BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038800
         (280 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4J2K1|MNMA_DESRM tRNA-specific 2-thiouridylase MnmA OS=Desulfotomaculum reducens
           (strain MI-1) GN=mnmA PE=3 SV=1
          Length = 367

 Score = 36.6 bits (83), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 10/116 (8%)

Query: 40  TWLWLEEMGFPNIITKLMNLTDPMVNILADEVASCLNSFQTNNTQTVANV-ALPFTS--- 95
           T   L++ G+ +I+   M + DP V ++ D+   C +    ++ + VANV  +P+     
Sbjct: 20  TAALLQQQGY-DIVGVTMQIWDPEVTVVGDDYVGCCSLTAVDDARRVANVLGIPYYVLNF 78

Query: 96  RIMEREISLQIFLQNRFQAISGIKNFLNTVCARI--FTDILQRVLGMSSQVILNNH 149
           R +  E  +Q F+   FQ   G        C R   F  +LQR   M    I   H
Sbjct: 79  RELFTEKVIQYFVDEYFQ---GRTPNPCIACNRFIKFEALLQRARQMGFDYIATGH 131


>sp|P18715|ZG26_XENLA Gastrula zinc finger protein XlCGF26.1 (Fragment) OS=Xenopus laevis
           PE=3 SV=1
          Length = 337

 Score = 33.9 bits (76), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 92  PFTSRIMEREISLQIFLQNRFQAISGIKNFLNTVCARIFT 131
           PFT     +  S +I LQN F+  +G K F  T C + FT
Sbjct: 257 PFTCTYCGKSFSQRISLQNHFKIHTGEKPFSCTECGKCFT 296


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,321,120
Number of Sequences: 539616
Number of extensions: 4035699
Number of successful extensions: 10687
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10684
Number of HSP's gapped (non-prelim): 12
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)