BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038801
(662 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290
OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1
Length = 658
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/639 (67%), Positives = 525/639 (82%), Gaps = 12/639 (1%)
Query: 30 LYSFLQPSIFSLKRKSLQQDPPNSPTQQQQQQTLTQDNITSLETNLHKSLLTNNTDEAWK 89
LYSFL+PS+FS K + P SP Q + TLT D +S E+ LH SL + TDEAWK
Sbjct: 24 LYSFLKPSLFS--HKPITLSPSLSPPQNPK--TLTPDQKSSFESTLHDSLNAHYTDEAWK 79
Query: 90 SFKSLTANSLFPSKPVTNSLIAHLSSLQDN-----HNLKRAFASVVYVIEKNPKLLDFQT 144
+F+SLTA S P K + NSLI HLS ++ + H LKRAFAS YVIEK+P LL+F+T
Sbjct: 80 AFRSLTAASSLPEKRLINSLITHLSGVEGSGESISHRLKRAFASAAYVIEKDPILLEFET 139
Query: 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEEC 204
V TLL SM+ A A PA ALVKCMFKNRYF+PF+LWG ++DICR+N + FLKVF+E
Sbjct: 140 VRTLLESMKLAKAAGPALALVKCMFKNRYFVPFDLWGHLVIDICRENGSLAPFLKVFKES 199
Query: 205 CRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY 264
CRI++DE L+FMKP++ A NAALE CC ++S++DAE VIE+M+VLGV+P+E SFGFLAY
Sbjct: 200 CRISVDEKLEFMKPDLVASNAALEACCRQMESLADAENVIESMAVLGVKPDELSFGFLAY 259
Query: 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME 324
LYA KGL+EKI ELE+LM+ FGF+S+ + YS++ISGYVK G+L+S S IL L G E
Sbjct: 260 LYARKGLREKISELENLMDGFGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGG-E 318
Query: 325 QSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLS 384
+S FS ETYCE+VKGF+++ +VK LA +I+EAQKLE S + VD SVGFGII+ACVNLG S
Sbjct: 319 ESSFSVETYCELVKGFIESKSVKSLAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFS 378
Query: 385 DKAHSILDEMNA-CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA 443
DKAHSIL+EM A G SVG+GVYVP LKAYCKE+RTAEATQLV +ISSSGLQLDV +A
Sbjct: 379 DKAHSILEEMIAQGGGSVGIGVYVPILKAYCKEYRTAEATQLVTEISSSGLQLDVEISNA 438
Query: 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP 503
LIEAS+T+QDF SAF+LFRDMRE R+ DLKGSYLTIMTGL+EN RPELMAAFLDEVVEDP
Sbjct: 439 LIEASMTNQDFISAFTLFRDMRENRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDP 498
Query: 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563
RVEV +HDWNSIIHAFCK+GRLEDA+RT RRM+FL++EPN+QTYLSLINGYV+ E+YF+V
Sbjct: 499 RVEVNSHDWNSIIHAFCKSGRLEDARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNV 558
Query: 564 LMMWHEIKRKIST-DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKW 622
L++W+EIK KIS+ + +K + +H LVDAFLYALVKGGFFDA MQVVEKSQEMK+FVDKW
Sbjct: 559 LLLWNEIKGKISSVEAEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKW 618
Query: 623 KYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLN 661
+YKQAFME HKKL++ KLRKRN+KKME+L+AFKNWAGLN
Sbjct: 619 RYKQAFMETHKKLRLPKLRKRNYKKMESLVAFKNWAGLN 657
>sp|Q9CAA5|PP109_ARATH Pentatricopeptide repeat-containing protein At1g68980,
mitochondrial OS=Arabidopsis thaliana GN=At1g68980 PE=2
SV=1
Length = 619
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/626 (61%), Positives = 468/626 (74%), Gaps = 17/626 (2%)
Query: 43 RKSLQQDPPNSPTQQQQQQTLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPS 102
RK+L P +TLT +S E+ LH SL+T++TD+AWK F+S A S P
Sbjct: 3 RKTLTLISLRRPFSSIPSKTLTPHQKSSFESTLHHSLITHDTDQAWKVFRSFAAASSLPD 62
Query: 103 KPVTNSLIAHLSSLQDN-------HNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNA 155
K + NSLI HLSS + H LKRAF S YVIEK+P LL+F+TV T+L SM+ A
Sbjct: 63 KRLLNSLITHLSSFHNTDQNTSLRHRLKRAFVSTTYVIEKDPILLEFETVRTVLESMKLA 122
Query: 156 NTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDF 215
+ PA ALV+CMFKNRYF+PF+LWG L+D+CR+N + AFLKVF E CRIA+DE LDF
Sbjct: 123 KASGPALALVECMFKNRYFVPFDLWGDLLIDVCRENGSLAAFLKVFRESCRIAVDEKLDF 182
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
MKP++ A NAALE CC ++S++DAE +IE+M VLGV+P+E SFGFLAYLYA KGL+EKI
Sbjct: 183 MKPDLVASNAALEACCRQMESLADAENLIESMDVLGVKPDELSFGFLAYLYARKGLREKI 242
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335
ELE LM+ GF+S+ + YSS+ISGYVK G+L+SAS IL L G E S FS+ETYCE
Sbjct: 243 SELEDLMDGLGFASRRILYSSMISGYVKSGDLDSASDVILCSLKGVG-EASSFSEETYCE 301
Query: 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMN 395
+V+GF+++ +V+ LA LIIEAQKLE V SVGFGI++ACV LG S K SILDE+N
Sbjct: 302 LVRGFIESKSVESLAKLIIEAQKLESMSTDVGGSVGFGIVNACVKLGFSGK--SILDELN 359
Query: 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ 455
A G S G+GVYVP LKAYCKE RT+EATQLV +ISSSGLQLDV Y+ +IEAS+T DF
Sbjct: 360 AQGGSGGIGVYVPILKAYCKEGRTSEATQLVTEISSSGLQLDVETYNTMIEASMTKHDFL 419
Query: 456 SAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515
SA +LFRDMRE R+ DLK YLTIMTGL+EN RPELMA F++EV+EDPRVEVK+HDWNSI
Sbjct: 420 SALTLFRDMRETRVADLKRCYLTIMTGLLENQRPELMAEFVEEVMEDPRVEVKSHDWNSI 479
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575
IHAFCK+GRL DAK T RRM FLQ+EPN+QTYLSLINGYV+ E+YF V+++W E K
Sbjct: 480 IHAFCKSGRLGDAKSTFRRMTFLQYEPNNQTYLSLINGYVSCEKYFEVVVIWKEFK---- 535
Query: 576 TDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKL 635
K K EH L DAFL ALVKGGFF +QV+EK QEMK+FVDKW+YK FME K L
Sbjct: 536 ---DKKAKLEHALADAFLNALVKGGFFGTALQVIEKCQEMKIFVDKWRYKATFMETQKNL 592
Query: 636 KVAKLRKRNFKKMEALIAFKNWAGLN 661
++ KLRKR KK+E L AFKNWA +
Sbjct: 593 RLPKLRKRKMKKIEFLDAFKNWARIT 618
>sp|Q9SA60|PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100,
mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2
SV=1
Length = 793
Score = 235 bits (599), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 201/341 (58%), Gaps = 13/341 (3%)
Query: 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388
++E Y ++ K FL++G +K LA +++A+ E S + D S+ +I+AC++LG+ D+AH
Sbjct: 458 TEEIYVKLAKAFLESGKMKELAKFLLKAEH-EDSPVSSDNSMLINVINACISLGMLDQAH 516
Query: 389 SILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS 448
+LDEM G G VY LKAYC ++T E T L+ D +G+QLD Y+ALI++
Sbjct: 517 DLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRDAQKAGIQLDSSCYEALIQSQ 576
Query: 449 ITSQDFQSAFSLFRDMREARIYDLKGS---YLTIMTGLMENHRPELMAAFLDEVVEDPRV 505
+ D A ++F++M+EA+I L+G + ++ G N LM+ L E+ E +
Sbjct: 577 VIQNDTHGALNVFKEMKEAKI--LRGGNQKFEKLLKGCEGNAEAGLMSKLLREIREVQSL 634
Query: 506 EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT-AEQYFSVL 564
+ HDWN++IH F K G ++DA++ L+RM L PN QT+ S++ GY +Y V
Sbjct: 635 DAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSMVTGYAAIGSKYTEVT 694
Query: 565 MMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY 624
+W E+K + +KF+ L+DA LY V+GGFF +VVE ++ +FVDK+KY
Sbjct: 695 ELWGEMKSIAAATS--SMKFDQELLDAVLYTFVRGGFFSRANEVVEMMEKKNMFVDKYKY 752
Query: 625 KQAFMENHK---KLKVAKLRKRN-FKKMEALIAFKNWAGLN 661
+ F++ HK K K K++ + KK EA + FK W GL+
Sbjct: 753 RMLFLKYHKTAYKGKAPKVQSESQLKKREAGLVFKKWLGLS 793
>sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650,
chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2
SV=1
Length = 778
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 170/346 (49%), Gaps = 18/346 (5%)
Query: 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILD 392
Y ++KG+++NG V A ++ ++ + D ++SA VN GL D+A +L
Sbjct: 417 YTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLA 476
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDIS-SSGLQLDVGNYDALIEASITS 451
EM G Y LK YCK+ + A L+ +++ +G++ DV +Y+ +I+ I
Sbjct: 477 EMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILI 536
Query: 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511
D A + F +MR I K SY T+M + +P+L DE++ DPRV+V
Sbjct: 537 DDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIA 596
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571
WN ++ +C+ G +EDA+R + RM F PN TY SL NG A + L++W EIK
Sbjct: 597 WNMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIK 656
Query: 572 RKISTDGQKG------------IKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFV 619
+ + ++ +K + L+D V+ FF ++++ +E +
Sbjct: 657 ERCAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPP 716
Query: 620 DKWKYKQAFMENHKKLKVAKLRK-----RNFKKMEALIAFKNWAGL 660
+K KYK+ ++E H ++ +K R ++ A AFK W GL
Sbjct: 717 NKTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGL 762
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 204 CCRIALDENLDFMK---------PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRP 254
C ++ +D D ++ P++ + N ++GC + + A M G+ P
Sbjct: 498 CKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCIL-IDDSAGALAFFNEMRTRGIAP 556
Query: 255 NESSFGFLAYLYALKGLQEKIVE--LESLMNEFGFSSQMVFYSSLISGYVKLGNLESASR 312
+ S+ L +A+ G Q K+ + +MN+ ++ ++ L+ GY +LG +E A R
Sbjct: 557 TKISYTTLMKAFAMSG-QPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQR 615
Query: 313 TI 314
+
Sbjct: 616 VV 617
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%)
Query: 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432
+++AC NLG +DK + +EM+ C + Y +K + R ++ I
Sbjct: 241 AVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERIIDK 300
Query: 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468
G+++ + +L+ A + D ++A + + MRE R
Sbjct: 301 GIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKR 336
>sp|B3H672|PP317_ARATH Pentatricopeptide repeat-containing protein At4g17616
OS=Arabidopsis thaliana GN=At4g17616 PE=2 SV=1
Length = 674
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 126/602 (20%), Positives = 257/602 (42%), Gaps = 52/602 (8%)
Query: 71 LETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVV 130
L+ L +L + D+AW FK FP + N + LS D L +A
Sbjct: 57 LKKKLETALKDHRVDDAWDVFKDFKRLYGFPESVIMNRFVTVLSYSSDAGWLCKASDLTR 116
Query: 131 YVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRK 190
+++NP +L + L S+ A A ++++ M + Y + ++ ++ + +
Sbjct: 117 LALKQNPGMLSGDVLTKLSLSLARAQMVESACSILRIMLEKGYVLTSDVLRLVVMHMVKT 176
Query: 191 NSNFVAFLKVFEECCRIALDENL--------DFMKPNIYACNAALEGCCYGLQSVSDAEK 242
+ C ++ N+ + +KP+ N L G C ++
Sbjct: 177 EIGTCLASNYLVQVCDRFVEFNVGKRNSSPGNVVKPDTVLFNLVL-GSCVRFGFSLKGQE 235
Query: 243 VIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG-FSSQMV-----FYSS 296
+IE M+ + V + S ++ +Y + G+++ EL G Q++ F+ +
Sbjct: 236 LIELMAKVDVVADAYSIVIMSCIYEMNGMRD---ELRKFKEHIGQVPPQLLGHYQHFFDN 292
Query: 297 LISGYVKLGNLESASRTIL-LCLGG--GNMEQSDFSKETYCEVVKGFLQNGNVKGLANLI 353
L+S K ++ SA R L +C ++E F E L G+ + L
Sbjct: 293 LLSLEFKFDDIGSAGRLALDMCKSKVLVSVENLGFDSEK-----PRVLPVGSHHIRSGLK 347
Query: 354 IEAQKLEPSGIVVDRSVGFGIISACVN-----LGLSDKA----------HSILDEMNACG 398
I + P + D S+G + VN LG+++K H L E++
Sbjct: 348 IH---ISPKLLQRDSSLGVDTEATFVNYSNSKLGITNKTLAKLVYGYKRHDNLPELSKLL 404
Query: 399 CSVGLGVYVPTLKAYCKEHRTAEATQLVM-DISSSGLQLDVGNYDALIEASITSQDFQSA 457
S+G + C EA ++ D++S+G +++ Y ++ S+ ++A
Sbjct: 405 FSLGGSRLCADVIDACVAIGWLEAAHDILDDMNSAGYPMELATYRMVLSGYYKSKMLRNA 464
Query: 458 FSLFRDMREARIYDLKGSYLTIM--TGLMENHRPELMAAFLDEVVEDPRVEVKT--HDWN 513
L + M +A + + + + T ++ EL + E+ +++ + ++ N
Sbjct: 465 EVLLKQMTKAGLITDPSNEIVVSPETEEKDSENTELRDLLVQEINAGKQMKAPSMLYELN 524
Query: 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
S ++ FCKA DA T R++ ++ P Q++ LI+ Y + Y + ++W +IKR
Sbjct: 525 SSLYYFCKAKMQGDALITYRKIPKMKIPPTVQSFWILIDMYSSLGMYREITIVWGDIKRN 584
Query: 574 ISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHK 633
I++ K +K +L++ + ++GG+F+ VM+++ +E ++ D YK +++ HK
Sbjct: 585 IAS---KNLKTTQDLLEKLVVNFLRGGYFERVMELISYMKENDMYNDLTMYKNEYLKLHK 641
Query: 634 KL 635
L
Sbjct: 642 NL 643
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 99.4 bits (246), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 182/429 (42%), Gaps = 53/429 (12%)
Query: 233 GLQSVSDAEK---VIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSS 289
G V+D +K V + + G P ++G L LY G K +E+ +M E G
Sbjct: 458 GYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH 517
Query: 290 QMVFYSSLISGYVKLGNLESA-------------------SRTILLCLGGGNMEQS---- 326
+ YS +I+G+VKL + +A + I G GNM+++
Sbjct: 518 NLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV 577
Query: 327 --------DFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC 378
+ T+ ++ G+ ++G+++ + + G V G+I+
Sbjct: 578 KEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVF---DMMRRCGCVPTVHTFNGLINGL 634
Query: 379 VNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV 438
V +KA ILDEM G S Y ++ Y T +A + + + GL +D+
Sbjct: 635 VEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDI 694
Query: 439 GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM-AAFLD 497
Y+AL++A S QSA ++ ++M I Y ++ G R ++ AA L
Sbjct: 695 FTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWA--RRGDVWEAADLI 752
Query: 498 EVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTA 557
+ ++ V+ H + S I A KAG + A +T+ M L +PN +TY +LI G+ A
Sbjct: 753 QQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARA 812
Query: 558 EQYFSVLMMWHEIKRKISTDGQKGIKFE----HNLVDAFL--YALVKGGFFDAVMQVVEK 611
L + E+K GIK + H L+ + L ++ + + VM + ++
Sbjct: 813 SLPEKALSCYEEMK-------AMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKE 865
Query: 612 SQEMKVFVD 620
E + VD
Sbjct: 866 MVEAGLIVD 874
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 128/306 (41%), Gaps = 10/306 (3%)
Query: 253 RPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASR 312
+P+ + FG + Y +G + E M G + Y+SLI Y +++ A
Sbjct: 306 KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEA-- 363
Query: 313 TILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF 372
L C+ E + S TY +V GF + G+ + EA+++ + ++ S+
Sbjct: 364 --LSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKT---LNASIYG 418
Query: 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432
II A ++A +++ EM G + +Y + Y + + +
Sbjct: 419 KIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKEC 478
Query: 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME-NHRPEL 491
G V Y LI A + R M+E + +Y ++ G ++
Sbjct: 479 GFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANA 538
Query: 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLI 551
A F D V E + +V +N+II AFC G ++ A +T++ M L+ P +T++ +I
Sbjct: 539 FAVFEDMVKEGMKPDVIL--YNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPII 596
Query: 552 NGYVTA 557
+GY +
Sbjct: 597 HGYAKS 602
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
+KP+I+ + + C ++ A + IE M LGV+PN ++ L +A L EK
Sbjct: 760 VKPDIHTYTSFISACSKA-GDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKA 818
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESA 310
+ M G Y L++ + ++ A
Sbjct: 819 LSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEA 853
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 97.8 bits (242), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 13/338 (3%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
PN+ N ++G C L+ + D K++ +M++ G+ PN S+ + +G +++
Sbjct: 238 PNVVTYNTLIDGYC-KLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF 296
Query: 278 LESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV 337
+ + MN G+S V Y++LI GY K GN A L G S TY ++
Sbjct: 297 VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP----SVITYTSLI 352
Query: 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397
+ GN+ + ++ G+ + ++ G ++A+ +L EMN
Sbjct: 353 HSMCKAGNMNRAMEFL---DQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDN 409
Query: 398 GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSA 457
G S + Y + +C + +A ++ D+ GL DV +Y ++ S D A
Sbjct: 410 GFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEA 469
Query: 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD--WNSI 515
+ R+M E I +Y +++ G E R + +E++ RV + + + ++
Sbjct: 470 LRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML---RVGLPPDEFTYTAL 526
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
I+A+C G LE A + M+ P+ TY LING
Sbjct: 527 INAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/402 (21%), Positives = 176/402 (43%), Gaps = 19/402 (4%)
Query: 174 FMPFELWGGFLVDICRKNSNFVAFLK-VFEECCRIALDENLDFMKPNIYACNAALEGCCY 232
FMP L ++D ++ ++F + VF+E L+ + PN++ N + G C+
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKE----MLESQVS---PNVFTYNILIRGFCF 217
Query: 233 GLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYA-LKGLQEKIVELESLMNEFGFSSQM 291
++ A + + M G PN ++ L Y L+ + + L S+ + G +
Sbjct: 218 A-GNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALK-GLEPNL 275
Query: 292 VFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLAN 351
+ Y+ +I+G + G ++ S L N + TY ++KG+ + GN
Sbjct: 276 ISYNVVINGLCREGRMKEVS----FVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFH--QA 329
Query: 352 LIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK 411
L++ A+ L G+ +I + G ++A LD+M G Y +
Sbjct: 330 LVMHAEMLR-HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVD 388
Query: 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYD 471
+ ++ EA +++ +++ +G V Y+ALI + + A ++ DM+E +
Sbjct: 389 GFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSP 448
Query: 472 LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531
SY T+++G ++ + E+VE ++ T ++S+I FC+ R ++A
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKREMVEKG-IKPDTITYSSLIQGFCEQRRTKEACDL 507
Query: 532 LRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
M+ + P++ TY +LIN Y L + +E+ K
Sbjct: 508 YEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/509 (21%), Positives = 193/509 (37%), Gaps = 83/509 (16%)
Query: 83 NTDEAWKSFKSLTANSLFPSKPVTNSLI---AHLSSLQDNHNLKRAFASVVYVIEKNPKL 139
N D A F + P+ N+LI L + D L R+ A + P L
Sbjct: 220 NIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMA----LKGLEPNL 275
Query: 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLK 199
+ + V + G R +F L + M + Y + + + C K NF L
Sbjct: 276 ISYNVV--INGLCREGRMKEVSFVLTE-MNRRGYSLDEVTYNTLIKGYC-KEGNFHQALV 331
Query: 200 VFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSF 259
+ E R L P++ + + C +++ A + ++ M V G+ PNE ++
Sbjct: 332 MHAEMLRHGL-------TPSVITYTSLIHSMCKA-GNMNRAMEFLDQMRVRGLCPNERTY 383
Query: 260 GFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLG 319
L ++ KG + + MN+ GFS +V Y++LI+G+ G +E A +
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVL----- 438
Query: 320 GGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377
+M++ S + +Y V+ GF ++ +V
Sbjct: 439 -EDMKEKGLSPDVVSYSTVLSGFCRSYDV------------------------------- 466
Query: 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD 437
D+A + EM G Y ++ +C++ RT EA L ++ GL D
Sbjct: 467 -------DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519
Query: 438 VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE-----LM 492
Y ALI A D + A L +M E + +Y ++ GL + R L+
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579
Query: 493 AAFLDEVVED-----------PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541
F +E V +E K+ S+I FC G + +A + M+ +
Sbjct: 580 KLFYEESVPSDVTYHTLIENCSNIEFKS--VVSLIKGFCMKGMMTEADQVFESMLGKNHK 637
Query: 542 PNDQTYLSLINGYVTAEQYFSVLMMWHEI 570
P+ Y +I+G+ A ++ E+
Sbjct: 638 PDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 82/176 (46%), Gaps = 2/176 (1%)
Query: 399 CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS-QDFQSA 457
C V+ +K+Y + +A +V + G V +Y+A+++A+I S ++ A
Sbjct: 130 CYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFA 189
Query: 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIH 517
++F++M E+++ +Y ++ G ++ D++ E +N++I
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKM-ETKGCLPNVVTYNTLID 248
Query: 518 AFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
+CK +++D + LR M EPN +Y +ING + V + E+ R+
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR 304
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 2/200 (1%)
Query: 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAE-ATQLVMDISSS 432
++ + L L DKA SI+ A G G+ Y L A + R A + ++ S
Sbjct: 140 VVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM 492
+ +V Y+ LI + + A +LF M +Y T++ G + + +
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN 552
L + +E +N +I+ C+ GR+++ L M + ++ TY +LI
Sbjct: 260 FKLLRSMALKG-LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Query: 553 GYVTAEQYFSVLMMWHEIKR 572
GY + L+M E+ R
Sbjct: 319 GYCKEGNFHQALVMHAEMLR 338
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 100/418 (23%), Positives = 174/418 (41%), Gaps = 97/418 (23%)
Query: 198 LKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQS--VSDAEKVIETMSVLGVRPN 255
L++F++ R+ L KPN+ CN L G S +S A +V + M +GV N
Sbjct: 151 LQIFQKMIRLKL-------KPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLN 203
Query: 256 ESSFGFLAYLYALKG-LQEKIVELESLMNEF----------------------------- 285
+F L Y L+G L++ + LE +++EF
Sbjct: 204 VQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELL 263
Query: 286 ------GFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVV 337
G V Y++L+ GY KLG+L+ A + + L M+Q++ + TY ++
Sbjct: 264 LDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVEL------MKQTNVLPDLCTYNILI 317
Query: 338 KGFLQNGNVKGLANLI--IEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMN 395
G G+++ L+ +++ KL+P + + +I C LGLS +A ++++M
Sbjct: 318 NGLCNAGSMREGLELMDAMKSLKLQPDVVTYNT-----LIDGCFELGLSLEARKLMEQME 372
Query: 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMD-ISSSGLQLDVGNYDALIEASITSQDF 454
G + +LK CKE + T+ V + + G D+ Y LI+A + D
Sbjct: 373 NDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDL 432
Query: 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514
A + R+M + KG +++ T N+
Sbjct: 433 SGALEMMREMGQ------KG------------------------------IKMNTITLNT 456
Query: 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572
I+ A CK +L++A L F ++ TY +LI G+ E+ L MW E+K+
Sbjct: 457 ILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKK 514
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 154/341 (45%), Gaps = 17/341 (4%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGF-LAYLYALKGLQEK 274
++P++ N ++GC + L +A K++E M GV+ N+ + L +L + +
Sbjct: 341 LQPDVVTYNTLIDGC-FELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAV 399
Query: 275 IVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYC 334
+++ L++ GFS +V Y +LI Y+K+G+L S + ++ +G ++ + + T
Sbjct: 400 TRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDL-SGALEMMREMGQKGIKMNTITLNT-- 456
Query: 335 EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394
++ + + NL+ A K G +VD +I +KA + DEM
Sbjct: 457 -ILDALCKERKLDEAHNLLNSAHK---RGFIVDEVTYGTLIMGFFREEKVEKALEMWDEM 512
Query: 395 NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454
+ + + + C +T A + +++ SGL D ++++I
Sbjct: 513 KKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRV 572
Query: 455 QSAFSLFRDMREARIYDLKGSYLT---IMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511
+ AF + E+ + K T ++ GL + E F + ++E+ EV T
Sbjct: 573 EKAFEFYN---ESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEER--EVDTVT 627
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN 552
+N++I AFCK +L++A L M EP+ TY S I+
Sbjct: 628 YNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFIS 668
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Query: 410 LKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI---TSQDFQSAFSLFRDMRE 466
L AY E + A Q+ + L+ ++ + L+ + +S SA +F DM +
Sbjct: 138 LSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVK 197
Query: 467 ARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLE 526
+ ++ ++ G + E L+ +V + +V +N+I+ A K GRL
Sbjct: 198 IGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLS 257
Query: 527 DAKRTLRRMIFLQFEPNDQTYLSLINGY 554
D K L M PN TY +L+ GY
Sbjct: 258 DLKELLLDMKKNGLVPNRVTYNNLVYGY 285
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 28/368 (7%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+P++ ++ + G C G V DA ++ M +G RP+ + + GL V
Sbjct: 136 EPDVVTVSSLINGFCQG-NRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAV 194
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYC 334
EL M G + V Y+SL++G G A+R + +M D T+
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLM------RDMVMRDIVPNVITFT 248
Query: 335 EVVKGFLQNGNVKGLANLIIEAQKL--EPSGIVVDRSVGF--GIISACVNLGLSDKAHSI 390
V+ F++ G EA KL E + VD V +I+ G D+A +
Sbjct: 249 AVIDVFVKEGKFS-------EAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301
Query: 391 LDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASIT 450
LD M GC + Y + +CK R E T+L +++ GL D Y+ +I+
Sbjct: 302 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ 361
Query: 451 SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH 510
+ +A +F M ++R +++ +Y ++ GL N R E A L E ++ +E+
Sbjct: 362 AGRPDAAQEIFSRM-DSR-PNIR-TYSILLYGLCMNWRVE-KALVLFENMQKSEIELDIT 417
Query: 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570
+N +IH CK G +EDA R + +P+ +Y ++I+G+ Q+ +++
Sbjct: 418 TYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLY--- 474
Query: 571 KRKISTDG 578
RK+ DG
Sbjct: 475 -RKMQEDG 481
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 72/189 (38%), Gaps = 1/189 (0%)
Query: 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDAL 444
D S+ M CG L Y + C+ R A +V + G + DV +L
Sbjct: 86 DLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSL 145
Query: 445 IEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPR 504
I A L M E Y TI+ G + D + D
Sbjct: 146 INGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDG- 204
Query: 505 VEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVL 564
V +NS++ C +GR DA R +R M+ PN T+ ++I+ +V ++ +
Sbjct: 205 VRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAM 264
Query: 565 MMWHEIKRK 573
++ E+ R+
Sbjct: 265 KLYEEMTRR 273
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 169/370 (45%), Gaps = 36/370 (9%)
Query: 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVEL 278
NIY C AL C +G + DA +++ +M+ P+ S+ L + Y G K VE
Sbjct: 347 NIYIC--AL--CDFG--RIDDARELLSSMAA----PDVVSYNTLMHGYIKMG---KFVEA 393
Query: 279 ESLMNEF---GFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE-TYC 334
L ++ +V Y++LI G + GNLE A R L Q F TY
Sbjct: 394 SLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQR-----LKEEMTTQLIFPDVITYT 448
Query: 335 EVVKGFLQNGNVKGLANLIIEAQK--LEPSGIV-VDRSVGFGIISACVNLGLSDKAHSIL 391
+VKGF++NGN+ + E + ++P G R+VG + LG SDKA +
Sbjct: 449 TLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVG------ELRLGDSDKAFRLH 502
Query: 392 DEMNACGCSV-GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASIT 450
+EM A L +Y + CK +A + I GL D Y +I +
Sbjct: 503 EEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLE 562
Query: 451 SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP-RVEVKT 509
+ F+ A +L+ +M R+Y +Y ++ G + R E + E+ + R V T
Sbjct: 563 NGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMT 622
Query: 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHE 569
H N++++ CKAG +++A R L +M PN +Y LI+ E++ V+ ++ E
Sbjct: 623 H--NALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKE 680
Query: 570 -IKRKISTDG 578
+ ++I DG
Sbjct: 681 MLDKEIEPDG 690
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 107/501 (21%), Positives = 188/501 (37%), Gaps = 88/501 (17%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
P++ CN L+ + ++ A V ETM G+ P +F + G E++ +
Sbjct: 201 PSVRNCNIVLK-VLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDK 259
Query: 278 LESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYC--E 335
+ M V Y+ LI+G+ K G +E A R G+M +S F+ Y
Sbjct: 260 IWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRF------HGDMRRSGFAVTPYSFNP 313
Query: 336 VVKGFLQNG---NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILD 392
+++G+ + G + G+ + ++ A GI S I A + G D A +L
Sbjct: 314 LIEGYCKQGLFDDAWGVTDEMLNA------GIYPTTSTYNIYICALCDFGRIDDARELLS 367
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452
M A Y + Y K + EA+ L D+ + + + Y+ LI+ S
Sbjct: 368 SMAAPDVVS----YNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESG 423
Query: 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE----------- 501
+ + A L +M I+ +Y T++ G ++N + DE++
Sbjct: 424 NLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYT 483
Query: 502 ----------DPRVEVKTHD--------------WNSIIHAFCKAGRLEDAKRTLRRMIF 537
D + H+ +N I CK G L A R++
Sbjct: 484 TRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFR 543
Query: 538 LQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK------------------------ 573
+ P+ TY ++I GY+ Q+ ++ E+ RK
Sbjct: 544 VGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQ 603
Query: 574 ---ISTDGQK-GIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM 629
ST+ +K G++ +A LY + K G D + + K +E + +K+ Y
Sbjct: 604 AFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLIS 663
Query: 630 EN---HKKLKVAKLRKRNFKK 647
+N K +V KL K K
Sbjct: 664 KNCDFEKWEEVVKLYKEMLDK 684
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 158/397 (39%), Gaps = 46/397 (11%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
KP + NA + G C VSDA +I+ M G +PNE ++G + + G +
Sbjct: 174 KPTLITLNALVNGLCLN-GKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAM 232
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET--YC 334
EL M E V YS +I G K G+L++A ME F + Y
Sbjct: 233 ELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLF------NEMEIKGFKADIIIYT 286
Query: 335 EVVKGFLQNGNVKGLANLIIE--AQKLEPS------------------------------ 362
+++GF G A L+ + +K+ P
Sbjct: 287 TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQR 346
Query: 363 GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422
GI D +I DKA+ +LD M + GC + + + YCK + +
Sbjct: 347 GISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDG 406
Query: 423 TQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482
+L +S G+ D Y+ LI+ + A LF++M R+ SY ++ G
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDG 466
Query: 483 LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP 542
L +N PE A + E +E ++E+ +N IIH C A +++DA + +P
Sbjct: 467 LCDNGEPE-KALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 525
Query: 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQ 579
+ +TY +I G +++ RK+ DG
Sbjct: 526 DVKTYNIMIGGLCKKGSLSEADLLF----RKMEEDGH 558
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 143/362 (39%), Gaps = 52/362 (14%)
Query: 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVEL 278
N+Y + + CC + +S A + + LG P+ +F L L+G + +EL
Sbjct: 106 NLYTLSIMINCCCR-CRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALEL 164
Query: 279 ESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDF--SKETYCEV 336
M E G ++ ++L++G G + A I M ++ F ++ TY V
Sbjct: 165 VDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLI------DRMVETGFQPNEVTYGPV 218
Query: 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNA 396
+K ++G L+ +K+E I +D II G D A ++ +EM
Sbjct: 219 LKVMCKSGQTALAMELL---RKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275
Query: 397 CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456
G + +Y ++ +C R + +L+ D+ + DV + ALI+ + +
Sbjct: 276 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335
Query: 457 AFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516
A L ++M + I P+ T + S+I
Sbjct: 336 AEELHKEMIQRGI------------------SPD------------------TVTYTSLI 359
Query: 517 HAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIST 576
FCK +L+ A L M+ PN +T+ LINGY A L E+ RK+S
Sbjct: 360 DGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL----ELFRKMSL 415
Query: 577 DG 578
G
Sbjct: 416 RG 417
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 506 EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLM 565
E T ++++I+ C GR+ +A + RM+ + +P T +L+NG + ++
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198
Query: 566 MWHEIKRKISTDGQKGIKFEHNLV--DAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWK 623
+ I R + T F+ N V L + K G M+++ K +E K+ +D K
Sbjct: 199 L---IDRMVETG------FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249
Query: 624 Y 624
Y
Sbjct: 250 Y 250
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 149/358 (41%), Gaps = 48/358 (13%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
KP + N + G C VSDA +I+ M G +PNE ++G + + G +
Sbjct: 190 KPTLITLNTLVNGLCLN-GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAM 248
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYC 334
EL M E V YS +I G K G+L++A ME F + TY
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLF------NEMEIKGFKADIITYN 302
Query: 335 EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394
++ GF G A L+ + K + S VV SV +I + V G +A +L EM
Sbjct: 303 TLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV---LIDSFVKEGKLREADQLLKEM 359
Query: 395 NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454
G + Y + +CKE+R EA Q+V + S G D+ ++ LI +
Sbjct: 360 MQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Query: 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514
LFR+M + G++ N T +N+
Sbjct: 420 DDGLELFREMS--------------LRGVIAN----------------------TVTYNT 443
Query: 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572
++ FC++G+LE AK+ + M+ + P+ +Y L++G + L ++ +I++
Sbjct: 444 LVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK 501
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 109/287 (37%), Gaps = 47/287 (16%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
K +I N + G C D K++ M + PN +F L + +G +
Sbjct: 295 KADIITYNTLIGGFCNA-GRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGG--------NMEQSDF 328
+L M + G + + Y+SLI G+ K LE A + + L + G N+ + +
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413
Query: 329 SKE-----------------------TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIV 365
K TY +V+GF Q+G ++ L E +
Sbjct: 414 CKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQE---------M 464
Query: 366 VDRSVGFGIISACVNL-GLSD-----KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRT 419
V R V I+S + L GL D KA I ++ + +G+Y+ + C +
Sbjct: 465 VSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKV 524
Query: 420 AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466
+A L + G++LD Y+ +I A LFR M E
Sbjct: 525 DDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTE 571
Score = 37.0 bits (84), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514
A LFRDM ++R + + + + + + EL+ A ++ E + + +
Sbjct: 70 DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQM-ESKGIAHSIYTLSI 128
Query: 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
+I+ FC+ +L A T+ +++ L +EP+ + +L+NG
Sbjct: 129 MINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNG 167
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/398 (23%), Positives = 170/398 (42%), Gaps = 21/398 (5%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
+KP++ N ++ C Q + A ++E M G+ P+E +F + Y +G +
Sbjct: 185 IKPDVSTFNVLIKALCRAHQ-LRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSD--FSKE-T 332
+ + M EFG S V + ++ G+ K G +E A I M D F + T
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFI------QEMSNQDGFFPDQYT 297
Query: 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILD 392
+ +V G + G+VK ++ + G D +IS LG +A +LD
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIM---DVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452
+M CS Y + CKE++ EAT+L ++S G+ DV +++LI+ ++
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDW 512
+ + A LF +MR + +Y ++ L + + L + +E +
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQ-MELSGCARSVITY 473
Query: 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572
N++I FCKA + +A+ M N TY +LI+G + + + +
Sbjct: 474 NTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQ--- 530
Query: 573 KISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVE 610
+ +GQK K+ +N + L +GG +V+
Sbjct: 531 -MIMEGQKPDKYTYN---SLLTHFCRGGDIKKAADIVQ 564
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 119/292 (40%), Gaps = 22/292 (7%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
P++ N+ ++G C ++ A ++ E M G P+E ++ L KG ++ +
Sbjct: 398 PDVCTFNSLIQGLCL-TRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456
Query: 278 LESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCE 335
+ M G + ++ Y++LI G+ K A ME S+ TY
Sbjct: 457 MLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIF------DEMEVHGVSRNSVTYNT 510
Query: 336 VVKGFLQNGNVKGLANL----IIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSIL 391
++ G ++ V+ A L I+E QK D+ +++ G KA I+
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQK-------PDKYTYNSLLTHFCRGGDIKKAADIV 563
Query: 392 DEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS 451
M + GC + Y + CK R A++L+ I G+ L Y+ +I+
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRK 623
Query: 452 QDFQSAFSLFRDMREARIYDLKG-SYLTIMTGLMENHRPELMAA-FLDEVVE 501
+ A +LFR+M E SY + GL P A FL E++E
Sbjct: 624 RKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLE 675
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 94/440 (21%), Positives = 183/440 (41%), Gaps = 44/440 (10%)
Query: 184 LVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQ---SVSDA 240
L+D R + A L++F NL KPN A E L S D
Sbjct: 53 LLDSLRSQPDDSAALRLF----------NLASKKPNFSPEPALYEEILLRLGRSGSFDDM 102
Query: 241 EKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE-LESLMNEFGFSSQMVFYSSLIS 299
+K++E M S+F L YA LQ++I+ ++ +++EFG FY+ +++
Sbjct: 103 KKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLN 162
Query: 300 GYVKLGNLESASRTILLCLGGGNME----QSDFSKETYCEVVKGFLQNGNVKGLANLIIE 355
V +L+ L+ + M + D S T+ ++K + L I+
Sbjct: 163 LLVDGNSLK------LVEISHAKMSVWGIKPDVS--TFNVLIKALCR---AHQLRPAILM 211
Query: 356 AQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCS---VGLGVYVPTLKA 412
+ + G+V D ++ + G D A I ++M GCS V + V V
Sbjct: 212 LEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIV---HG 268
Query: 413 YCKEHRTAEATQLVMDISS-SGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYD 471
+CKE R +A + ++S+ G D ++ L+ + + A + M +
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 472 LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531
+Y ++++GL + + LD+++ T +N++I CK ++E+A
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITR-DCSPNTVTYNTLISTLCKENQVEEATEL 387
Query: 532 LRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDA 591
R + P+ T+ SLI G + + ++ E++ K G + +F +N++
Sbjct: 388 ARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK----GCEPDEFTYNML-- 441
Query: 592 FLYALVKGGFFDAVMQVVEK 611
+ +L G D + ++++
Sbjct: 442 -IDSLCSKGKLDEALNMLKQ 460
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 77/390 (19%), Positives = 132/390 (33%), Gaps = 47/390 (12%)
Query: 203 ECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFL 262
E + L E D P++Y N+ + G C L V +A +V++ M PN ++ L
Sbjct: 316 EIMDVMLQEGYD---PDVYTYNSVISGLC-KLGEVKEAVEVLDQMITRDCSPNTVTYNTL 371
Query: 263 AYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGN 322
+ E+ EL ++ G + ++SLI G N A G
Sbjct: 372 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKG- 430
Query: 323 MEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG 382
E +F TY ++ G + N++ +++E SG +I
Sbjct: 431 CEPDEF---TYNMLIDSLCSKGKLDEALNML---KQMELSGCARSVITYNTLIDGFCKAN 484
Query: 383 LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQL----------------- 425
+ +A I DEM G S Y + CK R +A QL
Sbjct: 485 KTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYN 544
Query: 426 ------------------VMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467
V ++S+G + D+ Y LI + + A L R ++
Sbjct: 545 SLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMK 604
Query: 468 RIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK-AGRLE 526
I +Y ++ GL + E++E + + C G +
Sbjct: 605 GINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIR 664
Query: 527 DAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556
+A L ++ F P + L G +T
Sbjct: 665 EAVDFLVELLEKGFVPEFSSLYMLAEGLLT 694
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 124/310 (40%), Gaps = 23/310 (7%)
Query: 61 QTLTQD---NITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQ 117
Q +T+D N + T + N +EA + + LT+ + P NSLI L L
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL-CLT 413
Query: 118 DNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPF 177
NH + + P D T + L+ S+ + A ++K M +
Sbjct: 414 RNHRVAMELFEEMRSKGCEP---DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSV 470
Query: 178 ELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSV 237
+ + C+ N A ++F+E + + N N ++G C + V
Sbjct: 471 ITYNTLIDGFCKANKTREAE-EIFDEM-------EVHGVSRNSVTYNTLIDGLCKS-RRV 521
Query: 238 SDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSL 297
DA ++++ M + G +P++ ++ L + G +K ++ M G +V Y +L
Sbjct: 522 EDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTL 581
Query: 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANL---II 354
ISG K G +E AS+ L M+ + + Y V++G + NL ++
Sbjct: 582 ISGLCKAGRVEVASKL----LRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREML 637
Query: 355 EAQKLEPSGI 364
E + P +
Sbjct: 638 EQNEAPPDAV 647
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/350 (22%), Positives = 145/350 (41%), Gaps = 41/350 (11%)
Query: 258 SFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLC 317
SFG L G EK +L + EFGFS +V Y++LI G K G +E A + +
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKA-KDLFFE 223
Query: 318 LGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377
+G + ++ TY ++ G +NG K + +K++ G+ + +++
Sbjct: 224 MGKLGLVANE---RTYTVLINGLFKNGVKKQGFEMY---EKMQEDGVFPNLYTYNCVMNQ 277
Query: 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD 437
G + A + DEM G S + Y + C+E + EA ++V + S G+ +
Sbjct: 278 LCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPN 337
Query: 438 VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLD 497
+ Y+ LI+ A SL RD++ + +Y +++G A +
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVK 397
Query: 498 EVVE-----------------------DPRVEVK-----------THDWNSIIHAFCKAG 523
E+ E + ++++ H ++ +IH FC G
Sbjct: 398 EMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKG 457
Query: 524 RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
++ +A R + M+ EPN+ Y ++I GY + L + E++ K
Sbjct: 458 QMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEK 507
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 94/213 (44%), Gaps = 3/213 (1%)
Query: 362 SGIVVDRSVGFGI-ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420
S +V+D FGI I C G +K+ +L E+ G S + +Y + CK+
Sbjct: 157 SKVVLD-VYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIE 215
Query: 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM 480
+A L ++ GL + Y LI + + F ++ M+E ++ +Y +M
Sbjct: 216 KAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVM 275
Query: 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540
L ++ R + DE+ E V +N++I C+ +L +A + + +M
Sbjct: 276 NQLCKDGRTKDAFQVFDEMRERG-VSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGI 334
Query: 541 EPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
PN TY +LI+G+ + L + ++K +
Sbjct: 335 NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSR 367
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 118/265 (44%), Gaps = 13/265 (4%)
Query: 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVEL 278
NI N + G C ++ +++A KV++ M G+ PN ++ L + G K + L
Sbjct: 302 NIVTYNTLIGGLCREMK-LNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSL 360
Query: 279 ESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDF--SKETYCEV 336
+ G S +V Y+ L+SG+ + G+ A++ + ME+ SK TY +
Sbjct: 361 CRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMV------KEMEERGIKPSKVTYTIL 414
Query: 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNA 396
+ F ++ N++ L + ++L G+V D +I G ++A + M
Sbjct: 415 IDTFARSDNMEKAIQLRLSMEEL---GLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVE 471
Query: 397 CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456
C +Y + YCKE + A +L+ ++ L +V +Y +IE + +
Sbjct: 472 KNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKE 531
Query: 457 AFSLFRDMREARIYDLKGSYLTIMT 481
A L M ++ I D S L++++
Sbjct: 532 AERLVEKMIDSGI-DPSTSILSLIS 555
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 136/344 (39%), Gaps = 29/344 (8%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
PN+ ++GCC + + A+ + M LG+ NE ++ L G++++ E
Sbjct: 196 PNVVIYTTLIDGCCKKGE-IEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFE 254
Query: 278 LESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV 337
+ M E G + Y+ +++ K G + A + M + S C +V
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVF------DEMRERGVS----CNIV 304
Query: 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGI----------ISACVNLGLSDKA 387
N + GL KL + VVD+ GI I +G KA
Sbjct: 305 T---YNTLIGGLC----REMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKA 357
Query: 388 HSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA 447
S+ ++ + G S L Y + +C++ T+ A ++V ++ G++ Y LI+
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417
Query: 448 SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV 507
S + + A L M E + +Y ++ G + + +VE E
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK-NCEP 476
Query: 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLI 551
+N++I +CK G A + L+ M + PN +Y +I
Sbjct: 477 NEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMI 520
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 124/312 (39%), Gaps = 17/312 (5%)
Query: 245 ETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304
E M GV PN ++ + G + ++ M E G S +V Y++LI G +
Sbjct: 257 EKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCRE 316
Query: 305 GNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLI--IEAQKLE 360
L A++ + M+ + TY ++ GF G + +L ++++ L
Sbjct: 317 MKLNEANKVV------DQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLS 370
Query: 361 PSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420
PS + + ++S G + A ++ EM G Y + + +
Sbjct: 371 PSLVTYNI-----LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNME 425
Query: 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM 480
+A QL + + GL DV Y LI A LF+ M E + Y T++
Sbjct: 426 KAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMI 485
Query: 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540
G + L E+ E+ + + +I CK + ++A+R + +MI
Sbjct: 486 LGYCKEGSSYRALKLLKEM-EEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGI 544
Query: 541 EPNDQTYLSLIN 552
+P+ + LSLI+
Sbjct: 545 DPS-TSILSLIS 555
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/304 (20%), Positives = 125/304 (41%), Gaps = 25/304 (8%)
Query: 214 DFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL-- 271
D + PN+Y N + C ++ DA +V + M GV N + Y + GL
Sbjct: 262 DGVFPNLYTYNCVMNQLCKDGRT-KDAFQVFDEMRERGVSCN-----IVTYNTLIGGLCR 315
Query: 272 QEKIVELESLMNEF---GFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDF 328
+ K+ E ++++ G + ++ Y++LI G+ +G L + + LC +++
Sbjct: 316 EMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL---GKALSLCR---DLKSRGL 369
Query: 329 SKE--TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDK 386
S TY +V GF + G+ G A ++ E +E GI + +I +K
Sbjct: 370 SPSLVTYNILVSGFCRKGDTSGAAKMVKE---MEERGIKPSKVTYTILIDTFARSDNMEK 426
Query: 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIE 446
A + M G + Y + +C + + EA++L + + + Y+ +I
Sbjct: 427 AIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMIL 486
Query: 447 ASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE---DP 503
A L ++M E + SY ++ L + + + ++++++ DP
Sbjct: 487 GYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDP 546
Query: 504 RVEV 507
+
Sbjct: 547 STSI 550
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 164/347 (47%), Gaps = 34/347 (9%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
P+ N + G C +++A K++ M + G P++ ++G+L + GL KI
Sbjct: 285 PDAETFNDVILGLC-KFDRINEAAKMVNRMLIRGFAPDDITYGYL-----MNGLC-KIGR 337
Query: 278 LESLMNEFGF--SSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335
+++ + F ++V +++LI G+V G L+ A + +L + D TY
Sbjct: 338 VDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDA-KAVLSDMVTSYGIVPDVC--TYNS 394
Query: 336 VVKGFLQNGNVKGLANLIIEAQK---LEPS----GIVVDRSVGFGIISACVNLGLSDKAH 388
++ G+ + G V GLA ++ + +P+ I+VD GF LG D+A+
Sbjct: 395 LIYGYWKEGLV-GLALEVLHDMRNKGCKPNVYSYTILVD---GF------CKLGKIDEAY 444
Query: 389 SILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS 448
++L+EM+A G + + A+CKEHR EA ++ ++ G + DV +++LI
Sbjct: 445 NVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGL 504
Query: 449 ITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV--EDPRVE 506
+ + A L RDM + +Y T++ + + ++E+V P E
Sbjct: 505 CEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDE 564
Query: 507 VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
+ +NS+I C+AG ++ A+ +M+ P++ + LING
Sbjct: 565 IT---YNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 135/325 (41%), Gaps = 14/325 (4%)
Query: 182 GFLVDICRKNSNFVAFLKVFEECCRIALDENLDF----MKPNIYACNAALEGCCYGLQSV 237
G + D+C NS + K E +AL+ D KPN+Y+ ++G C L +
Sbjct: 384 GIVPDVCTYNSLIYGYWK--EGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFC-KLGKI 440
Query: 238 SDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSL 297
+A V+ MS G++PN F L + + + VE+ M G + ++SL
Sbjct: 441 DEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Query: 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQ 357
ISG ++ ++ A + + G + + TY ++ FL+ G +K L+ E
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANT----VTYNTLINAFLRRGEIKEARKLVNE-- 554
Query: 358 KLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH 417
+ G +D +I G DKA S+ ++M G + + C+
Sbjct: 555 -MVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613
Query: 418 RTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYL 477
EA + ++ G D+ +++LI + + ++FR ++ I ++
Sbjct: 614 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFN 673
Query: 478 TIMTGLMENHRPELMAAFLDEVVED 502
T+M+ L + LDE +ED
Sbjct: 674 TLMSWLCKGGFVYDACLLLDEGIED 698
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 93/226 (41%), Gaps = 5/226 (2%)
Query: 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388
S + Y ++ NG K + L+I+ ++ GIV S+ I+ G +
Sbjct: 110 SFDVYQVLIGKLGANGEFKTIDRLLIQ---MKDEGIVFKESLFISIMRDYDKAGFPGQTT 166
Query: 389 SILDEM-NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA 447
++ EM N C Y L+ + A + D+ S + + + +++A
Sbjct: 167 RLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKA 226
Query: 448 SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV 507
+ SA SL RDM + Y T++ L + +R L+E+ V
Sbjct: 227 FCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVP- 285
Query: 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
+N +I CK R+ +A + + RM+ F P+D TY L+NG
Sbjct: 286 DAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNG 331
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/389 (24%), Positives = 160/389 (41%), Gaps = 59/389 (15%)
Query: 253 RPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASR 312
+PNE + + L +GL +K +E+ M G S + Y++LI+ Y + G E
Sbjct: 138 KPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYE---- 193
Query: 313 TILLCLGGGNMEQSDFSKETYCEVVKGFLQNG-NVKGLANLIIEAQKLEPSGIVVDRSVG 371
T L L E+ S TY V+ + G + +GL L E + GI D
Sbjct: 194 TSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAE---MRHEGIQPDIVTY 250
Query: 372 FGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS 431
++SAC GL D+A + MN G L Y ++ + K R + L+ +++S
Sbjct: 251 NTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMAS 310
Query: 432 SGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA-------------RIYDLKGSYLT 478
G D+ +Y+ L+EA S + A +F M+ A ++ G Y
Sbjct: 311 GGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDD 370
Query: 479 IMTGLME----NHRP-------------------ELMAAFLDEVVEDPRVEVKTHDWNSI 515
+ +E N P E++ F D V E+ +++T++ I
Sbjct: 371 VRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYE--GI 428
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMW---HEIKR 572
I A K G EDA++ L+ M P+ + Y +I + A Y L+ + HE+
Sbjct: 429 IFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGS 488
Query: 573 KISTDGQKGIKFEHNLVDAFLYALVKGGF 601
S I+ H+L LY+ +GG
Sbjct: 489 NPS------IETFHSL----LYSFARGGL 507
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 85/406 (20%), Positives = 153/406 (37%), Gaps = 87/406 (21%)
Query: 193 NFVAFLKVFEECCRIALD-ENL---------DFMKPNIYACNAALEGCCYGLQSVSD-AE 241
+ + + V C R LD E L + ++P+I N L C ++ + D AE
Sbjct: 210 SILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACA--IRGLGDEAE 267
Query: 242 KVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGY 301
V TM+ G+ P+ +++ L + EK+ +L M G + Y+ L+ Y
Sbjct: 268 MVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAY 327
Query: 302 VKLGNLESA-----------------SRTILLCLGGGNMEQSDFSK-------------- 330
K G+++ A + ++LL L G + D +
Sbjct: 328 AKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDA 387
Query: 331 ETYCEVVKGFLQNGNVKGLANLIIE--AQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388
TY +++ F + G K + L + + +EP D GII AC GL + A
Sbjct: 388 ATYNILIEVFGEGGYFKEVVTLFHDMVEENIEP-----DMETYEGIIFACGKGGLHEDAR 442
Query: 389 SILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS 448
IL M A VP+ KAY +IEA
Sbjct: 443 KILQYMTANDI-------VPSSKAYT----------------------------GVIEAF 467
Query: 449 ITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK 508
+ ++ A F M E ++ +++ + A L +V D +
Sbjct: 468 GQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLV-DSGIPRN 526
Query: 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554
+N+ I A+ + G+ E+A +T M + +P+++T ++++ Y
Sbjct: 527 RDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVY 572
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 99/425 (23%), Positives = 171/425 (40%), Gaps = 62/425 (14%)
Query: 177 FELWGGFLVDICRKNSNFVAFLKVFEE-CCRIALDENLD-FMK-------PNIYACNAAL 227
F+++ + CR+N VA+ + C +DE +D F+K P + +
Sbjct: 273 FKVFNEMPLKGCRRNE--VAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLI 330
Query: 228 EGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGF 287
+ C G + S+A +++ M G++PN ++ L + EK EL M E G
Sbjct: 331 KSLC-GSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGL 389
Query: 288 SSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSK--ETYCEVVKGFLQNGN 345
++ Y++LI+GY K G +E A + L ME S TY E++KG+ ++
Sbjct: 390 MPNVITYNALINGYCKRGMIEDAVDVVEL------MESRKLSPNTRTYNELIKGYCKSNV 443
Query: 346 VK--GLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGL 403
K G+ N ++E +K+ P + + +I G D A+ +L MN G
Sbjct: 444 HKAMGVLNKMLE-RKVLPDVVTYN-----SLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQ 497
Query: 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRD 463
Y + + CK R EA L + G+ +V Y ALI+ + A +
Sbjct: 498 WTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEK 557
Query: 464 MREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE---DPRVEVKT----------- 509
M ++ ++ GL + + + +++V+ P V T
Sbjct: 558 MLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD 617
Query: 510 --------------------HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS 549
H + + I +C+ GRL DA+ + +M P+ TY S
Sbjct: 618 FDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSS 677
Query: 550 LINGY 554
LI GY
Sbjct: 678 LIKGY 682
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 150/357 (42%), Gaps = 55/357 (15%)
Query: 270 GLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFS 329
GL +++ ++ M E + Y+ +++GY KLGN+E A++ + + G DF
Sbjct: 197 GLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG--LDPDFF 254
Query: 330 KETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG--IISACVNLGLSDKA 387
TY ++ G+ Q ++ + E P V + I CV + D+A
Sbjct: 255 --TYTSLIMGYCQRKDLDSAFKVFNEM----PLKGCRRNEVAYTHLIHGLCVARRI-DEA 307
Query: 388 HSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA 447
+ +M C + Y +K+ C R +EA LV ++ +G++ ++ Y LI++
Sbjct: 308 MDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDS 367
Query: 448 SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV 507
+ F+ A L M E GLM N
Sbjct: 368 LCSQCKFEKARELLGQMLEK--------------GLMPN--------------------- 392
Query: 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMW 567
+N++I+ +CK G +EDA + M + PN +TY LI GY + + ++ ++
Sbjct: 393 -VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLN 451
Query: 568 HEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY 624
++RK+ D + ++L+D + G FD+ +++ + + D+W Y
Sbjct: 452 KMLERKVLPD----VVTYNSLID----GQCRSGNFDSAYRLLSLMNDRGLVPDQWTY 500
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 170/418 (40%), Gaps = 42/418 (10%)
Query: 216 MKPNIYACNAALEGCC-YGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEK 274
+ PN+ NA + G C G+ + DA V+E M + PN ++ L Y + +
Sbjct: 389 LMPNVITYNALINGYCKRGM--IEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKA 446
Query: 275 IVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYC 334
+ L ++ E +V Y+SLI G + GN +SA R + L G + + TY
Sbjct: 447 MGVLNKML-ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD----QWTYT 501
Query: 335 EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394
++ ++ V+ +L LE G+ + + +I G D+AH +L++M
Sbjct: 502 SMIDSLCKSKRVEEACDLF---DSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Query: 395 NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454
+ C + + C + + EAT L + GLQ V LI + DF
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618
Query: 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR---PELMAAFLDEVVEDPRVEVKTHD 511
A+S F+ M + +Y T + R E M A + E P +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDL----FT 674
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571
++S+I + G+ A L+RM EP+ T+LSLI H ++
Sbjct: 675 YSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIK---------------HLLE 719
Query: 572 RKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM 629
K QKG + E L A+ FD V++++EK E V + Y++ +
Sbjct: 720 MKYGK--QKGSEPE-------LCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLIL 768
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/335 (21%), Positives = 141/335 (42%), Gaps = 25/335 (7%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
P++ N+ ++G C + A +++ M+ G+ P++ ++ + E+ +
Sbjct: 460 PDVVTYNSLIDGQCRS-GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACD 518
Query: 278 LESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV 337
L + + G + +V Y++LI GY K G ++ A + L + S T+ ++
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNS----LTFNALI 574
Query: 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397
G +G +K A L+ E K+ G+ S +I + G D A+S +M +
Sbjct: 575 HGLCADGKLKE-ATLLEE--KMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS 631
Query: 398 GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSA 457
G Y ++ YC+E R +A ++ + +G+ D+ Y +LI+ A
Sbjct: 632 GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFA 691
Query: 458 FSLFRDMREARIYDLKGSYLTIMTGLME-------NHRPELMAAF----LDEVVE----- 501
F + + MR+ + ++L+++ L+E PEL A D VVE
Sbjct: 692 FDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKM 751
Query: 502 -DPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRM 535
+ V + +I C+ G L A++ M
Sbjct: 752 VEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHM 786
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 98/458 (21%), Positives = 189/458 (41%), Gaps = 44/458 (9%)
Query: 177 FELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQS 236
FEL ++ N +A + +E ++ ++ D + PNIY N + G C L +
Sbjct: 175 FELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYC-KLGN 233
Query: 237 VSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296
V +A + + + G+ P+ ++ L Y + + ++ + M G V Y+
Sbjct: 234 VEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTH 293
Query: 297 LISG-------------YVKLGNLES----ASRTIL---LCLGGGNMEQSDFSKE----- 331
LI G +VK+ + E + T+L LC E + KE
Sbjct: 294 LIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETG 353
Query: 332 ------TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSD 385
TY ++ + L+ Q LE G++ + +I+ G+ +
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKFEKARELL--GQMLE-KGLMPNVITYNALINGYCKRGMIE 410
Query: 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALI 445
A +++ M + S Y +K YCK + +A ++ + + DV Y++LI
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLI 469
Query: 446 EASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRV 505
+ S +F SA+ L M + + + +Y +++ L ++ R E D + E V
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSL-EQKGV 528
Query: 506 EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLM 565
+ ++I +CKAG++++A L +M+ PN T+ +LI+G + A+
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHG-LCADGKLKEAT 587
Query: 566 MWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFD 603
+ E KI G++ + ++ L+K G FD
Sbjct: 588 LLEEKMVKI------GLQPTVSTDTILIHRLLKDGDFD 619
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 118/324 (36%), Gaps = 56/324 (17%)
Query: 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG 433
++++ GL D+ + EM + Y + YCK EA Q V I +G
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG 248
Query: 434 LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR-PELM 492
L D Y +LI +D SAF +F +M + +Y ++ GL R E M
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAM 308
Query: 493 AAFL----DEV-----------------------------VEDPRVEVKTHDWNSIIHAF 519
F+ DE +E+ ++ H + +I +
Sbjct: 309 DLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSL 368
Query: 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV---TAEQYFSVLMMWHEIKRKIST 576
C + E A+ L +M+ PN TY +LINGY E V+ + RK+S
Sbjct: 369 CSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES--RKLSP 426
Query: 577 DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLK 636
+ + + L+ + + V M V+ K E KV D Y L
Sbjct: 427 N----TRTYNELIKGYCKSNVH-----KAMGVLNKMLERKVLPDVVTYNS--------LI 469
Query: 637 VAKLRKRNFKKMEALIAFKNWAGL 660
+ R NF L++ N GL
Sbjct: 470 DGQCRSGNFDSAYRLLSLMNDRGL 493
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/408 (22%), Positives = 165/408 (40%), Gaps = 48/408 (11%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
KP++ N + G C + ++A +I+ M G +PN ++G + + G +
Sbjct: 190 KPDLITINTLVNGLCLSGKE-AEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAM 248
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESA-----------------SRTILL--- 316
EL M E V YS +I G K G+L++A + IL+
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGF 308
Query: 317 CLGG----GNMEQSDFSKE-------TYCEVVKGFLQNGNVKGLANLIIEAQKLEPS--- 362
C G G D K T+ ++ F++ G ++ EA++L
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR-------EAEELHKEMIH 361
Query: 363 -GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAE 421
GI D +I DKA+ ++D M + GC + + + YCK +R +
Sbjct: 362 RGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDD 421
Query: 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481
+L +S G+ D Y+ LI+ A LF++M ++ +Y ++
Sbjct: 422 GLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLD 481
Query: 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541
GL +N E A + E +E ++E+ +N IIH C A +++DA + +
Sbjct: 482 GLCDNGESE-KALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 540
Query: 542 PNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV 589
P +TY +I G +++ RK+ DG + +N++
Sbjct: 541 PGVKTYNIMIGGLCKKGPLSEAELLF----RKMEEDGHAPDGWTYNIL 584
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 156/388 (40%), Gaps = 41/388 (10%)
Query: 250 LGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309
LG PN +F L L+G + +EL M E G ++ ++L++G
Sbjct: 152 LGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNG--------- 202
Query: 310 ASRTILLCLGGGNMEQS---DFSKETYCE---VVKGFLQNGNVK-GLANLIIE-AQKLEP 361
LCL G E D E C+ V G + N K G L +E +K+E
Sbjct: 203 ------LCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEE 256
Query: 362 SGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAE 421
I +D II G D A ++ +EM G + + Y + +C R +
Sbjct: 257 RNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDD 316
Query: 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481
+L+ D+ + +V + LI++ + + A L ++M I +Y +++
Sbjct: 317 GAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLID 376
Query: 482 GLMENHRPELMAAFLDEVVE---DPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538
G + + + +D +V DP + +N +I+ +CKA R++D R+M
Sbjct: 377 GFCKENHLDKANQMVDLMVSKGCDPNIRT----FNILINGYCKANRIDDGLELFRKMSLR 432
Query: 539 QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV--DAFLYAL 596
+ TY +LI G+ + ++ E+ + K N+V L L
Sbjct: 433 GVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSR---------KVPPNIVTYKILLDGL 483
Query: 597 VKGGFFDAVMQVVEKSQEMKVFVDKWKY 624
G + +++ EK ++ K+ +D Y
Sbjct: 484 CDNGESEKALEIFEKIEKSKMELDIGIY 511
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 440 NYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEV 499
+Y + + + A LFRDM +R + + + + + + +L+ A ++
Sbjct: 55 SYRERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM 114
Query: 500 VEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
E + + + +I+ FC+ +L A + ++I L +EPN T+ +LING
Sbjct: 115 -ELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLING 167
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 104/421 (24%), Positives = 176/421 (41%), Gaps = 44/421 (10%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL-QEKIV 276
P++ ACN+ L + + DA KV + M G + S L +KG+ E V
Sbjct: 168 PDVIACNSLL-SLLVKSRRLGDARKVYDEMCDRGDSVDNYSTCIL-----VKGMCNEGKV 221
Query: 277 ELESLMNEF----GFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET 332
E+ + E G +VFY+++I GY KLG++E+A G M + ET
Sbjct: 222 EVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMP----TLET 277
Query: 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF--GIISACVNLGLS-DKAHS 389
+ ++ GF + G+ L+ E ++ G+ V SV F II A G D A S
Sbjct: 278 FGTMINGFCKEGDFVASDRLLSEVKE---RGLRV--SVWFLNNIIDAKYRHGYKVDPAES 332
Query: 390 ILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449
I + A C + Y + CKE + A + + S GL + +Y LI+A
Sbjct: 333 I-GWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYC 391
Query: 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE------DP 503
S+++ A L M E +Y ++ GL +++ +D+ V D
Sbjct: 392 KSKEYDIASKLLLQMAERGCKPDIVTYGILIHGL-------VVSGHMDDAVNMKVKLIDR 444
Query: 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563
V +N ++ CK GR AK M+ P+ Y +LI+G++ + +
Sbjct: 445 GVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDF--- 501
Query: 564 LMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWK 623
E ++ S +KG+K + +A + + G D + + + E + DK+
Sbjct: 502 ----DEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFT 557
Query: 624 Y 624
Y
Sbjct: 558 Y 558
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 115/286 (40%), Gaps = 15/286 (5%)
Query: 240 AEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299
A K++ M+ G +P+ ++G L + + G + V ++ + + G S Y+ L+S
Sbjct: 399 ASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMS 458
Query: 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKL 359
G K G A L + + Y ++ GF+++G+ EA+K+
Sbjct: 459 GLCKTGRFLPAKLLFSEMLDRNILPDA----YVYATLIDGFIRSGDFD-------EARKV 507
Query: 360 ----EPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK 415
G+ VD +I G+ D+A + ++ MN Y + Y K
Sbjct: 508 FSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVK 567
Query: 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGS 475
+ A A ++ + + + +V Y +LI DF+ A F++M+ + +
Sbjct: 568 QQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVT 627
Query: 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK 521
Y T++ L + A + E++ + +N ++ F K
Sbjct: 628 YTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVK 673
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/336 (20%), Positives = 126/336 (37%), Gaps = 46/336 (13%)
Query: 217 KPNIYACNAALEGCCY-GLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
KP++ N + C G + V A ++ S G+ PN S+ L Y +
Sbjct: 342 KPDVATYNILINRLCKEGKKEV--AVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIA 399
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335
+L M E G +V Y LI G V G+++ A + + G + Y
Sbjct: 400 SKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDA----AIYNM 455
Query: 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMN 395
++ G + G + L ++ ++ L+ I+ D V +I + G D+A +
Sbjct: 456 LMSGLCKTG--RFLPAKLLFSEMLD-RNILPDAYVYATLIDGFIRSGDFDEARKVFSLSV 512
Query: 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ 455
G V + + +K +C+ EA + ++ L D Y +I+ + QD
Sbjct: 513 EKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMA 572
Query: 456 SAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515
+A +FR M + + +P ++ + S+
Sbjct: 573 TAIKIFRYMEKNKC------------------KPNVVT------------------YTSL 596
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLI 551
I+ FC G + A+ T + M PN TY +LI
Sbjct: 597 INGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLI 632
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 108/483 (22%), Positives = 185/483 (38%), Gaps = 99/483 (20%)
Query: 193 NFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGV 252
+FV L +E + L L P++ + + + G C + K+IE M G+
Sbjct: 254 HFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCR-FGELDKVWKLIEVMKRKGL 312
Query: 253 RPNESSFGFLAYLYALKGLQEKIVELESLMNEF------GFSSQMVFYSSLISGYVKLGN 306
+PN +G ++ GL +I +L F G V Y++LI G+ K G+
Sbjct: 313 KPNSYIYG------SIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366
Query: 307 LESASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLIIE--AQKLEPS 362
+ +AS+ M D + + TY ++ GF Q G++ L E + LEP
Sbjct: 367 IRAASKFFY------EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPD 420
Query: 363 GIVVDRSV-----------GFGIISACVNLGLS-------------------DKAHSILD 392
+ + F + + + G S D A+ +L
Sbjct: 421 SVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 480
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452
EM G + Y + CK EA +LV + ++GL D Y L++A S
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 540
Query: 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDW 512
+ A + ++M KG TI+T +
Sbjct: 541 EMDKAQEILKEMLG------KGLQPTIVT------------------------------F 564
Query: 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI-K 571
N +++ FC G LED ++ L M+ PN T+ SL+ Y + ++ ++
Sbjct: 565 NVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCS 624
Query: 572 RKISTDGQ------KGIKFEHNLVDA-FLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY 624
R + DG+ KG N+ +A FL+ +KG F + V S +K F+ + K+
Sbjct: 625 RGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFS--VSVSTYSVLIKGFLKRKKF 682
Query: 625 KQA 627
+A
Sbjct: 683 LEA 685
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/387 (20%), Positives = 152/387 (39%), Gaps = 42/387 (10%)
Query: 199 KVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESS 258
+VFE+ L ++D +CN L + A V +GV N +S
Sbjct: 196 RVFEKMLNYGLVLSVD-------SCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVAS 248
Query: 259 FGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTI---- 314
+ + + G ++ L LM G++ ++ YS++++GY + G L+ + I
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308
Query: 315 ----------------LLC----LGGGNMEQSDFSKE-------TYCEVVKGFLQNGNVK 347
LLC L S+ ++ Y ++ GF + G+++
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 368
Query: 348 GLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYV 407
+ E + I D IIS +G +A + EM G +
Sbjct: 369 AASKFFYE---MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425
Query: 408 PTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467
+ YCK +A ++ + +G +V Y LI+ D SA L +M +
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485
Query: 468 RIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527
+ +Y +I+ GL ++ E + E E + T + +++ A+CK+G ++
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE-FEAAGLNADTVTYTTLMDAYCKSGEMDK 544
Query: 528 AKRTLRRMIFLQFEPNDQTYLSLINGY 554
A+ L+ M+ +P T+ L+NG+
Sbjct: 545 AQEILKEMLGKGLQPTIVTFNVLMNGF 571
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/399 (19%), Positives = 168/399 (42%), Gaps = 51/399 (12%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
+ P++ A + G C + + +A K+ M G+ P+ +F L Y G +
Sbjct: 382 ITPDVLTYTAIISGFCQ-IGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDA 440
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335
+ + M + G S +V Y++LI G K G+L+SA+ +L + ++ + F TY
Sbjct: 441 FRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE-LLHEMWKIGLQPNIF---TYNS 496
Query: 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMN 395
+V G ++GN++ L+ E E +G+ D ++ A G DKA IL EM
Sbjct: 497 IVNGLCKSGNIEEAVKLVGE---FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEML 553
Query: 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ 455
G + + + +C + +L+ + + G+ + +++L++ + +
Sbjct: 554 GKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLK 613
Query: 456 SAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515
+A ++++DM + P + KT++ ++
Sbjct: 614 AATAIYKDMCSRGV--------------------------------GP--DGKTYE--NL 637
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575
+ CKA +++A + M F + TY LI G++ +++ ++ +++R
Sbjct: 638 VKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR--- 694
Query: 576 TDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614
+G+ + + D F KG D ++ +++ E
Sbjct: 695 ----EGLAADKEIFDFFSDTKYKGKRPDTIVDPIDEIIE 729
Score = 37.0 bits (84), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 501 EDPRVEV--KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAE 558
E P V V +N +IH C+ GR+++A L M + P+ +Y +++NGY
Sbjct: 236 EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFG 295
Query: 559 QYFSVLMMWHEIKRK 573
+ V + +KRK
Sbjct: 296 ELDKVWKLIEVMKRK 310
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 94/475 (19%), Positives = 189/475 (39%), Gaps = 32/475 (6%)
Query: 85 DEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQT 144
+EA + F + +FP N L+ + L ++KR F ++ + P + T
Sbjct: 209 EEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGAR-PTVF---T 264
Query: 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVD----ICRKNSNFVAFLKV 200
+ ++ M A L + M K R +P + ++D + R + F ++
Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEM-KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEM 323
Query: 201 FEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFG 260
+ CC +P++ NA L C + + M G++PN S+
Sbjct: 324 KDMCC-----------EPDVITYNA-LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYS 371
Query: 261 FLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGG 320
L + +G+ ++ ++ M G Y+SLI K+GNL A R G
Sbjct: 372 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL------G 425
Query: 321 GNMEQS--DFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC 378
M Q +++ TY ++ G +K L K++ +G++ + + +I
Sbjct: 426 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELF---GKMDTAGVIPNLASYNALIHGF 482
Query: 379 VNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV 438
V D+A +L+E+ G L +Y + C + A ++ ++ G++ +
Sbjct: 483 VKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANS 542
Query: 439 GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDE 498
Y L++A S + L +M+E I ++ ++ GL +N + +
Sbjct: 543 LIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNR 602
Query: 499 VVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
+ D ++ + ++I CK ++E A +M+ P+ Y SL++G
Sbjct: 603 ISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 657
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/364 (20%), Positives = 149/364 (40%), Gaps = 20/364 (5%)
Query: 258 SFGFLAYLYALK---GLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTI 314
FG L+++ G+ E+ ++ S M F + + L+ + KLG + R
Sbjct: 191 GFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFF 250
Query: 315 LLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGI 374
+G G + TY ++ + G+V+ L ++++ G+V D +
Sbjct: 251 KDMIGAGARP----TVFTYNIMIDCMCKEGDVEAARGLF---EEMKFRGLVPDTVTYNSM 303
Query: 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGL 434
I +G D +EM C + Y + +CK + + ++ +GL
Sbjct: 304 IDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGL 363
Query: 435 QLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAA 494
+ +V +Y L++A Q A + DMR + + +Y +++ L A
Sbjct: 364 KPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA--NCKIGNLSDA 421
Query: 495 F-LDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
F L + VE + ++I C A R+++A+ +M PN +Y +LI+G
Sbjct: 422 FRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHG 481
Query: 554 YVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613
+V A+ L + +E+K +GIK + L F++ L +A V+ + +
Sbjct: 482 FVKAKNMDRALELLNELK-------GRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 534
Query: 614 EMKV 617
E +
Sbjct: 535 ECGI 538
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 113/523 (21%), Positives = 206/523 (39%), Gaps = 53/523 (10%)
Query: 84 TDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQ 143
D AWK F + AN L P + S+I L F +EKN ++
Sbjct: 254 VDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEH----LEKNRRVPCTY 309
Query: 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEE 203
+T++ +A A++L++ + + +P + ++ RK LKVFEE
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLERQ-RAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEE 368
Query: 204 ------------------CCRIA-LD---ENLDFMK-----PNIYACNAALEGCCYGLQS 236
CR LD E D M+ PN+ N ++ C Q
Sbjct: 369 MKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKS-QK 427
Query: 237 VSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296
+ +A + E M P+E +F L G + ++ M + + + Y+S
Sbjct: 428 LDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTS 487
Query: 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE-----TYCEVVKGFLQNGNVKGLAN 351
LI + G E + +M + S + TY + + F KG A
Sbjct: 488 LIKNFFNHGRKEDGHKIY------KDMINQNCSPDLQLLNTYMDCM--FKAGEPEKGRAM 539
Query: 352 LI-IEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410
I+A++ P RS +I + G +++ + + M GC + Y +
Sbjct: 540 FEEIKARRFVPDA----RSYSI-LIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI 594
Query: 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIY 470
+CK + +A QL+ ++ + G + V Y ++I+ A+ LF + + RI
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654
Query: 471 DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKR 530
Y +++ G + R + L+E+++ + + WNS++ A KA + +A
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG-LTPNLYTWNSLLDALVKAEEINEALV 713
Query: 531 TLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
+ M L+ PN TY LING ++ + W E++++
Sbjct: 714 CFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQ 756
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 85/409 (20%), Positives = 155/409 (37%), Gaps = 57/409 (13%)
Query: 208 ALDENLDFMK-----PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFL 262
ALD+ L M P++ C + GC + + V++ M RP S++ L
Sbjct: 116 ALDQILGEMSVAGFGPSVNTCIEMVLGCVKA-NKLREGYDVVQMMRKFKFRPAFSAYTTL 174
Query: 263 AYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGN 322
++ + ++ L M E G+ + +++LI G+ K G ++SA +
Sbjct: 175 IGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLL------DE 228
Query: 323 MEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG 382
M+ S + L N+ I++ FG +G
Sbjct: 229 MKSSSLDADIV---------------LYNVCIDS---------------FG------KVG 252
Query: 383 LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYD 442
D A E+ A G Y + CK +R EA ++ + + Y+
Sbjct: 253 KVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYN 312
Query: 443 ALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED 502
+I ++ F A+SL R +Y I+T L + + + +E+ +D
Sbjct: 313 TMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKD 372
Query: 503 PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFS 562
+ T +N +I C+AG+L+ A M PN +T +++ +++
Sbjct: 373 AAPNLST--YNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDE 430
Query: 563 VLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEK 611
M+ E+ K+ T + I F +L+D L K G D +V EK
Sbjct: 431 ACAMFEEMDYKVCTPDE--ITF-CSLID----GLGKVGRVDDAYKVYEK 472
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 94/466 (20%), Positives = 170/466 (36%), Gaps = 49/466 (10%)
Query: 85 DEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQT 144
D A++ S+ LFP+ N ++ L Q F + Y + P + F +
Sbjct: 394 DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV-CTPDEITFCS 452
Query: 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNS-NFVAFLKVF-- 201
+ LG + + A ++++ L CR NS + + +K F
Sbjct: 453 LIDGLGKVGRVDDA------------------YKVYEKMLDSDCRTNSIVYTSLIKNFFN 494
Query: 202 ----EECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNES 257
E+ +I D P++ N ++ C + + E + P+
Sbjct: 495 HGRKEDGHKIYKDMINQNCSPDLQLLNTYMD-CMFKAGEPEKGRAMFEEIKARRFVPDAR 553
Query: 258 SFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLC 317
S+ L + G + EL M E G Y+ +I G+ K G + A + +
Sbjct: 554 SYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLL--- 610
Query: 318 LGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLIIEAQ--KLEPSGIVVDRSV-GF 372
M+ F TY V+ G + + L EA+ ++E + ++ + GF
Sbjct: 611 ---EEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGF 667
Query: 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432
G +G D+A+ IL+E+ G + L + L A K EA +
Sbjct: 668 G------KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKEL 721
Query: 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM 492
+ Y LI + F AF +++M++ + SY T+++GL +
Sbjct: 722 KCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEA 781
Query: 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDA----KRTLRR 534
A D + V + +N++I R DA + T RR
Sbjct: 782 GALFDRFKANGGVP-DSACYNAMIEGLSNGNRAMDAFSLFEETRRR 826
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/199 (19%), Positives = 80/199 (40%), Gaps = 4/199 (2%)
Query: 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG 433
+++ C N D IL EM+ G + + + K ++ E +V +
Sbjct: 107 VMARCRNF---DALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFK 163
Query: 434 LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMA 493
+ Y LI A +LF+ M+E + T++ G + R +
Sbjct: 164 FRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSAL 223
Query: 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
+ LDE+ + ++ +N I +F K G+++ A + + +P++ TY S+I
Sbjct: 224 SLLDEM-KSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGV 282
Query: 554 YVTAEQYFSVLMMWHEIKR 572
A + + M+ +++
Sbjct: 283 LCKANRLDEAVEMFEHLEK 301
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 154/361 (42%), Gaps = 48/361 (13%)
Query: 213 LDF-MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL 271
+DF + PN++ NA ++ C G + +AE + + M +G+RPN+ ++ L ++ +G
Sbjct: 359 VDFGVSPNLFVYNALIDSLCKG-RKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGK 417
Query: 272 QEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE 331
+ + M + G + Y+SLI+G+ K G++ +A
Sbjct: 418 LDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAA--------------------- 456
Query: 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSIL 391
+GF +A +I +KLEP+ +V S+ G S G +KA +
Sbjct: 457 ------EGF--------MAEMI--NKKLEPT-VVTYTSLMGGYCSK----GKINKALRLY 495
Query: 392 DEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS 451
EM G + + + L + +A +L +++ ++ + Y+ +IE
Sbjct: 496 HEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEE 555
Query: 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511
D AF ++M E I SY ++ GL + F+D + E+
Sbjct: 556 GDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDG-LHKGNCELNEIC 614
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQ---YFSVLMMWH 568
+ ++H FC+ G+LE+A + M+ + + Y LI+G + + +F +L H
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMH 674
Query: 569 E 569
+
Sbjct: 675 D 675
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 103/490 (21%), Positives = 191/490 (38%), Gaps = 89/490 (18%)
Query: 163 ALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFM------ 216
AL+ + K R F EL + I + ++ + + C R LD L F+
Sbjct: 372 ALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDT 431
Query: 217 --KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEK 274
K ++Y N+ + G C +S AE + M + P ++ L Y KG K
Sbjct: 432 GLKLSVYPYNSLINGHCK-FGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINK 490
Query: 275 IVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDF--SKET 332
+ L M G + + +++L+SG + G + A + M + + ++ T
Sbjct: 491 ALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLF------NEMAEWNVKPNRVT 544
Query: 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILD 392
Y +++G+ + G++ + +++ GIV D +I G + +A +D
Sbjct: 545 YNVMIEGYCEEGDMSKAFEFL---KEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVD 601
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452
++ C + Y L +C+E + EA + ++ G+ LD+ Y LI+ S+ +
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHK 661
Query: 453 DFQSAFSLFR-------------------------DMREA-RIYDL---------KGSYL 477
D + F L + D +EA I+DL + +Y
Sbjct: 662 DRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYT 721
Query: 478 TIMTGLMEN---HRPELMAA----------------FLD-----EVVEDPRVEV------ 507
++ GL + + E++ + FLD EV VE+
Sbjct: 722 AVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILK 781
Query: 508 ----KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563
T +N +I FC+ GR+E+A + RMI P+ TY ++IN
Sbjct: 782 GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKA 841
Query: 564 LMMWHEIKRK 573
+ +W+ + K
Sbjct: 842 IELWNSMTEK 851
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 1/190 (0%)
Query: 363 GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422
GI D + G+I + L +A ++ M A GC V + Y + CK+ + EA
Sbjct: 222 GIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEA 281
Query: 423 TQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482
+ D++ L+ DV Y L+ Q+F+ + +M R + + +++ G
Sbjct: 282 VGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEG 341
Query: 483 LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP 542
L + + E + VV D V +N++I + CK + +A+ RM + P
Sbjct: 342 LRKRGKIEEALNLVKRVV-DFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRP 400
Query: 543 NDQTYLSLIN 552
ND TY LI+
Sbjct: 401 NDVTYSILID 410
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 1/159 (0%)
Query: 415 KEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG 474
K + EA LV + G+ ++ Y+ALI++ + F A LF M + +
Sbjct: 344 KRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDV 403
Query: 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRR 534
+Y ++ + + +FL E+V D +++ + +NS+I+ CK G + A+ +
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMV-DTGLKLSVYPYNSLINGHCKFGDISAAEGFMAE 462
Query: 535 MIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
MI + EP TY SL+ GY + + L ++HE+ K
Sbjct: 463 MINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK 501
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/369 (20%), Positives = 148/369 (40%), Gaps = 22/369 (5%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
+KP++ + G C +Q ++++ M L P+E++ L +G E+
Sbjct: 293 LKPDVVTYCTLVYGLCK-VQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEA 351
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335
+ L + +FG S + Y++LI K G + + +G + +D TY
Sbjct: 352 LNLVKRVVDFGVSPNLFVYNALIDSLCK-GRKFHEAELLFDRMGKIGLRPNDV---TYSI 407
Query: 336 VVKGFLQNGNVKG----LANLIIEAQKLE--PSGIVVDRSVGFGIISACVNLGLSDKAHS 389
++ F + G + L ++ KL P +++ FG ISA A
Sbjct: 408 LIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISA---------AEG 458
Query: 390 ILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449
+ EM + Y + YC + + +A +L +++ G+ + + L+
Sbjct: 459 FMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLF 518
Query: 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKT 509
+ + A LF +M E + + +Y ++ G E FL E+ E V T
Sbjct: 519 RAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVP-DT 577
Query: 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHE 569
+ + +IH C G+ +AK + + E N+ Y L++G+ + L + E
Sbjct: 578 YSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQE 637
Query: 570 -IKRKISTD 577
++R + D
Sbjct: 638 MVQRGVDLD 646
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 99/266 (37%), Gaps = 45/266 (16%)
Query: 282 MNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFL 341
M++ G V Y+S+I K G+ + A L + G + ++ TY V+ G
Sbjct: 673 MHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVP----NEVTYTAVINGLC 728
Query: 342 QNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSI-LDEMNACGCS 400
+ G V L K++P V ++ V +G + G D ++ L G
Sbjct: 729 KAGFVNEAEVL---CSKMQPVSSVPNQ-VTYGCFLDILTKGEVDMQKAVELHNAILKGLL 784
Query: 401 VGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSL 460
Y ++ +C++ R EA++L+ + G+ D Y +I D + A L
Sbjct: 785 ANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIEL 844
Query: 461 FRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC 520
+ M E I RP+ +A +N++IH C
Sbjct: 845 WNSMTEKGI------------------RPDRVA------------------YNTLIHGCC 868
Query: 521 KAGRLEDAKRTLRRMIFLQFEPNDQT 546
AG + A M+ PN++T
Sbjct: 869 VAGEMGKATELRNEMLRQGLIPNNKT 894
Score = 36.6 bits (83), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Query: 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLK-GSYLTIM 480
A +L D+ S G++ DV Y +I + +D A + M EA D+ Y ++
Sbjct: 211 AMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHM-EATGCDVNIVPYNVLI 269
Query: 481 TGLMENHRP-ELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539
GL + + E + D +D + +V T + ++++ CK E + M+ L+
Sbjct: 270 DGLCKKQKVWEAVGIKKDLAGKDLKPDVVT--YCTLVYGLCKVQEFEIGLEMMDEMLCLR 327
Query: 540 FEPNDQTYLSLING 553
F P++ SL+ G
Sbjct: 328 FSPSEAAVSSLVEG 341
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 8/165 (4%)
Query: 410 LKAYCKEHRTAEATQLV-MDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468
++ Y + R + + M I+ L +V AL+ + + F A LF DM
Sbjct: 163 IQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVG 222
Query: 469 IYDLKGSYLTIMTGLMENH---RPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRL 525
I Y ++ L E R + M A + E +V +N +I CK ++
Sbjct: 223 IRPDVYIYTGVIRSLCELKDLSRAKEMIAHM----EATGCDVNIVPYNVLIDGLCKKQKV 278
Query: 526 EDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570
+A + + +P+ TY +L+ G +++ L M E+
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEM 323
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/462 (21%), Positives = 191/462 (41%), Gaps = 83/462 (17%)
Query: 110 IAHLSSLQDNHNLKRAFASVVYVIEK------NPKLLDFQTVHTLLGSMRNANTAAPAFA 163
I LSSL + + + + V ++++ P + F +TL+ + N A+ A A
Sbjct: 151 IVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTF---NTLIHGLFLHNKASEAMA 207
Query: 164 LVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAF--LKVFEECCRIALDENLDFMKPNIY 221
L+ M +G + +C++ +AF L E+ ++P +
Sbjct: 208 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ----------GKLEPGVL 257
Query: 222 ACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESL 281
N ++G C + + DA + + M G+RPN
Sbjct: 258 IYNTIIDGLC-KYKHMDDALNLFKEMETKGIRPN-------------------------- 290
Query: 282 MNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKG 339
+V YSSLIS G ASR + +M + + + T+ ++
Sbjct: 291 ---------VVTYSSLISCLCNYGRWSDASRLL------SDMIERKINPDVFTFSALIDA 335
Query: 340 FLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA-------CVNLGLSDKAHSILD 392
F++ G ++EA+KL +V RS+ I++ C++ L D+A + +
Sbjct: 336 FVKEGK-------LVEAEKLYDE--MVKRSIDPSIVTYSSLINGFCMHDRL-DEAKQMFE 385
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452
M + C + Y +K +CK R E ++ ++S GL + Y+ LI+ +
Sbjct: 386 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445
Query: 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDW 512
D A +F++M + +Y T++ GL +N + E A + E ++ ++E + +
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLE-KAMVVFEYLQRSKMEPTIYTY 504
Query: 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554
N +I CKAG++ED + +P+ Y ++I+G+
Sbjct: 505 NIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 546
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 146/375 (38%), Gaps = 42/375 (11%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+PNI ++ L G C+ + +S+A +++ M V G +PN +F L + L + +
Sbjct: 148 EPNIVTLSSLLNGYCHS-KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAM 206
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET--YC 334
L M G +V Y +++G K G+ + A + MEQ Y
Sbjct: 207 ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL------NKMEQGKLEPGVLIYN 260
Query: 335 EVVKGFLQNGNVKGLANLI--IEAQKLEPSGI------------------------VVDR 368
++ G + ++ NL +E + + P+ + +++R
Sbjct: 261 TIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER 320
Query: 369 SVG------FGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422
+ +I A V G +A + DEM + Y + +C R EA
Sbjct: 321 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 380
Query: 423 TQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482
Q+ + S DV Y+ LI+ + + +FR+M + + +Y ++ G
Sbjct: 381 KQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQG 440
Query: 483 LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP 542
L + ++ E+V D V +N+++ CK G+LE A + + EP
Sbjct: 441 LFQAGDCDMAQEIFKEMVSDG-VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 499
Query: 543 NDQTYLSLINGYVTA 557
TY +I G A
Sbjct: 500 TIYTYNIMIEGMCKA 514
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/371 (20%), Positives = 155/371 (41%), Gaps = 23/371 (6%)
Query: 245 ETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304
E M LG+ N ++ L + + + + M + G+ +V SSL++GY
Sbjct: 105 EQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHS 164
Query: 305 GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKG-FLQNGNVKGLANLIIEAQKLEPSG 363
+ A + G + T+ ++ G FL N + +A + ++ G
Sbjct: 165 KRISEAVALVDQMFVTGYQPNT----VTFNTLIHGLFLHNKASEAMALI----DRMVAKG 216
Query: 364 IVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEAT 423
D +++ G +D A ++L++M G+ +Y + CK +A
Sbjct: 217 CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDAL 276
Query: 424 QLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483
L ++ + G++ +V Y +LI + A L DM E +I ++ ++
Sbjct: 277 NLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAF 336
Query: 484 MENHRPELMAAFLDEVVE---DPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540
++ + DE+V+ DP + ++S+I+ FC RL++AK+ M+
Sbjct: 337 VKEGKLVEAEKLYDEMVKRSIDPSIVT----YSSLINGFCMHDRLDEAKQMFEFMVSKHC 392
Query: 541 EPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGG 600
P+ TY +LI G+ ++ + E+ R++S G G +N++ + L + G
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGM----EVFREMSQRGLVGNTVTYNIL---IQGLFQAG 445
Query: 601 FFDAVMQVVEK 611
D ++ ++
Sbjct: 446 DCDMAQEIFKE 456
Score = 40.8 bits (94), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 17/237 (7%)
Query: 80 LTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKL 139
+ + DEA + F+ + + FP N+LI KR + E + +
Sbjct: 373 MHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFC------KYKRVEEGMEVFREMSQRG 426
Query: 140 LDFQTV--HTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAF 197
L TV + L+ + A A + K M + + L +C KN
Sbjct: 427 LVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLC-KNGKLEKA 485
Query: 198 LKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNES 257
+ VFE R M+P IY N +EG C V D + +S+ GV+P+
Sbjct: 486 MVVFEYLQRSK-------MEPTIYTYNIMIEGMCKA-GKVEDGWDLFCNLSLKGVKPDVV 537
Query: 258 SFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTI 314
++ + + KG +E+ L M E G Y++LI ++ G+ E+++ I
Sbjct: 538 AYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELI 594
Score = 39.7 bits (91), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 454 FQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN 513
A +LF +M ++R + + +++ + + ++ +++ + L E +++ + + ++
Sbjct: 62 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVIS-LGEQMQNLGIPHNHYTYS 120
Query: 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQ 559
+I+ FC+ +L A L +M+ L +EPN T SL+NGY +++
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 166
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 149/385 (38%), Gaps = 32/385 (8%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
M+P + + ++G + + DA V++ M+ G PN + L + G K
Sbjct: 339 MEPTLITYSILVKGLTRA-KRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKA 397
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLG-GGNMEQSDFSKETYC 334
+E++ LM G S Y++LI GY K G ++A R + L G N+ Q F+ C
Sbjct: 398 IEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFT-SVIC 456
Query: 335 EVVK----------------------GFLQNGNVKGLANLIIEAQKLE------PSGIVV 366
+ G L + GL ++ LE G VV
Sbjct: 457 LLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVV 516
Query: 367 DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV 426
D ++ G D+A I E+ GC + Y + C + + EA +
Sbjct: 517 DTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFL 576
Query: 427 MDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486
++ GL+ D Y LI + A + D + + +Y ++ G +
Sbjct: 577 DEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKA 636
Query: 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQT 546
R E F DE++ V+ T +N +I A+C++GRL A M PN T
Sbjct: 637 ERTEEGQEFFDEMMSK-NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 695
Query: 547 YLSLINGYVTAEQYFSVLMMWHEIK 571
Y SLI G + +++ E++
Sbjct: 696 YTSLIKGMSIISRVEEAKLLFEEMR 720
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/382 (23%), Positives = 158/382 (41%), Gaps = 54/382 (14%)
Query: 201 FEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFG 260
F++CC A D + P++Y A+ C G V +A K+ M GV PN +F
Sbjct: 255 FQKCCE-AFDVVCKGVSPDVYLFTTAINAFCKG-GKVEEAVKLFSKMEEAGVAPNVVTFN 312
Query: 261 FLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGG 320
+ + G ++ + M E G ++ YS L+ G L A R +G
Sbjct: 313 TVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKG------LTRAKR-----IGD 361
Query: 321 GNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN 380
+ +K KGF P ++V + +I + +
Sbjct: 362 AYFVLKEMTK-------KGF--------------------PPNVIVYNN----LIDSFIE 390
Query: 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440
G +KA I D M + G S+ Y +K YCK + A +L+ ++ S G ++ G+
Sbjct: 391 AGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS 450
Query: 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRP----ELMAAFL 496
+ ++I + F SA +M + G T+++GL ++ + EL FL
Sbjct: 451 FTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFL 510
Query: 497 DEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556
++ V T N+++H C+AG+L++A R + ++ + +Y +LI+G
Sbjct: 511 NK-----GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCG 565
Query: 557 AEQYFSVLMMWHE-IKRKISTD 577
++ M E +KR + D
Sbjct: 566 KKKLDEAFMFLDEMVKRGLKPD 587
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 86/232 (37%), Gaps = 44/232 (18%)
Query: 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG 433
+I C +++ DEM + VY ++AYC+ R + A +L D+ G
Sbjct: 629 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 688
Query: 434 LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMA 493
+ + Y +LI+ + A LF +MR M GL
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMR--------------MEGL---------- 724
Query: 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
+P V + ++I + K G++ + LR M PN TY +I G
Sbjct: 725 --------EPNV----FHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGG 772
Query: 554 YVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVK-GGFFDA 604
Y + +E++ +KGI + F+Y +K GG +A
Sbjct: 773 YARDGNVTEASRLLNEMR-------EKGIVPDSITYKEFIYGYLKQGGVLEA 817
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 92/404 (22%), Positives = 165/404 (40%), Gaps = 57/404 (14%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+P+I ++ L G C+G + +SDA +++ M +G RP+ +F L + L + V
Sbjct: 152 EPSIVTLSSLLNGYCHG-KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 210
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV 336
L M + G +V TY V
Sbjct: 211 ALVDRMVQRGCQPNLV---------------------------------------TYGVV 231
Query: 337 VKGFLQNGNVKGLANLI--IEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394
V G + G++ NL+ +EA K+E + ++ +I + D A ++ EM
Sbjct: 232 VNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYST-----VIDSLCKYRHEDDALNLFTEM 286
Query: 395 NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454
G + Y + C R ++A++L+ D+ + +V ++ALI+A +
Sbjct: 287 ENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKL 346
Query: 455 QSAFSLFRDMREARIYDLKGSYLTIMTGL-MENHRPELMAAFLDEVVEDPRVEVKTHDWN 513
A L+ +M + I +Y +++ G M + E F + +D V T +N
Sbjct: 347 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT--YN 404
Query: 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
++I+ FCKA R+++ R M N TY +LI+G+ A + M++ K+
Sbjct: 405 TLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF---KQM 461
Query: 574 ISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617
+S I + L+D L K G + M V E Q K+
Sbjct: 462 VSDGVHPNIMTYNTLLD----GLCKNGKLEKAMVVFEYLQRSKM 501
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 145/345 (42%), Gaps = 40/345 (11%)
Query: 245 ETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304
E M LG+ N ++ L + + + L M + G+ +V SSL++GY
Sbjct: 109 EKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHG 168
Query: 305 GNLESASRTILLCLGGGNMEQSDFSKET--YCEVVKG-FLQNGNVKGLANLIIEAQKLEP 361
+ A + M + + +T + ++ G FL N + +A
Sbjct: 169 KRISDAVALV------DQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA----------- 211
Query: 362 SGIVVDRSVGFG----------IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK 411
+VDR V G +++ G D A ++L++M A + +Y +
Sbjct: 212 ---LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVID 268
Query: 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYD 471
+ CK +A L ++ + G++ +V Y +LI + + A L DM E +I
Sbjct: 269 SLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINP 328
Query: 472 LKGSYLTIMTGLMENHRPELMAAFLDEVVE---DPRVEVKTHDWNSIIHAFCKAGRLEDA 528
++ ++ ++ + DE+++ DP + ++S+I+ FC RL++A
Sbjct: 329 NVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI----FTYSSLINGFCMHDRLDEA 384
Query: 529 KRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
K MI PN TY +LING+ A++ + ++ E+ ++
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQR 429
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 130/292 (44%), Gaps = 26/292 (8%)
Query: 272 QEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE 331
++ + L + M G ++ YSSLIS ASR + +M + +
Sbjct: 276 EDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLL------SDMIERKINPN 329
Query: 332 --TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA-------CVNLG 382
T+ ++ F++ G ++EA+KL ++ RS+ I + C++
Sbjct: 330 VVTFNALIDAFVKEGK-------LVEAEKLYDE--MIKRSIDPDIFTYSSLINGFCMHDR 380
Query: 383 LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYD 442
L D+A + + M + C + Y + +CK R E +L ++S GL + Y
Sbjct: 381 L-DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYT 439
Query: 443 ALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED 502
LI ++D +A +F+ M ++ +Y T++ GL +N + E A + E ++
Sbjct: 440 TLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE-KAMVVFEYLQR 498
Query: 503 PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554
++E + +N +I CKAG++ED + +P+ Y ++I+G+
Sbjct: 499 SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGF 550
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 88/423 (20%), Positives = 161/423 (38%), Gaps = 75/423 (17%)
Query: 110 IAHLSSLQDNHNLKRAFASVVYVIEKNPKL---LDFQTVHTLLGSMRNANTAAPAFALVK 166
I LSSL + + + + V ++++ ++ D T TL+ + N A+ A ALV
Sbjct: 155 IVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVD 214
Query: 167 CMFKNRYFMPFELWGGFLVD-ICRKN------------------SNFVAFLKVFEECCRI 207
M + R P + G +V+ +C++ +N V + V + C+
Sbjct: 215 RMVQ-RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKY 273
Query: 208 AL-DENLDF--------MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESS 258
D+ L+ ++PN+ ++L C + SDA +++ M + PN +
Sbjct: 274 RHEDDALNLFTEMENKGVRPNVIT-YSSLISCLCNYERWSDASRLLSDMIERKINPNVVT 332
Query: 259 FGFLAYLYALKGLQEKIVELESLMNEF---GFSSQMVFYSSLISGYVKLGNLESASRTIL 315
F L + +G K+VE E L +E + YSSLI+G+ L+ A
Sbjct: 333 FNALIDAFVKEG---KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 389
Query: 316 LCLGGGNMEQSDFSKETYCEVVKGFLQN-------------------GNVKGLANLI--- 353
L + TY ++ GF + GN LI
Sbjct: 390 LMISKDCFPNV----VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGF 445
Query: 354 IEAQKLEPSGIVVDRSVGFGI----------ISACVNLGLSDKAHSILDEMNACGCSVGL 403
+A+ + + +V + V G+ + G +KA + + + +
Sbjct: 446 FQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 505
Query: 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRD 463
Y ++ CK + + L +S G++ DV Y+ +I + A +LFR
Sbjct: 506 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRK 565
Query: 464 MRE 466
MRE
Sbjct: 566 MRE 568
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 439 GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDE 498
G+Y ++ + S A LF M ++R + +++ + + + +L+ + L E
Sbjct: 51 GDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVIS-LGE 109
Query: 499 VVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAE 558
++ + + +N +I+ FC+ ++ A L +M+ L +EP+ T SL+NGY +
Sbjct: 110 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 559 Q 559
+
Sbjct: 170 R 170
Score = 37.0 bits (84), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 17/209 (8%)
Query: 80 LTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKL 139
+ + DEA F+ + + FP+ N+LI KR V E + +
Sbjct: 377 MHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKA------KRIDEGVELFREMSQRG 430
Query: 140 LDFQTVH--TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAF 197
L TV TL+ A A + K M + + L +C KN
Sbjct: 431 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC-KNGKLEKA 489
Query: 198 LKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNES 257
+ VFE R M+P IY N +EG C V D + ++S+ GV+P+
Sbjct: 490 MVVFEYLQRSK-------MEPTIYTYNIMIEGMCKA-GKVEDGWDLFCSLSLKGVKPDVI 541
Query: 258 SFGFLAYLYALKGLQEKIVELESLMNEFG 286
+ + + KGL+E+ L M E G
Sbjct: 542 IYNTMISGFCRKGLKEEADALFRKMREDG 570
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 134/331 (40%), Gaps = 34/331 (10%)
Query: 238 SDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSL 297
+D E V + M ++PN +F + G K ++ M +G S +V Y++L
Sbjct: 205 ADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTL 264
Query: 298 ISGYVKLGNLESASRTILLCLGGGNMEQSD-FSKE-----------TYCEVVKGFLQNGN 345
I GY KLG G G M ++D KE T+ ++ GF ++ N
Sbjct: 265 IDGYCKLG-------------GNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDN 311
Query: 346 VKGLANLIIEA--QKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGL 403
+ G + E Q ++P+ I + +I+ N G +A S+ D+M + G L
Sbjct: 312 LPGSMKVFKEMLDQDVKPNVISYN-----SLINGLCNGGKISEAISMRDKMVSAGVQPNL 366
Query: 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRD 463
Y + +CK EA + + G Y+ LI+A F+L +
Sbjct: 367 ITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEE 426
Query: 464 MREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG 523
M I G+Y ++ GL N E D++ ++ T ++ ++ +C+ G
Sbjct: 427 MEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVT--FHILMEGYCRKG 484
Query: 524 RLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554
A L+ M + +P TY ++ GY
Sbjct: 485 ESRKAAMLLKEMSKMGLKPRHLTYNIVMKGY 515
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 145/368 (39%), Gaps = 43/368 (11%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
++PN++ N + C ++ A V+E M V G PN S+ L Y G K+
Sbjct: 219 IQPNVFTFNVVINALC-KTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKM 277
Query: 276 VELESLMNEF---GFSSQMVFYSSLISGYVKLGNLESASRTIL----------------- 315
+ ++++ E S + ++ LI G+ K NL + +
Sbjct: 278 YKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSL 337
Query: 316 ---LCLGGGNMEQSDFSKE-----------TYCEVVKGFLQNGNVKGLANLI--IEAQKL 359
LC GG E + TY ++ GF +N +K ++ ++ Q
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397
Query: 360 EPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRT 419
P+ + + +I A LG D ++ +EM G +G Y + C+
Sbjct: 398 VPTTRMYNM-----LIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNI 452
Query: 420 AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTI 479
A +L ++S GL D+ + L+E + + A L ++M + + +Y +
Sbjct: 453 EAAKKLFDQLTSKGLP-DLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIV 511
Query: 480 MTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539
M G + + ++ ++ R+ + +N ++ + + G+LEDA L M+
Sbjct: 512 MKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKG 571
Query: 540 FEPNDQTY 547
PN TY
Sbjct: 572 LVPNRITY 579
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/225 (19%), Positives = 95/225 (42%), Gaps = 48/225 (21%)
Query: 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK---EHRTAEATQLVMDIS 430
+I+A G +KA ++++M GCS + Y + YCK + +A ++ ++
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288
Query: 431 SSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490
+ + ++ ++ LI+ + + +F++M L ++ +P
Sbjct: 289 ENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEM------------------LDQDVKPN 330
Query: 491 LMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSL 550
+++ +NS+I+ C G++ +A +M+ +PN TY +L
Sbjct: 331 VIS------------------YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNAL 372
Query: 551 INGYVTAEQYFSVLMMWHEIKRKISTDGQKGI---KFEHNLVDAF 592
ING+ + L M+ +K GQ + + + L+DA+
Sbjct: 373 INGFCKNDMLKEALDMFGSVK------GQGAVPTTRMYNMLIDAY 411
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 127/552 (23%), Positives = 222/552 (40%), Gaps = 81/552 (14%)
Query: 85 DEAWKSFKSLTANSLFPSKPVTNSLI-AHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQ 143
++A + F + A L PS N+LI + + + K IE P L+ F
Sbjct: 231 NDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIE--PSLITF- 287
Query: 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEE 203
+TLL + A A ++K M K+ F+P L D N A L V+E
Sbjct: 288 --NTLLKGLFKAGMVEDAENVLKEM-KDLGFVPDAFTFSILFDGYSSNEKAEAALGVYE- 343
Query: 204 CCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLA 263
A+D + K N Y C+ L C + AE+++ G+ PNE + +
Sbjct: 344 ---TAVDSGV---KMNAYTCSILLNALCKE-GKIEKAEEILGREMAKGLVPNEVIYNTMI 396
Query: 264 YLYALKG-LQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTI-------- 314
Y KG L +++E+ M + G + Y+ LI + +LG +E+A + +
Sbjct: 397 DGYCRKGDLVGARMKIEA-MEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGV 455
Query: 315 ------LLCLGGGNMEQSDFSKETYC-EVVKGFLQNG---NVKGLANLI---------IE 355
L GG + +F K C +++K NG NV LI +E
Sbjct: 456 SPSVETYNILIGGYGRKYEFDK---CFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLE 512
Query: 356 AQ----KLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK 411
AQ +E G+ + +I C + G + A EM G + L Y +
Sbjct: 513 AQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLID 572
Query: 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYD 471
+ +EA L+++IS GL+ DV Y++LI + + Q +L+ +M+ + I
Sbjct: 573 GLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKP 632
Query: 472 LKGSYLTIMT-----GLMENHR--------PELMA----------------AF-LDEVVE 501
+Y +++ G+ R P+L+ AF L + +
Sbjct: 633 TLKTYHLLISLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMI 692
Query: 502 DPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYF 561
+ + + +NS+I K G+L + + + M + EP TY ++ G+ + Y
Sbjct: 693 EKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYM 752
Query: 562 SVLMMWHEIKRK 573
S + + E++ K
Sbjct: 753 SAYVWYREMQEK 764
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 87/202 (43%), Gaps = 8/202 (3%)
Query: 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDAL 444
+ A + DEM A L Y + YCK ++ ++ + + ++ + ++ L
Sbjct: 231 NDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTL 290
Query: 445 IEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPR 504
++ + + A ++ ++M++ ++ + G N + E + V D
Sbjct: 291 LKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAV-DSG 349
Query: 505 VEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVL 564
V++ + + +++A CK G++E A+ L R + PN+ Y ++I+GY
Sbjct: 350 VKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGAR 409
Query: 565 MMWHEIKRKISTDGQKGIKFEH 586
M KI ++G+K +H
Sbjct: 410 M-------KIEAMEKQGMKPDH 424
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 37/251 (14%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
P + N ++GCC + DA + + M G+ N ++ L ++ G K+ E
Sbjct: 527 PKVRIYNMLIDGCC-SKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTG---KLSE 582
Query: 278 LESLMNEF---GFSSQMVFYSSLISGYVKLGNL-------ESASRT------------IL 315
E L+ E G + Y+SLISGY GN+ E R+ I
Sbjct: 583 AEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLIS 642
Query: 316 LCLGGG-NMEQSDFSKET-------YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD 367
LC G + + F + + Y V+ + +G+++ NL + Q +E S I +D
Sbjct: 643 LCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNL--QKQMIEKS-IGLD 699
Query: 368 RSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVM 427
++ +I + +G + S++DEMNA Y +K +C+ A
Sbjct: 700 KTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYR 759
Query: 428 DISSSGLQLDV 438
++ G LDV
Sbjct: 760 EMQEKGFLLDV 770
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 161/392 (41%), Gaps = 59/392 (15%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQE--KI 275
PN+ N + G V D K+ E M + NE Y + GL + +
Sbjct: 253 PNVKTHNIMISGLS-KCGRVDDCLKIWERM-----KQNEREKDLYTYSSLIHGLCDAGNV 306
Query: 276 VELESLMNEFG---FSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSD-FSKE 331
+ ES+ NE S +V Y++++ G+ + G ++ + + ME + +
Sbjct: 307 DKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRI------MEHKNSVNIV 360
Query: 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPS-GIVVDRSV-GFGIISACVNLGLSDKAHS 389
+Y ++KG L+NG + A +I +L P+ G D++ G I CVN G +KA
Sbjct: 361 SYNILIKGLLENGKIDE-ATMI---WRLMPAKGYAADKTTYGIFIHGLCVN-GYVNKALG 415
Query: 390 ILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449
++ E+ + G + + Y + CK+ R EA+ LV ++S G++L+ +ALI I
Sbjct: 416 VMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLI 475
Query: 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE-------- 501
A R+M + SY ++ GL + + +AF+ E++E
Sbjct: 476 RDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLK 535
Query: 502 -----------DPRVEVKTHDW---------------NSIIHAFCKAGRLEDAKRTLRRM 535
D ++++ W N +IH C G+L+DA + M
Sbjct: 536 TYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANM 595
Query: 536 IFLQFEPNDQTYLSLINGYVTAEQYFSVLMMW 567
N TY +L+ G+ ++W
Sbjct: 596 EHRNCTANLVTYNTLMEGFFKVGDSNRATVIW 627
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/391 (21%), Positives = 154/391 (39%), Gaps = 55/391 (14%)
Query: 210 DENLDFMKP--NIYACNAALEGCCYGLQSVSDAEKVIETMSVL------GVRPNESSFGF 261
D+ LD K I+ C A+ L + +A++ ++ S+ GV PN ++
Sbjct: 95 DQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNV 154
Query: 262 LAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGG 321
L + K EK M + GF + YS++I+ K G L+ A
Sbjct: 155 LIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELF------D 208
Query: 322 NMEQSDFSKETYCE--VVKGFLQNGNVKG---LANLIIEAQKLEPS----GIVVDRSVGF 372
M + + + C ++ GFL+ + K L + ++E + P+ I++
Sbjct: 209 EMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKC 268
Query: 373 GIISACVNL--------------------------GLSDKAHSILDEMNACGCSVGLGVY 406
G + C+ + G DKA S+ +E++ S+ + Y
Sbjct: 269 GRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTY 328
Query: 407 VPTLKAYCKEHRTAEATQL--VMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464
L +C+ + E+ +L +M+ +S +++ +Y+ LI+ + + A ++R M
Sbjct: 329 NTMLGGFCRCGKIKESLELWRIMEHKNS---VNIVSYNILIKGLLENGKIDEATMIWRLM 385
Query: 465 REARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR 524
K +Y + GL N + E VE + + + SII CK R
Sbjct: 386 PAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQE-VESSGGHLDVYAYASIIDCLCKKKR 444
Query: 525 LEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555
LE+A ++ M E N +LI G +
Sbjct: 445 LEEASNLVKEMSKHGVELNSHVCNALIGGLI 475
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 5/195 (2%)
Query: 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALI 445
K S+ G + L Y +K CK+ +A + + G + DV +Y +I
Sbjct: 132 KVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVI 191
Query: 446 EASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRV 505
+ A LF +M E + Y ++ G ++ + D ++ED V
Sbjct: 192 NDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSV 251
Query: 506 --EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563
VKTH N +I K GR++D + RM + E + TY SLI+G A
Sbjct: 252 YPNVKTH--NIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKA 309
Query: 564 LMMWHEI-KRKISTD 577
+++E+ +RK S D
Sbjct: 310 ESVFNELDERKASID 324
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 148/388 (38%), Gaps = 56/388 (14%)
Query: 210 DENL-DFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL 268
DE L D + N+ A + + G C VS A + + M G PN +F L +
Sbjct: 328 DEMLSDGISMNVVAATSLITGHCKNNDLVS-ALVLFDKMEKEGPSPNSVTFSVLIEWFRK 386
Query: 269 KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDF 328
G EK +E M G + + ++I G++K E A + D
Sbjct: 387 NGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLF------------DE 434
Query: 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388
S ET GLAN+ V I+S G +D+A
Sbjct: 435 SFET---------------GLANVF----------------VCNTILSWLCKQGKTDEAT 463
Query: 389 SILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS 448
+L +M + G + Y + +C++ A + +I GL+ + Y LI+
Sbjct: 464 ELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGC 523
Query: 449 ITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK 508
+ D Q+A + M + I Y TI+ GL + + L ++E+ R+ V
Sbjct: 524 FRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVS 583
Query: 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWH 568
+NSII F K G ++ A M PN TY SL+NG + L M
Sbjct: 584 CMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRD 643
Query: 569 EIKRKISTDGQKGIKFE----HNLVDAF 592
E+K KG+K + L+D F
Sbjct: 644 EMK-------NKGVKLDIPAYGALIDGF 664
Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 85/379 (22%), Positives = 165/379 (43%), Gaps = 25/379 (6%)
Query: 202 EECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGF 261
EE ++ DE+ + N++ CN L C ++ +A +++ M G+ PN S+
Sbjct: 426 EEALKL-FDESFETGLANVFVCNTILSWLCKQGKT-DEATELLSKMESRGIGPNVVSYNN 483
Query: 262 LAYLYALKGLQEKIVELESL----MNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLC 317
+ L ++K ++L + + E G YS LI G + + E + ++
Sbjct: 484 VM----LGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFR-NHDEQNALEVVNH 538
Query: 318 LGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377
+ N+E + Y ++ G + G L+ A +E + V II
Sbjct: 539 MTSSNIEVNGV---VYQTIINGLCKVGQTSKARELL--ANMIEEKRLCVSCMSYNSIIDG 593
Query: 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD 437
G D A + +EM G S + Y + CK +R +A ++ ++ + G++LD
Sbjct: 594 FFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLD 653
Query: 438 VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLD 497
+ Y ALI+ + +SA +LF ++ E + + Y ++++G M A LD
Sbjct: 654 IPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGN---MVAALD 710
Query: 498 ---EVVEDP-RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
++++D R ++ T + ++I K G L A M + P++ Y ++NG
Sbjct: 711 LYKKMLKDGLRCDLGT--YTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNG 768
Query: 554 YVTAEQYFSVLMMWHEIKR 572
Q+ V+ M+ E+K+
Sbjct: 769 LSKKGQFVKVVKMFEEMKK 787
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 140/342 (40%), Gaps = 16/342 (4%)
Query: 119 NHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFE 178
NH+ + A V ++ N ++ + T++ + + A L+ M + +
Sbjct: 526 NHDEQNALEVVNHMTSSNIEV-NGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSC 584
Query: 179 LWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVS 238
+ ++D K + + +EE C + + PN+ + + G C +
Sbjct: 585 MSYNSIIDGFFKEGEMDSAVAAYEEMCG-------NGISPNVITYTSLMNGLCKN-NRMD 636
Query: 239 DAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298
A ++ + M GV+ + ++G L + + E L S + E G + Y+SLI
Sbjct: 637 QALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLI 696
Query: 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQK 358
SG+ LGN+ +A L G + D TY ++ G L++GN+ + L E Q
Sbjct: 697 SGFRNLGNMVAALDLYKKMLKDG--LRCDLG--TYTTLIDGLLKDGNLILASELYTEMQA 752
Query: 359 LEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR 418
+ G+V D + I++ G K + +EM + + +Y + + +E
Sbjct: 753 V---GLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGN 809
Query: 419 TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSL 460
EA +L ++ G+ D +D L+ + + A SL
Sbjct: 810 LDEAFRLHDEMLDKGILPDGATFDILVSGQVGNLQPVRAASL 851
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 72/374 (19%), Positives = 132/374 (35%), Gaps = 76/374 (20%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
+KPN Y + ++GC + +A +V+ M+ + N + + G K
Sbjct: 509 LKPNNYTYSILIDGC-FRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKA 567
Query: 276 VEL-ESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGG------------- 321
EL +++ E + Y+S+I G+ K G ++SA G G
Sbjct: 568 RELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMN 627
Query: 322 ----------NMEQSDFSKE--------TYCEVVKGFLQNGNVKGLANLIIE--AQKLEP 361
+E D K Y ++ GF + N++ + L E + L P
Sbjct: 628 GLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNP 687
Query: 362 SGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAE 421
S + + +IS NLG A + +M G LG Y + K+
Sbjct: 688 SQPIYN-----SLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLIL 742
Query: 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481
A++L ++ + GL D Y ++ F +F +M++ +
Sbjct: 743 ASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNV------------ 790
Query: 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541
P V + +N++I + G L++A R M+
Sbjct: 791 --------------------TPNVLI----YNAVIAGHYREGNLDEAFRLHDEMLDKGIL 826
Query: 542 PNDQTYLSLINGYV 555
P+ T+ L++G V
Sbjct: 827 PDGATFDILVSGQV 840
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/491 (20%), Positives = 195/491 (39%), Gaps = 31/491 (6%)
Query: 67 NITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAF 126
++ S T ++ ++D+A+ ++ + + P NS+IA L Q
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 127 ASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVD 186
++V KN + D T +++L ++ A +K M ++ P + L+D
Sbjct: 255 NTMV----KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM-RSDGVEPDVVTYSLLMD 309
Query: 187 ICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQ-SVSDAEKVIE 245
KN + K+F+ + L KP I L+G Y + ++ + +++
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGL-------KPEITTYGTLLQG--YATKGALVEMHGLLD 360
Query: 246 TMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLG 305
M G+ P+ F L YA +G ++ + + S M + G + V Y ++I K G
Sbjct: 361 LMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSG 420
Query: 306 NLESA----SRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEP 361
+E A + I L GN+ Y ++ G + LI+E +
Sbjct: 421 RVEDAMLYFEQMIDEGLSPGNI--------VYNSLIHGLCTCNKWERAEELILE---MLD 469
Query: 362 SGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAE 421
GI ++ II + G ++ + + M G + Y + YC + E
Sbjct: 470 RGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDE 529
Query: 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481
A +L+ + S GL+ + Y LI + A LF++M + + +Y I+
Sbjct: 530 AMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ 589
Query: 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541
GL + R + E +++ +N I+H CK +DA + + + + +
Sbjct: 590 GLFQTRRTAAAKELYVRITESG-TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLK 648
Query: 542 PNDQTYLSLIN 552
+T+ +I+
Sbjct: 649 LEARTFNIMID 659
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/364 (22%), Positives = 158/364 (43%), Gaps = 29/364 (7%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
P++ N+ + C Q++ A +V+ TM GV P+ ++ + + Y G ++ +
Sbjct: 229 PDVVTYNSIIAALCKA-QAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 287
Query: 278 LESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCE 335
M G +V YS L+ K G A + +M + E TY
Sbjct: 288 FLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF------DSMTKRGLKPEITTYGT 341
Query: 336 VVKGFLQNG---NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILD 392
+++G+ G + GL +L++ +GI D V +I A G D+A +
Sbjct: 342 LLQGYATKGALVEMHGLLDLMVR------NGIHPDHYVFSILICAYAKQGKVDQAMLVFS 395
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452
+M G + Y + CK R +A + GL Y++LI T
Sbjct: 396 KMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 455
Query: 453 DFQSAFSLFRDMREARIYDLKGSYLTIM--TGLMENHRPELMAAFLDEVVE-DPRVEVKT 509
++ A L +M + +G L + ++++H E +++ E R+ VK
Sbjct: 456 KWERAEELILEMLD------RGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 510 H--DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMW 567
+ +N++I+ +C AG++++A + L M+ + +PN TY +LINGY + L+++
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569
Query: 568 HEIK 571
E++
Sbjct: 570 KEME 573
Score = 63.5 bits (153), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 101/534 (18%), Positives = 202/534 (37%), Gaps = 70/534 (13%)
Query: 82 NNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLD 141
N + EA + + + S P S ++ + +A+++ ++++ L D
Sbjct: 172 NRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGI-LPD 230
Query: 142 FQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNS--NFVAFLK 199
T ++++ ++ A A ++ M KN + L C + FLK
Sbjct: 231 VVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLK 290
Query: 200 VFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSF 259
D ++P++ + ++ C + + +A K+ ++M+ G++P +++
Sbjct: 291 KMRS----------DGVEPDVVTYSLLMDYLCKNGRCM-EARKIFDSMTKRGLKPEITTY 339
Query: 260 GFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLG 319
G L YA KG ++ L LM G +S LI Y K G ++ A +L
Sbjct: 340 GTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQA----MLVFS 395
Query: 320 GGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEA---QKLEPSGIVVDRSVGFGIIS 376
+ + + TY V+ ++G V+ A L E + L P IV + +I
Sbjct: 396 KMRQQGLNPNAVTYGAVIGILCKSGRVED-AMLYFEQMIDEGLSPGNIVYN-----SLIH 449
Query: 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL 436
++A ++ EM G + + + ++CKE R E+ +L + G++
Sbjct: 450 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509
Query: 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFL 496
+V Y+ LI + A L M + GL N
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGM--------------VSVGLKPN---------- 545
Query: 497 DEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556
T ++++I+ +CK R+EDA + M P+ TY ++ G
Sbjct: 546 ------------TVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQ 593
Query: 557 AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVE 610
+ + ++ I + G + E + + L+ L K D +Q+ +
Sbjct: 594 TRRTAAAKELYVRIT-------ESGTQIELSTYNIILHGLCKNKLTDDALQMFQ 640
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 107/268 (39%), Gaps = 32/268 (11%)
Query: 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV---MDISSSGL 434
C + SD +L M GC + Y LK C E+R+ EA +L+ D G
Sbjct: 133 CADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS 192
Query: 435 QLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAA 494
DV +Y +I D A+S + +M + I +Y +I+ L + +
Sbjct: 193 PPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAME 252
Query: 495 FLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLI--- 551
L+ +V++ V +NSI+H +C +G+ ++A L++M EP+ TY L+
Sbjct: 253 VLNTMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYL 311
Query: 552 --NGYVTAEQYFSVLMMWHEIKRKISTDG-----------------------QKGIKFEH 586
NG + M +K +I+T G + GI +H
Sbjct: 312 CKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDH 371
Query: 587 NLVDAFLYALVKGGFFDAVMQVVEKSQE 614
+ + A K G D M V K ++
Sbjct: 372 YVFSILICAYAKQGKVDQAMLVFSKMRQ 399
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 76/354 (21%), Positives = 144/354 (40%), Gaps = 45/354 (12%)
Query: 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL------QEKIVELES 280
L+G C ++ + V+ M+ LG PN S+ L LKGL QE + L
Sbjct: 129 LKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNIL-----LKGLCDENRSQEALELLHM 183
Query: 281 LMNEFGFSS--QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV- 337
+ ++ G S +V Y+++I+G+ K G+ SD + TY E++
Sbjct: 184 MADDRGGGSPPDVVSYTTVINGFFKEGD-------------------SDKAYSTYHEMLD 224
Query: 338 KGFLQN-GNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL----------GLSDK 386
+G L + + + +AQ ++ + V++ V G++ C+ G +
Sbjct: 225 RGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE 284
Query: 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIE 446
A L +M + G + Y + CK R EA ++ ++ GL+ ++ Y L++
Sbjct: 285 AIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQ 344
Query: 447 ASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVE 506
T L M I+ + ++ + + + A + + +
Sbjct: 345 GYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVD-QAMLVFSKMRQQGLN 403
Query: 507 VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQY 560
+ ++I CK+GR+EDA +MI P + Y SLI+G T ++
Sbjct: 404 PNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKW 457
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 11/232 (4%)
Query: 237 VSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296
V ++EK+ E M +GV+PN ++ L Y L G ++ ++L S M G V YS+
Sbjct: 492 VIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYST 551
Query: 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLII 354
LI+GY K+ +E A +L ME S S + TY +++G Q L +
Sbjct: 552 LINGYCKISRMEDA--LVLF----KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 605
Query: 355 EAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYC 414
++ SG ++ S I+ L+D A + + + + + A
Sbjct: 606 ---RITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALL 662
Query: 415 KEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466
K R EA L + SS+GL + Y + E I + LF M +
Sbjct: 663 KVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMED 714
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 155/375 (41%), Gaps = 52/375 (13%)
Query: 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVL---GVRPNESSFGFLAYLYALKGLQEKI 275
N+Y N + C EKV +S + GV P+ ++ L Y+ KGL E+
Sbjct: 234 NVYTLNIMVNALCKD----GKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEA 289
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESAS------------------RTILL- 316
EL + M GFS + Y+++I+G K G E A R++L+
Sbjct: 290 FELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLME 349
Query: 317 -CLGG---------GNMEQSDFSKETYC--EVVKGFLQNGNVKGLANLIIEAQKLEPSGI 364
C G +M D + C ++ F ++GN L ++ ++ +G+
Sbjct: 350 ACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGN---LDKALMYFNSVKEAGL 406
Query: 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQ 424
+ D + +I G+ A ++ +EM GC++ + Y L CK EA +
Sbjct: 407 IPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADK 466
Query: 425 LVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484
L +++ L D LI+ + Q+A LF+ M+E RI +Y T++ G
Sbjct: 467 LFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFG 526
Query: 485 E----NHRPELMAAFLD-EVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539
+ + E+ A + E++ P ++ +++A C G L +A R MI
Sbjct: 527 KVGDIDTAKEIWADMVSKEILPTP------ISYSILVNALCSKGHLAEAFRVWDEMISKN 580
Query: 540 FEPNDQTYLSLINGY 554
+P S+I GY
Sbjct: 581 IKPTVMICNSMIKGY 595
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/362 (19%), Positives = 148/362 (40%), Gaps = 78/362 (21%)
Query: 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVEL 278
++ N L G C + + +A+K+ M+ + P+ + L + G + +EL
Sbjct: 444 DVVTYNTILHGLC-KRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMEL 502
Query: 279 ESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVK 338
M E +V Y++L+ G+ K+G++++A KE + ++V
Sbjct: 503 FQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA-------------------KEIWADMV- 542
Query: 339 GFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACG 398
++++ P+ I S+ +++A + G +A + DEM +
Sbjct: 543 -----------------SKEILPTPI--SYSI---LVNALCSKGHLAEAFRVWDEMISKN 580
Query: 399 CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF 458
+ + +K YC+ ++ + + S G D +Y+ LI + ++ AF
Sbjct: 581 IKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAF 640
Query: 459 SLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHA 518
L + M E + GL+ P++ +NSI+H
Sbjct: 641 GLVKKMEEEQ------------GGLV----PDVFT------------------YNSILHG 666
Query: 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHE-IKRKISTD 577
FC+ ++++A+ LR+MI P+ TY +ING+V+ + + E ++R S D
Sbjct: 667 FCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
Query: 578 GQ 579
+
Sbjct: 727 DK 728
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 89/392 (22%), Positives = 154/392 (39%), Gaps = 48/392 (12%)
Query: 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVEL 278
+I ACNA L G + V A V + +S GV N + + G EK+
Sbjct: 199 SIDACNA-LIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTF 257
Query: 279 ESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEV 336
S + E G +V Y++LIS Y G +E A + G G FS TY V
Sbjct: 258 LSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG------FSPGVYTYNTV 311
Query: 337 VKGFLQNGNVK------------GLA-------NLIIEAQK-------------LEPSGI 364
+ G ++G + GL+ +L++EA K + +
Sbjct: 312 INGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDV 371
Query: 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQ 424
V D ++S G DKA + + G +Y ++ YC++ + A
Sbjct: 372 VPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMN 431
Query: 425 LVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484
L ++ G +DV Y+ ++ + A LF +M E ++ SY +T L+
Sbjct: 432 LRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALF--PDSY--TLTILI 487
Query: 485 ENH--RPELMAAF-LDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541
+ H L A L + +++ R+ + +N+++ F K G ++ AK M+ +
Sbjct: 488 DGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEIL 547
Query: 542 PNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
P +Y L+N + +W E+ K
Sbjct: 548 PTPISYSILVNALCSKGHLAEAFRVWDEMISK 579
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 125/297 (42%), Gaps = 36/297 (12%)
Query: 60 QQTLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDN 119
QQ D +T T LH EA K F +T +LFP LI D
Sbjct: 438 QQGCAMDVVT-YNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILI-------DG 489
Query: 120 H----NLKRAFASVVYVIEKNPKLLDFQTVHTLL---GSMRNANTAAPAFALVKCMFKNR 172
H NL+ A + EK +L D T +TLL G + + +TA +A + ++
Sbjct: 490 HCKLGNLQNAMELFQKMKEKRIRL-DVVTYNTLLDGFGKVGDIDTAKEIWADMV----SK 544
Query: 173 YFMPFELWGGFLVD-ICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCC 231
+P + LV+ +C K AF +V++E + +N+ KP + CN+ ++G C
Sbjct: 545 EILPTPISYSILVNALCSKGHLAEAF-RVWDE----MISKNI---KPTVMICNSMIKGYC 596
Query: 232 YGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNE--FGFSS 289
+ SD E +E M G P+ S+ L Y + + K L M E G
Sbjct: 597 RS-GNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVP 655
Query: 290 QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNV 346
+ Y+S++ G+ + ++ A + + G + + TY ++ GF+ N+
Sbjct: 656 DVFTYNSILHGFCRQNQMKEAEVVLRKMIERG----VNPDRSTYTCMINGFVSQDNL 708
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/357 (19%), Positives = 134/357 (37%), Gaps = 49/357 (13%)
Query: 255 NESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTI 314
N+S F L Y + E +L+ GF+ + ++LI V++G +E A
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223
Query: 315 LLCLGGGNMEQSDFSKETYCE--VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF 372
+ +S Y +V ++G ++ + + + Q+ G+ D
Sbjct: 224 ------QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQE---KGVYPDIVTYN 274
Query: 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432
+ISA + GL ++A +++ M G S G+ Y + CK + A ++ ++ S
Sbjct: 275 TLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS 334
Query: 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDMR--------------------------- 465
GL D Y +L+ + D +F DMR
Sbjct: 335 GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKA 394
Query: 466 --------EARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP-RVEVKTHDWNSII 516
EA + Y ++ G + +E+++ ++V T +N+I+
Sbjct: 395 LMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVT--YNTIL 452
Query: 517 HAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
H CK L +A + M P+ T LI+G+ + + ++ ++K K
Sbjct: 453 HGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEK 509
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 140/338 (41%), Gaps = 46/338 (13%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+P+I ++ L G C+G + +SDA +++ M +G RP+ +F L + L + V
Sbjct: 152 EPSIVTLSSLLNGYCHG-KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 210
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV 336
L M + G +V Y +++G K G+ + A
Sbjct: 211 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA-------------------------- 244
Query: 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNA 396
NL+ K+E + I D + II + D A ++ EM
Sbjct: 245 -------------LNLL---NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 397 CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456
G + Y + C R ++A+QL+ D+ + ++ ++ALI+A + F
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 457 AFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV-EDPRVEVKTHDWNSI 515
A L+ DM + I +Y +++ G + R + + +V +D +V T +N++
Sbjct: 349 AEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVT--YNTL 406
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
I FCK+ R+ED R M + TY +LI G
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 444
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 101/476 (21%), Positives = 188/476 (39%), Gaps = 67/476 (14%)
Query: 110 IAHLSSLQDNHNLKRAFASVVYVIEKNPKL---LDFQTVHTLLGSMRNANTAAPAFALVK 166
I LSSL + + + + V ++++ ++ D T TL+ + N A+ A ALV
Sbjct: 155 IVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVD 214
Query: 167 CMFKNRYFMPFELWGGFLVD-ICRKNSNFVAF-LKVFEECCRIALDENLDFMKPNIYACN 224
M + R P + G +V+ +C++ +A L E +I D + N
Sbjct: 215 RMVQ-RGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEAD---------VVIFN 264
Query: 225 AALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNE 284
++ C + V DA + + M G+RPN ++ L G +L S M E
Sbjct: 265 TIIDSLC-KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323
Query: 285 FGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQ 342
+ +V +++LI +VK G A + +M + + TY +V GF
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLY------DDMIKRSIDPDIFTYNSLVNGFCM 377
Query: 343 NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVG 402
+ + DKA + + M + C
Sbjct: 378 HDRL--------------------------------------DKAKQMFEFMVSKDCFPD 399
Query: 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFR 462
+ Y +K +CK R + T+L ++S GL D Y LI+ D +A +F+
Sbjct: 400 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 459
Query: 463 DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA 522
M + +Y ++ GL N + E D ++ +++ + + ++I CKA
Sbjct: 460 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD-YMQKSEIKLDIYIYTTMIEGMCKA 518
Query: 523 GRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDG 578
G+++D + +PN TY ++I+G + +L + + +K+ DG
Sbjct: 519 GKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR----LLQEAYALLKKMKEDG 570
Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 125/316 (39%), Gaps = 22/316 (6%)
Query: 184 LVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKV 243
L+D K FV K++++ + ++D P+I+ N+ + G C + A+++
Sbjct: 336 LIDAFVKEGKFVEAEKLYDDMIKRSID-------PDIFTYNSLVNGFCMH-DRLDKAKQM 387
Query: 244 IETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK 303
E M P+ ++ L + E EL M+ G V Y++LI G
Sbjct: 388 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 447
Query: 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSG 363
G+ ++A + + G D TY ++ G NG ++ + QK E
Sbjct: 448 DGDCDNAQKVFKQMVSDG--VPPDIM--TYSILLDGLCNNGKLEKALEVFDYMQKSE--- 500
Query: 364 IVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEAT 423
I +D + +I G D + ++ G + Y + C + EA
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 560
Query: 424 QLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483
L+ + G + G Y+ LI A + D ++ L R+MR R G TI GL
Sbjct: 561 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFV---GDASTI--GL 615
Query: 484 MEN--HRPELMAAFLD 497
+ N H L +FLD
Sbjct: 616 VANMLHDGRLDKSFLD 631
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 439 GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDE 498
G+Y ++ + A LF M ++R + +++ + + + +++ + L E
Sbjct: 51 GDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVIS-LGE 109
Query: 499 VVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAE 558
++ + + +N +I+ FC+ ++ A L +M+ L +EP+ T SL+NGY +
Sbjct: 110 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 559 Q 559
+
Sbjct: 170 R 170
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 104/475 (21%), Positives = 191/475 (40%), Gaps = 65/475 (13%)
Query: 110 IAHLSSLQDNHNLKRAFASVVYVIEKNPKL---LDFQTVHTLLGSMRNANTAAPAFALVK 166
I LSSL + + + + V ++++ ++ D T TL+ + N A+ A ALV
Sbjct: 80 IVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVD 139
Query: 167 CMFKNRYFMPFELWGGFLVD-ICRKNSNFVAF-LKVFEECCRIALDENLDFMKPNIYACN 224
M + R P + G +V+ +C++ +AF L E +I D + N
Sbjct: 140 RMVQ-RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEAD---------VVIFN 189
Query: 225 AALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNE 284
++ C + V DA + + M G+RPN ++ L G +L S M E
Sbjct: 190 TIIDSLC-KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248
Query: 285 FGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQS-DFSKETYCEVVKGFLQN 343
+ +V +++LI +VK G A + L +++S D TY ++ GF +
Sbjct: 249 KKINPNLVTFNALIDAFVKEGKFVEAEK-----LHDDMIKRSIDPDIFTYNSLINGFCMH 303
Query: 344 GNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGL 403
+ DKA + + M + C L
Sbjct: 304 DRL--------------------------------------DKAKQMFEFMVSKDCFPDL 325
Query: 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRD 463
Y +K +CK R + T+L ++S GL D Y LI+ D +A +F+
Sbjct: 326 DTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQ 385
Query: 464 MREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG 523
M + +Y ++ GL N + E D ++ +++ + + ++I CKAG
Sbjct: 386 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFD-YMQKSEIKLDIYIYTTMIEGMCKAG 444
Query: 524 RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDG 578
+++D + +PN TY ++I+G + +L + + +K+ DG
Sbjct: 445 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKR----LLQEAYALLKKMKEDG 495
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 140/338 (41%), Gaps = 46/338 (13%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+P+I ++ L G C+G + +SDA +++ M +G RP+ +F L + L + V
Sbjct: 77 EPSIVTLSSLLNGYCHG-KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 135
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV 336
L M + G +V Y +++G K G+++ A
Sbjct: 136 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA-------------------------- 169
Query: 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNA 396
NL+ K+E + I D + II + D A ++ EM
Sbjct: 170 -------------FNLL---NKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Query: 397 CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456
G + Y + C R ++A+QL+ D+ + ++ ++ALI+A + F
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273
Query: 457 AFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV-EDPRVEVKTHDWNSI 515
A L DM + I +Y +++ G + R + + +V +D ++ T +N++
Sbjct: 274 AEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDT--YNTL 331
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
I FCK+ R+ED R M + TY +LI G
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQG 369
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 135/310 (43%), Gaps = 12/310 (3%)
Query: 253 RPNESSFGFLAYLYALKGLQ--EKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESA 310
RP S F F L A+ ++ + ++ L M G S + Y+ LI+ + + + A
Sbjct: 5 RPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLA 64
Query: 311 SRTILLCLGGGNMEQS-DFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS 369
L L G M+ + S T ++ G+ K +++ + ++ G D
Sbjct: 65 -----LALLGKMMKLGYEPSIVTLSSLLNGYCHG---KRISDAVALVDQMVEMGYRPDTI 116
Query: 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDI 429
+I + +A +++D M GC L Y + CK A L+ +
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176
Query: 430 SSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRP 489
++ ++ DV ++ +I++ + A +LF++M I +Y ++++ L R
Sbjct: 177 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 236
Query: 490 ELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS 549
+ L +++E ++ +N++I AF K G+ +A++ MI +P+ TY S
Sbjct: 237 SDASQLLSDMIE-KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNS 295
Query: 550 LINGYVTAEQ 559
LING+ ++
Sbjct: 296 LINGFCMHDR 305
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 124/316 (39%), Gaps = 22/316 (6%)
Query: 184 LVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKV 243
L+D K FV K+ ++ + ++D P+I+ N+ + G C + A+++
Sbjct: 261 LIDAFVKEGKFVEAEKLHDDMIKRSID-------PDIFTYNSLINGFCMH-DRLDKAKQM 312
Query: 244 IETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK 303
E M P+ ++ L + E EL M+ G V Y++LI G
Sbjct: 313 FEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFH 372
Query: 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSG 363
G+ ++A + + G D TY ++ G NG ++ + QK E
Sbjct: 373 DGDCDNAQKVFKQMVSDG--VPPDIM--TYSILLDGLCNNGKLEKALEVFDYMQKSE--- 425
Query: 364 IVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEAT 423
I +D + +I G D + ++ G + Y + C + EA
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 485
Query: 424 QLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483
L+ + G D G Y+ LI A + D ++ L R+MR R G TI GL
Sbjct: 486 ALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFV---GDASTI--GL 540
Query: 484 MEN--HRPELMAAFLD 497
+ N H L +FLD
Sbjct: 541 VANMLHDGRLDKSFLD 556
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 147/343 (42%), Gaps = 21/343 (6%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+PN+ A L+G C V +A K+++ MS+ G PN+ + L G ++
Sbjct: 636 RPNVVTYGALLDGFCKS-HRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQ 694
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET--YC 334
E+++ M+E GF + + YSSLI Y K+ + AS+ + M ++ + Y
Sbjct: 695 EVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVL------SKMLENSCAPNVVIYT 748
Query: 335 EVVKGFLQNGNVKGLANL--IIEAQKLEPSGIVVDRSV-GFGIISACVNLGLSDKAHSIL 391
E++ G + G L ++E + +P+ + + GFG+I G + +L
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMI------GKIETCLELL 802
Query: 392 DEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS 451
+ M + G + Y + CK A L+ ++ + Y +IE +
Sbjct: 803 ERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEG--FN 860
Query: 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK-TH 510
++F + L ++ + Y ++ L++ R E+ L+EV V +
Sbjct: 861 KEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSS 920
Query: 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
+NS+I + C A ++E A + M P Q++ SLI G
Sbjct: 921 TYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKG 963
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 97/447 (21%), Positives = 172/447 (38%), Gaps = 79/447 (17%)
Query: 195 VAFLKVFEECCRIAL-DENLDFMK--------PNIYACNAALEGCCYGLQSVSDAEKVIE 245
V + K+ C +L +E +DF+ PN+ + L GC + + ++V+
Sbjct: 303 VFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGC-LNKKQLGRCKRVLN 361
Query: 246 TMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFY----------- 294
M + G P+ F L + Y G +L M + G V Y
Sbjct: 362 MMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDK 421
Query: 295 ---------------SSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE-------- 331
S +++ V L + +S T LC G + +E
Sbjct: 422 DSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIP 481
Query: 332 ---TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388
TY +V+ +L N + LA L+ E K G+V D ++ + GL ++A
Sbjct: 482 DTSTYSKVL-NYLCNASKMELAFLLFEEMK--RGGLVADVYTYTIMVDSFCKAGLIEQAR 538
Query: 389 SILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS 448
+EM GC+ + Y + AY K + + A +L + S G ++ Y ALI+
Sbjct: 539 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGH 598
Query: 449 ITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAF--LDEVVEDPRVE 506
+ + A +F M ++ P++ F D+ E P V
Sbjct: 599 CKAGQVEKACQIFERMCGSK------------------DVPDVDMYFKQYDDNSERPNVV 640
Query: 507 VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMM 566
+ +++ FCK+ R+E+A++ L M EPN Y +LI+G + L
Sbjct: 641 T----YGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK----LDE 692
Query: 567 WHEIKRKISTDGQKGIKFEH-NLVDAF 592
E+K ++S G + + +L+D +
Sbjct: 693 AQEVKTEMSEHGFPATLYTYSSLIDRY 719
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/394 (22%), Positives = 161/394 (40%), Gaps = 34/394 (8%)
Query: 178 ELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDF-MKPNIYACNAALEGCCYGLQS 236
E++G FL + RK+ +F EE R+ DF +P+ N ++
Sbjct: 197 EVFGEFLNVLVRKHCRNGSFSIALEELGRLK-----DFRFRPSRSTYNCLIQAFLKA-DR 250
Query: 237 VSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296
+ A + MS+ +R + + AY G K E +L+ F VFY+
Sbjct: 251 LDSASLIHREMSLANLRMDGFTLRCFAYSLCKVG---KWREALTLVETENFVPDTVFYTK 307
Query: 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFL---QNGNVKGLAN 351
LISG + E A + M + TY ++ G L Q G K + N
Sbjct: 308 LISGLCEASLFEEAMDFL------NRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLN 361
Query: 352 LIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK 411
+++ + PS + + ++ A G A+ +L +M CG G VY +
Sbjct: 362 MMM-MEGCYPSPKIFN-----SLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIG 415
Query: 412 AYCKEHRTAEATQLVM------DISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR 465
+ C + + L + ++ ++G+ L+ N + ++ ++ AFS+ R+M
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 475
Query: 466 EARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRL 525
+Y ++ L + EL +E+ V + + ++ +FCKAG +
Sbjct: 476 GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLV-ADVYTYTIMVDSFCKAGLI 534
Query: 526 EDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQ 559
E A++ M + PN TY +LI+ Y+ A++
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKK 568
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 122/317 (38%), Gaps = 43/317 (13%)
Query: 276 VELESL--MNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETY 333
+ LE L + +F F Y+ LI ++K L+SAS I + N+ F+ +
Sbjct: 218 IALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSAS-LIHREMSLANLRMDGFTLRCF 276
Query: 334 ----CEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHS 389
C+V K A ++E + P + + +IS L ++A
Sbjct: 277 AYSLCKVGKW--------REALTLVETENFVPDTVFYTK-----LISGLCEASLFEEAMD 323
Query: 390 ILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449
L+ M A C + Y L + + +++ + G +++L+ A
Sbjct: 324 FLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYC 383
Query: 450 TSQDFQSAFSLFRDMREAR------IYDL--------KGSYLTIMTGLMENHRPELMAAF 495
TS D A+ L + M + +Y++ K S + L E E++AA
Sbjct: 384 TSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAA- 442
Query: 496 LDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555
V + + +S C AG+ E A +R MI F P+ TY ++N
Sbjct: 443 --------GVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLC 494
Query: 556 TAEQYFSVLMMWHEIKR 572
A + +++ E+KR
Sbjct: 495 NASKMELAFLLFEEMKR 511
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/397 (20%), Positives = 148/397 (37%), Gaps = 73/397 (18%)
Query: 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEK-------------IVELESL 281
+ VS A ++ ETM G PN ++ L + G EK + +++
Sbjct: 567 KKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMY 626
Query: 282 MNEFGFSSQ---MVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVK 338
++ +S+ +V Y +L+ G+ K +E A + L +ME + ++ Y ++
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKL----LDAMSMEGCEPNQIVYDALID 682
Query: 339 GFLQNGNVKGLANLIIEAQKLEPS----GIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394
G + G + EAQ+++ G +I + D A +L +M
Sbjct: 683 GLCKVGKLD-------EAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735
Query: 395 NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454
C+ + +Y + CK +T EA +L+ + G Q +V Y A+I+
Sbjct: 736 LENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKI 795
Query: 455 QSAFSLFRDMREARI------------YDLKGSYLTIMTGLME----NHRPELMAAF--- 495
++ L M + + K L + L+E H P A +
Sbjct: 796 ETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKV 855
Query: 496 --------------LDEVVED---PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538
LDE+ +D P + V + +I KA RLE A R L +
Sbjct: 856 IEGFNKEFIESLGLLDEIGQDDTAPFLSV----YRLLIDNLIKAQRLEMALRLLEEVATF 911
Query: 539 QFEPND--QTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
D TY SLI A + + ++ E+ +K
Sbjct: 912 SATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKK 948
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 495 FLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554
FL ++ +D + EV N ++ C+ G A L R+ +F P+ TY LI +
Sbjct: 187 FLQQIRDDDK-EVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAF 245
Query: 555 VTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVE 610
+ A++ S ++ E+ ++ + + F Y+L K G + + +VE
Sbjct: 246 LKADRLDSASLIHREM-------SLANLRMDGFTLRCFAYSLCKVGKWREALTLVE 294
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 97/407 (23%), Positives = 167/407 (41%), Gaps = 18/407 (4%)
Query: 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVEL 278
N+Y N + C Q +S A ++ M LG P+ + L + + V L
Sbjct: 99 NLYTYNIMINCLCRRSQ-LSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVAL 157
Query: 279 ESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVK 338
M E G+ V +++L+ G + A + + G Q D TY V+
Sbjct: 158 VDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC--QPDLV--TYGAVIN 213
Query: 339 GFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACG 398
G + G NL+ K+E I D + +I + D A ++ EM+ G
Sbjct: 214 GLCKRGEPDLALNLL---NKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270
Query: 399 CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF 458
+ Y + C R ++A++L+ D+ + +V +++LI+A A
Sbjct: 271 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAE 330
Query: 459 SLFRDMREARIYDLKGSYLTIMTGL-MENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIH 517
LF +M + I +Y +++ G M + E F V +D +V T +N++I+
Sbjct: 331 KLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVT--YNTLIN 388
Query: 518 AFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTD 577
FCKA ++ D R M N TY +LI+G+ A + M++ K+ +S
Sbjct: 389 GFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVF---KQMVSDG 445
Query: 578 GQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY 624
I + L+D L K G + M V E Q+ K+ D + Y
Sbjct: 446 VHPNIMTYNTLLD----GLCKNGKLEKAMVVFEYLQKSKMEPDIYTY 488
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 144/334 (43%), Gaps = 18/334 (5%)
Query: 245 ETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304
E M +LGV N ++ + + + + M + G+ +V +SL++G+
Sbjct: 89 EKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCH- 147
Query: 305 GNLESASRTILLCLGGGNMEQSDFSKET--YCEVVKGFLQNGNVKGLANLIIEAQKLEPS 362
GN S + ++ M + + +T + +V G Q+ L+ +++
Sbjct: 148 GNRISEAVALV-----DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALV---ERMVVK 199
Query: 363 GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422
G D +I+ G D A ++L++M + +Y + + CK +A
Sbjct: 200 GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDA 259
Query: 423 TQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482
L ++ + G++ DV Y +LI + A L DM E +I ++ +++
Sbjct: 260 LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDA 319
Query: 483 LMENHRPELMAAFLDEVVE---DPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539
+ + DE+++ DP + +NS+I+ FC RL++A++ M+
Sbjct: 320 FAKEGKLIEAEKLFDEMIQRSIDPNIVT----YNSLINGFCMHDRLDEAQQIFTLMVSKD 375
Query: 540 FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
P+ TY +LING+ A++ + ++ ++ R+
Sbjct: 376 CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRR 409
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 143/378 (37%), Gaps = 50/378 (13%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY-LYALKGLQEKIV 276
P+I N+ L G C+G +S+A +++ M +G +P+ +F L + L+ E +
Sbjct: 133 PSIVTLNSLLNGFCHG-NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVA 191
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET--YC 334
+E ++ + G +V Y ++I+G K G + A + ME+ + Y
Sbjct: 192 LVERMVVK-GCQPDLVTYGAVINGLCKRGEPDLALNLL------NKMEKGKIEADVVIYS 244
Query: 335 EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG--------LSD- 385
V+ + +V NL E ++ GI D +IS N G LSD
Sbjct: 245 TVIDSLCKYRHVDDALNLFTE---MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 301
Query: 386 --------------------------KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRT 419
+A + DEM + Y + +C R
Sbjct: 302 LERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRL 361
Query: 420 AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTI 479
EA Q+ + S DV Y+ LI ++ LFRDM + +Y T+
Sbjct: 362 DEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTL 421
Query: 480 MTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539
+ G + + ++V D V +N+++ CK G+LE A + +
Sbjct: 422 IHGFFQASDCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK 480
Query: 540 FEPNDQTYLSLINGYVTA 557
EP+ TY + G A
Sbjct: 481 MEPDIYTYNIMSEGMCKA 498
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 123/282 (43%), Gaps = 26/282 (9%)
Query: 282 MNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKG 339
M+ G + YSSLIS G ASR + +M + + T+ ++
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL------SDMLERKINPNVVTFNSLIDA 319
Query: 340 FLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA-------CVNLGLSDKAHSILD 392
F + G +IEA+KL ++ RS+ I++ C++ L D+A I
Sbjct: 320 FAKEGK-------LIEAEKLFDE--MIQRSIDPNIVTYNSLINGFCMHDRL-DEAQQIFT 369
Query: 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452
M + C + Y + +CK + + +L D+S GL + Y LI +
Sbjct: 370 LMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQAS 429
Query: 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDW 512
D +A +F+ M ++ +Y T++ GL +N + E A + E ++ ++E + +
Sbjct: 430 DCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE-KAMVVFEYLQKSKMEPDIYTY 488
Query: 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554
N + CKAG++ED + +P+ Y ++I+G+
Sbjct: 489 NIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGF 530
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 104/491 (21%), Positives = 188/491 (38%), Gaps = 93/491 (18%)
Query: 101 PSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAP 160
PS NSL L+ + + A A V ++E + D T TL+ + N A+
Sbjct: 133 PSIVTLNSL---LNGFCHGNRISEAVALVDQMVEMGYQP-DTVTFTTLVHGLFQHNKASE 188
Query: 161 AFALVKCMFKNRYFMPFELWGGFLVDICRKN------------------SNFVAFLKVFE 202
A ALV+ M +G + +C++ ++ V + V +
Sbjct: 189 AVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVID 248
Query: 203 ECCRIA-LDENLDF--------MKPNIYACNAALEGCC-YGLQSVSDAEKVIETMSVLGV 252
C+ +D+ L+ ++P+++ ++ + C YG SDA +++ M +
Sbjct: 249 SLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYG--RWSDASRLLSDMLERKI 306
Query: 253 RPNESSFGFLAYLYALKGLQEKIVELESLMNEF---GFSSQMVFYSSLISGYVKLGNLES 309
PN +F L +A +G K++E E L +E +V Y+SLI+G+ L+
Sbjct: 307 NPNVVTFNSLIDAFAKEG---KLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 363
Query: 310 ASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD 367
A + L M D + TY ++ GF + V L + + G V
Sbjct: 364 AQQIFTL------MVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVT 417
Query: 368 RSV---GFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQ 424
+ GF S C D A + +M + G + Y L CK + +A
Sbjct: 418 YTTLIHGFFQASDC------DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMV 471
Query: 425 LVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484
+ + S ++ D+ Y+ + E + + + LF + LKG
Sbjct: 472 VFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSL------SLKGV--------- 516
Query: 485 ENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544
+P+++A +N++I FCK G E+A +M P+
Sbjct: 517 ---KPDVIA------------------YNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDS 555
Query: 545 QTYLSLINGYV 555
TY +LI ++
Sbjct: 556 GTYNTLIRAHL 566
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/355 (20%), Positives = 141/355 (39%), Gaps = 31/355 (8%)
Query: 141 DFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKV 200
D T +L+ + N + A L+ M + R P + L+D K + K+
Sbjct: 274 DVFTYSSLISCLCNYGRWSDASRLLSDMLE-RKINPNVVTFNSLIDAFAKEGKLIEAEKL 332
Query: 201 FEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSF- 259
F+E + ++D PNI N+ + G C + +A+++ M P+ ++
Sbjct: 333 FDEMIQRSID-------PNIVTYNSLINGFCMH-DRLDEAQQIFTLMVSKDCLPDVVTYN 384
Query: 260 ----GFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTIL 315
GF + G+ EL M+ G V Y++LI G+ + + ++A
Sbjct: 385 TLINGFCKAKKVVDGM-----ELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439
Query: 316 LCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLI--IEAQKLEPSGIVVDRSVGFG 373
+ G TY ++ G +NG ++ + ++ K+EP I + G
Sbjct: 440 QMVSDGVHPNI----MTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPD-IYTYNIMSEG 494
Query: 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG 433
+ A G + + ++ G + Y + +CK+ EA L + + G
Sbjct: 495 MCKA----GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDG 550
Query: 434 LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488
D G Y+ LI A + D ++ L ++MR R +Y ++T ++ + R
Sbjct: 551 PLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTY-GLVTDMLHDGR 604
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 95/428 (22%), Positives = 168/428 (39%), Gaps = 42/428 (9%)
Query: 137 PKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYF-MPFELWGGFLVDICRKNSNFV 195
P ++DF + T ++R T YF EL+G I +F
Sbjct: 69 PSIVDFTRLLTATANLRRYETVI-------------YFSQKMELYG-----ISHDLYSFT 110
Query: 196 AFLKVFEECCRI--ALDENLDFMK----PNIYACNAALEGCCYGLQSVSDAEKVIETMSV 249
+ F C R+ AL MK P+I + L G C + + DA ++ M
Sbjct: 111 ILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCL-VNRIGDAFSLVILMVK 169
Query: 250 LGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309
G PN + L G +EL + M + G + +V Y++L++G G
Sbjct: 170 SGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSD 229
Query: 310 ASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLIIEA--QKLEPSGIV 365
A+R + +M + + + T+ ++ F++ GN+ L E ++P+ +
Sbjct: 230 AARML------RDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVT 283
Query: 366 VDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQL 425
+ + C++ L D A D M + GC + Y + +CK E +L
Sbjct: 284 YNSIIN----GLCMHGRLYD-AKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKL 338
Query: 426 VMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485
+S G D+ Y+ LI + A +F M R+ ++ ++ GL
Sbjct: 339 FQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCV 398
Query: 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ 545
N E D++ E + + +N +IH CKA ++E A R+ +P+ +
Sbjct: 399 NGEIESALVKFDDMRESEKY-IGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDAR 457
Query: 546 TYLSLING 553
TY +I G
Sbjct: 458 TYTIMILG 465
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 138/336 (41%), Gaps = 27/336 (8%)
Query: 253 RPNESSFGFLAYLYALKGLQ--EKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESA 310
+P S F L A L+ E ++ M +G S + ++ LI + + L A
Sbjct: 66 QPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFA 125
Query: 311 SRTILLCLGGGNMEQSDF--SKETYCEVVKGFLQNGNVKGLANLIIEAQK--LEPSGIVV 366
+ G M + + S T+ ++ GF + +L+I K EP+ +V
Sbjct: 126 LSVL------GKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVY 179
Query: 367 DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV 426
+ +I G + A +L+EM G + Y L C R ++A +++
Sbjct: 180 NT-----LIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARML 234
Query: 427 MDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486
D+ + DV + ALI+ + + A L+++M ++ + +Y +I+ GL +
Sbjct: 235 RDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMH 294
Query: 487 HRPELMAAFLDEVVED---PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN 543
R D + P V +N++I FCK +++ + +RM F +
Sbjct: 295 GRLYDAKKTFDLMASKGCFPNVVT----YNTLISGFCKFRMVDEGMKLFQRMSCEGFNAD 350
Query: 544 DQTYLSLINGYVTAEQYFSVL--MMWHEIKRKISTD 577
TY +LI+GY + L W + R+++ D
Sbjct: 351 IFTYNTLIHGYCQVGKLRVALDIFCWM-VSRRVTPD 385
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 86/405 (21%), Positives = 158/405 (39%), Gaps = 55/405 (13%)
Query: 65 QDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKR 124
+ +I + + LH L N +A+ + + P+ V N+LI L N L
Sbjct: 138 EPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLI---DGLCKNGELNI 194
Query: 125 AFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFL 184
A ++ +EK D T +TLL + + + A +++ M K R P + L
Sbjct: 195 AL-ELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMK-RSINPDVVTFTAL 252
Query: 185 VDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVI 244
+D+ K N ++++E + ++D PN N+ + G C + DA+K
Sbjct: 253 IDVFVKQGNLDEAQELYKEMIQSSVD-------PNNVTYNSIINGLCMH-GRLYDAKKTF 304
Query: 245 ETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304
+ M+ G PN ++ L + + ++ ++L M+ GF++ + Y++LI GY ++
Sbjct: 305 DLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQV 364
Query: 305 GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGI 364
G L A + C D T+C ++ G NG ++
Sbjct: 365 GKLRVALD--IFCWMVSRRVTPDII--THCILLHGLCVNGEIE----------------- 403
Query: 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQ 424
SA V D+M +G+ Y + CK + +A +
Sbjct: 404 -----------SALVK----------FDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWE 442
Query: 425 LVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI 469
L + G++ D Y +I + + A L R M+E I
Sbjct: 443 LFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGI 487
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 451 SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH 510
S F+ AF+LF +M ++ + ++T R E + F + +E + +
Sbjct: 49 SIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYF-SQKMELYGISHDLY 107
Query: 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554
+ +IH FC+ RL A L +M+ L +EP+ T+ SL++G+
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGF 151
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 89/408 (21%), Positives = 170/408 (41%), Gaps = 40/408 (9%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+P++ N L G C +++ E +++ G GFL + V
Sbjct: 173 QPDVVTFNTLLHGLCL-------EDRISEALALFGYMVET---GFL-----------EAV 211
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV 336
L M E G + ++ +++LI+G G + A+ + +G G TY +
Sbjct: 212 ALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKG----LHIDVVTYGTI 267
Query: 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNA 396
V G + G+ K NL+ K+E + I D + II G A + EM
Sbjct: 268 VNGMCKMGDTKSALNLL---SKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLE 324
Query: 397 CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456
G + + Y + +C R ++A +L+ D+ + DV ++ALI AS+
Sbjct: 325 KGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFE 384
Query: 457 AFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516
A L +M I+ +Y +++ G +++R + D ++ P V +N+II
Sbjct: 385 AEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFD-LMASPDVVT----FNTII 439
Query: 517 HAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIST 576
+C+A R+++ + LR + N TY +LI+G+ + + ++ E+ IS
Sbjct: 440 DVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEM---IS- 495
Query: 577 DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY 624
G+ + + LY + + +++ E Q K+ +D Y
Sbjct: 496 ---HGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAY 540
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 8/202 (3%)
Query: 410 LKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI 469
+ YC+ R E QL+ +IS GL + Y+ LI + +A LF++M +
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498
Query: 470 YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAK 529
+ ++ G EN + E A L EV++ ++++ T +N IIH CK ++++A
Sbjct: 499 CPDTITCNILLYGFCENEKLE-EALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAW 557
Query: 530 RTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV 589
+ EP+ QTY +I+G+ +++H++K G + +++
Sbjct: 558 DLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMK-------DNGHEPDNSTY 610
Query: 590 DAFLYALVKGGFFDAVMQVVEK 611
+ + +K G D ++++ +
Sbjct: 611 NTLIRGCLKAGEIDKSIELISE 632
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 21/180 (11%)
Query: 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG 433
+I V + D A S+ +M + + + +K +C H+ + + ++ G
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171
Query: 434 LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMA 493
Q DV ++ L+ A +LF M E TG +E
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVE--------------TGFLE------AV 211
Query: 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
A D++VE V +N++I+ C GR+ +A + +M+ + TY +++NG
Sbjct: 212 ALFDQMVEIGLTPVVI-TFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 270
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/250 (18%), Positives = 103/250 (41%), Gaps = 16/250 (6%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277
P+ N+ + G C DA+ + + M+ P+ +F + +Y ++ ++
Sbjct: 399 PDTVTYNSMIYGFCKH-NRFDDAKHMFDLMA----SPDVVTFNTIIDVYCRAKRVDEGMQ 453
Query: 278 LESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV 337
L ++ G + Y++LI G+ ++ NL +A + G + C ++
Sbjct: 454 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDT-----ITCNIL 508
Query: 338 -KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLS-DKAHSILDEMN 395
GF +N ++ L + ++ S I +D +V + II + G D+A + +
Sbjct: 509 LYGFCENEKLEEALELF---EVIQMSKIDLD-TVAYNIIIHGMCKGSKVDEAWDLFCSLP 564
Query: 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ 455
G + Y + +C + ++A L + +G + D Y+ LI + + +
Sbjct: 565 IHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEID 624
Query: 456 SAFSLFRDMR 465
+ L +MR
Sbjct: 625 KSIELISEMR 634
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
++P++ N + G C G ++SDA + M G P+ S++ L G +K
Sbjct: 568 VEPDVQTYNVMISGFC-GKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKS 626
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTIL 315
+EL S M GFS F +++ + G L+ + +L
Sbjct: 627 IELISEMRSNGFSGD-AFTIKMVADLITDGRLDKSFSDML 665
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQT 546
+RP++ A L +E R+ + + +N +I FC +L + T ++ L F+P+ T
Sbjct: 120 NRPDV-AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVT 178
Query: 547 YLSLINGYVTAEQYFSVLMMW 567
+ +L++G ++ L ++
Sbjct: 179 FNTLLHGLCLEDRISEALALF 199
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 157/376 (41%), Gaps = 51/376 (13%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY-LYALKGLQEKIV 276
P+I N+ L G C+G +S+A +++ M +G +P+ +F L + L+ E +
Sbjct: 143 PSIVTLNSLLNGFCHG-NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVA 201
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET--YC 334
+E ++ + G +V Y ++I+G K G + A + ME+ + Y
Sbjct: 202 LVERMVVK-GCQPDLVTYGAVINGLCKRGEPDLALNLL------NKMEKGKIEADVVIYN 254
Query: 335 EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG--------LSD- 385
++ G + ++ +L K+E GI D +IS N G LSD
Sbjct: 255 TIIDGLCKYKHMDDAFDLF---NKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDM 311
Query: 386 --------------------------KAHSILDEM-NACGCSVGLGVYVPTLKAYCKEHR 418
+A + DEM + C + Y +K +CK R
Sbjct: 312 LEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKR 371
Query: 419 TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT 478
E ++ ++S GL + Y LI ++D +A +F+ M ++ +Y
Sbjct: 372 VEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNI 431
Query: 479 IMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538
++ GL N E A + E ++ +++ + ++I A CKAG++ED +
Sbjct: 432 LLDGLCNNGNVE-TALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490
Query: 539 QFEPNDQTYLSLINGY 554
+PN TY ++++G+
Sbjct: 491 GVKPNVVTYTTMMSGF 506
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/338 (21%), Positives = 141/338 (41%), Gaps = 9/338 (2%)
Query: 237 VSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296
+S A ++ M LG P+ + L + + V L M E G+ V +++
Sbjct: 126 LSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTT 185
Query: 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEA 356
L+ G + A + + G Q D TY V+ G + G NL+
Sbjct: 186 LVHGLFQHNKASEAVALVERMVVKGC--QPDLV--TYGAVINGLCKRGEPDLALNLL--- 238
Query: 357 QKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE 416
K+E I D + II D A + ++M G + Y P + C
Sbjct: 239 NKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNY 298
Query: 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR-IYDLKGS 475
R ++A++L+ D+ + D+ ++ALI+A + A L+ +M +++ + +
Sbjct: 299 GRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVA 358
Query: 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRM 535
Y T++ G + R E E+ + V T + ++IH F +A ++A+ ++M
Sbjct: 359 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVG-NTVTYTTLIHGFFQARDCDNAQMVFKQM 417
Query: 536 IFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
+ P+ TY L++G + L+++ ++++
Sbjct: 418 VSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKR 455
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 88/433 (20%), Positives = 167/433 (38%), Gaps = 52/433 (12%)
Query: 101 PSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAP 160
PS NSL L+ + + A A V ++E + D T TL+ + N A+
Sbjct: 143 PSIVTLNSL---LNGFCHGNRISEAVALVDQMVEMGYQP-DTVTFTTLVHGLFQHNKASE 198
Query: 161 AFALVKCMFKNRYFMPFELWGGFLVDICRKN------------------SNFVAFLKVFE 202
A ALV+ M +G + +C++ ++ V + + +
Sbjct: 199 AVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIID 258
Query: 203 ECCRIA-LDENLDF--------MKPNIYACNAALEGCC-YGLQSVSDAEKVIETMSVLGV 252
C+ +D+ D +KP+++ N + C YG SDA +++ M +
Sbjct: 259 GLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYG--RWSDASRLLSDMLEKNI 316
Query: 253 RPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ----MVFYSSLISGYVKLGNLE 308
P+ F L + +G K+VE E L +E S +V Y++LI G+ K +E
Sbjct: 317 NPDLVFFNALIDAFVKEG---KLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVE 373
Query: 309 SASRTILLCLGGGNMEQSDF--SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVV 366
M Q + TY ++ GF Q + N + +++ G+
Sbjct: 374 EGMEVFR------EMSQRGLVGNTVTYTTLIHGFFQ---ARDCDNAQMVFKQMVSDGVHP 424
Query: 367 DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV 426
D ++ N G + A + + M + + Y ++A CK + + L
Sbjct: 425 DIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLF 484
Query: 427 MDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486
+S G++ +V Y ++ + A +LF +M+E G+Y T++ + +
Sbjct: 485 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRD 544
Query: 487 HRPELMAAFLDEV 499
A + E+
Sbjct: 545 GDEAASAELIKEM 557
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 90/414 (21%), Positives = 165/414 (39%), Gaps = 58/414 (14%)
Query: 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAF--LKVF 201
T +TL+ + N A+ A ALV M +G + +C++ +A LK
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM 247
Query: 202 EECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGF 261
E+ ++P + N ++ C ++V+DA + M G+RPN ++
Sbjct: 248 EQ----------GKIEPGVVIYNTIIDALC-NYKNVNDALNLFTEMDNKGIRPNVVTYNS 296
Query: 262 LAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGG 321
L G L S M E + +V +S+LI +VK G L A + L
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK-----LYDE 351
Query: 322 NMEQS-DFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN 380
+++S D TY ++ GF + +
Sbjct: 352 MIKRSIDPDIFTYSSLINGFCMHDRL---------------------------------- 377
Query: 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440
D+A + + M + C + Y +K +CK R E +L ++S GL +
Sbjct: 378 ----DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVT 433
Query: 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500
Y LI +++ +A +F+ M + +Y ++ GL N + E A + E +
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVE-TALVVFEYL 492
Query: 501 EDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554
+ ++E + +N +I CKAG++ED + +PN TY ++++G+
Sbjct: 493 QRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 546
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 91/409 (22%), Positives = 170/409 (41%), Gaps = 53/409 (12%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+P+I N+ L G C+G +SDA ++ M +G +P+ +F L + + V
Sbjct: 148 EPDIVTLNSLLNGFCHG-NRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAV 206
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV 336
L M G +V Y +++G K G+++ A + MEQ
Sbjct: 207 ALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL------KKMEQG---------- 250
Query: 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNA 396
K+EP G+V+ + II A N + A ++ EM+
Sbjct: 251 ---------------------KIEP-GVVIYNT----IIDALCNYKNVNDALNLFTEMDN 284
Query: 397 CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456
G + Y ++ C R ++A++L+ D+ + +V + ALI+A +
Sbjct: 285 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 344
Query: 457 AFSLFRDMREARIYDLKGSYLTIMTGL-MENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515
A L+ +M + I +Y +++ G M + E F + +D V T +N++
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT--YNTL 402
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575
I FCKA R+++ R M N TY +LI+G+ A + + +++ +++
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF----KQMV 458
Query: 576 TDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY 624
+DG ++++ L L G + + V E Q K+ D + Y
Sbjct: 459 SDGVLPDIMTYSIL---LDGLCNNGKVETALVVFEYLQRSKMEPDIYTY 504
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/335 (21%), Positives = 147/335 (43%), Gaps = 20/335 (5%)
Query: 245 ETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304
E M LG+ N ++ L + + + + + M + G+ +V +SL++G+
Sbjct: 105 EQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCH- 163
Query: 305 GNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLIIEAQKLEPS 362
GN S + +++ G M + + + T+ ++ G ++ L+ ++
Sbjct: 164 GNRISDAVSLV-----GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALV---DRMVVK 215
Query: 363 GIVVDRSVGFGII-SACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAE 421
G D V +GI+ + G D A S+L +M G+ +Y + A C +
Sbjct: 216 GCQPDL-VTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVND 274
Query: 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481
A L ++ + G++ +V Y++LI + A L DM E +I ++ ++
Sbjct: 275 ALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALID 334
Query: 482 GLMENHRPELMAAFLDEVVE---DPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538
++ + DE+++ DP + ++S+I+ FC RL++AK MI
Sbjct: 335 AFVKEGKLVEAEKLYDEMIKRSIDPDI----FTYSSLINGFCMHDRLDEAKHMFELMISK 390
Query: 539 QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
PN TY +LI G+ A++ + ++ E+ ++
Sbjct: 391 DCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQR 425
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/408 (18%), Positives = 162/408 (39%), Gaps = 25/408 (6%)
Query: 83 NTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDF 142
+ D A K + + P + N++I L + ++ ++ F ++ +
Sbjct: 236 DIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE----MDNKGIRPNV 291
Query: 143 QTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFE 202
T ++L+ + N + A L+ M + R P + L+D K V K+++
Sbjct: 292 VTYNSLIRCLCNYGRWSDASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYD 350
Query: 203 ECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFL 262
E + ++D P+I+ ++ + G C + +A+ + E M PN ++ L
Sbjct: 351 EMIKRSID-------PDIFTYSSLINGFCMH-DRLDEAKHMFELMISKDCFPNVVTYNTL 402
Query: 263 AYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGN 322
+ ++ +EL M++ G V Y++LI G+ + ++A + G
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462
Query: 323 MEQSDFSKETYCEVVKGFLQNGNVKGLANLI--IEAQKLEPSGIVVDRSVGFGIISACVN 380
+ TY ++ G NG V+ + ++ K+EP + +I
Sbjct: 463 LPDI----MTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI-----MIEGMCK 513
Query: 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440
G + + ++ G + Y + +C++ EA L ++ G D G
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGT 573
Query: 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488
Y+ LI A + D ++ L R+MR R S + ++T ++ + R
Sbjct: 574 YNTLIRAHLRDGDKAASAELIREMRSCRFVG-DASTIGLVTNMLHDGR 620
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 454 FQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN 513
A +LF DM ++R + + +++ + + ++ +L+ + L E +++ + + ++
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVIS-LGEQMQNLGISHNLYTYS 120
Query: 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554
+I+ FC+ +L A L +M+ L +EP+ T SL+NG+
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGF 161
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 102/474 (21%), Positives = 189/474 (39%), Gaps = 35/474 (7%)
Query: 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICR-KNSNFVAFL 198
LDFQT + + ++ P L+K + +R L+ ++ R + + + F
Sbjct: 100 LDFQTQCLAIAVISKLSSPKPVTQLLKEVVTSRKNSIRNLFDELVLAHDRLETKSTILFD 159
Query: 199 KVFEECCRIAL-DENLD---FMK-----PNIYACNAALEGCCYGLQSVSDAEKVIETMSV 249
+ CC++ + DE ++ MK P CN L L + +A M
Sbjct: 160 LLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILT-LLSRLNRIENAWVFYADMYR 218
Query: 250 LGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309
+ ++ N +F + + +G +K +M FG +V Y++L+ G+ G +E
Sbjct: 219 MEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEG 278
Query: 310 ASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD 367
A I M+ F + TY ++ G + ++++ G+V D
Sbjct: 279 ARLII------SEMKSKGFQPDMQTYNPILSWMCNEGRASEVL------REMKEIGLVPD 326
Query: 368 RSVGFGI-ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV 426
SV + I I C N G + A + DEM G Y + E++ A L+
Sbjct: 327 -SVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILI 385
Query: 427 MDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486
+I G+ LD Y+ LI D + AF+L +M I + +Y +++ L
Sbjct: 386 REIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRK 445
Query: 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQT 546
++ ++VV ++ N+++ C G ++ A L+ M + P+D T
Sbjct: 446 NKTREADELFEKVV-GKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVT 504
Query: 547 YLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGG 600
Y L+ G ++ + E+KR +GIK +H + + K G
Sbjct: 505 YNCLMRGLCGEGKFEEARELMGEMKR-------RGIKPDHISYNTLISGYSKKG 551
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 153/369 (41%), Gaps = 39/369 (10%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
+K N+Y N + C + A+ + M V G++P ++ L ++L+G E
Sbjct: 221 IKSNVYTFNIMINVLCKE-GKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGA 279
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNL--------------ESASRTILL--CLG 319
+ S M GF M Y+ ++S G +S S IL+ C
Sbjct: 280 RLIISEMKSKGFQPDMQTYNPILSWMCNEGRASEVLREMKEIGLVPDSVSYNILIRGCSN 339
Query: 320 GGNME-----QSDFSKE-------TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD 367
G++E + + K+ TY ++ G ++ LI E ++ GIV+D
Sbjct: 340 NGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIRE---KGIVLD 396
Query: 368 RSVGFGI-ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV 426
SV + I I+ G + KA ++ DEM G Y + C++++T EA +L
Sbjct: 397 -SVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELF 455
Query: 427 MDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486
+ G++ D+ + L++ + AFSL ++M I +Y +M GL
Sbjct: 456 EKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGE 515
Query: 487 HRPELMAAFLDEVVEDPRVEVKTH--DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544
+ E + E+ R +K +N++I + K G + A M+ L F P
Sbjct: 516 GKFEEARELMGEM---KRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTL 572
Query: 545 QTYLSLING 553
TY +L+ G
Sbjct: 573 LTYNALLKG 581
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 119/315 (37%), Gaps = 40/315 (12%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+P++ N L C + A +V+ M +G+ P+ S+ L + G E
Sbjct: 292 QPDMQTYNPILSWMC----NEGRASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAF 347
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV 336
M + G Y++LI G +E+A I G + S TY +
Sbjct: 348 AYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDS----VTYNIL 403
Query: 337 VKGFLQNGNVK----------------------GLANLIIEAQKLEPSGIVVDRSVGFG- 373
+ G+ Q+G+ K L ++ K + + ++ VG G
Sbjct: 404 INGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGM 463
Query: 374 ---------IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQ 424
++ +G D+A S+L EM+ + Y ++ C E + EA +
Sbjct: 464 KPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARE 523
Query: 425 LVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484
L+ ++ G++ D +Y+ LI D + AF + +M +Y ++ GL
Sbjct: 524 LMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLS 583
Query: 485 ENHRPELMAAFLDEV 499
+N EL L E+
Sbjct: 584 KNQEGELAEELLREM 598
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 88/399 (22%), Positives = 161/399 (40%), Gaps = 39/399 (9%)
Query: 179 LWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMK-----PNIYACNAALEGCCYG 233
++ +++D+CR N EE ++ + MK PN+Y +A ++G C
Sbjct: 236 IYTIYILDLCRDNK--------MEEA-----EKMFELMKKHGVLPNLYTYSAMIDGYC-K 281
Query: 234 LQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESL---MNEFGFSSQ 290
+V A + + + V + PN FG L + ++V SL M +FG
Sbjct: 282 TGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKA---RELVTARSLFVHMVKFGVDPN 338
Query: 291 MVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKG 348
+ Y+ LI G+ K GN+ A + ME + S + TY ++ G V
Sbjct: 339 LYVYNCLIHGHCKSGNMLEAVGLL------SEMESLNLSPDVFTYTILINGLCIEDQVAE 392
Query: 349 LANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408
L QK++ I + +I ++A + EM A G + +
Sbjct: 393 ANRLF---QKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFST 449
Query: 409 TLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468
+ YC A L +++ G+ DV Y ALI+A + + A L+ DM EA
Sbjct: 450 LIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAG 509
Query: 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH-DWNSIIHAFCKAGRLED 527
I+ ++ ++ G + R + F E + + H + +I C+ G +
Sbjct: 510 IHPNDHTFACLVDGFWKEGRLSVAIDFYQE--NNQQRSCWNHVGFTCLIEGLCQNGYILR 567
Query: 528 AKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMM 566
A R M P+ +Y+S++ G++ ++ +M+
Sbjct: 568 ASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMML 606
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 96/209 (45%), Gaps = 7/209 (3%)
Query: 354 IEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY 413
++ Q + G+V D + F + C GL K +LDEM + G + +Y +
Sbjct: 185 VDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDL 244
Query: 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLK 473
C++++ EA ++ + G+ ++ Y A+I+ + + + A+ L++++ A +
Sbjct: 245 CRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNV 304
Query: 474 GSYLTIMTGLMENHRPELMAAFLDEVVE---DPRVEVKTHDWNSIIHAFCKAGRLEDAKR 530
+ T++ G + + +V+ DP + V +N +IH CK+G + +A
Sbjct: 305 VVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYV----YNCLIHGHCKSGNMLEAVG 360
Query: 531 TLRRMIFLQFEPNDQTYLSLINGYVTAEQ 559
L M L P+ TY LING +Q
Sbjct: 361 LLSEMESLNLSPDVFTYTILINGLCIEDQ 389
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 126/348 (36%), Gaps = 86/348 (24%)
Query: 230 CCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSS 289
CC+ S EK+++ M+ LG++PN ++ +Y L ++ +E M E
Sbjct: 208 CCFKQGLYSKKEKLLDEMTSLGIKPNV----YIYTIYILDLCRDNKMEEAEKMFE----- 258
Query: 290 QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVK-- 347
L+ + L NL TY ++ G+ + GNV+
Sbjct: 259 -------LMKKHGVLPNLY-----------------------TYSAMIDGYCKTGNVRQA 288
Query: 348 -GLANLIIEAQKLEPSGIVVDRSV-GFGIISACVNLGLSDKAHSILDEMNACGCSVGLGV 405
GL I+ A+ L P+ +V V GF V A S+ M G L V
Sbjct: 289 YGLYKEILVAELL-PNVVVFGTLVDGFCKARELVT------ARSLFVHMVKFGVDPNLYV 341
Query: 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR 465
Y + +CK EA L+ ++ S L DV Y LI A LF+ M+
Sbjct: 342 YNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMK 401
Query: 466 EARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRL 525
RI+ +Y NS+IH +CK +
Sbjct: 402 NERIFPSSATY------------------------------------NSLIHGYCKEYNM 425
Query: 526 EDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
E A M EPN T+ +LI+GY + + ++ E+ K
Sbjct: 426 EQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIK 473
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 91/438 (20%), Positives = 177/438 (40%), Gaps = 82/438 (18%)
Query: 205 CRIALDENLDF--------MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNE 256
C+ + + LDF + I +CN L+G + + A +++ + G PN
Sbjct: 229 CKGEVTKALDFHRLVMERGFRVGIVSCNKVLKG--LSVDQIEVASRLLSLVLDCGPAPNV 286
Query: 257 SSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESA------ 310
+F L + +G ++ +L +M + G ++ YS+LI GY K G L
Sbjct: 287 VTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQ 346
Query: 311 -------------SRTILLCLGGGNMEQSDFSKE------------TYCEVVKGFLQNGN 345
S TI + + G++ + + TY ++KG Q+G
Sbjct: 347 ALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGR 406
Query: 346 VK---GLANLIIEAQKLEPSGIVVDRSV-----------GFGIISACVNLG--------- 382
+ G+ I++ + +EPS + + GF + + +G
Sbjct: 407 IYEAFGMYGQILK-RGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYG 465
Query: 383 -----LSDKA---HSILDEMNACGCSVGLGVYV--PTLKAYCKEHRTAEATQLVMDISSS 432
LS + H++ + G S+ L V V + +C+ +R EA ++ +
Sbjct: 466 VLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIY 525
Query: 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM 492
G++ DV + ++ SI + A LF M + + +Y T++ ++ +P +
Sbjct: 526 GIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIG 585
Query: 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN 552
D +++ ++ N +IH K R+EDA + +I + EP+ TY ++I
Sbjct: 586 LQLFD-LMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMIC 644
Query: 553 GYVT------AEQYFSVL 564
GY + AE+ F +L
Sbjct: 645 GYCSLRRLDEAERIFELL 662
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 135/338 (39%), Gaps = 47/338 (13%)
Query: 251 GVRPNE-SSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309
G+ P+ S+ GF+ KG K ++ L+ E GF +V + ++ G + + +E
Sbjct: 211 GIEPSGVSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKG-LSVDQIEV 269
Query: 310 ASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANL--IIEAQKLEPS----- 362
ASR + L L G T+C ++ GF + G + +L ++E + +EP
Sbjct: 270 ASRLLSLVLDCGPAPNV----VTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYS 325
Query: 363 -------------------------GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397
G+ +D V I V G A + M
Sbjct: 326 TLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQ 385
Query: 398 GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSA 457
G S + Y +K C++ R EA + I G++ + Y +LI+ + +S
Sbjct: 386 GISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSG 445
Query: 458 FSLFRDMREARIYDLKGSYLTIMTGLMEN----HRPELMAAFLDEVVEDPRVEVKTHDWN 513
F+L+ DM + Y ++ GL + H L + + R+ V +N
Sbjct: 446 FALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSI---RLNVVV--FN 500
Query: 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLI 551
S+I +C+ R ++A + R M +P+ T+ +++
Sbjct: 501 SLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVM 538
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 138/333 (41%), Gaps = 17/333 (5%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275
++ N+ N+ ++G C L +A KV M + G++P+ ++F + + ++G E+
Sbjct: 492 IRLNVVVFNSLIDGWCR-LNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEA 550
Query: 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335
+ L M + G + Y +LI + K +++ L L N +D + C
Sbjct: 551 LFLFFRMFKMGLEPDALAYCTLIDAFCK--HMKPTIGLQLFDLMQRNKISADIA---VCN 605
Query: 336 VVKGFL----QNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSIL 391
VV L + + N +IE K+EP + + +I +L D+A I
Sbjct: 606 VVIHLLFKCHRIEDASKFFNNLIEG-KMEPDIVTYNT-----MICGYCSLRRLDEAERIF 659
Query: 392 DEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS 451
+ + + CK + A ++ ++ G + + Y L++ S
Sbjct: 660 ELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSKS 719
Query: 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511
D + +F LF +M+E I SY I+ GL + R + + + D ++
Sbjct: 720 VDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAI-DAKLLPDVVA 778
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544
+ +I +CK GRL +A M+ +P+D
Sbjct: 779 YAILIRGYCKVGRLVEAALLYEHMLRNGVKPDD 811
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 92/434 (21%), Positives = 153/434 (35%), Gaps = 72/434 (16%)
Query: 237 VSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQE--KIVELESLMNEF---GFSSQM 291
++ A V + M G+ PN + Y +KGL + +I E + + G +
Sbjct: 372 LATASVVYKRMLCQGISPN-----VVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSI 426
Query: 292 VFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE--VVKGFLQNGNVKGL 349
V YSSLI G+ K GNL S G D K Y V+ G L +G K
Sbjct: 427 VTYSSLIDGFCKCGNLRS-----------GFALYEDMIKMGYPPDVVIYGVLVDGLSK-- 473
Query: 350 ANLIIEAQ----KLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGV 405
L++ A K+ I ++ V +I L D+A + M G +
Sbjct: 474 QGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVAT 533
Query: 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR 465
+ ++ E R EA L + GL+ D Y LI+A LF M+
Sbjct: 534 FTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQ 593
Query: 466 EARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS----------- 514
+I ++ L + HR E + F + ++E ++E +N+
Sbjct: 594 RNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEG-KMEPDIVTYNTMICGYCSLRRL 652
Query: 515 ------------------------IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSL 550
+IH CK ++ A R M +PN TY L
Sbjct: 653 DEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCL 712
Query: 551 INGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVE 610
++ + + ++ E++ +KGI + L K G D +
Sbjct: 713 MDWFSKSVDIEGSFKLFEEMQ-------EKGISPSIVSYSIIIDGLCKRGRVDEATNIFH 765
Query: 611 KSQEMKVFVDKWKY 624
++ + K+ D Y
Sbjct: 766 QAIDAKLLPDVVAY 779
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 1/152 (0%)
Query: 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481
A++L+ + G +V + LI + AF LF+ M + I +Y T++
Sbjct: 270 ASRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLID 329
Query: 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541
G + + + + V++ ++S I + K+G L A +RM+
Sbjct: 330 GYFKAGMLGMGHKLFSQALHKG-VKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGIS 388
Query: 542 PNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
PN TY LI G + + M+ +I ++
Sbjct: 389 PNVVTYTILIKGLCQDGRIYEAFGMYGQILKR 420
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 147/362 (40%), Gaps = 53/362 (14%)
Query: 216 MKPNIYACNAALEGCCYGLQSVSDAE-KVIETMSVLGVRPNESSFGFLAYLYALKGLQEK 274
+KP++ AC L Q ++D K+ + M LGV N + L + + G EK
Sbjct: 164 LKPHLQACTVLLNSLVK--QRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEK 221
Query: 275 IVELESLMNEFGFSSQMVFYSSLISGYVKLG-NLESASRTILLCLGGGNMEQSDFSKE-- 331
+L S M E G + Y++LIS Y K + E+ S ME+S +
Sbjct: 222 AEKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQ-------DRMERSGVAPNIV 274
Query: 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSIL 391
TY + GF + G ++ L E + + + +I + D+A +
Sbjct: 275 TYNSFIHGFSREGRMREATRLFREIK----DDVTANHVTYTTLIDGYCRMNDIDEALRLR 330
Query: 392 DEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS 451
+ M + G S G+ Y L+ C++ R EA +L+ ++S ++ D + LI A
Sbjct: 331 EVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMSGKKIEPDNITCNTLINAYCKI 390
Query: 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511
+D SA + + M I +GL ++ +
Sbjct: 391 EDMVSAVKVKKKM--------------IESGL----------------------KLDMYS 414
Query: 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571
+ ++IH FCK LE+AK L MI F P TY L++G+ + + + E +
Sbjct: 415 YKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFE 474
Query: 572 RK 573
++
Sbjct: 475 KR 476
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 122/268 (45%), Gaps = 21/268 (7%)
Query: 357 QKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE 416
+K+ G+V + V ++ AC G +KA +L EM G + Y + YCK+
Sbjct: 192 KKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCKK 251
Query: 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSY 476
EA + + SG+ ++ Y++ I + A LFR++++ D+ ++
Sbjct: 252 SMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIKD----DVTANH 307
Query: 477 LTIMTGLMENHRPELM--AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRR 534
+T T + R + A L EV+E +NSI+ C+ GR+ +A R L
Sbjct: 308 VTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTE 367
Query: 535 MIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLY 594
M + EP++ T +LIN Y E S + ++K+K+ G K +D + Y
Sbjct: 368 MSGKKIEPDNITCNTLINAYCKIEDMVSAV----KVKKKMIESGLK--------LDMYSY 415
Query: 595 -ALVKGGFFDAVMQVVEKSQEMKVFVDK 621
AL+ G F V+++ +E+ ++K
Sbjct: 416 KALIHG--FCKVLELENAKEELFSMIEK 441
Score = 33.1 bits (74), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 77/414 (18%), Positives = 138/414 (33%), Gaps = 77/414 (18%)
Query: 84 TDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQ 143
TD WK FK + + + V N L+ S D ++ + +E+ D
Sbjct: 184 TDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSE----MEEKGVFPDIF 239
Query: 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRK------------- 190
T +TL+ + A ++ M ++ + F+ R+
Sbjct: 240 TYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREI 299
Query: 191 ----NSNFVAFLKVFEECCRI-ALDENLDFMK--------PNIYACNAALEGCCYGLQSV 237
+N V + + + CR+ +DE L + P + N+ L C +
Sbjct: 300 KDDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCED-GRI 358
Query: 238 SDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSL 297
+A +++ MS + P+ + L Y V+++ M E G M Y +L
Sbjct: 359 REANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKAL 418
Query: 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSK--ETYCEVVKGFLQNGNVKGLANLIIE 355
I G+ K+ LE+A + +M + FS TY +V GF
Sbjct: 419 IHGFCKVLELENAKEELF------SMIEKGFSPGYATYSWLVDGFY-------------- 458
Query: 356 AQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK 415
N D+ +L+E G + +Y ++ CK
Sbjct: 459 ------------------------NQNKQDEITKLLEEFEKRGLCADVALYRGLIRRICK 494
Query: 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI 469
+ A L + GL D + + A + A +LF M R+
Sbjct: 495 LEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASALFDVMYNRRL 548
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 99/482 (20%), Positives = 198/482 (41%), Gaps = 42/482 (8%)
Query: 71 LETNLHKSLL--TNNTDEAWKSFKSLTANSLFPSKPVT---NSLIAHL-------SSLQD 118
+E +L K+LL TNN AW+ FK + ++ S ++ IA + +Q+
Sbjct: 1 MEQSLVKALLKNTNNPRLAWRIFKRIFSSPSEESHGISLDATPTIARILVRAKMHEEIQE 60
Query: 119 NHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFE 178
HNL +S + + KL +V ++ + + A P F LV+ F P
Sbjct: 61 LHNL--ILSSSI----QKTKLSSLLSVVSIFAKSNHIDKAFPQFQLVRSRFPEN--KPSV 112
Query: 179 LWGGFLVDICRKNSN--FVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQS 236
L++ C K FV++L C IA P Y N + C
Sbjct: 113 YLYNLLLESCIKERRVEFVSWLYKDMVLCGIA---------PQTYTFNLLIRALCDS-SC 162
Query: 237 VSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296
V A ++ + M G +PNE +FG L Y GL +K +EL + M FG V Y++
Sbjct: 163 VDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNT 222
Query: 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLII 354
++S + + G + + + + M + + T+ + + G V + +
Sbjct: 223 IVSSFCREGRNDDSEKMV------EKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFS 276
Query: 355 EAQKLEPSGIVVDRSVGFGI-ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY 413
+ + E G+ S+ + + + +GL + A ++ + + L Y L+
Sbjct: 277 DMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGL 336
Query: 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLK 473
+ + EA ++ ++ G+ + +Y+ L++ A ++ M+ +
Sbjct: 337 VRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDA 396
Query: 474 GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLR 533
+Y ++ G + + + L E++ + + + N ++H+ K GR+ +A+ LR
Sbjct: 397 VTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLP-NAYTCNILLHSLWKMGRISEAEELLR 455
Query: 534 RM 535
+M
Sbjct: 456 KM 457
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 108/471 (22%), Positives = 174/471 (36%), Gaps = 92/471 (19%)
Query: 182 GFLVDICRKNSNFVAFLK---------VFEECCRIALDENLDFMKPNIYACNAALEGCC- 231
G + DI NS A K +F + + LDE L +PN N L+G C
Sbjct: 247 GLVPDIVTFNSRISALCKEGKVLDASRIFSD---MELDEYLGLPRPNSITYNLMLKGFCK 303
Query: 232 YGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL--QEKIVELESL---MNEFG 286
GL + DA+ + E+ +R N+ +Y L+GL K +E E++ M + G
Sbjct: 304 VGL--LEDAKTLFES-----IRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKG 356
Query: 287 FSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNG 344
+ Y+ L+ G KLG L A +TI+ G M+++ + TY ++ G+ G
Sbjct: 357 IGPSIYSYNILMDGLCKLGMLSDA-KTIV-----GLMKRNGVCPDAVTYGCLLHGYCSVG 410
Query: 345 NVKGLANLIIEA--------------------------------QKLEPSGIVVDRSVGF 372
V +L+ E +K+ G +D
Sbjct: 411 KVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCN 470
Query: 373 GIISACVNLGLSDKAHSILDEMNACG-----------------------CSVGLGVYVPT 409
I+ G DKA I+ M G C L Y
Sbjct: 471 IIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTL 530
Query: 410 LKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI 469
L CK R AEA L ++ LQ D Y+ I SAF + +DM +
Sbjct: 531 LNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGC 590
Query: 470 YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAK 529
+ +Y +++ GL ++ + +DE+ E + +N+ I C+ ++EDA
Sbjct: 591 HKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKG-ISPNICTYNTAIQYLCEGEKVEDAT 649
Query: 530 RTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK 580
L M+ PN ++ LI + + M + +S GQK
Sbjct: 650 NLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFD---MAQEVFETAVSICGQK 697
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 95/422 (22%), Positives = 158/422 (37%), Gaps = 89/422 (21%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKG------- 270
P+IY+ N ++G C L +SDA+ ++ M GV P+ ++G L + Y G
Sbjct: 359 PSIYSYNILMDGLCK-LGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKS 417
Query: 271 -LQE------------------------KIVELESL---MNEFGFSSQMVFYSSLISGYV 302
LQE +I E E L MNE G+ V + ++ G
Sbjct: 418 LLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLC 477
Query: 303 KLGNLESASRTI----------LLCLGGGNMEQSDFSKE---------TYCEVVKGFLQN 343
G L+ A + L LG + D S TY ++ G +
Sbjct: 478 GSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKA 537
Query: 344 GNVKGLANLIIE--AQKLEPSGIVVDR-----------SVGFGII--------------- 375
G NL E +KL+P + + S F ++
Sbjct: 538 GRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETY 597
Query: 376 -SACVNLGLSDKA---HSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS 431
S + LG+ ++ H ++DEM G S + Y ++ C+ + +AT L+ ++
Sbjct: 598 NSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQ 657
Query: 432 SGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491
+ +V ++ LIEA DF A +F I K ++M + L
Sbjct: 658 KNIAPNVFSFKYLIEAFCKVPDFDMAQEVFE--TAVSICGQKEGLYSLMFNELLAAGQLL 715
Query: 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLI 551
A L E V D E+ T + ++ + CK LE A L +MI + + + +I
Sbjct: 716 KATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVI 775
Query: 552 NG 553
+G
Sbjct: 776 DG 777
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 1/148 (0%)
Query: 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464
+Y L++ KE R + L D+ G+ ++ LI A S +A LF +M
Sbjct: 114 LYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEM 173
Query: 465 REARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR 524
E + ++ ++ G + + L+ +E V +N+I+ +FC+ GR
Sbjct: 174 PEKGCKPNEFTFGILVRGYCKAGLTDKGLELLN-AMESFGVLPNKVIYNTIVSSFCREGR 232
Query: 525 LEDAKRTLRRMIFLQFEPNDQTYLSLIN 552
+D+++ + +M P+ T+ S I+
Sbjct: 233 NDDSEKMVEKMREEGLVPDIVTFNSRIS 260
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 122/571 (21%), Positives = 221/571 (38%), Gaps = 78/571 (13%)
Query: 85 DEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQT 144
++A F + A+ L P SLI N+++ + +V + ++N + + T
Sbjct: 364 EKAKALFDGMIASGLIPQAQAYASLIEGYCR---EKNVRQGYELLVEMKKRNIVISPY-T 419
Query: 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEEC 204
T++ M ++ A+ +VK M + P + L+ +NS F ++V +E
Sbjct: 420 YGTVVKGMCSSGDLDGAYNIVKEMIASGC-RPNVVIYTTLIKTFLQNSRFGDAMRVLKEM 478
Query: 205 CRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVL------GVRPNESS 258
+ P+I+ N+ + G +S A+++ E S L G++PN +
Sbjct: 479 KEQGI-------APDIFCYNSLIIG-------LSKAKRMDEARSFLVEMVENGLKPNAFT 524
Query: 259 FGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCL 318
+G Y + M E G V + LI+ Y K G + A +
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584
Query: 319 GGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGI-ISA 377
G + + +TY ++ G +N V + +++ GI D +G+ I+
Sbjct: 585 DQGILGDA----KTYTVLMNGLFKNDKVDDAEEIF---REMRGKGIAPD-VFSYGVLING 636
Query: 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD 437
LG KA SI DEM G + + +Y L +C+ +A +L+ ++S GL +
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696
Query: 438 VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMA---- 493
Y +I+ S D AF LF +M+ + Y T++ G + E
Sbjct: 697 AVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG 756
Query: 494 --------------AFLDEVVEDPRVEVKTH-------------------DWNSIIHAFC 520
A ++ V + + E+KT +N +I C
Sbjct: 757 TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLC 816
Query: 521 KAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK 580
K G LE AK +M P TY SL+NGY + + ++ E
Sbjct: 817 KEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI-------AA 869
Query: 581 GIKFEHNLVDAFLYALVKGGFFDAVMQVVEK 611
GI+ +H + + A +K G + +V++
Sbjct: 870 GIEPDHIMYSVIINAFLKEGMTTKALVLVDQ 900
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 114/527 (21%), Positives = 206/527 (39%), Gaps = 71/527 (13%)
Query: 73 TNLHKSLLTNNT-DEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVY 131
T L K+ L N+ +A + K + + P NSLI LS + + A + +V
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAK---RMDEARSFLVE 512
Query: 132 VIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKN 191
++E K F T + A+ A A VK M + L G + + C+K
Sbjct: 513 MVENGLKPNAF-TYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKG 571
Query: 192 SNFVAFLKVFEECC--RIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSV 249
KV E C R +D+ + Y L + V DAE++ M
Sbjct: 572 -------KVIEACSAYRSMVDQGI-LGDAKTYT---VLMNGLFKNDKVDDAEEIFREMRG 620
Query: 250 LGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309
G+ P+ S+G L ++ G +K + M E G + ++ Y+ L+ G+ + G +E
Sbjct: 621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEK 680
Query: 310 ASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS 369
A L +++ + TYC ++ G+ ++G++ L E ++ G+V D
Sbjct: 681 AKEL----LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDE---MKLKGLVPDSF 733
Query: 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV--- 426
V ++ C L ++A +I N GC+ + + K +T T+++
Sbjct: 734 VYTTLVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRL 792
Query: 427 MDISSS--GLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484
MD S G DV Y+ +I+ + ++A LF M+ A + +Y +++ G
Sbjct: 793 MDGSFDRFGKPNDV-TYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYD 851
Query: 485 ENHRPELMAAFLDEVVE---------------------------------------DPRV 505
+ R M DE + D
Sbjct: 852 KMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGC 911
Query: 506 EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN 552
++ +++ F K G +E A++ + M+ LQ+ P+ T + LIN
Sbjct: 912 KLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 98/464 (21%), Positives = 174/464 (37%), Gaps = 120/464 (25%)
Query: 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFL--------------- 262
P Y + ++G C ++ + DA+ ++ M LGV + ++ L
Sbjct: 275 PLKYTYDVLIDGLC-KIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKG 333
Query: 263 -------------AYLY-------ALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYV 302
Y+Y + +G+ EK L M G Q Y+SLI GY
Sbjct: 334 LVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYC 393
Query: 303 KLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPS 362
+ N+ +L+ + N+ S + TY VVKG +G++ G N++ +++ S
Sbjct: 394 REKNVRQGYE-LLVEMKKRNIVISPY---TYGTVVKGMCSSGDLDGAYNIV---KEMIAS 446
Query: 363 GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422
G + + +I + A +L EM G + + Y + K R EA
Sbjct: 447 GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506
Query: 423 TQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI------------- 469
++++ +GL+ + Y A I I + +F SA ++MRE +
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566
Query: 470 YDLKG----------------------SYLTIMTGLMENHR-----------------PE 490
Y KG +Y +M GL +N + P+
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626
Query: 491 LM------------------AAFLDEVVED---PRVEVKTHDWNSIIHAFCKAGRLEDAK 529
+ ++ DE+VE+ P V + +N ++ FC++G +E AK
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVII----YNMLLGGFCRSGEIEKAK 682
Query: 530 RTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
L M PN TY ++I+GY + ++ E+K K
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK 726
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHE 569
+ ++ +I CK RLEDAK L M L ++ TY LI+G + + + HE
Sbjct: 278 YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337
Query: 570 IKRKISTDGQKGIKFEHNLVDAFLYALVKGG-------FFDAVMQ--VVEKSQEMKVFVD 620
+ GI + + D + + K G FD ++ ++ ++Q ++
Sbjct: 338 MV-------SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIE 390
Query: 621 KWKYKQAFMENHKKLKVAKLRKRNF 645
+ ++ + ++ L +++KRN
Sbjct: 391 GYCREKNVRQGYELL--VEMKKRNI 413
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 147/352 (41%), Gaps = 21/352 (5%)
Query: 214 DFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQE 273
D + P++ NA + G C + V A +++ M +PN +F L G
Sbjct: 365 DRIFPSVITYNALINGYCKDGRVVP-AFELLTVMEKRACKPNVRTFNELMEGLCRVGKPY 423
Query: 274 KIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE-- 331
K V L M + G S +V Y+ LI G + G++ +A + + +M D +
Sbjct: 424 KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLL------SSMNCFDIEPDCL 477
Query: 332 TYCEVVKGFLQNGNVK-GLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSI 390
T+ ++ F + G A L + +K GI +D G +I +G + A I
Sbjct: 478 TFTAIINAFCKQGKADVASAFLGLMLRK----GISLDEVTGTTLIDGVCKVGKTRDALFI 533
Query: 391 LD---EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA 447
L+ +M L V + L CK E ++ I+ GL V Y L++
Sbjct: 534 LETLVKMRILTTPHSLNVILDMLSKGCK---VKEELAMLGKINKLGLVPSVVTYTTLVDG 590
Query: 448 SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV 507
I S D +F + M+ + Y I+ GL + R E L ++D V
Sbjct: 591 LIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLL-SAMQDSGVSP 649
Query: 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQ 559
+ ++ + G+L+ A T+R M+ +E ND+ Y SL+ G+V +++
Sbjct: 650 NHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQK 701
Score = 59.3 bits (142), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 1/181 (0%)
Query: 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG 433
+I A + GL DKA ++ DEM GC + Y + C++ + EA + +
Sbjct: 307 LIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDR 366
Query: 434 LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMA 493
+ V Y+ALI AF L M + ++ +M GL +P
Sbjct: 367 IFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAV 426
Query: 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
L ++ D + +N +I C+ G + A + L M EP+ T+ ++IN
Sbjct: 427 HLLKRML-DNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINA 485
Query: 554 Y 554
+
Sbjct: 486 F 486
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 122/297 (41%), Gaps = 23/297 (7%)
Query: 259 FGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCL 318
GFLAY+ + M GF M+ Y ++++ K G E+A + L
Sbjct: 175 LGFLAYVTYRR------------MEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKIL 222
Query: 319 GGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGI-ISA 377
G + S ++ GF + N++ A + + E + SV + I I
Sbjct: 223 KIGFVLDSHIGTS----LLLGFCRGLNLRD-ALKVFDVMSKEVT--CAPNSVSYSILIHG 275
Query: 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD 437
+G ++A + D+M GC Y +KA C +A L ++ G + +
Sbjct: 276 LCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPN 335
Query: 438 VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAF-L 496
V Y LI+ + A + R M + RI+ +Y ++ G ++ R ++ AF L
Sbjct: 336 VHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGR--VVPAFEL 393
Query: 497 DEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553
V+E + +N ++ C+ G+ A L+RM+ P+ +Y LI+G
Sbjct: 394 LTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDG 450
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 124/320 (38%), Gaps = 22/320 (6%)
Query: 279 ESLMNEFGFSSQMVFYSSLISGYVK--LGNLESASRTILLCLGGGNMEQSDF--SKETYC 334
+ L FGF YSSL+ K LG L + ME F Y
Sbjct: 148 DELREVFGFRLNYPCYSSLLMSLAKLDLGFLAYVTYR--------RMEADGFVVGMIDYR 199
Query: 335 EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA-CVNLGLSDKAHSILDE 393
+V +NG + + + K+ G V+D +G ++ C L L D A + D
Sbjct: 200 TIVNALCKNGYTEAAEMFMSKILKI---GFVLDSHIGTSLLLGFCRGLNLRD-ALKVFDV 255
Query: 394 MNA-CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452
M+ C+ Y + C+ R EA L + G Q Y LI+A
Sbjct: 256 MSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRG 315
Query: 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDW 512
AF+LF +M +Y ++ GL + + E ++V+D R+ +
Sbjct: 316 LIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD-RIFPSVITY 374
Query: 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572
N++I+ +CK GR+ A L M +PN +T+ L+ G + + + H +KR
Sbjct: 375 NALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAV---HLLKR 431
Query: 573 KISTDGQKGIKFEHNLVDAF 592
+ I + L+D
Sbjct: 432 MLDNGLSPDIVSYNVLIDGL 451
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 56/255 (21%)
Query: 213 LDFMK-----PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYA 267
L+ MK PN+Y + G C V +AEK++ M GV PN ++ + Y
Sbjct: 604 LELMKLSGCLPNVYPYTIIINGLCQ-FGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYV 662
Query: 268 LKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSD 327
G ++ +E M E G+ YSSL+ G+V L G N E+S
Sbjct: 663 NNGKLDRALETVRAMVERGYELNDRIYSSLLQGFV------------LSQKGIDNSEEST 710
Query: 328 FS----KETYCEVVKGFLQ-----NGNVKGLANLIIE--------------AQKLEPSGI 364
S +ET E + + G + GL ++ Q + G+
Sbjct: 711 VSDIALRETDPECINELISVVEQLGGCISGLCIFLVTRLCKEGRTDESNDLVQNVLERGV 770
Query: 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYC-------KEH 417
+++++ + S C S K H+ E+ G +VP+ K++C KE
Sbjct: 771 FLEKAMDIIMESYC-----SKKKHTKCMELITLVLKSG---FVPSFKSFCLVIQGLKKEG 822
Query: 418 RTAEATQLVMDISSS 432
A +LVM++ +S
Sbjct: 823 DAERARELVMELLTS 837
>sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080,
chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2
SV=1
Length = 576
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 137/332 (41%), Gaps = 44/332 (13%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
KPN+ L C + A +VIE M G+ P+ S++ +L +G +
Sbjct: 103 KPNVAHSTQLLYDLCKA-NRLKKAIRVIELMVSSGIIPDASAYTYLVNQLCKRGNVGYAM 161
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV 336
+L M + G+ S V Y++L+ G LG+L + +
Sbjct: 162 QLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQS-----------------------LQF 198
Query: 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNA 396
V+ +Q G L P+ + F + +A G +D+A +LDE+
Sbjct: 199 VERLMQKG--------------LAPNAF----TYSFLLEAAYKERG-TDEAVKLLDEIIV 239
Query: 397 CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456
G L Y L +CKE RT +A L ++ + G + +V +Y+ L+ ++
Sbjct: 240 KGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEE 299
Query: 457 AFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE-DPRVEVKTHDWNSI 515
A SL +M +Y ++ L + R E L E+ + + + V +N +
Sbjct: 300 ANSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLKEMSKGNHQFRVTATSYNPV 359
Query: 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTY 547
I CK G+++ + L MI+ + +PN+ TY
Sbjct: 360 IARLCKEGKVDLVVKCLDEMIYRRCKPNEGTY 391
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 147/372 (39%), Gaps = 17/372 (4%)
Query: 192 SNFVAFLKVFEECCRI-ALDENLDFMK--------PNIYACNAALEGCCYGLQSVSDAEK 242
SN V + + C + +L+++L F++ PN + + LE Y + +A K
Sbjct: 174 SNTVTYNALVRGLCMLGSLNQSLQFVERLMQKGLAPNAFTYSFLLEAA-YKERGTDEAVK 232
Query: 243 VIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYV 302
+++ + V G PN S+ L + +G + + L + GF + +V Y+ L+
Sbjct: 233 LLDEIIVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLC 292
Query: 303 KLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPS 362
G E A+ ++L + GG+ S TY ++ +G + ++ E K
Sbjct: 293 CDGRWEEAN-SLLAEMDGGDRAPSVV---TYNILINSLAFHGRTEQALQVLKEMSKGNHQ 348
Query: 363 GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH-RTAE 421
V S I C G D LDEM C G Y + + C+ + + E
Sbjct: 349 FRVTATSYNPVIARLCKE-GKVDLVVKCLDEMIYRRCKPNEGTY-NAIGSLCEHNSKVQE 406
Query: 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481
A ++ +S+ Y ++I + + +AF L +M +Y ++
Sbjct: 407 AFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLLYEMTRCGFDPDAHTYSALIR 466
Query: 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541
GL L + E + ++N++I CK R + A M+ +
Sbjct: 467 GLCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMILGLCKIRRTDLAMEVFEMMVEKKRM 526
Query: 542 PNDQTYLSLING 553
PN+ TY L+ G
Sbjct: 527 PNETTYAILVEG 538
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/390 (21%), Positives = 157/390 (40%), Gaps = 24/390 (6%)
Query: 193 NFVAFLKVFEECCRIALDENLDFM--KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVL 250
N +A +K F+ I L ++L M ++Y CN + C Q A + M L
Sbjct: 80 NVIAKMKKFDVV--INLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYL-ASSFLGKMMKL 136
Query: 251 GVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESA 310
G P+ +F L + L E+ + + + M E G +V Y+++I K G++ A
Sbjct: 137 GFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 311 SRTILLCLGGGNMEQSDFSKET--YCEVVKGFLQNGNVKGLANLI--IEAQKLEPSGIVV 366
ME + Y +V G +G + +L+ + +K++P I
Sbjct: 197 LSLF------DQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITF 250
Query: 367 DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV 426
+ +I A V G A + +EM + + Y + +C E EA Q+
Sbjct: 251 N-----ALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMF 305
Query: 427 MDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486
+ + G DV Y +LI + A +F +M + + +Y T++ G +
Sbjct: 306 YLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQV 365
Query: 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE---PN 543
+P + +V V +N ++H C G+++ A M + + PN
Sbjct: 366 GKPNVAQEVFSHMVSRG-VPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPN 424
Query: 544 DQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573
TY L++G + LM++ +++++
Sbjct: 425 IWTYNVLLHGLCYNGKLEKALMVFEDMRKR 454
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/400 (19%), Positives = 150/400 (37%), Gaps = 51/400 (12%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIV 276
+P+I + + G C G + +A ++ M +G++P+ + + G +
Sbjct: 139 EPDIVTFTSLINGFCLG-NRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYAL 197
Query: 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESAS--------RTILLCLGGGNMEQSDF 328
L M +G +V Y+SL++G G A R I + N F
Sbjct: 198 SLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAF 257
Query: 329 SKE-----------------------TYCEVVKGFLQNGNVKGLANLIIEAQKL----EP 361
KE TY ++ GF G V EA+++ E
Sbjct: 258 VKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVD-------EARQMFYLMET 310
Query: 362 SGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAE 421
G D +I+ D A I EM+ G + Y ++ + + +
Sbjct: 311 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNV 370
Query: 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG---SYLT 478
A ++ + S G+ ++ Y+ L+ + + A +F DM++ + + +Y
Sbjct: 371 AQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNV 430
Query: 479 IMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538
++ GL N + E A + E + +++ + II CKAG++++A +
Sbjct: 431 LLHGLCYNGKLE-KALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSK 489
Query: 539 QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDG 578
+PN TY ++I+G H + RK+ DG
Sbjct: 490 GVKPNVVTYTTMISGLFREGLKHEA----HVLFRKMKEDG 525
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 81/403 (20%), Positives = 161/403 (39%), Gaps = 19/403 (4%)
Query: 65 QDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKR 124
+ +I + + ++ L N +EA + + P + ++I SL N ++
Sbjct: 139 EPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTII---DSLCKNGHVNY 195
Query: 125 AFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFL 184
A S+ +E D +L+ + N+ A +L++ M K R P + L
Sbjct: 196 AL-SLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK-RKIKPDVITFNAL 253
Query: 185 VDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVI 244
+D K F+ +++ E R+++ PNI+ + + G C V +A ++
Sbjct: 254 IDAFVKEGKFLDAEELYNEMIRMSI-------APNIFTYTSLINGFCME-GCVDEARQMF 305
Query: 245 ETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304
M G P+ ++ L + + +++ M++ G + + Y++LI G+ ++
Sbjct: 306 YLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQV 365
Query: 305 GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGI 364
G A + G + TY ++ NG VK + + QK E G+
Sbjct: 366 GKPNVAQEVFSHMVSRG----VPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGV 421
Query: 365 VVDR-SVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEAT 423
+ + + C N G +KA + ++M +G+ Y ++ CK + A
Sbjct: 422 APNIWTYNVLLHGLCYN-GKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAV 480
Query: 424 QLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466
L + S G++ +V Y +I A LFR M+E
Sbjct: 481 NLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 83/188 (44%), Gaps = 14/188 (7%)
Query: 440 NYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEV 499
NY ++ + S F A LF M E+R + ++ + + + +++ D +
Sbjct: 39 NYREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHL 98
Query: 500 VEDPRVEVKTHDW---NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556
++ +HD N +++ FC++ + A L +M+ L FEP+ T+ SLING+
Sbjct: 99 ----QIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCL 154
Query: 557 AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616
+ + M +++ + GIK + + + +L K G + + + ++ +
Sbjct: 155 GNRMEEAMSMVNQMV-------EMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYG 207
Query: 617 VFVDKWKY 624
+ D Y
Sbjct: 208 IRPDVVMY 215
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 101/441 (22%), Positives = 183/441 (41%), Gaps = 64/441 (14%)
Query: 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLA-----------YL 265
+P++ + + G C VS+A +I+ M G +P+E ++G + L
Sbjct: 172 RPDLVTVSTLINGLCLK-GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALAL 230
Query: 266 YALKGLQEKIVELE---------------------SLMNEF---GFSSQMVFYSSLISGY 301
+ ++E+ ++ SL NE G + +V YSSLI G
Sbjct: 231 DLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL 290
Query: 302 VKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNV---KGLANLIIEAQK 358
G + ++ + +G + T+ ++ F++ G + K L N +I +
Sbjct: 291 CNDGKWDDGAKMLREMIGRNIIPDV----VTFSALIDVFVKEGKLLEAKELYNEMI-TRG 345
Query: 359 LEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR 418
+ P I + + C++ +A+ + D M + GC + Y + +YCK R
Sbjct: 346 IAPDTITYNSLIDGFCKENCLH-----EANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 400
Query: 419 TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT 478
+ +L +ISS GL + Y+ L+ S +A LF++M + +Y
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460
Query: 479 IMTGLMENHRPELMAAF-LDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF 537
++ GL +N EL A + E ++ R+ + +N IIH C A +++DA +
Sbjct: 461 LLDGLCDNG--ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 538 LQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHN-LVDAFLYAL 596
+P+ TY +I G M++ RK+ DG F +N L+ A L
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLF----RKMKEDGCTPDDFTYNILIRAHL--- 571
Query: 597 VKGGFFDAVMQVVEKSQEMKV 617
GG ++ VE +EMKV
Sbjct: 572 --GG--SGLISSVELIEEMKV 588
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/371 (21%), Positives = 151/371 (40%), Gaps = 21/371 (5%)
Query: 250 LGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309
LG P+ +F L + L+G + V L M E +V S+LI+G G +
Sbjct: 134 LGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSE 193
Query: 310 ASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD 367
A I M + F + TY V+ ++GN +L + ++ VV
Sbjct: 194 ALVLI------DRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247
Query: 368 RSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVM 427
S+ +I + G D A S+ +EM G + Y + C + + + +++
Sbjct: 248 YSI---VIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLR 304
Query: 428 DISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM-EN 486
++ + DV + ALI+ + A L+ +M I +Y +++ G EN
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364
Query: 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQT 546
E F +++ E ++ +I+++CKA R++D R R + PN T
Sbjct: 365 CLHEANQMF--DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTIT 422
Query: 547 YLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVM 606
Y +L+ G+ + + + ++ E+ +G+ L L G + +
Sbjct: 423 YNTLVLGFCQSGKLNAAKELFQEMV-------SRGVPPSVVTYGILLDGLCDNGELNKAL 475
Query: 607 QVVEKSQEMKV 617
++ EK Q+ ++
Sbjct: 476 EIFEKMQKSRM 486
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 137/344 (39%), Gaps = 12/344 (3%)
Query: 237 VSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296
VS+A +++ M + RP+ + L LKG + + L M E+GF V Y
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215
Query: 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET--YCEVVKGFLQNGNVKGLANLII 354
+++ K GN SA L ME+ + Y V+ ++G+ +L
Sbjct: 216 VLNRLCKSGN--SALALDLF----RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFN 269
Query: 355 EAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYC 414
E +E GI D +I N G D +L EM + + + +
Sbjct: 270 E---MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFV 326
Query: 415 KEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG 474
KE + EA +L ++ + G+ D Y++LI+ A +F M
Sbjct: 327 KEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV 386
Query: 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRR 534
+Y ++ + R + E+ + T +N+++ FC++G+L AK +
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIP-NTITYNTLVLGFCQSGKLNAAKELFQE 445
Query: 535 MIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDG 578
M+ P+ TY L++G + L ++ ++++ T G
Sbjct: 446 MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLG 489
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,658,148
Number of Sequences: 539616
Number of extensions: 9253908
Number of successful extensions: 33541
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 29945
Number of HSP's gapped (non-prelim): 1982
length of query: 662
length of database: 191,569,459
effective HSP length: 124
effective length of query: 538
effective length of database: 124,657,075
effective search space: 67065506350
effective search space used: 67065506350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)