Query 038800
Match_columns 280
No_of_seqs 74 out of 76
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rs2_A Musashi-1, RNA-binding 98.8 2E-08 6.8E-13 78.6 10.0 84 188-279 20-105 (109)
2 2lxi_A RNA-binding protein 10; 98.7 4.6E-08 1.6E-12 74.3 7.6 82 194-280 2-85 (91)
3 1x4h_A RNA-binding protein 28; 98.7 6.8E-08 2.3E-12 74.4 8.4 86 189-279 11-102 (111)
4 1whw_A Hypothetical protein ri 98.7 1.2E-07 4.1E-12 71.8 9.6 84 189-279 4-89 (99)
5 2cqg_A TDP-43, TAR DNA-binding 98.7 1.6E-07 5.6E-12 71.7 10.1 82 189-279 11-94 (103)
6 2dh8_A DAZ-associated protein 98.7 5.1E-08 1.8E-12 74.7 7.2 83 189-279 12-96 (105)
7 2cqd_A RNA-binding region cont 98.7 3.1E-07 1E-11 71.7 11.8 82 189-278 13-96 (116)
8 2dgs_A DAZ-associated protein 98.6 1.5E-07 5.1E-12 71.4 9.5 83 189-279 6-90 (99)
9 3ucg_A Polyadenylate-binding p 98.6 1.3E-07 4.3E-12 70.0 8.7 80 192-279 5-86 (89)
10 2dgo_A Cytotoxic granule-assoc 98.6 1.3E-07 4.3E-12 73.7 8.9 84 189-279 11-96 (115)
11 3bs9_A Nucleolysin TIA-1 isofo 98.6 8.9E-08 3E-12 70.5 7.4 82 190-278 3-86 (87)
12 3s7r_A Heterogeneous nuclear r 98.6 2.3E-07 7.9E-12 68.6 9.7 78 189-274 7-86 (87)
13 2dis_A Unnamed protein product 98.6 1.5E-07 5E-12 72.5 8.2 86 190-279 5-93 (109)
14 1x5u_A Splicing factor 3B subu 98.6 2E-07 6.9E-12 71.2 8.9 85 189-280 11-97 (105)
15 2xs2_A Deleted in azoospermia- 98.6 9E-08 3.1E-12 73.0 6.8 80 190-279 6-87 (102)
16 1wi8_A EIF-4B, eukaryotic tran 98.6 2.2E-07 7.6E-12 71.2 8.9 81 190-279 12-95 (104)
17 1x5t_A Splicing factor 3B subu 98.6 2.3E-07 7.8E-12 69.7 8.8 83 190-279 2-87 (96)
18 1x5s_A Cold-inducible RNA-bind 98.6 2.9E-07 1E-11 70.0 9.2 82 188-279 7-93 (102)
19 1x4b_A Heterogeneous nuclear r 98.6 2.9E-07 9.7E-12 71.9 9.3 82 190-279 24-107 (116)
20 2dnz_A Probable RNA-binding pr 98.6 1.7E-07 5.9E-12 70.2 7.6 80 190-279 2-86 (95)
21 2cqb_A Peptidyl-prolyl CIS-tra 98.5 2E-07 6.8E-12 70.9 7.7 85 189-280 8-94 (102)
22 2dng_A Eukaryotic translation 98.5 2.9E-07 9.9E-12 70.4 8.5 82 189-279 11-94 (103)
23 2cq0_A Eukaryotic translation 98.5 1.7E-07 5.8E-12 71.6 7.1 83 190-279 12-96 (103)
24 1s79_A Lupus LA protein; RRM, 98.5 1.6E-07 5.3E-12 73.5 7.0 75 190-273 8-84 (103)
25 2j76_E EIF-4B, EIF4B, eukaryot 98.5 8.3E-08 2.8E-12 73.5 5.1 84 188-280 14-100 (100)
26 3d2w_A TAR DNA-binding protein 98.5 5.4E-07 1.8E-11 68.2 9.5 76 190-279 8-85 (89)
27 4a8x_A RNA-binding protein wit 98.5 3.8E-07 1.3E-11 67.1 8.3 80 191-280 2-87 (88)
28 2dnm_A SRP46 splicing factor; 98.5 2.8E-07 9.7E-12 70.3 7.6 80 190-279 10-94 (103)
29 2cpf_A RNA binding motif prote 98.5 3.6E-07 1.2E-11 69.0 8.1 83 190-279 2-89 (98)
30 1wf0_A TDP-43, TAR DNA-binding 98.5 3.8E-07 1.3E-11 67.9 8.1 76 190-279 2-79 (88)
31 2cpz_A CUG triplet repeat RNA- 98.5 5.5E-07 1.9E-11 70.1 9.4 84 189-279 21-106 (115)
32 2do4_A Squamous cell carcinoma 98.5 2.9E-07 9.8E-12 69.9 7.5 83 190-280 14-98 (100)
33 2cph_A RNA binding motif prote 98.5 8.1E-07 2.8E-11 67.9 10.0 84 189-279 11-98 (107)
34 1oo0_B CG8781-PA, drosophila Y 98.5 4E-07 1.4E-11 70.3 8.3 84 189-279 22-107 (110)
35 1p27_B RNA-binding protein 8A; 98.5 4.2E-07 1.5E-11 69.5 8.2 81 190-280 20-105 (106)
36 2cpy_A RNA-binding protein 12; 98.5 4.6E-07 1.6E-11 71.1 8.5 83 188-278 10-94 (114)
37 2cjk_A Nuclear polyadenylated 98.5 3.8E-07 1.3E-11 73.7 7.9 79 191-278 1-81 (167)
38 1uaw_A Mouse-musashi-1; RNP-ty 98.5 1.7E-07 5.7E-12 67.5 5.1 73 194-274 1-75 (77)
39 2x1f_A MRNA 3'-END-processing 98.5 9.5E-07 3.2E-11 66.7 9.5 77 193-279 2-83 (96)
40 2cq3_A RNA-binding protein 9; 98.5 1E-06 3.5E-11 67.2 9.7 83 188-279 10-94 (103)
41 3mdf_A Peptidyl-prolyl CIS-tra 98.5 7.7E-07 2.6E-11 65.1 8.6 74 190-273 4-82 (85)
42 4fxv_A ELAV-like protein 1; RN 98.4 1.1E-06 3.8E-11 67.8 9.5 76 192-277 18-98 (99)
43 2kxn_B Transformer-2 protein h 98.4 2E-07 6.7E-12 75.5 5.3 85 189-280 42-128 (129)
44 3md1_A Nuclear and cytoplasmic 98.4 1.4E-06 4.9E-11 63.4 9.3 76 195-280 3-83 (83)
45 2dnl_A Cytoplasmic polyadenyla 98.4 3.9E-07 1.3E-11 71.5 6.6 84 190-279 5-102 (114)
46 2jrs_A RNA-binding protein 39; 98.4 1E-06 3.4E-11 68.9 8.9 81 189-279 22-107 (108)
47 1u6f_A Tcubp1, RNA-binding pro 98.4 7.6E-07 2.6E-11 71.4 8.4 85 188-279 37-123 (139)
48 2cqc_A Arginine/serine-rich sp 98.4 1E-06 3.6E-11 65.7 8.5 80 188-274 10-91 (95)
49 2cq4_A RNA binding motif prote 98.4 3.3E-07 1.1E-11 71.3 5.9 81 190-278 22-104 (114)
50 1x4a_A Splicing factor, argini 98.4 1.2E-06 4E-11 67.6 8.7 81 189-279 18-100 (109)
51 2e5h_A Zinc finger CCHC-type a 98.4 1.5E-06 5.3E-11 64.8 9.0 78 189-273 12-91 (94)
52 2d9p_A Polyadenylate-binding p 98.4 4.7E-07 1.6E-11 69.1 6.1 80 188-279 10-94 (103)
53 2kn4_A Immunoglobulin G-bindin 98.4 1.4E-06 4.8E-11 71.2 9.3 84 189-279 66-151 (158)
54 2fy1_A RNA-binding motif prote 98.4 9.8E-07 3.3E-11 69.7 8.1 82 190-279 4-87 (116)
55 2dgp_A Bruno-like 4, RNA bindi 98.4 1.4E-06 4.7E-11 66.6 8.7 84 189-279 9-97 (106)
56 1l3k_A Heterogeneous nuclear r 98.4 8.7E-07 3E-11 73.3 8.2 82 189-278 9-92 (196)
57 2cqi_A Nucleolysin TIAR; RNA r 98.4 1.9E-06 6.6E-11 65.6 9.4 81 190-279 12-94 (103)
58 2jwn_A Embryonic polyadenylate 98.4 1.1E-06 3.6E-11 69.2 8.1 80 191-278 34-115 (124)
59 2div_A TRNA selenocysteine ass 98.4 1.6E-06 5.3E-11 65.5 8.7 83 189-277 5-93 (99)
60 2khc_A Testis-specific RNP-typ 98.4 9.3E-07 3.2E-11 69.0 7.7 78 189-273 36-115 (118)
61 2lea_A Serine/arginine-rich sp 98.4 6.2E-07 2.1E-11 72.9 6.8 84 189-279 43-128 (135)
62 3s8s_A Histone-lysine N-methyl 98.4 1.3E-06 4.4E-11 68.9 8.3 77 190-276 3-84 (110)
63 2dgw_A Probable RNA-binding pr 98.4 2.1E-06 7.1E-11 64.0 9.0 82 189-280 6-89 (91)
64 1wg5_A Heterogeneous nuclear r 98.4 1.6E-06 5.4E-11 66.9 8.4 82 189-278 11-94 (104)
65 2dhg_A TRNA selenocysteine ass 98.3 7.3E-07 2.5E-11 68.0 6.4 81 190-279 6-91 (104)
66 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.3 2.9E-06 1E-10 67.4 10.2 79 188-273 58-138 (140)
67 3ex7_B RNA-binding protein 8A; 98.3 9E-07 3.1E-11 69.8 7.1 81 189-279 18-103 (126)
68 1x5p_A Negative elongation fac 98.3 2.8E-06 9.5E-11 64.3 9.5 78 189-279 11-88 (97)
69 1iqt_A AUF1, heterogeneous nuc 98.3 9.6E-07 3.3E-11 63.3 6.4 68 202-274 5-74 (75)
70 1p1t_A Cleavage stimulation fa 98.3 4.9E-07 1.7E-11 68.8 5.1 83 190-279 5-89 (104)
71 2ki2_A SS-DNA binding protein 98.3 3.3E-07 1.1E-11 68.2 4.0 77 194-278 2-80 (90)
72 2e5g_A U6 snRNA-specific termi 98.3 2E-06 6.9E-11 64.8 8.4 77 190-279 5-83 (94)
73 2lkz_A RNA-binding protein 5; 98.3 1.1E-06 3.7E-11 68.0 7.0 79 190-273 6-90 (95)
74 2cqh_A IGF-II mRNA-binding pro 98.3 5.3E-07 1.8E-11 67.6 4.9 79 189-279 4-84 (93)
75 2dgv_A HnRNP M, heterogeneous 98.3 1.2E-06 4.2E-11 65.1 6.9 78 190-279 5-87 (92)
76 2do0_A HnRNP M, heterogeneous 98.3 4E-06 1.4E-10 64.8 10.1 79 190-276 12-92 (114)
77 2cpe_A RNA-binding protein EWS 98.3 2.3E-06 8E-11 66.2 8.7 84 190-279 12-104 (113)
78 2ywk_A Putative RNA-binding pr 98.3 2.9E-06 9.8E-11 63.5 8.9 77 189-273 12-90 (95)
79 2dnh_A Bruno-like 5, RNA bindi 98.3 2.8E-06 9.5E-11 64.8 8.9 79 190-279 12-98 (105)
80 1l3k_A Heterogeneous nuclear r 98.3 1.9E-06 6.6E-11 71.2 8.5 82 191-280 102-185 (196)
81 2err_A Ataxin-2-binding protei 98.3 1.7E-06 5.8E-11 67.4 7.4 83 188-279 24-108 (109)
82 1h2v_Z 20 kDa nuclear CAP bind 98.3 3E-06 1E-10 69.5 9.3 83 189-278 35-119 (156)
83 1wel_A RNA-binding protein 12; 98.3 3.7E-07 1.3E-11 72.5 3.5 82 189-278 21-104 (124)
84 2kt5_A RNA and export factor-b 98.3 4.4E-06 1.5E-10 65.9 9.6 83 188-278 30-114 (124)
85 2mss_A Protein (musashi1); RNA 98.3 1.7E-06 5.7E-11 62.2 6.3 68 202-274 5-74 (75)
86 2cjk_A Nuclear polyadenylated 98.3 1.6E-06 5.5E-11 70.0 6.9 80 192-279 86-167 (167)
87 2la6_A RNA-binding protein FUS 98.3 4.5E-06 1.5E-10 63.3 8.9 77 189-274 9-97 (99)
88 3n9u_C Cleavage and polyadenyl 98.3 3.1E-06 1.1E-10 70.8 8.7 82 190-278 52-137 (156)
89 4f25_A Polyadenylate-binding p 98.3 4.2E-06 1.4E-10 65.7 8.9 77 191-279 3-84 (115)
90 2cqp_A RNA-binding protein 12; 98.3 2.1E-06 7.2E-11 64.7 6.9 83 189-278 11-95 (98)
91 3ns6_A Eukaryotic translation 98.2 8.3E-07 2.8E-11 68.2 4.6 78 192-279 5-94 (100)
92 2dnp_A RNA-binding protein 14; 98.2 7.5E-06 2.6E-10 61.0 9.8 76 189-279 5-82 (90)
93 3lqv_A PRE-mRNA branch site pr 98.2 3.4E-06 1.2E-10 65.5 8.1 77 189-278 4-85 (115)
94 2fc9_A NCL protein; structure 98.2 3.3E-06 1.1E-10 64.1 7.7 80 189-279 11-92 (101)
95 2dnq_A RNA-binding protein 4B; 98.2 3.3E-06 1.1E-10 62.9 7.4 77 189-280 4-82 (90)
96 1fj7_A Nucleolin RBD1, protein 98.2 4.4E-07 1.5E-11 69.0 2.5 82 189-279 13-96 (101)
97 3md3_A Nuclear and cytoplasmic 98.2 5.7E-06 1.9E-10 66.1 9.0 74 194-278 1-79 (166)
98 2dgt_A RNA-binding protein 30; 98.2 6.6E-06 2.2E-10 61.5 8.8 76 189-279 6-83 (92)
99 2voo_A Lupus LA protein; RNA-b 98.2 1.9E-06 6.6E-11 74.2 6.5 73 192-273 108-182 (193)
100 1x4e_A RNA binding motif, sing 98.2 3.3E-06 1.1E-10 62.0 6.7 62 190-256 2-65 (85)
101 2db1_A Heterogeneous nuclear r 98.2 2.9E-06 9.8E-11 67.2 6.8 79 190-276 14-96 (118)
102 4f02_A Polyadenylate-binding p 98.2 6.6E-06 2.2E-10 70.6 9.6 81 190-277 12-94 (213)
103 3p5t_L Cleavage and polyadenyl 98.2 9.2E-07 3.2E-11 66.3 3.7 75 195-279 3-84 (90)
104 2e5j_A Methenyltetrahydrofolat 98.2 7.9E-06 2.7E-10 61.8 8.9 77 189-280 15-96 (97)
105 2m2b_A RNA-binding protein 10; 98.2 8.1E-07 2.8E-11 71.3 3.3 84 190-279 20-109 (131)
106 2cpx_A Hypothetical protein FL 98.2 7.9E-06 2.7E-10 63.2 8.7 80 190-279 22-106 (115)
107 2cq1_A PTB-like protein L; RRM 98.2 2.9E-06 1E-10 66.4 6.2 78 191-279 13-92 (101)
108 3ulh_A THO complex subunit 4; 98.2 1.1E-05 3.8E-10 61.6 9.3 77 189-273 25-103 (107)
109 1rk8_A CG8781-PA, CG8781-PA pr 98.2 5.8E-06 2E-10 68.7 8.2 83 190-279 69-153 (165)
110 2dgu_A Heterogeneous nuclear r 98.1 9.9E-06 3.4E-10 61.9 8.8 75 190-279 8-84 (103)
111 1fxl_A Paraneoplastic encephal 98.1 1.1E-05 3.7E-10 64.5 9.4 76 193-278 2-82 (167)
112 2dha_A FLJ20171 protein; RRM d 98.1 2.9E-06 9.9E-11 68.8 5.8 79 190-276 20-103 (123)
113 1sjq_A Polypyrimidine tract-bi 98.1 4.2E-06 1.5E-10 66.7 6.6 79 189-278 12-92 (105)
114 2yh0_A Splicing factor U2AF 65 98.1 8E-06 2.7E-10 67.6 8.6 82 189-280 110-196 (198)
115 2cpj_A Non-POU domain-containi 98.1 1.1E-05 3.9E-10 61.0 8.7 75 189-279 11-90 (99)
116 1wex_A Hypothetical protein (r 98.1 3.2E-06 1.1E-10 66.4 5.6 77 192-279 14-92 (104)
117 2lmi_A GRSF-1, G-rich sequence 98.1 2.2E-06 7.4E-11 66.4 4.6 82 189-278 7-92 (107)
118 2hgl_A HNRPF protein, heteroge 98.1 4.9E-06 1.7E-10 68.6 6.9 80 190-277 41-124 (136)
119 1wez_A HnRNP H', FTP-3, hetero 98.1 4.3E-06 1.5E-10 64.8 6.2 80 189-278 11-92 (102)
120 1x4g_A Nucleolysin TIAR; struc 98.1 1.8E-05 6.1E-10 61.0 9.7 74 190-279 22-100 (109)
121 1x4c_A Splicing factor, argini 98.1 1.9E-05 6.4E-10 61.1 9.6 76 190-279 12-94 (108)
122 3r27_A HnRNP L, heterogeneous 98.1 9.6E-06 3.3E-10 64.1 8.0 77 191-278 19-97 (100)
123 1nu4_A U1A RNA binding domain; 98.1 3.5E-06 1.2E-10 63.2 5.2 77 190-279 5-90 (97)
124 2hgm_A HNRPF protein, heteroge 98.1 5.6E-06 1.9E-10 67.6 6.5 81 188-277 37-120 (126)
125 2dgx_A KIAA0430 protein; RRM d 98.1 1.9E-05 6.6E-10 59.7 9.1 80 190-279 6-91 (96)
126 2jvo_A Nucleolar protein 3; nu 98.1 9.8E-06 3.3E-10 63.3 7.5 73 189-279 27-104 (108)
127 2ek1_A RNA-binding protein 12; 98.1 6.3E-06 2.1E-10 61.6 6.0 78 190-274 12-91 (95)
128 1b7f_A Protein (SXL-lethal pro 98.1 8E-06 2.7E-10 65.7 7.1 77 192-278 2-83 (168)
129 1fjc_A Nucleolin RBD2, protein 98.1 6.4E-06 2.2E-10 61.8 5.9 79 189-279 12-92 (96)
130 2fc8_A NCL protein; structure 98.0 1.7E-05 5.8E-10 60.1 8.2 81 189-279 11-93 (102)
131 1why_A Hypothetical protein ri 98.0 6.7E-06 2.3E-10 62.1 5.8 74 190-279 14-94 (97)
132 2nlw_A Eukaryotic translation 98.0 1.7E-05 5.8E-10 61.1 8.0 78 192-278 14-100 (105)
133 2la4_A Nuclear and cytoplasmic 98.0 1.4E-05 4.9E-10 60.5 7.4 73 189-277 23-100 (101)
134 2cpi_A CCR4-NOT transcription 98.0 7.7E-06 2.6E-10 63.7 6.0 82 191-279 13-102 (111)
135 2cpd_A Apobec-1 stimulating pr 98.0 4.6E-05 1.6E-09 57.6 10.0 76 189-279 11-90 (99)
136 2bz2_A Negative elongation fac 98.0 9.5E-06 3.2E-10 64.9 6.2 76 188-279 34-112 (121)
137 2dnn_A RNA-binding protein 12; 98.0 1.2E-05 4.3E-10 63.6 6.6 78 190-277 13-92 (109)
138 2ytc_A PRE-mRNA-splicing facto 98.0 4.4E-05 1.5E-09 55.7 9.1 70 190-272 9-81 (85)
139 2lcw_A RNA-binding protein FUS 97.2 9.4E-07 3.2E-11 69.0 0.0 84 190-279 4-96 (116)
140 2xnq_A Nuclear polyadenylated 98.0 5.7E-05 2E-09 57.5 9.9 77 188-279 17-96 (97)
141 1wf1_A RNA-binding protein RAL 98.0 3.6E-05 1.2E-09 59.3 8.9 70 190-277 24-99 (110)
142 2ad9_A Polypyrimidine tract-bi 98.0 6.7E-06 2.3E-10 66.8 4.8 79 190-279 28-108 (119)
143 2hgn_A Heterogeneous nuclear r 98.0 4.3E-06 1.5E-10 69.2 3.6 79 189-277 42-122 (139)
144 3md3_A Nuclear and cytoplasmic 97.9 3.2E-05 1.1E-09 61.7 8.5 75 189-273 83-162 (166)
145 2qfj_A FBP-interacting repress 97.9 1.3E-05 4.3E-10 67.3 6.3 81 190-277 25-107 (216)
146 2hzc_A Splicing factor U2AF 65 97.9 3.6E-05 1.2E-09 56.3 7.9 71 190-274 3-86 (87)
147 2g4b_A Splicing factor U2AF 65 97.9 6.3E-05 2.2E-09 60.8 10.0 78 190-274 91-170 (172)
148 2i2y_A Fusion protein consists 97.9 2E-05 6.8E-10 64.1 6.6 76 189-279 69-149 (150)
149 2qfj_A FBP-interacting repress 97.9 2.1E-05 7.3E-10 65.9 6.9 79 191-279 123-206 (216)
150 1x5o_A RNA binding motif, sing 97.9 1.6E-05 5.4E-10 61.6 5.2 61 190-256 22-84 (114)
151 2krb_A Eukaryotic translation 97.9 2.6E-05 9E-10 57.0 6.1 67 193-268 1-75 (81)
152 1fje_B Nucleolin RBD12, protei 97.8 8.3E-06 2.9E-10 66.5 3.6 82 189-279 9-92 (175)
153 3nmr_A Cugbp ELAV-like family 97.8 1.5E-05 5.3E-10 64.3 4.9 59 192-255 2-64 (175)
154 3q2s_C Cleavage and polyadenyl 97.8 3.5E-05 1.2E-09 68.1 7.4 79 192-277 67-149 (229)
155 2hvz_A Splicing factor, argini 97.8 2.2E-05 7.4E-10 59.5 5.2 73 195-279 2-76 (101)
156 1x4d_A Matrin 3; structural ge 97.8 2.1E-05 7.2E-10 61.9 5.2 76 190-276 12-90 (102)
157 2f3j_A RNA and export factor b 97.8 4.9E-05 1.7E-09 64.6 7.7 80 189-276 84-165 (177)
158 2e44_A Insulin-like growth fac 97.8 3.7E-05 1.3E-09 57.5 5.8 75 190-279 12-93 (96)
159 4f02_A Polyadenylate-binding p 97.7 7.1E-05 2.4E-09 64.0 7.7 76 192-279 102-182 (213)
160 2jvr_A Nucleolar protein 3; RN 97.7 0.0001 3.4E-09 58.7 8.0 78 190-277 25-104 (111)
161 3egn_A RNA-binding protein 40; 97.7 5.6E-05 1.9E-09 60.9 6.3 80 190-278 42-130 (143)
162 2yh0_A Splicing factor U2AF 65 97.7 9.8E-05 3.4E-09 61.0 7.7 75 191-278 2-88 (198)
163 2a3j_A U1 small nuclear ribonu 97.7 0.00023 7.8E-09 57.8 9.7 73 192-277 28-109 (127)
164 1fje_B Nucleolin RBD12, protei 97.7 0.00013 4.4E-09 59.4 7.9 79 189-279 95-175 (175)
165 1b7f_A Protein (SXL-lethal pro 97.7 4.5E-05 1.5E-09 61.2 5.1 62 190-256 86-149 (168)
166 3pgw_S U1-70K; protein-RNA com 97.7 0.00022 7.4E-09 68.9 10.7 82 190-278 99-182 (437)
167 2g4b_A Splicing factor U2AF 65 97.7 0.00012 4.2E-09 59.0 7.6 74 191-277 2-87 (172)
168 2ghp_A U4/U6 snRNA-associated 97.7 0.00018 6.3E-09 63.6 9.4 83 189-279 206-292 (292)
169 2dit_A HIV TAT specific factor 97.6 0.00016 5.5E-09 56.3 7.8 61 208-279 40-103 (112)
170 2kvi_A Nuclear polyadenylated 97.6 0.00011 3.8E-09 55.4 6.4 71 190-278 7-83 (96)
171 3pgw_A U1-A; protein-RNA compl 97.6 0.00054 1.9E-08 60.2 11.6 70 190-271 204-276 (282)
172 3smz_A Protein raver-1, ribonu 97.6 9.4E-05 3.2E-09 65.2 6.6 78 191-279 182-265 (284)
173 1whx_A Hypothetical protein ri 97.6 0.00012 4.1E-09 57.2 6.5 67 192-274 9-83 (111)
174 3nmr_A Cugbp ELAV-like family 97.6 0.00014 4.7E-09 58.6 6.8 61 190-256 92-154 (175)
175 3pgw_A U1-A; protein-RNA compl 97.6 0.00022 7.5E-09 62.8 8.5 76 190-275 6-87 (282)
176 1x4f_A Matrin 3; structural ge 97.5 3.2E-05 1.1E-09 62.1 2.3 78 190-278 22-102 (112)
177 3smz_A Protein raver-1, ribonu 97.5 0.00024 8.3E-09 62.6 8.1 78 191-278 93-175 (284)
178 2adc_A Polypyrimidine tract-bi 97.5 0.00016 5.5E-09 62.5 6.4 76 187-277 28-109 (229)
179 1fxl_A Paraneoplastic encephal 97.4 0.00032 1.1E-08 55.8 7.3 70 190-269 85-159 (167)
180 2ghp_A U4/U6 snRNA-associated 97.4 0.00023 8E-09 62.9 6.8 81 191-279 115-198 (292)
181 3sde_A Paraspeckle component 1 97.4 0.00051 1.7E-08 60.6 8.5 74 188-277 17-95 (261)
182 3beg_B Splicing factor, argini 97.4 0.00018 6.3E-09 56.3 4.9 61 192-269 15-80 (115)
183 3sde_A Paraspeckle component 1 97.3 0.00022 7.5E-09 63.0 5.5 81 192-278 95-179 (261)
184 1wg1_A KIAA1579 protein, homol 97.1 0.00052 1.8E-08 50.8 5.0 72 190-275 2-75 (88)
185 2d9o_A DNAJ (HSP40) homolog, s 97.1 0.0034 1.2E-07 49.0 9.7 70 193-273 10-85 (100)
186 1qm9_A Polypyrimidine tract-bi 97.1 0.00052 1.8E-08 57.1 5.0 70 192-276 2-77 (198)
187 2pe8_A Splicing factor 45; RRM 97.0 0.0018 6E-08 50.6 7.1 64 207-277 26-93 (105)
188 2cq2_A Hypothetical protein LO 97.0 0.0024 8.3E-08 51.3 7.9 59 192-259 24-87 (114)
189 3tyt_A Heterogeneous nuclear r 97.0 0.0026 8.9E-08 54.8 8.7 67 192-273 3-75 (205)
190 1jmt_A Splicing factor U2AF 35 96.9 0.0027 9.2E-08 49.4 7.3 61 206-273 27-101 (104)
191 1sjr_A Polypyrimidine tract-bi 96.9 0.0025 8.7E-08 54.5 7.7 63 190-259 41-108 (164)
192 2j8a_A Histone-lysine N-methyl 96.8 0.0014 4.7E-08 54.9 5.5 40 206-247 18-57 (136)
193 2e5i_A Heterogeneous nuclear r 96.8 0.021 7.3E-07 46.2 11.9 61 191-259 21-86 (124)
194 3u1l_A PRE-mRNA-splicing facto 96.7 0.0017 5.9E-08 58.5 5.2 59 190-259 131-203 (240)
195 3zzy_A Polypyrimidine tract-bi 96.5 0.017 5.9E-07 47.4 9.6 63 190-259 23-90 (130)
196 3v4m_A Splicing factor U2AF 65 96.4 0.0089 3E-07 46.5 7.1 64 207-277 28-96 (105)
197 1qm9_A Polypyrimidine tract-bi 96.4 0.0049 1.7E-07 51.1 5.8 72 191-277 118-196 (198)
198 2adc_A Polypyrimidine tract-bi 96.1 0.012 4.1E-07 50.6 6.8 72 191-277 149-227 (229)
199 3tyt_A Heterogeneous nuclear r 95.9 0.013 4.5E-07 50.3 6.5 59 191-255 121-182 (205)
200 3tht_A Alkylated DNA repair pr 95.9 0.026 8.8E-07 53.3 8.9 64 189-260 14-81 (345)
201 3ue2_A Poly(U)-binding-splicin 95.4 0.027 9.3E-07 44.9 6.0 62 208-276 39-107 (118)
202 2wbr_A GW182, gawky, LD47780P; 95.3 0.036 1.2E-06 43.1 6.2 64 195-274 9-77 (89)
203 3s6e_A RNA-binding protein 39; 95.2 0.03 1E-06 44.5 5.7 59 207-276 30-91 (114)
204 2diu_A KIAA0430 protein; struc 94.0 0.24 8.3E-06 39.0 8.1 66 192-277 7-83 (96)
205 3pq1_A Poly(A) RNA polymerase; 92.2 0.13 4.3E-06 50.6 4.9 59 191-258 51-109 (464)
206 3dxb_A Thioredoxin N-terminall 92.2 0.25 8.5E-06 42.0 6.1 63 207-276 142-211 (222)
207 1owx_A Lupus LA protein, SS-B, 90.2 0.17 5.8E-06 41.1 3.0 58 204-269 29-87 (121)
208 2dhx_A Poly (ADP-ribose) polym 83.9 4.8 0.00016 32.1 7.9 73 193-280 8-86 (104)
209 3p3d_A Nucleoporin 53; structu 79.7 2.7 9.3E-05 34.8 5.3 69 203-275 14-96 (132)
210 2hl7_A Cytochrome C-type bioge 77.3 0.96 3.3E-05 34.7 1.7 18 206-223 60-77 (84)
211 2kw0_A CCMH protein; oxidoredu 76.5 1 3.6E-05 35.0 1.7 17 206-222 57-73 (90)
212 2dnr_A Synaptojanin-1; RRM dom 75.7 12 0.0004 28.9 7.6 54 209-277 30-85 (91)
213 2l9w_A U4/U6 snRNA-associated- 65.4 23 0.0008 28.6 7.4 67 190-270 18-92 (117)
214 1ufw_A Synaptojanin 2; RNP dom 63.4 13 0.00045 29.0 5.4 51 209-274 39-91 (95)
215 1wwh_A Nucleoporin 35, nucleop 54.9 43 0.0015 26.9 7.3 46 203-256 31-77 (119)
216 2dzr_A General transcription f 43.6 11 0.00038 29.7 2.0 59 201-267 2-82 (99)
217 1i27_A Transcription factor II 30.2 30 0.001 25.9 2.4 15 203-217 7-21 (73)
218 2dn5_A General transcription f 28.5 67 0.0023 24.8 4.2 62 203-267 4-82 (89)
219 3ctr_A Poly(A)-specific ribonu 24.9 40 0.0014 26.6 2.4 44 203-256 12-57 (101)
220 1nha_A TFIIF-alpha, transcript 24.2 39 0.0013 25.8 2.1 16 202-217 15-30 (82)
221 2jv8_A Uncharacterized protein 22.2 27 0.00091 25.3 0.8 21 260-280 18-48 (73)
No 1
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.83 E-value=2e-08 Score=78.63 Aligned_cols=84 Identities=20% Similarity=0.368 Sum_probs=66.6
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
..+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-.+..+++..+||+|.|.+.+....++.... ..+
T Consensus 20 ~~~~~~~~lfV---~nLp~~~te~~L~~~F~~-~G~-i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~---~~l 91 (109)
T 2rs2_A 20 HMGSSGCKMFI---GGLSWQTTQEGLREYFGQ-FGE-VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HEL 91 (109)
T ss_dssp ------CCEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC---EEE
T ss_pred ccCCCCCEEEE---eCCCCCCCHHHHHHHHHc-cCC-eEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC---CcC
Confidence 45677899998 6877 999999999996 999 5666665545678999999999999999999998643 689
Q ss_pred cCeeeEEEecccCC
Q 038800 266 NGKHIWARKYERRD 279 (280)
Q Consensus 266 ngk~iWarky~pk~ 279 (280)
+|+.+-++...|++
T Consensus 92 ~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 92 DSKTIDPKVAFPRR 105 (109)
T ss_dssp TTEEEEEEECCCCC
T ss_pred CCEEEEEEEccCCC
Confidence 99999999888775
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.68 E-value=4.6e-08 Score=74.30 Aligned_cols=82 Identities=15% Similarity=0.286 Sum_probs=65.7
Q ss_pred ceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCeeeE
Q 038800 194 RTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGKHIW 271 (280)
Q Consensus 194 Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk~iW 271 (280)
+++|| +|.| +||+||+++|.+ ||.-|++|.+-.+..++++.+||+|.|.+.+....++.... -.+.|+|+.+-
T Consensus 2 ~~i~v---~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~-~~~~~~gr~i~ 76 (91)
T 2lxi_A 2 NIVML---RMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQ-HSLNILGQKVS 76 (91)
T ss_dssp CEEEE---ETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTT-TEEEETTEEEE
T ss_pred CEEEE---eCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcC-CCeEECCEEEE
Confidence 56777 9999 999999999996 99547777665435678999999999999999888875321 14579999999
Q ss_pred EEecccCCC
Q 038800 272 ARKYERRDQ 280 (280)
Q Consensus 272 arky~pk~~ 280 (280)
++...||++
T Consensus 77 V~~a~~~~~ 85 (91)
T 2lxi_A 77 MHYSDPKPK 85 (91)
T ss_dssp EECCCSCCC
T ss_pred EEEcCCCCC
Confidence 988888764
No 3
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=6.8e-08 Score=74.45 Aligned_cols=86 Identities=13% Similarity=0.307 Sum_probs=68.5
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCcee----E
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIA----K 262 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~----K 262 (280)
.+.+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||+|.|.+.+....++...+.. .
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 11 DVTEGKTVFI---RNLSFDSEEEALGEVLQQ-FGD-LKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred cCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3556789998 7888 999999999986 999 567777654567889999999999999988887643211 3
Q ss_pred EEEcCeeeEEEecccCC
Q 038800 263 FRINGKHIWARKYERRD 279 (280)
Q Consensus 263 f~Ingk~iWarky~pk~ 279 (280)
..|+|+.+-++...|++
T Consensus 86 ~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp EESSSCEEEEECCCCCC
T ss_pred cEEcCEEEEEEECCCCc
Confidence 57899999998888775
No 4
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=1.2e-07 Score=71.78 Aligned_cols=84 Identities=13% Similarity=0.251 Sum_probs=67.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+..+...++...||.|.|.+.+....++...+. ..|+
T Consensus 4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 76 (99)
T 1whw_A 4 GSSGSGRLFV---RNLSYTSSEEDLEKLFSA-YGP-LSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG--QVFQ 76 (99)
T ss_dssp CCCSCEEEEE---ECCCTTCCHHHHHHHHHT-TSC-EEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT--EESS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 3567899999 7888 999999999996 998 56777766455788999999999999988887742221 3678
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 77 g~~l~V~~a~~~~ 89 (99)
T 1whw_A 77 GRMLHVLPSTIKK 89 (99)
T ss_dssp SCEEEEEECCCCS
T ss_pred CcEEEEEEcCCCc
Confidence 9999998888765
No 5
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=1.6e-07 Score=71.66 Aligned_cols=82 Identities=16% Similarity=0.371 Sum_probs=67.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
..++.+++|| +|.| ++++||+++|.+ ||. |+.|.+-.+..+++...||+|.|.+.+....++.. ...|+
T Consensus 11 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~~ 81 (103)
T 2cqg_A 11 AVQKTSDLIV---LGLPWKTTEQDLKEYFST-FGE-VLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ----RHMID 81 (103)
T ss_dssp CCCCCCCEEE---ESCCSSCCHHHHHHHHGG-GSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS----CEEET
T ss_pred ccCCCCEEEE---EcCCCcCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc----CCeeC
Confidence 3566789988 7877 999999999986 999 55666655356788899999999999999999884 23899
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...||.
T Consensus 82 g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 82 GRWCDCKLPNSKQ 94 (103)
T ss_dssp TEEEEEECCCTTC
T ss_pred CeEEEEEecCCCC
Confidence 9999999888765
No 6
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=5.1e-08 Score=74.74 Aligned_cols=83 Identities=18% Similarity=0.418 Sum_probs=67.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+++|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||+|.|.+.+....++.. + ...|+
T Consensus 12 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~--~~~~~ 83 (105)
T 2dh8_A 12 GADEIGKLFV---GGLDWSTTQETLRSYFSQ-YGE-VVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-R--PHTLD 83 (105)
T ss_dssp CSSSSSEECC---BSCCTTCCHHHHHHHHHT-TSC-EEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-C--SEEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-C--CCeEC
Confidence 3667789988 7888 999999999997 999 45555544356788899999999999998888875 2 35799
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...||+
T Consensus 84 g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 84 GRNIDPKPCTPRG 96 (105)
T ss_dssp TEEEBCCCSCCSS
T ss_pred CEEEEEEEccCCC
Confidence 9999888887765
No 7
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=3.1e-07 Score=71.71 Aligned_cols=82 Identities=13% Similarity=0.244 Sum_probs=68.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
...+.+|+|| ++.| ++++||+++|.+ ||. |+.|.+-.+..+++...||+|.|.+.+....++...+. .|+
T Consensus 13 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~---~~~ 84 (116)
T 2cqd_A 13 KDTTFTKIFV---GGLPYHTTDASLRKYFEG-FGD-IEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP---IID 84 (116)
T ss_dssp CSCSSSEEEE---ECCCSSCCHHHHHHHHHT-TSC-EEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC---EET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-eeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC---cCC
Confidence 3567799998 6887 999999999996 999 66676666456788899999999999999999987653 699
Q ss_pred CeeeEEEecccC
Q 038800 267 GKHIWARKYERR 278 (280)
Q Consensus 267 gk~iWarky~pk 278 (280)
|+.+-++...++
T Consensus 85 g~~l~V~~a~~~ 96 (116)
T 2cqd_A 85 GRKANVNLAYLG 96 (116)
T ss_dssp TEECEEEESTTT
T ss_pred CEEEEEEEcccC
Confidence 999988877554
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1.5e-07 Score=71.42 Aligned_cols=83 Identities=23% Similarity=0.420 Sum_probs=65.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+-.+..+++...||.|.|.+.+....++. .+ ...|+
T Consensus 6 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~--~~~~~ 77 (99)
T 2dgs_A 6 SGSKSNKIFV---GGIPHNCGETELREYFKK-FGV-VTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH--FHDIM 77 (99)
T ss_dssp CCSSCCEEEE---ESCCSSCCHHHHHHHHSS-SSC-EEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC--CCBSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC--CCEEC
Confidence 3567799998 7888 999999999997 998 5556555435678899999999999988877775 21 12579
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 78 g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 78 GKKVEVKRAEPRD 90 (99)
T ss_dssp SCBCEEEECCCCC
T ss_pred CeEEEEEECCCCc
Confidence 9999988888775
No 9
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.64 E-value=1.3e-07 Score=70.01 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=63.8
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCee
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGKH 269 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk~ 269 (280)
+.||+|| +|.| ++++||+++|.+ ||. |+.+.+..+..++++..||.|.|.+.+....++. .+. ..++|+.
T Consensus 5 ~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~g--~~~~g~~ 76 (89)
T 3ucg_A 5 DARSIYV---GNVDYGATAEELEAHFHG-CGS-VNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-LDE--SLFRGRQ 76 (89)
T ss_dssp HHTEEEE---ESCCTTCCHHHHHHHHGG-GCC-EEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG-GTT--CEETTEE
T ss_pred cCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHh-cCC--CEECCcE
Confidence 5689988 7888 999999999996 998 5666665534678899999999999998888873 221 2489999
Q ss_pred eEEEecccCC
Q 038800 270 IWARKYERRD 279 (280)
Q Consensus 270 iWarky~pk~ 279 (280)
+-++...|+.
T Consensus 77 l~V~~a~~~~ 86 (89)
T 3ucg_A 77 IKVIPKRTNR 86 (89)
T ss_dssp CEEEETTTTS
T ss_pred EEEEEccCCC
Confidence 9888877654
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.63 E-value=1.3e-07 Score=73.69 Aligned_cols=84 Identities=10% Similarity=0.261 Sum_probs=66.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+..+...++...||+|.|.+.+....++...+. ..|+
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 83 (115)
T 2dgo_A 11 DTSNHFHVFV---GDLSPEITTEDIKAAFAP-FGR-ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLG 83 (115)
T ss_dssp CSTTCEEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--CEET
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4567899998 7888 999999999995 999 56676665345788899999999999988887752221 2589
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 84 g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 84 GRQIRTNWATRKP 96 (115)
T ss_dssp TEECEEEESSCCC
T ss_pred CEEEEEEEccCCC
Confidence 9999888877664
No 11
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.62 E-value=8.9e-08 Score=70.54 Aligned_cols=82 Identities=9% Similarity=0.208 Sum_probs=61.5
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
..+.+|+|| +|.| ++++||+++|.+ ||. |++|.+-.+..+++...||.|.|.+.+....++..-+. ..++|
T Consensus 3 ~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g 75 (87)
T 3bs9_A 3 LGSHFHVFV---GDLSPEITTAAIAAAFAP-FGR-ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG--QWLGG 75 (87)
T ss_dssp ---CEEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred CCCceEEEE---eCCCCCCCHHHHHHHHHh-cCC-EeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CEECC
Confidence 456789988 7887 999999999996 999 56666655346788899999999998888777652111 25899
Q ss_pred eeeEEEecccC
Q 038800 268 KHIWARKYERR 278 (280)
Q Consensus 268 k~iWarky~pk 278 (280)
+.+-++...||
T Consensus 76 ~~l~v~~a~~k 86 (87)
T 3bs9_A 76 RQIRTNWATRK 86 (87)
T ss_dssp EECEEEEEC--
T ss_pred eEEEEEecCCC
Confidence 99988877766
No 12
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.62 E-value=2.3e-07 Score=68.58 Aligned_cols=78 Identities=23% Similarity=0.533 Sum_probs=62.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+++|| +|.| +++++|+++|.+ ||. |+.|.+-.+..+++...||.|.|.+.+....++.... -.|+
T Consensus 7 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~---~~~~ 78 (87)
T 3s7r_A 7 NEEDAGKMFV---GGLSWDTSKKDLKDYFTK-FGE-VVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE---HRLD 78 (87)
T ss_dssp CCSCTTEEEE---ECCCTTCCHHHHHHHHTT-TSC-EEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC---EEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC---CEEC
Confidence 3567899998 7887 999999999975 998 5566655435678889999999999999999887533 2599
Q ss_pred CeeeEEEe
Q 038800 267 GKHIWARK 274 (280)
Q Consensus 267 gk~iWark 274 (280)
|+.+-+++
T Consensus 79 g~~i~v~~ 86 (87)
T 3s7r_A 79 GRVIDPKK 86 (87)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEe
Confidence 99987764
No 13
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=1.5e-07 Score=72.46 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=68.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEee-ccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQ-ENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~-~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
+.+.+|+|| +|.| ++++||+++|.+ ||..|+.|.+- .+..+++...||+|.|.+.+....++..-+--++.++
T Consensus 5 s~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~ 80 (109)
T 2dis_A 5 SSGNCRLFI---GGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW 80 (109)
T ss_dssp CCCSEEEEE---ECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT
T ss_pred ccCCCEEEE---eCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec
Confidence 557899998 7888 999999999997 99867777775 4456678999999999999998888764321123689
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 81 g~~l~V~~a~~~~ 93 (109)
T 2dis_A 81 GHQIAVDWAEPEI 93 (109)
T ss_dssp TBCCEEEESCSSC
T ss_pred CCeEEEEEcCCCC
Confidence 9999888777664
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=2e-07 Score=71.23 Aligned_cols=85 Identities=20% Similarity=0.322 Sum_probs=67.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+...+++|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||+|.|.+.+....++..-+. ..|+
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 83 (105)
T 1x5u_A 11 ERNQDATVYV---GGLDEKVSEPLLWELFLQ-AGP-VVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDM--IKLY 83 (105)
T ss_dssp CCCTTTEEEE---ECCCTTCCHHHHHHHHHT-TSC-EEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSS--CBCS
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCC--CeEC
Confidence 3567789999 7887 999999999997 998 66677766455788899999999999988887753221 2489
Q ss_pred CeeeEEEecccCCC
Q 038800 267 GKHIWARKYERRDQ 280 (280)
Q Consensus 267 gk~iWarky~pk~~ 280 (280)
|+.+-++...|+++
T Consensus 84 g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 84 GKPIRVNKASAHNK 97 (105)
T ss_dssp SCBCEEEETTTTSC
T ss_pred CeEEEEEECCCCCc
Confidence 99999998887753
No 15
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.59 E-value=9e-08 Score=73.00 Aligned_cols=80 Identities=18% Similarity=0.376 Sum_probs=65.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
..+.+|+|| +|.| ++++||+++|.+ ||+ |+.|.|..+. .++..+||+|.|.+.+....++. -...++|
T Consensus 6 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g 75 (102)
T 2xs2_A 6 KIMPNTVFV---GGIDVRMDETEIRSFFAR-YGS-VKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE----SQINFHG 75 (102)
T ss_dssp EEEEEEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT----CCCEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-eEEEEEEECC-CCCccceEEEEECCHHHHHHHHh----CCCeECC
Confidence 345688888 7877 999999999986 999 5666665534 78899999999999999999998 2347999
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-+.+..||.
T Consensus 76 ~~l~v~~a~~~~ 87 (102)
T 2xs2_A 76 KKLKLGPAIRKQ 87 (102)
T ss_dssp EECEEEEEEECC
T ss_pred EEEEEEECCcCc
Confidence 999888777654
No 16
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=2.2e-07 Score=71.17 Aligned_cols=81 Identities=16% Similarity=0.284 Sum_probs=65.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCC-CCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPS-NEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~-~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+..+|+|| +|.| ++++||+++|.. || |+.|.|-.+..+ ++...||+|.|.+.+....+| ..+ ...|+
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~--g~~~~ 82 (104)
T 1wi8_A 12 KSPPYTAFL---GNLPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN--EESLG 82 (104)
T ss_dssp SSSCEEEEE---ESCCSSCCHHHHHHHTTT-SC--EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG--TCEET
T ss_pred CCCCCEEEE---eCCCCcCCHHHHHHHHHH-CC--ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC--CCEeC
Confidence 455689988 6877 999999999997 99 888888764444 788999999999999988887 322 23589
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+.++...|++
T Consensus 83 g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 83 NKRIRVDVADQAQ 95 (104)
T ss_dssp TEECEEEECCCCC
T ss_pred CcEEEEEEccCCC
Confidence 9999999888775
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=2.3e-07 Score=69.66 Aligned_cols=83 Identities=11% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEE-EeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESI-HMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v-~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
+.+.+|+|| +|.| ++++||+++|.+ ||. |+.+ .+-.+...++...||.|.|.+.+....++...+.. .|+
T Consensus 2 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~ 74 (96)
T 1x5t_A 2 SSGSSGIFI---GNLDPEIDEKLLYDTFSA-FGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ--YLC 74 (96)
T ss_dssp CSCCCEEEE---ECCCTTCCHHHHHHHHHT-TSC-BSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC--EET
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC--EEC
Confidence 456789999 7888 999999999997 998 4444 55443467888999999999999988887643322 479
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 75 g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 75 NRPITVSYAFKKD 87 (96)
T ss_dssp TEECEEEESCCCC
T ss_pred CEEEEEEEecccC
Confidence 9999888877765
No 18
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=2.9e-07 Score=69.97 Aligned_cols=82 Identities=12% Similarity=0.464 Sum_probs=65.0
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAK 262 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~K 262 (280)
..+++.+++|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||.|.|.+.+....++ +|.
T Consensus 7 ~~~~~~~~l~v---~nLp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---- 77 (102)
T 1x5s_A 7 GMASDEGKLFV---GGLSFDTNEQSLEQVFSK-YGQ-ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK---- 77 (102)
T ss_dssp CCCCCCSEEEE---ESCCTTCCHHHHHHHHHH-HSC-CCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC----
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC----
Confidence 34678899999 7877 999999999996 998 666777554567888899999999988877766 554
Q ss_pred EEEcCeeeEEEecccCC
Q 038800 263 FRINGKHIWARKYERRD 279 (280)
Q Consensus 263 f~Ingk~iWarky~pk~ 279 (280)
.|+|+.+-++...|++
T Consensus 78 -~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 78 -SVDGRQIRVDQAGKSS 93 (102)
T ss_dssp -CTTSCCCEEEEEECCC
T ss_pred -EECCeEEEEEECCCCC
Confidence 3789999777766654
No 19
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=2.9e-07 Score=71.89 Aligned_cols=82 Identities=20% Similarity=0.414 Sum_probs=67.5
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+++.+++|| +|.| ++++||+++|.+ ||.+ +.|.+..+..+++...||+|.|.+.+....++.. + ...|+|
T Consensus 24 ~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~--~~~~~g 95 (116)
T 1x4b_A 24 KEQFRKLFI---GGLSFETTEESLRNYYEQ-WGKL-TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-R--PHSIDG 95 (116)
T ss_dssp HHHHTEEEE---ECCTTCCCHHHHHHHHTS-SCCC-SEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-C--SEEETT
T ss_pred cCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCCE-EEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-C--CcEECC
Confidence 456689988 7888 999999999976 9994 5555555356788899999999999999999986 3 357899
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-++...||.
T Consensus 96 ~~l~V~~a~~~~ 107 (116)
T 1x4b_A 96 RVVEPKRAVARE 107 (116)
T ss_dssp EEEEEECCSSCC
T ss_pred EEEEEEECCCCc
Confidence 999999888875
No 20
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.7e-07 Score=70.23 Aligned_cols=80 Identities=13% Similarity=0.333 Sum_probs=64.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf~ 264 (280)
++..+|+|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||.|.|.+.+....++. |. .
T Consensus 2 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-----~ 71 (95)
T 2dnz_A 2 SSGSSGLYV---GSLHFNITEDMLRGIFEP-FGK-IDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF-----E 71 (95)
T ss_dssp CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC-----C
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-EeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC-----e
Confidence 567789999 6877 999999999986 999 5566665545678889999999999888777654 53 4
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-++...||.
T Consensus 72 ~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 72 LAGRPMRVGHVTERL 86 (95)
T ss_dssp SSSSCCEEEESSCCC
T ss_pred eCCcEEEEEEccccc
Confidence 799999998887775
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=2e-07 Score=70.92 Aligned_cols=85 Identities=13% Similarity=0.275 Sum_probs=66.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+-.+..+++...||.|.|.+.+....++...+ ...|+
T Consensus 8 ~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~ 80 (102)
T 2cqb_A 8 MATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD-ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN--ESELF 80 (102)
T ss_dssp SCCCCSCEEE---ESCCSSCCHHHHHHHHTT-TSC-CCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT--TEEET
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHhhc-cCC-EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC--CCEEC
Confidence 4567899999 7877 999999999987 998 5566665435678899999999999888877764211 13689
Q ss_pred CeeeEEEecccCCC
Q 038800 267 GKHIWARKYERRDQ 280 (280)
Q Consensus 267 gk~iWarky~pk~~ 280 (280)
|+.+-++...|+++
T Consensus 81 g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 81 GRTIRVNLAKPMRI 94 (102)
T ss_dssp TEEEEEEECCCCCC
T ss_pred CcEEEEEeCCCCCC
Confidence 99998888877653
No 22
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.54 E-value=2.9e-07 Score=70.41 Aligned_cols=82 Identities=12% Similarity=0.276 Sum_probs=66.2
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.++..+|+|| +|.| ++++||+++|.+ || |+.|.|-.+..+++...||+|.|.+.+....++ ..+ ...|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g--i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~--g~~~~ 81 (103)
T 2dng_A 11 PTEPPYTAYV---GNLPFNTVQGDIDAIFKD-LS--IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD--GALLG 81 (103)
T ss_dssp CSSSCEEEEE---ESCCTTCCHHHHHHHTTT-SC--EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT--TCEET
T ss_pred CCCCCeEEEE---eCCCCCCCHHHHHHHHHh-CC--ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC--CCeEC
Confidence 4566789988 7888 999999999997 77 777777664567888999999999999988888 322 24689
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 82 g~~l~V~~a~~~~ 94 (103)
T 2dng_A 82 DRSLRVDIAEGRK 94 (103)
T ss_dssp TEECEEEECCCCC
T ss_pred CeEEEEEEecCCC
Confidence 9999888777765
No 23
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1.7e-07 Score=71.57 Aligned_cols=83 Identities=13% Similarity=0.274 Sum_probs=66.1
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
.++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||.|.|.+.+....++...+. ..|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g 84 (103)
T 2cq0_A 12 ADDNATIRV---TNLSEDTRETDLQELFRP-FGS-ISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG--FGYDH 84 (103)
T ss_dssp CSSSEEEEE---ESCCTTCCHHHHHTTSTT-TCC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTT--CEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-eEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCC--CeeCC
Confidence 567799998 6888 999999999996 999 66676665456788899999999999988777652221 25899
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-++...|++
T Consensus 85 ~~l~v~~a~~~~ 96 (103)
T 2cq0_A 85 LILNVEWAKPST 96 (103)
T ss_dssp EECEEEESSCCC
T ss_pred cEEEEEECCCCC
Confidence 999988887765
No 24
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1.6e-07 Score=73.51 Aligned_cols=75 Identities=19% Similarity=0.364 Sum_probs=60.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
..+.||+|| +|.| +|++||+++|.+ ||+ |++|.|-.+.. ++..+||+|.|.+.+....++. .+ ...++|
T Consensus 8 ~~~~~~lfV---~~Lp~~~te~~L~~~F~~-~G~-v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~--~~~~~g 78 (103)
T 1s79_A 8 DVKNRSVYI---KGFPTDATLDDIKEWLED-KGQ-VLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TP--GQKYKE 78 (103)
T ss_dssp CSGGGCEEE---ECCCTTCCHHHHHHHHHT-SSC-EEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SS--CCCCTT
T ss_pred cCCCCEEEE---ECCCCCCCHHHHHHHHhh-cCC-EEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cC--CCEECC
Confidence 456799998 8988 999999999996 999 56666666344 8999999999999999998887 22 235899
Q ss_pred eeeEEE
Q 038800 268 KHIWAR 273 (280)
Q Consensus 268 k~iWar 273 (280)
+.+-++
T Consensus 79 r~l~V~ 84 (103)
T 1s79_A 79 TDLLIL 84 (103)
T ss_dssp TTCEEE
T ss_pred EEEEEE
Confidence 988554
No 25
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.53 E-value=8.3e-08 Score=73.54 Aligned_cols=84 Identities=14% Similarity=0.242 Sum_probs=63.7
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccC-CCCCCCceEEEEEcchhhHHHHhCCCceeEEE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENV-PSNEQPLFARLVLQSVANVDQILSGRRIAKFR 264 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~-~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~ 264 (280)
..+...||+|| +|.| ++++||+++|.+ || |+.|.|-.+. .+++..+||+|.|.+.+....++ ..+. ..
T Consensus 14 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G--i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g--~~ 84 (100)
T 2j76_E 14 LPKSPPYTAFL---GNLPYDVTEESIKEFFRG-LN--ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNE--ES 84 (100)
T ss_dssp ------CEEEE---SCCSSCCSSSHHHHHSCS-SC--EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTT--CC
T ss_pred CCCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cC--CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCC--CE
Confidence 34667799998 8988 999999999996 99 8888886644 47889999999999988887777 3221 24
Q ss_pred EcCeeeEEEecccCCC
Q 038800 265 INGKHIWARKYERRDQ 280 (280)
Q Consensus 265 Ingk~iWarky~pk~~ 280 (280)
|+|+.+-++...|+++
T Consensus 85 ~~g~~l~V~~a~~~~~ 100 (100)
T 2j76_E 85 LGNRRIRVDVADQAQD 100 (100)
T ss_dssp BTTBCCCCEECCCSCC
T ss_pred ECCeEEEEEeccCCCC
Confidence 8999998888887764
No 26
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.52 E-value=5.4e-07 Score=68.20 Aligned_cols=76 Identities=18% Similarity=0.376 Sum_probs=59.1
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+....|+|| +|.| +||++++++|.+ ||. |++|.|-. ...+||+|.|.+.+..+. |+|. .+.++|
T Consensus 8 ~~~~~~l~V---~~Lp~~~te~~L~~~F~~-~G~-i~~v~i~~-----~srGfaFV~F~~~~~A~~-~~~~---~~~~~g 73 (89)
T 3d2w_A 8 HHHGSKVFV---GRCTEDMTAEELQQFFCQ-YGE-VVDVFIPK-----PFRAFAFVTFADDKVAQS-LCGE---DLIIKG 73 (89)
T ss_dssp ---CCEEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEECCS-----SCCSEEEEEESCHHHHHH-HTTC---EEEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHhc-cCC-EEEEEEee-----CCCCEEEEEECCHHHHHH-HcCC---CcccCC
Confidence 445568888 8988 999999999996 999 66666643 267899999999998885 6664 788999
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+.++...||+
T Consensus 74 ~~v~v~~a~~k~ 85 (89)
T 3d2w_A 74 ISVHISNAEPKH 85 (89)
T ss_dssp EEEEEEECC---
T ss_pred EEEEEEEcCCCC
Confidence 999999998876
No 27
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.51 E-value=3.8e-07 Score=67.05 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=61.8
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCC-CCceEEEEEcchhhHHHHhC---CCceeEEE
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNE-QPLFARLVLQSVANVDQILS---GRRIAKFR 264 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~-qplfarivf~s~~~v~~vL~---g~~~~Kf~ 264 (280)
...+|+|| +|.| ++++||+++|.+ ||+ |+.+.+..+..++. ...||.|.|.+.+....++. |. .
T Consensus 2 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-----~ 71 (88)
T 4a8x_A 2 MKPTKVHI---GRLTRNVTKDHIMEIFST-YGK-IKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG-----Q 71 (88)
T ss_dssp CCCCEEEE---ECCCTTCCHHHHHHHHHT-TSC-EEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC-----E
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC-----e
Confidence 34578888 7888 999999999986 998 55666654333333 78999999999888777754 42 5
Q ss_pred EcCeeeEEEecccCCC
Q 038800 265 INGKHIWARKYERRDQ 280 (280)
Q Consensus 265 Ingk~iWarky~pk~~ 280 (280)
|+|+.+-+....|+++
T Consensus 72 ~~g~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 72 IDGQEITATAVLAPWP 87 (88)
T ss_dssp ETTEECEEEEECCCCC
T ss_pred ECCeEEEEEECCCCCC
Confidence 8999999988887653
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=2.8e-07 Score=70.31 Aligned_cols=80 Identities=13% Similarity=0.276 Sum_probs=63.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf~ 264 (280)
.++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||+|.|.+.+....++. |. .
T Consensus 10 ~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----~ 79 (103)
T 2dnm_A 10 VDGMITLKV---DNLTYRTSPDSLRRVFEK-YGR-VGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA-----E 79 (103)
T ss_dssp CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC-----C
T ss_pred CCCCeEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC-----E
Confidence 456789998 7888 999999999996 999 6777776645668889999999999888777654 43 3
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-++...+++
T Consensus 80 ~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 80 LDGRELRVQVARYGR 94 (103)
T ss_dssp BTTBCCEEEECSSCC
T ss_pred ECCcEEEEEECCcCC
Confidence 899999887776554
No 29
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.51 E-value=3.6e-07 Score=68.95 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=63.2
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCC---CCCCCceEEEEEcchhhHHHHhCCCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVP---SNEQPLFARLVLQSVANVDQILSGRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~---~~~qplfarivf~s~~~v~~vL~g~~~~Kf~ 264 (280)
+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.+..+.. +++...||.|.|.+.+....++..-+. ..
T Consensus 2 s~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g--~~ 74 (98)
T 2cpf_A 2 SSGSSGLFI---KNLNFSTTEETLKGVFSK-VGA-IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQG--HT 74 (98)
T ss_dssp CCCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTT--CE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCC--Ce
Confidence 456789999 7888 999999999986 999 55565554222 347789999999999988877653111 16
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-++...|++
T Consensus 75 ~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 75 VDGHKLEVRISERAT 89 (98)
T ss_dssp ETTEECEEECSSCSS
T ss_pred eCCeEEEEEEccCCC
Confidence 899999888877765
No 30
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=3.8e-07 Score=67.87 Aligned_cols=76 Identities=24% Similarity=0.423 Sum_probs=62.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+...||+|| +|.| ++++||+++|.+ ||. |+.|.+-. ....||+|.|.+.+..+. ++|. .+.++|
T Consensus 2 ~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~-----~~~g~afV~f~~~~~a~~-~~~~---~~~~~g 67 (88)
T 1wf0_A 2 SSGSSGVFV---GRCTGDMTEDELREFFSQ-YGD-VMDVFIPK-----PFRAFAFVTFADDQIAQS-LCGE---DLIIKG 67 (88)
T ss_dssp CSCCCEEEE---ESCCSSSCHHHHHHHSTT-TSC-CCEEECCS-----SCCSCCEEECSCHHHHHH-TTTC---EEEETT
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCC-eeEEEEec-----CCCCEEEEEECCHHHHHH-HhcC---CceeCC
Confidence 356799999 7888 999999999986 999 67777744 267899999999998876 4554 689999
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-+....||+
T Consensus 68 ~~l~v~~a~~~~ 79 (88)
T 1wf0_A 68 ISVHISNAEPKH 79 (88)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEecCCCC
Confidence 999999888875
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.50 E-value=5.5e-07 Score=70.14 Aligned_cols=84 Identities=13% Similarity=0.267 Sum_probs=65.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
..++.+++|| +|.| ++++||+++|.+ ||. |+.|.|..+...++...||+|.|.+.+....++...+. ..|+
T Consensus 21 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 93 (115)
T 2cpz_A 21 EGPEGANLFI---YHLPQEFGDQDLLQMFMP-FGN-VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG--FQIG 93 (115)
T ss_dssp CCSTTCCEEE---ESCCSSCCHHHHHHHHGG-GSC-CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 3456789998 7888 999999999996 999 55666555355788899999999999988877742111 2589
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 94 g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 94 MKRLKVQLKRSKN 106 (115)
T ss_dssp TEECEEECCCCSC
T ss_pred CEEEEEEEcCCCC
Confidence 9999888777765
No 32
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=2.9e-07 Score=69.92 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=65.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+..+. .++...||.|.|.+.+....++..-+. ..|+|
T Consensus 14 ~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g 85 (100)
T 2do4_A 14 SLEKHKLFI---SGLPFSCTKEELEEICKA-HGT-VKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDG--MTIKE 85 (100)
T ss_dssp CCCCSCEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT--EESSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-eEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCC--CEECC
Confidence 456789999 7888 999999999996 998 5666666533 788889999999999888877742111 36899
Q ss_pred eeeEEEecccCCC
Q 038800 268 KHIWARKYERRDQ 280 (280)
Q Consensus 268 k~iWarky~pk~~ 280 (280)
+.+-++...|+++
T Consensus 86 ~~l~v~~a~~~~~ 98 (100)
T 2do4_A 86 NIIKVAISNSGPS 98 (100)
T ss_dssp CEEEEEECCCCSC
T ss_pred EEEEEEECCCCCC
Confidence 9999988887753
No 33
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=8.1e-07 Score=67.90 Aligned_cols=84 Identities=11% Similarity=0.333 Sum_probs=65.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeecc-CCCCCCCceEEEEEcchhhHHHHhCCC-ceeEEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQEN-VPSNEQPLFARLVLQSVANVDQILSGR-RIAKFR 264 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~-~~~~~qplfarivf~s~~~v~~vL~g~-~~~Kf~ 264 (280)
...+.+++|| +|.| ++++||+++|.+ ||. |+.|.|..+ ...++...||+|.|.+.+....++... + ...
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~ 83 (107)
T 2cph_A 11 KKQTTSKILV---RNIPFQANQREIRELFST-FGE-LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH--STH 83 (107)
T ss_dssp CSSCCCCEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHT--CCB
T ss_pred cCCCCCEEEE---eCCCCcCCHHHHHHHHHc-cCC-eEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhcc--CCe
Confidence 3456789998 7888 999999999997 998 677777664 357889999999999988887776421 1 125
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-++...|++
T Consensus 84 ~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 84 LYGRRLVLEWADSEV 98 (107)
T ss_dssp SSSCBCEEEECCCCC
T ss_pred ECCCEEEEEeCCCCC
Confidence 789999888777664
No 34
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.50 E-value=4e-07 Score=70.27 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=65.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-.+..+++...||+|.|.+.+....++..-+. ..|+
T Consensus 22 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~ 94 (110)
T 1oo0_B 22 RSVEGWILFV---TSIHEEAQEDEIQEKFCD-YGE-IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIM 94 (110)
T ss_dssp CBTTBEEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 3566789998 7888 999999999986 998 67777755456788899999999998887776642111 2579
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 95 g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 95 GQTIQVDWCFVKG 107 (110)
T ss_dssp TEECEEEESEESS
T ss_pred CcEEEEEEcccCC
Confidence 9999877776654
No 35
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=4.2e-07 Score=69.52 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=64.5
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf~ 264 (280)
..+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||.|.|.+.+....++. |. .
T Consensus 20 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-----~ 89 (106)
T 1p27_B 20 SVEGWILFV---TGVHEEATEEDIHDKFAE-YGE-IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-----D 89 (106)
T ss_dssp BTTBEEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC-----B
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHhc-cCC-eEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC-----E
Confidence 456789998 7888 999999999986 999 5566665535678889999999999888777664 53 5
Q ss_pred EcCeeeEEEecccCCC
Q 038800 265 INGKHIWARKYERRDQ 280 (280)
Q Consensus 265 Ingk~iWarky~pk~~ 280 (280)
|+|+.+-++...|+++
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 90 LMGQPISVDWCFVRGP 105 (106)
T ss_dssp SSSSBCEEEESEESSC
T ss_pred ECCcEEEEEeecCCCC
Confidence 7899998887777653
No 36
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=4.6e-07 Score=71.06 Aligned_cols=83 Identities=8% Similarity=0.131 Sum_probs=66.6
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
..+.+.+|+|| +|.| ++++||++||.. ||..-+.|.|-.+. .++...||+|.|.+.+....+|.- + ...|
T Consensus 10 ~~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~--~~~~ 81 (114)
T 2cpy_A 10 DVNSAKVCAHI---TNIPFSITKMDVLQFLEG-IPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-H--RKKL 81 (114)
T ss_dssp SCCSCCCEEEE---ESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-C--SEEE
T ss_pred CCCCCccEEEE---eCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-C--CCcc
Confidence 45778899988 8988 999999999987 88742556665533 788999999999999999999875 2 3578
Q ss_pred cCeeeEEEecccC
Q 038800 266 NGKHIWARKYERR 278 (280)
Q Consensus 266 ngk~iWarky~pk 278 (280)
+|+.|-++...|+
T Consensus 82 ~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 82 NGREAFVHVVTLE 94 (114)
T ss_dssp TTEEEEEEEECHH
T ss_pred CCeEEEEEECCHH
Confidence 9999988776554
No 37
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.47 E-value=3.8e-07 Score=73.69 Aligned_cols=79 Identities=23% Similarity=0.471 Sum_probs=64.4
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCe
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGK 268 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk 268 (280)
++.||+|| +|.| ++++||+++|.+ ||. |++|.+-.+..++++.+||.|.|.+.+....++.... .++|+
T Consensus 1 k~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~----~~~g~ 71 (167)
T 2cjk_A 1 KESCKMFI---GGLNWDTTEDNLREYFGK-YGT-VTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQH----ILDGK 71 (167)
T ss_dssp CGGGEEEE---CSCCTTCCHHHHHHHHTT-TCC-EEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCC----EETTE
T ss_pred CCCcEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEEECCCCCCccceEEEEEccHHHHHHHHhccc----ccCCe
Confidence 36789998 8988 999999999997 999 5666655534678999999999999999998888533 79999
Q ss_pred eeEEEecccC
Q 038800 269 HIWARKYERR 278 (280)
Q Consensus 269 ~iWarky~pk 278 (280)
.+.++...|+
T Consensus 72 ~i~v~~~~~~ 81 (167)
T 2cjk_A 72 VIDPKRAIPR 81 (167)
T ss_dssp ECCCEECCCH
T ss_pred Ecccccccch
Confidence 9877765543
No 38
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.47 E-value=1.7e-07 Score=67.52 Aligned_cols=73 Identities=22% Similarity=0.427 Sum_probs=59.7
Q ss_pred ceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCeeeE
Q 038800 194 RTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGKHIW 271 (280)
Q Consensus 194 Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk~iW 271 (280)
+|+|| +|.| ++++|++++|.+ ||+ |+.+.+..+..++++.+||.|.|.+.+....++...+ ..++|+.+=
T Consensus 1 ~~l~v---~nlp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~---~~~~g~~l~ 72 (77)
T 1uaw_A 1 CKMFI---GGLSWQTTQEGLREYFGQ-FGE-VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTID 72 (77)
T ss_dssp CCEEE---ESCCSSCCSHHHHHHHTT-TSC-CCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT---CCCSSCCCE
T ss_pred CEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC---CccCCEEEE
Confidence 46776 7877 999999999986 999 5666665545678899999999999999999998655 578999886
Q ss_pred EEe
Q 038800 272 ARK 274 (280)
Q Consensus 272 ark 274 (280)
++.
T Consensus 73 v~~ 75 (77)
T 1uaw_A 73 PKV 75 (77)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.47 E-value=9.5e-07 Score=66.68 Aligned_cols=77 Identities=14% Similarity=0.306 Sum_probs=62.9
Q ss_pred CceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEEEcC
Q 038800 193 DRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFRING 267 (280)
Q Consensus 193 ~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~Ing 267 (280)
.|++|| +|.| ++++||+++|.+ ||. |++|.+-.+..+++...||.|.|.+.+....++ +|. .|+|
T Consensus 2 ~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-----~~~g 71 (96)
T 2x1f_A 2 SRVVYL---GSIPYDQTEEQILDLCSN-VGP-VINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY-----QLGS 71 (96)
T ss_dssp CSEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC-----EETT
T ss_pred CcEEEE---ECCCCCCCHHHHHHHHHh-cCC-EEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-----eECC
Confidence 478988 6877 999999999996 998 667777664567888999999999988877766 452 6899
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-++...|++
T Consensus 72 ~~l~V~~a~~~~ 83 (96)
T 2x1f_A 72 RFLKCGYSSNSD 83 (96)
T ss_dssp EECEEEECSCSS
T ss_pred eEEEEEEcCCCC
Confidence 999888777764
No 40
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=1e-06 Score=67.19 Aligned_cols=83 Identities=12% Similarity=0.264 Sum_probs=63.2
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
..+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.|..+. +....||.|.|.+.+....++..-+. ..|
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 80 (103)
T 2cq3_A 10 ESKSTPKRLHV---SNIPFRFRDPDLRQMFGQ-FGK-ILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHG--TVV 80 (103)
T ss_dssp CCSCCCCEEEE---ESCCTTCCHHHHHHHGGG-TSC-EEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTT--CEE
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 34567799999 7888 999999999996 999 5666665522 34788999999998888777642111 148
Q ss_pred cCeeeEEEecccCC
Q 038800 266 NGKHIWARKYERRD 279 (280)
Q Consensus 266 ngk~iWarky~pk~ 279 (280)
+|+.+-++...|+.
T Consensus 81 ~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 81 EGRKIEVNNATARV 94 (103)
T ss_dssp TTEECEEEECCSSC
T ss_pred CCEEEEEEEcccCC
Confidence 99999888887765
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.46 E-value=7.7e-07 Score=65.14 Aligned_cols=74 Identities=15% Similarity=0.363 Sum_probs=59.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~ 264 (280)
+.+.|++|| +|.| ++++||+++|.+ ||. |+.|.+-.+..+++...||.|.|.+.+....++ +|. .
T Consensus 4 ~~~~~~l~V---~nl~~~~~~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-----~ 73 (85)
T 3mdf_A 4 ATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD-ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-----E 73 (85)
T ss_dssp CCCSSEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-----E
T ss_pred CCCCCEEEE---ECCCCCCCHHHHHHHHhc-cCC-EEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC-----E
Confidence 557799988 7887 999999999986 998 566666543567888999999999988877766 553 4
Q ss_pred EcCeeeEEE
Q 038800 265 INGKHIWAR 273 (280)
Q Consensus 265 Ingk~iWar 273 (280)
++|+.+-++
T Consensus 74 ~~g~~l~v~ 82 (85)
T 3mdf_A 74 LFGRTIRVN 82 (85)
T ss_dssp ETTEECEEE
T ss_pred ECCcEEEEE
Confidence 799988665
No 42
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.44 E-value=1.1e-06 Score=67.78 Aligned_cols=76 Identities=18% Similarity=0.349 Sum_probs=60.0
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEEEc
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFRIN 266 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~In 266 (280)
+..+||| ++.| +|++||+++|.+ ||. |++|.+-.+..+++..+||+|.|.+.+....++ +|. .|+
T Consensus 18 ~gt~lfV---~nLp~~~te~~L~~~F~~-~G~-I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-----~~~ 87 (99)
T 4fxv_A 18 QGTNLIV---NYLPQNMTQDELRSLFSS-IGE-VESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL-----RLQ 87 (99)
T ss_dssp CCSEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC-----EET
T ss_pred CCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC-----EEC
Confidence 4467887 8988 999999999986 999 556655543567888999999999988877665 453 589
Q ss_pred CeeeEEEeccc
Q 038800 267 GKHIWARKYER 277 (280)
Q Consensus 267 gk~iWarky~p 277 (280)
|+.+-++...|
T Consensus 88 gr~l~V~~AkP 98 (99)
T 4fxv_A 88 SKTIKVSYARP 98 (99)
T ss_dssp TEECEEEECCB
T ss_pred CEEEEEEEeeC
Confidence 99998776656
No 43
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.43 E-value=2e-07 Score=75.47 Aligned_cols=85 Identities=14% Similarity=0.291 Sum_probs=66.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.++..+++|| +|.| ++++||+++|.+ ||. |+.|.+-.+..+++...||+|.|.+.+....++..-+. ..|+
T Consensus 42 ~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~-I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng--~~i~ 114 (129)
T 2kxn_B 42 NPDPNCCLGV---FGLSLYTTERDLREVFSK-YGP-IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG--MELD 114 (129)
T ss_dssp CCCCSSCBCE---ETCTTSCCHHHHHHHHTT-TSC-EEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT--CCSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4667799998 7888 999999999986 999 55666655356788999999999998887777652111 2479
Q ss_pred CeeeEEEecccCCC
Q 038800 267 GKHIWARKYERRDQ 280 (280)
Q Consensus 267 gk~iWarky~pk~~ 280 (280)
|+.+-++...||++
T Consensus 115 g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 115 GRRIRVDFSITKRP 128 (129)
T ss_dssp SSCCEESCCSSSSC
T ss_pred CEEEEEEEecCCCC
Confidence 99999888888764
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.42 E-value=1.4e-06 Score=63.41 Aligned_cols=76 Identities=12% Similarity=0.284 Sum_probs=60.5
Q ss_pred eEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEEEEcCee
Q 038800 195 TMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKFRINGKH 269 (280)
Q Consensus 195 t~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf~Ingk~ 269 (280)
|+|| +|.| ++++||+++|.+ ||++ +++.+-.+..+++...||.|.|.+.+....++. |. .|+|+.
T Consensus 3 ~l~V---~nlp~~~t~~~l~~~f~~-~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-----~~~g~~ 72 (83)
T 3md1_A 3 NLFV---GDLNVNVDDETLRNAFKD-FPSY-LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-----DLNGRP 72 (83)
T ss_dssp EEEE---ECCCTTCCHHHHHHHHTT-STTE-EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-----EETTEE
T ss_pred EEEE---eCCCCCCCHHHHHHHHHh-cCCe-eEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC-----eeCCcE
Confidence 5555 7888 999999999986 9984 555554434678899999999999988777755 43 479999
Q ss_pred eEEEecccCCC
Q 038800 270 IWARKYERRDQ 280 (280)
Q Consensus 270 iWarky~pk~~ 280 (280)
+-++...||++
T Consensus 73 l~v~~a~~~~~ 83 (83)
T 3md1_A 73 LRINWAAKLEH 83 (83)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEecCcCCC
Confidence 99998888875
No 45
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=3.9e-07 Score=71.47 Aligned_cols=84 Identities=25% Similarity=0.413 Sum_probs=62.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCC---CCCCceEEEEEcchhhHHHHh------CCC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPS---NEQPLFARLVLQSVANVDQIL------SGR 258 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~---~~qplfarivf~s~~~v~~vL------~g~ 258 (280)
..+.|++|| +|.| ++++||+++|.+ ||.+. ...+.+ ..+ ++...||+|.|.+.+....++ +|.
T Consensus 5 ~~~~~~lfV---gnLp~~~te~~L~~~F~~-~G~i~-~~~~~~-~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~ 78 (114)
T 2dnl_A 5 SSGSRKVFV---GGLPPDIDEDEITASFRR-FGPLV-VDWPHK-AESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGK 78 (114)
T ss_dssp SSCCCCEEE---ECCCTTCCHHHHHHHTTT-TCCCC-EECTTS-SSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred CCCCCEEEE---cCCCCCCCHHHHHHHHHh-cCCEE-EEEeec-CCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCc
Confidence 467799998 7888 999999999996 99966 444444 333 688999999999999888777 443
Q ss_pred ceeEE---EEcCeeeEEEecccCC
Q 038800 259 RIAKF---RINGKHIWARKYERRD 279 (280)
Q Consensus 259 ~~~Kf---~Ingk~iWarky~pk~ 279 (280)
....- .+.+|.+++|.+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~v~p~~~~d 102 (114)
T 2dnl_A 79 LYLCVSSPTIKDKPVQIRPWNLSD 102 (114)
T ss_dssp EEEEECCSSSCSEEEEEECCCCCC
T ss_pred EEEeccCCCcCCCeeeccCCcccC
Confidence 21111 4567788888776653
No 46
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.42 E-value=1e-06 Score=68.86 Aligned_cols=81 Identities=15% Similarity=0.344 Sum_probs=65.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
.+++.+++|| +|.| ++++||+++|.+ ||. |+.|.+-.+..++++.+||+|.|.+.+....++ +|.
T Consensus 22 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~----- 91 (108)
T 2jrs_A 22 GSAGPMRLYV---GSLHFNITEDMLRGIFEP-FGR-IESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF----- 91 (108)
T ss_dssp SCSSCEEEEE---ECCCSSCCHHHHHHHHTT-TSC-EEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC-----
Confidence 4567789988 6877 999999999976 999 566666553567888999999999998877766 453
Q ss_pred EEcCeeeEEEecccCC
Q 038800 264 RINGKHIWARKYERRD 279 (280)
Q Consensus 264 ~Ingk~iWarky~pk~ 279 (280)
.|+|+.+-++...||.
T Consensus 92 ~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 92 ELAGRPMKVGHVTERT 107 (108)
T ss_dssp CSSSSCCEEECSCSSC
T ss_pred EECCEEEEEEEcccCC
Confidence 4899999988887774
No 47
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.42 E-value=7.6e-07 Score=71.39 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=65.6
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
..+++.||+|| +|.| ++++||+++|.+ ||. |++|.+-.+..+++...||+|.|.+.+....++..-+. ..|
T Consensus 37 ~~~~~~~~l~V---~nLp~~~~~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 109 (139)
T 1u6f_A 37 PEPDVLRNLMV---NYIPTTVDEVQLRQLFER-YGP-IESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG--FNI 109 (139)
T ss_dssp CCTTTTSEEEE---ESCSTTCCHHHHHHHHHH-HSC-EEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT--EEC
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 34567799999 7877 999999999997 998 56666654356788899999999999988877753221 358
Q ss_pred cCeeeEEEecccCC
Q 038800 266 NGKHIWARKYERRD 279 (280)
Q Consensus 266 ngk~iWarky~pk~ 279 (280)
+|+.+-++...+++
T Consensus 110 ~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 110 LNKRLKVALAASGH 123 (139)
T ss_dssp SSCEEEEEESSCCC
T ss_pred CCeEEEEEECCCCC
Confidence 89999887776654
No 48
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=1e-06 Score=65.74 Aligned_cols=80 Identities=15% Similarity=0.342 Sum_probs=61.5
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
..++..+++|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||.|.|.+.+....++..-+ ...|
T Consensus 10 ~~~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~ 82 (95)
T 2cqc_A 10 ANPDPNCCLGV---FGLSLYTTERDLREVFSK-YGP-IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN--GMEL 82 (95)
T ss_dssp CSCCGGGCEEE---ESCCSSCCHHHHHHHHHT-TSC-EEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT--TEEE
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-eeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC--CCEE
Confidence 34667899999 6887 999999999987 998 5666665535668888999999999888777765211 1467
Q ss_pred cCeeeEEEe
Q 038800 266 NGKHIWARK 274 (280)
Q Consensus 266 ngk~iWark 274 (280)
+|+.+-++.
T Consensus 83 ~g~~l~v~~ 91 (95)
T 2cqc_A 83 DGRRIRVSG 91 (95)
T ss_dssp TTEEEEEEC
T ss_pred CCEEEEEEe
Confidence 999886654
No 49
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=3.3e-07 Score=71.29 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=63.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
..+.||+|| +|.| ++++||+++|.+ ||. |+.|.+-.+..+++...||+|.|.+.+....++ ..+ ...|+|
T Consensus 22 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~--g~~~~g 93 (114)
T 2cq4_A 22 ERDARTVFC---MQLAARIRPRDLEDFFSA-VGK-VRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT--GQRLLG 93 (114)
T ss_dssp HHHHTEEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT--TEEETT
T ss_pred cCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-EeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC--CCEeCC
Confidence 346689988 7877 999999999986 998 556666543566888999999999998888777 322 236799
Q ss_pred eeeEEEecccC
Q 038800 268 KHIWARKYERR 278 (280)
Q Consensus 268 k~iWarky~pk 278 (280)
+.+-++...|+
T Consensus 94 ~~l~V~~a~~~ 104 (114)
T 2cq4_A 94 VPIIVQASQAE 104 (114)
T ss_dssp EEEEEEEHHHH
T ss_pred eEEEEEecCCC
Confidence 99988876654
No 50
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.40 E-value=1.2e-06 Score=67.64 Aligned_cols=81 Identities=16% Similarity=0.435 Sum_probs=63.2
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+|+|| ++.| ++++||+++|.+ ||. |+.|.+.. .++...||+|.|.+.+....++...+. ..|+
T Consensus 18 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 87 (109)
T 1x4a_A 18 AGNNDCRIYV---GNLPPDIRTKDIEDVFYK-YGA-IRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDG--YDYD 87 (109)
T ss_dssp CCCCSSEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 3557789998 6877 999999999997 999 67777744 356788999999999888777742111 2589
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 88 g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 88 GYRLRVEFPRSGR 100 (109)
T ss_dssp TEECEEECCCCCC
T ss_pred CeEEEEEEcccCC
Confidence 9999988877665
No 51
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.5e-06 Score=64.83 Aligned_cols=78 Identities=14% Similarity=0.304 Sum_probs=60.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+++|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||.|.|.+.+....++...+. ..|+
T Consensus 12 ~~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 84 (94)
T 2e5h_A 12 LAPSKSTVYV---SNLPFSLTNNDLYRIFSK-YGK-VVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN--KQLF 84 (94)
T ss_dssp CCCCTTSEEE---ESCCTTSCHHHHHHHTTT-TSC-EEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT--EEET
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-eEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC--CeeC
Confidence 4567799999 6888 999999999986 999 66777766456688899999999999988777742111 3678
Q ss_pred CeeeEEE
Q 038800 267 GKHIWAR 273 (280)
Q Consensus 267 gk~iWar 273 (280)
|+.+-++
T Consensus 85 g~~l~v~ 91 (94)
T 2e5h_A 85 GRVIKAS 91 (94)
T ss_dssp TEEEEEE
T ss_pred CcEEEEE
Confidence 9888554
No 52
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=4.7e-07 Score=69.07 Aligned_cols=80 Identities=11% Similarity=0.320 Sum_probs=64.9
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAK 262 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~K 262 (280)
..+.+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+..+ .++...||+|.|.+.+....++. |.
T Consensus 10 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~---- 78 (103)
T 2d9p_A 10 ITRYQVVNLYV---KNLDDGIDDERLRKAFSP-FGT-ITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR---- 78 (103)
T ss_dssp CCCSSCCCEEE---ECCCTTCCHHHHHHTTTT-TSC-EEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTC----
T ss_pred cCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCC----
Confidence 34567899999 6887 999999999996 999 777777773 68889999999999888777654 53
Q ss_pred EEEcCeeeEEEecccCC
Q 038800 263 FRINGKHIWARKYERRD 279 (280)
Q Consensus 263 f~Ingk~iWarky~pk~ 279 (280)
.|+|+.+-++...|++
T Consensus 79 -~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 79 -IVATKPLYVALAQRKE 94 (103)
T ss_dssp -BSSSSBCEEEECSSCC
T ss_pred -EeCCcEEEEEEecccc
Confidence 3699999888777665
No 53
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.38 E-value=1.4e-06 Score=71.16 Aligned_cols=84 Identities=12% Similarity=0.244 Sum_probs=65.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.....+++|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++..+||+|.|.+.+....++..-+. ..|+
T Consensus 66 ~~~~~~~l~v---~nl~~~~~~~~l~~~F~~-~G~-v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 138 (158)
T 2kn4_A 66 DVEGMTSLKV---DNLTYRTSPDTLRRVFEK-YGR-VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG--AVLD 138 (158)
T ss_dssp CCCBCCEEEE---ESCCTTCCHHHHHHHHHH-HSC-EEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT--EESS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 3456789988 6877 999999999975 998 56677666456789999999999999988887753221 2589
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 139 g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 139 GRELRVQMARYGR 151 (158)
T ss_dssp SSEEEEEEECCSS
T ss_pred CeEEEEEECCCCC
Confidence 9999888777654
No 54
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.38 E-value=9.8e-07 Score=69.74 Aligned_cols=82 Identities=13% Similarity=0.283 Sum_probs=63.5
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-.+. +++...||+|.|.+.+..+.++..-+. ..|+|
T Consensus 4 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g--~~~~g 75 (116)
T 2fy1_A 4 ADHPGKLFI---GGLNRETNEKMLKAVFGK-HGP-ISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNG--KSLHG 75 (116)
T ss_dssp TCSCCEEEE---ECCTTTCCHHHHHHHHHT-SSC-CSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSS--CBCSS
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC--CEECC
Confidence 456789998 7888 999999999996 999 6777776633 788999999999999888777642111 14799
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-++...|+.
T Consensus 76 ~~l~V~~a~~~~ 87 (116)
T 2fy1_A 76 KAIKVEQAKKPS 87 (116)
T ss_dssp SBCEEEECCCSS
T ss_pred EEEEEEECCCCC
Confidence 998877766543
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.38 E-value=1.4e-06 Score=66.62 Aligned_cols=84 Identities=12% Similarity=0.200 Sum_probs=63.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+-.+..+++...||+|.|.+.+....++ +|... +
T Consensus 9 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~ 81 (106)
T 2dgp_A 9 KDHDAIKLFI---GQIPRNLDEKDLKPLFEE-FGK-IYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT--L 81 (106)
T ss_dssp CCTTCEEEEE---ESCCTTCCHHHHHHHHHH-HSC-CCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC--C
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc--c
Confidence 4567799988 7888 999999999997 998 666666554567889999999999988766665 46441 0
Q ss_pred EEcCeeeEEEecccCC
Q 038800 264 RINGKHIWARKYERRD 279 (280)
Q Consensus 264 ~Ingk~iWarky~pk~ 279 (280)
..+|+.+-++...|++
T Consensus 82 ~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 82 PGMNRPIQVKPADSES 97 (106)
T ss_dssp TTCSSCCEEEECCCCS
T ss_pred CCCCceEEEEECCccc
Confidence 1167888877776654
No 56
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.38 E-value=8.7e-07 Score=73.34 Aligned_cols=82 Identities=18% Similarity=0.433 Sum_probs=65.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
-+++.|++|| +|.| ++++||+++|.+ ||.+.+-..+.+ ..+++..+||+|.|.+.+....+|... ...++
T Consensus 9 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~-~~~g~~~g~afV~f~~~~~A~~A~~~~---~~~~~ 80 (196)
T 1l3k_A 9 EPEQLRKLFI---GGLSFETTDESLRSHFEQ-WGTLTDCVVMRD-PNTKRSRGFGFVTYATVEEVDAAMNAR---PHKVD 80 (196)
T ss_dssp CCGGGGEEEE---ESCCTTCCHHHHHHHHGG-GSCEEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHTC---SCEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCCEEEEEEEEc-CCCCCccceEEEEeCCHHHHHHHHhcC---CCEEC
Confidence 4678899999 7988 999999999996 999544444444 466888999999999999999998752 24689
Q ss_pred CeeeEEEecccC
Q 038800 267 GKHIWARKYERR 278 (280)
Q Consensus 267 gk~iWarky~pk 278 (280)
|+.+.++...++
T Consensus 81 g~~l~v~~~~~~ 92 (196)
T 1l3k_A 81 GRVVEPKRAVSR 92 (196)
T ss_dssp TEECEEEECCC-
T ss_pred CEEeeeecccCc
Confidence 999988876654
No 57
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=1.9e-06 Score=65.62 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=61.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
..+.+++|| +|.| ++++||+++|.+ ||. |+.|.|..+. +....||+|.|.+.+....++...+. ..|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g 82 (103)
T 2cqi_A 12 DGQPRTLYV---GNLSRDVTEVLILQLFSQ-IGP-CKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNG--RKILG 82 (103)
T ss_dssp SCCCCEEEE---ESCCTTCCHHHHHHHHHH-HSC-EEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTT--EEETT
T ss_pred CCCCCEEEE---eCCCccCCHHHHHHHHHh-cCC-EeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCC--CCcCC
Confidence 456789998 7888 999999999986 998 6667666532 33578999999998887777652111 25899
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-++...|++
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2cqi_A 83 KEVKVNWATTPS 94 (103)
T ss_dssp EEEEEEECCCTT
T ss_pred CeEEEEECCCCc
Confidence 999887776654
No 58
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.37 E-value=1.1e-06 Score=69.22 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=61.4
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCe
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGK 268 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk 268 (280)
.+.||+|| +|.| ++++||+++|.+ ||+ |+.|.|..+...++...||+|.|.+.+....++. .+. ..|+|+
T Consensus 34 ~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g--~~~~g~ 105 (124)
T 2jwn_A 34 IDKRSVYV---GNVDYGSTAQDLEAHFSS-CGS-INRITILCDKFSGHPKGYAYIEFAERNSVDAAVA-MDE--TVFRGR 105 (124)
T ss_dssp HHHTEEEE---EEECTTCCHHHHHHHHHT-TSC-EEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT-TTT--CEETTE
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh-cCC--CeECCe
Confidence 45789998 6877 999999999996 998 5555555435678999999999999999888883 222 258999
Q ss_pred eeEEEecccC
Q 038800 269 HIWARKYERR 278 (280)
Q Consensus 269 ~iWarky~pk 278 (280)
.+-++...+.
T Consensus 106 ~l~V~~a~~~ 115 (124)
T 2jwn_A 106 TIKVLPKRTN 115 (124)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEECCCC
Confidence 9976655443
No 59
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=1.6e-06 Score=65.54 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=62.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+...+|+|| +|.| ++++||+++|.+ ||.++..|.+-.+..+++...||.|.|.+.+....++..-+. ..++
T Consensus 5 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 78 (99)
T 2div_A 5 SSGMAASLWM---GDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKING--KPLP 78 (99)
T ss_dssp CCSSSSEEEE---CSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTT--SEES
T ss_pred CCCCccEEEE---eCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcC--CccC
Confidence 4567799998 8888 999999999997 999653666655356788999999999999888877763221 2578
Q ss_pred Cee----eEEEeccc
Q 038800 267 GKH----IWARKYER 277 (280)
Q Consensus 267 gk~----iWarky~p 277 (280)
|+. +-+....|
T Consensus 79 g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 79 GATPAKRFKLNYATY 93 (99)
T ss_dssp SCSSCEECCEEETTC
T ss_pred CCCcceeEEEeecCC
Confidence 888 65544433
No 60
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.37 E-value=9.3e-07 Score=68.99 Aligned_cols=78 Identities=13% Similarity=0.260 Sum_probs=60.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.|..+..+++...||+|.|.+.+....++..-+. ..|+
T Consensus 36 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 108 (118)
T 2khc_A 36 EGPEGCNLFI---YHLPQEFTDTDLASTFLP-FGN-VISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG--FQVG 108 (118)
T ss_dssp CCCCSEEEEE---ECSCTTCCHHHHHHHTTT-SCE-EEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC--CEEC
Confidence 4567799988 7888 999999999996 998 66676655356788999999999999988877753221 2588
Q ss_pred CeeeEEE
Q 038800 267 GKHIWAR 273 (280)
Q Consensus 267 gk~iWar 273 (280)
|+.+-++
T Consensus 109 g~~l~V~ 115 (118)
T 2khc_A 109 TKRLKVQ 115 (118)
T ss_dssp TEECCEE
T ss_pred CEEEEEE
Confidence 9887554
No 61
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.37 E-value=6.2e-07 Score=72.93 Aligned_cols=84 Identities=13% Similarity=0.263 Sum_probs=65.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-.+..+++...||.|.|.+.+....++..-+.. .|+
T Consensus 43 ~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~-i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~--~i~ 115 (135)
T 2lea_A 43 DVEGMTSLKV---DNLTYRTSPDTLRRVFEK-YGR-VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLD 115 (135)
T ss_dssp SGGGCCCEEE---ECCCSSCHHHHHHHHHGG-GSC-CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC--CSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC--EEC
Confidence 3556789998 7888 999999999987 998 566666553557889999999999999988888642222 389
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 116 g~~l~V~~a~~~~ 128 (135)
T 2lea_A 116 GRELRVQMARYGR 128 (135)
T ss_dssp SSCCEEEECCCCC
T ss_pred CEEEEEEECCCCC
Confidence 9999887776654
No 62
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.36 E-value=1.3e-06 Score=68.92 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=59.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~ 264 (280)
+...||+|| ++.| +++++++++|.+ ||.+ ++|.+-.+..+++..+||+|.|.+.+....++ +|. .
T Consensus 3 ~~p~~~lfV---~nL~~~~te~~L~~~F~~-~G~i-~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~-----~ 72 (110)
T 3s8s_A 3 QIPLKEVTF---ARLNDNVRETFLKDMCRK-YGEV-EEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT-----S 72 (110)
T ss_dssp CSCCCEEEE---ESCCTTCCHHHHHHHHTT-TSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----E
T ss_pred CCCCcEEEE---ECCCCCCCHHHHHHHHHh-cCCe-eEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC-----E
Confidence 345689988 7877 999999999986 9995 45544443567899999999999988877764 564 5
Q ss_pred EcCeeeEEEecc
Q 038800 265 INGKHIWARKYE 276 (280)
Q Consensus 265 Ingk~iWarky~ 276 (280)
|+|+.+-+..-.
T Consensus 73 ~~gr~i~V~~a~ 84 (110)
T 3s8s_A 73 VMGNIIHAQLDI 84 (110)
T ss_dssp ETTEECEEEECS
T ss_pred ECCeEEEEEECC
Confidence 899999876543
No 63
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=2.1e-06 Score=64.03 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=65.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+++|| +|.| ++++||+++|.+ | . |+.|.+-.+ ..++..+||.|.|.+.+....++. .+. ..|+
T Consensus 6 ~~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~-~-i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g--~~~~ 75 (91)
T 2dgw_A 6 SGTTCHTVKL---RGAPFNVTEKNVMEFLAP-L-K-PVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNR--EYMG 75 (91)
T ss_dssp CCCCCCEEEE---ECCCSSCCHHHHHHHHTT-S-C-CSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCS--EEET
T ss_pred CCCCccEEEE---ECCCCCCCHHHHHHHHhh-C-C-ceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCC--ceeC
Confidence 3567789988 8988 999999999997 6 5 667766663 678889999999999998888887 432 4689
Q ss_pred CeeeEEEecccCCC
Q 038800 267 GKHIWARKYERRDQ 280 (280)
Q Consensus 267 gk~iWarky~pk~~ 280 (280)
|+.+-++...|+++
T Consensus 76 gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 76 GRYIEVFREKSGPS 89 (91)
T ss_dssp TEEEEEEEESSCCC
T ss_pred CcEEEEEECCcCCC
Confidence 99999988877653
No 64
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=1.6e-06 Score=66.91 Aligned_cols=82 Identities=20% Similarity=0.228 Sum_probs=64.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+++|| +|.| ++++||++||.. ||...+.|.|-.+ ..++...||+|.|.+.+....+|.- + .-.|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~--~~~~~ 82 (104)
T 1wg5_A 11 DTANDGFVRL---RGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-H--KERIG 82 (104)
T ss_dssp SCSCCCEEEE---ESCCTTCCHHHHHHHTTT-CCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-T--TCCSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-C--cchhC
Confidence 3456678887 8988 999999999997 9986665877663 6789999999999999999998875 2 23578
Q ss_pred CeeeEEEecccC
Q 038800 267 GKHIWARKYERR 278 (280)
Q Consensus 267 gk~iWarky~pk 278 (280)
|+.|-+.+-.++
T Consensus 83 gr~i~v~~~~~~ 94 (104)
T 1wg5_A 83 HRYIEIFKSSRA 94 (104)
T ss_dssp SSCCEEEEECTT
T ss_pred CcEEEEEECCHH
Confidence 988877655443
No 65
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=7.3e-07 Score=67.95 Aligned_cols=81 Identities=11% Similarity=0.176 Sum_probs=62.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf~ 264 (280)
+...+++|| +|.| ++++||+++|.+.||. |+.|.+-.+. .++...||+|.|.+.+....++. |.. .
T Consensus 6 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~~~G~-v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~----~ 76 (104)
T 2dhg_A 6 SGPEYSLFV---GDLTPDVDDGMLYEFFVKVYPS-CRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAV----G 76 (104)
T ss_dssp SSCCCCEEE---ECCCTTCCHHHHHHHHHHHCTT-EEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCC----S
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHHhCCC-eEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCc----c
Confidence 455689988 7888 9999999999987999 5666665534 78889999999999998877765 432 2
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-++...|++
T Consensus 77 ~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 77 LGSKPVRLSVAIPKA 91 (104)
T ss_dssp SSSSCCCCCBCCCCC
T ss_pred cCCEeEEEEEccCCC
Confidence 789888666665543
No 66
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.35 E-value=2.9e-06 Score=67.45 Aligned_cols=79 Identities=14% Similarity=0.322 Sum_probs=63.1
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
..+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+..+..+++...||+|.|.+.+....++..-+. ..|
T Consensus 58 ~~~~~~~~l~v---~nlp~~~~~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~ 130 (140)
T 2ku7_A 58 GSATTKRVLYV---GGLAEEVDDKVLHAAFIP-FGD-ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE--SEL 130 (140)
T ss_dssp SSCSSCCEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE--EEE
T ss_pred CCCCCCcEEEE---EeCCCCCCHHHHHHHHHh-cCC-EEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC--CEE
Confidence 34567899998 7888 999999999986 999 66677765456788999999999999998888854332 368
Q ss_pred cCeeeEEE
Q 038800 266 NGKHIWAR 273 (280)
Q Consensus 266 ngk~iWar 273 (280)
+|+.+-++
T Consensus 131 ~g~~l~v~ 138 (140)
T 2ku7_A 131 FGRTIRVN 138 (140)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 89988665
No 67
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.35 E-value=9e-07 Score=69.83 Aligned_cols=81 Identities=16% Similarity=0.345 Sum_probs=63.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
...+.+|+|| +|.| ++++||+++|.+ ||. |+.|.|-.+..++....||+|.|.+.+....++ +|.
T Consensus 18 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~----- 87 (126)
T 3ex7_B 18 RSVEGWILFV---TGVHEEATEEDIHDKFAE-YGE-IKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ----- 87 (126)
T ss_dssp CCSSSEEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-----
Confidence 3556789988 7887 999999999996 998 566666543457888999999999988877765 553
Q ss_pred EEcCeeeEEEecccCC
Q 038800 264 RINGKHIWARKYERRD 279 (280)
Q Consensus 264 ~Ingk~iWarky~pk~ 279 (280)
.|+|+.+-+....|+.
T Consensus 88 ~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 88 DLMGQPISVDWCFVRG 103 (126)
T ss_dssp BSSSSBCEEEESEESS
T ss_pred eeCCeEEEEEEecCCC
Confidence 3699999877666553
No 68
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=2.8e-06 Score=64.31 Aligned_cols=78 Identities=13% Similarity=0.234 Sum_probs=60.8
Q ss_pred CCCCCceEEEEccCCCcCCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCe
Q 038800 189 ASEDDRTMFLTFSRGFPVTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGK 268 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~Pvse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk 268 (280)
.+.+.+|+|| +|+.++++||+++|.+ ||. |+.|.|. +...||+|.|.+.+....++...+. ..|+|+
T Consensus 11 ~~~~~~~l~V---~n~~~t~~~l~~~F~~-~G~-i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~g~ 77 (97)
T 1x5p_A 11 APRKGNTLYV---YGEDMTPTLLRGAFSP-FGN-IIDLSMD------PPRNCAFVTYEKMESADQAVAELNG--TQVESV 77 (97)
T ss_dssp CCCCCSEEEE---ECSSCCHHHHHHHHTT-TSC-EEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTT--EEETTE
T ss_pred CCCCCCEEEE---cCCCCCHHHHHHHHhh-CCC-EEEEEec------CCCCEEEEEECCHHHHHHHHHHhCC--CeECCe
Confidence 4567789999 4689999999999986 998 6777773 3457999999999988887743221 257999
Q ss_pred eeEEEecccCC
Q 038800 269 HIWARKYERRD 279 (280)
Q Consensus 269 ~iWarky~pk~ 279 (280)
.+-++...|++
T Consensus 78 ~l~v~~a~~~~ 88 (97)
T 1x5p_A 78 QLKVNIARKQP 88 (97)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCC
Confidence 99887776664
No 69
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.34 E-value=9.6e-07 Score=63.31 Aligned_cols=68 Identities=18% Similarity=0.356 Sum_probs=55.4
Q ss_pred CCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCeeeEEEe
Q 038800 202 RGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGKHIWARK 274 (280)
Q Consensus 202 ~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk~iWark 274 (280)
+|.| ++++||+++|.+ ||+ |+.+.+-.+..+++...||.|.|.+.+....++.-.. ..|+|+.+-++.
T Consensus 5 ~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~---~~~~g~~l~v~~ 74 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGG-FGE-VESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY---HNVGLSKCEIKV 74 (75)
T ss_dssp SCCCSSCCHHHHHHHHHH-HSC-CSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS---CCBTTBCCCEEE
T ss_pred eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC---CeECCEEEEEEE
Confidence 8888 999999999997 999 6777775545668899999999999999999988422 358999886654
No 70
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=4.9e-07 Score=68.79 Aligned_cols=83 Identities=13% Similarity=0.228 Sum_probs=63.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
.++.||+|| +|.| ++++||+++|.+ ||. |+.+.+-.+..+++...||.|.|.+.+....++...+. ..++|
T Consensus 5 ~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g 77 (104)
T 1p1t_A 5 DRSLRSVFV---GNIPYEATEEQLKDIFSE-VGP-VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG--REFSG 77 (104)
T ss_dssp HHHHSCEEE---ESCCTTSCHHHHHHHHHT-TSC-CSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSS--BSCSS
T ss_pred CCCccEEEE---eCCCCcCCHHHHHHHHHh-cCC-eeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCC--CeeCC
Confidence 346689988 7888 999999999996 999 55565554356788899999999998887776642221 13699
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-++...|++
T Consensus 78 ~~l~v~~a~~~~ 89 (104)
T 1p1t_A 78 RALRVDNAASEK 89 (104)
T ss_dssp SCBEEEETTCTT
T ss_pred cEEEEEeCCCcc
Confidence 999888776654
No 71
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.33 E-value=3.3e-07 Score=68.17 Aligned_cols=77 Identities=18% Similarity=0.353 Sum_probs=56.7
Q ss_pred ceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCeeeE
Q 038800 194 RTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGKHIW 271 (280)
Q Consensus 194 Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk~iW 271 (280)
||+|| +|.| ++++||+++|.+ ||. |++|.+..+..+++...||.|.|.+.+ ...++...+.. .|+|+.+-
T Consensus 2 ~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~--~~~g~~l~ 73 (90)
T 2ki2_A 2 RNIYV---GNLVYSATSEQVKELFSQ-FGK-VFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT--DFMGRTIR 73 (90)
T ss_dssp EEEEE---EEECTTSSHHHHTTTHHH-HTC-CSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS--CCSSSSCS
T ss_pred cEEEE---CCCCCCCCHHHHHHHHHh-cCC-EEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC--EECCeEEE
Confidence 67887 6777 999999999997 998 566666554567889999999999999 66665432211 37899887
Q ss_pred EEecccC
Q 038800 272 ARKYERR 278 (280)
Q Consensus 272 arky~pk 278 (280)
++...|+
T Consensus 74 V~~a~~~ 80 (90)
T 2ki2_A 74 VTEANPK 80 (90)
T ss_dssp EEEC---
T ss_pred EEEcCCC
Confidence 7665554
No 72
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=2e-06 Score=64.76 Aligned_cols=77 Identities=27% Similarity=0.535 Sum_probs=58.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+...|++|| +|.| ++++||+++|.+ ||. |+.|.+.. ..++ ||+|.|.+.+....++. .+ ...|+|
T Consensus 5 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~-v~~v~~~~--~~g~---~afV~f~~~~~a~~ai~-l~--g~~~~g 71 (94)
T 2e5g_A 5 SSGLRSVFV---SGFPRGVDSAQLSEYFLA-FGP-VASVVMDK--DKGV---FAIVEMGDVGAREAVLS-QS--QHSLGG 71 (94)
T ss_dssp CTTCCEEEE---ECCCTTCCHHHHHHHGGG-TSC-EEEEEECS--SSCC---EEEEEESSHHHHHHHHT-CS--CCEETT
T ss_pred cCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-eEEEEEcC--CCCc---EEEEEECCHHHHHHHHh-cC--CeEECC
Confidence 456689988 7887 999999999996 999 45664433 3344 99999999998888887 33 246899
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-++...+++
T Consensus 72 ~~l~V~~a~~~~ 83 (94)
T 2e5g_A 72 HRLRVRPREQKE 83 (94)
T ss_dssp EECCCBCSCCSC
T ss_pred EEEEEEECCcCC
Confidence 999887666553
No 73
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.33 E-value=1.1e-06 Score=68.03 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=61.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCe-eeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDC-VESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKF 263 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc-ve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf 263 (280)
.++-.|+|| ++.| +|+++|+++|.+ ||.. |.+|.+-.+..++++.+||+|.|.+.+....++. |. .-.+
T Consensus 6 ~~~m~tlfV---~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~-~~~~ 80 (95)
T 2lkz_A 6 HHHMDTIIL---RNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL-HPPL 80 (95)
T ss_dssp SCCCCEEEE---ESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS-SSCE
T ss_pred CCccCEEEE---eCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC-CCCc
Confidence 344568988 9988 999999999986 9963 5667665545678999999999999887776664 53 2468
Q ss_pred EEcCeeeEEE
Q 038800 264 RINGKHIWAR 273 (280)
Q Consensus 264 ~Ingk~iWar 273 (280)
.|+||.+-+.
T Consensus 81 ~i~Gr~i~V~ 90 (95)
T 2lkz_A 81 KIDGKTIGVD 90 (95)
T ss_dssp EETTEEEEEE
T ss_pred eECCEEEEEE
Confidence 9999999554
No 74
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=5.3e-07 Score=67.58 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=60.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+++|| +|.| ++++||+++|.+ ||+.|+.+.+.. ..||.|.|.+.+....++...+- +..|+
T Consensus 4 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g-~~~~~ 71 (93)
T 2cqh_A 4 GSSGMNKLYI---GNLSPAVTADDLRQLFGD-RKLPLAGQVLLK-------SGYAFVDYPDQNWAIRAIETLSG-KVELH 71 (93)
T ss_dssp CCCCCCCEEE---ECCCTTCCHHHHHHHHHH-TTCCCSSCEEEE-------TTEEEECCSCHHHHHHHHHHHTT-TCEET
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCCceEEEEEcC-------CCEEEEEECCHHHHHHHHHHccC-CeeEC
Confidence 4667799998 7877 999999999987 999777777732 46999999998877666542111 23689
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 72 g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 72 GKIMEVDYSVSKK 84 (93)
T ss_dssp TEECEEEECCCCC
T ss_pred CEEEEEEEccCcc
Confidence 9999888877764
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.32 E-value=1.2e-06 Score=65.14 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=61.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~ 264 (280)
+.+.+++|| +|.| ++++||+++|.+ ||. |+.+.+.. ..++...||+|.|.+.+....++ +|. .
T Consensus 5 ~~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~-v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~-----~ 72 (92)
T 2dgv_A 5 SSGACQIFV---RNLPFDFTWKMLKDKFNE-CGH-VLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGM-----K 72 (92)
T ss_dssp SSSCCEEEE---CSCCTTCCHHHHHHHHHT-TSC-EEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTC-----C
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCC-----E
Confidence 567789988 8888 999999999997 998 55666655 25788999999999988877765 453 3
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-++...|++
T Consensus 73 ~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 73 LSGREIDVRIDRNAS 87 (92)
T ss_dssp BTTBCCCCEECSCCS
T ss_pred ECCcEEEEEEcCCCC
Confidence 789988777666543
No 76
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=4e-06 Score=64.80 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=58.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
.+..+|+|| +|.| ++++||+++|.+ ||. |+.|.+-.+ ..++...||+|.|.+.+....++..-+. ..|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~-i~~~~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g 83 (114)
T 2do0_A 12 GRLGSTVFV---ANLDYKVGWKKLKEVFSM-AGV-VVRADILED-KDGKSRGIGTVTFEQSIEAVQAISMFNG--QLLFD 83 (114)
T ss_dssp CCCCSCEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEEEEC-TTCSEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEC-CCCCeeeEEEEEECCHHHHHHHHHHhCC--CEeCC
Confidence 455789998 6888 999999999996 998 555555552 3478889999999998887776542111 25799
Q ss_pred eeeEEEecc
Q 038800 268 KHIWARKYE 276 (280)
Q Consensus 268 k~iWarky~ 276 (280)
+.+-++...
T Consensus 84 ~~l~v~~a~ 92 (114)
T 2do0_A 84 RPMHVKMDE 92 (114)
T ss_dssp EECEEEECS
T ss_pred CEEEEEEcc
Confidence 999776554
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=2.3e-06 Score=66.19 Aligned_cols=84 Identities=13% Similarity=0.205 Sum_probs=64.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeee-------EEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCce
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVE-------SIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRI 260 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve-------~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~ 260 (280)
..+.+|+|| +|.| ++++||+++|.+ ||.+.. .|.+..+..+++...||+|.|.+.+....++..-+.
T Consensus 12 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 12 DSDNSAIYV---QGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCEEEE---ECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEE---cCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 456789998 7888 999999999997 998552 466655346788899999999999887777642111
Q ss_pred eEEEEcCeeeEEEecccCC
Q 038800 261 AKFRINGKHIWARKYERRD 279 (280)
Q Consensus 261 ~Kf~Ingk~iWarky~pk~ 279 (280)
..|+|+.+-++...|++
T Consensus 88 --~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 88 --KDFQGSKLKVSLARKKP 104 (113)
T ss_dssp --CEETTEECEEECSSCCC
T ss_pred --CccCCCEEEEEECCCCC
Confidence 15899999888777664
No 78
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.32 E-value=2.9e-06 Score=63.46 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=59.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+++|| +|.| ++++||+++|.+ ||. |+.|.+..+. .++...||.|.|.+.+....++...+. ..|+
T Consensus 12 ~~~~~~~l~v---~nlp~~~~~~~l~~~F~~-~G~-i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 83 (95)
T 2ywk_A 12 QEEADRTVFV---GNLEARVREEILYELFLQ-AGP-LTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNG--IRLY 83 (95)
T ss_dssp CTTGGGEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-EEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4567799998 6888 999999999987 998 6667776633 478889999999999888777652111 1488
Q ss_pred CeeeEEE
Q 038800 267 GKHIWAR 273 (280)
Q Consensus 267 gk~iWar 273 (280)
|+.+-++
T Consensus 84 g~~l~V~ 90 (95)
T 2ywk_A 84 GRPINVS 90 (95)
T ss_dssp TEECEEE
T ss_pred CCEEEEE
Confidence 9888664
No 79
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.31 E-value=2.8e-06 Score=64.80 Aligned_cols=79 Identities=14% Similarity=0.260 Sum_probs=61.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~ 264 (280)
+++.+++|| +|.| ++++||+++|.+ ||. |+.|.|..+ ..++...||+|.|.+.+....++ +|..
T Consensus 12 ~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~----- 80 (105)
T 2dnh_A 12 GGRDRKLFV---GMLNKQQSEEDVLRLFQP-FGV-IDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHALHGSQ----- 80 (105)
T ss_dssp CCCCCEEEE---ESCCTTCCHHHHHHHHTT-TSC-EEEEEEEEC-SSSCEEEEEEEEESSHHHHHHHHHHHSSCC-----
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEEC-CCCCcCcEEEEEeCCHHHHHHHHHHHcCCc-----
Confidence 456789998 7877 999999999996 999 677777663 36788899999999988877765 5543
Q ss_pred EcC---eeeEEEecccCC
Q 038800 265 ING---KHIWARKYERRD 279 (280)
Q Consensus 265 Ing---k~iWarky~pk~ 279 (280)
++| +.+-++...|++
T Consensus 81 ~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 81 TMPGASSSLVVKFADTDK 98 (105)
T ss_dssp CCTTCSSCCEEEESCSSC
T ss_pred cCCCCCccEEEEECccCc
Confidence 566 888777666554
No 80
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.30 E-value=1.9e-06 Score=71.24 Aligned_cols=82 Identities=21% Similarity=0.396 Sum_probs=63.8
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCe
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGK 268 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk 268 (280)
...+++|| +|.| ++++||+++|.+ ||. |+.|.+..+...++...||.|.|.+.+....+|... ...|+|+
T Consensus 102 ~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~---~~~~~G~ 173 (196)
T 1l3k_A 102 LTVKKIFV---GGIKEDTEEHHLRDYFEQ-YGK-IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK---YHTVNGH 173 (196)
T ss_dssp -CCSEEEE---ECCTTTCCHHHHHHHHTT-TSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCS---CCEETTE
T ss_pred CCcceEEE---eCCCCCCCHHHHHHHHhc-CCC-eEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhC---CcEECCE
Confidence 45589988 7888 999999999985 999 566666553567888999999999999988888642 3489999
Q ss_pred eeEEEecccCCC
Q 038800 269 HIWARKYERRDQ 280 (280)
Q Consensus 269 ~iWarky~pk~~ 280 (280)
.+-++...||.+
T Consensus 174 ~i~v~~a~~k~~ 185 (196)
T 1l3k_A 174 NCEVRKALSKQE 185 (196)
T ss_dssp ECEEEECC----
T ss_pred EEEEEecCChhH
Confidence 999999988753
No 81
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=1.7e-06 Score=67.41 Aligned_cols=83 Identities=12% Similarity=0.270 Sum_probs=63.1
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
....+.+++|| +|.| ++++||+++|.+ ||. |+.|.+-.+ .+...+||+|.|.+.+....++...+. ..|
T Consensus 24 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~--~~~~kg~afV~f~~~~~A~~Ai~~l~g--~~~ 94 (109)
T 2err_A 24 ENKSQPKRLHV---SNIPFRFRDPDLRQMFGQ-FGK-ILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHG--TVV 94 (109)
T ss_dssp SCTTCCCEEEE---ESCCTTCCHHHHHHHGGG-TCC-CSCEEECCB--TTBCTTEEEEECCCSHHHHHHHHHHTT--CEE
T ss_pred cCCCCCCEEEE---ECCCCcCCHHHHHHHHHh-cCC-EEEEEEEEC--CCCCceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 44667899998 7887 999999999986 999 556666552 245789999999998887777542111 148
Q ss_pred cCeeeEEEecccCC
Q 038800 266 NGKHIWARKYERRD 279 (280)
Q Consensus 266 ngk~iWarky~pk~ 279 (280)
+|+.+-++...||.
T Consensus 95 ~g~~l~V~~a~~~~ 108 (109)
T 2err_A 95 EGRKIEVNNATARV 108 (109)
T ss_dssp TTEECEEEECCCSC
T ss_pred CCEEEEEEECCCCc
Confidence 99999998887763
No 82
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.29 E-value=3e-06 Score=69.46 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=62.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
..++.+|+|| +|.| ++++||+++|.+ ||. |+.|.|-.+..+++...||+|.|.+.+....++..-+. ..|+
T Consensus 35 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~ 107 (156)
T 1h2v_Z 35 LLKKSCTLYV---GNLSFYTTEEQIYELFSK-SGD-IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING--TRLD 107 (156)
T ss_dssp TTTTCCEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT--SEET
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 4557789998 6888 999999999986 999 66777765456688889999999999888877753221 2579
Q ss_pred CeeeEEEecccC
Q 038800 267 GKHIWARKYERR 278 (280)
Q Consensus 267 gk~iWarky~pk 278 (280)
|+.+-++...|+
T Consensus 108 g~~l~V~~a~~~ 119 (156)
T 1h2v_Z 108 DRIIRTDWDAGF 119 (156)
T ss_dssp TEECEEEEESCC
T ss_pred CeEEEEEECCCC
Confidence 999855554443
No 83
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=3.7e-07 Score=72.46 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=64.5
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+++|| +|.| ++++||++||.. ||.+.+.+.|.+ ...++...||+|.|.+.+....+|. .+ ...|+
T Consensus 21 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~-~~~g~~~G~afV~F~~~~~a~~Al~-~~--g~~~~ 92 (124)
T 1wel_A 21 PHEAGFCVYL---KGLPFEAENKHVIDFFKK-LDIVEDSIYIAY-GPNGKATGEGFVEFRNEADYKAALC-RH--KQYMG 92 (124)
T ss_dssp CCCCCCEEEE---ECCCTTCCHHHHHHHSCS-SCBCTTTCEEEE-CTTSSEEEEEEEEBSSSHHHHHHHT-SC--SBCST
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCCccceEEEEE-CCCCCCCeEEEEEECCHHHHHHHHH-hC--CCeEC
Confidence 4567789988 8988 999999999986 998666455555 3578899999999999999888887 33 23689
Q ss_pred CeeeEEEecccC
Q 038800 267 GKHIWARKYERR 278 (280)
Q Consensus 267 gk~iWarky~pk 278 (280)
|+.|.+....++
T Consensus 93 gr~i~V~~a~~~ 104 (124)
T 1wel_A 93 NRFIQVHPITKK 104 (124)
T ss_dssp TSCBEEEEECHH
T ss_pred CcEEEEEECCHH
Confidence 999988765543
No 84
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.28 E-value=4.4e-06 Score=65.93 Aligned_cols=83 Identities=12% Similarity=0.235 Sum_probs=63.7
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
..++..+|+|| +|.| ++++||+++|.+ ||. |+.|.+..+. .++...||+|.|.+.+....++..-+. ..|
T Consensus 30 ~~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~ 101 (124)
T 2kt5_A 30 EGVETGAKLLV---SNLDFGVSDADIQELFAE-FGT-LKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG--VPL 101 (124)
T ss_dssp CCCSSCEEEEE---ESCCSSCCHHHHHHHHHT-TSC-CSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTT--EES
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 34567789988 7888 999999999997 998 5677776633 788899999999998887777652111 267
Q ss_pred cCeeeEEEecccC
Q 038800 266 NGKHIWARKYERR 278 (280)
Q Consensus 266 ngk~iWarky~pk 278 (280)
+|+.+-++.-.++
T Consensus 102 ~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 102 DGRPMDIQLVASQ 114 (124)
T ss_dssp SSCEEEEEEECCT
T ss_pred CCcEEEEEEeCCC
Confidence 9999977765544
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.26 E-value=1.7e-06 Score=62.16 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=54.3
Q ss_pred CCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCeeeEEEe
Q 038800 202 RGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGKHIWARK 274 (280)
Q Consensus 202 ~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk~iWark 274 (280)
+|.| ++++|++++|.+ ||. |+.+.+..+..+++...||.|.|.+.+..+.++. .+ ...|+|+.+-++.
T Consensus 5 ~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~--~~~~~g~~l~v~~ 74 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQ-FGK-VDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IH--FHEINNKMVECKK 74 (75)
T ss_dssp ECCCSSCCHHHHHHHHHT-TSC-CSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SS--CCCSSSCCCEEEC
T ss_pred ecCCCCCCHHHHHHHHHh-cCC-EEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CC--CCEECCEEEEEEe
Confidence 7888 999999999997 999 6667766544578899999999999999999886 22 2247888886653
No 86
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.26 E-value=1.6e-06 Score=69.97 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=66.5
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCee
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGKH 269 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk~ 269 (280)
..+++|| +|.| ++++||+++|.+ ||+ |+.+.+..+...+++.+||.|.|.+.+....++.- -...++|+.
T Consensus 86 ~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~~~~g~~ 157 (167)
T 2cjk_A 86 KTGKIFV---GGIGPDVRPKEFEEFFSQ-WGT-IIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN---KFIDFKDRK 157 (167)
T ss_dssp HCEEEEE---EEECTTCCHHHHHHHHHT-TSC-CSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHC---SEECSSSSC
T ss_pred CCCeEEE---CCCCCCCCHHHHHHHHHh-Ccc-EEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhC---CCEEeCCeE
Confidence 4578888 7777 999999999996 998 66776665346788999999999999999988872 356789999
Q ss_pred eEEEecccCC
Q 038800 270 IWARKYERRD 279 (280)
Q Consensus 270 iWarky~pk~ 279 (280)
+.++...||.
T Consensus 158 i~V~~a~pk~ 167 (167)
T 2cjk_A 158 IEIKRAEPRH 167 (167)
T ss_dssp EEEEECCCCC
T ss_pred EEEeecCCCC
Confidence 9999988874
No 87
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.26 E-value=4.5e-06 Score=63.26 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=58.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeE-------EEeeccCCCCCCCceEEEEEcchhhHHHHh---C
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVES-------IHMQENVPSNEQPLFARLVLQSVANVDQIL---S 256 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~-------v~m~~~~~~~~qplfarivf~s~~~v~~vL---~ 256 (280)
.+...+++|| +|.| ++++||+++|.+ ||...+. +.+-.+..+++..+||.|.|.+.+....++ +
T Consensus 9 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 9 SHSDNNTIFV---QGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp SCCCCSEEEE---ECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 4666789988 8888 999999999996 9985431 555443467888999999999988877665 4
Q ss_pred CCceeEEEEcCeeeEEEe
Q 038800 257 GRRIAKFRINGKHIWARK 274 (280)
Q Consensus 257 g~~~~Kf~Ingk~iWark 274 (280)
|. .++|+.+-++.
T Consensus 85 g~-----~~~g~~l~V~~ 97 (99)
T 2la6_A 85 GK-----EFSGNPIKVSF 97 (99)
T ss_dssp TC-----BSSSSBCEEEE
T ss_pred CC-----EeCCcEEEEEe
Confidence 54 47888876653
No 88
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.25 E-value=3.1e-06 Score=70.79 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=61.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcC--CeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYG--DCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG--dcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
.++.+++|| +|.| ++++||+++|.+ || ++++.-.+.+ ..+++..+||+|.|.+.+....++..-+. ..|
T Consensus 52 ~~~~~~lfV---gnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d-~~tg~skGfaFV~f~~~~~A~~Ai~~lng--~~~ 124 (156)
T 3n9u_C 52 RNRRAAVYV---GSFSWWTTDQQLIQVIRS-IGVYDVVELKFAEN-RANGQSKGYAEVVVASENSVHKLLELLPG--KVL 124 (156)
T ss_dssp ----CEEEE---ECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEEC-TTTCCEEEEEEEEESCHHHHHHHHHHSTT--CEE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-HCCccEEEEEEEec-CCCCccceEEEEEECCHHHHHHHHHHcCC--CEE
Confidence 457789988 7988 999999999975 99 7444444444 56789999999999999888877653111 268
Q ss_pred cCeeeEEEecccC
Q 038800 266 NGKHIWARKYERR 278 (280)
Q Consensus 266 ngk~iWarky~pk 278 (280)
+|+.+-++...|+
T Consensus 125 ~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 125 NGEKVDVRPATRQ 137 (156)
T ss_dssp TTEECEEEECCHH
T ss_pred CCeEeEEEEcCCC
Confidence 9999998877664
No 89
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.25 E-value=4.2e-06 Score=65.73 Aligned_cols=77 Identities=10% Similarity=0.370 Sum_probs=59.0
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEEEE
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKFRI 265 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf~I 265 (280)
....++|| +|.| ++++||+++|.+ ||. |++|.+-.+ .+....||+|.|.+.+....++. |. .|
T Consensus 3 ~~~~~lfV---~nLp~~~te~~L~~~F~~-~G~-v~~v~i~~d--~~~~kg~afV~f~~~~~A~~Ai~~l~~~-----~~ 70 (115)
T 4f25_A 3 LGSGNIFI---KNLDKSIDNKALYDTFSA-FGN-ILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGM-----LL 70 (115)
T ss_dssp --CCEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEEE--TTEEEEEEEEEESCHHHHHHHHHHHTTC-----EE
T ss_pred CCCCEEEE---CCCCCCCCHHHHHHHHhc-cCC-EEEEEEeec--CCCCCceEEEEECCHHHHHHHHHHcCCC-----EE
Confidence 34457887 8988 999999999986 998 555555442 24467899999999888877764 42 68
Q ss_pred cCeeeEEEecccCC
Q 038800 266 NGKHIWARKYERRD 279 (280)
Q Consensus 266 ngk~iWarky~pk~ 279 (280)
+|+.+-+..+.|++
T Consensus 71 ~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 71 NDRKVFVGRFKSRK 84 (115)
T ss_dssp TTEECEEEESSCCC
T ss_pred CCEEEEEEECCCcc
Confidence 99999998887764
No 90
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.25 E-value=2.1e-06 Score=64.70 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=63.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.++..+++|| +|.| ++++||+++|.+ ||.+.+...+.+ ...++...||.|.|.+.+....++...+. ..|+
T Consensus 11 ~~~~~~~l~v---~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~~~ 83 (98)
T 2cqp_A 11 GKPGPTIIKV---QNMPFTVSIDEILDFFYG-YQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDLND--RPIG 83 (98)
T ss_dssp CCCSSEEEEE---ESCCTTCCHHHHHHHTTT-SCCCTTTCEEEE-CSSSCEEEEEEEEESCHHHHHHHHHHTTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCCccceEEEEE-CCCCCeeeEEEEEECCHHHHHHHHHHhCC--CeeC
Confidence 3456688888 7888 999999999986 998665555555 46788899999999999988887753221 1689
Q ss_pred CeeeEEEecccC
Q 038800 267 GKHIWARKYERR 278 (280)
Q Consensus 267 gk~iWarky~pk 278 (280)
|+.+-++.-.++
T Consensus 84 g~~l~V~~a~~~ 95 (98)
T 2cqp_A 84 SRKVKLVLGSGP 95 (98)
T ss_dssp TEECEEEESSCS
T ss_pred CeEEEEEEcCCC
Confidence 999988765543
No 91
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.25 E-value=8.3e-07 Score=68.17 Aligned_cols=78 Identities=17% Similarity=0.368 Sum_probs=61.1
Q ss_pred CCceEEEEccCCCcC--------CHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHH---hCCCce
Q 038800 192 DDRTMFLTFSRGFPV--------TRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQI---LSGRRI 260 (280)
Q Consensus 192 d~Rt~FvTFS~G~Pv--------se~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~v---L~g~~~ 260 (280)
.++|+|| +|.|. ++++|+++|.+ ||. |++|.|-.+..+++..+||+|.|.+.+....+ |+|.
T Consensus 5 ~~~~vfV---~nLp~v~~~~~~~~~~~L~~~F~~-~G~-i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-- 77 (100)
T 3ns6_A 5 SDQYIVV---NGAPVIPSAKVPVLKKALTSLFSK-AGK-VVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK-- 77 (100)
T ss_dssp GGGEEEE---ESCCCCBGGGHHHHHHHHHHHHHT-TSC-EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC--
T ss_pred cCcEEEE---eCCCcCChHHHHHHHHHHHHHHHh-cCC-EeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc--
Confidence 3688988 78775 78999999996 998 55666655356789999999999997776655 4564
Q ss_pred eEEEEcC-eeeEEEecccCC
Q 038800 261 AKFRING-KHIWARKYERRD 279 (280)
Q Consensus 261 ~Kf~Ing-k~iWarky~pk~ 279 (280)
.|+| +.+-++...|++
T Consensus 78 ---~~~g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 78 ---RLDLKHRLFLYTMKDVE 94 (100)
T ss_dssp ---BSSSSCBCEEEESHHHH
T ss_pred ---ccCCCeEEEEEECchhh
Confidence 4788 999988887764
No 92
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=7.5e-06 Score=60.97 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=59.7
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.+.+-+ .||.|.|.+.+....++...+. ..++
T Consensus 5 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g--~~~~ 69 (90)
T 2dnp_A 5 SSGNTWKIFV---GNVSAACTSQELRSLFER-RGR-VIECDVVK--------DYAFVHMEKEADAKAAIAQLNG--KEVK 69 (90)
T ss_dssp SSCCSCCEEE---ESCCTTCCHHHHHHHHHH-HSC-EEEEEECS--------SCEEEEESCHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHc-CCC-EEEEEEEC--------CEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 3567789998 7877 999999999997 999 77888754 1999999999887776542111 2589
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 70 g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 70 GKRINVELSTKGQ 82 (90)
T ss_dssp TEECEEEESCCCC
T ss_pred CcEEEEEECCCCC
Confidence 9999888877664
No 93
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.24 E-value=3.4e-06 Score=65.46 Aligned_cols=77 Identities=21% Similarity=0.459 Sum_probs=60.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
.|+..+|+|| +|.| ++++||+++|.+ ||. |++|.+-.+ ++..+||.|.|.+.+....++ +|.
T Consensus 4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~----- 70 (115)
T 3lqv_A 4 PPEVNRILYI---RNLPYKITAEEMYDIFGK-YGP-IRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGF----- 70 (115)
T ss_dssp CTTCCSEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCC-----
Confidence 4667789998 7888 999999999996 999 566766542 455899999999988877664 464
Q ss_pred EEcCeeeEEEecccC
Q 038800 264 RINGKHIWARKYERR 278 (280)
Q Consensus 264 ~Ingk~iWarky~pk 278 (280)
.++|+.+-+..+.|+
T Consensus 71 ~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 71 NVSNRYLVVLYYNAN 85 (115)
T ss_dssp BSSSCBCEEEECCHH
T ss_pred EECCeEEEEEEecCC
Confidence 368999988877654
No 94
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=3.3e-06 Score=64.07 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=62.3
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+++|| +|.| ++++||+++|.+ ||++ .+-. ...++...||+|.|.+.+....++...+ ...|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~v----~~~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~--g~~~~ 79 (101)
T 2fc9_A 11 WSGESKTLVL---SNLSYSATEETLQEVFEK-ATFI----KVPQ-NQNGKSKGYAFIEFASFEDAKEALNSCN--KREIE 79 (101)
T ss_dssp CSCCCSEEEE---ESCCTTCCHHHHHHHCSS-CSEE----ECCB-CSSSCBCSEEEEECSSHHHHHHHHHHTS--SEEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-CCEE----EEEE-CCCCCEeeEEEEEECCHHHHHHHHHHhC--CCEeC
Confidence 4567899999 6888 999999999997 9975 2323 2457888999999999998888765322 14689
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 80 g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 80 GRAIRLELQGPRG 92 (101)
T ss_dssp TEEEEEEECSSCC
T ss_pred CeEEEEEEcCCCC
Confidence 9999888877765
No 95
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=3.3e-06 Score=62.92 Aligned_cols=77 Identities=16% Similarity=0.383 Sum_probs=60.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+|+|| +|.| ++++||+++|.+ ||. |+.|.|. ..||.|.|.+.+....++...+. ..|+
T Consensus 4 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g--~~~~ 68 (90)
T 2dnq_A 4 GSSGMVKLFI---GNLPREATEQEIRSLFEQ-YGK-VLECDII--------KNYGFVHIEDKTAAEDAIRNLHH--YKLH 68 (90)
T ss_dssp CSSCCEEEEE---ESCCSSCCHHHHHHHHHT-SSC-EEEEEEE--------TTEEEEEESSHHHHHHHHHHHTT--CBCS
T ss_pred CCCCCeEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEE--------CCEEEEEECCHHHHHHHHHHhcC--CccC
Confidence 4677899998 6888 999999999997 998 6777774 35999999998887776642111 2489
Q ss_pred CeeeEEEecccCCC
Q 038800 267 GKHIWARKYERRDQ 280 (280)
Q Consensus 267 gk~iWarky~pk~~ 280 (280)
|+.+-++...|+++
T Consensus 69 g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 69 GVNINVEASKNKSK 82 (90)
T ss_dssp SCBCEEECSSCCCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999888877653
No 96
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.22 E-value=4.4e-07 Score=68.99 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=63.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+++|| +|.| ++++||+++|.+ ||.... ..|.+ ...++...||+|.|.+.+....++. .+ ...|+
T Consensus 13 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~-~~~g~~~g~afV~f~~~~~a~~A~~-l~--g~~~~ 83 (101)
T 1fj7_A 13 ESTTPFNLFI---GNLNPNKSVAELKVAISE-LFAKND-LAVVD-VRTGTNRKFGYVDFESAEDLEKALE-LT--GLKVF 83 (101)
T ss_dssp TCSCSEEEEE---ECCCTTSCHHHHHHHHHH-HHHHHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHHH-GG--GCCBT
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCcce-EEEec-CCCCCcCcEEEEEECCHHHHHHHHh-cC--CcEEC
Confidence 3556789988 7888 999999999997 998655 44444 3467889999999999888776664 22 23478
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 84 g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 84 GNEIKLEKPKGRD 96 (101)
T ss_dssp TBCCEEECCSCCC
T ss_pred CcEEEEEEcCCCC
Confidence 9999888877765
No 97
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.21 E-value=5.7e-06 Score=66.11 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=57.6
Q ss_pred ceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEEEcCe
Q 038800 194 RTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFRINGK 268 (280)
Q Consensus 194 Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~Ingk 268 (280)
||+|| +|.| ++++||+++|.+ ||+ |++|.+-. ...++...||.|.|.+.+....++ +|. .++|+
T Consensus 1 R~l~V---~nlp~~~t~~~l~~~f~~-~G~-i~~v~i~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~~~-----~~~g~ 69 (166)
T 3md3_A 1 RVLYV---GNLDKAITEDILKQYFQV-GGP-IANIKIMI-DKNNKNVNYAFVEYHQSHDANIALQTLNGK-----QIENN 69 (166)
T ss_dssp CEEEE---EEEETTCCHHHHHHHHGG-GSC-EEEEEEEC-CCC-CCEEEEEEEESSHHHHHHHHHHHTTC-----EETTE
T ss_pred CEEEE---CCCCCcCCHHHHHHHHHh-cCC-eEEEEEEE-CCCCCCCCEEEEEeCCHHHHHHHHHHcCCC-----ccCCC
Confidence 78888 7888 999999999996 998 56666655 234778899999999998887777 453 57899
Q ss_pred eeEEEecccC
Q 038800 269 HIWARKYERR 278 (280)
Q Consensus 269 ~iWarky~pk 278 (280)
.+-++...++
T Consensus 70 ~i~v~~~~~~ 79 (166)
T 3md3_A 70 IVKINWAFQS 79 (166)
T ss_dssp ECEEEECCCC
T ss_pred eeEEEEcCCC
Confidence 8877766544
No 98
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=6.6e-06 Score=61.52 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=59.5
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+++|| +|.| ++++||+++|.+ ||+ |+.|.+-+ + ||.|.|.+.+....++..-+. ..|+
T Consensus 6 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-v~~v~~~~----~----~afV~f~~~~~a~~A~~~l~g--~~~~ 70 (92)
T 2dgt_A 6 SGKASTKLHV---GNISPTCTNQELRAKFEE-YGP-VIECDIVK----D----YAFVHMERAEDAVEAIRGLDN--TEFQ 70 (92)
T ss_dssp CCCSSEEEEE---ESCCSSCCHHHHHHHHHT-TSC-CCEEEECS----S----EEEEEESCHHHHHHHHHHHTT--EEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEC----C----EEEEEECCHHHHHHHHHHhCC--CeeC
Confidence 3567789998 7887 999999999997 998 67777754 1 999999998887776642111 2589
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 71 g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 71 GKRMHVQLSTSRL 83 (92)
T ss_dssp TEEEEEEESSCCC
T ss_pred CcEEEEEEccCCC
Confidence 9999998887765
No 99
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.20 E-value=1.9e-06 Score=74.20 Aligned_cols=73 Identities=19% Similarity=0.365 Sum_probs=60.2
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCee
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGKH 269 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk~ 269 (280)
+.||+|| +|.| +++++|+++|.+ ||. |..|.|-.+ ..++..+||+|.|.+.+....++..... .++|+.
T Consensus 108 ~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~-v~~v~i~~~-~~~~~kG~aFVeF~~~e~A~~A~~~~~~---~~~Gr~ 178 (193)
T 2voo_A 108 KNRSVYI---KGFPTDATLDDIKEWLED-KGQ-VLNIQMRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQ---KYKETD 178 (193)
T ss_dssp HHTEEEE---ECCCTTCCHHHHHHHHTT-SCC-EEEEEEEEC-TTCCEEEEEEEEESSHHHHHHHHHCTTC---EETTEE
T ss_pred ccCEEEe---cCCCCcCCHHHHHHHHhc-CCC-EEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHhCCC---eECCEE
Confidence 4589988 8888 999999999996 999 777877763 4588899999999999999999875432 799998
Q ss_pred eEEE
Q 038800 270 IWAR 273 (280)
Q Consensus 270 iWar 273 (280)
+-++
T Consensus 179 l~V~ 182 (193)
T 2voo_A 179 LLIL 182 (193)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8443
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=3.3e-06 Score=62.02 Aligned_cols=62 Identities=16% Similarity=0.313 Sum_probs=51.1
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS 256 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~ 256 (280)
+.+.+++|| +|.| ++++||+++|.+ ||. |+++.|..+..+++...||.|.|.+.+....++.
T Consensus 2 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 2 SSGSSGLYI---RGLQPGTTDQDLVKLCQP-YGK-IVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CCCCCEEEE---ESCCTTCCHHHHHTTSTT-TSC-EEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 456789998 7888 999999999996 998 6667665545678899999999999888777665
No 101
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.19 E-value=2.9e-06 Score=67.23 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=62.2
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCe--eeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDC--VESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc--ve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
+.+.+|+|| +|.| ++++||++||.. ||.. |+.|.|-.+.. ++...||+|.|.+.+....+|. .+. ..|
T Consensus 14 ~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g--~~~ 85 (118)
T 2db1_A 14 GGEGYVVKL---RGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDR--ESM 85 (118)
T ss_dssp BCCCCEEEE---ESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTT--EEE
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC--CeE
Confidence 456788888 7988 999999999997 9962 56666655333 8889999999999999999887 332 468
Q ss_pred cCeeeEEEecc
Q 038800 266 NGKHIWARKYE 276 (280)
Q Consensus 266 ngk~iWarky~ 276 (280)
+|+.|-+..-.
T Consensus 86 ~gr~i~V~~a~ 96 (118)
T 2db1_A 86 GHRYIEVFKSH 96 (118)
T ss_dssp TTEEEEEEEEC
T ss_pred CCeEEEEEECC
Confidence 99988776543
No 102
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.19 E-value=6.6e-06 Score=70.57 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+...+|||| +|.| ++|+||+++|.+ ||+ |++|.+-.+..+++..+||+|.|.+.+....++...+. ..++|
T Consensus 12 ~~p~~tlfV---gnLp~~~te~~L~~~F~~-~G~-I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~--~~~~g 84 (213)
T 4f02_A 12 SYPMASLYV---GDLHPDVTEAMLYEKFSP-AGP-ILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF--DVIKG 84 (213)
T ss_dssp ---CCEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-hCC-EEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh--hhcCC
Confidence 445689998 8988 999999999986 999 45554443356789999999999999888877642110 15788
Q ss_pred eeeEEEeccc
Q 038800 268 KHIWARKYER 277 (280)
Q Consensus 268 k~iWarky~p 277 (280)
|.+.+....+
T Consensus 85 ~~i~~~~~~~ 94 (213)
T 4f02_A 85 KPVRIMWSQR 94 (213)
T ss_dssp EECEEEECCC
T ss_pred cccccccccc
Confidence 8887665443
No 103
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.19 E-value=9.2e-07 Score=66.26 Aligned_cols=75 Identities=15% Similarity=0.301 Sum_probs=54.6
Q ss_pred eEEEEccCCCc--CCHHHHHHHHHhhcC--CeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEEEcC
Q 038800 195 TMFLTFSRGFP--VTRDEVKELFTRMYG--DCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFRING 267 (280)
Q Consensus 195 t~FvTFS~G~P--vse~ei~~fF~~~yG--dcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~Ing 267 (280)
|+|| +|.| ++++||+++|.+ || ++.+.-.+.+ ..+++..+||+|.|.+.+....++ +|. .++|
T Consensus 3 ~l~V---~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~-~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~-----~~~g 72 (90)
T 3p5t_L 3 ALYI---GNLTWWTTDEDLTEAVHS-LGVNDILEIKFFEN-RANGQSKGFALVGVGSEASSKKLMDLLPKR-----ELHG 72 (90)
T ss_dssp -CEE---ESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEEC-TTTCCEEEEEEECC-CHHHHHHHHHHGGGS-----CSSS
T ss_pred EEEE---eCCCCCCCHHHHHHHHHH-hCCCceEEEEEEec-CCCCccCcEEEEEECCHHHHHHHHHHcCCC-----eeCC
Confidence 5666 7877 999999999986 99 7444444444 567899999999999988877665 454 4899
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-++...|+.
T Consensus 73 r~i~V~~~~~~~ 84 (90)
T 3p5t_L 73 QNPVVTPSNKLE 84 (90)
T ss_dssp CCCEECCC----
T ss_pred EEEEEEECCCCc
Confidence 999988887764
No 104
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=7.9e-06 Score=61.77 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=60.2
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
.++..+++|| +|.| ++++||+++|.+ ||.+...+.. ++...||.|.|.+.+....++ +|.
T Consensus 15 ~~~~~~~l~V---~nL~~~~t~~~l~~~F~~-~G~v~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~----- 79 (97)
T 2e5j_A 15 GAPLAADVYV---GNLPRDARVSDLKRALRE-LGSVPLRLTW------QGPRRRAFLHYPDSAAAQQAVSCLQGL----- 79 (97)
T ss_dssp SSCCCCEEEE---ECCCTTCCHHHHHHHHHH-TTCCCSEEEE------ETTTTEEEEECSSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---eCCCCcCcHHHHHHHHHh-cCCEEEEEEc------CCCCcEEEEEECCHHHHHHHHHHhCCC-----
Confidence 4566789998 7887 999999999996 9986433332 356789999999988777665 564
Q ss_pred EEcCeeeEEEecccCCC
Q 038800 264 RINGKHIWARKYERRDQ 280 (280)
Q Consensus 264 ~Ingk~iWarky~pk~~ 280 (280)
.|+|+.+-++...|+++
T Consensus 80 ~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 80 RLGTDTLRVALARQQRD 96 (97)
T ss_dssp CSSSSCCEEEECCCCCC
T ss_pred EECCcEEEEEEcCCCCC
Confidence 47999999998888764
No 105
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.17 E-value=8.1e-07 Score=71.27 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=61.9
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeE-EEeeccCCCCCCCceEEEEEcchhhHHHH---hCCCceeEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVES-IHMQENVPSNEQPLFARLVLQSVANVDQI---LSGRRIAKF 263 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~-v~m~~~~~~~~qplfarivf~s~~~v~~v---L~g~~~~Kf 263 (280)
.+..+++|| +|.| ++++||+++|.+ ||.+.+. |.+-.+..+++..+||+|.|.+. ..... |+|. ...+
T Consensus 20 ~~~~~~lfV---~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~-~~~~ 93 (131)
T 2m2b_A 20 ENANDTIIL---RNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL-HPPL 93 (131)
T ss_dssp SCCCCEEEE---CSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC-CCSC
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC-CCCc
Confidence 456789988 8988 999999999986 9985441 44433345789999999999998 54444 4564 1345
Q ss_pred EEcCeeeEEEecccCC
Q 038800 264 RINGKHIWARKYERRD 279 (280)
Q Consensus 264 ~Ingk~iWarky~pk~ 279 (280)
.|+||.+-++...|++
T Consensus 94 ~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSK 109 (131)
T ss_dssp CGGGCCCCCEECCCSC
T ss_pred cCCCEEEEEEECCCCC
Confidence 6899998877776664
No 106
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=7.9e-06 Score=63.22 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=60.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCe---eeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDC---VESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc---ve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~ 264 (280)
++..+++|| +|.| ++++||+++|.+ ||.+ +..+.+. +++...||+|.|.+.+....++..-+. ..
T Consensus 22 ~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g--~~ 91 (115)
T 2cpx_A 22 GEPNKVLYL---KNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNG--YK 91 (115)
T ss_dssp CSCCSEEEE---ECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTT--CB
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCC--CE
Confidence 456789998 7888 999999999997 9963 2344443 478889999999998887777642121 23
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-++...|++
T Consensus 92 ~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 92 LYGKILVIEFGKNKK 106 (115)
T ss_dssp CSSCBCEEEECCCCS
T ss_pred eCCcEEEEEEccCCC
Confidence 699999888877664
No 107
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=2.9e-06 Score=66.39 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=59.1
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCe
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGK 268 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk 268 (280)
+..+++|| ++.| ++|+|++++|.+ ||. |+.|.|-. ...||+|.|.+.+....++...+.-...|+||
T Consensus 13 ~p~~~l~V---~nLp~~~te~~L~~~F~~-fG~-v~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 13 APSRVLHI---RKLPGEVTETEVIALGLP-FGK-VTNILMLK------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp SCCSEEEE---ESCCTTCCHHHHHHTTTT-TSC-EEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 34589988 7887 999999999997 999 45666644 16899999999888777765322223579999
Q ss_pred eeEEEecccCC
Q 038800 269 HIWARKYERRD 279 (280)
Q Consensus 269 ~iWarky~pk~ 279 (280)
.+.+....+++
T Consensus 82 ~l~V~~a~~~~ 92 (101)
T 2cq1_A 82 PIYIQYSNHKE 92 (101)
T ss_dssp ECEEEECSCSS
T ss_pred EEEEEEcCccc
Confidence 99887766654
No 108
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.16 E-value=1.1e-05 Score=61.62 Aligned_cols=77 Identities=13% Similarity=0.255 Sum_probs=58.2
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.++..+++|| +|.| ++++||+++|.. ||. |+.|.+-.+. .++...||.|.|.+.+....++..-+. ..|+
T Consensus 25 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 96 (107)
T 3ulh_A 25 GVETGGKLLV---SNLDFGVSDADIQELFAE-FGT-LKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNG--VPLD 96 (107)
T ss_dssp CCCCSEEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCC--CEeC
Confidence 4566789988 6877 999999999996 999 4666665533 788889999999998887776552111 1579
Q ss_pred CeeeEEE
Q 038800 267 GKHIWAR 273 (280)
Q Consensus 267 gk~iWar 273 (280)
|+.+-++
T Consensus 97 g~~l~V~ 103 (107)
T 3ulh_A 97 GRPMNIQ 103 (107)
T ss_dssp TEECEEE
T ss_pred CcEEEEE
Confidence 9988665
No 109
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.15 E-value=5.8e-06 Score=68.73 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=61.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
..+.+|||| +|.| +++++|+++|.+ ||. |+.|.|..+..++....||+|.|.+.+....++...+. ..|+|
T Consensus 69 ~~~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g--~~~~g 141 (165)
T 1rk8_A 69 SVEGWILFV---TSIHEEAQEDEIQEKFCD-YGE-IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG--AEIMG 141 (165)
T ss_dssp CC-CEEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT--CEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHhhc-CCC-EEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC--CEECC
Confidence 445688988 6888 999999999986 999 56666655356788899999999998887766542111 25799
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-+....|+.
T Consensus 142 ~~l~V~~a~~~~ 153 (165)
T 1rk8_A 142 QTIQVDWCFVKG 153 (165)
T ss_dssp EECEEEESEECC
T ss_pred EEEEEEEecCCC
Confidence 999776665543
No 110
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.15 E-value=9.9e-06 Score=61.89 Aligned_cols=75 Identities=15% Similarity=0.258 Sum_probs=58.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
....+++|| +|.| ++++||+++|.+ ||. |+.|.+-+ .||+|.|.+.+....++..-+. ..|+|
T Consensus 8 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~-i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g--~~~~g 72 (103)
T 2dgu_A 8 MAKVKVLFV---RNLANTVTEEILEKAFSQ-FGK-LERVKKLK--------DYAFIHFDERDGAVKAMEEMNG--KDLEG 72 (103)
T ss_dssp CCCCCCEEE---ECCCTTCCHHHHHHHHHH-HSC-EEEEEECS--------SCEEEEESSHHHHHHHHHHHTT--EEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCC--CccCC
Confidence 445689998 7887 999999999997 999 56676643 2999999998887777652111 25899
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-++...|++
T Consensus 73 ~~l~v~~a~~~~ 84 (103)
T 2dgu_A 73 ENIEIVFAKPPD 84 (103)
T ss_dssp EEEEEEECCCCC
T ss_pred CEEEEEEcCCCc
Confidence 999988887764
No 111
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.14 E-value=1.1e-05 Score=64.53 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=60.4
Q ss_pred CceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEEEEcC
Q 038800 193 DRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKFRING 267 (280)
Q Consensus 193 ~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf~Ing 267 (280)
.||+|| +|.| ++++||+++|.+ ||+ |+++.+-.+...+++.+||.|.|.+.+....++. |. .++|
T Consensus 2 ~~~l~v---~nlp~~~~~~~l~~~f~~-~G~-i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-----~~~g 71 (167)
T 1fxl_A 2 KTNLIV---NYLPQNMTQEEFRSLFGS-IGE-IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL-----RLQT 71 (167)
T ss_dssp CSEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----EETT
T ss_pred cceEEE---cCCCCCCCHHHHHHHHHh-cCC-eEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC-----ccCC
Confidence 478888 7888 999999999996 998 6666665534578889999999999988887764 52 5789
Q ss_pred eeeEEEecccC
Q 038800 268 KHIWARKYERR 278 (280)
Q Consensus 268 k~iWarky~pk 278 (280)
+.+-++...|+
T Consensus 72 ~~l~v~~~~~~ 82 (167)
T 1fxl_A 72 KTIKVSYARPS 82 (167)
T ss_dssp EECEEEECCCC
T ss_pred ceEEEEecCCC
Confidence 99877765554
No 112
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=2.9e-06 Score=68.81 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=62.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCe---eeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDC---VESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc---ve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~ 264 (280)
.++.+++|| +|.| ++++||++||.. ||.+ |++|.|-.+ ..+++..||+|.|.+.+....+|.- +. -.
T Consensus 20 ~~~~~~v~V---~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~--~~ 91 (123)
T 2dha_A 20 KENQVIVRM---RGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HK--DL 91 (123)
T ss_dssp CCSCCEEEE---CSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TT--EE
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CC--Ce
Confidence 456678887 8988 999999999997 9975 577777663 5789999999999999999998874 22 36
Q ss_pred EcCeeeEEEecc
Q 038800 265 INGKHIWARKYE 276 (280)
Q Consensus 265 Ingk~iWarky~ 276 (280)
|+|+.|-+.+-.
T Consensus 92 l~gR~i~V~~a~ 103 (123)
T 2dha_A 92 LGKRYIELFRST 103 (123)
T ss_dssp SSSCEECCEEEC
T ss_pred eCCeEEEEEECC
Confidence 788877655443
No 113
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=4.2e-06 Score=66.67 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=57.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+++|| +|.| ++|+||+++|.+ ||. |..|.|-. ...||+|.|.+.+.....+.....-...|+
T Consensus 12 ~~~~~~~LfV---~nLp~~vte~dL~~lF~~-fG~-V~~v~i~~------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 12 SGVPSRVIHI---RKLPIDVTEGEVISLGLP-FGK-VTNLLMLK------GKNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCCCCEEEE---CSCCTTSCHHHHHHHHHH-HCC-EEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEc------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 4667789998 8988 999999999997 999 56666644 158999999987766555541111123689
Q ss_pred CeeeEEEecccC
Q 038800 267 GKHIWARKYERR 278 (280)
Q Consensus 267 gk~iWarky~pk 278 (280)
||.+.+..-.+|
T Consensus 81 Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 81 GQPIYIQFSNHK 92 (105)
T ss_dssp TEECCBCCCSSS
T ss_pred CEEEEEEEcCCC
Confidence 999876655444
No 114
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.13 E-value=8e-06 Score=67.60 Aligned_cols=82 Identities=18% Similarity=0.413 Sum_probs=66.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
.+...+++|| +|.| ++++||+++|.+ ||+ |+.|.+..+...+++..||.|.|.+.+....++ +|.
T Consensus 110 ~~~~~~~l~v---~nl~~~~~~~~l~~~f~~-~G~-v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~----- 179 (198)
T 2yh0_A 110 VPDSAHKLFI---GGLPNYLNDDQVKELLTS-FGP-LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM----- 179 (198)
T ss_dssp SSCCCCEEEE---ECCCTTCCHHHHHHHHHT-BSC-EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCC-ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-----
Confidence 4567789988 6887 999999999996 999 566666653457888999999999988777665 452
Q ss_pred EEcCeeeEEEecccCCC
Q 038800 264 RINGKHIWARKYERRDQ 280 (280)
Q Consensus 264 ~Ingk~iWarky~pk~~ 280 (280)
.|+|+.+-++...|+.+
T Consensus 180 ~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 180 QLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EETTEECEEEESCCCCC
T ss_pred EECCEEEEEEECCCCCC
Confidence 57999999998888764
No 115
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.13 E-value=1.1e-05 Score=60.99 Aligned_cols=75 Identities=17% Similarity=0.375 Sum_probs=60.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
...+.+++|| +|.| ++++||+++|.+ ||. |+.|.+.+ ...||.|.|.+.+....++ +|..
T Consensus 11 ~~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~v~~~~------~kg~afV~f~~~~~a~~a~~~l~g~~---- 75 (99)
T 2cpj_A 11 TFTQRSRLFV---GNLPPDITEEEMRKLFEK-YGK-AGEVFIHK------DKGFGFIRLETRTLAEIAKVELDNMP---- 75 (99)
T ss_dssp CCCCTTEEEE---ESCCTTCCHHHHHHHTST-TCC-CSEEEEET------TTTEEEEECSSSHHHHHHHHHHTTCC----
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHhh-cCC-eEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCE----
Confidence 4567799999 7877 999999999996 998 67777755 2579999999988877765 5543
Q ss_pred EEcCeeeEEEecccCC
Q 038800 264 RINGKHIWARKYERRD 279 (280)
Q Consensus 264 ~Ingk~iWarky~pk~ 279 (280)
|+|+.+-++...|++
T Consensus 76 -~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 76 -LRGKQLRVRFACHSA 90 (99)
T ss_dssp -BTTBCCEEEESSCCS
T ss_pred -eCCceEEEEEcCCCC
Confidence 799999888777664
No 116
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.12 E-value=3.2e-06 Score=66.40 Aligned_cols=77 Identities=12% Similarity=0.185 Sum_probs=57.8
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCee
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGKH 269 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk~ 269 (280)
..+++|| ++.| ++|+|++++|.+ ||. |+.|.|-. ...||+|.|.+.+....++...+..+..|+||.
T Consensus 14 p~~~l~V---~nLp~~~te~~L~~~F~~-fG~-V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 14 VSPVVHV---RGLCESVVEADLVEALEK-FGT-ICYVMMMP------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCSEEEE---ESCCSSCCHHHHHHHHTT-TSC-EEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEEC------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 4589998 7888 999999999996 998 55676644 257999999998877776653222235689999
Q ss_pred eEEEecccCC
Q 038800 270 IWARKYERRD 279 (280)
Q Consensus 270 iWarky~pk~ 279 (280)
+.+....+++
T Consensus 83 l~V~~a~~~~ 92 (104)
T 1wex_A 83 AFFNYSTSKR 92 (104)
T ss_dssp CEEEECSSSS
T ss_pred EEEEEccCcc
Confidence 9887665543
No 117
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.12 E-value=2.2e-06 Score=66.43 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=62.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCe--eeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDC--VESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFR 264 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc--ve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~ 264 (280)
.+.+.+++|| +|.| +|++||++||.. ||.. |+.|.+-.+.. ++..+||+|.|.+.+....+|. .+. ..
T Consensus 7 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~--~~ 78 (107)
T 2lmi_A 7 EVDDVFLIRA---QGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHR--MY 78 (107)
T ss_dssp CCSSCCEEEE---ECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTT--CC
T ss_pred CCCCccEEEE---eCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCc--ce
Confidence 3456778887 8988 999999999996 8864 66777765334 8999999999999999888887 322 24
Q ss_pred EcCeeeEEEecccC
Q 038800 265 INGKHIWARKYERR 278 (280)
Q Consensus 265 Ingk~iWarky~pk 278 (280)
|+|+.+-+....|+
T Consensus 79 ~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 79 MGQRYVEVYEINNE 92 (107)
T ss_dssp SSSSCCCCEECCHH
T ss_pred eCCeEEEEEECCHH
Confidence 78888877665543
No 118
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.12 E-value=4.9e-06 Score=68.55 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCe--eeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDC--VESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRI 265 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc--ve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~I 265 (280)
+++.+++|| +|.| +|++||++||.+ ||.. |++|.+-.+.. ++..+||+|.|.+.+....+|. .+. ..|
T Consensus 41 ~~~~~~lfV---gnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g--~~l 112 (136)
T 2hgl_A 41 GGEGFVVKL---RGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDR--ESM 112 (136)
T ss_dssp CCTTCEEEE---ESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTE--EES
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC--CEE
Confidence 456778887 8988 999999999997 9985 66666655334 8899999999999999999887 443 468
Q ss_pred cCeeeEEEeccc
Q 038800 266 NGKHIWARKYER 277 (280)
Q Consensus 266 ngk~iWarky~p 277 (280)
+|+.|=+..-.|
T Consensus 113 ~gr~i~V~~a~~ 124 (136)
T 2hgl_A 113 GHRYIEVFKSHR 124 (136)
T ss_dssp SSSEEEEEECCH
T ss_pred CCEEEEEEECCh
Confidence 999887765443
No 119
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=4.3e-06 Score=64.83 Aligned_cols=80 Identities=13% Similarity=0.251 Sum_probs=61.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+++|| +|.| ++++||++||.. ||. + .|.|-.+ ..++...||.|.|.+.+....+|. .+ ...|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-~-~v~i~~d-~~g~~~G~afV~F~~~~~a~~Al~-~~--~~~~~ 80 (102)
T 1wez_A 11 QSTTGHCVHM---RGLPYRATENDIYNFFSP-LNP-M-RVHIEIG-PDGRVTGEADVEFATHEDAVAAMA-KD--KANMQ 80 (102)
T ss_dssp CCSSSCEEEE---ESCCTTCCHHHHHHSSCS-CCC-S-EEEEEES-SSSCEEEEEEEECSSSHHHHHHHT-TS--SCCSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCc-e-EEEEEEC-CCCCEeeEEEEEECCHHHHHHHHH-hC--CCeEC
Confidence 4667789988 7988 999999999997 993 4 6666552 368899999999999999888885 22 23678
Q ss_pred CeeeEEEecccC
Q 038800 267 GKHIWARKYERR 278 (280)
Q Consensus 267 gk~iWarky~pk 278 (280)
||.|-+..-.++
T Consensus 81 gr~i~V~~~~~~ 92 (102)
T 1wez_A 81 HRYVELFLNSTA 92 (102)
T ss_dssp SSCCEEEEECCC
T ss_pred CcEEEEEECCCC
Confidence 998877655443
No 120
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=1.8e-05 Score=61.03 Aligned_cols=74 Identities=14% Similarity=0.277 Sum_probs=59.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~ 264 (280)
+...+|+|| +|.| ++++||+++|.+ ||. |+.|.|-.+ ..||+|.|.+.+....++ +|. .
T Consensus 22 ~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~-i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~-----~ 85 (109)
T 1x4g_A 22 SPKNCTVYC---GGIASGLTDQLMRQTFSP-FGQ-IMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT-----T 85 (109)
T ss_dssp CSSCCEEEE---ECCSSCCCHHHHHHHHHH-HSC-EEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTC-----E
T ss_pred CCCCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCC-----E
Confidence 456789988 8888 999999999996 998 677777652 679999999988877766 452 5
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-++...|++
T Consensus 86 ~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 86 IEGHVVKCYWGKESP 100 (109)
T ss_dssp ETTEECEEECCCCCC
T ss_pred ECCcEEEEEecCCCC
Confidence 899999877766654
No 121
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.10 E-value=1.9e-05 Score=61.06 Aligned_cols=76 Identities=11% Similarity=0.139 Sum_probs=59.2
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+...+++|| +|.| ++++||+++|.+ ||+ |+.|.+..+ .||+|.|.+.+....++...+. ..|+|
T Consensus 12 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g--~~~~g 77 (108)
T 1x4c_A 12 RRSENRVVV---SGLPPSGSWQDLKDHMRE-AGD-VCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDN--TKFRS 77 (108)
T ss_dssp CSCCCEEEE---ESCCSSCCHHHHHHHHGG-GSC-EEEEEEETT-------TEEEEEESSHHHHHHHHHHSSS--EEEEC
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EeEEEEecC-------CEEEEEECCHHHHHHHHHHHCc--CCccC
Confidence 345678887 7888 999999999996 998 677777652 7999999998887777653221 25788
Q ss_pred -----eeeEEEecccCC
Q 038800 268 -----KHIWARKYERRD 279 (280)
Q Consensus 268 -----k~iWarky~pk~ 279 (280)
+.+-++...|++
T Consensus 78 ~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 78 HEGETAYIRVKVDGPRS 94 (108)
T ss_dssp TTSCEEEEEEEESSCCS
T ss_pred CcCcceEEEEEeCCCCC
Confidence 999888887765
No 122
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.10 E-value=9.6e-06 Score=64.15 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=59.9
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCe
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGK 268 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk 268 (280)
+..|++|| ++.| +|++|+++.|.+ ||. |.+|.|-+ ...||+|.|.+.+....++...+...+.|+||
T Consensus 19 ~ps~~l~V---~NLp~~~te~~L~~lF~~-fG~-V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 19 PASPVVHI---RGLIDGVVEADLVEALQE-FGP-ISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp CCCSEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred CCCcEEEE---eCCCCCCCHHHHHHHHhc-cCC-EEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 34588988 8887 999999999997 999 56777644 24799999999888777766444445789999
Q ss_pred eeEEEecccC
Q 038800 269 HIWARKYERR 278 (280)
Q Consensus 269 ~iWarky~pk 278 (280)
.+.+.--.+|
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9988765554
No 123
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.09 E-value=3.5e-06 Score=63.19 Aligned_cols=77 Identities=18% Similarity=0.362 Sum_probs=60.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHH----HHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCce
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVK----ELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRI 260 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~----~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~ 260 (280)
++..+|+|| +|.| ++++||+ ++|.+ ||+ |+.|.+-+ .++...||.|.|.+.+....++ +|.
T Consensus 5 ~~~~~~l~V---~nLp~~~~~~~l~~~l~~~f~~-~G~-i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~-- 74 (97)
T 1nu4_A 5 TRPNHTIYI---NNLNEKIKKDELKKSLHAIFSR-FGQ-ILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-- 74 (97)
T ss_dssp -CCCSEEEE---ESCCTTSCHHHHHHHHHHHHGG-GSC-EEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTC--
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHHHHHh-CCC-EEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCC--
Confidence 345689988 6877 9999999 99986 998 66677654 3566789999999988877665 452
Q ss_pred eEEEEcCeeeEEEecccCC
Q 038800 261 AKFRINGKHIWARKYERRD 279 (280)
Q Consensus 261 ~Kf~Ingk~iWarky~pk~ 279 (280)
.++|+.+-++...|++
T Consensus 75 ---~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 75 ---PFYDKPMRIQYAKTDS 90 (97)
T ss_dssp ---EETTEECEEEECSSCC
T ss_pred ---EECCcEEEEEEccCCC
Confidence 5799999888877765
No 124
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.08 E-value=5.6e-06 Score=67.64 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=62.5
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeee-EEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVE-SIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFR 264 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve-~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~ 264 (280)
..+++.+++|| +|.| +|++||++||.. | ..++ +|.|-.+.. +++.+||+|.|.+++....+|.-.. -.
T Consensus 37 ~~~~~~~~lfV---gnLp~~~te~dL~~~F~~-~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~---~~ 107 (126)
T 2hgm_A 37 ADSANDGFVRL---RGLPFGCTKEEIVQFFSG-L-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHK---ER 107 (126)
T ss_dssp TCSSSCCEEEE---ECCCTTCCHHHHHHHTTT-S-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTT---CC
T ss_pred CCCCCCCEEEE---eCCCCCCCHHHHHHHHhc-C-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCC---CE
Confidence 45667888888 8988 999999999997 7 4442 777766334 8999999999999999999887322 36
Q ss_pred EcCeeeEEEeccc
Q 038800 265 INGKHIWARKYER 277 (280)
Q Consensus 265 Ingk~iWarky~p 277 (280)
|+||.|-+.+-.|
T Consensus 108 l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 108 IGHRYIEVFKSSQ 120 (126)
T ss_dssp BTTBCCCCEEECH
T ss_pred ECCEEEEEEECCH
Confidence 8999886655443
No 125
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=1.9e-05 Score=59.73 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=59.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHH----HHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVK----ELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKF 263 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~----~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf 263 (280)
..+..++|| +|.| ++++|++ ++|.+ ||. |++|.+-.+..+ ..||+|.|.+.+....++...+. .
T Consensus 6 ~~~~~~l~V---~nL~~~~~~~~l~~~l~~~F~~-~G~-v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g--~ 75 (96)
T 2dgx_A 6 SGNGADVQV---SNIDYRLSRKELQQLLQEAFAR-HGK-VKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHR--Y 75 (96)
T ss_dssp CSSCEEEEE---ESCCTTSCHHHHHHHHHHHHHH-HSC-EEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTT--E
T ss_pred CCCCCEEEE---ECCCCCCCHHHHHHHHHHhccc-cCc-EEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCC--C
Confidence 456678888 7887 9999999 99996 999 566666542222 66999999998887776542111 2
Q ss_pred EEcCeeeEEEecccCC
Q 038800 264 RINGKHIWARKYERRD 279 (280)
Q Consensus 264 ~Ingk~iWarky~pk~ 279 (280)
.|+|+.+-++...|+.
T Consensus 76 ~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 76 KIGSKKILVSLATGAS 91 (96)
T ss_dssp EETTEEEEEEECCCSS
T ss_pred EECCeEEEEEEcCCCC
Confidence 5899999888776654
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.07 E-value=9.8e-06 Score=63.28 Aligned_cols=73 Identities=16% Similarity=0.366 Sum_probs=58.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.|.+- ..||+|.|.+.+....++ +|.
T Consensus 27 ~~~~~~~l~V---~nLp~~~t~~~L~~~F~~-~G~-i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~----- 88 (108)
T 2jvo_A 27 GELSNTRLFV---RPFPLDVQESELNEIFGP-FGP-MKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGK----- 88 (108)
T ss_dssp -CCSCSEEEE---CSSCTTCCHHHHHHHHTT-TSC-CCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-EEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCC-----
Confidence 4567789998 8888 999999999986 998 6677774 579999999988877765 453
Q ss_pred EEcCeeeEEEecccCC
Q 038800 264 RINGKHIWARKYERRD 279 (280)
Q Consensus 264 ~Ingk~iWarky~pk~ 279 (280)
.++|+.+-+....|++
T Consensus 89 ~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 89 SFANQPLEVVYSKLPA 104 (108)
T ss_dssp EETTEECEEESCSCCC
T ss_pred EECCeEEEEEEecCCC
Confidence 4699999887766654
No 127
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.06 E-value=6.3e-06 Score=61.57 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=57.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
++..+++|| +|.| ++++||+++|.+ ||.+.+...+.+ ...++...||.|.|.+.+....++...+ ...|+|
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~Ai~~l~--g~~~~g 84 (95)
T 2ek1_A 12 KPGPTVIKV---QNMPFTVSIDEILDFFYG-YQVIPGSVCLKY-NEKGMPTGEAMVAFESRDEATAAVIDLN--DRPIGS 84 (95)
T ss_dssp ---CEEEEE---ECCCTTCCHHHHHHHTTT-SCBCTTCCEEEE-CTTSCEEEEEEEEESSHHHHHHHHHHHT--TCEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCCccceEEEEe-CCCCCEeeEEEEEECCHHHHHHHHHHhC--CCeECC
Confidence 344588988 7888 999999999986 998655555555 4678889999999999888777664211 125889
Q ss_pred eeeEEEe
Q 038800 268 KHIWARK 274 (280)
Q Consensus 268 k~iWark 274 (280)
+.+-+..
T Consensus 85 r~l~v~~ 91 (95)
T 2ek1_A 85 RKVKLSG 91 (95)
T ss_dssp EECEEEC
T ss_pred cEEEEEe
Confidence 9886654
No 128
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.06 E-value=8e-06 Score=65.72 Aligned_cols=77 Identities=13% Similarity=0.225 Sum_probs=60.8
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEEEEc
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKFRIN 266 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf~In 266 (280)
..+|+|| +|.| ++++||+++|.+ ||+ |++|.+-.+..+++..+||.|.|.+.+....++. |. .++
T Consensus 2 ~~~~l~v---~nlp~~~~~~~l~~~f~~-~G~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-----~~~ 71 (168)
T 1b7f_A 2 SNTNLIV---NYLPQDMTDRELYALFRA-IGP-INTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI-----TVR 71 (168)
T ss_dssp CCSEEEE---ECCCTTCCHHHHHHHHHT-TSC-EEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-----EET
T ss_pred CccEEEE---eCCCCCCCHHHHHHHHHh-cCC-eeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC-----EeC
Confidence 3589988 7988 999999999987 999 5566554434578889999999999988877764 43 579
Q ss_pred CeeeEEEecccC
Q 038800 267 GKHIWARKYERR 278 (280)
Q Consensus 267 gk~iWarky~pk 278 (280)
|+.+-++...|+
T Consensus 72 g~~l~v~~~~~~ 83 (168)
T 1b7f_A 72 NKRLKVSYARPG 83 (168)
T ss_dssp TEECEEEECCCC
T ss_pred CcEEEEEecCCC
Confidence 999887766554
No 129
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.05 E-value=6.4e-06 Score=61.77 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=62.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
..++.+|+|| +|.| ++++||+++|.+ ||++ ..+ . ..++...||+|.|.+.+....++...+. ..|+
T Consensus 12 ~~~~~~~l~V---~nL~~~~t~~~l~~~F~~-~g~v-~~~---~--~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~ 79 (96)
T 1fjc_A 12 KVRAARTLLA---KNLSFNITEDELKEVFED-ALEI-RLV---S--QDGKSKGIAYIEFKSEADAEKNLEEKQG--AEID 79 (96)
T ss_dssp TTTGGGEEEE---ESCCSSCCHHHHHHHHCS-EEEE-CCE---E--ETTEEEEEEEEEESSHHHHHHHHHHTTE--EEET
T ss_pred cCCCCCEEEE---eCCCCCCCHHHHHHHHhh-CCcE-EEe---C--CCCCcceEEEEEECCHHHHHHHHHHhCC--CEEC
Confidence 3556789998 7888 999999999997 9974 333 2 2477889999999999998888764332 4789
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 80 g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 80 GRSVSLYYTGEKG 92 (96)
T ss_dssp TEEEEEEECSSSC
T ss_pred CeEEEEEEcCCCC
Confidence 9999988887765
No 130
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=1.7e-05 Score=60.07 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=61.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+|+|| +|.| ++++||+++|.. |++ ...+.+ ...++...||+|.|.+.+....++...+. ..|+
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~~~---~~~~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~ 80 (102)
T 2fc8_A 11 RSQPSKTLFV---KGLSEDTTEETLKESFDG-SVR---ARIVTD-RETGSSKGFGFVDFNSEEDAKAAKEAMED--GEID 80 (102)
T ss_dssp SSCCCSSEEE---ECCCTTCCHHHHHHTSTT-CSE---EEEEEC-SSSCSEEEEEEEECSSHHHHHHHHHHHTT--CEET
T ss_pred CCCCCCEEEE---eCCCCccCHHHHHHHhcC-CeE---EEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCC--CeEC
Confidence 4567799998 7888 999999999994 653 233333 45688889999999999887776642111 2589
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...|++
T Consensus 81 g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 81 GNKVTLDWAKPKG 93 (102)
T ss_dssp TEECEEEECCCCC
T ss_pred CeEEEEEEecCCC
Confidence 9999999888775
No 131
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.04 E-value=6.7e-06 Score=62.06 Aligned_cols=74 Identities=12% Similarity=0.271 Sum_probs=58.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf~ 264 (280)
+...+++|| +|.| ++++||+++|.+ ||. |+.|.|.. + ..||.|.|.+.+....++. |. .
T Consensus 14 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~v~~~~----~--~g~afV~f~~~~~A~~A~~~l~g~-----~ 77 (97)
T 1why_A 14 ANPTTRLWV---GGLGPNTSLAALAREFDR-FGS-IRTIDHVK----G--DSFAYIQYESLDAAQAACAKMRGF-----P 77 (97)
T ss_dssp CCCCSCEEE---ECCCSSCCHHHHHHHHHT-TSC-EEEEEECS----S--SCCEEEEESSHHHHHHHHHHHTTC-----B
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eeEEEEeC----C--CCEEEEEECCHHHHHHHHHHHCCC-----E
Confidence 445689998 6877 999999999996 998 77787754 1 5699999999888776654 53 4
Q ss_pred Ec--CeeeEEEecccCC
Q 038800 265 IN--GKHIWARKYERRD 279 (280)
Q Consensus 265 In--gk~iWarky~pk~ 279 (280)
|+ |+.+-++...|++
T Consensus 78 ~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 78 LGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CSSSSCBCEEEECCCCC
T ss_pred eCCCCcEEEEEECCCCC
Confidence 68 9999988888775
No 132
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.02 E-value=1.7e-05 Score=61.12 Aligned_cols=78 Identities=10% Similarity=0.239 Sum_probs=57.5
Q ss_pred CCceEEEEccCCCc--C------CHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEE
Q 038800 192 DDRTMFLTFSRGFP--V------TRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKF 263 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--v------se~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf 263 (280)
..+|+|| +|.| + ++++|+++|.+ ||. |+.|.|-+ .+++..+||+|.|.+.+....++..-+- .
T Consensus 14 ~~~~l~V---~nLp~~~~~~~~~t~~~l~~~F~~-~G~-v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g--~ 84 (105)
T 2nlw_A 14 IDSVIVV---DNVPQVGPDRLEKLKNVIHKIFSK-FGK-ITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADG--Y 84 (105)
T ss_dssp CCSEEEE---ESCCCCCTTTTTHHHHHHHHHHGG-GSC-EEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSS--E
T ss_pred CCCEEEE---eCCCcchhhhhHHHHHHHHHHHhc-CCC-EEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCC--c
Confidence 3578988 7888 5 57999999986 999 66666654 4578899999999998887776553221 3
Q ss_pred EEcCe-eeEEEecccC
Q 038800 264 RINGK-HIWARKYERR 278 (280)
Q Consensus 264 ~Ingk-~iWarky~pk 278 (280)
.++|+ .+-+..+.+.
T Consensus 85 ~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDF 100 (105)
T ss_dssp ECSTTCEEEEECSCCC
T ss_pred ccCCCceEEEEEcchH
Confidence 57898 6766655443
No 133
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.4e-05 Score=60.52 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=55.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
.+.+.+|+|| +|.| ++++||+++|.+ ||. |+++.|. +...||+|.|.+.+....++ +|.
T Consensus 23 ~~~~~~~l~V---~nlp~~~~~~~l~~~f~~-~G~-i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~----- 86 (101)
T 2la4_A 23 APPRVTTAYI---GNIPHFATEADLIPLFQN-FGF-ILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANF----- 86 (101)
T ss_dssp SCSSCCEEEE---ESCCTTCCHHHHHHHHHT-TSC-CSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC-----
T ss_pred CCCCCCEEEE---cCCCcccCHHHHHHHHHh-CCC-EEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCC-----
Confidence 3456789998 7887 999999999997 998 6777774 34689999999988777665 452
Q ss_pred EEcCeeeEEEeccc
Q 038800 264 RINGKHIWARKYER 277 (280)
Q Consensus 264 ~Ingk~iWarky~p 277 (280)
.++|+.+-++...|
T Consensus 87 ~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 87 PFQGRNLRTGWGKE 100 (101)
T ss_dssp EETTEECCCCBCCC
T ss_pred eECCeEEEEEeccC
Confidence 58899885554433
No 134
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=7.7e-06 Score=63.69 Aligned_cols=82 Identities=12% Similarity=0.218 Sum_probs=60.5
Q ss_pred CCCceEEEEccCCCc--CCHHHHH---HHHHhhcCCeeeEEEeeccCCC---CCCCceEEEEEcchhhHHHHhCCCceeE
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVK---ELFTRMYGDCVESIHMQENVPS---NEQPLFARLVLQSVANVDQILSGRRIAK 262 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~---~fF~~~yGdcve~v~m~~~~~~---~~qplfarivf~s~~~v~~vL~g~~~~K 262 (280)
...+++|| +|.| ++++|++ ++|.+ ||+ |+.|.+..+... ++...||+|.|.+.+....++...+-
T Consensus 13 ~~~~~l~V---~nLp~~~~~~~l~~~~~~F~~-~G~-i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng-- 85 (111)
T 2cpi_A 13 VQKNLVFV---VGLSQRLADPEVLKRPEYFGK-FGK-IHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN-- 85 (111)
T ss_dssp CCSSCEEE---EEECTTTCCHHHHHSTTTTTT-TSC-EEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT--
T ss_pred cCCCEEEE---ECCCCCCCHHHHHHHHHHhhc-cCC-EEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC--
Confidence 34678988 7887 9999999 99996 999 455555442332 35668999999998887777653111
Q ss_pred EEEcCeeeEEEecccCC
Q 038800 263 FRINGKHIWARKYERRD 279 (280)
Q Consensus 263 f~Ingk~iWarky~pk~ 279 (280)
..|+|+.+-+....||.
T Consensus 86 ~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 86 VVVDGRTLKASLGTTKY 102 (111)
T ss_dssp EEETTEEEEEESCCCCS
T ss_pred CEECCEEEEEEeccccc
Confidence 25899999888877764
No 135
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=4.6e-05 Score=57.56 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=57.9
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhc--CCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMY--GDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFR 264 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~y--Gdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~ 264 (280)
.....+++|| +|.| ++++||+++|.+ | |. |++|.+. ..||+|.|.+.+....++...+. ..
T Consensus 11 ~~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~g~-v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g--~~ 75 (99)
T 2cpd_A 11 TMSSVKILYV---RNLMLSTSEEMIEKEFNN-IKPGA-VERVKKI--------RDYAFVHFSNREDAVEAMKALNG--KV 75 (99)
T ss_dssp CSSCCCEEEE---ESCCTTCCHHHHHHHHHT-TSTTC-EEEEEEC--------SSEEEEEESSHHHHHHHHHHHSS--EE
T ss_pred ccCCcCEEEE---eCCCCCCCHHHHHHHHHh-cCCcc-eEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCC--CE
Confidence 4556789998 7887 999999999997 9 66 5666653 24999999998887776652221 26
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-++...|++
T Consensus 76 ~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 76 LDGSPIEVTLAKPVD 90 (99)
T ss_dssp ETTEEEEEECCCCCC
T ss_pred eCCcEEEEEECCCCC
Confidence 799999888777765
No 136
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.99 E-value=9.5e-06 Score=64.91 Aligned_cols=76 Identities=14% Similarity=0.310 Sum_probs=58.9
Q ss_pred CCCCCCceEEEEccCCCcCCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEE
Q 038800 188 NASEDDRTMFLTFSRGFPVTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFR 264 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~Pvse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~ 264 (280)
..+.+.+|+|| +|+.++++||+++|.+ ||. |+.|.|- +...||+|.|.+.+....++ +|. .
T Consensus 34 ~~~~~~~~lfV---gnl~~te~~L~~~F~~-~G~-I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~-----~ 97 (121)
T 2bz2_A 34 RAPRKGNTLYV---YGEDMTPTLLRGAFSP-FGN-IIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT-----Q 97 (121)
T ss_dssp -CCCCCCEEEE---ECSSCCHHHHHHHHST-TCC-CSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC-----B
T ss_pred CCCCCCCEEEE---cCCCCCHHHHHHHHHc-cCC-EEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCC-----E
Confidence 34567899999 4689999999999986 999 5666663 45679999999988877766 554 3
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-+....|++
T Consensus 98 ~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 98 VESVQLKVNIARKQP 112 (121)
T ss_dssp CSSCBCEEEECCSSC
T ss_pred ECCeEEEEEEeCCCC
Confidence 689999877766654
No 137
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=1.2e-05 Score=63.58 Aligned_cols=78 Identities=14% Similarity=0.253 Sum_probs=59.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
..+.+++|| +|.| ++++||++||.. | . |++|.|-.+. .++..+||+|.|.+.+..+.+|. .+ .-.|+|
T Consensus 13 ~~~~~~v~V---~nLp~~~te~dl~~~F~~-~-~-v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~--~~~~~g 82 (109)
T 2dnn_A 13 NPDDLYVSV---HGMPFSAMENDVRDFFHG-L-R-VDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALK-RN--RMLMIQ 82 (109)
T ss_dssp CHHHHEEEE---ECCCSSCCHHHHHHHTTT-S-C-CCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHH-TT--TEEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHhcc-C-C-eeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHh-cC--CCeECC
Confidence 445678877 9988 999999999997 6 4 6677776533 48899999999999988888874 22 236899
Q ss_pred eeeEEEeccc
Q 038800 268 KHIWARKYER 277 (280)
Q Consensus 268 k~iWarky~p 277 (280)
|.|.+.+-.+
T Consensus 83 r~i~V~~a~~ 92 (109)
T 2dnn_A 83 RYVEVSPATE 92 (109)
T ss_dssp EEEEEEECCH
T ss_pred eEEEEEECCc
Confidence 9887765443
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=4.4e-05 Score=55.73 Aligned_cols=70 Identities=14% Similarity=0.369 Sum_probs=54.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCC-ceeEEEEc
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGR-RIAKFRIN 266 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~-~~~Kf~In 266 (280)
+...+|+|| +|.| ++++||+++|.+ ||+ |+.+.+-. ...||.|.|.+.+....++..- + ...++
T Consensus 9 ~~~~~~l~V---~~l~~~~t~~~l~~~f~~-~G~-i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~--~~~~~ 75 (85)
T 2ytc_A 9 DKTITTLYV---GGLGDTITETDLRNHFYQ-FGE-IRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFN--KLIVN 75 (85)
T ss_dssp CSSCCCEEE---ECCTTTSCHHHHHHHHHT-TSC-EEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTT--TCEET
T ss_pred CCCccEEEE---cCCCCCCCHHHHHHHHHh-CCC-EeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcC--CeeEC
Confidence 456689988 7877 999999999996 999 77777765 2579999999999888887532 1 12688
Q ss_pred CeeeEE
Q 038800 267 GKHIWA 272 (280)
Q Consensus 267 gk~iWa 272 (280)
|+.+-+
T Consensus 76 g~~l~v 81 (85)
T 2ytc_A 76 GRRLNV 81 (85)
T ss_dssp TEECCE
T ss_pred CCEEEE
Confidence 987743
No 139
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.22 E-value=9.4e-07 Score=69.04 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=63.0
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeE-------EEeeccCCCCCCCceEEEEEcchhhHHHHhCCCce
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVES-------IHMQENVPSNEQPLFARLVLQSVANVDQILSGRRI 260 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~-------v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~ 260 (280)
..+.+++|| +|.| ++++||+++|.+ ||.+.+. |.+..+..+++...||+|.|.+.+....++...+.
T Consensus 4 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 4 NSDNNTIFV---QGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 346788888 7888 999999999997 9985431 44444235688899999999999988887763222
Q ss_pred eEEEEcCeeeEEEecccCC
Q 038800 261 AKFRINGKHIWARKYERRD 279 (280)
Q Consensus 261 ~Kf~Ingk~iWarky~pk~ 279 (280)
..|+|+.+-++...|++
T Consensus 80 --~~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 80 --KEFSGNPIKVSFATRRA 96 (116)
Confidence 35789999777766654
No 140
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.96 E-value=5.7e-05 Score=57.54 Aligned_cols=77 Identities=16% Similarity=0.327 Sum_probs=58.4
Q ss_pred CCCCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEE
Q 038800 188 NASEDDRTMFLTFSRGFP---VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFR 264 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~ 264 (280)
..+.+.+++|| +|.| ++++|++++|.+ ||. |+.|.|. .+||+|.|.+.+....++...+. ..
T Consensus 17 ~~~~~~~~l~V---~nLp~~~~t~~~L~~~F~~-~G~-v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g--~~ 81 (97)
T 2xnq_A 17 RGSHMKSRLFI---GNLPLKNVSKEDLFRIFSP-YGH-IMQINIK--------NAFGFIQFDNPQSVRDAIEXESQ--EM 81 (97)
T ss_dssp --CCTTCEEEE---ESCCSSCCCHHHHHHHHGG-GSC-EEEEEEC--------SSEEEEEESSHHHHHHHHHHHTT--SE
T ss_pred CCCCCCCEEEE---eCCCcccCCHHHHHHHHHh-cCC-EEEEEEe--------CCEEEEEECCHHHHHHHHHHcCC--CE
Confidence 45667899999 6766 699999999997 999 7777772 57999999998887776652111 25
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
++|+.+-++...++.
T Consensus 82 ~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 82 NFGKKLILEVSSSNA 96 (97)
T ss_dssp ETTEECEEEECCCCC
T ss_pred ECCEEEEEEecCCCC
Confidence 789999888776664
No 141
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.96 E-value=3.6e-05 Score=59.35 Aligned_cols=70 Identities=16% Similarity=0.340 Sum_probs=55.6
Q ss_pred CCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 190 SEDDRTMFLTFSRGFP---VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
....+++|| ++.| ++++||+++|.+ ||. |+.|.| ...||+|.|.+.+....++ +|.
T Consensus 24 ~~~~~~l~V---~nl~~~~~t~~~l~~~F~~-~G~-v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~----- 85 (110)
T 1wf1_A 24 KSINSRVFI---GNLNTALVKKSDVETIFSK-YGR-VAGCSV--------HKGYAFVQYSNERHARAAVLGENGR----- 85 (110)
T ss_dssp TTCSSEEEE---CSCCCSSCCHHHHHHHHGG-GSC-CSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTC-----
T ss_pred CCCCcEEEE---eCCCcccCCHHHHHHHHHh-CCC-eEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCC-----
Confidence 445689998 7877 899999999986 998 667777 2479999999988877766 452
Q ss_pred EEcCeeeEEEeccc
Q 038800 264 RINGKHIWARKYER 277 (280)
Q Consensus 264 ~Ingk~iWarky~p 277 (280)
.|+|+.+-++...+
T Consensus 86 ~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 86 VLAGQTLDINMAGE 99 (110)
T ss_dssp EETTEECCEEESCC
T ss_pred EECCeEEEEEECCC
Confidence 58999997776653
No 142
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.96 E-value=6.7e-06 Score=66.75 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=58.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
.+..+++|| ++.| ++|+||+++|.+ ||. |++|.|-.+ ..||+|.|.+.+....++...+.....|+|
T Consensus 28 ~~ps~~LfV---gNLp~~vte~dL~~lF~~-fG~-V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 28 GVPSRVIHI---RKLPIDVTEGEVISLGLP-FGK-VTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SSCCSEEEE---ESCCTTCCHHHHHHHHTT-TSC-CCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 345689988 7888 999999999996 999 555665441 589999999988777766522211246899
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-+....+|+
T Consensus 97 r~l~V~~a~~k~ 108 (119)
T 2ad9_A 97 QPIYIQFSNHKE 108 (119)
T ss_dssp BCCEEEECSSSS
T ss_pred eEEEEEEccCCC
Confidence 999887766654
No 143
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=97.95 E-value=4.3e-06 Score=69.23 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=58.4
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+++.+++|| +|.| +||+||++||.+ || |+.|.+-.+. .+++..||+|.|.+.+....+|. .+ .-.|+
T Consensus 42 ~~~~~~~lfV---~nLp~~~te~dL~~~F~~-~G--i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al~-~~--g~~l~ 111 (139)
T 2hgn_A 42 QSTTGHCVHM---RGLPYKATENDIYNFFSP-LN--PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAMS-KD--RANMQ 111 (139)
T ss_dssp ---CCCCEEC---CSCCTTCCHHHHHHHHCS-CC--CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHTT-CC--SCSSS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cC--CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHHh-hC--CCEEC
Confidence 4566788877 8988 999999999997 99 3477766533 48899999999999999988883 11 23578
Q ss_pred CeeeEEEeccc
Q 038800 267 GKHIWARKYER 277 (280)
Q Consensus 267 gk~iWarky~p 277 (280)
||.|-+..-.+
T Consensus 112 gR~i~V~~a~~ 122 (139)
T 2hgn_A 112 HRYIELFLNST 122 (139)
T ss_dssp SCCCCCEECCC
T ss_pred CEEEEEEECCC
Confidence 88776554444
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.94 E-value=3.2e-05 Score=61.69 Aligned_cols=75 Identities=15% Similarity=0.324 Sum_probs=58.1
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf 263 (280)
.+.+.+++|| +|.| ++++||+++|.+ ||. |+.+.+..+...+.+.+||.|.|.+.+....++. |.
T Consensus 83 ~~~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----- 152 (166)
T 3md3_A 83 SSDDTFNLFV---GDLNVNVDDETLRNAFKD-FPS-YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ----- 152 (166)
T ss_dssp CCTTCEEEEE---ESCCTTCCHHHHHHHHTT-STT-EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-----
T ss_pred CCCCCceEEE---CCCCCCCCHHHHHHHHhc-cCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-----
Confidence 3456788888 6877 999999999975 999 5556555434678889999999999888777665 53
Q ss_pred EEcCeeeEEE
Q 038800 264 RINGKHIWAR 273 (280)
Q Consensus 264 ~Ingk~iWar 273 (280)
.|+|+.+-+.
T Consensus 153 ~~~g~~i~v~ 162 (166)
T 3md3_A 153 DLNGRPLRIN 162 (166)
T ss_dssp EETTEECEEE
T ss_pred ccCCcEEEEE
Confidence 4799998654
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.94 E-value=1.3e-05 Score=67.29 Aligned_cols=81 Identities=14% Similarity=0.202 Sum_probs=58.9
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
.++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-.+...++...||.|.|.+.+....++...+. ..|+|
T Consensus 25 ~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~G~-i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~--~~~~g 97 (216)
T 2qfj_A 25 LAIMSRVYV---GSIYYELGEDTIRQAFAP-FGP-IKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS--VMLGG 97 (216)
T ss_dssp HHHHTEEEE---ECCCTTCCHHHHHHHHGG-GSC-EEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS--CCCC-
T ss_pred cCcCCEEEE---ECCCCCCCHHHHHHHHHh-CCC-EEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC--CeeCC
Confidence 456789999 7888 999999999986 999 55566544345788999999999999988877652111 14789
Q ss_pred eeeEEEeccc
Q 038800 268 KHIWARKYER 277 (280)
Q Consensus 268 k~iWarky~p 277 (280)
+.+.+....+
T Consensus 98 ~~l~v~~~~~ 107 (216)
T 2qfj_A 98 RNIKVGRPSN 107 (216)
T ss_dssp CCCEEECCSC
T ss_pred eeEEEecCCC
Confidence 8887765443
No 146
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.93 E-value=3.6e-05 Score=56.35 Aligned_cols=71 Identities=20% Similarity=0.385 Sum_probs=55.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhc----C-------CeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMY----G-------DCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS 256 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~y----G-------dcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~ 256 (280)
+.+.||+|| +|.| ++++|++++|.+ | | . |.++.+.. ...||.|.|.+.+....++
T Consensus 3 ~~~~~~l~V---~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~-v~~~~~~~------~kg~afV~f~~~~~a~~A~- 70 (87)
T 2hzc_A 3 LGSARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNP-VLAVQINQ------DKNFAFLEFRSVDETTQAM- 70 (87)
T ss_dssp SGGGGEEEE---ESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCS-EEEEEECS------SSSEEEEEESSHHHHHHHG-
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-HhhhcccccCCCCc-ceEEEecC------CCcEEEEEcCCHHHHHHHH-
Confidence 456799988 7887 999999999997 7 7 4 67777754 2689999999999888887
Q ss_pred CCceeEEEEcCeeeEEEe
Q 038800 257 GRRIAKFRINGKHIWARK 274 (280)
Q Consensus 257 g~~~~Kf~Ingk~iWark 274 (280)
..+. ..++|+.+-+++
T Consensus 71 ~l~g--~~~~g~~l~V~r 86 (87)
T 2hzc_A 71 AFDG--IIFQGQSLKIRR 86 (87)
T ss_dssp GGTT--CEETTEECEEEC
T ss_pred hcCC--CEECCeEEEEeC
Confidence 4322 258999887764
No 147
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.92 E-value=6.3e-05 Score=60.76 Aligned_cols=78 Identities=19% Similarity=0.411 Sum_probs=59.4
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+.+.+++|| +|.| ++++||+++|.+ ||+ |+.+.+..+...+++..||.|.|.+.+....++..-+. ..++|
T Consensus 91 ~~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g 163 (172)
T 2g4b_A 91 LPGAHKLFI---GGLPNYLNDDQVKELLTS-FGP-LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG--MQLGD 163 (172)
T ss_dssp CTTTTCEEE---ECCCTTCCHHHHHHHHHT-TSC-EEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT--CEETT
T ss_pred CCCCCEEEE---EcCCCcCCHHHHHHHHHh-cCC-ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC--CEECC
Confidence 455789988 7877 999999999996 999 67777766445788899999999998887766542110 25789
Q ss_pred eeeEEEe
Q 038800 268 KHIWARK 274 (280)
Q Consensus 268 k~iWark 274 (280)
+.+-++.
T Consensus 164 ~~l~V~~ 170 (172)
T 2g4b_A 164 KKLLVQR 170 (172)
T ss_dssp EECEEEE
T ss_pred eEEEEEe
Confidence 9886653
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.90 E-value=2e-05 Score=64.08 Aligned_cols=76 Identities=17% Similarity=0.326 Sum_probs=60.6
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEE
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKF 263 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf 263 (280)
.+...+++|| +|.| ++++||+++|.+ ||+ |++|.+-.+ +..||+|.|.+.+....++ +|.
T Consensus 69 ~~~~~~~l~V---~nl~~~~t~~~l~~~F~~-~G~-i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~----- 133 (150)
T 2i2y_A 69 SCPLDCKVYV---GNLGNNGNKTELERAFGY-YGP-LRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR----- 133 (150)
T ss_dssp SSTTSCEEEE---ESCCSCCSCHHHHHHHHH-HSC-EEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS-----
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-hCC-EEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC-----
Confidence 4556789998 7877 999999999997 999 567777542 5689999999988877665 463
Q ss_pred EEcCeeeEEEecccCC
Q 038800 264 RINGKHIWARKYERRD 279 (280)
Q Consensus 264 ~Ingk~iWarky~pk~ 279 (280)
.|+|+.+-++...|++
T Consensus 134 ~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 134 TLCGCRVRVELSNGEK 149 (150)
T ss_dssp CSSSSCCEEEECCCCC
T ss_pred EECCeEEEEEEcCCCC
Confidence 3699999888887775
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.89 E-value=2.1e-05 Score=65.88 Aligned_cols=79 Identities=10% Similarity=0.246 Sum_probs=61.9
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEEEE
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKFRI 265 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf~I 265 (280)
...+++|| +|.| ++++||+++|.+ ||. |+.|.+..+...++...||+|.|.+.+....++. |. .|
T Consensus 123 ~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~-----~~ 192 (216)
T 2qfj_A 123 RAFNRIYV---ASVHQDLSDDDIKSVFEA-FGK-IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF-----DL 192 (216)
T ss_dssp TTSCEEEE---ECCCTTCCHHHHHHHHTT-SSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----BC
T ss_pred CCCcEEEE---eCCCCcCCHHHHHHHHhc-cCC-eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC-----Ee
Confidence 45578988 7877 999999999986 998 5666665534678889999999999888776654 53 37
Q ss_pred cCeeeEEEecccCC
Q 038800 266 NGKHIWARKYERRD 279 (280)
Q Consensus 266 ngk~iWarky~pk~ 279 (280)
+|+.+=++...|+.
T Consensus 193 ~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 193 GGQYLRVGKAVTPP 206 (216)
T ss_dssp SSSBCEEEECSSCS
T ss_pred CCcEEEEEEecCCC
Confidence 99999888777654
No 150
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.86 E-value=1.6e-05 Score=61.56 Aligned_cols=61 Identities=13% Similarity=0.367 Sum_probs=49.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS 256 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~ 256 (280)
..+.+++|| +|.| ++++||+++|.+ ||. |+.+.+-.+. .++...||+|.|.+.+....++.
T Consensus 22 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 22 EQDPTNLYI---SNLPLSMDEQELENMLKP-FGQ-VISTRILRDS-SGTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCCTTEEEE---ESCCTTCCHHHHHHTTTT-TSC-EEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEEECC-CCCcceEEEEEECCHHHHHHHHH
Confidence 456789988 7887 999999999987 999 6667666633 78889999999999888776654
No 151
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.86 E-value=2.6e-05 Score=56.96 Aligned_cols=67 Identities=12% Similarity=0.302 Sum_probs=50.7
Q ss_pred CceEEEEccCCCc--C------CHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEE
Q 038800 193 DRTMFLTFSRGFP--V------TRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFR 264 (280)
Q Consensus 193 ~Rt~FvTFS~G~P--v------se~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~ 264 (280)
++|+|| +|.| + +++|++++|.+ ||. |+.|.|-+ .++++.+||.|.|.+.+....++..-+- ..
T Consensus 1 ~~~l~V---~nLp~~~~~~~~~t~~~l~~~F~~-~G~-i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng--~~ 71 (81)
T 2krb_A 1 DSVIVV---DNVPQVGPDRLEKLKNVIHKIFSK-FGK-ITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADG--YK 71 (81)
T ss_dssp CCEEEE---ESCCCCCTTTHHHHHHHHHHHHHT-TCC-EEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSS--CC
T ss_pred CCEEEE---eCCCCCcHHHHHHHHHHHHHHHhh-cCC-eEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcC--cc
Confidence 368887 7888 4 56999999986 999 66677654 4678899999999999988887764221 13
Q ss_pred EcCe
Q 038800 265 INGK 268 (280)
Q Consensus 265 Ingk 268 (280)
++|+
T Consensus 72 ~~g~ 75 (81)
T 2krb_A 72 LDKQ 75 (81)
T ss_dssp CSSS
T ss_pred cCCc
Confidence 5676
No 152
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.85 E-value=8.3e-06 Score=66.52 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=62.8
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+.+|+|| +|.| ++++||+++|.+ ||.... +.+.+ ...++...||.|.|.+.+....++. .-...|+
T Consensus 9 ~~~~~~~l~V---~nLp~~~t~~~l~~~f~~-~g~~~~-~~~~~-~~~~~~~g~afV~f~~~~~a~~A~~---l~g~~~~ 79 (175)
T 1fje_B 9 ESTTPFNLFI---GNLNPNKSVAELKVAISE-LFAKND-LAVVD-VRTGTNRKFGYVDFESAEDLEKALE---LTGLKVF 79 (175)
T ss_dssp SCSSSEEEEE---ECCCTTSCHHHHHHHHHH-HHHHHT-CCCCE-EEEETTTTEEEEEESSHHHHHHHHH---GGGEEET
T ss_pred CCCCCcEEEE---eCCCCCCCHHHHHHHHHH-hCCcce-EEEEE-CCCCccccEEEEEECCHHHHHHHHh---cCCCEeC
Confidence 4678899998 8988 899999999997 875433 33333 2457888999999999998888874 2234788
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++...+++
T Consensus 80 g~~l~v~~~~~~~ 92 (175)
T 1fje_B 80 GNEIKLEKPKGRD 92 (175)
T ss_dssp TEEEEEECCCCSS
T ss_pred CeEEEEecCCCcc
Confidence 9999888776643
No 153
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.84 E-value=1.5e-05 Score=64.26 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=47.2
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCC--CCCceEEEEEcchhhHHHHh
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSN--EQPLFARLVLQSVANVDQIL 255 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~--~qplfarivf~s~~~v~~vL 255 (280)
|.||+|| +|.| ++++||+++|.+ ||+ |++|.+-.+..++ +...||.|.|.+.+....++
T Consensus 2 ~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 64 (175)
T 3nmr_A 2 DAIKMFV---GQVPRTWSEKDLRELFEQ-YGA-VYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64 (175)
T ss_dssp CCEEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHH
T ss_pred CceEEEE---eCCCCCCCHHHHHHHHHh-CCC-EEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHH
Confidence 6789998 7988 999999999986 999 5555554424444 78999999999988877664
No 154
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=97.82 E-value=3.5e-05 Score=68.08 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=58.9
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcC--CeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYG--DCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG--dcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+.+|||| ++.| +|++||+++|.+ || .+ +.|.+-.+..+++...||+|.|.+.+....++...+. ..|+|
T Consensus 67 ~~~~lfV---gnL~~~~te~~L~~~F~~-~G~~~v-~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng--~~~~G 139 (229)
T 3q2s_C 67 KRIALYI---GNLTWWTTDEDLTEAVHS-LGVNDI-LEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK--RELHG 139 (229)
T ss_dssp --CEEEE---ESCCTTCCHHHHHHHHHT-TTCCCE-EEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTT--SCBTT
T ss_pred CccEEEE---eCCCCCCCHHHHHHHHHH-HCCcce-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCC--CeECC
Confidence 5667877 7887 999999999975 99 75 4554444356889999999999999988888763221 14789
Q ss_pred eeeEEEeccc
Q 038800 268 KHIWARKYER 277 (280)
Q Consensus 268 k~iWarky~p 277 (280)
+.|-++...|
T Consensus 140 r~l~V~~a~~ 149 (229)
T 3q2s_C 140 QNPVVTPVNK 149 (229)
T ss_dssp BCCEEEECCH
T ss_pred EEeEEEECCC
Confidence 9998876544
No 155
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.82 E-value=2.2e-05 Score=59.50 Aligned_cols=73 Identities=15% Similarity=0.311 Sum_probs=55.6
Q ss_pred eEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcCeeeEE
Q 038800 195 TMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRINGKHIWA 272 (280)
Q Consensus 195 t~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk~iWa 272 (280)
|+|| +|.| ++++||+++|.+ ||. |+.|.+..+ ...||.|.|.+.+....++..-+.. .++|+.+-+
T Consensus 2 ~l~V---~nLp~~~t~~~l~~~F~~-~G~-i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~V 69 (101)
T 2hvz_A 2 KVYV---GNLGTGAGKGELERAFSY-YGP-LRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGK--VICGSRVRV 69 (101)
T ss_dssp EEEE---ECCCSSCSHHHHHHHHHH-HCC-CSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHS--CSSSCCCEE
T ss_pred EEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCC--eECCcEEEE
Confidence 6676 7877 999999999986 998 677877662 6789999999998877776521111 378999888
Q ss_pred EecccCC
Q 038800 273 RKYERRD 279 (280)
Q Consensus 273 rky~pk~ 279 (280)
+...|++
T Consensus 70 ~~a~~~~ 76 (101)
T 2hvz_A 70 ELSTGMP 76 (101)
T ss_dssp EESSSCC
T ss_pred EEccCCC
Confidence 7766554
No 156
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=2.1e-05 Score=61.89 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCCCceEEEEccCCCcC---CHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 190 SEDDRTMFLTFSRGFPV---TRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~Pv---se~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
++..+++|| ++.|- +|+||+++|.. ||. |.+|.|-. .+.||+|.|.+.+....++...+.....|+
T Consensus 12 ~~p~~~l~V---~nLp~~~~te~dL~~lF~~-fG~-V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 12 VETRRVVHI---MDFQRGKNLRYQLLQLVEP-FGV-ISNHLILN------KINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCEEEE---ESCCCSSSHHHHHHTTTGG-GSC-EEEEEECS------SSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCEEEE---eCCCCCcCCHHHHHHHHHh-cCC-EEEEEEEc------CCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 456789998 78775 99999999996 999 55666533 136999999988777666653221234689
Q ss_pred CeeeEEEecc
Q 038800 267 GKHIWARKYE 276 (280)
Q Consensus 267 gk~iWarky~ 276 (280)
||.+.+..-.
T Consensus 81 Gr~l~V~~a~ 90 (102)
T 1x4d_A 81 GKPVRVHLSQ 90 (102)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEECC
Confidence 9999655443
No 157
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.80 E-value=4.9e-05 Score=64.61 Aligned_cols=80 Identities=13% Similarity=0.234 Sum_probs=61.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.++..+|+|| +|.| ++++||+++|.+ ||+ |+.|.+..+. .++...||+|.|.+.+....++...+. ..|+
T Consensus 84 ~~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~-I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng--~~l~ 155 (177)
T 2f3j_A 84 GVETGAKLLV---SNLDFGVSDADIQELFAE-FGT-LKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG--VPLD 155 (177)
T ss_dssp SCTTCEEEEE---ECCCSCCCHHHHHHHHHH-TSC-CSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTT--CBCS
T ss_pred CCCCCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCC--CEEC
Confidence 4556788988 7888 999999999997 998 5677776633 788899999999998887777652221 1578
Q ss_pred CeeeEEEecc
Q 038800 267 GKHIWARKYE 276 (280)
Q Consensus 267 gk~iWarky~ 276 (280)
|+.+-+....
T Consensus 156 Gr~l~V~~a~ 165 (177)
T 2f3j_A 156 GRPMDIQLVA 165 (177)
T ss_dssp SSBCEEEEES
T ss_pred CEEEEEEEec
Confidence 9888665543
No 158
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=3.7e-05 Score=57.51 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=56.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEE--EeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESI--HMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAK 262 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v--~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~K 262 (280)
+...+++|| +|.| ++++||+++|.+ ||. |+.+ .+.+ ..++. |+|.|.+.+....++ +|.
T Consensus 12 ~~~~~~l~V---~nlp~~~t~~~l~~~F~~-~G~-v~~~~~i~~~-~~~~~----afV~f~~~~~a~~Ai~~l~g~---- 77 (96)
T 2e44_A 12 RQRIRKLQI---RNIPPHLQWEVLDSLLVQ-YGV-VESCEQVNTD-SETAV----VNVTYSSKDQARQALDKLNGF---- 77 (96)
T ss_dssp CCSCCCEEE---EEECSSSCHHHHHHHHHH-HSC-EEEEEEECCS-SSSEE----EEEEESSHHHHHHHHHHHTTC----
T ss_pred CCCCCEEEE---EcCCCCCCHHHHHHHHHh-cCC-eEEEEEeecC-CCCCE----EEEEECCHHHHHHHHHHhCCC----
Confidence 345689988 7877 999999999996 999 5555 3433 22232 999999988776655 453
Q ss_pred EEEcCeeeEEEecccCC
Q 038800 263 FRINGKHIWARKYERRD 279 (280)
Q Consensus 263 f~Ingk~iWarky~pk~ 279 (280)
.|+|+.+-+....|+.
T Consensus 78 -~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 78 -QLENFTLKVAYIPDEM 93 (96)
T ss_dssp -BCSSCBCEEEECCCCC
T ss_pred -EECCcEEEEEEcCccc
Confidence 4789999999888874
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.73 E-value=7.1e-05 Score=64.05 Aligned_cols=76 Identities=9% Similarity=0.364 Sum_probs=59.1
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEEEc
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFRIN 266 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~In 266 (280)
..+++|| +|.| ++++||+++|.. ||++++.-.+.+ .+....||+|.|.+.+....++ +|. .|+
T Consensus 102 ~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d---~~~~~g~~fV~f~~~~~a~~Ai~~lng~-----~~~ 169 (213)
T 4f02_A 102 GVGNIFI---KNLDKSIDNKALYDTFSA-FGNILSCKVVCD---ENGSKGYGFVHFETQEAAERAIEKMNGM-----LLN 169 (213)
T ss_dssp CTTEEEE---ESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE---TTEEEEEEEEEESSHHHHHHHHHHHTTC-----EET
T ss_pred ccccceE---CCcccccHHHHHHHHHhh-cCCeEEEEeecc---CCCCceEEEEEeCCHHHHHHHHHHhCCC-----EEC
Confidence 4568887 7877 999999999986 999555444444 2446899999999988877765 453 589
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.|-+..+.||+
T Consensus 170 g~~i~V~~a~~~~ 182 (213)
T 4f02_A 170 DRKVFVGRFKSRK 182 (213)
T ss_dssp TEECEEEECCCHH
T ss_pred CEEEEEEEcCCCc
Confidence 9999999888763
No 160
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.73 E-value=0.0001 Score=58.67 Aligned_cols=78 Identities=10% Similarity=0.107 Sum_probs=57.3
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
|....++|| +|.| ++++|++++|.+ ||.-|..+.+.. .+..+||+|.|.+.+..+.++...+ ...++|
T Consensus 25 p~~~~~l~V---gnLp~~~te~dL~~~F~~-~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~ln--g~~l~G 94 (111)
T 2jvr_A 25 PAKRYRITM---KNLPEGCSWQDLKDLARE-NSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLN--NIEFRG 94 (111)
T ss_dssp CCCCEEEEE---ECSSCCCCHHHHHHHHHH-HTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTT--TEEETT
T ss_pred CCCCCEEEE---ECCCCCCCHHHHHHHHHH-hCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcC--CCEECC
Confidence 445577877 8988 999999999997 993366666632 3577899999999888776664211 126899
Q ss_pred eeeEEEeccc
Q 038800 268 KHIWARKYER 277 (280)
Q Consensus 268 k~iWarky~p 277 (280)
+.+-++.-.+
T Consensus 95 r~i~V~~a~~ 104 (111)
T 2jvr_A 95 SVITVERDDN 104 (111)
T ss_dssp EEEEEEESCC
T ss_pred eEEEEEECCC
Confidence 9998776543
No 161
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.70 E-value=5.6e-05 Score=60.92 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=57.9
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeee-------EEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCce
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVE-------SIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRI 260 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve-------~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~ 260 (280)
....+++|| +|.| +++++|+++|.. ||.+.. .+.+.+ .++...||+|.|.+.+....++...+.
T Consensus 42 ~~~~~~l~V---~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~~---~g~~~g~afV~f~~~~~A~~Ai~~lng 114 (143)
T 3egn_A 42 GEPNCRIYV---KNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLMK---EGRMKGQAFIGLPNEKAAAKALKEANG 114 (143)
T ss_dssp CSCCSEEEE---EEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEEE---ETTTEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEecc---CCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 445578988 7877 999999999986 997543 244433 478899999999998887776542111
Q ss_pred eEEEEcCeeeEEEecccC
Q 038800 261 AKFRINGKHIWARKYERR 278 (280)
Q Consensus 261 ~Kf~Ingk~iWarky~pk 278 (280)
..|+|+.+-+....++
T Consensus 115 --~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 115 --YVLFGKPMVVQFARSA 130 (143)
T ss_dssp --BEETTEECEEEECCCS
T ss_pred --CEeCCcEEEEEECCCC
Confidence 2479999877665443
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.69 E-value=9.8e-05 Score=60.96 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=55.7
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcC---C-------eeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCC
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYG---D-------CVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGR 258 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG---d-------cve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~ 258 (280)
+..||+|| +|.| ++++||+++|.+ || . -|.++.+ ++...||+|.|.+.+....+|. .
T Consensus 2 ~~~~~l~V---~nLp~~~te~~l~~~F~~-~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~-l 70 (198)
T 2yh0_A 2 AMARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMA-F 70 (198)
T ss_dssp --CCEEEE---ESCCTTCCHHHHHHHHHH-HHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGG-G
T ss_pred CceeEEEE---cCCCCCCCHHHHHHHHHH-HHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHH-h
Confidence 35689998 8988 999999999997 85 2 3555555 3457899999999999888883 2
Q ss_pred ceeEEEEcCeeeEEEecccC
Q 038800 259 RIAKFRINGKHIWARKYERR 278 (280)
Q Consensus 259 ~~~Kf~Ingk~iWarky~pk 278 (280)
+ ...|+|+.+-++...++
T Consensus 71 ~--g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 71 D--GIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp T--TEEETTEEEEEECCCCC
T ss_pred c--CCEEcCceEEEeCCCCC
Confidence 2 23589999987765443
No 163
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.69 E-value=0.00023 Score=57.76 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=53.8
Q ss_pred CCceEEEEccCCCc--CCHHHHH----HHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeE
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVK----ELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAK 262 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~----~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~K 262 (280)
..+|+|| +|.| +++++++ ++|.+ ||++ ++|.+.+ +++..+||+|.|.+.+....++ +|.
T Consensus 28 p~~~LfV---~nL~~~~~e~~L~~~L~~~F~~-~G~I-~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~---- 95 (127)
T 2a3j_A 28 PSQVVLI---TNINPEVPKEKLQALLYALASS-QGDI-LDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGY---- 95 (127)
T ss_dssp CCSEEEE---ESCCTTSCHHHHHHHHHHHHHH-HSCE-EEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTC----
T ss_pred CCCEEEE---eCCCCCCCHHHHHHHHHHHhcc-CCCe-EEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCC----
Confidence 4689998 7877 8999876 68986 9995 5566644 4678899999999877766554 564
Q ss_pred EEEcCeeeEEEeccc
Q 038800 263 FRINGKHIWARKYER 277 (280)
Q Consensus 263 f~Ingk~iWarky~p 277 (280)
.|+|+.+-+..-.+
T Consensus 96 -~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 96 -PFQGNPLVITFSET 109 (127)
T ss_dssp -CCTTSCCEEEECCC
T ss_pred -EeCCCEEEEEEccC
Confidence 47888886554443
No 164
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.67 E-value=0.00013 Score=59.40 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=62.0
Q ss_pred CCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 189 ASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.....+++|| +|.| ++++||+++|.+ ||++ ..+ . ..++...||.|.|.+.+....++..-+ ...|+
T Consensus 95 ~~~~~~~l~v---~nlp~~~t~~~l~~~F~~-~g~v-~~~---~--~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~ 162 (175)
T 1fje_B 95 KVRAARTLLA---KNLSFNITEDELKEVFED-ALEI-RLV---S--QDGKSKGIAYIEFKSEADAEKNLEEKQ--GAEID 162 (175)
T ss_dssp TTGGGGEEEE---ESCCSSCCHHHHHHHCTT-CSEE-EEE---C--SSSSCCSEEEEECSSHHHHHHHHHHHT--EEEET
T ss_pred ccccCCEEEE---eCCCCCCCHHHHHHHHHh-cCeE-EEe---c--CCCCCceEEEEEECCHHHHHHHHHHhC--CCEEC
Confidence 3456789988 7877 999999999997 9974 344 2 357889999999999998888876322 14789
Q ss_pred CeeeEEEecccCC
Q 038800 267 GKHIWARKYERRD 279 (280)
Q Consensus 267 gk~iWarky~pk~ 279 (280)
|+.+-++-..||+
T Consensus 163 g~~i~v~~a~~k~ 175 (175)
T 1fje_B 163 GRSVSLYYTGEKG 175 (175)
T ss_dssp TEEEEEEECSSCC
T ss_pred CeEEEEEecCCCC
Confidence 9999998887874
No 165
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.66 E-value=4.5e-05 Score=61.24 Aligned_cols=62 Identities=16% Similarity=0.363 Sum_probs=49.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS 256 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~ 256 (280)
+...+++|| +|.| ++++||+++|.+ ||+ |+.+.+..+...+++..||.|.|.+.+....++.
T Consensus 86 ~~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 86 SIKDTNLYV---TNLPRTITDDQLDTIFGK-YGS-IVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp TTTTCEEEE---ESCCTTCCHHHHHHHHTS-SSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cCCCCCEEE---eCCCCCCCHHHHHHhhhc-CCc-EEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 445688988 6877 999999999986 998 6667666644578888999999999888777654
No 166
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.66 E-value=0.00022 Score=68.93 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=61.1
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
....+|||| +|.| +|+++|.++|.. ||.+ +.|.|-.+..++....||+|.|.+.+.+..+|...+- ..|+|
T Consensus 99 ~~~~~~lfV---~nL~~~~te~~L~~~F~~-~G~I-~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng--~~i~g 171 (437)
T 3pgw_S 99 GDAFKTLFV---ARVNYDTTESKLRREFEV-YGPI-KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG--KKIDG 171 (437)
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHH-cCCe-eEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC--CEECC
Confidence 445678988 7877 999999999997 9995 4555443246788999999999999888877743221 25799
Q ss_pred eeeEEEecccC
Q 038800 268 KHIWARKYERR 278 (280)
Q Consensus 268 k~iWarky~pk 278 (280)
+.|-+..-.|+
T Consensus 172 r~i~V~~a~~~ 182 (437)
T 3pgw_S 172 RRVLVDVERGR 182 (437)
T ss_pred EEEEEEEeCCC
Confidence 99877655543
No 167
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.66 E-value=0.00012 Score=59.03 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=56.2
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhc----CC------eeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCC
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMY----GD------CVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGR 258 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~y----Gd------cve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~ 258 (280)
++.||+|| +|.| ++++||+++|.+ | |- .|.++.+.. ...||.|.|.+++....++. .
T Consensus 2 r~~~~l~V---~nLp~~~t~~~l~~~F~~-~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~-~ 70 (172)
T 2g4b_A 2 GSARRLYV---GNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMA-F 70 (172)
T ss_dssp CGGGEEEE---ESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGG-G
T ss_pred CcccEEEE---cCCCcccCHHHHHHHHHH-HhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHH-h
Confidence 46799999 7888 999999999997 7 51 455665533 47899999999999888873 2
Q ss_pred ceeEEEEcCeeeEEEeccc
Q 038800 259 RIAKFRINGKHIWARKYER 277 (280)
Q Consensus 259 ~~~Kf~Ingk~iWarky~p 277 (280)
+ ...++|+.+.++.-.+
T Consensus 71 ~--~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 71 D--GIIFQGQSLKIRRPHD 87 (172)
T ss_dssp T--TCEETTEECEEECCSS
T ss_pred C--CcEecCceeeecCCcc
Confidence 2 1258999998876443
No 168
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.66 E-value=0.00018 Score=63.56 Aligned_cols=83 Identities=14% Similarity=0.293 Sum_probs=63.0
Q ss_pred CCCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCeeeEEEeeccCC-CCCCCceEEEEEcchhhHHHHhCCCceeEEE
Q 038800 189 ASEDDRTMFLTFSRGFP---VTRDEVKELFTRMYGDCVESIHMQENVP-SNEQPLFARLVLQSVANVDQILSGRRIAKFR 264 (280)
Q Consensus 189 ~~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcve~v~m~~~~~-~~~qplfarivf~s~~~v~~vL~g~~~~Kf~ 264 (280)
.....+++|| +|.| +++++|+++|.+ ||. |+.|.+-.+.. ++++..||.|.|.+.+....++ .-+. ..
T Consensus 206 ~~~~~~~l~v---~nlp~~~~t~~~l~~~F~~-~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g--~~ 277 (292)
T 2ghp_A 206 ATLEGREIMI---RNLSTELLDENLLRESFEG-FGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNR--SL 277 (292)
T ss_dssp -CCTTTEEEE---EEECTTTCCHHHHHHHHGG-GSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTT--EE
T ss_pred cCCCCceEEE---ECCCcccCCHHHHHHHHhc-cCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcC--CE
Confidence 3456789988 6777 899999999996 998 66677765222 3889999999999988877776 3222 35
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-+....||.
T Consensus 278 ~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 278 LGNREISVSLADKKP 292 (292)
T ss_dssp ETTEEEEEEECCCCC
T ss_pred ECCcEEEEEEecCCC
Confidence 899999998888874
No 169
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=0.00016 Score=56.31 Aligned_cols=61 Identities=15% Similarity=0.391 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEEEcCeeeEEEecccCC
Q 038800 208 RDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFRINGKHIWARKYERRD 279 (280)
Q Consensus 208 e~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~Ingk~iWarky~pk~ 279 (280)
++||+++|.+ ||. |+.|.|.+ ....+||+|.|.+.+....++ +|. .++||.+-+..+.|+.
T Consensus 40 e~~l~~~f~~-~G~-v~~v~i~~----~~~~G~afV~f~~~~~A~~Ai~~lng~-----~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 40 REDLRVECSK-FGQ-IRKLLLFD----RHPDGVASVSFRDPEEADYCIQTLDGR-----WFGGRQITAQAWDGTT 103 (112)
T ss_dssp HHHHHHHGGG-TSC-CSEEEEET----TCTTCEEEEECSCHHHHHHHHHHSTTC-----EETTEECEEEECCSCC
T ss_pred HHHHHHHHHc-cCC-EeEEEEec----CCCCEEEEEEECCHHHHHHHHHHcCCC-----EECCcEEEEEEeCCCC
Confidence 6899999985 998 55667744 237899999999988766655 553 5799999999888864
No 170
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00011 Score=55.36 Aligned_cols=71 Identities=15% Similarity=0.367 Sum_probs=52.9
Q ss_pred CCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCceeEE
Q 038800 190 SEDDRTMFLTFSRGFP---VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRIAKF 263 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~~Kf 263 (280)
.++.+|+|| +|.| ++++||+++|.+ ||. |+.|.+. ..||.|.|.+.+....++. |.
T Consensus 7 ~~~~~~l~V---~nlp~~~~t~~~l~~~F~~-~G~-v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~----- 68 (96)
T 2kvi_A 7 IPPKSRLFI---GNLPLKNVSKEDLFRIFSP-YGH-IMQINIK--------NAFGFIQFDNPQSVRDAIECESQE----- 68 (96)
T ss_dssp --CCEEEEE---ESSTTSCCCHHHHHHHHTT-TCC-CCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCS-----
T ss_pred CCCCCEEEE---eCCCcccCCHHHHHHHHHh-cCC-EEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC-----
Confidence 456789998 6766 699999999997 999 6677773 4699999999888776654 53
Q ss_pred EEcCeeeEEEecccC
Q 038800 264 RINGKHIWARKYERR 278 (280)
Q Consensus 264 ~Ingk~iWarky~pk 278 (280)
.++|+.+-++...++
T Consensus 69 ~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 69 MNFGKKLILEVSSSN 83 (96)
T ss_dssp SCBTTTBCEEEEECC
T ss_pred eeCCcEEEEEEcCcC
Confidence 367888866555443
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.60 E-value=0.00054 Score=60.22 Aligned_cols=70 Identities=11% Similarity=0.229 Sum_probs=50.8
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc-
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN- 266 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In- 266 (280)
.+..+|+|| +|.| ++++||+++|.+ ||+ |++|.+-.. + ..||+|.|.+.+....++..-+- ..|+
T Consensus 204 ~~~~~~l~v---~nl~~~~~~~~l~~~F~~-~G~-i~~v~~~~~----~-~g~afV~f~~~~~A~~A~~~l~g--~~~~~ 271 (282)
T 3pgw_A 204 NPPNHILFL---TNLPEETNELMLSMLFNQ-FPG-FKEVRLVPG----R-HDIAFVEFDNEVQAGAARDALQG--FKITQ 271 (282)
T ss_pred CCCCCEEEE---eCCCCcCCHHHHHHHHHh-cCC-eEEEEEecC----C-CcEEEEEeCCHHHHHHHHHHcCC--cEeCC
Confidence 345788988 7877 999999999996 999 556666441 1 46999999998887776553221 3566
Q ss_pred CeeeE
Q 038800 267 GKHIW 271 (280)
Q Consensus 267 gk~iW 271 (280)
|+.+-
T Consensus 272 g~~l~ 276 (282)
T 3pgw_A 272 NNAMK 276 (282)
T ss_pred CCEEE
Confidence 88773
No 172
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.60 E-value=9.4e-05 Score=65.21 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=61.5
Q ss_pred CCCceEEEEccCCCc--C-CHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEE
Q 038800 191 EDDRTMFLTFSRGFP--V-TRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFR 264 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--v-se~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~ 264 (280)
...+++|| +|.| + ++++|+++|.. ||. |+.|.+.. ...+++..||.|.|.+.+....++ +|. .
T Consensus 182 ~~~~~l~v---~nlp~~~~~~~~l~~~f~~-~G~-i~~v~i~~-~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-----~ 250 (284)
T 3smz_A 182 LHSRCLCV---DRLPPGFNDVDALCRALSA-VHS-PTFCQLAC-GQDGQLKGFAVLEYETAEMAEEAQQQADGL-----S 250 (284)
T ss_dssp TSCSEEEE---ECCCTTCCCHHHHHHHTCS-SSC-CSEEEEEE-CSSCCEEEEEEEECSSHHHHHHHHHHHTTC-----E
T ss_pred CCccEEEE---ecCCcccCCHHHHHHHhhC-CCC-eEEEEEEE-CCCCCcccEEEEEeCCHHHHHHHHHHhCCC-----c
Confidence 45688887 8888 5 89999999996 998 55555544 246888999999999988877665 453 4
Q ss_pred EcCeeeEEEecccCC
Q 038800 265 INGKHIWARKYERRD 279 (280)
Q Consensus 265 Ingk~iWarky~pk~ 279 (280)
|+|+.+-+....|+.
T Consensus 251 ~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 251 LGGSHLRVSFCAPGP 265 (284)
T ss_dssp ETTEECEEEECCSSS
T ss_pred cCCeEEEEEEecCCC
Confidence 699999999888875
No 173
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.59 E-value=0.00012 Score=57.16 Aligned_cols=67 Identities=16% Similarity=0.367 Sum_probs=51.2
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHH---hCCCceeEEEEc
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQI---LSGRRIAKFRIN 266 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~v---L~g~~~~Kf~In 266 (280)
+.+++|| ++.| ++++||+++|.+ ||. |++|.|-. ...||+|.|.+.+....+ |+|.. ++
T Consensus 9 ~~~~l~V---~nLp~~~te~~L~~~F~~-~G~-i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~-----~~ 72 (111)
T 1whx_A 9 SKTVILA---KNLPAGTLAAEIQETFSR-FGS-LGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSK-----FH 72 (111)
T ss_dssp EEEEEEE---ESCCTTCCHHHHHHHHHT-TSC-EEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCB-----SS
T ss_pred CCCEEEE---eCCCCCCCHHHHHHHHHh-cCC-EEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCE-----EC
Confidence 4678887 7877 999999999996 999 57777743 456999999998776655 45643 67
Q ss_pred Ceee---EEEe
Q 038800 267 GKHI---WARK 274 (280)
Q Consensus 267 gk~i---Wark 274 (280)
|+++ ||+.
T Consensus 73 g~~l~V~~a~~ 83 (111)
T 1whx_A 73 HVPLYLEWAPI 83 (111)
T ss_dssp SSBCEEEEEET
T ss_pred CeEEEEEECCC
Confidence 8887 5543
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.58 E-value=0.00014 Score=58.59 Aligned_cols=61 Identities=16% Similarity=0.384 Sum_probs=49.6
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS 256 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~ 256 (280)
+...+++|| +|.| ++++||+++|.+ ||+ |++|.+..+ ..++..+||.|.|.+.+....++.
T Consensus 92 ~~~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~-i~~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 92 AVEDRKLFI---GMISKKCTENDIRVMFSS-FGQ-IEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp CGGGSEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHH
T ss_pred cCCCCeEEE---cCCCCcCCHHHHHHHHHh-CCC-EEEEEEEEC-CCCCEEEEEEEEECCHHHHHHHHH
Confidence 446789988 7877 999999999986 999 677777663 457889999999999888776653
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.56 E-value=0.00022 Score=62.75 Aligned_cols=76 Identities=17% Similarity=0.343 Sum_probs=56.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHH----HHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVK----ELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKF 263 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~----~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf 263 (280)
.+..||+|| +|.| ++++||+ ++|.+ ||+ |+.|.+-+ .++...||+|.|.+.+....++..-+. .
T Consensus 6 ~~~~~~l~V---~nlp~~~~~~~l~~~L~~~F~~-~G~-i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g--~ 75 (282)
T 3pgw_A 6 TRPNHTIYI---NNLNEKIKKDELKKSLYAIFSQ-FGQ-ILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG--F 75 (282)
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHHHHHhc-cCC-eEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcC--C
Confidence 345789988 8988 9999977 89975 998 45565544 477889999999999888877642111 3
Q ss_pred EEcCeeeEEEec
Q 038800 264 RINGKHIWARKY 275 (280)
Q Consensus 264 ~Ingk~iWarky 275 (280)
.|+|+.+-++..
T Consensus 76 ~~~g~~l~v~~a 87 (282)
T 3pgw_A 76 PFYDKPMRIQYA 87 (282)
T ss_pred eeCCcEEEEEEe
Confidence 678988866544
No 176
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.52 E-value=3.2e-05 Score=62.11 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=54.4
Q ss_pred CCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 190 SEDDRTMFLTFSRGFP---VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+..+++|| ++.| ++++||+++|.+ ||. |.+|.|-+ ...||+|.|.+.+....++...+.-...|+
T Consensus 22 ~~p~~~l~V---~NLp~~~~te~~L~~lF~~-fG~-V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~ 90 (112)
T 1x4f_A 22 QELGRVIHL---SNLPHSGYSDSAVLKLAEP-YGK-IKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQ 90 (112)
T ss_dssp SCCCCEEEE---ESCCCSSCCSHHHHTTTTT-TSC-CSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCCEEEE---eCCCCccCCHHHHHHHHHh-cCC-EEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 334689988 7766 689999999986 999 55666633 368999999987776665542111123578
Q ss_pred CeeeEEEecccC
Q 038800 267 GKHIWARKYERR 278 (280)
Q Consensus 267 gk~iWarky~pk 278 (280)
||.+.+..-.++
T Consensus 91 Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 91 GRCVKVDLSEKY 102 (112)
T ss_dssp SSCCEEEEECSC
T ss_pred CEEEEEEECccc
Confidence 998866655444
No 177
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.51 E-value=0.00024 Score=62.56 Aligned_cols=78 Identities=10% Similarity=0.227 Sum_probs=61.4
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEEE
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFRI 265 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~I 265 (280)
..++++|| +|.| ++++||+++|.. ||. |+.+.+-.+..+++..+||.|.|.+.+....++ +|. .|
T Consensus 93 ~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~-----~~ 162 (284)
T 3smz_A 93 PTDALLCV---ANLPPSLTQQQFEELVRP-FGS-LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK-----PL 162 (284)
T ss_dssp CCSCEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----EE
T ss_pred CCCCEEEE---cCCCCcCCHHHHHHHHHh-cCC-eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC-----Ee
Confidence 34578888 7877 999999999997 999 566654443567889999999999998877776 452 67
Q ss_pred cCeeeEEEecccC
Q 038800 266 NGKHIWARKYERR 278 (280)
Q Consensus 266 ngk~iWarky~pk 278 (280)
+|+.+-+....|+
T Consensus 163 ~g~~i~v~~a~~~ 175 (284)
T 3smz_A 163 GPRTLYVHWTDAG 175 (284)
T ss_dssp TTEECEEEECCGG
T ss_pred CCcEEEEEECCCC
Confidence 9999988776654
No 178
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.48 E-value=0.00016 Score=62.52 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=57.9
Q ss_pred CCCCCCCceEEEEccCCCc---CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC---CCce
Q 038800 187 NNASEDDRTMFLTFSRGFP---VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS---GRRI 260 (280)
Q Consensus 187 ~~~~~d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~---g~~~ 260 (280)
...+.+.+|+|| +|.| ++++||+++|.+ ||. |+.|.+-.+. ..||+|.|.+.+....++. |.
T Consensus 28 ~~~~~~~~~l~V---~nLp~~~~te~~L~~~F~~-~G~-i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~-- 95 (229)
T 2adc_A 28 GLAGAGNSVLLV---SNLNPERVTPQSLFILFGV-YGD-VQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-- 95 (229)
T ss_dssp GGGCCCCSEEEE---ESCCTTTCCHHHHHHHHHH-HTC-EEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTC--
T ss_pred CCCCCCCCEEEE---eCCCcccCCHHHHHHHHHh-CCC-eEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCC--
Confidence 344667899999 7876 699999999986 999 6677665421 6799999999988777664 53
Q ss_pred eEEEEcCeeeEEEeccc
Q 038800 261 AKFRINGKHIWARKYER 277 (280)
Q Consensus 261 ~Kf~Ingk~iWarky~p 277 (280)
.++|+.+-+....+
T Consensus 96 ---~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 96 ---KLHGKPIRITLSKH 109 (229)
T ss_dssp ---BCSSSBCEEECCSC
T ss_pred ---eECCeEEEEEEecC
Confidence 46899887765543
No 179
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.45 E-value=0.00032 Score=55.84 Aligned_cols=70 Identities=17% Similarity=0.416 Sum_probs=53.2
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEE
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFR 264 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~ 264 (280)
+...+++|| +|.| ++++||+++|.+ ||+ |+.+.+..+...++...||.|.|.+.+....++ +|. .
T Consensus 85 ~~~~~~l~v---~nl~~~~t~~~l~~~f~~-~G~-i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-----~ 154 (167)
T 1fxl_A 85 SIRDANLYV---SGLPKTMTQKELEQLFSQ-YGR-IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-----K 154 (167)
T ss_dssp GGTTCEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----C
T ss_pred cCCCCcEEE---CCCCCcCCHHHHHHHHHh-cCC-EeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-----c
Confidence 345678888 7877 999999999996 998 555665553456888999999999988877664 464 3
Q ss_pred EcCee
Q 038800 265 INGKH 269 (280)
Q Consensus 265 Ingk~ 269 (280)
++|+.
T Consensus 155 ~~g~~ 159 (167)
T 1fxl_A 155 PSGAT 159 (167)
T ss_dssp CTTCS
T ss_pred cCCCc
Confidence 67754
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.42 E-value=0.00023 Score=62.90 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=57.7
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcC-CeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYG-DCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG-dcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
.+.+++|| +|.| +++++|+++|.. || . |+.|.+-.+ ..+....||.|.|.+.+....++..-+. ..|+|
T Consensus 115 ~~~~~l~v---~nlp~~~t~~~l~~~f~~-~G~~-i~~v~i~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g 186 (292)
T 2ghp_A 115 LTECTLWM---TNFPPSYTQRNIRDLLQD-INVV-ALSIRLPSL-RFNTSRRFAYIDVTSKEDARYCVEKLNG--LKIEG 186 (292)
T ss_dssp CCSCEEEE---ECCCTTCCHHHHHHHHHH-TTCC-CCEEECC--------CCEEEEECSSHHHHHHHHHHHTT--CEETT
T ss_pred CCCCEEEE---ECCCCCCCHHHHHHHHHH-hCCC-eEEEEEEeC-CCCCcceEEEEEECCHHHHHHHHHHhCC--CEeCC
Confidence 46789988 6877 999999999997 99 6 667777652 3477899999999999887777652111 25799
Q ss_pred eeeEEEecccCC
Q 038800 268 KHIWARKYERRD 279 (280)
Q Consensus 268 k~iWarky~pk~ 279 (280)
+.+-++...|++
T Consensus 187 ~~l~v~~a~~~~ 198 (292)
T 2ghp_A 187 YTLVTKVSNPLE 198 (292)
T ss_dssp EECEEEECCCC-
T ss_pred cEEEEEECCCCc
Confidence 999888766654
No 181
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.38 E-value=0.00051 Score=60.60 Aligned_cols=74 Identities=19% Similarity=0.378 Sum_probs=57.3
Q ss_pred CCCCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeE
Q 038800 188 NASEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAK 262 (280)
Q Consensus 188 ~~~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~K 262 (280)
..+.+.+|+|| +|.| +|+++|+++|.. ||. |..|.+-. ...||.|.|.+.+....++ +|.
T Consensus 17 ~~~~~~~~l~V---~nLp~~~te~~l~~~F~~-~G~-i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~---- 81 (261)
T 3sde_A 17 KTYTQRCRLFV---GNLPTDITEEDFKRLFER-YGE-PSEVFINR------DRGFGFIRLESRTLAEIAKAELDGT---- 81 (261)
T ss_dssp CSSCGGGEEEE---ESCCTTCCHHHHHHHTGG-GCC-CSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTC----
T ss_pred CCCCCCCEEEE---ECCCCCCCHHHHHHHHHh-cCC-EEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCc----
Confidence 34567789999 7888 999999999976 999 66677743 3589999999998887775 453
Q ss_pred EEEcCeeeEEEeccc
Q 038800 263 FRINGKHIWARKYER 277 (280)
Q Consensus 263 f~Ingk~iWarky~p 277 (280)
.|+|+.+-++...|
T Consensus 82 -~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 82 -ILKSRPLRIRFATH 95 (261)
T ss_dssp -EETTEECEEEECCC
T ss_pred -EECCceeEeeeccc
Confidence 47888887765444
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.36 E-value=0.00018 Score=56.32 Aligned_cols=61 Identities=10% Similarity=0.220 Sum_probs=45.6
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEEEc
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFRIN 266 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~In 266 (280)
...++|| .|.| ++++||+++|.+ ||+ |+.+.|..+ .||+|.|.+.+....++ +|. .|+
T Consensus 15 ~~~~l~V---~nLp~~~t~~~l~~~F~~-~G~-v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-----~~~ 77 (115)
T 3beg_B 15 SENRVVV---SGLPPSGSWQDLKDHMRE-AGD-VCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-----KFR 77 (115)
T ss_dssp --CCEEE---EECCSSCCTTHHHHHHGG-GSC-EEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC-----BCC
T ss_pred CCcEEEE---eCCCCCCCHHHHHHHHHh-cCC-eEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC-----EEC
Confidence 4567776 7877 999999999996 998 667777552 89999999987766655 453 367
Q ss_pred Cee
Q 038800 267 GKH 269 (280)
Q Consensus 267 gk~ 269 (280)
|+.
T Consensus 78 gr~ 80 (115)
T 3beg_B 78 SHE 80 (115)
T ss_dssp CTT
T ss_pred CcE
Confidence 766
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.33 E-value=0.00022 Score=62.97 Aligned_cols=81 Identities=9% Similarity=0.136 Sum_probs=57.9
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCC--ceeEEEEcC
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGR--RIAKFRING 267 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~--~~~Kf~Ing 267 (280)
+.+++|| +|.| +|+++|+++|.. ||+ |+.|.+-.+ ..++..+||+|.|.+.+....++..- ....+...|
T Consensus 95 ~~~~l~v---~nl~~~~t~~~l~~~F~~-~G~-i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 168 (261)
T 3sde_A 95 HGAALTV---KNLSPVVSNELLEQAFSQ-FGP-VEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP 168 (261)
T ss_dssp CSSEEEE---ESCCTTCCHHHHHHHHGG-GSC-EEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC
T ss_pred cCCcccc---cCCCCCCCHHHHHHHHHh-cCC-eEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC
Confidence 4568887 7877 999999999975 998 555555542 46888999999999988877776531 222233447
Q ss_pred eeeEEEecccC
Q 038800 268 KHIWARKYERR 278 (280)
Q Consensus 268 k~iWarky~pk 278 (280)
+.+.+....++
T Consensus 169 r~i~v~~~~~~ 179 (261)
T 3sde_A 169 RPVIVEPMEQF 179 (261)
T ss_dssp CBCEEEECCCE
T ss_pred ceEEEeecccc
Confidence 88877665543
No 184
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.14 E-value=0.00052 Score=50.83 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=53.7
Q ss_pred CCCCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEcC
Q 038800 190 SEDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRING 267 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~Ing 267 (280)
+...+++|| +|.| ++++|++++|.+ | + |+.+.+. +...||+|.|.+.+....++...+ ...++|
T Consensus 2 s~~~~~l~V---~nLp~~~t~~~l~~~F~~-~-~-v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~--g~~~~g 67 (88)
T 1wg1_A 2 SSGSSGILV---KNLPQDSNCQEVHDLLKD-Y-D-LKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFH--QYSFRG 67 (88)
T ss_dssp CCCCCCEEE---ESCCSSCCHHHHHHHTCS-S-C-CCCEEEE------GGGTEEEECCSCHHHHHHHHHHHT--TEEETT
T ss_pred CCCCCEEEE---eCCCCCCCHHHHHHHHhh-C-C-eEEEEEe------CCCcEEEEEECCHHHHHHHHHHhC--CCeECC
Confidence 345689988 8888 999999999997 6 5 6677662 456899999999888777755211 125789
Q ss_pred eeeEEEec
Q 038800 268 KHIWARKY 275 (280)
Q Consensus 268 k~iWarky 275 (280)
+.+-++.-
T Consensus 68 ~~l~V~~a 75 (88)
T 1wg1_A 68 KDLIVQLQ 75 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEc
Confidence 98866543
No 185
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.0034 Score=48.97 Aligned_cols=70 Identities=13% Similarity=0.217 Sum_probs=49.5
Q ss_pred CceEEEEccCCC------cCCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCCceeEEEEc
Q 038800 193 DRTMFLTFSRGF------PVTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGRRIAKFRIN 266 (280)
Q Consensus 193 ~Rt~FvTFS~G~------Pvse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~~~~Kf~In 266 (280)
.+.+-|.+.... -+++++|+++|.+ ||+ |+.|.|- ++..+||+|.|.+.+....++.... .+.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~-~G~-V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~----~~~ 78 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQK-YGE-VLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV----GLV 78 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHT-TSC-EEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC----BCS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHh-cCC-EEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC----CCC
Confidence 445667776532 3899999999996 999 5566663 3678899999999888777776422 135
Q ss_pred CeeeEEE
Q 038800 267 GKHIWAR 273 (280)
Q Consensus 267 gk~iWar 273 (280)
|+.+=++
T Consensus 79 g~~l~V~ 85 (100)
T 2d9o_A 79 DNPLKIS 85 (100)
T ss_dssp SSBCEEE
T ss_pred CCeEEEE
Confidence 6665443
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.08 E-value=0.00052 Score=57.09 Aligned_cols=70 Identities=20% Similarity=0.323 Sum_probs=54.2
Q ss_pred CCceEEEEccCCCc---CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEEE
Q 038800 192 DDRTMFLTFSRGFP---VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFRI 265 (280)
Q Consensus 192 d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~I 265 (280)
+.+|+|| +|.| ++++||+++|.+ ||+ |+.|.+..+ ...||.|.|.+.+....++ +|. .+
T Consensus 2 ~~~~l~v---~nlp~~~~~~~~l~~~F~~-~G~-i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~~~-----~~ 66 (198)
T 1qm9_A 2 GNSVLLV---SNLNPERVTPQSLFILFGV-YGD-VQRVKILFN-----KKENALVQMADGNQAQLAMSHLNGH-----KL 66 (198)
T ss_dssp CCCEEEE---ECCCSSSCCHHHHHHHHHT-TCC-CSEEECSTT-----CSSCCEEECTTTHHHHHHHHHHTTC-----CC
T ss_pred CCcEEEE---eCCCcccCCHHHHHHHHHh-cCC-EEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCC-----ee
Confidence 5689988 7876 599999999986 999 777777552 1679999999988877765 453 36
Q ss_pred cCeeeEEEecc
Q 038800 266 NGKHIWARKYE 276 (280)
Q Consensus 266 ngk~iWarky~ 276 (280)
+|+.+-+....
T Consensus 67 ~g~~l~v~~a~ 77 (198)
T 1qm9_A 67 HGKPIRITLSK 77 (198)
T ss_dssp SSCCCEEEECC
T ss_pred cCeEEEEEEec
Confidence 89888776544
No 187
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.01 E-value=0.0018 Score=50.64 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhhcCCeeeEEEeec-cCCCCCCCceEEEEEcchhhHHHH---hCCCceeEEEEcCeeeEEEeccc
Q 038800 207 TRDEVKELFTRMYGDCVESIHMQE-NVPSNEQPLFARLVLQSVANVDQI---LSGRRIAKFRINGKHIWARKYER 277 (280)
Q Consensus 207 se~ei~~fF~~~yGdcve~v~m~~-~~~~~~qplfarivf~s~~~v~~v---L~g~~~~Kf~Ingk~iWarky~p 277 (280)
+++||++.|. +||. |++|.+-. +..+++..+||+|.|.+++..... |+|. .++||.+-+..+.+
T Consensus 26 ~~~dl~~~f~-~~G~-V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-----~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 26 LEVETKEECE-KYGK-VGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-----YFGGRVVKACFYNL 93 (105)
T ss_dssp CHHHHHHHGG-GGSC-EEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEECCH
T ss_pred HHHHHHHHHH-hcCC-EEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-----EECCcEEEEEEcCH
Confidence 6899999997 5999 55555544 223468899999999987764443 5674 47999998876644
No 188
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.99 E-value=0.0024 Score=51.35 Aligned_cols=59 Identities=14% Similarity=0.363 Sum_probs=43.2
Q ss_pred CCceEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHH---hCCCc
Q 038800 192 DDRTMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQI---LSGRR 259 (280)
Q Consensus 192 d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~v---L~g~~ 259 (280)
..+++||. -.|.| ++|++++++|.+ ||. |++|.|.. ...||+|.|.+.+....+ |+|..
T Consensus 24 pt~~L~V~-Ng~L~~~~te~~L~~~F~~-fG~-v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 24 ATQSLVVA-NGGLGNGVSRNQLLPVLEK-CGL-VDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp CCSEEEEE-TCTGGGTCCHHHHHHHHHH-HSC-EEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCEEEEE-CCCCCCCCCHHHHHHHHHh-cCC-eEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 35788875 13444 999999999997 997 67888843 257999999987765544 55643
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=96.98 E-value=0.0026 Score=54.79 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=51.2
Q ss_pred CCceEEEEccCCCc---CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHH---hCCCceeEEEE
Q 038800 192 DDRTMFLTFSRGFP---VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQI---LSGRRIAKFRI 265 (280)
Q Consensus 192 d~Rt~FvTFS~G~P---vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~v---L~g~~~~Kf~I 265 (280)
+.+|+|| ++.| +++++++++|.. ||+ |.+|.+-.+ ..+||.|.|.+.+..+.+ |+|. .+
T Consensus 3 ~~~~l~V---~nL~~~~~~~~~L~~~F~~-~G~-v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~-----~~ 67 (205)
T 3tyt_A 3 DSPVLMV---YGLDQSKMNCDRVFNVFCL-YGN-VEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNN-----FM 67 (205)
T ss_dssp CCSEEEE---ECCCTTTCCHHHHHHHHTT-TSC-EEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTC-----EE
T ss_pred CCCEEEE---eCCCcccCCHHHHHHHHHh-cCC-eEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCC-----EE
Confidence 4578888 7877 999999999986 999 556655331 368999999998776655 5674 47
Q ss_pred cCeeeEEE
Q 038800 266 NGKHIWAR 273 (280)
Q Consensus 266 ngk~iWar 273 (280)
+||.+-+.
T Consensus 68 ~g~~l~v~ 75 (205)
T 3tyt_A 68 FGQKMNVC 75 (205)
T ss_dssp TTEECEEE
T ss_pred CCceEEEE
Confidence 88888665
No 190
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.90 E-value=0.0027 Score=49.35 Aligned_cols=61 Identities=23% Similarity=0.380 Sum_probs=43.5
Q ss_pred CCHHHHHHHH-----------HhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHH---hCCCceeEEEEcCeeeE
Q 038800 206 VTRDEVKELF-----------TRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQI---LSGRRIAKFRINGKHIW 271 (280)
Q Consensus 206 vse~ei~~fF-----------~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~v---L~g~~~~Kf~Ingk~iW 271 (280)
++++|+++.| .++||. |++|.+-++ ..+++.+||.|.|.+++..... |+|. .++||.+-
T Consensus 27 ~~~~~l~~~f~~~~edl~~~f~~~~G~-V~~v~i~~~-~~~~~~G~~fV~f~~~~~A~~A~~~lng~-----~~~Gr~i~ 99 (104)
T 1jmt_A 27 VSDVEMQEHYDEFFEEVFTEMEEKYGE-VEEMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDLNNR-----WFNGQPIH 99 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEECCS-SSSSSEEEEEEEESCHHHHHHHHHHHTTC-----EETTEECC
T ss_pred cCHHHHHHHHHHHHHHHHHHhhccCCc-eEEEEEEeC-CCCCccEEEEEEECCHHHHHHHHHHHCCC-----EECCEEEE
Confidence 6777776666 256999 566666553 3478899999999987765544 5674 48999886
Q ss_pred EE
Q 038800 272 AR 273 (280)
Q Consensus 272 ar 273 (280)
+.
T Consensus 100 v~ 101 (104)
T 1jmt_A 100 AE 101 (104)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 191
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=96.90 E-value=0.0025 Score=54.49 Aligned_cols=63 Identities=19% Similarity=0.373 Sum_probs=43.7
Q ss_pred CCCCceEEEEccCC--CcCCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHH---hCCCc
Q 038800 190 SEDDRTMFLTFSRG--FPVTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQI---LSGRR 259 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G--~Pvse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~v---L~g~~ 259 (280)
++..+.+.| |.++ +++++++++++|.+ ||+ |++|.|-. .+...||+|.|.+.+..... |+|..
T Consensus 41 ~~ps~vl~l-~VgNL~~~vted~L~~~Fs~-fG~-V~~V~i~~----k~~rgfAFVeF~d~~~A~~Ai~~LnG~~ 108 (164)
T 1sjr_A 41 AGQSPVLRI-IVENLFYPVTLDVLHQIFSK-FGT-VLKIITFT----KNNQFQALLQYADPVSAQHAKLSLDGQN 108 (164)
T ss_dssp CCCCCEEEE-EECSCCSCCCHHHHHHHHHH-HSC-EEEEEEEE----SSSCEEEEEEESCHHHHHHHHHHSTTBC
T ss_pred CCCCceEEE-EEeCcCCCCCHHHHHHHHHh-cCC-EEEEEEEe----CCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 444555533 3344 66999999999996 999 67777744 23468999999987765444 55654
No 192
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0014 Score=54.92 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcc
Q 038800 206 VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQS 247 (280)
Q Consensus 206 vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s 247 (280)
+++++|++||.+ ||++.+...+.+ ..++++.+||.|.|.+
T Consensus 18 tte~~Lk~~Fs~-fGeV~~~~li~D-p~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 18 IQDISIKNYFKK-YGEISHFEAFND-PNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCHHHHHHHHHT-TSCCSEEEEEEC-TTTCCEEEEEEEECC-
T ss_pred CCHHHHHHHHHh-cCCeEEEEEEec-CCCCceeeEEEEEECC
Confidence 999999999995 999666666666 5889999999999994
No 193
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.76 E-value=0.021 Score=46.20 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=42.4
Q ss_pred CCCceEEEEccC-CCcCCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCce-EEEEEcchhhHH---HHhCCCc
Q 038800 191 EDDRTMFLTFSR-GFPVTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLF-ARLVLQSVANVD---QILSGRR 259 (280)
Q Consensus 191 ~d~Rt~FvTFS~-G~Pvse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplf-arivf~s~~~v~---~vL~g~~ 259 (280)
+..++++|...+ .++++++++++.|.+ ||. |++|.|-+ . ++| |+|.|.+++... .-|+|..
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~-yG~-V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~ 86 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNP-VGK-VQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGAD 86 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTT-TSC-EEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHh-cCC-EEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 345677654442 367999999999997 999 56666644 1 265 999999866433 3467765
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.67 E-value=0.0017 Score=58.49 Aligned_cols=59 Identities=19% Similarity=0.413 Sum_probs=45.4
Q ss_pred CCCCceEEEEccCCCc--C---------CHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHH---h
Q 038800 190 SEDDRTMFLTFSRGFP--V---------TRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQI---L 255 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~P--v---------se~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~v---L 255 (280)
..+.||||| +|.| + +|++|+++|.+ ||+ |++|.|-. ..+||+|.|.+.+....+ |
T Consensus 131 ~~~~rtLfV---gnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~-I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 131 RKKNKTLYV---GGIDGALNSKHLKPAQIESRIRFVFSR-LGD-IDRIRYVE------SKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp CCCCCEEEE---ECTTGGGTTCCCCHHHHHHHHHHHHHT-TSC-EEEEEEEG------GGTEEEEEESSHHHHHHHHHHH
T ss_pred ccCCceeec---CCCChhhhcccccccCcHHHHHHHHHc-cCC-EEEEEEEC------CCCEEEEEeCCHHHHHHHHHHh
Confidence 457899999 6777 4 69999999997 999 67777744 258999999987765544 5
Q ss_pred CCCc
Q 038800 256 SGRR 259 (280)
Q Consensus 256 ~g~~ 259 (280)
+|..
T Consensus 200 ~g~~ 203 (240)
T 3u1l_A 200 SNQT 203 (240)
T ss_dssp TTCC
T ss_pred CCCE
Confidence 6644
No 195
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=96.48 E-value=0.017 Score=47.40 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=43.5
Q ss_pred CCCCceEEEEccC-CCcCCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCce-EEEEEcchhhHHHH---hCCCc
Q 038800 190 SEDDRTMFLTFSR-GFPVTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLF-ARLVLQSVANVDQI---LSGRR 259 (280)
Q Consensus 190 ~~d~Rt~FvTFS~-G~Pvse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplf-arivf~s~~~v~~v---L~g~~ 259 (280)
+...+.++|...+ .|++|++++++.|.+ ||. |++|.|-+ . ...| |+|.|.+.+..... |+|..
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~-yG~-V~~V~i~~-~----~~gfqAFVef~~~~~A~~Ai~~LnG~~ 90 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSK-FGT-VLKIITFT-K----NNQFQALLQYADPVSAQHAKLSLDGQN 90 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTT-SSC-EEEEEEEE-E----TTEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhC-cCC-EEEEEEEc-C----CCCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 4446677665554 278999999999997 999 55666644 1 2467 99999987664444 67755
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.39 E-value=0.0089 Score=46.50 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhhcCCeeeEEEeeccCCC--CCCCceEEEEEcchhhHHH---HhCCCceeEEEEcCeeeEEEeccc
Q 038800 207 TRDEVKELFTRMYGDCVESIHMQENVPS--NEQPLFARLVLQSVANVDQ---ILSGRRIAKFRINGKHIWARKYER 277 (280)
Q Consensus 207 se~ei~~fF~~~yGdcve~v~m~~~~~~--~~qplfarivf~s~~~v~~---vL~g~~~~Kf~Ingk~iWarky~p 277 (280)
.++||++.|.+ ||. |++|.+-.+..+ ++..+||.|.|.+++.... .|+|. .++||.|-+.-|-+
T Consensus 28 ~~~dl~~~f~k-~G~-V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~-----~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 28 IVEDVRDECSK-YGL-VKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR-----KFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHT-TSC-EEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEEECH
T ss_pred HHHHHHHHHHc-cCC-EEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC-----EeCCCEEEEEEeCH
Confidence 46899999995 999 667777654433 4678999999998766443 46774 47999998876644
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=96.36 E-value=0.0049 Score=51.10 Aligned_cols=72 Identities=21% Similarity=0.340 Sum_probs=53.0
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcC-CeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEE
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYG-DCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFR 264 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG-dcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~ 264 (280)
+..+|+|| +|.| +++++|+++|.+ || . |+.|.+-.. ...||.|.|.+.+....++ +|..
T Consensus 118 ~~~~~l~v---~nl~~~~~~~~l~~~f~~-~G~~-v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~----- 182 (198)
T 1qm9_A 118 PPSATLHL---SNIPPSVSEEDLKVLFSS-NGGV-VKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHD----- 182 (198)
T ss_dssp CCCCEEEE---CCCCTTCCHHHHHHHHHH-TTSC-CCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSC-----
T ss_pred CCccEEEE---eCCCCCCCHHHHHHHHHH-cCCC-ceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCc-----
Confidence 45689988 7887 999999999997 99 6 666666331 2579999999988877664 4543
Q ss_pred Ec-CeeeEEEeccc
Q 038800 265 IN-GKHIWARKYER 277 (280)
Q Consensus 265 In-gk~iWarky~p 277 (280)
|+ |+.+-+.--.|
T Consensus 183 ~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 183 LGENHHLRVSFSKS 196 (198)
T ss_dssp CSSCCSCCEEEECC
T ss_pred cCCCCeEEEEeecc
Confidence 57 88876554433
No 198
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.06 E-value=0.012 Score=50.62 Aligned_cols=72 Identities=21% Similarity=0.342 Sum_probs=53.0
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcC-CeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHh---CCCceeEEE
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYG-DCVESIHMQENVPSNEQPLFARLVLQSVANVDQIL---SGRRIAKFR 264 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yG-dcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL---~g~~~~Kf~ 264 (280)
...+|+|| +|.| ++++||+++|.+ || . |+.|.+.. ....||.|.|.+.+....++ +|..
T Consensus 149 ~~~~~l~V---~nlp~~~t~~~l~~~f~~-~G~~-i~~v~i~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~----- 213 (229)
T 2adc_A 149 PPSATLHL---SNIPPSVSEEDLKVLFSS-NGGV-VKGFKFFQ-----KDRKMALIQMGSVEEAVQALIDLHNHD----- 213 (229)
T ss_dssp CSCSEEEE---ECCCTTCCHHHHHHHHHT-TSCC-EEEEEECS-----SSTTCEEEEESSHHHHHHHHHHHTTCB-----
T ss_pred CCCCEEEE---eCCCccCCHHHHHHHHHH-cCCC-eeEEEEEE-----CCCcEEEEEECCHHHHHHHHHHHCCCc-----
Confidence 44689988 6877 899999999997 99 6 66676633 12579999999988877665 4533
Q ss_pred Ec-CeeeEEEeccc
Q 038800 265 IN-GKHIWARKYER 277 (280)
Q Consensus 265 In-gk~iWarky~p 277 (280)
++ |+.+-+.--.|
T Consensus 214 ~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 214 LGENHHLRVSFSKS 227 (229)
T ss_dssp SSSSCBCEEEECSS
T ss_pred cCCCCeEEEEEecC
Confidence 56 88876654443
No 199
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.93 E-value=0.013 Score=50.33 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=44.6
Q ss_pred CCCceEEEEccCCCc--CCHHHHHHHHHhhcCCe-eeEEEeeccCCCCCCCceEEEEEcchhhHHHHh
Q 038800 191 EDDRTMFLTFSRGFP--VTRDEVKELFTRMYGDC-VESIHMQENVPSNEQPLFARLVLQSVANVDQIL 255 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~P--vse~ei~~fF~~~yGdc-ve~v~m~~~~~~~~qplfarivf~s~~~v~~vL 255 (280)
+..+|+|| ++.| +|+++++++|.. ||.+ +.+|.+-.+ . ++...||.|-|.+.+....++
T Consensus 121 ~p~~~l~v---~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~~~~-~-~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 121 HPSNVLHF---FNAPLEVTEENFFEICDE-LGVKRPTSVKVFSG-K-SERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp CCCSEEEE---EEECTTCCHHHHHHHHHH-HTCCCCSEEEECSC-C-SSSSEEEEEECSSHHHHHHHH
T ss_pred CCcceEEE---eCCCCCCCHHHHHHHHHh-cCCcceEEEEEEcC-C-CCCceEEEEEeCCHHHHHHHH
Confidence 34689988 7877 999999999997 9996 266666442 2 455699999999977655543
No 200
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.92 E-value=0.026 Score=53.33 Aligned_cols=64 Identities=14% Similarity=0.298 Sum_probs=46.8
Q ss_pred CCCCCceEEEEcc-CCCcCCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHH---hCCCce
Q 038800 189 ASEDDRTMFLTFS-RGFPVTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQI---LSGRRI 260 (280)
Q Consensus 189 ~~~d~Rt~FvTFS-~G~Pvse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~v---L~g~~~ 260 (280)
.++-.+++||-=- -.+-+||+++++.|.+ ||. |++|.|-. ...||+|.|.+.+....+ |||...
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~-V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEK-CGL-VDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSC-EEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCC-eEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 4566789999421 1255999999999997 999 67888833 357999999987654444 677653
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=95.40 E-value=0.027 Score=44.93 Aligned_cols=62 Identities=21% Similarity=0.318 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcCCeeeEEEeeccCC----CCCCCceEEEEEcchhhHH---HHhCCCceeEEEEcCeeeEEEecc
Q 038800 208 RDEVKELFTRMYGDCVESIHMQENVP----SNEQPLFARLVLQSVANVD---QILSGRRIAKFRINGKHIWARKYE 276 (280)
Q Consensus 208 e~ei~~fF~~~yGdcve~v~m~~~~~----~~~qplfarivf~s~~~v~---~vL~g~~~~Kf~Ingk~iWarky~ 276 (280)
++||++.|. +||. |++|.+-.+.. .++..+||.|.|.+++... ..|+|. .++||.|-+.-|-
T Consensus 39 eedl~eef~-k~G~-V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-----~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 39 EGEVTEECG-KFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-----WFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHHHT-TTSC-EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-----EETTEECEEEEEC
T ss_pred HHHHHHHHh-ccCC-EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-----EECCcEEEEEEcC
Confidence 799999998 5999 55555544332 2445689999999876543 346785 5799999887664
No 202
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.31 E-value=0.036 Score=43.08 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=48.1
Q ss_pred eEEEEccCCCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHH---HHhCCCceeEEEEcCee
Q 038800 195 TMFLTFSRGFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVD---QILSGRRIAKFRINGKH 269 (280)
Q Consensus 195 t~FvTFS~G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~---~vL~g~~~~Kf~Ingk~ 269 (280)
.+|| ++.+ ++|++++++|.+ ||+ |.++.+.. +.+||+|-|.+++..+ ..||| ..+.||.
T Consensus 9 wL~V---gNL~~~~te~~L~~lF~q-~G~-V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~-----~~l~gr~ 72 (89)
T 2wbr_A 9 WLLL---KNLTAQIDGPTLRTLCMQ-HGP-LVSFHPYL------NQGIALCKYTTREEANKAQMALNN-----CVLANTT 72 (89)
T ss_dssp EEEE---ECCCTTCCCHHHHHHHHH-HSC-EEEEEEET------TTTEEEEEESSHHHHHHHHHHHTT-----EEETTEE
T ss_pred eEEE---eCCCccCCHHHHHHHHHh-hCC-EEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcC-----CEECCcE
Confidence 4554 6655 999999999997 999 56677744 5799999999876544 45666 3588888
Q ss_pred eEEEe
Q 038800 270 IWARK 274 (280)
Q Consensus 270 iWark 274 (280)
|=++.
T Consensus 73 I~V~~ 77 (89)
T 2wbr_A 73 IFAES 77 (89)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 76653
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.22 E-value=0.03 Score=44.52 Aligned_cols=59 Identities=27% Similarity=0.217 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHH---HHhCCCceeEEEEcCeeeEEEecc
Q 038800 207 TRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVD---QILSGRRIAKFRINGKHIWARKYE 276 (280)
Q Consensus 207 se~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~---~vL~g~~~~Kf~Ingk~iWarky~ 276 (280)
-++||++.|. +||. |++|.+.++ ...+||.|.|.+.+... .-|+|. .++||.+-+.-|-
T Consensus 30 l~edl~~~f~-kfG~-V~~v~i~~~----~~~G~~fV~f~~~e~A~~Ai~~lnG~-----~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 30 IKDDVIEECN-KHGG-VIHIYVDKN----SAQGNVYVKCPSIAAAIAAVNALHGR-----WFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHT-TTTC-CSEEEECTT----CTTCCEEEECSSHHHHHHHHHHHTTC-----EETTEECEEEEEC
T ss_pred HHHHHHHHHh-ccCC-EEEEEEecC----CCcEEEEEEECCHHHHHHHHHHhCCC-----EECCEEEEEEEEc
Confidence 4679999997 5999 567777552 25899999999876544 346774 5799999887654
No 204
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.03 E-value=0.24 Score=38.95 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=46.7
Q ss_pred CCce-EEEEccCCCc--CCHHHHH----HHHHhhcC-CeeeEEEeeccCCCCCCCceEEEEEcchhhHHHH---hCCCce
Q 038800 192 DDRT-MFLTFSRGFP--VTRDEVK----ELFTRMYG-DCVESIHMQENVPSNEQPLFARLVLQSVANVDQI---LSGRRI 260 (280)
Q Consensus 192 d~Rt-~FvTFS~G~P--vse~ei~----~fF~~~yG-dcve~v~m~~~~~~~~qplfarivf~s~~~v~~v---L~g~~~ 260 (280)
.+.| +|| ++.| +++++++ ++|.+ || .. .+| ++ +||.|+|.+++...+. |+|..
T Consensus 7 p~~T~lYV---~NL~~~~~~~~lk~~L~~lF~~-yGG~V-l~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~- 70 (96)
T 2diu_A 7 GCHTLLYV---YNLPANKDGKSVSNRLRRLSDN-CGGKV-LSI-------TG---CSAILRFINQDSAERAQKRMENED- 70 (96)
T ss_dssp CSSEEEEE---ESCCTTSCHHHHHHHHHHHHHT-TTCCE-EEC-------CT---TCEEEEESSHHHHHHHHHHHTTCC-
T ss_pred CcceEEEE---eCCCCcCCHHHHHHHHHHHHHH-cCCee-EEE-------ec---CEEEEEECCHHHHHHHHHHhcCCc-
Confidence 3556 656 8888 8988855 89997 95 74 344 12 9999999998887665 45755
Q ss_pred eEEEEcCeeeEEEeccc
Q 038800 261 AKFRINGKHIWARKYER 277 (280)
Q Consensus 261 ~Kf~Ingk~iWarky~p 277 (280)
+.||.|=+.-...
T Consensus 71 ----l~gr~i~v~~A~~ 83 (96)
T 2diu_A 71 ----VFGNRIIVSFTPK 83 (96)
T ss_dssp ----SSSSCCEEESSCC
T ss_pred ----cCCceEEEEecCC
Confidence 7788876654443
No 205
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.22 E-value=0.13 Score=50.63 Aligned_cols=59 Identities=12% Similarity=0.352 Sum_probs=43.9
Q ss_pred CCCceEEEEccCCCcCCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCCC
Q 038800 191 EDDRTMFLTFSRGFPVTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSGR 258 (280)
Q Consensus 191 ~d~Rt~FvTFS~G~Pvse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g~ 258 (280)
...||+||-+++. +++.|+.+||.+ ||+ |.++.|.+. . | .||-|=|.+.+.++.++...
T Consensus 51 qa~rsv~v~~~~~--~~~~~l~~y~~~-~g~-i~~~~~~~~-~-g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 51 QAQRTVLIHCPEK--ISENKFLKYLSQ-FGP-INNHFFYES-F-G---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHHTEEEEEECCC-----CHHHHHHGG-GSC-CCCEEEECS-S-S---EEEEEECC---CCHHHHSSC
T ss_pred HhcceEEEEcCCC--CCHHHHHHHHHh-cCC-cceEEEEcc-C-C---eEEEEEeCCHHHHHHHHhcc
Confidence 3569999987544 999999999975 999 899999883 2 2 99999999999999998863
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=92.15 E-value=0.25 Score=42.03 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=45.6
Q ss_pred CHHHHHHHHHhhcCCeeeEEEeeccC----CCCCCCceEEEEEcchhhHH---HHhCCCceeEEEEcCeeeEEEecc
Q 038800 207 TRDEVKELFTRMYGDCVESIHMQENV----PSNEQPLFARLVLQSVANVD---QILSGRRIAKFRINGKHIWARKYE 276 (280)
Q Consensus 207 se~ei~~fF~~~yGdcve~v~m~~~~----~~~~qplfarivf~s~~~v~---~vL~g~~~~Kf~Ingk~iWarky~ 276 (280)
.++|+++-|. +||+ |++|.+-++. +++++.+||.|.|.+++... .-|+|. .++||.|-+.-|-
T Consensus 142 ~~~dl~~e~~-~~G~-v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-----~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECG-KFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-----WFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHT-TTSC-EEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-----BSSSSBCEEEECC
T ss_pred HHHHHHHHHH-ccCC-eEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-----eECCeEEEEEEcC
Confidence 4678999998 5999 5556654322 34578899999999876544 557785 4799999887653
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.24 E-value=0.17 Score=41.09 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=38.9
Q ss_pred CcCCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcc-hhhHHHHhCCCceeEEEEcCee
Q 038800 204 FPVTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQS-VANVDQILSGRRIAKFRINGKH 269 (280)
Q Consensus 204 ~Pvse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s-~~~v~~vL~g~~~~Kf~Ingk~ 269 (280)
.++|+++|+++|.+ ||+ |..|.+..+ + ..|.|-|.+ +.....++..-+.-++.|+|+.
T Consensus 29 ~~~sredLke~F~~-~G~-V~~Vd~~~g----~--~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 29 DQTCREDLHILFSN-HGE-IKWIDFVRG----A--KEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SSCCHHHHHHHTCS-SCC-EEEEECCTT----C--SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred CcCCHHHHHHHHHh-cCC-EEEEEEecC----C--CEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 34899999999997 999 888888662 1 159999999 5444433332222344666643
No 208
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.86 E-value=4.8 Score=32.05 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=56.9
Q ss_pred CceEEEEccCCCc--CCHHHHHHHHHhh---cCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhCC-CceeEEEEc
Q 038800 193 DRTMFLTFSRGFP--VTRDEVKELFTRM---YGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILSG-RRIAKFRIN 266 (280)
Q Consensus 193 ~Rt~FvTFS~G~P--vse~ei~~fF~~~---yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~g-~~~~Kf~In 266 (280)
.+++-| .|.| ++++-+.-||++. -|.=|++|.-.. .=|.|+|...+.+++||.. ++ .++
T Consensus 8 ~~~I~V---~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H----~L~ 72 (104)
T 2dhx_A 8 GVAVEV---RGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADH----ELH 72 (104)
T ss_dssp CCEEEE---ESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCC----BSS
T ss_pred ccEEEE---ECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcc----eec
Confidence 356655 6777 8888999999984 555567765522 3389999999999999997 66 889
Q ss_pred CeeeEEEecccCCC
Q 038800 267 GKHIWARKYERRDQ 280 (280)
Q Consensus 267 gk~iWarky~pk~~ 280 (280)
|-.+=++-|.|+.+
T Consensus 73 ~~~LsV~P~~~~~~ 86 (104)
T 2dhx_A 73 GAQLSLRPAPPRAP 86 (104)
T ss_dssp SSBCEEEECCCCCC
T ss_pred CeEEEEEcCCCCCc
Confidence 99998998888753
No 209
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=79.68 E-value=2.7 Score=34.79 Aligned_cols=69 Identities=16% Similarity=0.288 Sum_probs=48.0
Q ss_pred CCc-CCHHHHHHHHHhhcCCeeeEEEeeccC--------CCCC-----CCceEEEEEcchhhHHHHhCCCceeEEEEcCe
Q 038800 203 GFP-VTRDEVKELFTRMYGDCVESIHMQENV--------PSNE-----QPLFARLVLQSVANVDQILSGRRIAKFRINGK 268 (280)
Q Consensus 203 G~P-vse~ei~~fF~~~yGdcve~v~m~~~~--------~~~~-----qplfarivf~s~~~v~~vL~g~~~~Kf~Ingk 268 (280)
||| =..+.|.++|++ ||+.+|.+.+.++. ...+ ..-+-+|.|+|....++.|.-..+ .|+|-
T Consensus 14 GFp~~~~~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~---ii~G~ 89 (132)
T 3p3d_A 14 GYPETMANQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA---VFNGV 89 (132)
T ss_dssp CCCGGGHHHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC---EETTE
T ss_pred ecCHHHHHHHHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe---EeCcE
Confidence 888 567788999997 99999987664311 1123 345559999999999999983333 36776
Q ss_pred eeEEEec
Q 038800 269 HIWARKY 275 (280)
Q Consensus 269 ~iWarky 275 (280)
-|=+.-|
T Consensus 90 mIGV~Py 96 (132)
T 3p3d_A 90 LLGVIPY 96 (132)
T ss_dssp ECEEEEC
T ss_pred EEEEEEC
Confidence 5555544
No 210
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=77.31 E-value=0.96 Score=34.68 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHhhcCCee
Q 038800 206 VTRDEVKELFTRMYGDCV 223 (280)
Q Consensus 206 vse~ei~~fF~~~yGdcv 223 (280)
-|.+||++||..+||+-|
T Consensus 60 ~sd~eI~~~~v~RYG~fV 77 (84)
T 2hl7_A 60 KSDGEIVDYMVARYGDFV 77 (84)
T ss_dssp CCHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHhcCCee
Confidence 479999999999999843
No 211
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=76.50 E-value=1 Score=35.00 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHhhcCCe
Q 038800 206 VTRDEVKELFTRMYGDC 222 (280)
Q Consensus 206 vse~ei~~fF~~~yGdc 222 (280)
-|.+||++||..+||+-
T Consensus 57 ~Sd~eI~~~mv~RYGdf 73 (90)
T 2kw0_A 57 KSKKEIVDYMVARYGNF 73 (90)
T ss_dssp CCHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhcCCe
Confidence 57999999999999984
No 212
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.73 E-value=12 Score=28.94 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC--CCceeEEEEcCeeeEEEeccc
Q 038800 209 DEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS--GRRIAKFRINGKHIWARKYER 277 (280)
Q Consensus 209 ~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~--g~~~~Kf~Ingk~iWarky~p 277 (280)
.++.+.|.. ||+ |..|.+..+. |.|.|++.+....+++ |. .|+||.+=++.-.|
T Consensus 30 ~~L~~~F~~-~G~-Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~-----~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFAS-FGE-VILIRFVEDK--------MWVTFLEGSSALNVLSLNGK-----ELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHT-TCC-EEEEEECSSS--------EEEEESSHHHHHHGGGGTTC-----EETTEEEEEEECCC
T ss_pred HHHHHHHHh-CCC-eEEEEEecCC--------EEEEECChHHHHHHHhcCCe-----EeCCeEEEEEeCCC
Confidence 678999997 998 4455654421 8999998887666655 53 58999886665443
No 213
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=65.38 E-value=23 Score=28.65 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCCCceEEEEccCCCcCCHHHHHHHHHhhc-----CCeeeEEEeeccCCCCCCCceEEEEEcchhh---HHHHhCCCcee
Q 038800 190 SEDDRTMFLTFSRGFPVTRDEVKELFTRMY-----GDCVESIHMQENVPSNEQPLFARLVLQSVAN---VDQILSGRRIA 261 (280)
Q Consensus 190 ~~d~Rt~FvTFS~G~Pvse~ei~~fF~~~y-----Gdcve~v~m~~~~~~~~qplfarivf~s~~~---v~~vL~g~~~~ 261 (280)
-+++||+ -.|.=-.-|+.+.|+.|.+. | |+ +..|+..-+.+ . |.|.|.++++ ....|+|..
T Consensus 18 ~~~~rti-aL~~ipDtvndarIr~lve~-~~~i~~g~-i~KI~L~pDH~----G--Aivef~d~~~AgKasLaL~G~e-- 86 (117)
T 2l9w_A 18 KELETLI-CLFPLSDKVSPSLICQFLQE-EIHINEKD-IRKILLVSDFN----G--AIIIFRDSKFAAKMLMILNGSQ-- 86 (117)
T ss_dssp TTTTSCE-EEECCCTTCCHHHHHHHHHH-HTCCCTTT-CSEEEEETTTT----E--EEEECSCHHHHHHHHHHHSSEE--
T ss_pred ccCCcEE-EEecCCCCCCHHHHHHHHhh-hhccCccc-eeEEEEecCCC----c--eEEEEccchhhHHHHhhcCCee--
Confidence 4678888 33333333999999999997 8 98 55666644233 2 8999998776 666788954
Q ss_pred EEEEcCeee
Q 038800 262 KFRINGKHI 270 (280)
Q Consensus 262 Kf~Ingk~i 270 (280)
|+||.+
T Consensus 87 ---f~gr~L 92 (117)
T 2l9w_A 87 ---FQGKVI 92 (117)
T ss_dssp ---ETTEEE
T ss_pred ---ecCeEE
Confidence 567765
No 214
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.39 E-value=13 Score=28.96 Aligned_cols=51 Identities=10% Similarity=0.300 Sum_probs=36.2
Q ss_pred HHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHH--hCCCceeEEEEcCeeeEEEe
Q 038800 209 DEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQI--LSGRRIAKFRINGKHIWARK 274 (280)
Q Consensus 209 ~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~v--L~g~~~~Kf~Ingk~iWark 274 (280)
.++.+.|.. ||. |..|.+..+. |.|+|.+.+....+ |+|. .|+||.+=++.
T Consensus 39 ~~L~~~F~~-~G~-Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~-----~v~Gr~L~V~~ 91 (95)
T 1ufw_A 39 TELMQTLGS-YGT-IVLVRINQGQ--------MLVTFADSHSALSVLDVDGM-----KVKGRAVKISG 91 (95)
T ss_dssp HHHHHHHHH-HSC-CSEEEEETTE--------EEEECSCSHHHHHHHHGGGS-----EETTEEEEEEC
T ss_pred HHHHHHHHH-CCC-EEEEEEecCc--------EEEEEcChHHHHHHHhcCCe-----eeCCeEEEEec
Confidence 568999998 997 4466666532 99999877664444 5564 58898876654
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=54.90 E-value=43 Score=26.95 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=37.3
Q ss_pred CCcC-CHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC
Q 038800 203 GFPV-TRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS 256 (280)
Q Consensus 203 G~Pv-se~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~ 256 (280)
|||- ....|.++|.+ ||+.++..+ .+..-+=+|-|++.....++|.
T Consensus 31 GFp~~~~~~VL~~F~~-~G~Iv~~~~-------~~~~NWihI~Y~s~~~A~rAL~ 77 (119)
T 1wwh_A 31 GFPQASASYILLQFAQ-YGNILKHVM-------SNTGNWMHIRYQSKLQARKALS 77 (119)
T ss_dssp CCCGGGHHHHHHHHHT-TSCEEEEEE-------CSSSSEEEEEESSHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh-hCcEEEecc-------CCCCCeEEEEeCCHHHHHHHHH
Confidence 7884 45677899997 999887775 2346789999999999999998
No 216
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.65 E-value=11 Score=29.71 Aligned_cols=59 Identities=25% Similarity=0.497 Sum_probs=39.5
Q ss_pred cCCCcCCHHHHHHHHHhhcCCe-----------------eeEEEeeccCCCCCCCceEEEEEcch-----hhHHHHhCCC
Q 038800 201 SRGFPVTRDEVKELFTRMYGDC-----------------VESIHMQENVPSNEQPLFARLVLQSV-----ANVDQILSGR 258 (280)
Q Consensus 201 S~G~Pvse~ei~~fF~~~yGdc-----------------ve~v~m~~~~~~~~qplfarivf~s~-----~~v~~vL~g~ 258 (280)
|.|.-.=++.|.++|.++||.- =++|.++- - ++ -|.|+.+ +++.+||...
T Consensus 2 ~~~~~~LReqVe~lFn~kygeALG~~~pV~VPY~~i~~np~av~V~G-L----Pe---gIpFr~P~~ygi~~Le~IL~~~ 73 (99)
T 2dzr_A 2 SSGSSGLREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEG-L----PP---GIPFRKPCTFGSQNLERILAVA 73 (99)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHTCSSCCCCCHHHHHHCSSSEEEES-C----CT---TCCSSCGGGSCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCceeCCHHHHhcCCCeEEEec-C----CC---CCcccCCCcccHHHHHHHHHhc
Confidence 3455556889999999999831 12333333 1 11 1456655 4589999999
Q ss_pred ceeEEEEcC
Q 038800 259 RIAKFRING 267 (280)
Q Consensus 259 ~~~Kf~Ing 267 (280)
...+|.|+-
T Consensus 74 ~~I~F~Ikr 82 (99)
T 2dzr_A 74 DKIKFTVTR 82 (99)
T ss_dssp TTCEEEECS
T ss_pred cCcEEEEec
Confidence 999999974
No 217
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=30.25 E-value=30 Score=25.88 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.4
Q ss_pred CCcCCHHHHHHHHHh
Q 038800 203 GFPVTRDEVKELFTR 217 (280)
Q Consensus 203 G~Pvse~ei~~fF~~ 217 (280)
-+||+||+|+.|+.+
T Consensus 7 ~~~iTEe~VrryL~r 21 (73)
T 1i27_A 7 DVQVTEDAVRRYLTR 21 (73)
T ss_dssp CSSCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHc
Confidence 378999999999996
No 218
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.46 E-value=67 Score=24.76 Aligned_cols=62 Identities=23% Similarity=0.418 Sum_probs=37.2
Q ss_pred CCcCCHHHHHHHHHhhcCCeeeEEEeeccCC-------CCCCCceE-----EEEEcch-----hhHHHHhCCCceeEEEE
Q 038800 203 GFPVTRDEVKELFTRMYGDCVESIHMQENVP-------SNEQPLFA-----RLVLQSV-----ANVDQILSGRRIAKFRI 265 (280)
Q Consensus 203 G~Pvse~ei~~fF~~~yGdcve~v~m~~~~~-------~~~qplfa-----rivf~s~-----~~v~~vL~g~~~~Kf~I 265 (280)
|--.=++.|.++|+.+||. ++.+.+|+. .+....++ -|.||.+ ..+.+||.+....+|.|
T Consensus 4 ~~~~Lr~qV~~Lfn~kyge---ALG~~~pv~VPY~~~~~~p~~v~V~GlP~gi~FR~P~~y~I~~Le~IL~~~~~I~f~i 80 (89)
T 2dn5_A 4 GSSGLREQVKELFNEKYGE---ALGLNRPVLVPYKLIRDSPDAVEVTGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVI 80 (89)
T ss_dssp SCCCHHHHHHHHHHHHHHH---HTTCSSCCCCCHHHHHHCTTSEEEESCCTTCCCCCSSSCCHHHHHHHHTTTTTCEEEE
T ss_pred cchhHHHHHHHHhhhhHHH---HcCCCCceeccHHHHhcCCCeEEEEeCCCCccccCCccccHHHHHHHHhhccCceEEE
Confidence 3334478899999999982 222222111 01111111 1456654 55999999999999987
Q ss_pred cC
Q 038800 266 NG 267 (280)
Q Consensus 266 ng 267 (280)
-.
T Consensus 81 i~ 82 (89)
T 2dn5_A 81 IN 82 (89)
T ss_dssp SS
T ss_pred Ee
Confidence 54
No 219
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=24.90 E-value=40 Score=26.62 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=35.1
Q ss_pred CCc--CCHHHHHHHHHhhcCCeeeEEEeeccCCCCCCCceEEEEEcchhhHHHHhC
Q 038800 203 GFP--VTRDEVKELFTRMYGDCVESIHMQENVPSNEQPLFARLVLQSVANVDQILS 256 (280)
Q Consensus 203 G~P--vse~ei~~fF~~~yGdcve~v~m~~~~~~~~qplfarivf~s~~~v~~vL~ 256 (280)
|+| ....||.+.|.. || .|.+.+ . + -.-|.+||++.+.+..+|+
T Consensus 12 ~FP~ewKt~Di~~lFs~-fg----gv~I~W-i--d--DTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSA-FG----NIQISW-I--D--DTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp ECCTTCCHHHHHHHTTT-SE----EEEEEE-E--E--TTEEEEEEEEECHHHHHHH
T ss_pred eCChhhhhHHHHHHHhc-cC----CEEEEE-E--c--CCeEEEEecCHHHHHHHHH
Confidence 455 788999999997 98 677776 2 1 2349999999999999998
No 220
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=24.19 E-value=39 Score=25.76 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.4
Q ss_pred CCCcCCHHHHHHHHHh
Q 038800 202 RGFPVTRDEVKELFTR 217 (280)
Q Consensus 202 ~G~Pvse~ei~~fF~~ 217 (280)
.-+||+||+|+.|+.+
T Consensus 15 ~~~~iTEe~VRryL~r 30 (82)
T 1nha_A 15 GDVQVTEDAVRRYLTR 30 (82)
T ss_dssp -CCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHh
Confidence 4478999999999996
No 221
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=22.20 E-value=27 Score=25.30 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=16.3
Q ss_pred eeEEEEcCeee----------EEEecccCCC
Q 038800 260 IAKFRINGKHI----------WARKYERRDQ 280 (280)
Q Consensus 260 ~~Kf~Ingk~i----------Warky~pk~~ 280 (280)
.-.++||||.+ |-.+|.|-.|
T Consensus 18 dtsltingkeisyvhdavknkwssrylpytq 48 (73)
T 2jv8_A 18 DTSLTINGKEISYVHDAVKNKWSSRYLPYTQ 48 (73)
T ss_dssp TEEEEETTEECCCCCCSSSCCCCCTTSTTCC
T ss_pred CceeEECCEEeehHHHHHhcccccccCCchh
Confidence 35689999987 8888888543
Done!