 5.9 0.0002 27.2 4.4 47 67-115 16-62 (70)
99 3hug_A RNA polymerase sigma fa 68.0 7.3 0.00025 28.9 4.7 46 70-116 40-85 (92)
100 1ku3_A Sigma factor SIGA; heli 65.6 8.4 0.00029 27.2 4.5 45 67-113 11-59 (73)
101 2eqy_A RBP2 like, jumonji, at 64.8 27 0.00093 27.9 7.9 43 74-116 46-100 (122)
102 2q1z_A RPOE, ECF SIGE; ECF sig 63.6 8.7 0.0003 31.1 4.8 35 80-115 148-182 (184)
103 2li6_A SWI/SNF chromatin-remod 63.5 4.5 0.00015 32.2 2.9 39 75-113 54-100 (116)
104 2lm1_A Lysine-specific demethy 60.5 11 0.00036 29.3 4.5 42 74-115 48-101 (107)
105 2cxy_A BAF250B subunit, HBAF25 60.4 16 0.00056 29.2 5.8 42 74-115 55-108 (125)
106 1or7_A Sigma-24, RNA polymeras 60.3 13 0.00045 30.2 5.3 36 81-117 154-189 (194)
107 2jrz_A Histone demethylase jar 57.5 8.9 0.00031 30.5 3.7 40 74-113 44-95 (117)
108 1kkx_A Transcription regulator 54.5 6.9 0.00024 31.7 2.5 42 75-116 53-102 (123)
109 2p7v_B Sigma-70, RNA polymeras 52.6 8.5 0.00029 26.8 2.5 42 71-113 9-54 (68)
110 1rp3_A RNA polymerase sigma fa 50.0 22 0.00075 29.7 5.2 43 73-116 193-235 (239)
111 3mzy_A RNA polymerase sigma-H 49.1 19 0.00064 28.1 4.3 36 81-117 122-157 (164)
112 3cz6_A DNA-binding protein RAP 48.7 12 0.0004 32.2 3.1 28 6-36 110-145 (168)
113 2y9y_A Imitation switch protei 46.0 27 0.00094 33.5 5.6 41 66-106 125-167 (374)
114 3c57_A Two component transcrip 45.7 29 0.00098 25.9 4.7 44 66-112 27-70 (95)
115 1xsv_A Hypothetical UPF0122 pr 44.9 38 0.0013 26.3 5.5 47 67-115 26-72 (113)
116 1x3u_A Transcriptional regulat 43.4 31 0.001 24.1 4.3 43 67-112 17-59 (79)
117 2kk0_A AT-rich interactive dom 43.1 21 0.00072 29.5 3.8 42 74-115 68-122 (145)
118 1c20_A DEAD ringer protein; DN 42.6 35 0.0012 27.4 5.0 43 74-116 56-111 (128)
119 2jpc_A SSRB; DNA binding prote 42.1 42 0.0014 22.2 4.7 39 72-112 3-41 (61)
120 2rq5_A Protein jumonji; develo 41.9 22 0.00074 28.7 3.6 38 74-111 46-96 (121)
121 2yqf_A Ankyrin-1; death domain 41.1 30 0.001 26.9 4.3 36 67-103 13-48 (111)
122 2jxj_A Histone demethylase jar 41.0 15 0.00051 27.9 2.4 38 75-112 41-90 (96)
123 3ulq_B Transcriptional regulat 40.2 38 0.0013 25.3 4.6 44 66-112 29-72 (90)
124 1tty_A Sigma-A, RNA polymerase 39.9 30 0.001 25.3 3.9 42 71-113 22-67 (87)
125 1fse_A GERE; helix-turn-helix 39.2 37 0.0013 23.2 4.1 44 66-112 11-54 (74)
126 1je8_A Nitrate/nitrite respons 38.3 30 0.001 25.1 3.6 44 66-112 21-64 (82)
127 1ig6_A MRF-2, modulator recogn 35.1 13 0.00044 29.0 1.2 38 74-111 37-87 (107)
128 1s7o_A Hypothetical UPF0122 pr 34.9 66 0.0022 25.0 5.4 46 67-114 23-68 (113)
129 2rnj_A Response regulator prot 34.1 36 0.0012 24.9 3.6 44 66-112 29-72 (91)
130 2li6_A SWI/SNF chromatin-remod 33.9 7.6 0.00026 30.9 -0.3 39 20-59 53-98 (116)
131 2lfw_A PHYR sigma-like domain; 32.4 24 0.0008 28.4 2.4 46 70-116 96-141 (157)
132 2rq5_A Protein jumonji; develo 32.3 13 0.00045 30.0 0.8 57 20-80 46-113 (121)
133 1ntc_A Protein (nitrogen regul 29.2 79 0.0027 23.4 4.8 35 69-104 50-84 (91)
134 2o71_A Death domain-containing 28.6 47 0.0016 26.3 3.6 29 74-103 26-54 (115)
135 2of5_H Leucine-rich repeat and 27.9 40 0.0014 26.6 3.0 31 72-103 13-43 (118)
136 2cuf_A FLJ21616 protein; homeo 27.8 1.7E+02 0.0059 21.7 6.6 52 66-118 13-83 (95)
137 3e7l_A Transcriptional regulat 27.1 64 0.0022 22.1 3.7 32 69-101 18-49 (63)
138 2of5_A Death domain-containing 27.0 45 0.0015 26.4 3.2 29 74-103 26-54 (114)
139 1wxp_A THO complex subunit 1; 26.9 62 0.0021 25.0 4.0 30 73-103 19-48 (110)
140 1p4w_A RCSB; solution structur 26.0 1.1E+02 0.0036 23.3 5.1 44 66-112 34-77 (99)
141 3i4p_A Transcriptional regulat 24.2 49 0.0017 26.9 3.0 40 70-110 3-43 (162)
142 3t72_q RNA polymerase sigma fa 23.9 1.2E+02 0.004 23.1 5.0 32 83-115 39-70 (99)
143 3cz6_A DNA-binding protein RAP 22.8 65 0.0022 27.6 3.5 17 59-76 110-126 (168)
144 2dbb_A Putative HTH-type trans 22.3 1.3E+02 0.0046 23.6 5.3 41 70-111 9-50 (151)
145 1tc3_C Protein (TC3 transposas 20.6 1.5E+02 0.005 17.7 4.6 38 66-105 5-42 (51)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.2e-33 Score=227.30 Aligned_cols=104 Identities=50% Similarity=0.966 Sum_probs=97.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcc
Q 038795 7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKW 86 (302)
Q Consensus 7 ~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kW 86 (302)
+++||+||+|||++|+++|.+||.++|..|| ..|++|+++||++||.++|+|.++++ +||.|||.+|+++|.+||++|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l~p~~~~~-~Wt~eEd~~L~~~~~~~G~~W 78 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHLNPEVKKT-SWTEEEDRIIYQAHKRLGNRW 78 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTTCCCCCCC-CCCHHHHHHHHHHHHHHSSCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhccCCccccc-CCCHHHHHHHHHHHHHhCCCH
Confidence 4789999999999999999999988999995 55999999999999999999999999 999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 87 ARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 87 s~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
+.||++|||||+++|||||+.++++.
T Consensus 79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 79 AEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999988753
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=9.2e-34 Score=229.55 Aligned_cols=104 Identities=33% Similarity=0.661 Sum_probs=98.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhh
Q 038795 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARI 89 (302)
Q Consensus 10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~I 89 (302)
||+||+|||++|+++|..||..+|..||. .|++|+++||++||.++|+|.++++ +||.|||.+|+++|.+||++|+.|
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~p~i~~~-~WT~eEd~~L~~~~~~~G~~W~~I 78 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTD-PWSPEEDMLLDQKYAEYGPKWNKI 78 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHSSSCCTTC-CCCHHHHHHHHHHHHHTCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHHccccccc-ccCHHHHHHHHHHHHHhCcCHHHH
Confidence 68999999999999999999889999965 5999999999999999999999999 999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795 90 ATYLPGRTDNDVKNFWSSRQKRLARI 115 (302)
Q Consensus 90 Ak~LpgRT~nq~KnRw~~l~kr~~r~ 115 (302)
|++|+|||+++||+||+.++++..+.
T Consensus 79 a~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 79 SKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 99999999999999999999887554
No 3
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=7.8e-33 Score=230.25 Aligned_cols=106 Identities=33% Similarity=0.695 Sum_probs=99.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 038795 4 KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFG 83 (302)
Q Consensus 4 kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G 83 (302)
.++..+||+||+|||++|+++|.+||. +|..|| ..+++|+++|||+||.++|+|.++++ +||.|||++|+++|.+||
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~p~~~~~-~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYLAPSISHT-PWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHTSTTSCCS-CCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhcccccccc-cCCHHHHHHHHHHHHHHC
Confidence 456799999999999999999999996 999995 45999999999999999999999999 899999999999999999
Q ss_pred CcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 84 NKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 84 ~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
++|+.||++|+|||+++||+||+.+++++
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988765
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=8.3e-33 Score=231.32 Aligned_cols=101 Identities=38% Similarity=0.752 Sum_probs=96.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhh
Q 038795 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARI 89 (302)
Q Consensus 10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~I 89 (302)
||+||+|||++|+++|..||.++|..|| ..|++|+++||++||.++|+|.++++ +||.|||.+|+++|.+||++|+.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~p~~~~~-~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLDPAVVKH-AWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHTSTTCCCS-CCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhccCccccCC-CCCHHHHHHHHHHHHHHCcCHHHH
Confidence 7999999999999999999999999995 55999999999999999999999999 899999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHHH
Q 038795 90 ATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 90 Ak~LpgRT~nq~KnRw~~l~kr~ 112 (302)
|++|+|||+++|||||+.++++.
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGG
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=1.7e-32 Score=228.24 Aligned_cols=106 Identities=50% Similarity=0.977 Sum_probs=100.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 038795 4 KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFG 83 (302)
Q Consensus 4 kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G 83 (302)
.++.+++|+||+|||++|+++|.+||.++|..||. .|+||++.||++||.++|+|.++++ +||+|||.+|++++.+||
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l~p~~~~~-~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHLNPEVKKT-SWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTTCSSSCCS-CCCHHHHHHHHHHHHHHC
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhcccccccc-cCCHHHHHHHHHHHHHHC
Confidence 35789999999999999999999999889999954 5999999999999999999999999 999999999999999999
Q ss_pred CcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795 84 NKWARIATYLPGRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 84 ~kWs~IAk~LpgRT~nq~KnRw~~l~kr 111 (302)
++|+.||++|||||+++|||||+.++++
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999988765
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.1e-30 Score=222.73 Aligned_cols=105 Identities=50% Similarity=0.963 Sum_probs=99.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGN 84 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~ 84 (302)
.+.+++|+||+|||++|+++|..||..+|..|| ..|++|++.||++||.++|+|.++++ +||++||.+|++++.+||+
T Consensus 53 ~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l~p~~~~~-~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 53 NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHLNPEVKKT-SWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp CTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTTCTTSCCS-CCCHHHHHHHHHHHHHHCS
T ss_pred CCCcCCCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHhCcccccc-CCChHHHHHHHHHHHHHCC
Confidence 467899999999999999999999988899995 56999999999999999999999998 9999999999999999999
Q ss_pred cchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795 85 KWARIATYLPGRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 85 kWs~IAk~LpgRT~nq~KnRw~~l~kr 111 (302)
+|+.||++|||||+++|||||+.++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999998765
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=9.2e-29 Score=212.50 Aligned_cols=101 Identities=35% Similarity=0.674 Sum_probs=58.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC-c
Q 038795 7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGN-K 85 (302)
Q Consensus 7 ~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~-k 85 (302)
+++||+||+|||++|+++|.+||..+|..|| ..+++|+++||++||.++|+|.++++ +||.|||.+|+++|.+||. +
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l~p~~~~~-~Wt~eEd~~L~~~v~~~g~~~ 80 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLNPELIKG-PWTKEEDQRVIKLVQKYGPKR 80 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCS-CCCHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHccCCCcCCC-CCChHHHHHHHHHHHHhCccc
Confidence 4789999999999999999999988999995 45899999999999999999999999 9999999999999999995 7
Q ss_pred chhhhccCCCCCHHHHHHHHHHHH
Q 038795 86 WARIATYLPGRTDNDVKNFWSSRQ 109 (302)
Q Consensus 86 Ws~IAk~LpgRT~nq~KnRw~~l~ 109 (302)
|..||++|+|||++||++||+.++
T Consensus 81 W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 81 WSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHh
Confidence 999999999999999999998765
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.9e-21 Score=143.44 Aligned_cols=66 Identities=35% Similarity=0.664 Sum_probs=61.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHH
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEE 72 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED 72 (302)
.+.+++|+||+|||++|+++|.+||..+|..||. .|++|+++|||+||.++|+|.++++ +||.|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L~p~i~~~-~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWLDPSIKKT-EWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTSCSSSCCC-CSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHcCCcccCC-CCChHhc
Confidence 3578999999999999999999999889999965 5899999999999999999999999 9999987
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.78 E-value=1.2e-19 Score=150.58 Aligned_cols=72 Identities=31% Similarity=0.659 Sum_probs=48.5
Q ss_pred ccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC-cchhhhccCCCCCHHHHHHHHHHHH
Q 038795 36 IRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGN-KWARIATYLPGRTDNDVKNFWSSRQ 109 (302)
Q Consensus 36 Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~LpgRT~nq~KnRw~~l~ 109 (302)
|| ..|+||++.||+.||.++|+|.++++ +||.|||++|+++|.+||. +|..||.+|+|||+.||++||+.++
T Consensus 1 Ia-~~~~~Rt~~qC~~Rw~~~l~p~~~k~-~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 1 ME-AVIKNRTDVQCQHRWQKVLNPELNKG-PWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp ----------------------CTTCCCS-CCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred Cc-cccCCCCHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 53 45999999999999999999999999 8999999999999999995 7999999999999999999998765
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.73 E-value=1.9e-18 Score=157.45 Aligned_cols=105 Identities=23% Similarity=0.302 Sum_probs=90.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-----cccccccccCCCCccccccccccccCCCCC------------------
Q 038795 6 EEIRKGPWKAEEDEVLINHVKKYGPRD-----WSSIRSKGLLQRTGKSCRLRWVNKLRPNLK------------------ 62 (302)
Q Consensus 6 ~~lrKG~WT~EED~~L~~~V~~~G~~n-----W~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk------------------ 62 (302)
..++|++||+|||++|+++|+++|.++ |..|| +.|+|||+.|||.||..+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 468899999999999999999998643 99995 579999999999999999999885
Q ss_pred -----------CCCCCCHHHHHHHHHHHHH-h--------------------------------C---------------
Q 038795 63 -----------NGCKFSLEEERIVIELQAQ-F--------------------------------G--------------- 83 (302)
Q Consensus 63 -----------~~~~WT~EED~lLlelv~~-~--------------------------------G--------------- 83 (302)
+. .||.+||-.|...+.+ + |
T Consensus 83 ~ikis~lp~siK~-rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 83 LIKTKVLPPSIKR-KFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp BCEESSCCCCSCC-CCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred ceeeeccCccccC-ccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 55 7999999999998876 1 1
Q ss_pred ----------CcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 84 ----------NKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 84 ----------~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
..|..||+.+|+||.+++|+||+.++++.
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 16999999999999999999999888764
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.71 E-value=1.7e-18 Score=143.73 Aligned_cols=84 Identities=17% Similarity=0.340 Sum_probs=77.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc---cCCCCccccccccccccC-----CCCCCCCCCCHHHHHHHH
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG---LLQRTGKSCRLRWVNKLR-----PNLKNGCKFSLEEERIVI 76 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~---l~~Rt~~qCR~Rw~~~L~-----p~lk~~~~WT~EED~lLl 76 (302)
++..++++||.|||+.|+++|++||.++|..|+... +++||+.+|++||.++|+ |.++++.+|+++|+.+|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 457899999999999999999999988999996543 489999999999999998 999998789999999999
Q ss_pred HHHHHhCCcchh
Q 038795 77 ELQAQFGNKWAR 88 (302)
Q Consensus 77 elv~~~G~kWs~ 88 (302)
+++..+||+|++
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999987
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-18 Score=130.27 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=47.2
Q ss_pred cccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHH
Q 038795 49 CRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQ 109 (302)
Q Consensus 49 CR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~ 109 (302)
..-||.++|+|.++++ +||+|||++|+++|.+||++|+.||+.| |||+++|||||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~-~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVG-KYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCC-SSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCC-CCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4458999999999999 9999999999999999999999999999 999999999998764
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=1.9e-17 Score=120.59 Aligned_cols=58 Identities=31% Similarity=0.595 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCC
Q 038795 4 KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLK 62 (302)
Q Consensus 4 kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk 62 (302)
..+.++||+||+|||++|+++|.+||.++|..||. .|++|++.||++||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHcCCccC
Confidence 45789999999999999999999999889999965 59999999999999999999884
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=2.2e-17 Score=117.03 Aligned_cols=52 Identities=56% Similarity=1.062 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC
Q 038795 8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60 (302)
Q Consensus 8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~ 60 (302)
++||+||+|||++|+++|.+||.++|..|| +.|++|+++|||+||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHcCcC
Confidence 589999999999999999999987899995 5599999999999999999984
No 15
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.66 E-value=3.8e-17 Score=135.70 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=72.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc---cCCCCcccccccccccc-----CCCCCCCCCCCHHH-HHHH
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG---LLQRTGKSCRLRWVNKL-----RPNLKNGCKFSLEE-ERIV 75 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~---l~~Rt~~qCR~Rw~~~L-----~p~lk~~~~WT~EE-D~lL 75 (302)
+...++++||.|||+.|+++|++||.++|..|+... +.+||+.+|++||.+++ +|.++++ .|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~-~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRG-APVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCC-SSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCC-CCCCHHHHHHH
Confidence 346789999999999999999999988999996542 48999999999999999 7999998 899999 8999
Q ss_pred HHHHHHhCCc
Q 038795 76 IELQAQFGNK 85 (302)
Q Consensus 76 lelv~~~G~k 85 (302)
++++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999975
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=116.54 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=55.1
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795 55 NKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARI 115 (302)
Q Consensus 55 ~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~ 115 (302)
.+|+|.++++ .||.|||++|+++|.+||++|..||+ ++|||++|||+||+.+++...++
T Consensus 1 g~L~P~~~k~-~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 1 GSSGSSGKKT-EWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp CCCSSSSSCC-CCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCC-CCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence 3799999999 89999999999999999999999999 88999999999999999887654
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=5e-17 Score=115.06 Aligned_cols=52 Identities=38% Similarity=0.701 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC
Q 038795 8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60 (302)
Q Consensus 8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~ 60 (302)
++||+||+|||++|+++|.+||.++|..||. .|++|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999779999954 599999999999999999984
No 18
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.63 E-value=2.8e-16 Score=118.64 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=53.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 038795 57 LRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114 (302)
Q Consensus 57 L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r 114 (302)
++|.++++ +||.|||++|+++|.+||++|..||++|+|||++|||+||+.++++..+
T Consensus 3 ~~p~~~~~-~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 3 SGSSGYSV-KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp CCCSSCCC-CCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCcCCC-CCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 56888888 8999999999999999999999999999999999999999999887644
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=1.1e-16 Score=119.90 Aligned_cols=61 Identities=30% Similarity=0.460 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccC--CCCccccccccccccCCCCCCC
Q 038795 3 GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLL--QRTGKSCRLRWVNKLRPNLKNG 64 (302)
Q Consensus 3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~--~Rt~~qCR~Rw~~~L~p~lk~~ 64 (302)
.+++..++|+||+|||++|+++|++||.++|..||. .++ +|++.||++||.++|+|.+.++
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 356678999999999999999999999889999965 488 9999999999999999999877
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=4.9e-16 Score=115.32 Aligned_cols=56 Identities=29% Similarity=0.534 Sum_probs=48.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc-cCCCCccccccccccccCCCC
Q 038795 6 EEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG-LLQRTGKSCRLRWVNKLRPNL 61 (302)
Q Consensus 6 ~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~-l~~Rt~~qCR~Rw~~~L~p~l 61 (302)
...+|++||+|||++|+++|++||.++|..||... +.+|++.||++||.+++++.|
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 34678999999999999999999988999996542 349999999999999999876
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=7.5e-16 Score=112.50 Aligned_cols=57 Identities=18% Similarity=0.447 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC
Q 038795 3 GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60 (302)
Q Consensus 3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~ 60 (302)
|..+.+.+++||+|||++|+++|++||.++|..|| +.|++|++.|||+||.++|.+.
T Consensus 1 gss~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 1 GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHccCC
Confidence 34567999999999999999999999988999995 4599999999999999999764
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=3.4e-15 Score=108.65 Aligned_cols=52 Identities=27% Similarity=0.456 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHHH
Q 038795 58 RPNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQK 110 (302)
Q Consensus 58 ~p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~k 110 (302)
+|.++++ +||+|||++|+++|.+|| ++|+.||++|+|||+.||++||+.+++
T Consensus 3 ~p~~~k~-~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 3 SGSSGKV-KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp SCCCCCS-CCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 4678888 899999999999999999 699999999999999999999988753
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.55 E-value=5e-15 Score=104.71 Aligned_cols=49 Identities=33% Similarity=0.594 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-cchhhhccCCCCCHHHHHHHHHHHHH
Q 038795 61 LKNGCKFSLEEERIVIELQAQFGN-KWARIATYLPGRTDNDVKNFWSSRQK 110 (302)
Q Consensus 61 lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~LpgRT~nq~KnRw~~l~k 110 (302)
|+++ +||.|||.+|+++|.+||. +|+.||++|+|||++||++||+.+++
T Consensus 1 i~~~-~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 1 LGKT-RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp --CC-CCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCC-CCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 3567 8999999999999999997 99999999999999999999998763
No 24
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1e-15 Score=116.10 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCC-----CCcccccccccCCCCccccccccccccCCCCCCC
Q 038795 3 GKREEIRKGPWKAEEDEVLINHVKKYGP-----RDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64 (302)
Q Consensus 3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~-----~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~ 64 (302)
|.++.+++|+||+|||++|+++|.+||. .+|..||. .|++||+.||++||++||.+.++.+
T Consensus 1 gs~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 1 GSSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5688999999999999999999999996 78999955 5999999999999999999888776
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.53 E-value=1.6e-15 Score=107.99 Aligned_cols=49 Identities=33% Similarity=0.554 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccC--CCCccccccccccccC
Q 038795 9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLL--QRTGKSCRLRWVNKLR 58 (302)
Q Consensus 9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~--~Rt~~qCR~Rw~~~L~ 58 (302)
+||+||+|||++|+++|.+||.++|..||. .++ +|++.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHHc
Confidence 589999999999999999999889999965 488 9999999999999885
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.52 E-value=9.9e-15 Score=103.24 Aligned_cols=48 Identities=29% Similarity=0.645 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-cchhhhccCCCCCHHHHHHHHHHHH
Q 038795 61 LKNGCKFSLEEERIVIELQAQFGN-KWARIATYLPGRTDNDVKNFWSSRQ 109 (302)
Q Consensus 61 lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~LpgRT~nq~KnRw~~l~ 109 (302)
|+++ +||+|||++|+++|.+||. +|..||++|+|||++||++||+.++
T Consensus 1 l~k~-~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 1 LIKG-PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCC-SCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCC-CCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4577 8999999999999999996 6999999999999999999998765
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=1.2e-14 Score=103.43 Aligned_cols=49 Identities=22% Similarity=0.410 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCC--CCCHHHHHHHHHHHHHH
Q 038795 62 KNGCKFSLEEERIVIELQAQFG-NKWARIATYLP--GRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 62 k~~~~WT~EED~lLlelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRw~~l~kr 111 (302)
+++ +||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||..+++.
T Consensus 1 kr~-~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCC-CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCC-CCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 356 899999999999999999 79999999999 99999999999998763
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.1e-14 Score=106.29 Aligned_cols=50 Identities=14% Similarity=0.308 Sum_probs=46.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHH
Q 038795 59 PNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQ 109 (302)
Q Consensus 59 p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~ 109 (302)
+.+.++ +||+|||++|+++|.+|| ++|..||++|+|||+.||++||+.++
T Consensus 4 ~~~~~~-~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 4 GSSGDP-SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54 (60)
T ss_dssp CCCCCS-SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCCCC-CCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 567777 899999999999999999 89999999999999999999998765
No 29
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.51 E-value=2.3e-14 Score=107.11 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=49.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCC--CCCHHHHHHHHHHHHHH
Q 038795 57 LRPNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLP--GRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 57 L~p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRw~~l~kr 111 (302)
..+..+++ .||+|||++|+++|.+|| ++|+.||++|+ |||+.||++||+.+++.
T Consensus 4 ~~~~~~r~-~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 4 KHRARKRQ-AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TTCSSSCC-CCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 45566677 899999999999999999 79999999999 99999999999998864
No 30
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-15 Score=113.00 Aligned_cols=57 Identities=23% Similarity=0.406 Sum_probs=52.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCC
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~ 64 (302)
.+.++||+||+|||++|+++|+.||. +|..|| + ++|||+.|||+||.++|++.++++
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia-~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIA-P-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHH-H-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHh-c-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 57899999999999999999999995 899995 4 789999999999999999987665
No 31
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.47 E-value=6.7e-15 Score=106.88 Aligned_cols=50 Identities=24% Similarity=0.474 Sum_probs=45.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccC-CCCcccccccccccc
Q 038795 7 EIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLL-QRTGKSCRLRWVNKL 57 (302)
Q Consensus 7 ~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~-~Rt~~qCR~Rw~~~L 57 (302)
.+.+++||+|||++|+++|++||.++|..|| +.|+ +||+.|||+||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999999999999995 4588 999999999999875
No 32
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.21 E-value=3.4e-15 Score=117.36 Aligned_cols=57 Identities=26% Similarity=0.323 Sum_probs=53.1
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHH
Q 038795 56 KLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLA 113 (302)
Q Consensus 56 ~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~ 113 (302)
.+.|.++++ +||.|||.+|+++|.+||++|+.||.+|+|||++|||+||+.++++..
T Consensus 9 ~~~p~~~~~-~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 9 SGRENLYFQ-GWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 567888888 899999999999999999999999999999999999999999988753
No 33
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.2e-14 Score=105.95 Aligned_cols=52 Identities=25% Similarity=0.482 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHHH
Q 038795 58 RPNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQK 110 (302)
Q Consensus 58 ~p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~k 110 (302)
.+.++++ .||.|||++|+++|.+|| ++|..||.+|+|||+.||++||+.+++
T Consensus 4 ~~~~k~~-~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 4 GSSGKGG-VWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSCSTTC-CCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 4667788 899999999999999999 899999999999999999999988764
No 34
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.46 E-value=7.1e-14 Score=103.63 Aligned_cols=48 Identities=29% Similarity=0.567 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCC--CCCHHHHHHHHHHHHH
Q 038795 62 KNGCKFSLEEERIVIELQAQFG-NKWARIATYLP--GRTDNDVKNFWSSRQK 110 (302)
Q Consensus 62 k~~~~WT~EED~lLlelv~~~G-~kWs~IAk~Lp--gRT~nq~KnRw~~l~k 110 (302)
+++ +||+|||++|+++|.+|| ++|+.||+.++ |||+.|||+||++++|
T Consensus 10 kk~-~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 10 KKQ-KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCC-CCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 455 899999999999999999 68999999865 9999999999998875
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.45 E-value=7.1e-14 Score=101.45 Aligned_cols=49 Identities=22% Similarity=0.498 Sum_probs=44.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CcchhhhccCC-CCCHHHHHHHHHHH
Q 038795 59 PNLKNGCKFSLEEERIVIELQAQFG-NKWARIATYLP-GRTDNDVKNFWSSR 108 (302)
Q Consensus 59 p~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk~Lp-gRT~nq~KnRw~~l 108 (302)
..+.++ .||++||++|+++|.+|| ++|..||++|+ |||+.||++||..+
T Consensus 5 ~p~~~~-~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 5 SSGFDE-NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCSCCC-CCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCC-CCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 345567 899999999999999999 89999999999 99999999999875
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.5e-14 Score=108.41 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC------CcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 58 RPNLKNGCKFSLEEERIVIELQAQFG------NKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 58 ~p~lk~~~~WT~EED~lLlelv~~~G------~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
+|.+.++ .||.|||++|+++|.+|| ++|..||++|+|||+.||++||+.++++.
T Consensus 3 ~p~~~~~-~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 3 SGSSGNQ-LWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCCCSS-CCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCC-CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 4677788 899999999999999999 78999999999999999999998877654
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=1e-14 Score=109.97 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=52.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCC
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNG 64 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~ 64 (302)
.+.+++|+||+|||++|+++|+.|| .+|..||. .|++||+.||+.||+++|++.++.+
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~~g 61 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISK-LIGSRTVLQVKSYARQYFKNKVKCG 61 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHH-HHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999 58999954 6999999999999999998877654
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.44 E-value=5e-14 Score=114.19 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=66.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc---cCCCCcccccccccccc-----CCCCCCCCCCCHHHHHH
Q 038795 3 GKREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKG---LLQRTGKSCRLRWVNKL-----RPNLKNGCKFSLEEERI 74 (302)
Q Consensus 3 ~kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~---l~~Rt~~qCR~Rw~~~L-----~p~lk~~~~WT~EED~l 74 (302)
..++..++++||+|||+.|+++|++||.++|..|+... +++||+.+|++||.+++ +|.++++.+.-.+--.+
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 45567899999999999999999999988999996542 38999999999999998 68998985554444455
Q ss_pred HHHHHHHhCC
Q 038795 75 VIELQAQFGN 84 (302)
Q Consensus 75 Llelv~~~G~ 84 (302)
+++|+..+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 39
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.43 E-value=6.5e-14 Score=109.07 Aligned_cols=71 Identities=20% Similarity=0.365 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc---ccCCCCcccccccccccc-----CCCCCCCCCCCHHHHHHHHHHHHH
Q 038795 11 GPWKAEEDEVLINHVKKYGPRDWSSIRSK---GLLQRTGKSCRLRWVNKL-----RPNLKNGCKFSLEEERIVIELQAQ 81 (302)
Q Consensus 11 G~WT~EED~~L~~~V~~~G~~nW~~Ias~---~l~~Rt~~qCR~Rw~~~L-----~p~lk~~~~WT~EED~lLlelv~~ 81 (302)
++||+|||+.|+++|++||.++|..|+.. .+++||+.+|++||.+++ .|.++++.+...+....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998899999643 379999999999999988 688888889999998999988854
No 40
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.35 E-value=8.5e-13 Score=100.40 Aligned_cols=50 Identities=12% Similarity=0.300 Sum_probs=45.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CcchhhhccCCCCCHHHHHHHHHHHHH
Q 038795 60 NLKNGCKFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFWSSRQK 110 (302)
Q Consensus 60 ~lk~~~~WT~EED~lLlelv~~~G----~kWs~IAk~LpgRT~nq~KnRw~~l~k 110 (302)
.+.++ .||.+||.+|++++.+|| ++|.+||++|||||++||++||+.+++
T Consensus 15 ~~~~~-~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEE-PWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSC-CCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccCCC-CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44566 899999999999999999 789999999999999999999998864
No 41
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.34 E-value=2.4e-13 Score=103.42 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=45.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCC
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 61 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~l 61 (302)
.+.++||+||+|||++|+++|.+|| .+|..||.. + |||+.||+.||.. |....
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~-l-gRt~~q~knRw~~-L~~~~ 70 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAA-L-GRSASSVKDRCRL-MKDTC 70 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHH-H-TSCHHHHHHHHHH-CSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHH-h-CCCHHHHHHHHHH-HHHHc
Confidence 4789999999999999999999999 559999654 7 9999999999974 44443
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.32 E-value=3.9e-13 Score=111.90 Aligned_cols=82 Identities=24% Similarity=0.368 Sum_probs=58.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGN 84 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~ 84 (302)
.+.+++|+||+|||++|+++|..|| .+|..|| +.|+|||+.||+.||.++|++.+..+ .|+.+- +......+.
T Consensus 49 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia-~~l~gRt~~~~k~rw~~~l~~~~~~~-~~~~~~----~~p~~~kk~ 121 (131)
T 3zqc_A 49 DPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIA-KLIPGRTDNAIKNRWNSSISKRISTN-SNHKEI----LLPDRSKKR 121 (131)
T ss_dssp STTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHT-TTSTTCCHHHHHHHHHHTTGGGCCCC-TTSCCC----CCCCCC---
T ss_pred CccccCCCCCHHHHHHHHHHHHHHC-cCHHHHH-HHcCCCCHHHHHHHHHHHHHHHhhcC-CCcccc----cCchhhhhh
Confidence 4678999999999999999999999 7899995 56999999999999999999999877 676551 111112245
Q ss_pred cchhhhccC
Q 038795 85 KWARIATYL 93 (302)
Q Consensus 85 kWs~IAk~L 93 (302)
+|+.|++.|
T Consensus 122 ~~~~i~k~~ 130 (131)
T 3zqc_A 122 KAADVPKKL 130 (131)
T ss_dssp ---------
T ss_pred hhhhcchhc
Confidence 688777655
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=4e-13 Score=103.58 Aligned_cols=51 Identities=20% Similarity=0.490 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccc
Q 038795 4 KREEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNK 56 (302)
Q Consensus 4 kK~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~ 56 (302)
++....+++||+|||++|+++|++|| .+|..|| ++|++||..||+.||.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHh
Confidence 34457789999999999999999999 8999995 569999999999999998
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=100.14 Aligned_cols=46 Identities=11% Similarity=0.330 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHH
Q 038795 62 KNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSR 108 (302)
Q Consensus 62 k~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l 108 (302)
.++ .||.|||.+|++++.+||++|..||++|++||+.||++||..+
T Consensus 17 ~~~-~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGR-EWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSC-CCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cCC-CcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 355 8999999999999999999999999999999999999999754
No 45
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.93 E-value=4e-13 Score=105.55 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCC
Q 038795 6 EEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59 (302)
Q Consensus 6 ~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p 59 (302)
+.+++|+||+|||++|+++|..|| .+|..|| ..|+|||+.||+.||.++|+.
T Consensus 12 p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA-~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 12 ENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIA-RMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 568999999999999999999999 4899995 569999999999999999864
No 46
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=4.1e-12 Score=93.62 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcchhhh---ccCCCCCHHHHHHHHHHHHHH
Q 038795 63 NGCKFSLEEERIVIELQAQFGNKWARIA---TYLPGRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 63 ~~~~WT~EED~lLlelv~~~G~kWs~IA---k~LpgRT~nq~KnRw~~l~kr 111 (302)
+. +||+||++.|+++|++||.+|+.|+ .++++||+.+||+||+.++|+
T Consensus 8 r~-~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 8 RK-DFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp SS-SCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CC-CCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 44 8999999999999999999999999 678999999999999998764
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.27 E-value=5.8e-12 Score=98.01 Aligned_cols=48 Identities=23% Similarity=0.445 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHhCC-cchhhhcc----CCCCCHHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGN-KWARIATY----LPGRTDNDVKNFWSSRQKRLA 113 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~-kWs~IAk~----LpgRT~nq~KnRw~~l~kr~~ 113 (302)
+||.|||+.|+++|++||. +|+.|++. |+|||+++||+||++++++..
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 7999999999999999996 99999985 899999999999999988653
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.24 E-value=1e-12 Score=99.96 Aligned_cols=54 Identities=17% Similarity=0.450 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC---CCCcccccccccCCCCccccccccccccC
Q 038795 4 KREEIRKGPWKAEEDEVLINHVKKYG---PRDWSSIRSKGLLQRTGKSCRLRWVNKLR 58 (302)
Q Consensus 4 kK~~lrKG~WT~EED~~L~~~V~~~G---~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~ 58 (302)
++....+++||.|||++|+++|..|| ..+|..|| ++|+|||..||+.||.+++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHH
Confidence 34568899999999999999999999 35799995 56999999999999998764
No 49
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.23 E-value=2.7e-12 Score=102.57 Aligned_cols=54 Identities=30% Similarity=0.625 Sum_probs=47.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCC
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPN 60 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~ 60 (302)
.+.+++|+||+|||++|+++|.+|| .+|..|| +.|+|||+.||+.||..+|+..
T Consensus 51 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia-~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 51 NPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIA-KLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHH-TTCTTCCHHHHHHHHHHHTC--
T ss_pred CCcccccCCCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999 6899995 5699999999999999988754
No 50
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.22 E-value=1.1e-11 Score=102.44 Aligned_cols=51 Identities=27% Similarity=0.511 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHH
Q 038795 58 RPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQ 109 (302)
Q Consensus 58 ~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~ 109 (302)
.+.++++ .||+|||++|+++|.+||.+|..||..|+|||+.||+.||..++
T Consensus 6 ~~~~kk~-~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 6 LKAAKKQ-KFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp -CBCSSC-CCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred cCCCCCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 4567788 89999999999999999999999999999999999999998765
No 51
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.21 E-value=1.9e-11 Score=97.05 Aligned_cols=51 Identities=24% Similarity=0.422 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHhC----CcchhhhccCCCCCHHHHHHHHHHHHHHHHHHh
Q 038795 66 KFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFWSSRQKRLARIL 116 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G----~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~~ 116 (302)
.||.|||++|++++.+|| ++|.+||++|||||+++|++||+.++..+..+.
T Consensus 10 ~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ie 64 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIE 64 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999996 789999999999999999999999988765543
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.20 E-value=1.8e-11 Score=101.47 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=49.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCC-cchhhhcc----CCCCCHHHHHHHHHHHHHHH
Q 038795 57 LRPNLKNGCKFSLEEERIVIELQAQFGN-KWARIATY----LPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 57 L~p~lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~----LpgRT~nq~KnRw~~l~kr~ 112 (302)
+.+..+++ +||.|||+.|+++|.+||. +|+.|++. |+|||+++||+||++++++.
T Consensus 11 ~~~rr~r~-~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRR-PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSC-CCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 45566677 8999999999999999996 99999987 49999999999999998864
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.19 E-value=2.4e-11 Score=98.42 Aligned_cols=52 Identities=19% Similarity=0.368 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-cchhhhccC----CCCCHHHHHHHHHHHHHHH
Q 038795 60 NLKNGCKFSLEEERIVIELQAQFGN-KWARIATYL----PGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 60 ~lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~L----pgRT~nq~KnRw~~l~kr~ 112 (302)
..+++ +||.|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||++++++.
T Consensus 10 rr~r~-~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 10 RRIRR-PFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCC-SCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCC-CCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 44566 8999999999999999996 999999865 8999999999999988743
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.16 E-value=1.2e-11 Score=112.88 Aligned_cols=51 Identities=16% Similarity=0.426 Sum_probs=45.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------chhhhccCCCCCHHHHHHHHHHHHHH
Q 038795 60 NLKNGCKFSLEEERIVIELQAQFGNK------WARIATYLPGRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 60 ~lk~~~~WT~EED~lLlelv~~~G~k------Ws~IAk~LpgRT~nq~KnRw~~l~kr 111 (302)
.++++ .||+|||++|+++|.+||++ |..||++|+|||+++|||||+.++++
T Consensus 5 ~~~k~-~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 5 SHNKA-SFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp ---CC-CCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCC-CCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 45566 89999999999999999975 99999999999999999999998865
No 55
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.15 E-value=3.8e-12 Score=102.41 Aligned_cols=55 Identities=33% Similarity=0.622 Sum_probs=49.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccCCCC
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNL 61 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p~l 61 (302)
.+.+++|+||+|||++|+++|..|| .+|..|| +.|+|||+.||+.||..+++...
T Consensus 48 ~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 48 NPALRTDPWSPEEDMLLDQKYAEYG-PKWNKIS-KFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHH-HHHSSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHHHhC-cCHHHHH-HHCCCCCHHHHHHHHHHHHhhHH
Confidence 4678999999999999999999999 5899995 56999999999999998876543
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.10 E-value=8.5e-11 Score=97.54 Aligned_cols=51 Identities=20% Similarity=0.405 Sum_probs=45.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-cchhhhcc----CCCCCHHHHHHHHHHHHHHH
Q 038795 61 LKNGCKFSLEEERIVIELQAQFGN-KWARIATY----LPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 61 lk~~~~WT~EED~lLlelv~~~G~-kWs~IAk~----LpgRT~nq~KnRw~~l~kr~ 112 (302)
.+++ +||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||++++++.
T Consensus 29 r~r~-~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 29 RIRR-PFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCC-CCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3466 8999999999999999995 99999986 48999999999999998765
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.97 E-value=6.8e-10 Score=88.04 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=58.8
Q ss_pred cccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccC-----CCCCHHHHHHHHHHHHHHHHHHh
Q 038795 47 KSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYL-----PGRTDNDVKNFWSSRQKRLARIL 116 (302)
Q Consensus 47 ~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~L-----pgRT~nq~KnRw~~l~kr~~r~~ 116 (302)
.=+.++|.++|.+ . .||.||+..|++|+.+||.+|..|+..+ ++||..+||+||..+.+++.+..
T Consensus 18 ~yt~eeY~~~L~~----~-~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----D-AWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----T-TBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----C-CCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5678899999976 4 7999999999999999999999999988 58999999999999999887654
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=9.7e-10 Score=80.33 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHH
Q 038795 65 CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQ 109 (302)
Q Consensus 65 ~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~ 109 (302)
.+||++|++++++++.+||++|..||.+|++||..+|.++|....
T Consensus 13 ~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 13 NVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 389999999999999999999999999999999999999997643
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.91 E-value=1.7e-10 Score=91.49 Aligned_cols=48 Identities=19% Similarity=0.473 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccccccccCCCCcccccccccccc
Q 038795 9 RKGPWKAEEDEVLINHVKKYG---PRDWSSIRSKGLLQRTGKSCRLRWVNKL 57 (302)
Q Consensus 9 rKG~WT~EED~~L~~~V~~~G---~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L 57 (302)
.+++||.|||++|.+++.+|| ..+|..||. .|+|||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 468899999999999999997 457999954 599999999999998765
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.79 E-value=6e-09 Score=78.89 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=42.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----CcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795 62 KNGCKFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 62 k~~~~WT~EED~lLlelv~~~G----~kWs~IAk~LpgRT~nq~KnRw~~l~kr 111 (302)
+.+ .||.||+++|.+++.+|+ ++|.+||.++ |||..+|++||+.++..
T Consensus 7 ~~~-~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAP-EWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCC-CCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 344 799999999999999997 6899999998 99999999999888643
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.75 E-value=2.5e-09 Score=78.80 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccc--cccCCCCccccccccccccCC
Q 038795 8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRS--KGLLQRTGKSCRLRWVNKLRP 59 (302)
Q Consensus 8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias--~~l~~Rt~~qCR~Rw~~~L~p 59 (302)
.++++||+|||+.|+++|++||. +|..|+. ..+.+||...+++||.+..+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 46889999999999999999995 9999953 457899999999999987754
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.69 E-value=1e-08 Score=92.90 Aligned_cols=47 Identities=19% Similarity=0.484 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795 65 CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 65 ~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr 111 (302)
..||.||..++++++.+||++|..||+.+++||.+|||++|+...||
T Consensus 134 ~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 134 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp SSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999988776
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=5.2e-09 Score=76.41 Aligned_cols=50 Identities=14% Similarity=0.257 Sum_probs=43.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccccc
Q 038795 6 EEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL 57 (302)
Q Consensus 6 ~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L 57 (302)
..-..++||+||++++.+++.+|| ++|..|| ..|++|+..||+.+|....
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia-~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIA-SYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST-TCHHHHH-HHCTTSCHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHhc
Confidence 345668999999999999999999 7999996 6699999999999986543
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.53 E-value=3.1e-08 Score=75.23 Aligned_cols=48 Identities=10% Similarity=0.181 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----CcchhhhccCCCCCHHHHHHHHHHHH
Q 038795 62 KNGCKFSLEEERIVIELQAQFG----NKWARIATYLPGRTDNDVKNFWSSRQ 109 (302)
Q Consensus 62 k~~~~WT~EED~lLlelv~~~G----~kWs~IAk~LpgRT~nq~KnRw~~l~ 109 (302)
.....||.+|+++|.+++..|+ ++|..||..++|||..+|+.||..++
T Consensus 6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3344799999999999999998 47999999999999999999998773
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.52 E-value=3.2e-08 Score=98.37 Aligned_cols=46 Identities=20% Similarity=0.491 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr 111 (302)
.||.+|-.++++++.+||.+|..||+.++.||..|||++|..+.++
T Consensus 382 ~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 382 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999765544
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.43 E-value=4.1e-08 Score=71.54 Aligned_cols=49 Identities=22% Similarity=0.429 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccccccCCCCccccccccccccC
Q 038795 10 KGPWKAEEDEVLINHVKKY--------GPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 58 (302)
Q Consensus 10 KG~WT~EED~~L~~~V~~~--------G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~ 58 (302)
|.+||+|||+.|++.|..| |..-|..++...++++|..+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 6789999999999999999 544599997646999999999999999885
No 67
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.37 E-value=6.6e-08 Score=73.12 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=43.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccCCCCccccccccccccCC
Q 038795 7 EIRKGPWKAEEDEVLINHVKKYGP---RDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59 (302)
Q Consensus 7 ~lrKG~WT~EED~~L~~~V~~~G~---~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p 59 (302)
...++.||.|||++|.+++.+|+. .+|..||+. + ||+..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~-l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE-L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH-H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH-h-CCCHHHHHHHHHHHHHh
Confidence 356789999999999999999973 569999655 5 99999999999876543
No 68
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.22 E-value=1.7e-06 Score=68.02 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHHhCC---cchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGN---KWARIATYLPGRTDNDVKNFWSSRQKRLARI 115 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~---kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~ 115 (302)
-||.|||+.||...++-|. .|+.||+.|.+|+.+||++||+.+++-+.+.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999986 7999999999999999999999999877653
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.21 E-value=3e-07 Score=83.27 Aligned_cols=49 Identities=24% Similarity=0.442 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccccccC
Q 038795 8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLR 58 (302)
Q Consensus 8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~ 58 (302)
...++||.||++++++++.+|| ++|..|| +.+++||..||+.+|+++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IA-k~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAIS-DVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHH-HHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHH-HHcCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999 8999995 56999999999999987764
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.17 E-value=4.2e-07 Score=68.98 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCcccccccccCCCCccccccccccccCC
Q 038795 9 RKGPWKAEEDEVLINHVKKYGP---RDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59 (302)
Q Consensus 9 rKG~WT~EED~~L~~~V~~~G~---~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p 59 (302)
..+.||.+|+++|.+++..|+. .+|..||+ +|++|+..+|+.||..++.-
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHHHhc
Confidence 3467999999999999999974 46999954 59999999999999887643
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.14 E-value=4.3e-06 Score=78.89 Aligned_cols=102 Identities=18% Similarity=0.327 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccc-------ccccc----------------------------
Q 038795 12 PWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRL-------RWVNK---------------------------- 56 (302)
Q Consensus 12 ~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~-------Rw~~~---------------------------- 56 (302)
.||..+...++.++.+||..+|..||+. |.|++...++. ||...
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~e-v~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKD-VEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTS-STTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999998899999655 88998887753 22100
Q ss_pred ------------c--CCCCCCCCCCCHHHHHHHHHHHHHhC----Ccchhhh---c---------cCCCCCHHHHHHHHH
Q 038795 57 ------------L--RPNLKNGCKFSLEEERIVIELQAQFG----NKWARIA---T---------YLPGRTDNDVKNFWS 106 (302)
Q Consensus 57 ------------L--~p~lk~~~~WT~EED~lLlelv~~~G----~kWs~IA---k---------~LpgRT~nq~KnRw~ 106 (302)
| .-..+++..||++||..|+-++.+|| +.|..|. + ++..||+.+|..|.+
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~ 270 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN 270 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence 0 00122455899999999999999999 4699995 2 557899999999999
Q ss_pred HHHHHHHH
Q 038795 107 SRQKRLAR 114 (302)
Q Consensus 107 ~l~kr~~r 114 (302)
++++-+.+
T Consensus 271 tLi~~iek 278 (304)
T 1ofc_X 271 TLITLIER 278 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 72
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.13 E-value=1.9e-06 Score=62.67 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHh--------CCc-chhhhc-cCCCCCHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQF--------GNK-WARIAT-YLPGRTDNDVKNFWSSRQ 109 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~--------G~k-Ws~IAk-~LpgRT~nq~KnRw~~l~ 109 (302)
+||+|||.+|++.|.+| |++ |..+|+ .++++|-.++|+||...+
T Consensus 4 ~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 4 AFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 79999999999999999 544 999999 799999999999997654
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.33 E-value=5.3e-07 Score=67.35 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHhCC---cchhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGN---KWARIATYLPGRTDNDVKNFWSSRQKRLAR 114 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~---kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r 114 (302)
.||.|||+.|+...++-|. .|+.||+.| +||.+||++||..+++-+.+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLFEK 66 (70)
Confidence 6999999999999999996 799999999 99999999999998875543
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=7.1e-06 Score=60.16 Aligned_cols=48 Identities=17% Similarity=0.330 Sum_probs=43.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhc-cCCCCCHHHHHHHHHH
Q 038795 59 PNLKNGCKFSLEEERIVIELQAQFGNKWARIAT-YLPGRTDNDVKNFWSS 107 (302)
Q Consensus 59 p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk-~LpgRT~nq~KnRw~~ 107 (302)
|.++.. .||++|-.+..+.+.+||.+|..|++ .|++||..+|...|..
T Consensus 5 p~~~~~-~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEK-CWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCC-SCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCC-CcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 556565 89999999999999999999999998 5899999999998854
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.94 E-value=2.1e-05 Score=62.18 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=52.3
Q ss_pred cccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCcchhhhccCC-----CCCHHHHHHHHHHHHHHHHHHhc
Q 038795 51 LRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNKWARIATYLP-----GRTDNDVKNFWSSRQKRLARILQ 117 (302)
Q Consensus 51 ~Rw~~~L~p~lk~~~~WT~EED~lLlelv~~~G~kWs~IAk~Lp-----gRT~nq~KnRw~~l~kr~~r~~~ 117 (302)
+.|..+|.. . .||.||-..|++|+.+|+-+|..|+..+. +||-.++|+||..+.+++.+...
T Consensus 22 eEY~~~L~~----~-~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLHD----D-AWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTCB----T-TBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCC----C-CCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 345566652 3 79999999999999999999999997763 79999999999999998877653
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.86 E-value=3.4e-06 Score=63.94 Aligned_cols=42 Identities=21% Similarity=0.444 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC----cchhhhccCCCCCHHHHHHHHH
Q 038795 65 CKFSLEEERIVIELQAQFGN----KWARIATYLPGRTDNDVKNFWS 106 (302)
Q Consensus 65 ~~WT~EED~lLlelv~~~G~----kWs~IAk~LpgRT~nq~KnRw~ 106 (302)
..||.+|+++|..+..+|+. +|.+||..+||||..+|+.+|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 37999999999999999984 7999999999999999999884
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.76 E-value=5.6e-06 Score=62.76 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCcccccccccCCCCccccccccc
Q 038795 10 KGPWKAEEDEVLINHVKKYGP---RDWSSIRSKGLLQRTGKSCRLRWV 54 (302)
Q Consensus 10 KG~WT~EED~~L~~~V~~~G~---~nW~~Ias~~l~~Rt~~qCR~Rw~ 54 (302)
.+.||.||+++|.+++..|+. ..|.+||+ .|+||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence 457999999999999999974 37999965 599999999999985
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.69 E-value=3.4e-05 Score=60.91 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHH
Q 038795 65 CKFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSR 108 (302)
Q Consensus 65 ~~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l 108 (302)
..||++|.++..+...+||++|..||..|++||..+|-.+|...
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 37999999999999999999999999999999999999988654
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.64 E-value=7.1e-05 Score=55.95 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCcchhhhc-cCCCCCHHHHHHHHHH
Q 038795 65 CKFSLEEERIVIELQAQFGNKWARIAT-YLPGRTDNDVKNFWSS 107 (302)
Q Consensus 65 ~~WT~EED~lLlelv~~~G~kWs~IAk-~LpgRT~nq~KnRw~~ 107 (302)
..||++|-.+..+.+.+||.+|..|++ .|++||..+|..+|..
T Consensus 9 ~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 379999999999999999999999999 5999999999999864
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.62 E-value=2.8e-05 Score=56.94 Aligned_cols=50 Identities=14% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccc
Q 038795 5 REEIRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 55 (302)
Q Consensus 5 K~~lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~ 55 (302)
++.+....||+||-++..+++.+|| ++|..|+...+++|+..+|..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 4667788999999999999999999 7999995435899999999987753
No 81
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.36 E-value=0.00028 Score=62.05 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=71.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC--CCCcccccccc-cCCCCccccccc-------ccc------------------------
Q 038795 10 KGPWKAEEDEVLINHVKKYG--PRDWSSIRSKG-LLQRTGKSCRLR-------WVN------------------------ 55 (302)
Q Consensus 10 KG~WT~EED~~L~~~V~~~G--~~nW~~Ias~~-l~~Rt~~qCR~R-------w~~------------------------ 55 (302)
...||..|-..|+.++.+|| ...|..|+..+ +.+|+...++.- +..
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTF 86 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchhh
Confidence 34599999999999999999 56899996422 456655543320 000
Q ss_pred --------------------ccC---------------C----CCCCCCCCCHHHHHHHHHHHHHhC-Ccchhhhc--cC
Q 038795 56 --------------------KLR---------------P----NLKNGCKFSLEEERIVIELQAQFG-NKWARIAT--YL 93 (302)
Q Consensus 56 --------------------~L~---------------p----~lk~~~~WT~EED~lLlelv~~~G-~kWs~IAk--~L 93 (302)
.|+ + ....++.||.+||..|+-.+.+|| ++|..|-. .|
T Consensus 87 ~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l 166 (211)
T 4b4c_A 87 RISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDL 166 (211)
T ss_dssp EETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSS
T ss_pred hhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhc
Confidence 000 0 011124699999999999999999 99999942 11
Q ss_pred ------------CCCCHHHHHHHHHHHHHHHHH
Q 038795 94 ------------PGRTDNDVKNFWSSRQKRLAR 114 (302)
Q Consensus 94 ------------pgRT~nq~KnRw~~l~kr~~r 114 (302)
..+++..+..|...+++-+.+
T Consensus 167 ~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l~~ 199 (211)
T 4b4c_A 167 SLTHKILPDDPDKKPQAKQLQTRADYLIKLLSR 199 (211)
T ss_dssp SCTTTSSCSSTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccCCChHHHHHHHHHHHHHHHH
Confidence 235677899999888876544
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.28 E-value=0.00019 Score=54.98 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------cchhhhccC----CCCCHHHHHHHHHHHHHHHHH
Q 038795 64 GCKFSLEEERIVIELQAQFGN----------KWARIATYL----PGRTDNDVKNFWSSRQKRLAR 114 (302)
Q Consensus 64 ~~~WT~EED~lLlelv~~~G~----------kWs~IAk~L----pgRT~nq~KnRw~~l~kr~~r 114 (302)
+..||.+|-.+||+++..+.. .|..||..| -.||+.||+++|+++.+...+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 347999999999999876321 499999875 379999999999999887644
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.24 E-value=7.6e-05 Score=74.28 Aligned_cols=47 Identities=23% Similarity=0.442 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccccc
Q 038795 9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL 57 (302)
Q Consensus 9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~~L 57 (302)
...+||.||-+++++++.+|| ++|..|+ .++.+|+..||+..|.++-
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA-~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAIS-DVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHH-HHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHH-HHhCCCCHHHHHHHHHHHH
Confidence 467899999999999999999 7999995 5699999999999987543
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.24 E-value=6.9e-05 Score=59.27 Aligned_cols=50 Identities=12% Similarity=0.291 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----CCCCccccccccccccC
Q 038795 8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGL----LQRTGKSCRLRWVNKLR 58 (302)
Q Consensus 8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l----~~Rt~~qCR~Rw~~~L~ 58 (302)
|..++||.||+..|++++++|| .+|..|+...- ++||..++++||....+
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 4558999999999999999999 77999976631 58999999999987554
No 85
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.97 E-value=0.0016 Score=62.92 Aligned_cols=104 Identities=21% Similarity=0.325 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccC-CCCcccccc-------cccc------c--------------------
Q 038795 11 GPWKAEEDEVLINHVKKYGPRDWSSIRSKGLL-QRTGKSCRL-------RWVN------K-------------------- 56 (302)
Q Consensus 11 G~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~-~Rt~~qCR~-------Rw~~------~-------------------- 56 (302)
+-||.-+=..++.++.+||..+-..||.. |. +++...++. ||.. +
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~e-v~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARE-LAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSS-CCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHH-HccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999998889999665 65 788777662 2211 0
Q ss_pred --------------cC----CCCCCCCCCCHHHHHHHHHHHHHhC----Ccchhhhc------------cCCCCCHHHHH
Q 038795 57 --------------LR----PNLKNGCKFSLEEERIVIELQAQFG----NKWARIAT------------YLPGRTDNDVK 102 (302)
Q Consensus 57 --------------L~----p~lk~~~~WT~EED~lLlelv~~~G----~kWs~IAk------------~LpgRT~nq~K 102 (302)
|. ++-.++..||++||..||-++.+|| +.|..|-. +|..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 00 1111445799999999999999999 56999932 25779999999
Q ss_pred HHHHHHHHHHHHH
Q 038795 103 NFWSSRQKRLARI 115 (302)
Q Consensus 103 nRw~~l~kr~~r~ 115 (302)
.|.+.|++-+.+-
T Consensus 283 rRc~tLi~~IeKE 295 (374)
T 2y9y_A 283 RRGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887664
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.94 E-value=0.00055 Score=51.05 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCcccccccccc
Q 038795 9 RKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 55 (302)
Q Consensus 9 rKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~~ 55 (302)
....||+||-++..+++.+|| ++|..|+...+++|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 345799999999999999999 7999995425999999999987753
No 87
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.79 E-value=0.00046 Score=54.36 Aligned_cols=43 Identities=19% Similarity=0.327 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCCccccccccc
Q 038795 10 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWV 54 (302)
Q Consensus 10 KG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l~~Rt~~qCR~Rw~ 54 (302)
...||+||-++..+++..|| ++|..|+ ..+++|+..+|-..|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia-~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIA-SFLERKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHH-HTCTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHH-HHcCCCCHHHHHHHHh
Confidence 35699999999999999999 8899995 5699999999998764
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.71 E-value=0.00027 Score=52.76 Aligned_cols=46 Identities=20% Similarity=0.483 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCcccccccccCCCCccccccccccccC
Q 038795 11 GPWKAEEDEVLINHVKKYGP--RDWSSIRSKGLLQRTGKSCRLRWVNKLR 58 (302)
Q Consensus 11 G~WT~EED~~L~~~V~~~G~--~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~ 58 (302)
-.||.|||..|+..+++.|. ..|..||.+ + +|++.|+.+||+..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~-L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAK-L-DKNPNQVSERFQQLMK 62 (70)
Confidence 45999999999999999985 369999654 5 9999999999988764
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.17 E-value=0.00043 Score=53.01 Aligned_cols=49 Identities=29% Similarity=0.510 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC------CC---Cccccccc---ccCCCCcccccccccccc
Q 038795 9 RKGPWKAEEDEVLINHVKKYG------PR---DWSSIRSK---GLLQRTGKSCRLRWVNKL 57 (302)
Q Consensus 9 rKG~WT~EED~~L~~~V~~~G------~~---nW~~Ias~---~l~~Rt~~qCR~Rw~~~L 57 (302)
|...||.+|-..|+++..... .. -|..||.. .+-.|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 567899999999999997631 11 49999644 234799999999998765
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.92 E-value=0.0024 Score=50.17 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCcccccccccCCCCcccccccccccc
Q 038795 9 RKGPWKAEEDEVLINHVKKYGP--RDWSSIRSKGLLQRTGKSCRLRWVNKL 57 (302)
Q Consensus 9 rKG~WT~EED~~L~~~V~~~G~--~nW~~Ias~~l~~Rt~~qCR~Rw~~~L 57 (302)
.=-.||.|||..|+...++.|. ..|..||.+ +.+|+..|+++|++..+
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~-L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQ-LGNKTPVEVSHRFRELM 81 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH-HSSCCHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHH-HccCCHHHHHHHHHHHH
Confidence 3346999999999999999985 479999654 77899999999997654
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.78 E-value=0.059 Score=39.62 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHhCCc---chhhhccC--CCCCHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGNK---WARIATYL--PGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~k---Ws~IAk~L--pgRT~nq~KnRw~~l~kr~ 112 (302)
.||.|..+..++++.++|.. ++.|.+.| +|.|..+|+.|...+..++
T Consensus 9 ~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 9 LWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp SSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999999965 78888775 7999999999987665444
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.14 E-value=0.017 Score=45.46 Aligned_cols=50 Identities=12% Similarity=0.291 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----CCCCccccccccccccC
Q 038795 8 IRKGPWKAEEDEVLINHVKKYGPRDWSSIRSKGL----LQRTGKSCRLRWVNKLR 58 (302)
Q Consensus 8 lrKG~WT~EED~~L~~~V~~~G~~nW~~Ias~~l----~~Rt~~qCR~Rw~~~L~ 58 (302)
++...||.||...|++++++|+ -.|.-|+.+.. ..|+..+.++||....+
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 4557899999999999999999 67999976632 47899999999876543
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.20 E-value=0.21 Score=46.93 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHhCC-cchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGN-KWARIATYLPGRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~-kWs~IAk~LpgRT~nq~KnRw~~l~kr 111 (302)
.||..+...++.+..+||. +|..||..++|+|..+|+.++.....+
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 6999999999999999995 799999999999999999887654443
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.10 E-value=0.2 Score=43.66 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHhC---Ccchhhhc--cCCCCCHHHHHHHHHHHHHHHHHHh
Q 038795 66 KFSLEEERIVIELQAQFG---NKWARIAT--YLPGRTDNDVKNFWSSRQKRLARIL 116 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G---~kWs~IAk--~LpgRT~nq~KnRw~~l~kr~~r~~ 116 (302)
.||..|-..|+.++.+|| .+|..|+. .|.++|..+|+.++..++.+..+..
T Consensus 9 ~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~ 64 (211)
T 4b4c_A 9 GFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKAL 64 (211)
T ss_dssp CSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999 57999985 4889999999999888877765543
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.19 E-value=0.1 Score=48.32 Aligned_cols=27 Identities=48% Similarity=0.845 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccc
Q 038795 11 GPWKAEEDEVLINHVKKYGPRDWSSIR 37 (302)
Q Consensus 11 G~WT~EED~~L~~~V~~~G~~nW~~Ia 37 (302)
..|+.+||..|+..|.+||.++|..|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 459999999999999999999999994
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=78.07 E-value=5.4 Score=36.72 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHhC---Ccchhhhc--cCCCCCHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFG---NKWARIAT--YLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G---~kWs~IAk--~LpgRT~nq~KnRw~~l~kr~ 112 (302)
.||+.|-+.|++.+.+|| .+|..|+. .|+.++...++.-++.++...
T Consensus 5 ~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 5 SIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp CCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 799999999999999999 58999974 589999999999998776543
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=76.75 E-value=1.5 Score=32.08 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC---ccccccc-ccCCCCccccccccccc
Q 038795 8 IRKGPWKAEEDEVLINHVKKYGPRD---WSSIRSK-GLLQRTGKSCRLRWVNK 56 (302)
Q Consensus 8 lrKG~WT~EED~~L~~~V~~~G~~n---W~~Ias~-~l~~Rt~~qCR~Rw~~~ 56 (302)
..+-.||+|.-++.+++|.+.| .+ ++.|... .++|.|..+++.|.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3466799999999999999999 44 5666321 24577888887765443
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=70.39 E-value=5.9 Score=27.20 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795 67 FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARI 115 (302)
Q Consensus 67 WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~ 115 (302)
+++ .+..++.++-..|-.+..||..+ |-|...|+++.+...+++.+.
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHC-
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 554 44555666657788999999999 889999999888777766543
No 99
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=68.02 E-value=7.3 Score=28.86 Aligned_cols=46 Identities=33% Similarity=0.259 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHHHh
Q 038795 70 EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARIL 116 (302)
Q Consensus 70 EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~~ 116 (302)
+.++.++.++-..|-.-..||..| |-+...|+.+....++++++..
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHHH
Confidence 344555666556788899999999 9999999999988887776654
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=65.56 E-value=8.4 Score=27.22 Aligned_cols=45 Identities=16% Similarity=0.350 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHH----hCCcchhhhccCCCCCHHHHHHHHHHHHHHHH
Q 038795 67 FSLEEERIVIELQAQ----FGNKWARIATYLPGRTDNDVKNFWSSRQKRLA 113 (302)
Q Consensus 67 WT~EED~lLlelv~~----~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~ 113 (302)
.++.| ..++.+.-. .|-.|..||..+ |-|...|+.+....++++.
T Consensus 11 L~~~e-r~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSERE-AMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHH-HHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 44444 445555443 567899999999 9999999998888777775
No 101
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.84 E-value=27 Score=27.89 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=30.6
Q ss_pred HHHHHHHHhCC--------cchhhhccCCCCC----HHHHHHHHHHHHHHHHHHh
Q 038795 74 IVIELQAQFGN--------KWARIATYLPGRT----DNDVKNFWSSRQKRLARIL 116 (302)
Q Consensus 74 lLlelv~~~G~--------kWs~IAk~LpgRT----~nq~KnRw~~l~kr~~r~~ 116 (302)
.|..+|.+.|| +|..||+.|.--+ +..+|..|..++-......
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFL 100 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHH
Confidence 36667777774 6999999883322 4688999998887665544
No 102
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=63.58 E-value=8.7 Score=31.11 Aligned_cols=35 Identities=14% Similarity=-0.051 Sum_probs=29.0
Q ss_pred HHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795 80 AQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARI 115 (302)
Q Consensus 80 ~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~ 115 (302)
-..|-....||..| |-|...|+++....++++++.
T Consensus 148 ~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 148 FFGDLTHRELAAET-GLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp HHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 34577899999999 899999999998888777654
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=63.48 E-value=4.5 Score=32.21 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=30.0
Q ss_pred HHHHHHHhCC--------cchhhhccCCCCCHHHHHHHHHHHHHHHH
Q 038795 75 VIELQAQFGN--------KWARIATYLPGRTDNDVKNFWSSRQKRLA 113 (302)
Q Consensus 75 Llelv~~~G~--------kWs~IAk~LpgRT~nq~KnRw~~l~kr~~ 113 (302)
|..+|...|| .|..||..|.--.+..+|..|..++-...
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 7777778774 69999998744448899999988875543
No 104
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=60.49 E-value=11 Score=29.33 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=29.8
Q ss_pred HHHHHHHHhCC--------cchhhhccCCCCC----HHHHHHHHHHHHHHHHHH
Q 038795 74 IVIELQAQFGN--------KWARIATYLPGRT----DNDVKNFWSSRQKRLARI 115 (302)
Q Consensus 74 lLlelv~~~G~--------kWs~IAk~LpgRT----~nq~KnRw~~l~kr~~r~ 115 (302)
.|..+|.+.|| .|..||..|.--. +..+|..|..++-.....
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~ 101 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVY 101 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 36666777774 7999999983322 568899998887665443
No 105
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=60.35 E-value=16 Score=29.25 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=30.3
Q ss_pred HHHHHHHHhCC--------cchhhhccCCCCC----HHHHHHHHHHHHHHHHHH
Q 038795 74 IVIELQAQFGN--------KWARIATYLPGRT----DNDVKNFWSSRQKRLARI 115 (302)
Q Consensus 74 lLlelv~~~G~--------kWs~IAk~LpgRT----~nq~KnRw~~l~kr~~r~ 115 (302)
.|..+|.+.|| .|..||..|.--+ +..+|+.|..++-...+.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 36677777774 7999999883322 468899998887765554
No 106
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=60.35 E-value=13 Score=30.22 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=30.0
Q ss_pred HhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHHHhc
Q 038795 81 QFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ 117 (302)
Q Consensus 81 ~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~~~ 117 (302)
..|-....||..| |-|...|+++....++++++..+
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~Lr~~l~ 189 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREAIDNKVQ 189 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999 89999999999888888776553
No 107
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=57.52 E-value=8.9 Score=30.53 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC--------cchhhhccCCCCC----HHHHHHHHHHHHHHHH
Q 038795 74 IVIELQAQFGN--------KWARIATYLPGRT----DNDVKNFWSSRQKRLA 113 (302)
Q Consensus 74 lLlelv~~~G~--------kWs~IAk~LpgRT----~nq~KnRw~~l~kr~~ 113 (302)
.|..+|.+.|| .|..||..|.--. +..+|..|..++-...
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 36777778874 6999999883322 5688999988776543
No 108
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=54.49 E-value=6.9 Score=31.67 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=31.3
Q ss_pred HHHHHHHhCC--------cchhhhccCCCCCHHHHHHHHHHHHHHHHHHh
Q 038795 75 VIELQAQFGN--------KWARIATYLPGRTDNDVKNFWSSRQKRLARIL 116 (302)
Q Consensus 75 Llelv~~~G~--------kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~~ 116 (302)
|..+|.+.|+ .|..||..|.--.+..+|+.|..++-....-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~~~ 102 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYERHM 102 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHHHH
Confidence 5566666664 69999998744449999999999887766543
No 109
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=52.59 E-value=8.5 Score=26.78 Aligned_cols=42 Identities=10% Similarity=0.183 Sum_probs=30.6
Q ss_pred HHHHHHHHHH----HhCCcchhhhccCCCCCHHHHHHHHHHHHHHHH
Q 038795 71 EERIVIELQA----QFGNKWARIATYLPGRTDNDVKNFWSSRQKRLA 113 (302)
Q Consensus 71 ED~lLlelv~----~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~ 113 (302)
.+..++.+.- ..|-.+..||..+ |-|...|+.+....++++.
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3444445543 2467899999999 9999999998877766553
No 110
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=49.99 E-value=22 Score=29.66 Aligned_cols=43 Identities=21% Similarity=0.202 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHHHh
Q 038795 73 RIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARIL 116 (302)
Q Consensus 73 ~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~~ 116 (302)
..++.++-..|-....||+.| |-|...|+.+.+..++++++..
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHH
Confidence 334444444577899999999 9999999999988887776654
No 111
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=49.10 E-value=19 Score=28.09 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=29.5
Q ss_pred HhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHHHhc
Q 038795 81 QFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARILQ 117 (302)
Q Consensus 81 ~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~~~ 117 (302)
..|-....||+.| |-|...|+++....++++++...
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999 89999999999888877766543
No 112
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=48.66 E-value=12 Score=32.24 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=20.8
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCCCCcccc
Q 038795 6 EEIRKGPWKAEEDEVLI--------NHVKKYGPRDWSSI 36 (302)
Q Consensus 6 ~~lrKG~WT~EED~~L~--------~~V~~~G~~nW~~I 36 (302)
+.-.+|-||.|.|+.|. +++++|| |..|
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~eri 145 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRM 145 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHH
Confidence 34678999999999875 4566666 5555
No 113
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=46.00 E-value=27 Score=33.52 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHhCC-cchhhhccCC-CCCHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGN-KWARIATYLP-GRTDNDVKNFWS 106 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~-kWs~IAk~Lp-gRT~nq~KnRw~ 106 (302)
.||.-+=..++.+..+||. +-..||..+. |+|..+|+.+.+
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~ 167 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAK 167 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHH
Confidence 5888888999999999995 5899999997 999999996654
No 114
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.73 E-value=29 Score=25.89 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
..|+.|-++|. ++ ..|-.-..||..| |-|...|+++.+..++++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46776666554 45 7788899999999 889999999887776655
No 115
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=44.86 E-value=38 Score=26.26 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795 67 FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARI 115 (302)
Q Consensus 67 WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~ 115 (302)
.++. +..++.++-..|-....||..+ |-|...|+.+.+...+++...
T Consensus 26 L~~~-~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 26 LTNK-QRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp SCHH-HHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 4443 4455556556788899999999 899999999988776665443
No 116
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.38 E-value=31 Score=24.11 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 67 FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 67 WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
+|+.|-++| .++ ..|-.-..||..+ |-+...|+.+....++++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 555554444 555 6678899999999 889999999887766654
No 117
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=43.08 E-value=21 Score=29.47 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=29.9
Q ss_pred HHHHHHHHhCC--------cchhhhccC--CCC---CHHHHHHHHHHHHHHHHHH
Q 038795 74 IVIELQAQFGN--------KWARIATYL--PGR---TDNDVKNFWSSRQKRLARI 115 (302)
Q Consensus 74 lLlelv~~~G~--------kWs~IAk~L--pgR---T~nq~KnRw~~l~kr~~r~ 115 (302)
.|..+|.+.|| .|..||..| +.. .+..+|..|..++-.....
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 36677777774 699999988 222 2578999998887655444
No 118
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=42.58 E-value=35 Score=27.35 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=31.1
Q ss_pred HHHHHHHHhCC--------cchhhhccC--CCC---CHHHHHHHHHHHHHHHHHHh
Q 038795 74 IVIELQAQFGN--------KWARIATYL--PGR---TDNDVKNFWSSRQKRLARIL 116 (302)
Q Consensus 74 lLlelv~~~G~--------kWs~IAk~L--pgR---T~nq~KnRw~~l~kr~~r~~ 116 (302)
.|..+|...|| .|..||..| +.. .+..+|..|..++-......
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~ 111 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEK 111 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 46677788884 699999887 222 25789999988877655443
No 119
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=42.10 E-value=42 Score=22.18 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 72 ERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 72 D~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
+..++.+ -..|-.-..||..| |-+...|+++.....+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4455666 36788889999999 889999999887776654
No 120
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=41.89 E-value=22 Score=28.71 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=27.2
Q ss_pred HHHHHHHHhCC--------cchhhhccC--CCC---CHHHHHHHHHHHHHH
Q 038795 74 IVIELQAQFGN--------KWARIATYL--PGR---TDNDVKNFWSSRQKR 111 (302)
Q Consensus 74 lLlelv~~~G~--------kWs~IAk~L--pgR---T~nq~KnRw~~l~kr 111 (302)
.|..+|.+.|| .|..||..| +.- ....+|++|..++-.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 36677778874 799999887 322 246889999876654
No 121
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=41.06 E-value=30 Score=26.91 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHH
Q 038795 67 FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKN 103 (302)
Q Consensus 67 WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~Kn 103 (302)
=+..-+..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 13 GTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp CSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 467778888899999999999999999 777776654
No 122
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=40.99 E-value=15 Score=27.91 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=26.0
Q ss_pred HHHHHHHhC--------CcchhhhccCCCC----CHHHHHHHHHHHHHHH
Q 038795 75 VIELQAQFG--------NKWARIATYLPGR----TDNDVKNFWSSRQKRL 112 (302)
Q Consensus 75 Llelv~~~G--------~kWs~IAk~LpgR----T~nq~KnRw~~l~kr~ 112 (302)
|..+|.+.| +.|..||..|.-- .+..+|+.|..++-..
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 666677776 3799999887321 2568888887766543
No 123
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.16 E-value=38 Score=25.26 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
..|..|-++|.-++ .|..-..||..| |-+...|+++...+++++
T Consensus 29 ~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 29 VLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 57887777665443 788899999999 899999999888776654
No 124
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=39.93 E-value=30 Score=25.25 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=30.9
Q ss_pred HHHHHHHHHHH----hCCcchhhhccCCCCCHHHHHHHHHHHHHHHH
Q 038795 71 EERIVIELQAQ----FGNKWARIATYLPGRTDNDVKNFWSSRQKRLA 113 (302)
Q Consensus 71 ED~lLlelv~~----~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~ 113 (302)
.+..++.+.-. .|-.+..||..+ |-|...|+++-...++++.
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 34445555433 467899999999 9999999998777666653
No 125
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.17 E-value=37 Score=23.21 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
.+|+.|-++|.- + ..|..-..||..+ |-|...|+.+.+...+++
T Consensus 11 ~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 11 LLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 577777666554 4 6677899999999 889999999887766654
No 126
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.30 E-value=30 Score=25.09 Aligned_cols=44 Identities=25% Similarity=0.201 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
..|+.|-++|. ++ ..|-.-..||+.| |-+...|+++.+...+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46777665554 44 6788899999999 899999999877666554
No 127
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=35.12 E-value=13 Score=28.95 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=26.5
Q ss_pred HHHHHHHHhC--------CcchhhhccCC--CC---CHHHHHHHHHHHHHH
Q 038795 74 IVIELQAQFG--------NKWARIATYLP--GR---TDNDVKNFWSSRQKR 111 (302)
Q Consensus 74 lLlelv~~~G--------~kWs~IAk~Lp--gR---T~nq~KnRw~~l~kr 111 (302)
.|..+|.+.| +.|..||..|. .. .+..+|+.|..++-.
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 3666677777 47999998873 21 246899999887643
No 128
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=34.86 E-value=66 Score=25.02 Aligned_cols=46 Identities=22% Similarity=0.127 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHH
Q 038795 67 FSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLAR 114 (302)
Q Consensus 67 WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r 114 (302)
+++.+ ..++.++-..|-.-..||..+ |-|...|+.+.+...+++..
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHH
Confidence 55554 445556557788999999999 99999999998877666544
No 129
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.11 E-value=36 Score=24.89 Aligned_cols=44 Identities=25% Similarity=0.114 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
..|+.|-++| .++ ..|-.-..||..| |-+...|+++....++++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4666666555 444 6788899999999 889999999877666554
No 130
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.93 E-value=7.6 Score=30.87 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=26.7
Q ss_pred HHHHHHHHhCC-------CCcccccccccCCCCccccccccccccCC
Q 038795 20 VLINHVKKYGP-------RDWSSIRSKGLLQRTGKSCRLRWVNKLRP 59 (302)
Q Consensus 20 ~L~~~V~~~G~-------~nW~~Ias~~l~~Rt~~qCR~Rw~~~L~p 59 (302)
+|..+|.+.|. +.|..|+...... .+..++..|.++|.+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~-~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQIS-DYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSC-CTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence 47777777764 4699997653333 377888888888754
No 131
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=32.43 E-value=24 Score=28.38 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHHHHHh
Q 038795 70 EEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRLARIL 116 (302)
Q Consensus 70 EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~~ 116 (302)
+.+..++.+....|-.-..||..| |-+.+.||++.....+++++..
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHHH
Confidence 344555556555677899999999 8999999999888777776544
No 132
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=32.27 E-value=13 Score=30.01 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHHHHhCC-------CCcccccccccCCCC----ccccccccccccCCCCCCCCCCCHHHHHHHHHHHH
Q 038795 20 VLINHVKKYGP-------RDWSSIRSKGLLQRT----GKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQA 80 (302)
Q Consensus 20 ~L~~~V~~~G~-------~nW~~Ias~~l~~Rt----~~qCR~Rw~~~L~p~lk~~~~WT~EED~lLlelv~ 80 (302)
+|..+|.+.|. +.|..|+.......+ +...|..|.++|.+-= ..+.+|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE----~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD----SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH----HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH----CcCHHHHhhHHHHHH
Confidence 45556666553 359999766433332 3467888999987632 477888888876653
No 133
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=29.24 E-value=79 Score=23.37 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHH
Q 038795 69 LEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNF 104 (302)
Q Consensus 69 ~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnR 104 (302)
.-|...|.+++.++|++.+..|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 4477788889999999999999999 6665555443
No 134
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=28.57 E-value=47 Score=26.29 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCcchhhhccCCCCCHHHHHH
Q 038795 74 IVIELQAQFGNKWARIATYLPGRTDNDVKN 103 (302)
Q Consensus 74 lLlelv~~~G~kWs~IAk~LpgRT~nq~Kn 103 (302)
.|..++...|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999999 767766643
No 135
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.89 E-value=40 Score=26.56 Aligned_cols=31 Identities=19% Similarity=0.480 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCcchhhhccCCCCCHHHHHH
Q 038795 72 ERIVIELQAQFGNKWARIATYLPGRTDNDVKN 103 (302)
Q Consensus 72 D~lLlelv~~~G~kWs~IAk~LpgRT~nq~Kn 103 (302)
+..|..+....|..|..+|..| |=|..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778888999999999999 777776654
No 136
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.77 E-value=1.7e+02 Score=21.65 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHhC--C--cchhhhccCCC---------------CCHHHHHHHHHHHHHHHHHHhcc
Q 038795 66 KFSLEEERIVIELQAQFG--N--KWARIATYLPG---------------RTDNDVKNFWSSRQKRLARILQN 118 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G--~--kWs~IAk~Lpg---------------RT~nq~KnRw~~l~kr~~r~~~~ 118 (302)
.||.+.-..|.....+.. . .=..||..+ + -|..+|++.|.+.-.+.++..+.
T Consensus 13 ~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l-~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 13 TWRKECLAVMESYFNENQYPDEAKREEIANAC-NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 689988888877776522 1 135566666 4 88999999998876665555443
No 137
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=27.10 E-value=64 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhCCcchhhhccCCCCCHHHH
Q 038795 69 LEEERIVIELQAQFGNKWARIATYLPGRTDNDV 101 (302)
Q Consensus 69 ~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~ 101 (302)
.-|...|.++...+|++++..|+.| |=+...+
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL 49 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNL 49 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHH
Confidence 3477788899999999999999988 4444433
No 138
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.01 E-value=45 Score=26.38 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCcchhhhccCCCCCHHHHHH
Q 038795 74 IVIELQAQFGNKWARIATYLPGRTDNDVKN 103 (302)
Q Consensus 74 lLlelv~~~G~kWs~IAk~LpgRT~nq~Kn 103 (302)
.|..++...|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999999 777776644
No 139
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=26.87 E-value=62 Score=25.02 Aligned_cols=30 Identities=20% Similarity=0.577 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCcchhhhccCCCCCHHHHHH
Q 038795 73 RIVIELQAQFGNKWARIATYLPGRTDNDVKN 103 (302)
Q Consensus 73 ~lLlelv~~~G~kWs~IAk~LpgRT~nq~Kn 103 (302)
..|..+....|..|..+|+.| |=+..+|.+
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 445566677899999999999 777776654
No 140
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=26.04 E-value=1.1e+02 Score=23.25 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFWSSRQKRL 112 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~ 112 (302)
..|+.|-++|. ++ ..|-.-..||..| |-+...|+.+...+++++
T Consensus 34 ~Lt~re~~Vl~-l~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 34 RLSPKESEVLR-LF-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SCCHHHHHHHH-HH-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 57888877664 44 4688899999999 889999999887776654
No 141
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.15 E-value=49 Score=26.88 Aligned_cols=40 Identities=10% Similarity=0.097 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCC-cchhhhccCCCCCHHHHHHHHHHHHH
Q 038795 70 EEERIVIELQAQFGN-KWARIATYLPGRTDNDVKNFWSSRQK 110 (302)
Q Consensus 70 EED~lLlelv~~~G~-kWs~IAk~LpgRT~nq~KnRw~~l~k 110 (302)
+-|..|+++.++.|. .|..||+.+ |=|...|+.|++.+..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 457788888777664 699999999 9999999999877654
No 142
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=23.92 E-value=1.2e+02 Score=23.12 Aligned_cols=32 Identities=6% Similarity=0.131 Sum_probs=26.1
Q ss_pred CCcchhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 038795 83 GNKWARIATYLPGRTDNDVKNFWSSRQKRLARI 115 (302)
Q Consensus 83 G~kWs~IAk~LpgRT~nq~KnRw~~l~kr~~r~ 115 (302)
|-.+..||..| |-|...|+++-..-+++++..
T Consensus 39 ~~s~~EIA~~l-giS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 39 DYTLEEVGKQF-DVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHHH
Confidence 46799999999 999999999888777766543
No 143
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=22.79 E-value=65 Score=27.57 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=13.6
Q ss_pred CCCCCCCCCCHHHHHHHH
Q 038795 59 PNLKNGCKFSLEEERIVI 76 (302)
Q Consensus 59 p~lk~~~~WT~EED~lLl 76 (302)
|.-..| .||.++|+.|.
T Consensus 110 P~N~pG-IWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPG-IWTHDDDESLK 126 (168)
T ss_dssp CTTCTT-CCCHHHHHHHH
T ss_pred CCCCCC-CCChhhHHHHH
Confidence 444588 89999999886
No 144
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.26 E-value=1.3e+02 Score=23.56 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhC-CcchhhhccCCCCCHHHHHHHHHHHHHH
Q 038795 70 EEERIVIELQAQFG-NKWARIATYLPGRTDNDVKNFWSSRQKR 111 (302)
Q Consensus 70 EED~lLlelv~~~G-~kWs~IAk~LpgRT~nq~KnRw~~l~kr 111 (302)
+-|..|+.+.+..| -.++.||+.+ |=|...|..|.+.+.+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 34556777776766 4699999999 78999999988777543
No 145
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=20.58 E-value=1.5e+02 Score=17.71 Aligned_cols=38 Identities=8% Similarity=0.139 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHhCCcchhhhccCCCCCHHHHHHHH
Q 038795 66 KFSLEEERIVIELQAQFGNKWARIATYLPGRTDNDVKNFW 105 (302)
Q Consensus 66 ~WT~EED~lLlelv~~~G~kWs~IAk~LpgRT~nq~KnRw 105 (302)
..+.++-..++.++ .-|-....||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 46677766777665 4577789999998 77877776643
Done!