Query 038801
Match_columns 662
No_of_seqs 588 out of 3394
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 9.7E-75 2.1E-79 642.8 57.9 545 64-652 47-690 (857)
2 PLN03218 maturation of RBCL 1; 100.0 6.7E-71 1.4E-75 598.4 64.0 524 65-622 367-916 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 3.9E-67 8.4E-72 569.0 64.7 517 99-648 366-909 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 7.1E-68 1.5E-72 574.0 54.9 475 101-618 85-560 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.9E-67 6.3E-72 583.0 55.6 506 65-620 219-725 (857)
6 PLN03081 pentatricopeptide (PP 100.0 7.8E-61 1.7E-65 519.0 54.7 473 138-648 83-557 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-30 5.2E-35 295.2 66.3 534 69-646 330-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-30 8.5E-35 293.4 65.8 541 70-651 297-869 (899)
9 PRK11447 cellulose synthase su 99.9 8.6E-22 1.9E-26 224.8 62.1 531 73-647 117-739 (1157)
10 PRK11447 cellulose synthase su 99.9 1.2E-21 2.7E-26 223.6 62.6 550 63-650 57-702 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.8E-19 4E-24 196.2 58.2 524 81-653 57-711 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 4.1E-21 8.8E-26 185.2 37.4 462 145-647 51-518 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 4.9E-20 1.1E-24 177.8 36.9 445 71-554 51-500 (966)
14 PRK11788 tetratricopeptide rep 99.9 4E-20 8.8E-25 188.5 34.0 295 265-571 44-345 (389)
15 PRK09782 bacteriophage N4 rece 99.9 7.1E-17 1.5E-21 176.2 59.6 548 65-651 75-743 (987)
16 PRK11788 tetratricopeptide rep 99.9 6.3E-20 1.4E-24 187.1 31.9 303 230-545 45-354 (389)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-16 4.2E-21 170.0 52.8 400 183-616 132-572 (615)
18 KOG2002 TPR-containing nuclear 99.9 2.2E-16 4.8E-21 161.1 47.8 192 417-618 544-748 (1018)
19 PRK15174 Vi polysaccharide exp 99.9 8.2E-17 1.8E-21 172.1 46.7 408 224-653 46-469 (656)
20 KOG4422 Uncharacterized conser 99.8 2.5E-16 5.3E-21 146.1 41.8 375 216-618 203-593 (625)
21 TIGR00990 3a0801s09 mitochondr 99.8 1.8E-16 3.8E-21 170.3 47.5 410 224-651 131-574 (615)
22 PRK15174 Vi polysaccharide exp 99.8 3.9E-17 8.5E-22 174.5 39.5 337 256-618 42-384 (656)
23 PRK14574 hmsH outer membrane p 99.8 2.1E-15 4.6E-20 161.4 51.3 432 149-618 41-516 (822)
24 PRK10049 pgaA outer membrane p 99.8 5E-16 1.1E-20 169.8 47.6 426 138-629 11-470 (765)
25 KOG2002 TPR-containing nuclear 99.8 1.5E-15 3.2E-20 155.2 46.4 545 73-653 167-750 (1018)
26 PRK10049 pgaA outer membrane p 99.8 1.1E-16 2.4E-21 174.9 41.6 404 224-653 19-461 (765)
27 PRK14574 hmsH outer membrane p 99.8 3.9E-14 8.4E-19 151.8 51.3 441 75-547 41-520 (822)
28 KOG4422 Uncharacterized conser 99.8 1.3E-14 2.8E-19 134.8 34.2 322 221-571 117-460 (625)
29 KOG2003 TPR repeat-containing 99.7 4.3E-14 9.2E-19 132.2 36.2 478 140-654 199-728 (840)
30 KOG0495 HAT repeat protein [RN 99.7 3.7E-12 8.1E-17 124.9 47.7 470 150-650 384-882 (913)
31 KOG2076 RNA polymerase III tra 99.7 7.4E-12 1.6E-16 127.8 47.4 369 151-536 148-553 (895)
32 KOG2076 RNA polymerase III tra 99.7 6.7E-11 1.5E-15 120.9 51.3 515 69-612 140-731 (895)
33 KOG0495 HAT repeat protein [RN 99.7 1E-10 2.2E-15 115.0 50.0 487 108-642 411-902 (913)
34 KOG1915 Cell cycle control pro 99.7 5.4E-11 1.2E-15 112.5 44.4 450 140-625 71-546 (677)
35 KOG2003 TPR repeat-containing 99.6 2E-12 4.3E-17 121.2 27.8 495 76-611 209-718 (840)
36 KOG4318 Bicoid mRNA stability 99.6 2.5E-11 5.5E-16 123.3 35.7 224 61-306 18-286 (1088)
37 KOG1915 Cell cycle control pro 99.6 8.6E-09 1.9E-13 98.0 49.2 458 81-575 86-587 (677)
38 PRK10747 putative protoheme IX 99.5 2E-11 4.4E-16 123.2 31.5 249 341-612 129-387 (398)
39 TIGR00540 hemY_coli hemY prote 99.5 2.9E-11 6.4E-16 122.7 32.7 227 375-612 160-396 (409)
40 COG2956 Predicted N-acetylgluc 99.5 7.2E-11 1.6E-15 106.5 30.7 226 235-467 49-278 (389)
41 PRK10747 putative protoheme IX 99.5 6.9E-11 1.5E-15 119.3 34.3 281 235-571 98-388 (398)
42 PF13429 TPR_15: Tetratricopep 99.5 5E-14 1.1E-18 135.8 10.8 258 335-611 13-273 (280)
43 TIGR00540 hemY_coli hemY prote 99.5 8.7E-11 1.9E-15 119.3 34.4 289 235-571 98-397 (409)
44 KOG0547 Translocase of outer m 99.5 2.9E-10 6.3E-15 108.3 34.4 217 381-614 339-565 (606)
45 KOG1155 Anaphase-promoting com 99.5 3.8E-09 8.3E-14 100.2 41.0 356 184-571 170-534 (559)
46 PF13429 TPR_15: Tetratricopep 99.5 1.9E-13 4E-18 131.8 13.0 260 147-428 13-273 (280)
47 KOG1126 DNA-binding cell divis 99.5 1.2E-11 2.6E-16 122.4 25.3 290 306-621 334-626 (638)
48 KOG1173 Anaphase-promoting com 99.5 1.5E-09 3.3E-14 105.5 38.2 487 66-596 14-532 (611)
49 KOG4318 Bicoid mRNA stability 99.5 2.7E-10 5.8E-15 116.0 34.4 506 89-648 11-594 (1088)
50 KOG0547 Translocase of outer m 99.5 1.4E-09 3E-14 103.7 35.6 390 227-648 122-566 (606)
51 COG2956 Predicted N-acetylgluc 99.5 4.3E-10 9.4E-15 101.6 30.3 226 374-613 113-345 (389)
52 KOG2047 mRNA splicing factor [ 99.5 6.6E-08 1.4E-12 95.6 47.1 538 70-642 104-717 (835)
53 KOG1173 Anaphase-promoting com 99.4 2.3E-09 5E-14 104.3 35.9 481 141-654 15-524 (611)
54 KOG1155 Anaphase-promoting com 99.4 8.3E-09 1.8E-13 98.0 37.6 343 122-501 142-494 (559)
55 KOG1126 DNA-binding cell divis 99.4 6.1E-11 1.3E-15 117.5 24.5 282 235-538 333-620 (638)
56 COG3071 HemY Uncharacterized e 99.4 1.1E-09 2.4E-14 102.2 30.8 286 343-647 97-389 (400)
57 COG3071 HemY Uncharacterized e 99.4 2.6E-09 5.7E-14 99.8 32.2 291 235-571 98-388 (400)
58 KOG1156 N-terminal acetyltrans 99.4 1.4E-07 3.1E-12 93.6 43.9 429 152-617 17-470 (700)
59 KOG4162 Predicted calmodulin-b 99.4 3.4E-08 7.3E-13 99.9 39.9 140 511-661 652-796 (799)
60 TIGR02521 type_IV_pilW type IV 99.3 9.5E-10 2.1E-14 103.4 25.4 200 403-614 31-231 (234)
61 KOG1156 N-terminal acetyltrans 99.3 8.1E-07 1.7E-11 88.4 45.2 460 79-575 18-513 (700)
62 PF13041 PPR_2: PPR repeat fam 99.3 2.9E-12 6.3E-17 86.0 5.2 50 218-268 1-50 (50)
63 PF13041 PPR_2: PPR repeat fam 99.3 5.7E-12 1.2E-16 84.6 6.5 50 507-556 1-50 (50)
64 KOG2047 mRNA splicing factor [ 99.3 2.6E-06 5.7E-11 84.7 48.4 437 143-613 103-613 (835)
65 KOG1174 Anaphase-promoting com 99.3 5.5E-07 1.2E-11 84.6 38.8 305 246-571 184-498 (564)
66 PRK12370 invasion protein regu 99.2 5E-09 1.1E-13 110.7 27.4 147 307-464 320-467 (553)
67 KOG3785 Uncharacterized conser 99.2 1.7E-07 3.6E-12 86.1 32.9 460 110-631 29-506 (557)
68 PRK12370 invasion protein regu 99.2 6.5E-09 1.4E-13 109.9 27.7 147 384-536 320-468 (553)
69 TIGR02521 type_IV_pilW type IV 99.2 7.4E-09 1.6E-13 97.3 25.2 194 373-571 36-230 (234)
70 KOG1840 Kinesin light chain [C 99.2 8.3E-09 1.8E-13 103.7 26.0 242 369-613 200-477 (508)
71 KOG1129 TPR repeat-containing 99.2 1.1E-09 2.4E-14 99.0 17.6 232 407-651 227-461 (478)
72 PF12569 NARP1: NMDA receptor- 99.2 6.6E-08 1.4E-12 98.6 32.6 291 336-647 10-333 (517)
73 KOG1840 Kinesin light chain [C 99.2 1.4E-08 3.1E-13 102.1 26.7 245 403-647 199-478 (508)
74 PF12569 NARP1: NMDA receptor- 99.2 8.3E-07 1.8E-11 90.7 39.4 297 148-466 10-333 (517)
75 KOG3785 Uncharacterized conser 99.2 3.3E-07 7.2E-12 84.2 31.3 445 75-571 29-488 (557)
76 KOG1174 Anaphase-promoting com 99.2 1.2E-06 2.6E-11 82.4 35.2 296 150-468 204-501 (564)
77 KOG1129 TPR repeat-containing 99.2 1.3E-08 2.8E-13 92.2 21.7 230 373-618 228-461 (478)
78 KOG2376 Signal recognition par 99.1 3.6E-06 7.7E-11 83.1 38.2 452 147-644 17-516 (652)
79 KOG2376 Signal recognition par 99.0 2.7E-05 5.9E-10 77.0 40.5 454 73-570 17-517 (652)
80 KOG3617 WD40 and TPR repeat-co 99.0 9.1E-06 2E-10 83.1 37.9 234 78-358 738-995 (1416)
81 COG3063 PilF Tfp pilus assembl 99.0 4E-07 8.6E-12 79.1 23.7 196 406-614 38-235 (250)
82 KOG4162 Predicted calmodulin-b 99.0 1.1E-05 2.3E-10 82.4 37.0 460 78-572 294-782 (799)
83 KOG0548 Molecular co-chaperone 99.0 2.7E-06 5.8E-11 83.2 30.5 389 230-653 12-460 (539)
84 PRK11189 lipoprotein NlpI; Pro 99.0 3.1E-07 6.8E-12 88.7 24.3 231 382-625 40-274 (296)
85 PRK11189 lipoprotein NlpI; Pro 99.0 1.8E-07 3.9E-12 90.4 22.0 219 416-652 39-269 (296)
86 cd05804 StaR_like StaR_like; a 98.9 4.6E-06 9.9E-11 83.9 32.4 150 235-396 57-214 (355)
87 KOG3616 Selective LIM binding 98.9 1.8E-05 3.9E-10 79.9 33.8 161 415-610 744-906 (1636)
88 cd05804 StaR_like StaR_like; a 98.9 8.4E-06 1.8E-10 82.0 32.8 307 332-648 8-336 (355)
89 KOG1127 TPR repeat-containing 98.9 4E-05 8.6E-10 80.4 36.6 137 469-615 963-1104(1238)
90 KOG0985 Vesicle coat protein c 98.9 4.3E-05 9.2E-10 80.1 36.6 312 225-612 989-1305(1666)
91 KOG3617 WD40 and TPR repeat-co 98.9 2.3E-05 4.9E-10 80.3 34.0 251 141-430 725-994 (1416)
92 KOG3616 Selective LIM binding 98.9 4.3E-05 9.4E-10 77.3 34.9 192 339-570 715-908 (1636)
93 COG3063 PilF Tfp pilus assembl 98.9 3.8E-06 8.3E-11 73.1 24.1 193 373-571 40-234 (250)
94 PRK04841 transcriptional regul 98.9 1.7E-05 3.8E-10 90.6 37.4 276 338-616 460-761 (903)
95 PF04733 Coatomer_E: Coatomer 98.8 1.3E-07 2.8E-12 89.9 15.6 129 511-650 133-267 (290)
96 KOG1914 mRNA cleavage and poly 98.8 0.00018 3.9E-09 70.6 41.1 426 138-614 16-500 (656)
97 PF04733 Coatomer_E: Coatomer 98.8 5.4E-07 1.2E-11 85.7 19.1 252 75-358 8-264 (290)
98 KOG0985 Vesicle coat protein c 98.8 0.0004 8.6E-09 73.2 42.5 383 69-530 985-1375(1666)
99 KOG1125 TPR repeat-containing 98.8 7.6E-07 1.7E-11 87.6 19.5 250 377-642 294-565 (579)
100 KOG4340 Uncharacterized conser 98.8 9.6E-06 2.1E-10 73.1 24.2 353 144-536 12-373 (459)
101 KOG0624 dsRNA-activated protei 98.7 0.00019 4.2E-09 66.3 31.2 296 296-620 43-375 (504)
102 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.9E-13 60.0 3.7 32 433-464 2-33 (34)
103 PF12854 PPR_1: PPR repeat 98.7 3.3E-08 7.1E-13 59.2 3.9 32 539-570 2-33 (34)
104 PRK04841 transcriptional regul 98.7 8.9E-05 1.9E-09 84.8 34.9 314 147-468 414-761 (903)
105 KOG0548 Molecular co-chaperone 98.7 0.00021 4.5E-09 70.3 31.5 106 75-188 9-114 (539)
106 KOG4340 Uncharacterized conser 98.6 1.1E-05 2.4E-10 72.7 20.6 121 481-612 249-372 (459)
107 KOG1127 TPR repeat-containing 98.6 0.00033 7.2E-09 73.8 33.7 461 84-572 474-995 (1238)
108 KOG2053 Mitochondrial inherita 98.6 0.0015 3.1E-08 68.6 39.1 421 190-648 21-536 (932)
109 KOG1070 rRNA processing protei 98.6 2.1E-05 4.6E-10 85.2 25.1 232 400-647 1455-1699(1710)
110 KOG1125 TPR repeat-containing 98.6 1.6E-05 3.4E-10 78.7 22.1 224 265-499 294-524 (579)
111 KOG1128 Uncharacterized conser 98.6 5.1E-06 1.1E-10 84.1 18.2 208 375-612 405-613 (777)
112 KOG1070 rRNA processing protei 98.5 6.9E-05 1.5E-09 81.5 25.9 227 366-604 1455-1689(1710)
113 KOG3060 Uncharacterized conser 98.5 3.2E-05 6.9E-10 68.4 19.4 129 522-660 99-231 (289)
114 TIGR03302 OM_YfiO outer membra 98.5 1.9E-05 4.2E-10 74.0 20.0 188 400-615 30-232 (235)
115 TIGR03302 OM_YfiO outer membra 98.5 2.9E-05 6.2E-10 72.8 20.6 182 367-571 32-230 (235)
116 KOG1128 Uncharacterized conser 98.5 2E-05 4.4E-10 80.0 19.6 216 331-572 399-615 (777)
117 PLN02789 farnesyltranstransfer 98.4 0.00036 7.7E-09 67.5 26.0 209 338-556 45-267 (320)
118 KOG3081 Vesicle coat complex C 98.4 0.00012 2.7E-09 65.3 20.3 122 519-651 147-274 (299)
119 PRK14720 transcript cleavage f 98.4 0.00015 3.3E-09 78.1 25.3 235 257-555 32-268 (906)
120 PLN02789 farnesyltranstransfer 98.4 0.00056 1.2E-08 66.2 26.6 205 303-521 49-267 (320)
121 KOG1914 mRNA cleavage and poly 98.3 0.0041 8.8E-08 61.6 38.9 184 454-647 309-500 (656)
122 PRK15179 Vi polysaccharide bio 98.3 0.00036 7.8E-09 74.6 25.9 146 140-298 84-229 (694)
123 PRK14720 transcript cleavage f 98.3 0.00048 1E-08 74.4 26.1 240 139-449 28-268 (906)
124 PRK15359 type III secretion sy 98.3 6.7E-05 1.5E-09 63.6 15.7 109 494-618 14-124 (144)
125 KOG0624 dsRNA-activated protei 98.2 0.0042 9.1E-08 57.8 28.4 204 229-468 164-371 (504)
126 COG5010 TadD Flp pilus assembl 98.2 0.00029 6.2E-09 63.1 19.2 156 443-611 71-227 (257)
127 PRK15179 Vi polysaccharide bio 98.2 0.00054 1.2E-08 73.3 24.9 181 365-557 83-268 (694)
128 PRK10370 formate-dependent nit 98.2 0.00033 7.1E-09 62.9 19.4 120 486-618 52-176 (198)
129 PRK10370 formate-dependent nit 98.2 0.00031 6.8E-09 63.0 19.3 119 304-432 52-173 (198)
130 PRK15359 type III secretion sy 98.2 2.5E-05 5.4E-10 66.2 11.5 112 529-653 13-126 (144)
131 KOG3081 Vesicle coat complex C 98.1 0.0016 3.5E-08 58.4 21.8 250 75-358 15-270 (299)
132 TIGR00756 PPR pentatricopeptid 98.1 4.9E-06 1.1E-10 50.8 4.6 34 511-544 2-35 (35)
133 COG5010 TadD Flp pilus assembl 98.1 0.0004 8.7E-09 62.3 18.1 160 477-648 70-231 (257)
134 PF09976 TPR_21: Tetratricopep 98.1 0.0002 4.4E-09 60.9 14.8 118 486-612 24-144 (145)
135 TIGR00756 PPR pentatricopeptid 98.0 9E-06 1.9E-10 49.6 4.5 32 406-437 3-34 (35)
136 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 49.0 4.3 33 510-542 2-34 (34)
137 COG4783 Putative Zn-dependent 98.0 0.0088 1.9E-07 58.8 26.1 107 381-491 319-426 (484)
138 PF13812 PPR_3: Pentatricopept 98.0 9.6E-06 2.1E-10 49.1 3.7 33 221-254 2-34 (34)
139 PF09976 TPR_21: Tetratricopep 98.0 0.00024 5.1E-09 60.5 13.1 126 511-646 14-145 (145)
140 PF10037 MRP-S27: Mitochondria 97.9 0.00014 3E-09 72.0 12.5 120 436-556 64-185 (429)
141 TIGR02552 LcrH_SycD type III s 97.9 0.00053 1.2E-08 57.7 14.6 100 510-618 18-117 (135)
142 TIGR02552 LcrH_SycD type III s 97.9 0.00035 7.6E-09 58.8 13.4 93 476-571 20-112 (135)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00033 7.2E-09 69.1 14.8 122 442-571 173-295 (395)
144 COG4783 Putative Zn-dependent 97.9 0.0068 1.5E-07 59.5 22.7 200 384-615 253-454 (484)
145 PF10037 MRP-S27: Mitochondria 97.9 0.0002 4.4E-09 70.9 12.4 124 363-486 61-186 (429)
146 KOG3060 Uncharacterized conser 97.8 0.0095 2.1E-07 53.3 20.7 191 343-538 25-220 (289)
147 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00069 1.5E-08 66.9 15.1 125 405-537 171-296 (395)
148 PF01535 PPR: PPR repeat; Int 97.8 3.9E-05 8.4E-10 45.2 3.6 30 511-540 2-31 (31)
149 PF01535 PPR: PPR repeat; Int 97.7 4.2E-05 9.2E-10 45.0 3.6 29 440-468 2-30 (31)
150 PF08579 RPM2: Mitochondrial r 97.7 0.00038 8.1E-09 53.6 9.4 80 513-599 29-117 (120)
151 PF08579 RPM2: Mitochondrial r 97.7 0.0004 8.6E-09 53.5 9.5 77 374-450 31-116 (120)
152 KOG2053 Mitochondrial inherita 97.7 0.11 2.5E-06 55.1 46.0 228 75-321 16-256 (932)
153 PF14938 SNAP: Soluble NSF att 97.7 0.0033 7.2E-08 60.4 17.6 206 411-651 43-269 (282)
154 PF14938 SNAP: Soluble NSF att 97.7 0.016 3.4E-07 55.7 21.9 98 510-612 156-263 (282)
155 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0016 3.6E-08 53.2 12.1 101 511-618 4-108 (119)
156 PF12895 Apc3: Anaphase-promot 97.5 0.00027 5.9E-09 53.5 6.5 80 522-611 2-83 (84)
157 PF05843 Suf: Suppressor of fo 97.5 0.0017 3.6E-08 62.1 13.2 129 476-614 4-135 (280)
158 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0011 2.3E-08 54.3 10.3 107 545-656 3-113 (119)
159 cd00189 TPR Tetratricopeptide 97.5 0.002 4.3E-08 49.9 11.3 93 512-614 3-96 (100)
160 PF06239 ECSIT: Evolutionarily 97.5 0.0015 3.3E-08 57.2 10.6 116 437-575 46-166 (228)
161 PF12895 Apc3: Anaphase-promot 97.5 0.00027 5.9E-09 53.5 5.5 81 486-569 2-83 (84)
162 CHL00033 ycf3 photosystem I as 97.5 0.0038 8.3E-08 54.7 13.6 110 493-611 19-138 (168)
163 PLN03088 SGT1, suppressor of 97.4 0.0027 5.8E-08 63.1 13.6 101 518-629 11-113 (356)
164 PF05843 Suf: Suppressor of fo 97.4 0.0061 1.3E-07 58.3 14.6 146 405-554 3-150 (280)
165 PF06239 ECSIT: Evolutionarily 97.3 0.0025 5.4E-08 55.8 10.5 72 417-488 66-153 (228)
166 PRK15363 pathogenicity island 97.3 0.012 2.7E-07 49.2 14.1 90 513-613 39-130 (157)
167 PRK10153 DNA-binding transcrip 97.3 0.01 2.3E-07 61.6 16.8 72 508-590 419-490 (517)
168 PRK10866 outer membrane biogen 97.3 0.12 2.5E-06 48.2 22.1 178 409-613 38-239 (243)
169 cd00189 TPR Tetratricopeptide 97.3 0.0042 9.2E-08 48.0 10.9 57 406-463 37-93 (100)
170 PF04840 Vps16_C: Vps16, C-ter 97.3 0.21 4.5E-06 48.5 25.9 126 404-556 178-303 (319)
171 PRK02603 photosystem I assembl 97.3 0.01 2.2E-07 52.2 13.9 89 509-606 35-126 (172)
172 KOG0553 TPR repeat-containing 97.2 0.0052 1.1E-07 56.5 11.8 98 482-592 90-188 (304)
173 PF04840 Vps16_C: Vps16, C-ter 97.2 0.17 3.7E-06 49.1 22.8 106 294-426 180-285 (319)
174 PRK15363 pathogenicity island 97.2 0.024 5.2E-07 47.5 14.5 97 406-504 38-134 (157)
175 PRK10153 DNA-binding transcrip 97.2 0.032 6.9E-07 58.1 18.4 88 525-621 400-488 (517)
176 COG4700 Uncharacterized protei 97.2 0.12 2.5E-06 44.1 17.9 135 435-571 86-220 (251)
177 KOG1538 Uncharacterized conser 97.1 0.037 8.1E-07 56.1 17.4 120 148-313 604-725 (1081)
178 KOG0553 TPR repeat-containing 97.1 0.0011 2.5E-08 60.7 6.5 93 552-653 89-183 (304)
179 PF13432 TPR_16: Tetratricopep 97.1 0.0011 2.4E-08 47.1 5.3 62 592-653 3-65 (65)
180 CHL00033 ycf3 photosystem I as 97.1 0.0082 1.8E-07 52.6 11.7 94 257-355 36-138 (168)
181 KOG1130 Predicted G-alpha GTPa 97.1 0.0097 2.1E-07 56.9 12.3 137 475-613 197-342 (639)
182 KOG1538 Uncharacterized conser 97.1 0.22 4.8E-06 50.9 22.2 23 593-615 824-846 (1081)
183 COG4700 Uncharacterized protei 97.1 0.056 1.2E-06 46.0 15.3 99 470-571 86-187 (251)
184 PF07079 DUF1347: Protein of u 97.1 0.35 7.6E-06 47.5 39.4 352 221-613 129-522 (549)
185 PF13414 TPR_11: TPR repeat; P 97.1 0.0018 3.8E-08 46.8 6.0 66 585-650 2-69 (69)
186 PLN03088 SGT1, suppressor of 97.1 0.012 2.6E-07 58.5 13.6 89 411-501 10-98 (356)
187 KOG0550 Molecular chaperone (D 97.0 0.11 2.4E-06 50.1 18.9 165 446-625 177-360 (486)
188 PRK10866 outer membrane biogen 97.0 0.11 2.4E-06 48.4 19.0 61 336-397 38-98 (243)
189 PRK02603 photosystem I assembl 97.0 0.027 5.9E-07 49.5 14.4 87 404-491 36-124 (172)
190 KOG0550 Molecular chaperone (D 97.0 0.26 5.5E-06 47.8 21.0 166 257-432 169-350 (486)
191 COG3898 Uncharacterized membra 97.0 0.37 8.1E-06 46.3 26.4 50 415-466 166-216 (531)
192 PF03704 BTAD: Bacterial trans 96.9 0.038 8.3E-07 47.0 14.1 76 511-590 64-140 (146)
193 KOG1920 IkappaB kinase complex 96.9 1.1 2.3E-05 49.8 27.4 158 417-613 894-1053(1265)
194 PF12688 TPR_5: Tetratrico pep 96.9 0.031 6.7E-07 45.1 11.9 89 448-536 11-102 (120)
195 KOG2041 WD40 repeat protein [G 96.9 0.72 1.6E-05 47.8 24.0 207 217-462 689-902 (1189)
196 KOG2280 Vacuolar assembly/sort 96.9 0.78 1.7E-05 48.1 26.4 342 137-533 427-794 (829)
197 PF13414 TPR_11: TPR repeat; P 96.8 0.0049 1.1E-07 44.4 6.6 65 543-616 2-68 (69)
198 PF13281 DUF4071: Domain of un 96.8 0.11 2.3E-06 50.9 17.2 165 478-651 146-337 (374)
199 PF13432 TPR_16: Tetratricopep 96.8 0.0076 1.7E-07 42.8 7.3 59 550-617 3-62 (65)
200 PRK10803 tol-pal system protei 96.8 0.01 2.3E-07 55.6 9.8 105 545-654 144-252 (263)
201 PF14559 TPR_19: Tetratricopep 96.7 0.0053 1.1E-07 44.1 6.1 51 381-432 4-54 (68)
202 PF03704 BTAD: Bacterial trans 96.7 0.038 8.2E-07 47.1 12.2 118 340-475 16-138 (146)
203 PF13525 YfiO: Outer membrane 96.7 0.37 8E-06 43.6 19.2 85 513-606 114-198 (203)
204 PF12921 ATP13: Mitochondrial 96.7 0.031 6.7E-07 45.6 10.8 109 543-651 1-120 (126)
205 KOG2796 Uncharacterized conser 96.7 0.48 1E-05 43.0 21.5 141 405-549 179-324 (366)
206 PF12688 TPR_5: Tetratrico pep 96.6 0.092 2E-06 42.4 13.1 58 375-432 8-67 (120)
207 PRK10803 tol-pal system protei 96.6 0.036 7.8E-07 52.1 12.3 102 510-618 144-249 (263)
208 KOG1130 Predicted G-alpha GTPa 96.6 0.058 1.3E-06 51.8 13.3 64 511-574 277-345 (639)
209 PF13424 TPR_12: Tetratricopep 96.5 0.014 3.1E-07 43.3 7.5 68 545-614 6-74 (78)
210 COG4235 Cytochrome c biogenesi 96.5 0.16 3.5E-06 47.2 15.4 108 315-432 146-256 (287)
211 PF14559 TPR_19: Tetratricopep 96.5 0.0064 1.4E-07 43.7 5.2 65 153-228 2-66 (68)
212 PF13281 DUF4071: Domain of un 96.5 0.92 2E-05 44.5 21.1 165 372-538 145-334 (374)
213 PF13525 YfiO: Outer membrane 96.4 0.31 6.7E-06 44.1 16.9 60 301-362 15-74 (203)
214 PF12921 ATP13: Mitochondrial 96.3 0.038 8.2E-07 45.1 9.0 98 437-555 1-99 (126)
215 COG5107 RNA14 Pre-mRNA 3'-end 96.2 1.4 3E-05 43.4 32.6 151 474-633 398-549 (660)
216 PF10300 DUF3808: Protein of u 96.2 0.18 4E-06 52.1 15.5 107 523-635 247-356 (468)
217 KOG2041 WD40 repeat protein [G 96.1 2.1 4.6E-05 44.6 30.2 26 83-114 678-703 (1189)
218 KOG1585 Protein required for f 96.1 0.83 1.8E-05 41.1 16.7 214 331-609 32-250 (308)
219 COG4235 Cytochrome c biogenesi 96.0 0.28 6E-06 45.7 14.3 98 470-571 153-254 (287)
220 COG3898 Uncharacterized membra 96.0 1.6 3.4E-05 42.3 30.2 250 342-616 132-393 (531)
221 KOG2114 Vacuolar assembly/sort 96.0 2.9 6.4E-05 44.7 28.5 185 140-356 332-516 (933)
222 COG4105 ComL DNA uptake lipopr 95.9 1.4 2.9E-05 40.4 20.7 64 549-617 172-235 (254)
223 PF13371 TPR_9: Tetratricopept 95.9 0.042 9.1E-07 40.0 7.0 58 552-618 3-61 (73)
224 PF08631 SPO22: Meiosis protei 95.8 1.5 3.3E-05 42.0 19.2 97 370-469 86-188 (278)
225 PF07079 DUF1347: Protein of u 95.8 2.2 4.9E-05 42.2 37.9 443 152-641 16-517 (549)
226 PF13371 TPR_9: Tetratricopept 95.7 0.046 1E-06 39.8 6.6 54 412-466 4-57 (73)
227 PF13424 TPR_12: Tetratricopep 95.7 0.034 7.4E-07 41.2 5.9 63 510-572 6-74 (78)
228 KOG2796 Uncharacterized conser 95.7 1.6 3.5E-05 39.7 20.1 142 475-625 179-325 (366)
229 COG0457 NrfG FOG: TPR repeat [ 95.6 1.9 4E-05 39.8 26.8 223 382-617 37-267 (291)
230 PF09205 DUF1955: Domain of un 95.6 0.73 1.6E-05 37.0 12.7 66 510-583 87-152 (161)
231 COG1729 Uncharacterized protei 95.6 0.19 4.1E-06 46.2 11.1 61 405-466 144-206 (262)
232 PF10300 DUF3808: Protein of u 95.5 0.39 8.5E-06 49.7 14.9 95 144-247 190-293 (468)
233 KOG1586 Protein required for f 95.5 1.1 2.3E-05 40.1 14.9 17 555-571 165-181 (288)
234 COG5107 RNA14 Pre-mRNA 3'-end 95.4 3.2 7E-05 41.0 34.3 147 404-556 398-547 (660)
235 PRK15331 chaperone protein Sic 95.4 0.68 1.5E-05 39.2 12.8 88 377-466 46-133 (165)
236 KOG1464 COP9 signalosome, subu 95.2 2.4 5.2E-05 38.8 22.0 355 285-658 20-425 (440)
237 KOG3941 Intermediate in Toll s 95.2 0.3 6.5E-06 44.7 10.9 88 507-601 65-173 (406)
238 KOG3941 Intermediate in Toll s 95.2 0.16 3.5E-06 46.4 9.2 103 437-559 66-173 (406)
239 smart00299 CLH Clathrin heavy 95.2 0.77 1.7E-05 38.6 13.2 126 476-630 10-136 (140)
240 PF04053 Coatomer_WDAD: Coatom 95.1 1.2 2.6E-05 45.5 16.4 152 235-428 275-427 (443)
241 PRK11906 transcriptional regul 95.1 1.4 3.1E-05 44.0 16.3 55 515-571 344-399 (458)
242 PRK15331 chaperone protein Sic 95.0 1.1 2.5E-05 37.9 13.1 89 411-501 45-133 (165)
243 PF04053 Coatomer_WDAD: Coatom 94.9 0.71 1.5E-05 47.1 14.0 98 378-496 328-425 (443)
244 KOG2610 Uncharacterized conser 94.8 3.7 8.1E-05 38.9 24.7 152 304-465 116-274 (491)
245 PRK11906 transcriptional regul 94.8 0.51 1.1E-05 47.1 12.3 121 524-653 273-406 (458)
246 KOG4555 TPR repeat-containing 94.8 0.62 1.3E-05 37.3 10.2 94 300-398 52-145 (175)
247 PF13170 DUF4003: Protein of u 94.7 4.2 9.1E-05 39.1 19.6 96 347-444 120-223 (297)
248 smart00299 CLH Clathrin heavy 94.7 2.2 4.9E-05 35.8 16.6 43 373-416 12-54 (140)
249 COG1729 Uncharacterized protei 94.6 0.51 1.1E-05 43.5 10.9 96 511-615 144-244 (262)
250 PF08631 SPO22: Meiosis protei 94.5 4.6 0.0001 38.7 25.6 167 439-613 85-273 (278)
251 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 0.6 1.3E-05 46.5 11.9 70 61-130 68-139 (453)
252 COG2976 Uncharacterized protei 94.4 1.4 3.1E-05 38.3 12.5 136 511-657 56-197 (207)
253 KOG4555 TPR repeat-containing 94.4 1.5 3.2E-05 35.2 11.4 92 518-617 52-146 (175)
254 KOG1585 Protein required for f 94.3 3.9 8.5E-05 37.0 15.4 211 144-390 33-249 (308)
255 COG1747 Uncharacterized N-term 94.2 7 0.00015 39.5 20.4 183 365-555 63-250 (711)
256 KOG0543 FKBP-type peptidyl-pro 94.1 0.32 7E-06 47.2 9.0 100 552-653 216-325 (397)
257 COG4105 ComL DNA uptake lipopr 94.0 4.8 0.0001 36.9 19.1 167 447-645 43-230 (254)
258 KOG1920 IkappaB kinase complex 94.0 9.7 0.00021 42.8 20.4 135 294-463 911-1051(1265)
259 COG3118 Thioredoxin domain-con 93.9 2.8 6.1E-05 39.2 14.2 21 374-394 174-194 (304)
260 PF10602 RPN7: 26S proteasome 93.9 0.71 1.5E-05 40.5 10.2 97 510-612 37-139 (177)
261 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 0.8 1.7E-05 45.7 11.4 59 509-571 75-139 (453)
262 PF13170 DUF4003: Protein of u 93.6 7.1 0.00015 37.6 23.2 156 419-577 78-250 (297)
263 KOG0543 FKBP-type peptidyl-pro 93.6 1.3 2.9E-05 43.1 12.2 138 445-614 215-354 (397)
264 COG4649 Uncharacterized protei 93.6 3.1 6.8E-05 35.4 12.6 138 140-286 57-197 (221)
265 PF13512 TPR_18: Tetratricopep 93.5 2.5 5.4E-05 35.0 11.9 58 556-618 22-79 (142)
266 KOG1941 Acetylcholine receptor 93.5 3.9 8.4E-05 39.3 14.4 169 476-647 86-274 (518)
267 COG3629 DnrI DNA-binding trans 93.4 0.94 2E-05 42.5 10.5 83 510-595 154-236 (280)
268 PF07035 Mic1: Colon cancer-as 93.4 4.6 0.0001 34.7 15.1 135 242-397 15-149 (167)
269 PF09205 DUF1955: Domain of un 93.3 3.6 7.9E-05 33.2 15.1 134 304-469 15-151 (161)
270 PF04184 ST7: ST7 protein; In 93.3 10 0.00022 38.4 19.0 57 515-571 265-322 (539)
271 KOG2610 Uncharacterized conser 93.1 2.6 5.7E-05 39.9 12.7 154 235-394 117-273 (491)
272 PF09613 HrpB1_HrpK: Bacterial 93.1 1.3 2.8E-05 37.5 9.8 95 546-649 9-107 (160)
273 KOG4570 Uncharacterized conser 93.0 0.66 1.4E-05 43.3 8.7 103 433-538 59-164 (418)
274 PF04184 ST7: ST7 protein; In 92.9 9 0.0002 38.8 16.7 60 478-537 264-323 (539)
275 PF13512 TPR_18: Tetratricopep 92.8 4.5 9.8E-05 33.5 12.4 72 378-449 20-93 (142)
276 KOG4648 Uncharacterized conser 92.7 0.22 4.8E-06 46.8 5.2 94 551-653 104-199 (536)
277 KOG2280 Vacuolar assembly/sort 92.6 17 0.00036 38.9 38.3 85 511-612 686-770 (829)
278 COG0457 NrfG FOG: TPR repeat [ 92.5 8.4 0.00018 35.2 28.3 199 369-571 60-263 (291)
279 KOG1550 Extracellular protein 92.3 18 0.0004 38.6 22.8 228 405-652 290-542 (552)
280 PF13428 TPR_14: Tetratricopep 92.2 0.27 5.8E-06 31.4 3.8 36 588-623 3-39 (44)
281 COG2976 Uncharacterized protei 92.1 7.4 0.00016 34.1 13.2 92 516-619 96-192 (207)
282 PF09613 HrpB1_HrpK: Bacterial 91.8 7 0.00015 33.2 12.5 93 521-624 22-115 (160)
283 PF07035 Mic1: Colon cancer-as 91.3 8.8 0.00019 33.0 16.8 134 128-285 15-149 (167)
284 TIGR02561 HrpB1_HrpK type III 91.3 2.4 5.2E-05 35.2 9.1 82 556-648 22-106 (153)
285 KOG4234 TPR repeat-containing 91.0 1.4 3.1E-05 38.3 7.9 91 518-618 104-200 (271)
286 KOG1258 mRNA processing protei 90.7 23 0.0005 36.8 40.0 417 141-600 44-489 (577)
287 COG3629 DnrI DNA-binding trans 90.3 3 6.4E-05 39.3 10.1 74 371-445 156-234 (280)
288 COG3118 Thioredoxin domain-con 90.2 17 0.00036 34.3 17.2 48 265-313 143-190 (304)
289 KOG4570 Uncharacterized conser 90.1 5.2 0.00011 37.7 11.1 101 469-571 60-162 (418)
290 PF13176 TPR_7: Tetratricopept 89.7 0.78 1.7E-05 27.6 4.0 23 512-534 2-24 (36)
291 KOG2114 Vacuolar assembly/sort 89.6 35 0.00075 37.1 28.6 52 592-645 711-762 (933)
292 PF10345 Cohesin_load: Cohesin 89.1 37 0.00081 36.9 35.7 424 142-571 59-604 (608)
293 PF13428 TPR_14: Tetratricopep 89.1 0.35 7.6E-06 30.8 2.2 35 619-653 1-35 (44)
294 PF10602 RPN7: 26S proteasome 89.1 9.4 0.0002 33.5 11.9 80 532-618 23-105 (177)
295 PF04097 Nic96: Nup93/Nic96; 89.1 37 0.00081 36.8 24.0 63 221-286 113-182 (613)
296 COG4649 Uncharacterized protei 89.0 14 0.0003 31.7 14.5 123 448-571 68-194 (221)
297 PF13176 TPR_7: Tetratricopept 88.7 0.98 2.1E-05 27.2 3.9 26 546-571 1-26 (36)
298 KOG1941 Acetylcholine receptor 88.4 26 0.00055 34.0 17.7 133 477-612 126-272 (518)
299 KOG2066 Vacuolar assembly/sort 88.2 41 0.0009 36.3 24.2 25 406-430 508-532 (846)
300 COG3947 Response regulator con 88.0 24 0.00051 33.2 17.1 77 511-590 281-357 (361)
301 COG2909 MalT ATP-dependent tra 87.9 47 0.001 36.5 29.2 230 266-498 425-684 (894)
302 PF00637 Clathrin: Region in C 86.8 0.019 4.2E-07 48.7 -6.2 83 374-463 13-95 (143)
303 PRK11619 lytic murein transgly 86.4 54 0.0012 35.7 29.7 335 219-613 33-373 (644)
304 KOG4279 Serine/threonine prote 86.0 12 0.00025 39.9 11.8 78 387-467 182-272 (1226)
305 PF00515 TPR_1: Tetratricopept 85.5 1.9 4.2E-05 25.3 4.0 29 588-616 3-31 (34)
306 COG3947 Response regulator con 85.2 34 0.00073 32.2 14.9 54 410-464 286-339 (361)
307 KOG1258 mRNA processing protei 84.6 55 0.0012 34.2 34.5 95 147-249 84-179 (577)
308 PF02259 FAT: FAT domain; Int 84.1 47 0.001 33.0 21.2 65 508-572 145-212 (352)
309 PF07719 TPR_2: Tetratricopept 84.0 2.4 5.3E-05 24.7 4.0 29 588-616 3-31 (34)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 83.8 7.6 0.00016 29.5 6.9 63 236-299 22-84 (103)
311 PF00515 TPR_1: Tetratricopept 83.8 4.1 8.8E-05 23.8 4.8 29 331-359 2-30 (34)
312 cd00923 Cyt_c_Oxidase_Va Cytoc 83.3 11 0.00023 28.7 7.6 61 559-626 22-83 (103)
313 KOG1550 Extracellular protein 83.3 69 0.0015 34.3 19.9 179 384-571 228-424 (552)
314 PF11207 DUF2989: Protein of u 83.1 10 0.00023 33.5 8.8 74 274-349 124-197 (203)
315 TIGR02561 HrpB1_HrpK type III 83.0 27 0.00058 29.3 11.0 51 486-538 23-73 (153)
316 PF13929 mRNA_stabil: mRNA sta 82.7 44 0.00095 31.6 19.8 142 453-596 143-288 (292)
317 PF10345 Cohesin_load: Cohesin 82.7 78 0.0017 34.5 34.8 202 217-429 27-251 (608)
318 PF08311 Mad3_BUB1_I: Mad3/BUB 82.3 17 0.00036 29.8 9.4 58 144-203 67-124 (126)
319 PF07719 TPR_2: Tetratricopept 82.0 5.4 0.00012 23.2 4.9 28 332-359 3-30 (34)
320 PRK15180 Vi polysaccharide bio 81.6 13 0.00028 37.3 9.6 128 516-652 296-424 (831)
321 PF07575 Nucleopor_Nup85: Nup8 80.9 86 0.0019 33.8 18.2 26 68-94 149-174 (566)
322 PF02284 COX5A: Cytochrome c o 80.9 11 0.00025 28.9 7.0 46 387-432 29-74 (108)
323 PF13762 MNE1: Mitochondrial s 80.7 21 0.00046 29.8 9.3 81 333-413 42-125 (145)
324 PF13374 TPR_10: Tetratricopep 80.7 3.8 8.2E-05 25.3 4.1 25 512-536 5-29 (42)
325 KOG0991 Replication factor C, 80.3 46 0.001 30.3 13.6 142 480-631 137-284 (333)
326 PF11207 DUF2989: Protein of u 80.2 17 0.00038 32.2 9.1 45 343-387 153-197 (203)
327 COG1747 Uncharacterized N-term 80.1 75 0.0016 32.6 20.8 163 400-571 63-232 (711)
328 PF13431 TPR_17: Tetratricopep 79.9 2.9 6.2E-05 24.8 3.1 22 329-350 12-33 (34)
329 PF13431 TPR_17: Tetratricopep 79.9 2.9 6.4E-05 24.7 3.1 22 401-422 11-32 (34)
330 KOG2066 Vacuolar assembly/sort 79.1 1E+02 0.0022 33.5 29.7 105 149-268 363-467 (846)
331 COG2909 MalT ATP-dependent tra 78.9 1.1E+02 0.0024 33.8 32.6 228 379-612 426-685 (894)
332 PF13374 TPR_10: Tetratricopep 78.0 5.1 0.00011 24.7 4.1 28 331-358 3-30 (42)
333 PF00637 Clathrin: Region in C 77.6 0.87 1.9E-05 38.4 0.5 85 409-500 13-97 (143)
334 PF06552 TOM20_plant: Plant sp 77.3 15 0.00032 31.9 7.6 83 525-617 51-138 (186)
335 PF08424 NRDE-2: NRDE-2, neces 77.3 77 0.0017 31.1 16.7 127 490-620 48-189 (321)
336 KOG2297 Predicted translation 77.2 68 0.0015 30.5 18.2 17 475-491 323-339 (412)
337 COG4455 ImpE Protein of avirul 77.0 15 0.00033 32.8 7.7 58 296-358 6-63 (273)
338 PRK09687 putative lyase; Provi 76.9 71 0.0015 30.6 26.3 229 367-626 36-274 (280)
339 KOG0276 Vesicle coat complex C 76.7 47 0.001 34.7 12.0 80 219-314 665-744 (794)
340 PF06552 TOM20_plant: Plant sp 76.6 14 0.0003 32.1 7.2 102 525-630 7-124 (186)
341 COG4455 ImpE Protein of avirul 75.1 20 0.00044 32.1 7.9 79 144-229 3-81 (273)
342 COG4785 NlpI Lipoprotein NlpI, 74.8 64 0.0014 29.0 15.5 185 417-616 79-267 (297)
343 KOG0276 Vesicle coat complex C 74.5 38 0.00082 35.3 10.8 81 329-427 665-745 (794)
344 PF13181 TPR_8: Tetratricopept 74.4 8 0.00017 22.5 4.1 28 588-615 3-30 (34)
345 PF13929 mRNA_stabil: mRNA sta 74.2 81 0.0018 29.9 18.2 64 289-355 200-263 (292)
346 PF02259 FAT: FAT domain; Int 73.4 1E+02 0.0022 30.6 22.4 203 75-284 5-212 (352)
347 KOG0991 Replication factor C, 72.9 76 0.0016 29.0 12.8 70 484-555 203-283 (333)
348 PF10579 Rapsyn_N: Rapsyn N-te 72.6 13 0.00028 27.1 5.2 47 521-567 18-66 (80)
349 PF13181 TPR_8: Tetratricopept 72.5 11 0.00023 21.9 4.3 28 332-359 3-30 (34)
350 PF02284 COX5A: Cytochrome c o 72.4 43 0.00093 25.9 9.9 45 562-613 28-72 (108)
351 KOG4234 TPR repeat-containing 72.3 35 0.00075 30.2 8.6 92 340-432 105-197 (271)
352 KOG3824 Huntingtin interacting 72.2 2.7 5.8E-05 39.2 2.2 57 596-652 126-183 (472)
353 KOG4642 Chaperone-dependent E3 72.1 80 0.0017 28.9 11.2 118 486-611 23-142 (284)
354 KOG2297 Predicted translation 71.6 95 0.0021 29.5 19.5 123 252-389 219-342 (412)
355 PF13174 TPR_6: Tetratricopept 71.2 7.3 0.00016 22.3 3.3 22 410-431 7-28 (33)
356 PF13174 TPR_6: Tetratricopept 71.1 6.8 0.00015 22.5 3.2 23 515-537 6-28 (33)
357 PF04190 DUF410: Protein of un 70.8 96 0.0021 29.3 17.8 164 80-285 2-170 (260)
358 KOG2063 Vacuolar assembly/sort 70.7 1.9E+02 0.0041 32.6 18.1 40 481-521 599-638 (877)
359 PF10579 Rapsyn_N: Rapsyn N-te 70.6 12 0.00025 27.3 4.6 48 556-609 18-66 (80)
360 KOG0687 26S proteasome regulat 70.0 1.1E+02 0.0023 29.5 14.4 95 475-571 106-208 (393)
361 COG5187 RPN7 26S proteasome re 69.5 1E+02 0.0022 29.1 11.8 97 473-571 115-219 (412)
362 KOG2168 Cullins [Cell cycle co 69.1 1.9E+02 0.0041 32.0 31.3 34 64-97 189-222 (835)
363 PF11663 Toxin_YhaV: Toxin wit 69.0 4.9 0.00011 32.6 2.7 35 596-630 105-139 (140)
364 PF07721 TPR_4: Tetratricopept 68.7 8.3 0.00018 21.0 2.9 20 514-533 6-25 (26)
365 KOG3364 Membrane protein invol 68.6 50 0.0011 27.2 8.2 70 583-652 29-104 (149)
366 TIGR03504 FimV_Cterm FimV C-te 68.2 12 0.00027 23.7 3.9 24 515-538 5-28 (44)
367 PF07163 Pex26: Pex26 protein; 66.0 77 0.0017 29.8 9.9 87 443-532 88-181 (309)
368 PF07575 Nucleopor_Nup85: Nup8 66.0 2E+02 0.0043 31.1 17.8 28 597-624 506-533 (566)
369 PF14689 SPOB_a: Sensor_kinase 65.9 17 0.00036 25.3 4.6 46 560-614 6-51 (62)
370 PF11846 DUF3366: Domain of un 65.4 11 0.00023 33.8 4.6 52 556-613 120-171 (193)
371 KOG0687 26S proteasome regulat 64.8 1.4E+02 0.003 28.9 15.2 95 509-612 104-207 (393)
372 TIGR03504 FimV_Cterm FimV C-te 64.8 18 0.00039 23.0 4.1 25 262-286 5-29 (44)
373 TIGR02508 type_III_yscG type I 64.4 55 0.0012 25.3 7.2 86 157-259 20-105 (115)
374 KOG1586 Protein required for f 64.2 1.2E+02 0.0026 27.8 21.3 22 520-541 165-186 (288)
375 PRK09687 putative lyase; Provi 63.2 1.4E+02 0.0031 28.5 29.4 219 217-466 34-262 (280)
376 PRK12798 chemotaxis protein; R 63.1 1.7E+02 0.0038 29.4 17.9 155 191-359 125-286 (421)
377 PF14853 Fis1_TPR_C: Fis1 C-te 62.5 7 0.00015 26.1 2.1 28 591-618 6-33 (53)
378 KOG4648 Uncharacterized conser 62.5 60 0.0013 31.3 8.8 88 339-432 106-194 (536)
379 COG4976 Predicted methyltransf 61.9 9.6 0.00021 34.3 3.4 60 595-654 4-64 (287)
380 KOG4077 Cytochrome c oxidase, 61.5 46 0.001 26.9 6.6 60 239-299 67-126 (149)
381 cd00280 TRFH Telomeric Repeat 61.2 28 0.00062 30.2 5.9 44 590-634 115-158 (200)
382 PF14689 SPOB_a: Sensor_kinase 61.2 21 0.00046 24.8 4.4 25 441-465 26-50 (62)
383 TIGR02508 type_III_yscG type I 60.9 76 0.0016 24.5 7.4 78 384-468 21-98 (115)
384 KOG1308 Hsp70-interacting prot 59.1 11 0.00023 36.2 3.4 22 599-620 195-216 (377)
385 PF04910 Tcf25: Transcriptiona 58.4 2E+02 0.0044 28.7 19.2 96 551-653 110-227 (360)
386 PF11846 DUF3366: Domain of un 58.0 35 0.00076 30.5 6.6 33 505-537 140-172 (193)
387 KOG2908 26S proteasome regulat 57.3 91 0.002 30.2 9.0 40 515-554 121-166 (380)
388 PF11663 Toxin_YhaV: Toxin wit 56.9 13 0.00028 30.3 3.1 29 452-482 109-137 (140)
389 PF13934 ELYS: Nuclear pore co 56.5 1.6E+02 0.0036 27.0 15.4 105 512-632 79-185 (226)
390 smart00028 TPR Tetratricopepti 56.0 23 0.00049 19.3 3.6 28 588-615 3-30 (34)
391 PF11838 ERAP1_C: ERAP1-like C 55.1 2.1E+02 0.0046 27.9 19.7 111 489-611 146-262 (324)
392 COG4785 NlpI Lipoprotein NlpI, 54.9 1.7E+02 0.0036 26.6 14.6 177 382-571 79-264 (297)
393 PF11768 DUF3312: Protein of u 54.4 1E+02 0.0022 32.2 9.5 43 594-640 502-544 (545)
394 KOG3807 Predicted membrane pro 54.3 1.1E+02 0.0024 29.4 9.0 103 382-499 230-337 (556)
395 PF11848 DUF3368: Domain of un 54.2 51 0.0011 21.4 5.1 32 267-298 13-44 (48)
396 KOG4077 Cytochrome c oxidase, 54.1 88 0.0019 25.4 7.1 45 527-571 67-111 (149)
397 PF11848 DUF3368: Domain of un 53.8 50 0.0011 21.4 5.0 32 379-410 13-44 (48)
398 KOG3364 Membrane protein invol 51.8 1.4E+02 0.003 24.8 8.9 68 139-206 29-99 (149)
399 smart00777 Mad3_BUB1_I Mad3/BU 51.7 1.3E+02 0.0029 24.5 8.8 46 158-203 79-124 (125)
400 cd00280 TRFH Telomeric Repeat 51.6 1.7E+02 0.0037 25.7 11.7 41 183-233 116-156 (200)
401 KOG2582 COP9 signalosome, subu 51.6 2.5E+02 0.0054 27.7 16.1 136 100-248 72-210 (422)
402 KOG2659 LisH motif-containing 51.5 1.4E+02 0.0029 27.3 8.8 62 329-395 25-91 (228)
403 PHA02875 ankyrin repeat protei 51.3 2.9E+02 0.0062 28.2 15.1 205 235-472 13-229 (413)
404 KOG2581 26S proteasome regulat 50.4 2.8E+02 0.006 27.9 12.8 26 511-536 211-236 (493)
405 COG4941 Predicted RNA polymera 49.3 2.3E+02 0.005 27.6 10.2 120 525-655 272-401 (415)
406 KOG0890 Protein kinase of the 48.8 6.8E+02 0.015 31.9 35.4 61 587-648 1671-1731(2382)
407 PF12862 Apc5: Anaphase-promot 48.5 84 0.0018 24.0 6.4 56 555-613 9-68 (94)
408 PF04097 Nic96: Nup93/Nic96; 47.6 4.1E+02 0.0089 29.0 19.7 65 255-320 110-181 (613)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 46.3 1.2E+02 0.0026 24.8 7.3 43 562-611 81-124 (126)
410 PF12862 Apc5: Anaphase-promot 45.7 93 0.002 23.7 6.3 21 376-396 49-69 (94)
411 PF08780 NTase_sub_bind: Nucle 45.2 1.7E+02 0.0036 23.9 8.1 85 192-286 4-89 (124)
412 KOG2659 LisH motif-containing 45.1 1.5E+02 0.0032 27.1 8.1 65 540-613 22-91 (228)
413 PF09670 Cas_Cas02710: CRISPR- 45.1 2.2E+02 0.0047 28.8 10.5 56 480-537 138-197 (379)
414 PF04090 RNA_pol_I_TF: RNA pol 45.0 2.3E+02 0.005 25.4 10.4 59 63-121 36-94 (199)
415 KOG4507 Uncharacterized conser 44.9 1.9E+02 0.0042 30.4 9.7 120 238-363 590-709 (886)
416 PF11817 Foie-gras_1: Foie gra 44.6 1.5E+02 0.0033 27.7 8.8 62 548-612 182-244 (247)
417 PF13762 MNE1: Mitochondrial s 44.4 1.9E+02 0.0042 24.3 12.4 88 216-304 33-128 (145)
418 KOG0889 Histone acetyltransfer 44.3 9.4E+02 0.02 32.2 27.2 222 227-467 2421-2661(3550)
419 PRK10941 hypothetical protein; 44.0 2.3E+02 0.0051 26.9 9.8 54 410-465 188-242 (269)
420 COG0790 FOG: TPR repeat, SEL1 44.0 3E+02 0.0065 26.4 18.6 17 524-540 206-222 (292)
421 COG2178 Predicted RNA-binding 43.3 2.4E+02 0.0052 25.1 9.9 17 450-466 133-149 (204)
422 cd08819 CARD_MDA5_2 Caspase ac 43.1 1.4E+02 0.0031 22.4 7.2 15 451-465 49-63 (88)
423 PF10366 Vps39_1: Vacuolar sor 43.0 1.7E+02 0.0036 23.2 9.1 27 511-537 41-67 (108)
424 PF09670 Cas_Cas02710: CRISPR- 42.8 3.7E+02 0.0081 27.1 12.4 57 445-502 138-198 (379)
425 KOG0403 Neoplastic transformat 42.3 3.9E+02 0.0084 27.2 24.4 443 73-559 55-589 (645)
426 PF14853 Fis1_TPR_C: Fis1 C-te 42.3 1E+02 0.0022 20.6 5.2 31 623-653 5-35 (53)
427 cd08819 CARD_MDA5_2 Caspase ac 42.3 1.5E+02 0.0032 22.3 6.9 67 563-640 21-87 (88)
428 KOG2581 26S proteasome regulat 41.9 3.8E+02 0.0082 27.0 11.5 137 67-207 123-276 (493)
429 PRK10564 maltose regulon perip 41.9 51 0.0011 31.4 4.9 26 261-286 262-287 (303)
430 PF08424 NRDE-2: NRDE-2, neces 41.7 3.5E+02 0.0076 26.5 15.8 31 514-544 159-190 (321)
431 COG5108 RPO41 Mitochondrial DN 41.5 1.7E+02 0.0037 31.3 8.8 75 225-303 33-115 (1117)
432 PRK06645 DNA polymerase III su 40.9 4.6E+02 0.01 27.7 12.4 19 235-253 271-289 (507)
433 PF03745 DUF309: Domain of unk 40.9 1.2E+02 0.0026 21.0 5.6 50 553-609 8-62 (62)
434 KOG4642 Chaperone-dependent E3 40.9 3E+02 0.0065 25.5 9.9 85 378-466 20-106 (284)
435 PF10366 Vps39_1: Vacuolar sor 40.8 1.8E+02 0.0039 23.0 7.8 27 405-431 41-67 (108)
436 COG0735 Fur Fe2+/Zn2+ uptake r 39.6 1.4E+02 0.0029 25.2 6.8 49 391-440 9-57 (145)
437 PF07163 Pex26: Pex26 protein; 39.6 3.4E+02 0.0074 25.8 14.0 129 69-202 36-182 (309)
438 PF09454 Vps23_core: Vps23 cor 39.5 96 0.0021 21.8 4.9 50 365-415 5-54 (65)
439 PF10255 Paf67: RNA polymerase 39.3 2.2E+02 0.0048 28.8 9.2 118 493-613 59-191 (404)
440 PF04090 RNA_pol_I_TF: RNA pol 39.1 2.9E+02 0.0062 24.8 13.1 27 476-502 44-70 (199)
441 PF10475 DUF2450: Protein of u 38.8 2.1E+02 0.0046 27.6 9.0 52 409-466 104-155 (291)
442 PRK10564 maltose regulon perip 38.8 62 0.0013 30.8 5.0 45 504-548 251-296 (303)
443 PF13934 ELYS: Nuclear pore co 38.7 2.8E+02 0.0061 25.5 9.3 14 154-167 152-165 (226)
444 KOG4567 GTPase-activating prot 38.3 2E+02 0.0043 27.6 8.0 70 458-533 263-342 (370)
445 PHA02537 M terminase endonucle 37.4 2.3E+02 0.0051 26.0 8.3 50 475-541 66-115 (230)
446 KOG1464 COP9 signalosome, subu 36.9 3.6E+02 0.0078 25.3 23.4 288 250-546 20-339 (440)
447 PF12968 DUF3856: Domain of Un 36.4 2.3E+02 0.005 22.9 7.3 68 544-613 55-127 (144)
448 KOG4279 Serine/threonine prote 35.8 6.3E+02 0.014 27.8 15.1 84 346-432 179-272 (1226)
449 PF14561 TPR_20: Tetratricopep 35.7 1.9E+02 0.0042 21.9 6.6 49 140-188 20-68 (90)
450 KOG0376 Serine-threonine phosp 35.1 38 0.00083 34.3 3.2 94 551-653 11-106 (476)
451 PRK14951 DNA polymerase III su 34.0 6.6E+02 0.014 27.4 12.4 96 526-631 187-296 (618)
452 PRK11639 zinc uptake transcrip 33.8 2.1E+02 0.0045 24.9 7.3 59 394-453 17-75 (169)
453 PF12968 DUF3856: Domain of Un 33.7 2.6E+02 0.0056 22.6 7.2 23 290-312 54-76 (144)
454 PF10475 DUF2450: Protein of u 33.7 4E+02 0.0086 25.7 10.0 54 182-249 102-155 (291)
455 KOG0686 COP9 signalosome, subu 33.6 5.2E+02 0.011 26.1 14.3 61 406-466 153-215 (466)
456 COG5159 RPN6 26S proteasome re 33.3 4.3E+02 0.0094 25.1 20.9 209 74-320 9-235 (421)
457 PRK14958 DNA polymerase III su 32.9 6.2E+02 0.013 26.8 12.4 29 225-255 251-279 (509)
458 KOG2908 26S proteasome regulat 32.8 3.5E+02 0.0076 26.4 8.8 59 338-396 83-143 (380)
459 PRK08691 DNA polymerase III su 32.4 6.8E+02 0.015 27.7 12.0 32 222-255 248-279 (709)
460 COG2178 Predicted RNA-binding 32.3 3.6E+02 0.0079 24.0 10.2 78 158-250 19-98 (204)
461 smart00386 HAT HAT (Half-A-TPR 32.1 69 0.0015 17.8 3.0 28 600-627 1-29 (33)
462 KOG0545 Aryl-hydrocarbon recep 32.1 3.9E+02 0.0084 24.9 8.5 61 591-653 235-298 (329)
463 KOG1308 Hsp70-interacting prot 32.0 33 0.00071 33.1 2.1 94 556-658 126-221 (377)
464 PRK08691 DNA polymerase III su 31.9 6.2E+02 0.013 28.0 11.6 36 543-586 245-280 (709)
465 PF02847 MA3: MA3 domain; Int 31.7 2.3E+02 0.005 22.3 6.9 23 334-356 6-28 (113)
466 PRK13342 recombination factor 31.4 5.9E+02 0.013 26.1 17.1 171 120-319 154-333 (413)
467 KOG2396 HAT (Half-A-TPR) repea 31.4 6.2E+02 0.014 26.4 38.4 104 541-653 456-565 (568)
468 PF09477 Type_III_YscG: Bacter 31.3 2.6E+02 0.0057 22.0 8.4 77 385-468 23-99 (116)
469 PF15297 CKAP2_C: Cytoskeleton 31.2 4.9E+02 0.011 25.7 9.6 61 526-595 120-184 (353)
470 COG4715 Uncharacterized conser 30.9 6.6E+02 0.014 26.6 21.3 213 331-571 304-525 (587)
471 PRK10941 hypothetical protein; 30.5 1.4E+02 0.003 28.4 6.0 63 590-652 185-248 (269)
472 PF15297 CKAP2_C: Cytoskeleton 30.3 3.8E+02 0.0082 26.4 8.8 66 490-555 120-186 (353)
473 PF09797 NatB_MDM20: N-acetylt 30.3 5.7E+02 0.012 25.6 21.0 57 489-547 199-255 (365)
474 PRK14963 DNA polymerase III su 29.9 6.7E+02 0.015 26.5 11.5 14 191-204 208-221 (504)
475 KOG2471 TPR repeat-containing 29.2 6.7E+02 0.015 26.1 12.3 284 234-520 30-380 (696)
476 PRK09857 putative transposase; 29.0 4.1E+02 0.0089 25.7 9.1 66 547-620 209-274 (292)
477 PF02184 HAT: HAT (Half-A-TPR) 28.8 83 0.0018 18.4 2.6 24 193-225 2-25 (32)
478 COG5108 RPO41 Mitochondrial DN 28.6 3.6E+02 0.0078 29.0 8.8 97 73-170 33-131 (1117)
479 COG0735 Fur Fe2+/Zn2+ uptake r 28.5 2.6E+02 0.0056 23.6 6.8 64 424-488 7-70 (145)
480 PF05944 Phage_term_smal: Phag 28.5 1.7E+02 0.0036 24.2 5.3 42 584-626 47-89 (132)
481 PRK11619 lytic murein transgly 28.1 8.4E+02 0.018 26.9 38.8 120 342-466 253-374 (644)
482 PF11817 Foie-gras_1: Foie gra 28.0 1.9E+02 0.004 27.1 6.5 20 513-532 222-241 (247)
483 PF04190 DUF410: Protein of un 27.6 5.3E+02 0.011 24.4 19.3 129 282-432 40-170 (260)
484 PF11768 DUF3312: Protein of u 27.0 4.4E+02 0.0096 27.8 9.1 23 147-169 413-435 (545)
485 PRK07003 DNA polymerase III su 26.9 7.7E+02 0.017 27.7 11.3 93 490-592 181-286 (830)
486 PF00244 14-3-3: 14-3-3 protei 26.9 5.2E+02 0.011 24.0 12.3 57 374-430 7-64 (236)
487 PF09986 DUF2225: Uncharacteri 26.7 4.9E+02 0.011 23.7 9.6 49 158-206 141-193 (214)
488 KOG4521 Nuclear pore complex, 26.6 1.1E+03 0.024 27.7 16.7 131 510-650 984-1134(1480)
489 KOG0376 Serine-threonine phosp 26.6 1.5E+02 0.0032 30.3 5.7 102 481-596 12-115 (476)
490 PF03745 DUF309: Domain of unk 26.6 2.2E+02 0.0049 19.7 5.6 47 520-566 10-61 (62)
491 KOG0292 Vesicle coat complex C 26.4 2.3E+02 0.0049 31.6 7.1 72 483-570 653-724 (1202)
492 PF09986 DUF2225: Uncharacteri 26.4 5E+02 0.011 23.7 9.1 33 219-251 163-195 (214)
493 PF06957 COPI_C: Coatomer (COP 26.3 3.8E+02 0.0082 27.4 8.4 44 528-571 282-327 (422)
494 COG2256 MGS1 ATPase related to 26.1 7E+02 0.015 25.3 15.8 52 366-417 244-298 (436)
495 PRK14958 DNA polymerase III su 25.9 8.2E+02 0.018 26.0 11.5 37 542-586 244-280 (509)
496 PF07720 TPR_3: Tetratricopept 25.6 66 0.0014 19.4 2.0 18 592-609 7-24 (36)
497 PRK12798 chemotaxis protein; R 25.4 7.3E+02 0.016 25.2 21.8 197 416-620 125-329 (421)
498 cd07153 Fur_like Ferric uptake 25.4 1.5E+02 0.0033 23.5 4.8 46 226-272 6-51 (116)
499 PF12926 MOZART2: Mitotic-spin 25.3 3E+02 0.0065 20.7 7.0 62 254-317 8-69 (88)
500 PF14669 Asp_Glu_race_2: Putat 25.2 4.9E+02 0.011 23.2 15.7 58 513-570 136-207 (233)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.7e-75 Score=642.79 Aligned_cols=545 Identities=15% Similarity=0.159 Sum_probs=466.7
Q ss_pred ccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc---------------------------
Q 038801 64 TQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSL--------------------------- 116 (662)
Q Consensus 64 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--------------------------- 116 (662)
+.++..+++.++.++++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 34556667778888888888888888888877777666666665555554443
Q ss_pred --------CCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcc----------
Q 038801 117 --------QDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFE---------- 178 (662)
Q Consensus 117 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------- 178 (662)
|+...+.+.|+.+ ..+|..+|+.++.+|++.|++++|+.+|++|...|..|+..
T Consensus 127 li~~~~~~g~~~~A~~~f~~m--------~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKM--------PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcC--------CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 4333333333221 23677788888888888888888888888887777666533
Q ss_pred ------------------------cHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccC
Q 038801 179 ------------------------LWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGL 234 (662)
Q Consensus 179 ------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 234 (662)
..++.|+.+|+++|++++|.++|++| ..||.++||++|.+|++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m-----------~~~d~~s~n~li~~~~~~- 266 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM-----------PRRDCISWNAMISGYFEN- 266 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC-----------CCCCcchhHHHHHHHHhC-
Confidence 34577889999999999999999998 578999999999999998
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTI 314 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 314 (662)
|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHH
Q 038801 315 LLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394 (662)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 394 (662)
.+|.. ||..+||.+|.+|++.|++++|+++|++|.+ .|+.||..||+.++.+|++.|++++|.++++.|
T Consensus 347 ~~m~~--------~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~---~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 347 SRMET--------KDAVSWTAMISGYEKNGLPDKALETYALMEQ---DNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred hhCCC--------CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 66532 4899999999999999999999999999988 899999999999999999999999999999999
Q ss_pred HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc
Q 038801 395 NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG 474 (662)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 474 (662)
.+.|+.|+..+|++||.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 9999999999999999999999999999999999974 5888888888888888888888888888875 4677777
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------------------------ccchhhHHHHHHHHHhcCC
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRV------------------------------EVKTHDWNSIIHAFCKAGR 524 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------~p~~~~~~~li~~~~~~g~ 524 (662)
||+.++.+|++.|..+.+.+++..+.+. |+ .+|..+||+||.+|++.|+
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 7776665555554444444444433332 11 5688899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHH
Q 038801 525 LEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDA 604 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 604 (662)
.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+ +.|+.|+..+|+.++.+|.+.|++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~------~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE------KYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH------HhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999999999999999984 57999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 605 VMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 605 A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
|.+++++|. ..+.+..|..++.+|..+++.+.++.+.+++++++|.+
T Consensus 644 A~~~~~~m~-~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 644 AYNFINKMP-ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 999999984 34445589999999999999999999999999999974
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.7e-71 Score=598.36 Aligned_cols=524 Identities=14% Similarity=0.145 Sum_probs=485.6
Q ss_pred cchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCC-CCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChH
Q 038801 65 QDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSL-FPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQ 143 (662)
Q Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (662)
.++...|..++..+++.|++++|+++|++|.+.|+ .++...++.++.+|.+.|....+...+..+ . .|+..
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M----~----~pd~~ 438 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI----R----NPTLS 438 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc----C----CCCHH
Confidence 34677888999999999999999999999999885 567788889999999999876666655443 1 28999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHH
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYAC 223 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (662)
+|+.++.+|++.|+++.|..+|++|.+.|..|+.. .++.|+.+|++.|++++|.++|++|.+ .|+.||..+|
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~-tynsLI~~y~k~G~vd~A~~vf~eM~~-------~Gv~PdvvTy 510 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-LYTTLISTCAKSGKVDAMFEVFHEMVN-------AGVEANVHTF 510 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCcCHHHHHHHHHHHHH-------cCCCCCHHHH
Confidence 99999999999999999999999999998765554 478899999999999999999999987 5889999999
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCcHHhHHHHHHHH
Q 038801 224 NAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNE--FGFSSQMVFYSSLISGY 301 (662)
Q Consensus 224 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~ 301 (662)
|.+|.+|++. |++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|
T Consensus 511 naLI~gy~k~-G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 511 GALIDGCARA-GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 9999999998 99999999999999999999999999999999999999999999999986 67899999999999999
Q ss_pred HhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc
Q 038801 302 VKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL 381 (662)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (662)
++.|++++|.++|.+|.+. ++.|+..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++++.+|++.
T Consensus 590 ~k~G~ldeA~elf~~M~e~----gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~---~Gv~PD~~TynsLI~a~~k~ 662 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEY----NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK---KGVKPDEVFFSALVDVAGHA 662 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc----CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhC
Confidence 9999999999998777665 7889999999999999999999999999999998 89999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 038801 382 GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLF 461 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (662)
|++++|.+++++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|
T Consensus 663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----c---------------
Q 038801 462 RDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----A--------------- 522 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~--------------- 522 (662)
++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+. |+.||..+|++++..|.+ +
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~ 821 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRP 821 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999986 999999999999976432 1
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHc
Q 038801 523 ----GRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVK 598 (662)
Q Consensus 523 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 598 (662)
+..+.|..+|++|++.|+.||..||+.++.++++.+..+.+..++++|. ..+..|+..+|+.++.++.+
T Consensus 822 ~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-------~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 822 QIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-------ISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred ccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-------cCCCCcchhhhHHHHHhhcc
Confidence 1246799999999999999999999999988888899999999999998 78899999999999999843
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHH
Q 038801 599 GGFFDAVMQVVEKSQEMKVFVDKW 622 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~~~~p~~~ 622 (662)
. .++|..++++|.+.|+.|+..
T Consensus 895 ~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 895 Y--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred C--hHHHHHHHHHHHHcCCCCCcc
Confidence 2 468999999999999999863
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.9e-67 Score=569.03 Aligned_cols=517 Identities=15% Similarity=0.111 Sum_probs=473.7
Q ss_pred CCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCC-CCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCc
Q 038801 99 LFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNP-KLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPF 177 (662)
Q Consensus 99 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 177 (662)
..++...|..++..+.+.|+..++.+.|+.+ ...+ ..++..+++.++.+|.+.|.+++|+.+++.|.. ++
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M----~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd 436 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDM----EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PT 436 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHH----HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CC
Confidence 3467788999999999999988888887765 3445 457788888999999999999999999999964 45
Q ss_pred ccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcc
Q 038801 178 ELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNES 257 (662)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 257 (662)
...++.++..|++.|+++.|.++|++|.+ .|+.||..+||.+|.+|++. |++++|.++|++|.+.|+.||..
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-------~Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQE-------AGLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHcCCCCCHH
Confidence 56688899999999999999999999988 68999999999999999998 99999999999999999999999
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Q 038801 258 SFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV 337 (662)
Q Consensus 258 t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li 337 (662)
||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|.+|.... .++.||..+|+++|
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~--~gi~PD~vTynaLI 586 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET--HPIDPDHITVGALM 586 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc--CCCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988887642 37889999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH 417 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (662)
.+|++.|++++|.++|++|.+ .++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 587 ~ay~k~G~ldeA~elf~~M~e---~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 587 KACANAGQVDRAKEVYQMIHE---YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHH---cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 038801 418 RTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLD 497 (662)
Q Consensus 418 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 497 (662)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|+
T Consensus 664 ~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~ 743 (1060)
T PLN03218 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------------------
Q 038801 498 EVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT--------------------- 556 (662)
Q Consensus 498 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--------------------- 556 (662)
+|.+. |+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+..|.+
T Consensus 744 eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~ 822 (1060)
T PLN03218 744 EMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ 822 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 99986 99999999999999999999999999999999999999999999999976542
Q ss_pred --cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhH--HHHHHHHh
Q 038801 557 --AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY--KQAFMENH 632 (662)
Q Consensus 557 --~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~~~~~~~ 632 (662)
.+..++|+.+|++|. +.|+.||..||+.++.++.+.+..+.+..+++.|...+..|+..++ ++..+
T Consensus 823 ~~n~w~~~Al~lf~eM~-------~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--- 892 (1060)
T PLN03218 823 IENKWTSWALMVYRETI-------SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--- 892 (1060)
T ss_pred cccchHHHHHHHHHHHH-------HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---
Confidence 123467999999999 8999999999999998888999999999999999877777774444 34443
Q ss_pred hh-hhhhHHHHHHHHhh
Q 038801 633 KK-LKVAKLRKRNFKKM 648 (662)
Q Consensus 633 ~~-~~~a~~~~~~~~~l 648 (662)
++ .+.|..+++.+.++
T Consensus 893 ~~~~~~A~~l~~em~~~ 909 (1060)
T PLN03218 893 GEYDPRAFSLLEEAASL 909 (1060)
T ss_pred ccChHHHHHHHHHHHHc
Confidence 32 35677777776663
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.1e-68 Score=573.96 Aligned_cols=475 Identities=15% Similarity=0.143 Sum_probs=433.4
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccH
Q 038801 101 PSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELW 180 (662)
Q Consensus 101 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 180 (662)
.+..+|+.++.++.+.|+..++.+.|+.+ ....+..|+..+|+.++.+|++.++++.|.+++..|.+.|..|+ ...
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m---~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~ 160 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEIL---EAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYM 160 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHH---HhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHH
Confidence 34445566666666665544444444332 12234557778888888888888888999999999999887765 455
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHH
Q 038801 181 GGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFG 260 (662)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 260 (662)
++.|+.+|.+.|++++|.++|++| ..||..+||++|.+|++. |++++|+++|++|.+.|+.||..||+
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m-----------~~~~~~t~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEM-----------PERNLASWGTIIGGLVDA-GNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcC-----------CCCCeeeHHHHHHHHHHC-cCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 778889999999999999999998 568999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHH
Q 038801 261 FLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGF 340 (662)
Q Consensus 261 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 340 (662)
.++.+|++.|..+.+.+++..+.+.|+.+|..+|++||++|+++|++++|.++|.++.+ +|.++||.+|.+|
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------~~~vt~n~li~~y 300 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE--------KTTVAWNSMLAGY 300 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--------CChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999766533 3999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 038801 341 LQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (662)
++.|+.++|+++|++|.+ .|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|+++|+++
T Consensus 301 ~~~g~~~eA~~lf~~M~~---~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRD---SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 999999999999999988 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 500 (662)
+|.++|++|. .||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 378 ~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999997 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC
Q 038801 501 EDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK 580 (662)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 580 (662)
++.++.|+..+|++|+.+|++.|++++|.+++++| ++.||..+|++|+.+|...|+++.|..+++++.
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--------- 521 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--------- 521 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---------
Confidence 88899999999999999999999999999999887 478999999999999999999999999999998
Q ss_pred CCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 581 GIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 581 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
++.|+ ..+|..|+..|.+.|++++|.+++++|.+.|+.
T Consensus 522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 56675 579999999999999999999999999999875
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.9e-67 Score=583.01 Aligned_cols=506 Identities=14% Similarity=0.115 Sum_probs=460.7
Q ss_pred cchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHH
Q 038801 65 QDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQT 144 (662)
Q Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (662)
.++..+++.++..|++.|+++.|..+|+.|.. ||..+||.++.+|.+.|+..++.+.|.. |...+..||..+
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~----M~~~g~~Pd~~t 290 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT----MRELSVDPDLMT 290 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH----HHHcCCCCChhH
Confidence 34566667777777777788888888877764 6777788888888888876666666654 457788899999
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHH
Q 038801 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACN 224 (662)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (662)
|+.++.+|++.|+.+.|.+++..|.+.|..|+ ...++.|+.+|.+.|++++|.++|++| ..||..+||
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d-~~~~n~Li~~y~k~g~~~~A~~vf~~m-----------~~~d~~s~n 358 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVD-VSVCNSLIQMYLSLGSWGEAEKVFSRM-----------ETKDAVSWT 358 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccc-hHHHHHHHHHHHhcCCHHHHHHHHhhC-----------CCCCeeeHH
Confidence 99999999999999999999999998886655 455788999999999999999999998 568999999
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc
Q 038801 225 AALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304 (662)
Q Consensus 225 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 304 (662)
++|.+|++. |++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+.|+.|+..+|++||++|+++
T Consensus 359 ~li~~~~~~-g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 359 AMISGYEKN-GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCCh
Q 038801 305 GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLS 384 (662)
Q Consensus 305 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 384 (662)
|++++|.++|.++.+ +|..+|+.+|.+|++.|+.++|+++|++|.. ++.||..||++++.+|++.|++
T Consensus 438 g~~~~A~~vf~~m~~--------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~----~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 438 KCIDKALEVFHNIPE--------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL----TLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred CCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh----CCCCCHhHHHHHHHHHhhhchH
Confidence 999999999766543 3889999999999999999999999999974 6999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
+.+.+++..+.+.|+.+|..++|+||.+|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 579999999999999999999999999999
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 465 REARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 465 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
.+.|+.||..||+.++.+|++.|++++|.++|+.|.++.++.|+..+|++|+.+|++.|++++|.+++++|. ++||.
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~ 657 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP 657 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH
Confidence 999999999999999999999999999999999999778999999999999999999999999999999995 79999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 620 (662)
.+|++|+.+|...|+.+.+....+++. .+.|+. ..|..|.+.|.+.|++++|.++.+.|++.|+.++
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~---------~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIF---------ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH---------hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999988888 456654 6778888899999999999999999999988754
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.8e-61 Score=519.01 Aligned_cols=473 Identities=14% Similarity=0.109 Sum_probs=442.0
Q ss_pred CCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCC
Q 038801 138 KLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMK 217 (662)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (662)
...+..+++.++..+.+.|++++|+++|+.|...+...++...++.++.+|.+.++++.|.+++..|.+ .|+.
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~-------~g~~ 155 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES-------SGFE 155 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------hCCC
Confidence 345556899999999999999999999999998765555666688899999999999999999999987 5899
Q ss_pred ccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHH
Q 038801 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSL 297 (662)
Q Consensus 218 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (662)
||..+||.++.+|++. |++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 156 ~~~~~~n~Li~~y~k~-g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 230 (697)
T PLN03081 156 PDQYMMNRVLLMHVKC-GMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVM 230 (697)
T ss_pred cchHHHHHHHHHHhcC-CCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHH
Confidence 9999999999999998 99999999999996 589999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~ 377 (662)
+.+|++.|..+.+.+++..+.+. |..||..+||.||.+|++.|++++|.++|++|.. +|..+|+++|.+
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~----g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~~~vt~n~li~~ 299 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKT----GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------KTTVAWNSMLAG 299 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHh----CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------CChhHHHHHHHH
Confidence 99999999999999987666654 7788999999999999999999999999999853 588999999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSA 457 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 457 (662)
|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 458 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.+. |+.||..||+.++.+|++.|+.++|.++|+.|.+
T Consensus 380 ~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 380 RNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999964 67899999999999999999999999999986 9999999999999999999999999999999986
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 538 -LQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 538 -~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
.|+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.+
T Consensus 455 ~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 599999999999999999999999999998654 478999999999999999999999999999997766
Q ss_pred CC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhh
Q 038801 617 VF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 617 ~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l 648 (662)
+. +..+..+...+...|+++.|.++.+.+.+.
T Consensus 525 p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 64 457888888999999999999999888764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-30 Score=295.21 Aligned_cols=534 Identities=12% Similarity=0.039 Sum_probs=249.5
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHH
Q 038801 69 TSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTL 148 (662)
Q Consensus 69 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (662)
..+..+...+...|++++|+..++.+...... +...+..+...+.+.|+.+.+...++... ... +.+...+..+
T Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~~~l 403 (899)
T TIGR02917 330 QARRLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKAT---ELD--PENAAARTQL 403 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcC--CCCHHHHHHH
Confidence 33444445555556666666665555543321 34445555555555555554444444332 111 1233344444
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHH
Q 038801 149 LGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALE 228 (662)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 228 (662)
...+...|++++|+..++.+.+.. |........++..+.+.|++++|.++++++... ...+..+|+.+..
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~ 473 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKK--------QPDNASLHNLLGA 473 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCcHHHHHHHH
Confidence 555555555555555555554432 222222233344444445555555554444331 2223334444444
Q ss_pred HHhcc---------------------------------CCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHH
Q 038801 229 GCCYG---------------------------------LQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKI 275 (662)
Q Consensus 229 ~~~~~---------------------------------~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 275 (662)
.+... .|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHH
Confidence 44443 144455555444444332 22333444444444445555555
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 276 VELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIE 355 (662)
Q Consensus 276 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 355 (662)
..+++.+.+.+ +.+...+..+...|.+.|+.++|..++.++++..+ .+...|..+..++...|++++|.+.|++
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-----DSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55554444432 22333444444555555555555554444443211 1344455555555555555555555555
Q ss_pred HHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 038801 356 AQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ 435 (662)
Q Consensus 356 m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (662)
+.+..+ .+...+..+..++...|++++|..+++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ .
T Consensus 627 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 627 LLALQP----DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 443211 122234444445555555555555555554432 3334455555555555555555555555554442 1
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHH
Q 038801 436 LDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515 (662)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 515 (662)
.+...+..+...+...|++++|...|+++.+.+ |+..++..+...+.+.|+.++|.+.++++.+.. ..+...+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 234444445555555555555555555555442 222344445555555555555555555554431 1233445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLY 594 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~ 594 (662)
...|...|++++|.++|+++.+.. ..+...++.+...+...|+ .+|+.+++++.. ..|+ ..++..+..
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~---------~~~~~~~~~~~~~~ 845 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK---------LAPNIPAILDTLGW 845 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh---------hCCCCcHHHHHHHH
Confidence 555555555555555555555432 2233455555555555555 445555555551 1222 234444555
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHH
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFK 646 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~ 646 (662)
++.+.|++++|.++++++.+.++. |.++..+...+...|+.+.|.+.+++++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555555555555555555554442 3444444444455555555555555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.9e-30 Score=293.44 Aligned_cols=541 Identities=11% Similarity=0.026 Sum_probs=350.9
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q 038801 70 SLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLL 149 (662)
Q Consensus 70 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 149 (662)
.+..+...+...|++++|...|+.+.+..+. +...+..+...+.+.|+...+...+..+. . ..+.+...+..+.
T Consensus 297 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~--~~~~~~~~~~~l~ 370 (899)
T TIGR02917 297 ALLLAGASEYQLGNLEQAYQYLNQILKYAPN-SHQARRLLASIQLRLGRVDEAIATLSPAL---G--LDPDDPAALSLLG 370 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHH---h--cCCCCHHHHHHHH
Confidence 3444556677899999999999999875432 45667778888999999887777776542 2 2345677889999
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHH
Q 038801 150 GSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEG 229 (662)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (662)
..+...|++++|..+|+++.+.. |.....+..+...+...|++++|.+.|+++.+. ..........++..
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQL--------DPELGRADLLLILS 440 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh--------CCcchhhHHHHHHH
Confidence 99999999999999999998753 556666777888888999999999999999763 11223455567778
Q ss_pred HhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhh
Q 038801 230 CCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 309 (662)
+.+. |++++|+.+++.+.... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 441 ~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 441 YLRS-GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHhc-CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 8887 99999999999998653 5567788889999999999999999999988764 3446667778888888888888
Q ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHH
Q 038801 310 ASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHS 389 (662)
Q Consensus 310 A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 389 (662)
|.+.|.+++...+. +..++..+...+.+.|+.++|..+++++....+ .+...+..+...+...|++++|..
T Consensus 518 A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 518 AIQRFEKVLTIDPK-----NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP----QEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHHHHHHHHHhCcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cchhHHHHHHHHHHHCCCHHHHHH
Confidence 88888877765322 566777777777777777777777777654222 233344556666666666666666
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 038801 390 ILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI 469 (662)
Q Consensus 390 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 469 (662)
+++.+.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. ..+...+..+..++.+.|++++|..+|+++.+..
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 666665543 4455566666666666666666666666665542 1234455555566666666666666666655543
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------------------------------ccchhhHHHHHHH
Q 038801 470 YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRV-------------------------------EVKTHDWNSIIHA 518 (662)
Q Consensus 470 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------------~p~~~~~~~li~~ 518 (662)
+.+..++..+...+...|+.++|..+++.+.+..+. .|+..++..+..+
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 333445555555555555555555555555443111 1222333444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHc
Q 038801 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVK 598 (662)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 598 (662)
+.+.|++++|.+.++++.+.. ..+...+..+...|...|++++|.++|+++. ... +.+..++..+...+.+
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-------~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV-------KKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-------HhC-CCCHHHHHHHHHHHHh
Confidence 444455555555554444431 2233455555555555555555555555555 111 2234555555555555
Q ss_pred cCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 599 GGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
.|+ ++|+++++++.+..+. |..+..+...+...|+.+.|...++++++++|.
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 555 5566666555444332 334444444455557777777777777776664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=8.6e-22 Score=224.84 Aligned_cols=531 Identities=11% Similarity=-0.007 Sum_probs=357.9
Q ss_pred HHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 038801 73 TNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSM 152 (662)
Q Consensus 73 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (662)
...+.+...|++++|+..|+.+.+....................++.+++.+.++.+ ....|. +...+..+...+
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l---l~~~P~--~~~~~~~LA~ll 191 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRL---NADYPG--NTGLRNTLALLL 191 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHH---HHhCCC--CHHHHHHHHHHH
Confidence 334467789999999999999987543221111111122223346666666666654 444444 456778899999
Q ss_pred HhcCCchhHHHHHHHHHhcCCC--------------------------------CCcccH--------------------
Q 038801 153 RNANTAAPAFALVKCMFKNRYF--------------------------------MPFELW-------------------- 180 (662)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~-------------------- 180 (662)
...|+.++|+..++++.+.... |.....
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 9999999999999998653210 000000
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCc-cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcc--
Q 038801 181 GGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKP-NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNES-- 257 (662)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-- 257 (662)
.......+...|++++|+..|++..+ ..| +...+..+-..+.+. |++++|+..|++..+.. |+..
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~---------~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~l~~Al~~~--p~~~~~ 339 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVR---------ANPKDSEALGALGQAYSQQ-GDRARAVAQFEKALALD--PHSSNR 339 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC--CCccch
Confidence 00112334456777778877777766 233 455666666777776 88888888887776543 2221
Q ss_pred -cH---------H---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCC
Q 038801 258 -SF---------G---FLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME 324 (662)
Q Consensus 258 -t~---------~---~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 324 (662)
.+ . .....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|.+.++..+.
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~- 417 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG- 417 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 11 1 11234567778888888887777763 334556666777778888888888877777765322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc-----ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 038801 325 QSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGI-----VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC 399 (662)
Q Consensus 325 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 399 (662)
+...+..+...+. .++.++|+.+++.+....+..+ ......+..+...+...|++++|.+.|++.++..
T Consensus 418 ----~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~- 491 (1157)
T PRK11447 418 ----NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD- 491 (1157)
T ss_pred ----CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 4455656666553 4567777777765422100000 0011234445667778899999999999988864
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc-----
Q 038801 400 SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLK----- 473 (662)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----- 473 (662)
+.+...+..+...|.+.|++++|...|+++.+. .| +...+..+...+...|+.++|+..++.+......+..
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~ 569 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ 569 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH
Confidence 446677888888999999999999999998875 34 4444555555667789999999988876543222211
Q ss_pred ----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 038801 474 ----GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYL 548 (662)
Q Consensus 474 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~ 548 (662)
..+..+...+...|+.++|..+++. . + .+...+..+...+.+.|++++|++.|++..+. .| +...+.
T Consensus 570 ~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---~-p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~ 641 (1157)
T PRK11447 570 RLQSDQVLETANRLRDSGKEAEAEALLRQ---Q-P--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARL 641 (1157)
T ss_pred HHhhhHHHHHHHHHHHCCCHHHHHHHHHh---C-C--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 1233455678889999999998872 1 2 23456778889999999999999999999985 45 457899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CC------
Q 038801 549 SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VD------ 620 (662)
Q Consensus 549 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~------ 620 (662)
.++..+...|++++|++.++... ...|+ ..+...+..++...|++++|.++++++.+.... |.
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll---------~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~ 712 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLP---------ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESAL 712 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh---------ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHH
Confidence 99999999999999999999887 33444 456677888899999999999999999765433 22
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 621 KWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 621 ~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
.+..........|+.+.|...+++++.
T Consensus 713 ~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 713 VLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 222335566778999999999988874
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.2e-21 Score=223.56 Aligned_cols=550 Identities=11% Similarity=0.016 Sum_probs=340.0
Q ss_pred cccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhH-----------------HHHHHHHhccCCchhHHHH
Q 038801 63 LTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVT-----------------NSLIAHLSSLQDNHNLKRA 125 (662)
Q Consensus 63 ~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-----------------~~ll~~~~~~~~~~~~~~~ 125 (662)
..+.++..+....+.+...|+.++|.+.++++.+..+. ...+ ..+...+.+.|+.+++...
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~--~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~ 134 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD--SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALAS 134 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHH
Confidence 33446777888889999999999999999999886633 2221 2233467788888888887
Q ss_pred HHHHHHHHHhCCCCCChHH-HHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHH
Q 038801 126 FASVVYVIEKNPKLLDFQT-VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEEC 204 (662)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (662)
++... . ..+++... ...........|+.++|+..++++.+.. |........+..++...|+.++|++.|+++
T Consensus 135 ~~~~l---~--~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 135 YDKLF---N--GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHc---c--CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77652 2 22333221 1111222234689999999999999863 666777788899999999999999999998
Q ss_pred HHhhhh---------hhcC--CCCc-cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH
Q 038801 205 CRIALD---------ENLD--FMKP-NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQ 272 (662)
Q Consensus 205 ~~~~~~---------~~~~--~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 272 (662)
...... .... +..+ ....+...+..+-.. ...+.|...+..+......|+... ......+...|++
T Consensus 208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~-~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~ 285 (1157)
T PRK11447 208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG-DSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQG 285 (1157)
T ss_pred hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc-hHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCH
Confidence 542100 0000 0001 111222223222222 234445555555443322222211 1223445566777
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHH------------HHHHHH
Q 038801 273 EKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYC------------EVVKGF 340 (662)
Q Consensus 273 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~------------~li~~~ 340 (662)
++|...|++..+.. +.+..++..|...|.+.|+.++|+..|.+.++..+.. +....|. .....+
T Consensus 286 ~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~---~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 286 GKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS---SNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---cchhHHHHHHHhhhHHHHHHHHHHH
Confidence 77777777776653 2346666677777777777777777776666543211 1111111 123345
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH-----------
Q 038801 341 LQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPT----------- 409 (662)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l----------- 409 (662)
.+.|++++|++.|+++....+. +...+..+...+...|++++|++.|+++.+.. +.+...+..+
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P~----~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDNT----DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHH
Confidence 5677777777777776653221 23344556666777777777777777766543 2233333333
Q ss_pred -------------------------------HHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHH
Q 038801 410 -------------------------------LKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSA 457 (662)
Q Consensus 410 -------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A 457 (662)
...+...|++++|.+.|++..+. .| +...+..+...|.+.|++++|
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33444566666777777666655 33 344555666666777777777
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccch---------hhHHHHHHHHHhcCCHHHH
Q 038801 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKT---------HDWNSIIHAFCKAGRLEDA 528 (662)
Q Consensus 458 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A 528 (662)
...++++.+.. +.+...+..+...+...++.++|...++.+... ...++. ..+..+...+...|+.++|
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 77777666543 333333444444455666667776666655332 111111 1122345667778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHH
Q 038801 529 KRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQ 607 (662)
Q Consensus 529 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
.++++. ...+...+..+...+.+.|++++|++.|+++. ...|+ ...+..+...+...|++++|.+
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al---------~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL---------TREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888772 13355677788899999999999999999999 23454 5788889999999999999999
Q ss_pred HHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHH
Q 038801 608 VVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEA 650 (662)
Q Consensus 608 ~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p 650 (662)
.++...+..+. ++....+.......|+.++|...++++++..|
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99998766543 44555555566678999999999999988753
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.8e-19 Score=196.23 Aligned_cols=524 Identities=10% Similarity=0.038 Sum_probs=352.2
Q ss_pred hCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchh
Q 038801 81 TNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAP 160 (662)
Q Consensus 81 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 160 (662)
.|++++|+..|++..+..+. +...+..+.+.+...|+.+.+...++... ... |+-..|..++..+ +++++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv---~ld---P~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQL---KRH---PGDARLERSLAAI---PVEVK 126 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcC---cccHHHHHHHHHh---ccChh
Confidence 59999999999999887655 37778889999999999887777776553 222 2333333333222 88999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHH--------hhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH-HHHHh
Q 038801 161 AFALVKCMFKNRYFMPFELWGGFLVDI--------CRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA-LEGCC 231 (662)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~ 231 (662)
|..+++++.... |........+... |.+. ++|.+.++ ... ....|+..+.... ...|.
T Consensus 127 A~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~-------~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 127 SVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DAT-------FAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred HHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhh-------hCCCCCcHHHHHHHHHHHH
Confidence 999999999854 6666656555555 5444 45555554 211 1234345544444 77777
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhH
Q 038801 232 YGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL-KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESA 310 (662)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 310 (662)
.. |++++|++++.++.+.+. .+..-...+-.+|.. .++ +++..+++. .+.-+......+.+.|.+.|+.++|
T Consensus 194 ~l-~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 194 YL-KQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HH-hCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 76 999999999999988752 233334445456665 355 666666442 2335666777777777777777777
Q ss_pred HHHHHHHHcCCCCCC--------------------------------------------------------CCC------
Q 038801 311 SRTILLCLGGGNMEQ--------------------------------------------------------SDF------ 328 (662)
Q Consensus 311 ~~~~~~~~~~~~~~~--------------------------------------------------------~~p------ 328 (662)
.+++.++-......+ +.|
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLE 346 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHH
Confidence 776444222211100 000
Q ss_pred ----------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh
Q 038801 329 ----------------------------SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN 380 (662)
Q Consensus 329 ----------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~ 380 (662)
+....-.+.....+.|+.++|.++|+...... ....++.....-++..+.+
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ-GDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC-cccccCHHHHHHHHHHHHh
Confidence 11111222223445677777888877764321 1122222333356667766
Q ss_pred cCC---hHHHHHH----------------------HHHHHHC-CC-CC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038801 381 LGL---SDKAHSI----------------------LDEMNAC-GC-SV--GLGVYVPTLKAYCKEHRTAEATQLVMDISS 431 (662)
Q Consensus 381 ~~~---~~~a~~~----------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (662)
.+. ...+..+ ++..... +. ++ +...|..+..++.. ++.++|...+.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 655 2222222 1112111 11 33 56778888887777 888899998888776
Q ss_pred CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhh
Q 038801 432 SGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 432 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
. .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|..++++..+.. ..+...
T Consensus 505 ~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l 578 (987)
T PRK09782 505 R--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNAL 578 (987)
T ss_pred h--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHH
Confidence 6 566554444455557899999999999997654 4444567777888999999999999999988752 112223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVD 590 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~ 590 (662)
+..+.....+.|++++|...+++..+. .|+...|..+..++.+.|++++|+..+++.. ...|+. ..+.
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---------~l~Pd~~~a~~ 647 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL---------ELEPNNSNYQA 647 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HhCCCCHHHHH
Confidence 333344445569999999999999974 6788899999999999999999999999999 455654 6778
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
.+..++...|++++|++.+++..+..+. |+.+..+...+...|+++.|...++++++++|..+
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 8888999999999999999999887665 55666667777778999999999999999998654
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=4.1e-21 Score=185.22 Aligned_cols=462 Identities=12% Similarity=-0.015 Sum_probs=364.7
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHH
Q 038801 145 VHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACN 224 (662)
Q Consensus 145 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (662)
...|.+-..+.|++++|++.-..+-... |......-++-..+....+.+....--....+ ....-..+|.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r--------~~~q~ae~ys 120 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR--------KNPQGAEAYS 120 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhh--------ccchHHHHHH
Confidence 3456777788999999998777665543 23333234455566666666665544443333 1333456888
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHh-HHHHHHHHHh
Q 038801 225 AALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVF-YSSLISGYVK 303 (662)
Q Consensus 225 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~ 303 (662)
.+-..+-.. |++++|+.+|+.|.+.. +-....|..+..++...|+.+.|.+.|.+..+.+ |+... .+-+....-.
T Consensus 121 n~aN~~ker-g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 121 NLANILKER-GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHh-chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHh
Confidence 888888887 99999999999998864 2356678888899999999999999999988864 76443 3445555666
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL 383 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~ 383 (662)
.|++.+|...|.+.+...+. =...|+.|...+...|+...|++.|++..++.|.- ...|..|...|...+.
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~-----fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f----~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPC-----FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF----LDAYINLGNVYKEARI 267 (966)
T ss_pred hcccchhHHHHHHHHhhCCc-----eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc----hHHHhhHHHHHHHHhc
Confidence 89999999999999887432 34689999999999999999999999986543321 2357788899999999
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFR 462 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 462 (662)
++.|..-|.+..... +....++..+...|...|.+|.|...|++..+. .|+ ...|+.|..++-..|++.+|...|+
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 999999998887754 445678888888999999999999999999986 665 5789999999999999999999999
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038801 463 DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 463 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (662)
+..... +....+.+.|...+...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+.-|++.+. +.
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~ 418 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK 418 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence 998875 45556899999999999999999999999876 3444 45789999999999999999999999996 78
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-
Q 038801 542 PND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF- 618 (662)
Q Consensus 542 p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~- 618 (662)
|+. ..|+.+...|-..|+.+.|++.+.+.+ .+.|.- ..++-|...+-.+|++.+|+.-++.+...+++
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---------~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAI---------QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHH---------hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 987 599999999999999999999999999 567765 77888999999999999999999999887776
Q ss_pred CCHHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 619 VDKWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 619 p~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
||.+-.++.....-.+...=.+..+++.+
T Consensus 490 pdA~cNllh~lq~vcdw~D~d~~~~kl~s 518 (966)
T KOG4626|consen 490 PDAYCNLLHCLQIVCDWTDYDKRMKKLVS 518 (966)
T ss_pred chhhhHHHHHHHHHhcccchHHHHHHHHH
Confidence 66666554444444454443343334333
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4.9e-20 Score=177.84 Aligned_cols=445 Identities=11% Similarity=0.074 Sum_probs=351.3
Q ss_pred HHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 038801 71 LETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLG 150 (662)
Q Consensus 71 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 150 (662)
...+.+...+.|++.+|.+.-.-.-+.+. +..--..++.+....++..+-..+. .... .+..+--.++|..+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~--t~~~~llll~ai~~q~~r~d~s~a~--~~~a--~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP--TNTERLLLLSAIFFQGSRLDKSSAG--SLLA--IRKNPQGAEAYSNLAN 124 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC--Ccccceeeehhhhhcccchhhhhhh--hhhh--hhccchHHHHHHHHHH
Confidence 44556667789999999987665544432 1111222333333333211111111 1111 2223344678999999
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHH
Q 038801 151 SMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGC 230 (662)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 230 (662)
.+-..|++++|+.+++.+++.. |.....+.-+..++...|+.+.|..+|.+..+ +.|+.....+-+..+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alq---------lnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQ---------LNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---------cCcchhhhhcchhHH
Confidence 9999999999999999999854 56666677788888899999999999999987 789988888777777
Q ss_pred hccCCChhHHHHHHHHHHhcCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCChh
Q 038801 231 CYGLQSVSDAEKVIETMSVLGVRPN-ESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ-MVFYSSLISGYVKLGNLE 308 (662)
Q Consensus 231 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 308 (662)
.+..|+.++|...|.+..+. .|. ...|+.|-..+-..|+...|.+.|++.++.+ |+ ...|-.|...|...+.++
T Consensus 194 lka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcch
Confidence 77679999999999998765 343 4567888888889999999999999998854 66 677888999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHH
Q 038801 309 SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388 (662)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 388 (662)
.|...|.+.+..++. ..+.+..|...|-..|+.+-|++.|++...+.|. =...|+.|..++-..|++.+|.
T Consensus 270 ~Avs~Y~rAl~lrpn-----~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~----F~~Ay~NlanALkd~G~V~ea~ 340 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN-----HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN----FPDAYNNLANALKDKGSVTEAV 340 (966)
T ss_pred HHHHHHHHHHhcCCc-----chhhccceEEEEeccccHHHHHHHHHHHHhcCCC----chHHHhHHHHHHHhccchHHHH
Confidence 999999999887644 6778888999999999999999999998764332 1347899999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 389 SILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 389 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
+.|.+.+... +.-....+.|...|...|++++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.+.-
T Consensus 341 ~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 341 DCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9999998864 344578888999999999999999999998875 454 567899999999999999999999999876
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 038801 468 RIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-Q 545 (662)
Q Consensus 468 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~ 545 (662)
. |.-...|+.+...|-..|+.+.|...+.+.+.- .|. ...++.|...|-..|++.+|++-|+..++ ++||. .
T Consensus 418 ~-P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~---nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 418 K-PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI---NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred C-chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc---CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 4 344568889999999999999999999998863 444 45788999999999999999999999997 58886 4
Q ss_pred HHHHHHHHH
Q 038801 546 TYLSLINGY 554 (662)
Q Consensus 546 ~~~~li~~~ 554 (662)
.|..++.+.
T Consensus 492 A~cNllh~l 500 (966)
T KOG4626|consen 492 AYCNLLHCL 500 (966)
T ss_pred hhhHHHHHH
Confidence 665555544
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=4e-20 Score=188.52 Aligned_cols=295 Identities=12% Similarity=0.082 Sum_probs=135.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC
Q 038801 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG 344 (662)
Q Consensus 265 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 344 (662)
.+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..++..++..... ........+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL-TREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHCC
Confidence 3445566666666666666653 233445666666666666666666665555443100 00001234555555555556
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHHcCCHH
Q 038801 345 NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVG----LGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~ 420 (662)
++++|.++|+++.+. .+.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 122 ~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 122 LLDRAEELFLQLVDE----GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 666666666555431 122334444555555555555555555555554432111 112333444445555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 500 (662)
+|...|+++.+.. ..+...+..+...+.+.|++++|.++|+++.+.+......++..+..+|...|+.++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554432 112334444445555555555555555555443211112233444444444444444444444443
Q ss_pred hCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 038801 501 EDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT---AEQYFSVLMMWHEIK 571 (662)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~ 571 (662)
+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.++++|.
T Consensus 277 ~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 277 EE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred Hh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 32 122223344444444444444444444444432 3444444444433332 224444444444444
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=7.1e-17 Score=176.21 Aligned_cols=548 Identities=10% Similarity=-0.046 Sum_probs=335.7
Q ss_pred cchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHH
Q 038801 65 QDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQT 144 (662)
Q Consensus 65 ~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (662)
+.+...+..+.+.+...|+.++|+..+++..+.. |+-..|..++..+ ++...+...++.+ +...+...+ +
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l---~~~~P~n~~--~ 144 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEEL---LAQQKACDA--V 144 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHH---HHhCCCChh--H
Confidence 3346777888899999999999999999998765 4444444444444 5544455544443 334443332 2
Q ss_pred HHHHHHH--------HHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhh------
Q 038801 145 VHTLLGS--------MRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALD------ 210 (662)
Q Consensus 145 ~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------ 210 (662)
+..+... |.+. +.|.+.++ .......|...+....+..+|.+.+++++|++.+.++.+....
T Consensus 145 ~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~ 220 (987)
T PRK09782 145 PTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERR 220 (987)
T ss_pred HHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 2222222 3332 33333333 2221111222223333355555556666666666555442110
Q ss_pred -------h----------hcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCC-CCcccHHHHHHHHH-----
Q 038801 211 -------E----------NLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVR-PNESSFGFLAYLYA----- 267 (662)
Q Consensus 211 -------~----------~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~----- 267 (662)
. .....+.+...+..+...+.+. |+.++|.++++++...-.. |...++--++.-+.
T Consensus 221 ~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~-G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~ 299 (987)
T PRK09782 221 QWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYR-GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQ 299 (987)
T ss_pred HHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHC-CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhh
Confidence 0 0001223455555666666665 6666666666665433211 33333332221111
Q ss_pred -------------------------HcCCHHHHHHHHHH--------HHhcCC--------------------CCcHHhH
Q 038801 268 -------------------------LKGLQEKIVELESL--------MNEFGF--------------------SSQMVFY 294 (662)
Q Consensus 268 -------------------------~~g~~~~a~~~~~~--------~~~~g~--------------------~~~~~~~ 294 (662)
+.+.++.++++... +.-.+. +-+....
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l 379 (987)
T PRK09782 300 ALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRL 379 (987)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHH
Confidence 11111111111000 000000 0011111
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCC---HHHHHHH-------------------
Q 038801 295 SSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGN---VKGLANL------------------- 352 (662)
Q Consensus 295 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~------------------- 352 (662)
--+.-.....|+.++|.++|.+...... ...++...-+-++..|.+.+. ..++..+
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQG--DARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCc--ccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 1122223456777888888777777421 222345555677788877766 3333333
Q ss_pred ---HHHHHHhCCCCc-cc--ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 038801 353 ---IIEAQKLEPSGI-VV--DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV 426 (662)
Q Consensus 353 ---~~~m~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (662)
++..... -+. ++ +...+..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|
T Consensus 458 ~~~~~~~~~a--l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 458 ADNCPAIVRL--LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhHHHHHHh--cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2222211 112 22 34455666666655 88999999888877653 66554444555667899999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 038801 427 MDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVE 506 (662)
Q Consensus 427 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 506 (662)
+++... .|+...+..+..++.+.|+.++|...+++..+.. +.....+..+...+...|++++|...+++..+. .
T Consensus 533 rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~ 606 (987)
T PRK09782 533 QKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---A 606 (987)
T ss_pred HHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---C
Confidence 998765 4555566777888999999999999999998875 333333444444555669999999999999874 3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 507 VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
|+...|..+..++.+.|++++|...|++..+. .|+. ..++.+..++...|++++|+..+++.. ...|+
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL---------~l~P~ 675 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAH---------KGLPD 675 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------HhCCC
Confidence 45678999999999999999999999999985 5654 688888889999999999999999999 34564
Q ss_pred -HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCC-CHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 586 -HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFV-DKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 586 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
...+..+..++...|++++|...+++..+..+.. ++............+++.+.+.+++...++|.
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 4788899999999999999999999998777653 34444455556667788888888887777664
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=6.3e-20 Score=187.13 Aligned_cols=303 Identities=14% Similarity=0.135 Sum_probs=247.1
Q ss_pred HhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHhcCC
Q 038801 230 CCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ---MVFYSSLISGYVKLGN 306 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 306 (662)
+... |++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|+
T Consensus 45 ~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLN-EQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhc-CChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4455 99999999999999864 33455788888899999999999999999988643222 3568889999999999
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChH
Q 038801 307 LESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSD 385 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~ 385 (662)
+++|..+|.++++... .+..+++.++..+.+.|++++|.+.++.+.+..+..... ....+..+...+...|+++
T Consensus 123 ~~~A~~~~~~~l~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 123 LDRAEELFLQLVDEGD-----FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred HHHHHHHHHHHHcCCc-----chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999988887532 367899999999999999999999999987632211110 0123445777888999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
+|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998864 445678888999999999999999999999976433234678899999999999999999999998
Q ss_pred HcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCC
Q 038801 466 EARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK---AGRLEDAKRTLRRMIFLQFEP 542 (662)
Q Consensus 466 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p 542 (662)
+.. |+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 874 55567788999999999999999999998874 5777788888887775 558999999999999988887
Q ss_pred CHH
Q 038801 543 NDQ 545 (662)
Q Consensus 543 ~~~ 545 (662)
+..
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 775
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.9e-16 Score=169.99 Aligned_cols=400 Identities=10% Similarity=-0.032 Sum_probs=272.2
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038801 183 FLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFL 262 (662)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 262 (662)
.....+.+.|++++|++.|++..+ ..|+...|..+-.+|... |++++|++.++...+.. +.+...+..+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~---------~~p~~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~-p~~~~a~~~~ 200 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIE---------CKPDPVYYSNRAACHNAL-GDWEKVVEDTTAALELD-PDYSKALNRR 200 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---------cCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 345566789999999999999976 577877888888888886 99999999999988753 2245577778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCC------------------
Q 038801 263 AYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME------------------ 324 (662)
Q Consensus 263 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------------------ 324 (662)
..++...|++++|..-+..+...+-..+.. ...++..+... .+.......++..+..
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 889999999999998887665443111111 11111111110 1111111111111000
Q ss_pred ---------CCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHhCCCCcccc-cchHHHHHHHHHhcCChHHHHHH
Q 038801 325 ---------QSDFSK-ETYCEVVKG---FLQNGNVKGLANLIIEAQKLEPSGIVVD-RSVGFGIISACVNLGLSDKAHSI 390 (662)
Q Consensus 325 ---------~~~p~~-~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 390 (662)
...+.. ..+..+... ....+++++|.+.|++..... ...|+ ...+..+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~--~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG--KLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 000000 001111100 122467888888888876521 12232 34455667777788999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 038801 391 LDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIY 470 (662)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 470 (662)
+++.+... +.+...|..+...+...|++++|...|++..+.. ..+...|..+...+...|++++|...|++..+.. |
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 99888764 3346678888888888999999999999887763 2256788888888899999999999999888775 5
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H----
Q 038801 471 DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-Q---- 545 (662)
Q Consensus 471 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~---- 545 (662)
.+...+..+...+.+.|++++|+..+++..+..+. +...|+.+...+...|++++|.+.|++..+. .|+. .
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~ 506 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE--APDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMN 506 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCcccccccc
Confidence 55667777888888899999999999988774322 3457888888889999999999999988864 3321 1
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 546 ---TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 546 ---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
.++.....+...|++++|.+++++.. . +.|+. ..+..+...+.+.|++++|++++++..+..
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl-------~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKAL-------I--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------h--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 12222223334688999999998887 2 34544 567888888999999999999998886553
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=2.2e-16 Score=161.07 Aligned_cols=192 Identities=14% Similarity=0.141 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHHh----------
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI-YDLKGSYLTIMTGLME---------- 485 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~---------- 485 (662)
+...+|...+....... .-+...+..+...+.+..++..|.+-|..+.+.-. .+|..+...|...|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 34444444444444321 22333343344455555555555554444443221 2233333333333322
Q ss_pred --cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038801 486 --NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563 (662)
Q Consensus 486 --~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 563 (662)
.+..+.|+++|.++.+. -.-|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+..+|...|+|..|
T Consensus 623 k~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 12345555555555543 122445555555566666666666666666665432 1234555556666666666666
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 564 LMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 564 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+++|+.... +..-.-+..+...|.+++.+.|++.+|.+.+.......+.
T Consensus 700 IqmYe~~lk------kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 700 IQMYENCLK------KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHH------HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 666665552 2222334455556666666666666666666555444443
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=8.2e-17 Score=172.06 Aligned_cols=408 Identities=8% Similarity=-0.051 Sum_probs=301.5
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 038801 224 NAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK 303 (662)
Q Consensus 224 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 303 (662)
..++..+.++ |++++|+.+++........+ ...+..++.++...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 46 ~~~~~~~~~~-g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 46 ILFAIACLRK-DETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHhc-CCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3455566676 99999999999998765333 3345555567778999999999999999874 3446778889999999
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL 383 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~ 383 (662)
.|+.++|...|.+.+...+. +...+..+...+...|++++|...++.+....+ +.......+..+...|+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-----~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-----~~~~a~~~~~~l~~~g~ 192 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-----NSQIFALHLRTLVLMDKELQAISLARTQAQEVP-----PRGDMIATCLSFLNKSR 192 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHcCC
Confidence 99999999999999886433 677899999999999999999999998865322 22222222344788999
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH----HHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS----AFS 459 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~ 459 (662)
+++|...++.+.+..-.++...+..+..++.+.|++++|...|++..+... .+...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 999999999988875334555666677889999999999999999998742 256778889999999999986 899
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038801 460 LFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539 (662)
Q Consensus 460 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (662)
.|++..+.. |.+...+..+...+...|++++|...+++..+..+- +...+..+..+|.+.|++++|.+.|+++...
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~--~~~a~~~La~~l~~~G~~~eA~~~l~~al~~- 347 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD--LPYVRAMYARALRQVGQYTAASDEFVQLARE- 347 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999999875 566778999999999999999999999999875332 3456777889999999999999999999975
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH--hCC
Q 038801 540 FEPNDQ-TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ--EMK 616 (662)
Q Consensus 540 ~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~~~ 616 (662)
.|+.. .+..+..++...|++++|+..|++..+..+.... .+-......+-.++...+..++......++. +.+
T Consensus 348 -~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~---~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 423 (656)
T PRK15174 348 -KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP---QSFEEGLLALDGQISAVNLPPERLDWAWEVAGRQSG 423 (656)
T ss_pred -CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch---hhHHHHHHHHHHHHHhcCCccchhhHHHHHhccccc
Confidence 56654 3444567788999999999999999854332110 1111333444445555566655545555552 346
Q ss_pred CCCCHHhHHHHHHH---------HhhhhhhhHHHHHHHHhhHHHHH
Q 038801 617 VFVDKWKYKQAFME---------NHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 617 ~~p~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
+.++.|.....+-. ....-+.|++...+..+++..+.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (656)
T PRK15174 424 IERDEWERRAKWGYLADNFLLDWLECRGEQADEPMYRLADISHVEQ 469 (656)
T ss_pred CChHHHHHHHHhhHHHHHHHHHHHHhcccchhhHHHHHhhhhhHHH
Confidence 67776655421111 12334556666666666544433
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=2.5e-16 Score=146.06 Aligned_cols=375 Identities=13% Similarity=0.070 Sum_probs=265.6
Q ss_pred CCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHH
Q 038801 216 MKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYS 295 (662)
Q Consensus 216 ~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 295 (662)
.+....+|.+||.++|+- -..+.|.++|++-.....+.+..+||.+|.+-.-. ...++..+|....+.||..|+|
T Consensus 203 ~PKT~et~s~mI~Gl~K~-~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKF-SSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred cCCCchhHHHHHHHHHHH-HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHH
Confidence 455667999999999998 99999999999998888899999999998765433 2378899999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH-HhCCCCcccc----cc
Q 038801 296 SLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKG-LANLIIEAQ-KLEPSGIVVD----RS 369 (662)
Q Consensus 296 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~-~~~~~~~~~~----~~ 369 (662)
+++.+..+.|+++.|...+.+.+.+++..|+.|...+|..+|..+++.++..+ |..++.++. .+..+.++|- ..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999999999999888888888888999999999999999999888754 444444432 2333444443 33
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACG----CSVG---LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYD 442 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 442 (662)
.|...++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 44568899999999999999887765432 2233 3467778888999999999999999998887788899999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh---hHHHHHHHH
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH---DWNSIIHAF 519 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~li~~~ 519 (662)
.++++..-.|.++-.-++|.+++..|.. ++..+. ++++..+..+ ...|+.. -+.....-+
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght-----~r~~l~-----------eeil~~L~~~-k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHT-----FRSDLR-----------EEILMLLARD-KLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhh-----hhHHHH-----------HHHHHHHhcC-CCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999998853 332222 2223333332 2222211 222222222
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHcc
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKG 599 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 599 (662)
+ ..-.+.....-.+|.+. .......+.+.-.+.+.|+.++|-+++.-+.+.-. +-...|......-++++-.+.
T Consensus 501 a-ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~---~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 501 A-ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN---KIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred H-HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC---cCCCCcchhhHHHHHHHHHhc
Confidence 1 11122223334455543 33445566666667788888888888887752100 111123333344556666777
Q ss_pred CchHHHHHHHHHHHhCCCC
Q 038801 600 GFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 600 g~~~~A~~~~~~m~~~~~~ 618 (662)
.+...|..+++-|...+..
T Consensus 575 ~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CCHHHHHHHHHHHHHcCch
Confidence 8888888888888877654
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1.8e-16 Score=170.27 Aligned_cols=410 Identities=10% Similarity=-0.013 Sum_probs=289.8
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 038801 224 NAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK 303 (662)
Q Consensus 224 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 303 (662)
...-..+.+. |++++|+..|++..+. .|+...|..+..+|.+.|++++|.+.++...+.+ +.+..++..+..+|..
T Consensus 131 k~~G~~~~~~-~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 131 KEKGNKAYRN-KDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3444556776 9999999999998764 6788888888899999999999999999998864 3347788889999999
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------HH-hC---------
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEA-------------QK-LE--------- 360 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-------------~~-~~--------- 360 (662)
.|++++|..-|........ . +......++..+........+...++.- .. ..
T Consensus 207 lg~~~eA~~~~~~~~~~~~---~--~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDG---F--RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred cCCHHHHHHHHHHHHHhCC---C--ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 9999999987655443311 1 1111111111111110011111111100 00 00
Q ss_pred -CCCccccc-chHHHHHHH---HHhcCChHHHHHHHHHHHHCC-C-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 038801 361 -PSGIVVDR-SVGFGIISA---CVNLGLSDKAHSILDEMNACG-C-SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG 433 (662)
Q Consensus 361 -~~~~~~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 433 (662)
.....++. ..+..+... ....+++++|.+.|+...+.+ . +.....++.+...+...|++++|...|++..+.
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 00000000 001111100 122468899999999999865 2 334567888889999999999999999999876
Q ss_pred CCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhH
Q 038801 434 LQLD-VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDW 512 (662)
Q Consensus 434 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 512 (662)
.|+ ...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. ..+...+
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~ 436 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSH 436 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHH
Confidence 454 5688888999999999999999999998875 5667789999999999999999999999998742 2245678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVD 590 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~ 590 (662)
..+..++.+.|++++|+..|++..+. .|+ ...|+.+...+...|++++|++.|++..+..+.. .+...+. ..++
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~--~~~~~~~~~l~~ 512 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET--KPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc--ccccccHHHHHH
Confidence 88899999999999999999999874 554 5789999999999999999999999998322110 0111111 1122
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVFVD-KWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
..+..+...|++++|.+++++..+.++... .+..+...+...|+++.|...+++++++.+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 222233457999999999999887765433 4555566667789999999999999888763
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=3.9e-17 Score=174.51 Aligned_cols=337 Identities=11% Similarity=-0.024 Sum_probs=268.7
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHH
Q 038801 256 ESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335 (662)
Q Consensus 256 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 335 (662)
..-...++..+.+.|++++|..+++....... -+...+..++.+....|++++|...|.+.+...+. +...|..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-----~~~a~~~ 115 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-----QPEDVLL 115 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-----ChHHHHH
Confidence 33455677888899999999999999988753 33556666667788899999999999998887543 6678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK 415 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (662)
+...+.+.|++++|.+.++++.++.+. +...+..+...+...|++++|...++.+.... +.+...+..+ ..+..
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~P~----~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~ 189 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAFSG----NSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLN 189 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHH
Confidence 999999999999999999998763322 34456678889999999999999999887764 2333444333 34788
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH----
Q 038801 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL---- 491 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---- 491 (662)
.|++++|...++.+.+....++...+..+..++...|++++|+..|+++.+.. +.+...+..+...+...|+.++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 99999999999998876433445555666788999999999999999999875 5666788889999999999985
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
|...+++..+..+ .+...+..+...+.+.|++++|...+++..+. .|+. ..+..+..++...|++++|+..++++
T Consensus 269 A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 269 AAEHWRHALQFNS--DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7999999887422 24668899999999999999999999999975 5654 57778889999999999999999999
Q ss_pred HHhhcccCCCCCcccHH-HHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 571 KRKISTDGQKGIKFEHN-LVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
. ...|+.. .+..+..++...|+.++|...+++..+..+.
T Consensus 345 l---------~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 345 A---------REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred H---------HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 8 2345543 3444567788999999999999998776554
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.1e-15 Score=161.35 Aligned_cols=432 Identities=11% Similarity=0.002 Sum_probs=286.0
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCCcc-cHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH-
Q 038801 149 LGSMRNANTAAPAFALVKCMFKNRYFMPFE-LWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA- 226 (662)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 226 (662)
+-...+.|+++.|+..|++..+.. |... ... -++.++...|+.++|+..+++. ..|+...+..+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka-----------~~p~n~~~~~ll 106 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERY-----------QSSMNISSRGLA 106 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHh-----------ccCCCCCHHHHH
Confidence 334567777778888777777643 3321 112 5556666677788888777776 23322222222
Q ss_pred --HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc
Q 038801 227 --LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKL 304 (662)
Q Consensus 227 --l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 304 (662)
...+... |++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+.... |+...+..++..+...
T Consensus 107 alA~ly~~~-gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNE-KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhc
Confidence 3345554 78888888888877653 2234445555667777777777877777776653 5555554444444445
Q ss_pred CChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchH------HHHHHHH
Q 038801 305 GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG------FGIISAC 378 (662)
Q Consensus 305 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~------~~ll~~~ 378 (662)
++..+|++.+.++++..+. +...+..++.++.+.|-...|+++..+-. .-+.+...-. ..+++.-
T Consensus 183 ~~~~~AL~~~ekll~~~P~-----n~e~~~~~~~~l~~~~~~~~a~~l~~~~p----~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPT-----SEEVLKNHLEILQRNRIVEPALRLAKENP----NLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred chHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCcHHHHHHHHhCc----cccCHHHHHHHHHHHHHHHHhhc
Confidence 5555577777777776433 56667777777777777777776665421 1122211111 0011110
Q ss_pred -----HhcCC---hHHHHHHHHHHHHC-CCCCCh-h----hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038801 379 -----VNLGL---SDKAHSILDEMNAC-GCSVGL-G----VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDAL 444 (662)
Q Consensus 379 -----~~~~~---~~~a~~~~~~m~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 444 (662)
....+ .+.|..-++.+... +-.|.. . ..--.+-++.+.|++.++++.|+.|...|......+-..+
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 01112 23444555555542 112321 1 2223456778889999999999999988766556677888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcC-----CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------------Ccc
Q 038801 445 IEASITSQDFQSAFSLFRDMREAR-----IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPR------------VEV 507 (662)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------~~p 507 (662)
.++|...+++++|+.+|+++.... .+++......|.-++...+++++|..+++++.+..+ ..|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 999999999999999999987643 123333357888999999999999999999887422 122
Q ss_pred c-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 508 K-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 508 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
| ...+..++..+...|++.+|++.++++... .| |......+...+...|.+.+|.+.++.+. .+.|+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---------~l~P~ 482 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVE---------SLAPR 482 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---------hhCCc
Confidence 2 223455677788999999999999999875 45 66788899999999999999999998777 45665
Q ss_pred H-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 586 H-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 ~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
. .+....+.+....|++++|..+.+++.+..+.
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 4 66677888888999999999999999777665
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=5e-16 Score=169.79 Aligned_cols=426 Identities=9% Similarity=-0.031 Sum_probs=249.1
Q ss_pred CCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCC
Q 038801 138 KLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMK 217 (662)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (662)
...+.....-.+.+....|+.++|+.++...... .|........+..++.+.|++++|.++|++..+. .+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P 80 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EP 80 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 3455556666777777777777777777777652 2334434556666777777777777777777652 12
Q ss_pred ccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHH
Q 038801 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSL 297 (662)
Q Consensus 218 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (662)
.+...+..+...+... |++++|+..+++..+.. +.+.. +..+..++...|+.++|...++.+.+.. +.+...+..+
T Consensus 81 ~~~~a~~~la~~l~~~-g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~l 156 (765)
T PRK10049 81 QNDDYQRGLILTLADA-GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEY 156 (765)
T ss_pred CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 2344455555666665 77777777777776552 22333 5566666777777777777777777653 2234455556
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSK------ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG 371 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 371 (662)
..++...|..++|++.+..... .|+. .....++......+.
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~-------~p~~~~~l~~~~~~~~~r~~~~~~~-------------------------- 203 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANL-------TPAEKRDLEADAAAELVRLSFMPTR-------------------------- 203 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHhhccccc--------------------------
Confidence 6666677777777766433222 1110 001111111110000
Q ss_pred HHHHHHHHhcCCh---HHHHHHHHHHHHC-CCCCChh-hH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CChhhH
Q 038801 372 FGIISACVNLGLS---DKAHSILDEMNAC-GCSVGLG-VY----VPTLKAYCKEHRTAEATQLVMDISSSGLQ-LDVGNY 441 (662)
Q Consensus 372 ~~ll~~~~~~~~~---~~a~~~~~~m~~~-~~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~ 441 (662)
...+++ ++|.+.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.. |+. ..
T Consensus 204 -------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~ 275 (765)
T PRK10049 204 -------SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQ 275 (765)
T ss_pred -------ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HH
Confidence 111122 4556666666543 1122111 11 11122344556777777777776665421 221 11
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----------Cccc
Q 038801 442 DALIEASITSQDFQSAFSLFRDMREARIYD---LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPR----------VEVK 508 (662)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~ 508 (662)
..+..+|...|++++|+.+|+++.+..... .......+..++...|++++|..+++++....+ ..|+
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 123556667777777777777665543111 112344455566677777777777776665421 1122
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc
Q 038801 509 ---THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF 584 (662)
Q Consensus 509 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 584 (662)
...+..+...+...|+.++|+++++++... .| +...+..+...+...|++++|++.++++. .+.|
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al---------~l~P 424 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAE---------VLEP 424 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------hhCC
Confidence 224456677788889999999999888875 45 44677888888888899999999998888 4556
Q ss_pred cH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038801 585 EH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM 629 (662)
Q Consensus 585 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~ 629 (662)
+. ..+......+.+.|++++|..+++++.+..+.-.....+-...
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 64 5566666678888899999999988877665533333333333
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.5e-15 Score=155.22 Aligned_cols=545 Identities=10% Similarity=-0.014 Sum_probs=387.8
Q ss_pred HHHHHH--HhhCChhHHHHHHHHhhhCCC--CCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHH
Q 038801 73 TNLHKS--LLTNNTDEAWKSFKSLTANSL--FPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTL 148 (662)
Q Consensus 73 ~~l~~~--~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (662)
.+..+. ...+++..|+.+|.......+ .||+ .-.+-.+|.+.+..+.+..+|..+ ++..| -++.++..|
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ra---lqLdp--~~v~alv~L 239 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERA---LQLDP--TCVSALVAL 239 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHH---HhcCh--hhHHHHHHH
Confidence 344444 347899999999999765443 3443 233346777888877777777655 45555 344444444
Q ss_pred HHHHH---hcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHH
Q 038801 149 LGSMR---NANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNA 225 (662)
Q Consensus 149 l~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (662)
...-. ....+..++.++...-.. .+.+....+.|...|.-.|++..+..+...+..... .-.--...|-.
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~ 312 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQ 312 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHH
Confidence 33333 333456677777666553 356666778888888889999999999888876310 00112235777
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCCCCCcccH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 038801 226 ALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSF--GFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK 303 (662)
Q Consensus 226 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 303 (662)
+-++|... |++++|...|.+-.+. .+|.+++ .-+...+...|+++.+...|+...+.. +-+..+...|...|..
T Consensus 313 ~gRs~Ha~-Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 313 LGRSYHAQ-GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAH 388 (1018)
T ss_pred HHHHHHhh-ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHh
Confidence 88888887 9999999999887654 4555444 346678889999999999999998874 4456777778888877
Q ss_pred cC----ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCcccccchHHHHHHHH
Q 038801 304 LG----NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQ-KLEPSGIVVDRSVGFGIISAC 378 (662)
Q Consensus 304 ~g----~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~~~~ll~~~ 378 (662)
.+ ..+.|..++.+.++.... |...|-.+...+-...-+.. +..|.... .+...+..+.....|.+....
T Consensus 389 ~~~~~~~~d~a~~~l~K~~~~~~~-----d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 389 SAKKQEKRDKASNVLGKVLEQTPV-----DSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 75 567777777777766433 88888888877766555544 76666554 222245556677899999999
Q ss_pred HhcCChHHHHHHHHHHHHC---CCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNAC---GCSVGL------GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVG-NYDALIEAS 448 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~ 448 (662)
...|+++.|...|...... ...++. .+--.+...+-..++.+.|.+.|..+.+. .|.-+ .|-.+....
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHH
Confidence 9999999999999988765 122333 22333566677788999999999999987 56544 444444333
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh-------
Q 038801 449 ITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK------- 521 (662)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~------- 521 (662)
-..+...+|...+++....+ ..+...+..+...+.+...+..|.+-|..+..+....+|.++.-+|.+.|.+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 34578889999999888765 3444466666668888888888888787777765555677666666665542
Q ss_pred -----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHH
Q 038801 522 -----AGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL 596 (662)
Q Consensus 522 -----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~ 596 (662)
.+..++|+++|.+.++.. .-|...-|-+.-+++..|++.+|..+|.++++ ... -...+|--+..+|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE-------a~~-~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVRE-------ATS-DFEDVWLNLAHCY 690 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHH-------HHh-hCCceeeeHHHHH
Confidence 356899999999999753 33667888888889999999999999999994 222 2334666788889
Q ss_pred HccCchHHHHHHHHHHHhCCC---CCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 597 VKGGFFDAVMQVVEKSQEMKV---FVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 597 ~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
..+|++-.|+++|+.+.+.-. .+++..++..+....|.+.++......++.+-|.+-
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~ 750 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT 750 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc
Confidence 999999999999999876655 466888888888888999999999888888877665
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=1.1e-16 Score=174.93 Aligned_cols=404 Identities=12% Similarity=0.060 Sum_probs=297.7
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 038801 224 NAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK 303 (662)
Q Consensus 224 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 303 (662)
.-.+...... |+.++|++++.+..... +.+...+..+...+...|++++|..+++...+.. +.+...+..+..++..
T Consensus 19 ~d~~~ia~~~-g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWA-GQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444555566 99999999999997522 3444468888899999999999999999988864 3456777888899999
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL 383 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~ 383 (662)
.|+.++|...+.+.+...+. +.. +..+..++...|+.++|+..++++.+..|. +...+..+..++...+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~-----~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~----~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD-----KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ----TQQYPTEYVQALRNNRL 165 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-----CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCC
Confidence 99999999999888887433 566 888999999999999999999999764332 33444557777888899
Q ss_pred hHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHH-----HcCCH---HHHHHHHHHHHhC-CCCCChh-hH----HH
Q 038801 384 SDKAHSILDEMNACGCSVGL------GVYVPTLKAYC-----KEHRT---AEATQLVMDISSS-GLQLDVG-NY----DA 443 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~----~~ 443 (662)
.+.|.+.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999998876654 2221 11222222222 22334 7888899988864 2233321 11 11
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--chhhHHHHHHHHH
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIY-DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV--KTHDWNSIIHAFC 520 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~ 520 (662)
.+.++...|++++|+..|+++.+.+.+ |+ .....+...+...|++++|+.+|+++.+..+..+ ....+..+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 134556779999999999999987632 22 1233357789999999999999999876533221 1244666777889
Q ss_pred hcCCHHHHHHHHHHHHhCC-----------CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-c
Q 038801 521 KAGRLEDAKRTLRRMIFLQ-----------FEPND---QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-E 585 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~~-----------~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~ 585 (662)
..|++++|.++++.+.+.. -.|+. ..+..+...+...|+.++|+++++++.. ..| +
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---------~~P~n 392 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---------NAPGN 392 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCC
Confidence 9999999999999998752 11232 3456677788899999999999999992 334 3
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
...+..+...+...|++++|++.+++..+..+. +.............|+++.|+..++++++.+|.++
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 478888889999999999999999999877654 33444445556667999999999999999998876
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=3.9e-14 Score=151.79 Aligned_cols=441 Identities=11% Similarity=0.005 Sum_probs=287.6
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
.-...+.|+++.|++.|++..+..+.-.+..+ .++..+...|+...+...++... .+.......+..+...+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHHH
Confidence 33456789999999999999876643222334 88888888898888877776652 3333444455555678889
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccC
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGL 234 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 234 (662)
.|++++|+++++++.+.. |.+......+...+...++.++|++.++++.. ..|+...+-.++..+...
T Consensus 115 ~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---------~dp~~~~~l~layL~~~~- 182 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAE---------RDPTVQNYMTLSYLNRAT- 182 (822)
T ss_pred cCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---------cCcchHHHHHHHHHHHhc-
Confidence 999999999999999864 55566666778889999999999999999965 577766664444444333
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHh------HHHHHHHH---H--h
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVF------YSSLISGY---V--K 303 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~------~~~li~~~---~--~ 303 (662)
++..+|++.++++.+.. +-+...+..++.++.+.|-...|.++...-.+. +.+...- ...+++.- . .
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 66666999999998874 334556677888999999988888776543211 1111100 00111100 0 0
Q ss_pred cC---ChhhHHHHHHHHHcCCCCCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHH
Q 038801 304 LG---NLESASRTILLCLGGGNMEQSDFS-K----ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGII 375 (662)
Q Consensus 304 ~g---~~~~A~~~~~~~~~~~~~~~~~p~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll 375 (662)
.. -.|.|+.-+..++... +..|. . ...--.+.++...|++.++++.|+.+.. .+.+....+-..+.
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~---~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~---~~~~~P~y~~~a~a 334 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRW---GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA---EGYKMPDYARRWAA 334 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhc---cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh---cCCCCCHHHHHHHH
Confidence 11 2234444444445432 11121 1 1223445677778888888888888765 55443444556678
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CC--C
Q 038801 376 SACVNLGLSDKAHSILDEMNACG-----CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGL-----------QL--D 437 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~~--~ 437 (662)
++|...+.+++|..+|+.+.... ..++......|.-+|...+++++|..+++.+.+.-. .| |
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 88888888888888888876542 123344456777788888888888888888876311 11 1
Q ss_pred h-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHH
Q 038801 438 V-GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSI 515 (662)
Q Consensus 438 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 515 (662)
- ..+..++..+...|+..+|++.++++.... |-+......+...+...|.+.+|+..++..... .| +..+....
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l---~P~~~~~~~~~ 490 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL---APRSLILERAQ 490 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---CCccHHHHHHH
Confidence 1 123445566777788888888888876654 666667777777777777777777777655543 23 24455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTY 547 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 547 (662)
+.++...|++.+|..+.+...+. .|+....
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~ 520 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISR--SPEDIPS 520 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--CCCchhH
Confidence 67777777777777777777763 5655433
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.3e-14 Score=134.79 Aligned_cols=322 Identities=16% Similarity=0.156 Sum_probs=215.4
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH--cCCHHHH-HHHHHHHHhcCCCCcHHhHHHH
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL--KGLQEKI-VELESLMNEFGFSSQMVFYSSL 297 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~--~g~~~~a-~~~~~~~~~~g~~~~~~~~~~l 297 (662)
.+=|.++.... + |.+..+.-+|+.|...|++.+...--.|++..+- ..++--| .+-|-.|.+.| +.+..+|
T Consensus 117 ~~E~nL~kmIS-~-~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLKMIS-S-REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred cchhHHHHHHh-h-cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 35566666554 3 8999999999999999988887766666654442 2332222 23344454444 2222232
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~ 377 (662)
+.|++.+ ++++.+.. +..+|..||.++|+--..+.|.++|++... ...+.+..+||.+|.+
T Consensus 191 -----K~G~vAd---L~~E~~PK--------T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~---~k~kv~~~aFN~lI~~ 251 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPK--------TDETVSIMIAGLCKFSSLERARELYKEHRA---AKGKVYREAFNGLIGA 251 (625)
T ss_pred -----ccccHHH---HHHhhcCC--------CchhHHHHHHHHHHHHhHHHHHHHHHHHHH---hhheeeHHhhhhhhhH
Confidence 3444433 45666665 677888888888888888888888888766 6667777788887766
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH----HHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA----TQLVMDISSSGLQLDVGNYDALIEASITSQD 453 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 453 (662)
-.- ....++..+|....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++
T Consensus 252 ~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~d 327 (625)
T KOG4422|consen 252 SSY----SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESD 327 (625)
T ss_pred HHh----hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCC
Confidence 433 22367788888888888888888888888888876654 4567778888888888888888888888776
Q ss_pred HHH-HHHHHHHHHH----cCC----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---Cccc---hhhHHHHHHH
Q 038801 454 FQS-AFSLFRDMRE----ARI----YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPR---VEVK---THDWNSIIHA 518 (662)
Q Consensus 454 ~~~-A~~~~~~m~~----~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~p~---~~~~~~li~~ 518 (662)
..+ |..++.++.. +.. +.+...|..-+..|....+.+.|.++..-+....+ +.|+ ..-|..+...
T Consensus 328 p~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 328 PQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDL 407 (625)
T ss_pred chhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHH
Confidence 644 3344444432 222 22334456666777777777777776655543211 1122 2235566667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.|+....+.-...|+.|.-.-+.|+..+...++++....|.++-.-++|.+++
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~ 460 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK 460 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH
Confidence 77777788888888888877677777777777787777777777777777766
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=4.3e-14 Score=132.24 Aligned_cols=478 Identities=12% Similarity=0.063 Sum_probs=313.7
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
++..++..|...|.......+|+..++-++++..+|..-....-+...+.+.+.+.+|++++.-... ..|+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmald---------qvps 269 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALD---------QVPS 269 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHh---------hccc
Confidence 5666777788888888899999999999999988888777666778888899999999999887755 2333
Q ss_pred H------HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----
Q 038801 220 I------YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSS---- 289 (662)
Q Consensus 220 ~------~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~---- 289 (662)
+ ...|.+--.+.+. |+++.|+.-|+...+. .|+-.+--.|+-++.-.|+-++..+.|..|......+
T Consensus 270 ink~~rikil~nigvtfiq~-gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 270 INKDMRIKILNNIGVTFIQA-GQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred cchhhHHHHHhhcCeeEEec-ccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc
Confidence 2 2334444456776 9999999999998764 5777665556656667899999999999998754333
Q ss_pred --------cHHhHHHHH-----HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHH---HH----------H--------H
Q 038801 290 --------QMVFYSSLI-----SGYVKLGNLESASRTILLCLGGGNMEQSDFSKE---TY----------C--------E 335 (662)
Q Consensus 290 --------~~~~~~~li-----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~---~~----------~--------~ 335 (662)
+....+.-| .-+-+..+. .|++.+-...+- ..+-+.|+-. -| . .
T Consensus 347 yi~~~ddp~~~ll~eai~nd~lk~~ek~~ka-~aek~i~ta~ki-iapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 347 YIKEKDDPDDNLLNEAIKNDHLKNMEKENKA-DAEKAIITAAKI-IAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred ccCCcCCcchHHHHHHHhhHHHHHHHHhhhh-hHHHHHHHHHHH-hccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 322222222 222222111 122111111110 0011222211 01 0 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACV--NLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY 413 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (662)
-...+.++|+++.|++++.-..+ ..-+.-+..-+.|...+. --.++..|.+.-+..+... .-+......-.+..
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIA 500 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCcee
Confidence 12357799999999999887654 211111111222222222 2346777777766665443 22333322223344
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH---HHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 038801 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALI---EASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490 (662)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 490 (662)
...|++++|.+.|.+.... |..+-.+|. -.+-..|++++|++.|-++-.- +..+.....-+...|-...+..
T Consensus 501 f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred eecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHH
Confidence 5679999999999999864 444333332 3456789999999999876543 2344566777778888889999
Q ss_pred HHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 491 LMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 491 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
.|++++.+... -+.-|+.+...|...|-+.|+-..|.+.+-+--.- +.-|..+..-|...|....-+++++.+|++.
T Consensus 576 qaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999988765 34556788999999999999999998877654432 3346788888999999999999999999988
Q ss_pred HHhhcccCCCCCcccHHHHHHHHHHHH-ccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhh--hhhHHHHHHHHh
Q 038801 571 KRKISTDGQKGIKFEHNLVDAFLYALV-KGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKL--KVAKLRKRNFKK 647 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~--~~a~~~~~~~~~ 647 (662)
. -++|+..-|..++..|. +.|++..|+++++.....= |.....+.-..+..|++ ..+++..+++.+
T Consensus 653 a---------liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf--pedldclkflvri~~dlgl~d~key~~klek 721 (840)
T KOG2003|consen 653 A---------LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF--PEDLDCLKFLVRIAGDLGLKDAKEYADKLEK 721 (840)
T ss_pred H---------hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--ccchHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 8 68999999999988776 6999999999999986543 33333333333333443 345555555555
Q ss_pred hHHHHHH
Q 038801 648 MEALIAF 654 (662)
Q Consensus 648 l~p~~~~ 654 (662)
.|..+.+
T Consensus 722 ~eki~ei 728 (840)
T KOG2003|consen 722 AEKIKEI 728 (840)
T ss_pred HHHHHHH
Confidence 5544433
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=3.7e-12 Score=124.89 Aligned_cols=470 Identities=13% Similarity=0.037 Sum_probs=358.5
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHH
Q 038801 150 GSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEG 229 (662)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (662)
++.......+.|.-++.+..+. .|.+ .-|..++++...++.|.+++.+..+. ++-+...|-+.-..
T Consensus 384 KaAVelE~~~darilL~rAvec--cp~s----~dLwlAlarLetYenAkkvLNkaRe~--------iptd~~IWitaa~L 449 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC--CPQS----MDLWLALARLETYENAKKVLNKAREI--------IPTDREIWITAAKL 449 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh--ccch----HHHHHHHHHHHHHHHHHHHHHHHHhh--------CCCChhHHHHHHHH
Confidence 3334444455566666666552 2222 22555667788899999999998763 66677777666655
Q ss_pred HhccCCChhHHHHHHHH----HHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc--HHhHHHHHHHHHh
Q 038801 230 CCYGLQSVSDAEKVIET----MSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ--MVFYSSLISGYVK 303 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~----m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~ 303 (662)
--.+ |+.+.+.++.++ +...|+..+...|-.=...|-..|.+-.+..+.......|+.-. ..+|..-...|.+
T Consensus 450 EE~n-gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 450 EEAN-GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHhc-CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 5565 999998888766 45578888888888878888889999999999999888886443 5688888899999
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL 383 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~ 383 (662)
.+.++-|..+|...++-.+. +...|...+..--..|..+....+|++... .++-....+.......-..|+
T Consensus 529 ~~~~~carAVya~alqvfp~-----k~slWlra~~~ek~hgt~Esl~Allqkav~----~~pkae~lwlM~ake~w~agd 599 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQVFPC-----KKSLWLRAAMFEKSHGTRESLEALLQKAVE----QCPKAEILWLMYAKEKWKAGD 599 (913)
T ss_pred cchHHHHHHHHHHHHhhccc-----hhHHHHHHHHHHHhcCcHHHHHHHHHHHHH----hCCcchhHHHHHHHHHHhcCC
Confidence 99999999999888876432 677888888877888999999999998864 222223333344566677899
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRD 463 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (662)
+..|..++.+..+.. +.+...|-+-++....+..++.|..+|.+.... .|+...|.--+..---.|+.++|.+++++
T Consensus 600 v~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 600 VPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred cHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 999999999998875 457889999999999999999999999998875 66777777666666677899999999988
Q ss_pred HHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038801 464 MREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN 543 (662)
Q Consensus 464 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 543 (662)
..+.- +.-...|..+.+.+-+.++++.|.+.|..-.+. +.-.+-.|-.|...--+.|.+-.|..++++..-.+ .-|
T Consensus 677 ~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 677 ALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 88763 444567777888888899999998888776553 22234568888888888889999999999888763 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccC----------------------CCCCcccHHHHHHHHHHHHccCc
Q 038801 544 DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDG----------------------QKGIKFEHNLVDAFLYALVKGGF 601 (662)
Q Consensus 544 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------------~~~~~p~~~~~~~l~~~~~~~g~ 601 (662)
...|-..|+.=.+.|+.+.|..+..+..+.++..+ -...+-|+.....+...+....+
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 57888899999999999999888888777666433 11223345566667777888899
Q ss_pred hHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHH
Q 038801 602 FDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEA 650 (662)
Q Consensus 602 ~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p 650 (662)
++.|.+.|.+....++. -|.|-.++.+...||.-+.-+.++.+...-||
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 99999999999877776 57999999999999988888888877776665
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=7.4e-12 Score=127.77 Aligned_cols=369 Identities=12% Similarity=0.067 Sum_probs=224.5
Q ss_pred HHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHH
Q 038801 151 SMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGC 230 (662)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 230 (662)
.+...|++++|..++.++++.. |.....+..|...|...|+.+++...+-.+..+ .+.|...|-.+-...
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------NPKDYELWKRLADLS 217 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------CCCChHHHHHHHHHH
Confidence 3334477778887777777743 445555666777777777777777776666543 333445666666666
Q ss_pred hccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHH----hHHHHHHHHHhcCC
Q 038801 231 CYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMV----FYSSLISGYVKLGN 306 (662)
Q Consensus 231 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~----~~~~li~~~~~~g~ 306 (662)
.+. |++++|.-+|.+..+.. +++...+--=...|-+.|+...|..-|.++....-+.|.. .--..+..|...++
T Consensus 218 ~~~-~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 218 EQL-GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred Hhc-ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 665 77777877777777653 3333333334456777777777777777777654211211 12223455666666
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------------h--CCC
Q 038801 307 LESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQK----------------------L--EPS 362 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----------------------~--~~~ 362 (662)
.+.|.+.++..+... +-.-+...++.++..|.+...++.|......+.. . .+.
T Consensus 296 ~e~a~~~le~~~s~~---~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 296 RERAAKALEGALSKE---KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred HHHHHHHHHHHHhhc---cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 677777777666632 2222455667777777777777777777766654 0 011
Q ss_pred CcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 038801 363 GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC--SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440 (662)
Q Consensus 363 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 440 (662)
+..++..+ --++-++.+....+....+...+....+ ..+...|.-+..+|...|++..|..+|..+...-..-+...
T Consensus 373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 12222222 1233344455555555556666666553 33456777777788888888888888887776644445667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCccchhhHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED-------PRVEVKTHDWN 513 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~p~~~~~~ 513 (662)
|-.+..+|...|.+++|.+.|+..+... |.+...-..|-..+.+.|+.++|.+.+..+..- ....|+...--
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 7777778888888888888888777664 555556666667777778888877777774321 12334433334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
.....+.+.|+.++=..+-..|+
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Confidence 44455566666665444444443
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=6.7e-11 Score=120.95 Aligned_cols=515 Identities=10% Similarity=0.029 Sum_probs=335.6
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHH
Q 038801 69 TSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTL 148 (662)
Q Consensus 69 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (662)
...-..-..+..+|+.++|..++.+..+..+. ....|.+|-..+...|+ ..+++.... ...+-.+-|...|-.+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd---~eK~l~~~l--lAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGD---IEKALNFWL--LAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHccc---HHHHHHHHH--HHHhcCCCChHHHHHH
Confidence 33333333445569999999999999987765 56779999999999997 455554333 3344455566889999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCc------cHHH
Q 038801 149 LGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKP------NIYA 222 (662)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~ 222 (662)
.......|.+++|.-.|.+.++.. |++..+..--..+|-+.|+...|.+.|.++.++ .| ....
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~---------~p~~d~er~~d~ 282 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQL---------DPPVDIERIEDL 282 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh---------CCchhHHHHHHH
Confidence 999999999999999999999854 666666666778888999999999999999874 33 1223
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Q 038801 223 CNAALEGCCYGLQSVSDAEKVIETMSVL-GVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG--------------- 286 (662)
Q Consensus 223 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g--------------- 286 (662)
--.+++.+... ++-+.|++.++..... +-.-+...+++++..+.+...++.+......+....
T Consensus 283 i~~~~~~~~~~-~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 283 IRRVAHYFITH-NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 33456667776 7779999998887652 234566678899999999999999888877776621
Q ss_pred ------------CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038801 287 ------------FSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLII 354 (662)
Q Consensus 287 ------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 354 (662)
+.++..+. .++-++......+...-+ ...+..... ...-+...|..+..+|.+.|++++|+.+|.
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~l-l~~l~~~n~-~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEAL-LHFLVEDNV-WVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred ccccccccCCCCCCccchhH-hHhhhhhcccccchHHHH-HHHHHHhcC-ChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 22333331 122233333333322222 333333211 122356788999999999999999999999
Q ss_pred HHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH----
Q 038801 355 EAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDIS---- 430 (662)
Q Consensus 355 ~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---- 430 (662)
.+.. ...--+...|..+..++-..|..++|.+.|+..+... +.+...-..|-..+-+.|+.++|.+.++.+.
T Consensus 439 ~i~~---~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 439 PITN---REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred HHhc---CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 9865 2233346688889999999999999999999999874 5566677778888999999999999999864
Q ss_pred ----hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC----------------------CCCcccHHHHHHHHH
Q 038801 431 ----SSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI----------------------YDLKGSYLTIMTGLM 484 (662)
Q Consensus 431 ----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------------------~~~~~~~~~ll~~~~ 484 (662)
..+..|+........+.+.+.|+.++=..+-..|+.... +-...+...++.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 222334444555566778888988876666555544211 111112222223333
Q ss_pred hcCCHHHHHHHHHH-----HhhCCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHH---H-HHHHHH
Q 038801 485 ENHRPELMAAFLDE-----VVEDPRVEVK--THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQ---T-YLSLIN 552 (662)
Q Consensus 485 ~~~~~~~a~~~~~~-----~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~---~-~~~li~ 552 (662)
+.++.....+-... .....++..+ -..+.-++.++++.+++++|+.+...+....+.- +.. . =...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 33322111111110 0111122222 1245667888999999999999998888753221 221 2 234556
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
++...+++..|...++.|...+.- ...|.. ..|+.....+.+.|+-.--.+++...
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~----~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~ 731 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQF----YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRL 731 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667789999999999999843221 112222 44554555555555544444444443
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=1e-10 Score=115.01 Aligned_cols=487 Identities=11% Similarity=0.065 Sum_probs=323.8
Q ss_pred HHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHh----cCCCCCcccHHHH
Q 038801 108 SLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFK----NRYFMPFELWGGF 183 (662)
Q Consensus 108 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~ 183 (662)
.|.-++++...++.+.+++..+ ...++-+..++.+..+.=-.+|+.+...+++++-+. .|+.-+...+..
T Consensus 411 dLwlAlarLetYenAkkvLNka-----Re~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~- 484 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKA-----REIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK- 484 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH-
Confidence 3444555555556666666554 334445556665555555566666666666655432 333322222221
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038801 184 LVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLA 263 (662)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 263 (662)
=...|-+.|..-.+..+......++.++ .--..||+.--..|.+. +.++-|..+|....+-- +-+...|..+.
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEe-----ed~~~tw~~da~~~~k~-~~~~carAVya~alqvf-p~k~slWlra~ 557 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEE-----EDRKSTWLDDAQSCEKR-PAIECARAVYAHALQVF-PCKKSLWLRAA 557 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhcccc-----chhHhHHhhhHHHHHhc-chHHHHHHHHHHHHhhc-cchhHHHHHHH
Confidence 2333445566655666655555543321 11234677767777776 77777888877766531 33344555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc
Q 038801 264 YLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN 343 (662)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 343 (662)
..--..|..+....+++++...- +-....|-....-+...|++..|..++.+.++..+. +...|-..++....+
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-----seeiwlaavKle~en 631 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-----SEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-----cHHHHHHHHHHhhcc
Confidence 55556677888888888877762 334455556666777778888888887777776432 667888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 038801 344 GNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEAT 423 (662)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 423 (662)
.+++.|..+|.+.. ...|+..+|..-+..---.++.++|.+++++.++. ++.-...|-.+...+-+.++++.|.
T Consensus 632 ~e~eraR~llakar-----~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 632 DELERARDLLAKAR-----SISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ccHHHHHHHHHHHh-----ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888764 45566667766666566668888888888887775 3444567777777888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 038801 424 QLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP 503 (662)
Q Consensus 424 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 503 (662)
+.|..=.+. +.-.+..|-.+...=-+.|.+-+|..++++.+-++ |.+...|...|..=.+.|..+.|..++.+..++
T Consensus 706 ~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe- 782 (913)
T KOG0495|consen 706 EAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE- 782 (913)
T ss_pred HHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 887765544 22245667767666677788888888888887776 666778888888888888888888888887775
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 504 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
+.-+...|..-|....+.++-......+++. .-|....-.+...|-...++++|.+.|++.. .+.
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Rav---------k~d 847 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAV---------KKD 847 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---------ccC
Confidence 3345566777777777666655555444433 4466666677777788899999999999999 455
Q ss_pred ccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHH
Q 038801 584 FEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRK 642 (662)
Q Consensus 584 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~ 642 (662)
||. .+|..+...+.+.|.-+.-.++++++....+.. --..|..+++++...+-.
T Consensus 848 ~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h-----G~~W~avSK~i~n~~~t~ 902 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH-----GELWQAVSKDIKNWRKTP 902 (913)
T ss_pred CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-----CcHHHHHhhhHHhccCCH
Confidence 665 788888888999999999999999987766542 123345555555544433
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=5.4e-11 Score=112.55 Aligned_cols=450 Identities=9% Similarity=0.008 Sum_probs=323.7
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
.+...+-.....=...+++..|..+|++.+... ..+.+.....+.+=-++..+..|..++++...+ -|-
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---------lPR 139 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---------LPR 139 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---------cch
Confidence 344455444555556778888999999998754 344444555566666889999999999999873 444
Q ss_pred HH-HHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 220 IY-ACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 220 ~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
+. .|--.+..--. +|++..|.++|+...+ ..|+...|.+.|+-=.+...++.|..+++..+-. .|++..|-...
T Consensus 140 VdqlWyKY~ymEE~-LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikya 214 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEM-LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYA 214 (677)
T ss_pred HHHHHHHHHHHHHH-hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHH
Confidence 33 44444433333 4999999999999876 5899999999999999999999999999998764 59999999998
Q ss_pred HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc--cchHHHHHH
Q 038801 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD--RSVGFGIIS 376 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~~~~ll~ 376 (662)
..=.++|.+..|..+|...++.-.. -..+...+.+...--.++..++.|.-+|.-... .++-+ ...|.....
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~~--d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld----~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLGD--DEEAEILFVAFAEFEERQKEYERARFIYKYALD----HIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcccHHHHHHHHHH
Confidence 8889999999999999888876321 001223344444444467778888888887764 23222 223333333
Q ss_pred HHHhcCChHHHHHH--------HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHH
Q 038801 377 ACVNLGLSDKAHSI--------LDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV--GNYDALIE 446 (662)
Q Consensus 377 ~~~~~~~~~~a~~~--------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~ 446 (662)
---+-|+....... |+.+...+ +.|-.+|--.++.-...|+.+...++|++.... +.|-. ..|...|-
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH
Confidence 33344554433322 34445443 566678888888888889999999999999876 33311 12222221
Q ss_pred --------HHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH----HhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 447 --------ASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL----MENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 447 --------~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
.=....+.+.+.++|+..++ -+|....||..+=-.| .+..++..|.+++...+ |.-|...+|..
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~ 442 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKG 442 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHH
Confidence 11346789999999999988 3677777777665544 45778899999998876 56777889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFL 593 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~ 593 (662)
.|..-.+.++++.+..++++.++- .| |..+|.-....=...|+.+.|..+|+-+.. +..+......|.+.|
T Consensus 443 YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~------qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAIS------QPALDMPELLWKAYI 514 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc------CcccccHHHHHHHhh
Confidence 999999999999999999999985 45 557887777766778999999999998882 223344457788888
Q ss_pred HHHHccCchHHHHHHHHHHHhCCCCCCHHhHH
Q 038801 594 YALVKGGFFDAVMQVVEKSQEMKVFVDKWKYK 625 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 625 (662)
..-...|.++.|..+++.+.+.......|-..
T Consensus 515 dFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 88889999999999999998776655566554
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=2e-12 Score=121.24 Aligned_cols=495 Identities=10% Similarity=0.030 Sum_probs=292.1
Q ss_pred HHHHhhCChhHHHHHHHHhhhCCCCCChhhHHH-HHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 76 HKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNS-LIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
..|....-..+|+..|+-+.+....|+...... +-..+.+...+..+.+.++..+.....-.........+.+--.+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 334444455667777776666555555433211 2222333333333333333222111111111233455666666789
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhh-----cCCCCccHHHHHHHHH-
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDEN-----LDFMKPNIYACNAALE- 228 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ll~- 228 (662)
.|.++.|+..|+...+.. |.....+++++..++ .|+-++..+.|++|..+..+-. ...-.|+....|-.|.
T Consensus 289 ~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~-i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEA--PNFIAALNLIICAFA-IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred cccchhhHhhHHHHHHhC--ccHHhhhhhhhhhee-cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 999999999999998853 566666777776664 8999999999999987643210 0112345444443332
Q ss_pred ----HHhcc-CCChhHHHHHHHHHHhcCCCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHH
Q 038801 229 ----GCCYG-LQSVSDAEKVIETMSVLGVRPNESS-FGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYV 302 (662)
Q Consensus 229 ----~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 302 (662)
.+-+. ..+.++++-.--++..--+.||-.. |...+..+-.....+.| .+... .-.--|.
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la-------------~dlei--~ka~~~l 430 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELA-------------IDLEI--NKAGELL 430 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhh-------------hhhhh--hHHHHHH
Confidence 22111 0111222222222222222222110 11111111111111111 11111 1123467
Q ss_pred hcCChhhHHHHHHHHHcCCCCCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc
Q 038801 303 KLGNLESASRTILLCLGGGNMEQSDFSKETYC-EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL 381 (662)
Q Consensus 303 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (662)
+.|+++.|.++ .+.++.... ...+...-| +++.-+....++..|.++-+..... -..|......-.+.....
T Consensus 431 k~~d~~~aiei-lkv~~~kdn--k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 431 KNGDIEGAIEI-LKVFEKKDN--KTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAAALTNKGNIAFAN 503 (840)
T ss_pred hccCHHHHHHH-HHHHHhccc--hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHHHhhcCCceeeec
Confidence 89999999998 455555311 001111111 1222222244566676666554321 111111111122334456
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 038801 382 GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLF 461 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (662)
|++++|.+.|++.+...-.-....||. .-.+-..|++++|++.|-++... +..+......+...|-...+..+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 899999999999988764334444443 33567789999999999887643 1236667777788888889999999998
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038801 462 RDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (662)
.+.... +|.|+.....|...|-+.|+-..|.+.+-.--+- ..-+..+...|..-|....-+++|...|++..- +.
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 766544 5788889999999999999999998887665443 233566777788888899999999999998775 68
Q ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHH
Q 038801 542 PNDQTYLSLINGYVT-AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEK 611 (662)
Q Consensus 542 p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
|+..-|..++..|.+ .|++.+|++++++..+ .+.-|......|++.+...|.. ++.++-++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hr--------kfpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR--------KFPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--------hCccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 999999999887765 6999999999999994 4555777888888888777653 34444433
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=2.5e-11 Score=123.30 Aligned_cols=224 Identities=16% Similarity=0.070 Sum_probs=143.8
Q ss_pred cccccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCC
Q 038801 61 QTLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLL 140 (662)
Q Consensus 61 ~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (662)
..+..|+.++|..+|..|+..|+.+.|- +|..|.-.+..-....++.++.+-...++. +++..|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~---------------Enpkep 81 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDA---------------ENPKEP 81 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccc---------------cCCCCC
Confidence 4566788899999999999999998888 888887666555666677777776666653 334457
Q ss_pred ChHHHHHHHHHHHhcCCchhHHHHHHH-HHh-------cCCCCCcc-------------cHHHHHHHHhhcCCcHHHHHH
Q 038801 141 DFQTVHTLLGSMRNANTAAPAFALVKC-MFK-------NRYFMPFE-------------LWGGFLVDICRKNSNFVAFLK 199 (662)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~-------~~~~~~~~-------------~~~~~l~~~~~~~~~~~~a~~ 199 (662)
..++|..|+.+|...|++.. ++..++ |.. .|...+.. .-....+....-.|-++.+++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887655 222222 221 11100000 000001111111233333333
Q ss_pred HHHHHHHhhhh------------------------hhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCC
Q 038801 200 VFEECCRIALD------------------------ENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPN 255 (662)
Q Consensus 200 ~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 255 (662)
++..+...... ....+ .|+..+|.+++.....+ |+.+.|..++.+|++.|++.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaa-g~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAA-GDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhc-CchhhHHHHHHHHHHcCCCcc
Confidence 33222111000 01122 57888888888888877 888888888888888888888
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC
Q 038801 256 ESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGN 306 (662)
Q Consensus 256 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 306 (662)
..-|-.|+-+ .++...+..++..|...|+.|+..|+...+..+.+.|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8777666655 77778888888888888888888888887777777555
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=8.6e-09 Score=98.01 Aligned_cols=458 Identities=8% Similarity=0.038 Sum_probs=316.4
Q ss_pred hCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchh
Q 038801 81 TNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAP 160 (662)
Q Consensus 81 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 160 (662)
+++...|..+|+..+..... +...|-.-+..=.+.+....+..+++..+..+.. .|. .+-..+..=-..|++..
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR----Vdq-lWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR----VDQ-LWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch----HHH-HHHHHHHHHHHhcccHH
Confidence 56667788888888765433 5556666677777777777777777665432211 111 12222333345678888
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHH
Q 038801 161 AFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDA 240 (662)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 240 (662)
|.++|++-.+ ..|+... ....+.+=.+-...+.|..++++..- ..|++.+|--...---+. |++..|
T Consensus 160 aRqiferW~~--w~P~eqa-W~sfI~fElRykeieraR~IYerfV~---------~HP~v~~wikyarFE~k~-g~~~~a 226 (677)
T KOG1915|consen 160 ARQIFERWME--WEPDEQA-WLSFIKFELRYKEIERARSIYERFVL---------VHPKVSNWIKYARFEEKH-GNVALA 226 (677)
T ss_pred HHHHHHHHHc--CCCcHHH-HHHHHHHHHHhhHHHHHHHHHHHHhe---------ecccHHHHHHHHHHHHhc-CcHHHH
Confidence 8888888776 3344444 45566777778888888888888754 678888887777766776 888888
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH----HcCCHHHHHHHHHHHHhcCCCCc--HHhHHHHHHHHHhcCChhhHHHH-
Q 038801 241 EKVIETMSVLGVRPNESSFGFLAYLYA----LKGLQEKIVELESLMNEFGFSSQ--MVFYSSLISGYVKLGNLESASRT- 313 (662)
Q Consensus 241 ~~~~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~- 313 (662)
..+|+...+. --|...-..++.+++ +...++.|.-+|+-..+. ++.+ ...|..+...=-+.|+.....++
T Consensus 227 R~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 8888877553 112222233333443 556778888888887775 2333 44555555444445554433332
Q ss_pred -------HHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc-c------hHHHHHHHH-
Q 038801 314 -------ILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR-S------VGFGIISAC- 378 (662)
Q Consensus 314 -------~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~------~~~~ll~~~- 378 (662)
|++.+...+. |-.+|-..++.-...|+.+...++|++... +++|-. . +|.-+=-+|
T Consensus 304 v~KRk~qYE~~v~~np~-----nYDsWfdylrL~e~~g~~~~Ire~yErAIa----nvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKNPY-----NYDSWFDYLRLEESVGDKDRIRETYERAIA----NVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhhhHHHHHHHhCCC-----CchHHHHHHHHHHhcCCHHHHHHHHHHHHc----cCCchhHHHHHHHHHHHHHHHHHH
Confidence 4445554322 677888888888889999999999999874 555521 1 111111111
Q ss_pred --HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 379 --VNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYC----KEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 379 --~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
....+++.+.++|+..++. ++....|+.-+=-.|+ ++.++..|.+++..... .-|-..++...|..=.+.+
T Consensus 375 eEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 2467889999999998883 4556667666544444 67899999999988774 4788899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 038801 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTL 532 (662)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (662)
++|.+..+|++.++-+ |.+..+|......=...|+.+.|..+|+-.+..+...-....|.+.|.--...|.++.|..++
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999999987 777788888888888899999999999999887555545567888888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHhhc
Q 038801 533 RRMIFLQFEPNDQTYLSLINGYV-----TAE-----------QYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 533 ~~m~~~~~~p~~~~~~~li~~~~-----~~~-----------~~~~a~~~~~~m~~~~~ 575 (662)
+++++. .+-...|-+....-. +.+ ....|.++|+++...++
T Consensus 531 erlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k 587 (677)
T KOG1915|consen 531 ERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLK 587 (677)
T ss_pred HHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 999975 344446655544333 223 56678889988876555
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=2e-11 Score=123.19 Aligned_cols=249 Identities=8% Similarity=0.045 Sum_probs=117.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCcccccchHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 038801 341 LQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF--GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 418 (662)
.+.|+++.|.+.+.++.+ ..|+...+. .....+...|+++.|.+.++++.+.. +-+...+..+...|.+.|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~-----~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gd 202 (398)
T PRK10747 129 QQRGDEARANQHLERAAE-----LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGA 202 (398)
T ss_pred HHCCCHHHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHh
Confidence 556666666666655532 223332222 12344555566666666666655544 3345555555566666666
Q ss_pred HHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 038801 419 TAEATQLVMDISSSGLQLDV-------GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 491 (662)
+++|.+++..+.+.+..++. ..|..++.......+.+...++++.+.+. .+.+......+...+...|+.++
T Consensus 203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHH
Confidence 66666666666555433211 11222222222233334444444443322 13344445555555555555555
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
|.+++.+..+. .|+.. -.++.+....++.+++.+..+...+. .|+. ..+..+...|.+.+++++|.+.|+.+
T Consensus 282 A~~~L~~~l~~---~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a 354 (398)
T PRK10747 282 AQQIILDGLKR---QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHhc---CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555554442 11211 11222223335555555555555543 3332 34445555555555555555555555
Q ss_pred HHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 571 KRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
. ...|+...+..+..++.+.|+.++|.+++++.
T Consensus 355 l---------~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 355 L---------KQRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred H---------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 33455555555555555555555555555543
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=2.9e-11 Score=122.74 Aligned_cols=227 Identities=7% Similarity=-0.010 Sum_probs=100.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHH---HHc
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYD-ALIEA---SIT 450 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~---~~~ 450 (662)
...+...|+++.|.+.++.+.+.. +-+..++..+...+...|++++|.+++..+.+.+.. +...+. .-..+ +..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554443 233444445555555555555555555555544322 111111 00011 111
Q ss_pred CCCHHHHHHHHHHHHHcCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHH
Q 038801 451 SQDFQSAFSLFRDMREARI---YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (662)
.+..+++.+.+..+.+... +.+...+..+...+...|+.+.|.+.+++..+..+-.++..............++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 1112222223333322210 1233444444445555555555555555544431111110001111111223355556
Q ss_pred HHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHH
Q 038801 528 AKRTLRRMIFLQFEPND---QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDA 604 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 604 (662)
+.+.+++..+. .|+. ....++...|.+.|++++|.+.|+... .....|+..++..+...+.+.|+.++
T Consensus 318 ~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-------a~~~~p~~~~~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 318 LEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-------ACKEQLDANDLAMAADAFDQAGDKAE 388 (409)
T ss_pred HHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-------HhhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 66666655543 3333 334456666666666666666666433 22445666666666666666666666
Q ss_pred HHHHHHHH
Q 038801 605 VMQVVEKS 612 (662)
Q Consensus 605 A~~~~~~m 612 (662)
|.+++++.
T Consensus 389 A~~~~~~~ 396 (409)
T TIGR00540 389 AAAMRQDS 396 (409)
T ss_pred HHHHHHHH
Confidence 66666654
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=7.2e-11 Score=106.50 Aligned_cols=226 Identities=10% Similarity=0.071 Sum_probs=149.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-c--HHhHHHHHHHHHhcCChhhHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSS-Q--MVFYSSLISGYVKLGNLESAS 311 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~A~ 311 (662)
.+.++|.++|-+|.+.. +-+..+--+|-+.|-+.|.++.|+.++..+.++.--+ + ....-.|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 89999999999998632 2222334456788899999999999999998763111 1 334556778899999999999
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH-HHHHHHhcCChHHHHHH
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG-IISACVNLGLSDKAHSI 390 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~ 390 (662)
++|...++.... -......|+..|-+..+|++|++.-+++.++.+.........|.+ +...+....+++.|..+
T Consensus 128 ~~f~~L~de~ef-----a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 128 DIFNQLVDEGEF-----AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred HHHHHHhcchhh-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 998887775322 445677788888888888888888887766443333333222222 33444445566666776
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 391 LDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
+.+..+.+ +.++..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+.
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66666654 33334444455666666777777777766666533333445566666666666666666666666554
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=6.9e-11 Score=119.34 Aligned_cols=281 Identities=11% Similarity=0.083 Sum_probs=153.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHH--HHHHHHHhcCChhhHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESS-FGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYS--SLISGYVKLGNLESAS 311 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 311 (662)
|+++.|.+.+....+.+ ++... |.....+..+.|+++.|.+.+.++.+.. |+...+. .....+...|+.+.|.
T Consensus 98 Gd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 98 GDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 89999888777765432 12222 3223345578889999999998887753 5543332 3356788888888888
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc-------chHHHHHHHHHhcCCh
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR-------SVGFGIISACVNLGLS 384 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~ 384 (662)
..+.+..+..+. +...+..+...|.+.|++++|.+++..+.+ ....++. .+|..++.......+.
T Consensus 174 ~~l~~~~~~~P~-----~~~al~ll~~~~~~~gdw~~a~~~l~~l~k---~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 174 HGVDKLLEVAPR-----HPEVLRLAEQAYIRTGAWSSLLDILPSMAK---AHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHHHHhcCCC-----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 887777766433 667777888888888888888888888776 2222111 0111222222222233
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. .+|... .++.+....++.+++++..+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHH
Confidence 3333333333221 1234444444555555555555555555554442 222211 1122222334445555444444
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 465 REARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 465 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
.+.. |.+. ..+.++...+.+.|++++|.+.|+...+. .|+.
T Consensus 321 lk~~-P~~~------------------------------------~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~ 361 (398)
T PRK10747 321 IKQH-GDTP------------------------------------LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDA 361 (398)
T ss_pred HhhC-CCCH------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH
Confidence 4332 2222 33455555555666666666666665552 4555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.+|..+...+.+.|+.++|.+++++..
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555556666666666666666665543
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=5e-14 Score=135.82 Aligned_cols=258 Identities=14% Similarity=0.145 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038801 335 EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG-IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY 413 (662)
Q Consensus 335 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (662)
.+...+.+.|++++|++++.+... ...+|+...|.. +...+...++++.|.+.++++...+ +-+...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~---~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQ---KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccc-ccccccccccccc-
Confidence 445556666666666666644321 111344444433 2333444556666666666665554 2244455555554
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHhcCCHHHH
Q 038801 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR-IYDLKGSYLTIMTGLMENHRPELM 492 (662)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a 492 (662)
...+++++|.+++....+. .++...+..++..+.+.|+++++..+++.+.... .+.+...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4556666666665554433 2344445555555666666666666666554322 123333444444445555555555
Q ss_pred HHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
.+.+++..+..+- |....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|+.+|++..
T Consensus 166 ~~~~~~al~~~P~--~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~- 241 (280)
T PF13429_consen 166 LRDYRKALELDPD--DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL- 241 (280)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc-
Confidence 5555554442111 23334444555555555555444444444331 2222344444555555555555555555544
Q ss_pred hhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHH
Q 038801 573 KISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEK 611 (662)
Q Consensus 573 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
...| |..+...+..++...|+.++|.++.++
T Consensus 242 --------~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 242 --------KLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp --------HHSTT-HHHHHHHHHHHT--------------
T ss_pred --------cccccccccccccccccccccccccccccccc
Confidence 1122 334444445555555555555554444
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=8.7e-11 Score=119.30 Aligned_cols=289 Identities=13% Similarity=0.041 Sum_probs=162.4
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcH--HhHHHHHHHHHhcCChhhHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSF-GFLAYLYALKGLQEKIVELESLMNEFGFSSQM--VFYSSLISGYVKLGNLESAS 311 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~ 311 (662)
|+++.|.+.+....+. .|+...+ -....+..+.|+.+.|.+.+....+.. |+. .+.......+...|+.+.|.
T Consensus 98 g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 98 GDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 6777777766665443 2333222 222345556666666666666665432 332 22333455556666666666
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHH
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSIL 391 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 391 (662)
..+..+.+..+. +...+..+...+.+.|++++|.+++..+.+
T Consensus 174 ~~l~~l~~~~P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k--------------------------------- 215 (409)
T TIGR00540 174 HGVDKLLEMAPR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAK--------------------------------- 215 (409)
T ss_pred HHHHHHHHhCCC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---------------------------------
Confidence 665555554322 444555555555555555555555555544
Q ss_pred HHHHHCCCCCChhhHHHHHHHH---HHcCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 392 DEMNACGCSVGLGVYVPTLKAY---CKEHRTAEATQLVMDISSSGL---QLDVGNYDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 392 ~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
.+..+.......-..++ ...+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..
T Consensus 216 -----~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 216 -----AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred -----cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 33211111100000111 111122222223333333211 1255666666677777777777777777776
Q ss_pred HcCCCCCccc--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038801 466 EARIYDLKGS--YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN 543 (662)
Q Consensus 466 ~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 543 (662)
+.. +++... ...........++.+.+.+.+++..+..+-.|+.....++...+.+.|++++|.+.|+........||
T Consensus 291 ~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 291 KKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred hhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 653 222111 11111222334566777777777776545555435667888889999999999999995444345789
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 544 DQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 544 ~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...+..+...+.+.|+.++|.++|++..
T Consensus 370 ~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 370 ANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9888899999999999999999999875
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.9e-10 Score=108.27 Aligned_cols=217 Identities=13% Similarity=0.113 Sum_probs=172.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSL 460 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (662)
.|+.-.+..-|+..+..... +...|--+..+|....+.++....|++..+.+.. |..+|..-.+.+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 57888888899998887533 3334777778899999999999999999887432 778888888888889999999999
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 461 FRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 461 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
|++.+... |.+...|.-+..+..+.++++++...|++.+++.+--| ..|+.....+...++++.|.+.|+..++.
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~--Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP--EVYNLFAEILTDQQQFDKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHhhHHhHHHHHHHHHHHHhh--
Confidence 99998876 66667777888888899999999999999999755444 57888999999999999999999998873
Q ss_pred CCC-------HHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHH
Q 038801 541 EPN-------DQTYL--SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVE 610 (662)
Q Consensus 541 ~p~-------~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 610 (662)
.|+ ..++. .++..- =.+++..|.+++++.. .+.|-. ..|..|.....+.|+.++|+++|+
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~---------e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAI---------ELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHH---------ccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444 22221 111111 2389999999999998 455544 678889999999999999999999
Q ss_pred HHHh
Q 038801 611 KSQE 614 (662)
Q Consensus 611 ~m~~ 614 (662)
+...
T Consensus 562 ksa~ 565 (606)
T KOG0547|consen 562 KSAQ 565 (606)
T ss_pred HHHH
Confidence 8643
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=3.8e-09 Score=100.20 Aligned_cols=356 Identities=10% Similarity=-0.013 Sum_probs=247.2
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHH--
Q 038801 184 LVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGF-- 261 (662)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~-- 261 (662)
..-...+.|..+.|+..|.+.... .+..-..|-.|.... .+.+.+ .... .|...|..-+..
T Consensus 170 ~Gvv~k~~~~~s~A~~sfv~~v~~--------~P~~W~AWleL~~li----t~~e~~----~~l~-~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAIDSFVEVVNR--------YPWFWSAWLELSELI----TDIEIL----SILV-VGLPSDMHWMKKFF 232 (559)
T ss_pred HHHHHHhhchHHHHHHHHHHHHhc--------CCcchHHHHHHHHhh----chHHHH----HHHH-hcCcccchHHHHHH
Confidence 334445667888888888876441 223333444433322 222222 2221 122222222221
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHH
Q 038801 262 LAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFL 341 (662)
Q Consensus 262 li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 341 (662)
+..++-.....+++.+=.+.....|++-+...-+....+.-...++|+|+.+|++..+..+. .--|..+|+.++..--
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY--Rl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY--RLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--cchhHHHHhHHHHHHh
Confidence 33556666678888888888888887666655555555666778999999998888877322 1126677777665443
Q ss_pred hcCCH-HHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 038801 342 QNGNV-KGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 342 ~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (662)
..... --|..+++- +...|. |+..+.+-|+-.++.++|...|++.++.+ +.....|+.+.+-|...++..
T Consensus 311 ~~skLs~LA~~v~~i------dKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNI------DKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred hhHHHHHHHHHHHHh------ccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccH
Confidence 32222 223333322 444553 55667777788889999999999999876 556788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 500 (662)
.|.+-|+...+.+ +.|-..|-.|.++|.-.+...=|+-.|++..+.. |.|...|..|...|.+.++.++|++.|.+..
T Consensus 382 AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 382 AAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999874 3388999999999999999999999999998875 7888999999999999999999999999988
Q ss_pred hCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 501 EDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF----LQFEPN-D-QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.-... +...|..|.+.|-+.++.++|.+.|++-++ .|..-+ . ..-.-|..-+.+.+++++|..+.....
T Consensus 460 ~~~dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 460 LLGDT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hcccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 75332 456789999999999999999999988776 232222 2 223335556667788888877665555
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.9e-13 Score=131.84 Aligned_cols=260 Identities=15% Similarity=0.063 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
.+...+.+.|++++|+++++........|.+..+...+..++...++++.|++.++++... -.-+...+..+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~~~~~l 84 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccc
Confidence 3455555666666666666443332212344444444555555556666666666666442 11123334444
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCcHHhHHHHHHHHHhcC
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG-FSSQMVFYSSLISGYVKLG 305 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g 305 (662)
+.. ... +++++|.++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|
T Consensus 85 ~~l-~~~-~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 85 IQL-LQD-GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred ccc-ccc-cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 444 343 6666666666554333 2344445555555566666666666666554322 2344555555555566666
Q ss_pred ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChH
Q 038801 306 NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSD 385 (662)
Q Consensus 306 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 385 (662)
+.++|.+.|.+.++..+. |....+.++..+...|+.+++.+++....+ ..+.|...+..+..++...|+.+
T Consensus 161 ~~~~A~~~~~~al~~~P~-----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~lg~~~ 231 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD-----DPDARNALAWLLIDMGDYDEAREALKRLLK----AAPDDPDLWDALAAAYLQLGRYE 231 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT------HHHHHHHHHHHCTTCHHHHHHHHHHHHHH----H-HTSCCHCHHHHHHHHHHT-HH
T ss_pred CHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHCCChHHHHHHHHHHHH----HCcCHHHHHHHHHHHhccccccc
Confidence 666666665555554322 344555555555555555555555554443 11223333444445555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMD 428 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (662)
+|...|++..+.. +.|..+...+..++...|+.++|..+..+
T Consensus 232 ~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 232 EALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 5555555544432 33444444444555555555555444443
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.2e-11 Score=122.38 Aligned_cols=290 Identities=10% Similarity=0.043 Sum_probs=200.7
Q ss_pred ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChH
Q 038801 306 NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSD 385 (662)
Q Consensus 306 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 385 (662)
+..+|...|.. +..... -...+...+..+|...+++++|.++|+.+++..+-.+. +..+|++++--+- +.-
T Consensus 334 ~~~~A~~~~~k-lp~h~~----nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~-~meiyST~LWHLq---~~v 404 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHY----NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK-GMEIYSTTLWHLQ---DEV 404 (638)
T ss_pred HHHHHHHHHHh-hHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-chhHHHHHHHHHH---hhH
Confidence 34566666655 332111 02244556667777777777777777777665443332 3445665544332 111
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
+--.+-+.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+....++|.|...|+..
T Consensus 405 ~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 405 ALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 1112223333332 556789999999999999999999999988876 45 6788888888888888999999999887
Q ss_pred HHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038801 465 REARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN 543 (662)
Q Consensus 465 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 543 (662)
+... +-.-..|..+...|.+.++++.|+-.|++..+- .| +.+....+...+-+.|+.|+|++++++..... .-|
T Consensus 482 l~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn 556 (638)
T KOG1126|consen 482 LGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKN 556 (638)
T ss_pred hcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcC---CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCC
Confidence 6554 222234555667888999999999999888764 33 35566677777888899999999999988753 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCH
Q 038801 544 DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDK 621 (662)
Q Consensus 544 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 621 (662)
+.+--.-+..+...+++++|+..+++++ .+.|+. ..|..++..|-+.|+.+.|+.-|--+.+.++++.-
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk---------~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELK---------ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHH---------HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4444445566677799999999999999 566765 67778888899999999999888888777766443
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.5e-09 Score=105.48 Aligned_cols=487 Identities=10% Similarity=-0.002 Sum_probs=318.4
Q ss_pred chhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHH
Q 038801 66 DNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTV 145 (662)
Q Consensus 66 ~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (662)
.+..-+..+++.+..+.++..|.-+-++....+. |+..---+.+.+.-.++...+..++... .-...|..+.
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~------~le~~d~~cr 85 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTY------KLEKRDIACR 85 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHh------hhhhhhHHHH
Confidence 3455566777778888888889888888876654 4444445666666666655555555432 1223455677
Q ss_pred HHHHHHHHhcCCchhHHHHHH----HHHhcCCCCCc--------ccH----HHHHHHHhh-------cCCcHHHHHHHHH
Q 038801 146 HTLLGSMRNANTAAPAFALVK----CMFKNRYFMPF--------ELW----GGFLVDICR-------KNSNFVAFLKVFE 202 (662)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~--------~~~----~~~l~~~~~-------~~~~~~~a~~~~~ 202 (662)
......+.+..+++.|..++. .+......+.+ ... .+.-.+.|. ...+.++|...|.
T Consensus 86 yL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 86 YLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHH
Confidence 778888899999999999998 22211111111 000 112222222 2345666666666
Q ss_pred HHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC----CCCcccHHHHHHHHHHcCCHHHHHHH
Q 038801 203 ECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGV----RPNESSFGFLAYLYALKGLQEKIVEL 278 (662)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~a~~~ 278 (662)
+. ...|...|..+...... ..-.+.+.|+.+..... .-+......+.....-...-+.....
T Consensus 166 ~A-----------l~~D~~c~Ea~~~lvs~---~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r 231 (611)
T KOG1173|consen 166 EA-----------LLADAKCFEAFEKLVSA---HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR 231 (611)
T ss_pred HH-----------HhcchhhHHHHHHHHHH---HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc
Confidence 65 44566666555543322 22223333333332111 11111222222111000000000101
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 279 ESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQK 358 (662)
Q Consensus 279 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 358 (662)
-++..-.+..-+........+-+...+++.+..+++...++..+ +....+..-|.++...|+..+-..+=.++..
T Consensus 232 ~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-----fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~ 306 (611)
T KOG1173|consen 232 NEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-----FHLPCLPLHIACLYELGKSNKLFLLSHKLVD 306 (611)
T ss_pred CchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-----CCcchHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11111123345556666677778888999999999888888742 2556667777788999998888877777765
Q ss_pred hCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh
Q 038801 359 LEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV 438 (662)
Q Consensus 359 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 438 (662)
..+-...+|.++..-|...|+..+|.+.|.+....+ +.=...|-.+...|+-.|.-|.|...|...-+.- .-..
T Consensus 307 ----~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~h 380 (611)
T KOG1173|consen 307 ----LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCH 380 (611)
T ss_pred ----hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCc
Confidence 333456778888888888899999999999876653 2223578888899999999999999888776541 1122
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cchhhHH
Q 038801 439 GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED----PRVE-VKTHDWN 513 (662)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-p~~~~~~ 513 (662)
.-+--+.--|.+.++++-|.+.|.+..... |.|+..++-+.......+.+.+|..+|...... .+-+ -...+++
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 223334556788899999999999888764 777888888888888899999999999887631 1111 1344688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHH
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFL 593 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~ 593 (662)
.|.++|.+.+.+++|+..+++.+... .-|..++.++.-.|...|+++.|++.|++.. .+.|+..+...++
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL---------~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---------ALKPDNIFISELL 529 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---------hcCCccHHHHHHH
Confidence 99999999999999999999999752 3477899999999999999999999999999 8899987777666
Q ss_pred HHH
Q 038801 594 YAL 596 (662)
Q Consensus 594 ~~~ 596 (662)
..+
T Consensus 530 ~~a 532 (611)
T KOG1173|consen 530 KLA 532 (611)
T ss_pred HHH
Confidence 643
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.49 E-value=2.7e-10 Score=116.04 Aligned_cols=506 Identities=14% Similarity=0.051 Sum_probs=250.0
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHH
Q 038801 89 KSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCM 168 (662)
Q Consensus 89 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 168 (662)
.++-.+...|+.|+..||..++..|+..|+.+.+- .|.. |+.+..+.+...++.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~f----m~~ksLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPF----MEIKSLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhh----hhcccccccchhHHHHHhcccccccccCCC------
Confidence 45566778899999999999999999999977666 5544 457777778889999999999999887776
Q ss_pred HhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhh--------------hh---cCCCCccHHHHHHHHHHHh
Q 038801 169 FKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALD--------------EN---LDFMKPNIYACNAALEGCC 231 (662)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~---~~~~~~~~~~~~~ll~~~~ 231 (662)
.+....++.|...|+..|++..-..+=+.+..+... +. ..+..||..+- +....
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv 150 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLV 150 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHH
Confidence 244445778999999999877632222223222110 11 12233443321 11111
Q ss_pred ccCCChhHHHHHHHH-----------------------------HHhcCC-CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 038801 232 YGLQSVSDAEKVIET-----------------------------MSVLGV-RPNESSFGFLAYLYALKGLQEKIVELESL 281 (662)
Q Consensus 232 ~~~~~~~~a~~~~~~-----------------------------m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 281 (662)
-. |-++.+++++.. |.+.+. .|+..+|..+++...-.|+.+.|..++.+
T Consensus 151 ~e-glwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 151 LE-GLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HH-HHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 11 222222222211 111222 47777777777777777777777777777
Q ss_pred HHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 038801 282 MNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEP 361 (662)
Q Consensus 282 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 361 (662)
|.+.|++.+..-+-.|+-+ .++..-+..+ .+++.. .|+.|+..|+...+..+..+|....+.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~v-lrgmqe---~gv~p~seT~adyvip~l~N~~t~~~~----------- 291 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFV-LRGMQE---KGVQPGSETQADYVIPQLSNGQTKYGE----------- 291 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHH-HHHHHH---hcCCCCcchhHHHHHhhhcchhhhhcc-----------
Confidence 7777777777666666654 4444444444 344443 477777777777666666655422111
Q ss_pred CCcccccchHHHHHHHHHhcCChHHHHHHH------------HHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038801 362 SGIVVDRSVGFGIISACVNLGLSDKAHSIL------------DEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDI 429 (662)
Q Consensus 362 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~------------~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 429 (662)
.|. +....+.+-+.+-.-.| ..|.+.+ .+..=.|+.....+|...+.. ...|+-+..+++-..|
T Consensus 292 e~s-q~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l 367 (1088)
T KOG4318|consen 292 EGS-QLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQL 367 (1088)
T ss_pred ccc-chhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhh
Confidence 121 22222222211111122 1111111 111112333333334333322 2256666666666555
Q ss_pred HhCC--CCC-ChhhHHHHHHHHHcCCCHHHHHHHHH--HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC--
Q 038801 430 SSSG--LQL-DVGNYDALIEASITSQDFQSAFSLFR--DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED-- 502 (662)
Q Consensus 430 ~~~g--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 502 (662)
..-- ..+ ++..|..++.-|.+.-+..-...++. +...... +....-.+. -+...-+...+.+-+..+...
T Consensus 368 ~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l--~se~tp~vs-ell~~lrkns~lr~lv~Lss~El 444 (1088)
T KOG4318|consen 368 LNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNL--NSEDTPRVS-ELLENLRKNSFLRQLVGLSSTEL 444 (1088)
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh--chhhhHHHH-HHHHHhCcchHHHHHhhhhHHHH
Confidence 4210 111 22334333333332211111111111 1100000 000000000 000000111111111110000
Q ss_pred -CCC-------ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 503 -PRV-------EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 503 -~~~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
... .+-...-+.++..+++.-+..+++..-+.....- .| ..|..||+-+......+.|..+.++....
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~- 520 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTR- 520 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhccc-
Confidence 000 0111234555556666555556555444443321 11 56777777777777777777777776621
Q ss_pred cccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CC---HHhHHHHHHHHhhhhhhhHHHHHHHHhh
Q 038801 575 STDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VD---KWKYKQAFMENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 575 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~---~~~~~~~~~~~~~~~~~a~~~~~~~~~l 648 (662)
+..+..|..-+..+.+.+.+.+....+..+++++.+.-.. |. +...++.....-|+.+.-++..+-+..+
T Consensus 521 ----d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl 594 (1088)
T KOG4318|consen 521 ----DESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL 594 (1088)
T ss_pred ----chhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 2234455666677777777777777777777777553222 21 2222344444445555555555554443
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.4e-09 Score=103.74 Aligned_cols=390 Identities=12% Similarity=0.009 Sum_probs=254.0
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhc
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPN-ESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ-MVFYSSLISGYVKL 304 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~ 304 (662)
-+-|.++ |++++|++.|.+..+. .|| ...|...-.+|...|+++++.+--...++. .|+ +..+..=..++-..
T Consensus 122 GN~~f~~-kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 122 GNKFFRN-KKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhc-ccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 3457777 9999999999999875 688 777888888899999999998888777774 466 45555566677777
Q ss_pred CChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------HHhCCCCcccccchHHHHHH
Q 038801 305 GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEA--------QKLEPSGIVVDRSVGFGIIS 376 (662)
Q Consensus 305 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m--------~~~~~~~~~~~~~~~~~ll~ 376 (662)
|++++|+.= +|-.++..++....-.--+.+++.+. .+-......|......+...
T Consensus 197 g~~~eal~D-----------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 197 GKFDEALFD-----------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred ccHHHHHHh-----------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 888777531 11222222222222222222222211 00001122232222222211
Q ss_pred HHHh-------------------------cC---ChHHHHHHHHHHHHC---CCC---CC------hhhHHHHHHHHHHc
Q 038801 377 ACVN-------------------------LG---LSDKAHSILDEMNAC---GCS---VG------LGVYVPTLKAYCKE 416 (662)
Q Consensus 377 ~~~~-------------------------~~---~~~~a~~~~~~m~~~---~~~---~~------~~~~~~li~~~~~~ 416 (662)
.+-. .+ .+..+...+.+-... ... .| ..+.......+.-.
T Consensus 260 sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 260 SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 1110 01 122222222221110 001 11 11222222234457
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFL 496 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 496 (662)
|+.-.|..-|+........ +...|..+...|....+.++-+..|++..+.+ +.+..+|..-.+...-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 8899999999999887433 23338888889999999999999999999887 666778988888888899999999999
Q ss_pred HHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 497 DEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 497 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
++.+. +.| ++..|-.+.-+..+.+++++++..|++.++. .|+. ..|+.....+...+++++|.+.|+...+.-
T Consensus 418 ~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 418 QKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99876 344 3566777777778999999999999999985 5655 699999999999999999999999998322
Q ss_pred cccCCCCCcccH--HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHH-HHhhhhhhhHHHHHHHHhh
Q 038801 575 STDGQKGIKFEH--NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM-ENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 575 ~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~-~~~~~~~~a~~~~~~~~~l 648 (662)
+. ..++-.+. .+...++..-.+ +++.+|.+++.+..+.++.-+.-..-++.. ...|++++|..+.++...+
T Consensus 493 ~~--~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PR--EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cc--cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 21 12222222 233333333334 999999999999999888877544445544 4568999998888776654
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=4.3e-10 Score=101.60 Aligned_cols=226 Identities=14% Similarity=0.116 Sum_probs=135.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV----GNYDALIEASI 449 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~ 449 (662)
|..-|...|-++.|+++|..+.+.+ .--......|+..|-...+|++|.++-+++.+.+-.+.. ..|.-+...+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 4455566666777777777766644 233445566777777777777777777777666444322 23445555555
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAK 529 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (662)
...+.+.|..++++..+.+ +..+..-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|.+.|+.++..
T Consensus 192 ~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 192 ASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6667777777777777654 223333344456667777777777777777665 22223445677777788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHH---ccCchHHHH
Q 038801 530 RTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALV---KGGFFDAVM 606 (662)
Q Consensus 530 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~ 606 (662)
..+.++.+.. +....-..+-..-....-.+.|..++.+-. .-.|+...+..|+..-. ..|+..+-.
T Consensus 270 ~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql---------~r~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 270 NFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQL---------RRKPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred HHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHH---------hhCCcHHHHHHHHHhhhccccccchhhhH
Confidence 7777777653 333333333333333344555555554444 23577777777766543 345566666
Q ss_pred HHHHHHH
Q 038801 607 QVVEKSQ 613 (662)
Q Consensus 607 ~~~~~m~ 613 (662)
..+.+|.
T Consensus 339 ~~lr~mv 345 (389)
T COG2956 339 DLLRDMV 345 (389)
T ss_pred HHHHHHH
Confidence 6666664
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.46 E-value=6.6e-08 Score=95.64 Aligned_cols=538 Identities=9% Similarity=-0.014 Sum_probs=306.5
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHhhh-CCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHH
Q 038801 70 SLETNLHKSLLTNNTDEAWKSFKSLTA-NSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTL 148 (662)
Q Consensus 70 ~~~~~l~~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (662)
.|-.-+.-+..+|+...-...|+..+. ..+.-....|...+......+-.+-....++.++ ..++..-+..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL--------k~~P~~~eey 175 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL--------KVAPEAREEY 175 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH--------hcCHHHHHHH
Confidence 344444455556666555556655443 2333344456666666666555555555555442 1233344556
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCC-----CCCcccHHHHHHHHhhcCCcHHH---HHHHHHHHHHhhhhhhcCCCCccH
Q 038801 149 LGSMRNANTAAPAFALVKCMFKNRY-----FMPFELWGGFLVDICRKNSNFVA---FLKVFEECCRIALDENLDFMKPNI 220 (662)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 220 (662)
+..++..+++++|.+.+..++.... .+++......+-.+.++..+.-. ...++..+. +.-+|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi---------~rftDq 246 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI---------RRFTDQ 246 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc---------ccCcHH
Confidence 6666777777777777766664221 12222223333333333322211 111222221 123443
Q ss_pred --HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC----------------------HHHHH
Q 038801 221 --YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL----------------------QEKIV 276 (662)
Q Consensus 221 --~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~----------------------~~~a~ 276 (662)
..|++|-+-|.+. |.+++|.++|++-... ..+..-|+.+.++|++-.. ++-..
T Consensus 247 ~g~Lw~SLAdYYIr~-g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRS-GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 4789999999997 9999999999997654 3345556666666653211 11222
Q ss_pred HHHHHHHhcC-----------CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHhcC
Q 038801 277 ELESLMNEFG-----------FSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDF-SKETYCEVVKGFLQNG 344 (662)
Q Consensus 277 ~~~~~~~~~g-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~ 344 (662)
.-|+.+.... -+-++..|..-+. +..|+..+-..+|-+.++.-......- -...|..+.+-|-.+|
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcC
Confidence 2233322221 0112222322222 224566677777777776532211111 2346888899999999
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCC------ChhhHH
Q 038801 345 NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACG-----------CSV------GLGVYV 407 (662)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----------~~~------~~~~~~ 407 (662)
+.+.|..+|++..+..-..+.-=..+|-.-...=.+..+++.|.++.+....-- .++ +..+|+
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 999999999987542111111001122223333345567778888776653311 111 233555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHh-
Q 038801 408 PTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLK-GSYLTIMTGLME- 485 (662)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~- 485 (662)
..++.--..|-++....+|+++.+..+.......| ....+-.+..++++.++|++-+..-..|.. ..|+..+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 56666667788899999999998775442222222 222334556788888888776554334443 455655554443
Q ss_pred --cCCHHHHHHHHHHHhhCCCCccchh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC
Q 038801 486 --NHRPELMAAFLDEVVEDPRVEVKTH--DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQ 559 (662)
Q Consensus 486 --~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~ 559 (662)
..+++.|..+|++..+ +..|... .|-.....--+.|-...|+.++++... ++++.. ..||+.|.--...=.
T Consensus 561 ygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred hcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhC
Confidence 4468999999999998 5555432 222222222356888899999999765 356654 589988887666545
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcccHHHH---HHHHHHHHccCchHHHHHHHHHHHhC---CCCCCHHhHHHHHHHHhh
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIKFEHNLV---DAFLYALVKGGFFDAVMQVVEKSQEM---KVFVDKWKYKQAFMENHK 633 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~~~~~~~~ 633 (662)
+.....+|++.++ .-|+...- --+...-.+.|.++.|..++....+. ...++.|...-.+=..||
T Consensus 638 v~~TR~iYekaIe---------~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHG 708 (835)
T KOG2047|consen 638 VPRTREIYEKAIE---------SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHG 708 (835)
T ss_pred CcccHHHHHHHHH---------hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcC
Confidence 6667788888883 24444322 33334456899999999999887543 233668888888889999
Q ss_pred hhhhhHHHH
Q 038801 634 KLKVAKLRK 642 (662)
Q Consensus 634 ~~~~a~~~~ 642 (662)
+-+--+.++
T Consensus 709 nedT~keML 717 (835)
T KOG2047|consen 709 NEDTYKEML 717 (835)
T ss_pred CHHHHHHHH
Confidence 955444444
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.3e-09 Score=104.32 Aligned_cols=481 Identities=9% Similarity=-0.028 Sum_probs=294.3
Q ss_pred ChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccH
Q 038801 141 DFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNI 220 (662)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 220 (662)
+..-|..+++-+....++..|+-+-+++...+..|.+..+ +...+.-.|+++.|..+...-.- ...|.
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~---~aq~l~~~~~y~ra~~lit~~~l---------e~~d~ 82 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYW---LAQVLYLGRQYERAAHLITTYKL---------EKRDI 82 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHH---HHHHHHhhhHHHHHHHHHHHhhh---------hhhhH
Confidence 3344555666666666777777777777766544444332 33334346677777666555421 45566
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHH----HHHhc---------CCCCCccc----HHHHHH-------HHHHcCCHHHHH
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIE----TMSVL---------GVRPNESS----FGFLAY-------LYALKGLQEKIV 276 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~----~m~~~---------g~~p~~~t----~~~li~-------~~~~~g~~~~a~ 276 (662)
.+.......+.+. .++++|+.++. .+... -+.+|..- -+.-.+ .|......++|.
T Consensus 83 ~cryL~~~~l~~l-k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar 161 (611)
T KOG1173|consen 83 ACRYLAAKCLVKL-KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEAR 161 (611)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHH
Confidence 6666666667665 77888877776 22110 01111111 111112 223334456666
Q ss_pred HHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHH
Q 038801 277 ELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNME-QSDFSKETYCEVVKGF-LQNGNVKGLANLII 354 (662)
Q Consensus 277 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~~~~~~~li~~~-~~~~~~~~a~~~~~ 354 (662)
..|.+... .|...+.++...-.. . .-.+.+. ++.+...+.. -..-+....-.+-... ++..+- .....-.
T Consensus 162 ~~Y~~Al~----~D~~c~Ea~~~lvs~-~-mlt~~Ee-~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~ 233 (611)
T KOG1173|consen 162 DKYKEALL----ADAKCFEAFEKLVSA-H-MLTAQEE-FELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNE 233 (611)
T ss_pred HHHHHHHh----cchhhHHHHHHHHHH-H-hcchhHH-HHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCc
Confidence 66665544 333333333222111 1 1111111 1111111000 0000111111111110 000000 0000000
Q ss_pred HHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 038801 355 EAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGL 434 (662)
Q Consensus 355 ~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 434 (662)
+ ..-.+..-+......-..-|...+++.+..++.+.+.+.. ++....+..-|.++...|+.-+-..+=.+|++.
T Consensus 234 ~---~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-- 307 (611)
T KOG1173|consen 234 D---ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-- 307 (611)
T ss_pred h---hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--
Confidence 0 0002223344444445566667889999999999988875 667777777788888999888888888888876
Q ss_pred CC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHH
Q 038801 435 QL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN 513 (662)
Q Consensus 435 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 513 (662)
-| ...+|-++.--|...|+.++|.+.|.+....+ +.-...|..+...|.-.+..+.|...+....+-..-..-+..|
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY- 385 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY- 385 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH-
Confidence 44 56889999888888899999999999877654 2223578888888999999999988887766532211112234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHH
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAF 592 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 592 (662)
+.--|.+.++.+.|.+.|.+... +.|+ +..++-+.-.....+.+.+|..+|+.....++....... .-..+++-|
T Consensus 386 -lgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NL 461 (611)
T KOG1173|consen 386 -LGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNL 461 (611)
T ss_pred -HHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhH
Confidence 34457788999999999999885 5674 467777777777789999999999999866664432222 234678889
Q ss_pred HHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 038801 593 LYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
+.++.+.+++++|+..+++.....++ ++.+....-.....|+++.|...+-+++.+.|.+.+
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 99999999999999999999877665 566666555557779999999999999999998854
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8.3e-09 Score=97.97 Aligned_cols=343 Identities=11% Similarity=-0.025 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHH--HHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHH
Q 038801 122 LKRAFASVVYVIEKNPKLLDFQTVHTLLG--SMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLK 199 (662)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 199 (662)
....+..+...++.....-+.+.|..-+. .+...|..+.|+..|...+.. .|-....+.-|...+ .+.+.+..
T Consensus 142 ~~~~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~~~~ 216 (559)
T KOG1155|consen 142 INSELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEILSI 216 (559)
T ss_pred hhhHHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHHHHH
Confidence 33444444444444443333334433333 455778888899888887763 344444444443333 22222222
Q ss_pred HHHHHHHhhhhhhcCCCCc-cHHHHHH-HHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 038801 200 VFEECCRIALDENLDFMKP-NIYACNA-ALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVE 277 (662)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 277 (662)
+... ... +...-.. +..++-.- .+.++++.-.+.....|+.-+...-+....+.-...|+++|+.
T Consensus 217 l~~~------------l~~~~h~M~~~F~~~a~~el-~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s 283 (559)
T KOG1155|consen 217 LVVG------------LPSDMHWMKKFFLKKAYQEL-HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAES 283 (559)
T ss_pred HHhc------------CcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 2111 111 2221122 22344443 6788888888888888866555544444445557789999999
Q ss_pred HHHHHHhcCC--CCcHHhHHHHHHHHHhcCChh---hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038801 278 LESLMNEFGF--SSQMVFYSSLISGYVKLGNLE---SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANL 352 (662)
Q Consensus 278 ~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 352 (662)
+|+++.+... --|..+|+.++-. +..+-. -|..++ . +.. --+.|...+.+-|.-.++.++|...
T Consensus 284 ~Feei~knDPYRl~dmdlySN~LYv--~~~~skLs~LA~~v~-~-idK-------yR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 284 VFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSKLSYLAQNVS-N-IDK-------YRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred HHHHHHhcCCCcchhHHHHhHHHHH--HhhhHHHHHHHHHHH-H-hcc-------CCccceeeehhHHHHHHhHHHHHHH
Confidence 9999998741 1356777776643 333222 222221 1 111 1456777788888889999999999
Q ss_pred HHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 353 IIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 353 ~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
|++..++.+. ....|+.+..-|....+...|.+-++..++.. +.|-..|-.|..+|.-.+...-|+-.|++..+.
T Consensus 353 FkRALkLNp~----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 353 FKRALKLNPK----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred HHHHHhcCcc----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 9998764433 23345567788999999999999999999875 678889999999999999999999999999886
Q ss_pred CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038801 433 GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE 501 (662)
Q Consensus 433 g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 501 (662)
+| |...|.+|.++|.+.++.++|++.|+.....|-. +...+..|.+.|-+.++.++|...+.+.++
T Consensus 428 --kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 428 --KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred --CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55 8899999999999999999999999999988733 456899999999999999999999888765
No 55
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=6.1e-11 Score=117.52 Aligned_cols=282 Identities=12% Similarity=-0.019 Sum_probs=176.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCcHHhHHHHHHHHHhcCChhhHHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG--FSSQMVFYSSLISGYVKLGNLESASR 312 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 312 (662)
-+..+|+.+|+.+... +.-+.....-+-++|...+++++|+++|+.+.+.. ..-+..+|.+.+-.+-+.=....-
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L-- 409 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL-- 409 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH--
Confidence 3567788888885443 22233444456678888888888888888887753 123466777776554322111111
Q ss_pred HHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChHHHHHHH
Q 038801 313 TILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSDKAHSIL 391 (662)
Q Consensus 313 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~ 391 (662)
-.++++..+. .+.+|.++.++|.-+++.+.|++.|++..++ .| ...+|+.+..-+....++|.|...|
T Consensus 410 -aq~Li~~~~~-----sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-----dp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 410 -AQDLIDTDPN-----SPESWCALGNCFSLQKDHDTAIKCFKRAIQL-----DPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred -HHHHHhhCCC-----CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----CCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 1223333221 6778888888888888888888888876542 23 3455555555566667777777777
Q ss_pred HHHHHCCCCCChhhHHH---HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 392 DEMNACGCSVGLGVYVP---TLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 392 ~~m~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
+..+. .|...||+ +.-.|.|.++++.|+-.|++..+.+.. +.+....+...+.+.|+.|+|+++|++....+
T Consensus 479 r~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 479 RKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred Hhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 76653 34444444 456677788888888888777765322 55666667777777788888888888777665
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
+-++..-.--...+...+++++|...++++++- +.-+..+|-.+...|.+.|+.+.|+.-|.-+.+.
T Consensus 554 -~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 554 -PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred -CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 333334444455556666677777777776652 2223455666666777777777776666666653
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.1e-09 Score=102.24 Aligned_cols=286 Identities=10% Similarity=0.089 Sum_probs=193.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 038801 343 NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (662)
.|++.+|+++..+..+ .+-.| ...|..-..+.-..|+.+.+..++.+..+..-.++..++-+........|+++.|
T Consensus 97 eG~~~qAEkl~~rnae---~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAE---HGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhh---cCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 5777777777776544 22222 2334444566667778888888877777764456666777777777778888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhcCCHHHHHHH
Q 038801 423 TQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLK-------GSYLTIMTGLMENHRPELMAAF 495 (662)
Q Consensus 423 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~ 495 (662)
..-.+++.+.+.. +........++|.+.|++.+...++.+|.+.+.-.+. .+|..+++-....+..+.-...
T Consensus 173 ~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 173 RENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 8877777776433 5566677778888888888888888888877754432 4566666666666665655666
Q ss_pred HHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 496 LDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 496 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
++....+ .+-++..-.+++.-+.++|+.++|.++.++..+.+..|+. ...-.+.+-++...-++..++-.+
T Consensus 252 W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~--- 322 (400)
T COG3071 252 WKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLK--- 322 (400)
T ss_pred HHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHH---
Confidence 6666553 3334445567777788888888888888888877655551 222344556777666666666553
Q ss_pred ccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 576 TDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 576 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
..+..| ..+.+|...|.+.+.+.+|.++|+...+.++....+..+.......|+.+.|....+..+.
T Consensus 323 ---~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 323 ---QHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ---hCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 233333 6777788888888888888888887777777766777777777778888888877776663
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=2.6e-09 Score=99.77 Aligned_cols=291 Identities=13% Similarity=0.092 Sum_probs=189.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTI 314 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 314 (662)
|++.+|+++..+-.+.+-.| ...|.....+.-+.|+.+.+-.++.+.-+..-.++..++-+........|+...|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 88888888888877666333 33455555677788888888888888877633466666777777778888888887777
Q ss_pred HHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHH
Q 038801 315 LLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEM 394 (662)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 394 (662)
.+..+..+. .+........+|.+.|++.....++.+|.+ .+.--|.. +.++
T Consensus 177 ~~ll~~~pr-----~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k---a~~l~~~e-----------------~~~l---- 227 (400)
T COG3071 177 DQLLEMTPR-----HPEVLRLALRAYIRLGAWQALLAILPKLRK---AGLLSDEE-----------------AARL---- 227 (400)
T ss_pred HHHHHhCcC-----ChHHHHHHHHHHHHhccHHHHHHHHHHHHH---ccCCChHH-----------------HHHH----
Confidence 776665433 566667777777777777777777777665 33322210 0000
Q ss_pred HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc
Q 038801 395 NACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG 474 (662)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 474 (662)
...+|+.++.-....+..+.-...++....+ .+.+...-.+++.-+.+.|+.++|.++.++..+++..|.
T Consensus 228 -------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-- 297 (400)
T COG3071 228 -------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-- 297 (400)
T ss_pred -------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--
Confidence 0123444444444444444433444444332 233455555666666777777777777777776655444
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 554 (662)
....-.+.+.++.+.-++..++..+..+..| ..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+.+++
T Consensus 298 --L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~ 371 (400)
T COG3071 298 --LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADAL 371 (400)
T ss_pred --HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHH
Confidence 2223344555666666666666555555555 46788888888888888888888877764 78888888888888
Q ss_pred HhcCCHHHHHHHHHHHH
Q 038801 555 VTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 555 ~~~~~~~~a~~~~~~m~ 571 (662)
.+.|+..+|.++.++..
T Consensus 372 ~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 372 DQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHcCChHHHHHHHHHHH
Confidence 88888888888888777
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.38 E-value=1.4e-07 Score=93.64 Aligned_cols=429 Identities=12% Similarity=0.012 Sum_probs=267.4
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHh
Q 038801 152 MRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCC 231 (662)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 231 (662)
+...+++...+++.+.+++.... ...+....-+.++ ..|+-++|........+ +-..+.+.|..+--.+-
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~-~lg~~~ea~~~vr~glr--------~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLN-CLGKKEEAYELVRLGLR--------NDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhh-cccchHHHHHHHHHHhc--------cCcccchhHHHHHHHHh
Confidence 34556778888888888773322 2222222222333 46888888877776544 33455566765544444
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHH
Q 038801 232 YGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESAS 311 (662)
Q Consensus 232 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 311 (662)
. ..++++|++.|......+ +-|...+.-+--.-++.|+++........+.+.. +.....|..+..++.-.|+...|.
T Consensus 87 ~-dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 S-DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred h-hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4 488899999998887654 3345555555555567788887777777776653 233556777778888888999998
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHH-HHHHHHHhcCCh
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCEVV------KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF-GIISACVNLGLS 384 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~-~ll~~~~~~~~~ 384 (662)
.+..+..+... ..|+...|.... ......|..++|++.+..-. +...|...+. +-...+.+.+++
T Consensus 164 ~il~ef~~t~~---~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e-----~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 164 EILEEFEKTQN---TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE-----KQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHhhc---cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh-----hHHHHHHHHhhhHHHHHHHHhhH
Confidence 88777666532 234555444322 34556788888888876643 2223333333 345667888999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHc-CCCHHHHHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEAT-QLVMDISSSGLQLDVGNYDALIEASIT-SQDFQSAFSLFR 462 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~ 462 (662)
++|..++..++... +.+...|-.+..++.+-.+.-++. .+|....+. -|....-..+--.... ..-.+..-.++.
T Consensus 236 EeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 236 EEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred HhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHH
Confidence 99999999999885 444555555666665444444444 677666554 2221111111111122 223344556778
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh----C--------CC-Cccchhh--HHHHHHHHHhcCCHHH
Q 038801 463 DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE----D--------PR-VEVKTHD--WNSIIHAFCKAGRLED 527 (662)
Q Consensus 463 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~--------~~-~~p~~~~--~~~li~~~~~~g~~~~ 527 (662)
.+.+.|+|+. +..+...|-...+.+-.+++...+.. . .. -.|.... +-.++..|-+.|+++.
T Consensus 313 ~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 313 PLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 8888998764 44444444333332222222222221 1 00 1344443 4456788889999999
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHH
Q 038801 528 AKRTLRRMIFLQFEPNDQ-TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVM 606 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 606 (662)
|+..++..+++ .|+.+ .|..=.+.+.+.|++++|..++++.. +.+ .+|..+=..-..-..++.+.++|.
T Consensus 390 A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~-------elD-~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 390 ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ-------ELD-TADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hcc-chhHHHHHHHHHHHHHccccHHHH
Confidence 99999999975 78874 67777788999999999999999999 333 344443335555667889999999
Q ss_pred HHHHHHHhCCC
Q 038801 607 QVVEKSQEMKV 617 (662)
Q Consensus 607 ~~~~~m~~~~~ 617 (662)
+++....+.|.
T Consensus 460 ~~~skFTr~~~ 470 (700)
T KOG1156|consen 460 EVLSKFTREGF 470 (700)
T ss_pred HHHHHhhhccc
Confidence 99999988886
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.37 E-value=3.4e-08 Score=99.93 Aligned_cols=140 Identities=12% Similarity=0.099 Sum_probs=118.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NL 588 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~ 588 (662)
.|......+.+.+..++|...+.+.... .| ....|......+...|..++|.+.|.... .+.|+. .+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---------~ldP~hv~s 720 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---------ALDPDHVPS 720 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---------hcCCCCcHH
Confidence 4666777888899999999888888764 44 34577777777888899999999999888 677876 78
Q ss_pred HHHHHHHHHccCchHHHHH--HHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHhhhCCC
Q 038801 589 VDAFLYALVKGGFFDAVMQ--VVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNWAGLN 661 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~~~~~~~~ 661 (662)
..++...+.+.|+..-|.. ++.++.+.++. |+.|.++.......|+.+.|..-+....+||+.....+|.-|+
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs~ip 796 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFSNIP 796 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccccccC
Confidence 8899999999999887777 99999998886 8899999999999999999999999999999998888887665
No 60
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=9.5e-10 Score=103.38 Aligned_cols=200 Identities=16% Similarity=0.077 Sum_probs=119.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 482 (662)
...+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666655442 1134455555666666666666666666665543 2333445555555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 038801 483 LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYF 561 (662)
Q Consensus 483 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~ 561 (662)
+...|++++|.+.+++.............+..+..++...|++++|.+.+++..+. .| +...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 66666666666666665543221222344556666777777777777777777764 33 3456667777777777777
Q ss_pred HHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 562 SVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 562 ~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
+|...+++.. .. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQ-------QT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHH-------Hh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777777 22 122345555566666677777777777766643
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.32 E-value=8.1e-07 Score=88.44 Aligned_cols=460 Identities=14% Similarity=0.063 Sum_probs=283.1
Q ss_pred HhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCc
Q 038801 79 LLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTA 158 (662)
Q Consensus 79 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 158 (662)
-..+++...+.+.+.+.+.-+ -...+....--.+...|+. .++++.+..... +..-+...|..+.-.+....++
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~-eHgeslAmkGL~L~~lg~~---~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFP-EHGESLAMKGLTLNCLGKK---EEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCC-ccchhHHhccchhhcccch---HHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhH
Confidence 346777777777777776322 2333333333333444543 444444432222 3334445666677777778899
Q ss_pred hhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChh
Q 038801 159 APAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVS 238 (662)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 238 (662)
++|++.|...... .+++.....-|.-+-+..|+++..........+. .......|-.+..+.... |+..
T Consensus 92 ~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~-g~y~ 160 (700)
T KOG1156|consen 92 DEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLL-GEYK 160 (700)
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHH-HHHH
Confidence 9999999999874 4677766666666666778888888777777663 233445677777777776 9999
Q ss_pred HHHHHHHHHHhcC-CCCCcccHHHHH------HHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHH
Q 038801 239 DAEKVIETMSVLG-VRPNESSFGFLA------YLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESAS 311 (662)
Q Consensus 239 ~a~~~~~~m~~~g-~~p~~~t~~~li------~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 311 (662)
.|..+.++..+.. -.|+...|.... ......|..+.|.+.+..-... +.-....-..-.+.+.+.++.++|.
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 9999999997764 246666665443 2344677778777776654433 2122233344556788899999999
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHH-HHHHHHhcCCHHHHH-HHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHH
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCE-VVKGFLQNGNVKGLA-NLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHS 389 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 389 (662)
.+|...+... ||...|+. +..++.+-.+.-+++ .+|....+..+....|-....+.+ . ...-.+....
T Consensus 240 ~~y~~Ll~rn------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-~---~eel~~~vdk 309 (700)
T KOG1156|consen 240 KVYRRLLERN------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-N---GEELKEIVDK 309 (700)
T ss_pred HHHHHHHhhC------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-C---cchhHHHHHH
Confidence 9988888774 45555554 445554444444444 677766543333333322222211 1 1223344556
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CC----------CCCChh--hHHHHHHHHHcCCC
Q 038801 390 ILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS----SG----------LQLDVG--NYDALIEASITSQD 453 (662)
Q Consensus 390 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g----------~~~~~~--~~~~li~~~~~~g~ 453 (662)
++..+.+.|+++ ++..+...|-.-.+.+-.+++.-.+.. .| -.|... ++-.+++.|-+.|+
T Consensus 310 yL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 310 YLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 777788888654 333444433332222211222222211 11 134443 44556788889999
Q ss_pred HHHHHHHHHHHHHcCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 038801 454 FQSAFSLFRDMREARIYDL-KGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTL 532 (662)
Q Consensus 454 ~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (662)
++.|+.+++..+++ .|+ ...|..=.+.+...|.+++|..++++..+- -.+|...=+--..-..++.+.++|.++.
T Consensus 387 ~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 387 YEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 99999999998876 343 233444447889999999999999998763 2345433334555566889999999999
Q ss_pred HHHHhCCCCCCHH--------HHHHH--HHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 533 RRMIFLQFEPNDQ--------TYLSL--INGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 533 ~~m~~~~~~p~~~--------~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
......|. +.. .|-.+ ..+|.+.|++..|++-|..+...+.
T Consensus 463 skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 463 SKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99988774 322 22222 3467778888888888877765444
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=2.9e-12 Score=86.01 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=37.3
Q ss_pred ccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 038801 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL 268 (662)
Q Consensus 218 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 268 (662)
||+.+||++|++|++. |++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~-~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKA-GKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHC-cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 6777777777777776 7777777777777777777777777777777653
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=5.7e-12 Score=84.58 Aligned_cols=50 Identities=32% Similarity=0.602 Sum_probs=48.0
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 507 VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999975
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.27 E-value=2.6e-06 Score=84.68 Aligned_cols=437 Identities=11% Similarity=0.063 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHH
Q 038801 143 QTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYA 222 (662)
Q Consensus 143 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (662)
..+...+..+...|++..-...|+..+..-......-.....+.+....+-.+-+.+++.+..+ +.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---------~~P~~-- 171 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---------VAPEA-- 171 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---------cCHHH--
Confidence 4666677777888888888888888776433333334455667777777888888888888865 33433
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHhcC------CCCCcccHHHHHHHHHHcCCHHH---HHHHHHHHHhcCCCCc--H
Q 038801 223 CNAALEGCCYGLQSVSDAEKVIETMSVLG------VRPNESSFGFLAYLYALKGLQEK---IVELESLMNEFGFSSQ--M 291 (662)
Q Consensus 223 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~t~~~li~~~~~~g~~~~---a~~~~~~~~~~g~~~~--~ 291 (662)
-+-.|..+++. +++++|-+.+....... .+.+-..|.-+-+..++..+.-. ...+++.+.. .-+| .
T Consensus 172 ~eeyie~L~~~-d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g 248 (835)
T KOG2047|consen 172 REEYIEYLAKS-DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLG 248 (835)
T ss_pred HHHHHHHHHhc-cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHH
Confidence 56667777776 88888888887765321 13333344444444444433221 2233333322 2244 3
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHh----------------cCC------HHHH
Q 038801 292 VFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQ----------------NGN------VKGL 349 (662)
Q Consensus 292 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------------~~~------~~~a 349 (662)
..|++|.+-|.+.|.++.|..+|++.+..-. .+.-|..+-++|++ .|+ ++-.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~------tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTVM------TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe------ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 5688888888888888888888888877521 33334444333331 111 1222
Q ss_pred HHHHHHHHHhCCCCcccccchH-------HH-HHHHHHhcCChHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHHH
Q 038801 350 ANLIIEAQKLEPSGIVVDRSVG-------FG-IISACVNLGLSDKAHSILDEMNACGCSVG------LGVYVPTLKAYCK 415 (662)
Q Consensus 350 ~~~~~~m~~~~~~~~~~~~~~~-------~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~ 415 (662)
+..|+.+.. ...+-.|++.. .. +=..-+..|+..+-..+|.+..+. +.|- ...|..+.+.|-.
T Consensus 323 ~a~~e~lm~--rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 323 MARFESLMN--RRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHh--ccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 333333322 11111111111 00 111122345667777777777664 2222 2467888888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-----------C------Cccc
Q 038801 416 EHRTAEATQLVMDISSSGLQLD---VGNYDALIEASITSQDFQSAFSLFRDMREARIY-----------D------LKGS 475 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~------~~~~ 475 (662)
.|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|+++.+......-. + +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 9999999999999886533211 234444445555677888888887776543111 1 1123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH-DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLING 553 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~ 553 (662)
|..+++.--..|-++....+++++.+-.-..|.+. -|..+ +-...-++++.++|++-+..=-.|++ ..|+..+..
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 44444555556677777777777766433333321 12222 22344566777777666654334454 356666555
Q ss_pred HHh---cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHH--HHHHccCchHHHHHHHHHHH
Q 038801 554 YVT---AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFL--YALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 554 ~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~ 613 (662)
+.+ ....+.|..+|++.. + |.+|...-+-.|+ ..-.+-|-...|++++++..
T Consensus 557 fi~rygg~klEraRdLFEqaL-------~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQAL-------D-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHH-------h-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 554 245677777777777 3 5555542222222 22234566677777777654
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.5e-07 Score=84.61 Aligned_cols=305 Identities=10% Similarity=-0.024 Sum_probs=213.4
Q ss_pred HHHhcCCCCCcccHHHHHHHHHH--cCCHHHHHHHHHHHHhcC-CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCC
Q 038801 246 TMSVLGVRPNESSFGFLAYLYAL--KGLQEKIVELESLMNEFG-FSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGN 322 (662)
Q Consensus 246 ~m~~~g~~p~~~t~~~li~~~~~--~g~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 322 (662)
.|....+.|...+...-+.++++ .++...+.+.+-.+.... ++-|+.....+.+++...|+.++|...|++..--
T Consensus 184 ~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-- 261 (564)
T KOG1174|consen 184 VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-- 261 (564)
T ss_pred hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--
Confidence 44444556666666666666654 455566666665555443 5567888999999999999999999998766544
Q ss_pred CCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 038801 323 MEQSDFSKETYC---EVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC 399 (662)
Q Consensus 323 ~~~~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 399 (662)
|+.+.. ....-+.+.|+.+....+...+-.... -....|..-........+++.|..+-++.++..
T Consensus 262 ------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~- 330 (564)
T KOG1174|consen 262 ------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK----YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE- 330 (564)
T ss_pred ------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence 332222 222334577888887777776643211 122223333344456678888988888887764
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 038801 400 SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT 478 (662)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 478 (662)
+-+...|-.-...+...|+.++|.-.|...... .| +..+|.-|+.+|...|++.+|.-.-+...+. .+.+..+...
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL 407 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTL 407 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhh
Confidence 445556666667788899999999999988765 54 7889999999999999999998776665543 2334444444
Q ss_pred HH-HHHHh-cCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 479 IM-TGLME-NHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 479 ll-~~~~~-~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
+. ..|.- ..--++|.+++++..+. .|+ ....+.+...+...|..+.+..++++.... .||....+.|.+.+.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKI---NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMR 482 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhcc---CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHH
Confidence 42 33332 22347888888886653 444 345677778888999999999999998874 899999999999999
Q ss_pred hcCCHHHHHHHHHHHH
Q 038801 556 TAEQYFSVLMMWHEIK 571 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~ 571 (662)
..+.+++|+..|....
T Consensus 483 A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKAL 498 (564)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 9999999999999888
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=5e-09 Score=110.74 Aligned_cols=147 Identities=10% Similarity=-0.053 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHH
Q 038801 307 LESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDK 386 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 386 (662)
.++|...+.+.++..+. +...|..+...+...|++++|...|++..++.|. +...+..+...+...|++++
T Consensus 320 ~~~A~~~~~~Al~ldP~-----~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~G~~~e 390 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-----NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI----SADIKYYYGWNLFMAGQLEE 390 (553)
T ss_pred HHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHH
Confidence 34444444444443221 3344444444444444444444444444332111 11223333444444444444
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
|...+++..+.. +.+...+..++..+...|++++|...+++..+.. .| +...+..+..++...|+.++|...+.++
T Consensus 391 Ai~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 391 ALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 444444444432 1111122222223333444444444444443321 11 2222333444444444444444444443
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.7e-07 Score=86.12 Aligned_cols=460 Identities=11% Similarity=0.045 Sum_probs=258.0
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 038801 110 IAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICR 189 (662)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (662)
+.-+....++..+...++.-...-++.. - .+-.-+...+.+.|++++|+.++..+.+.. .++.....++ ...+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE--~--~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnL-Acc~F 102 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE--D--SLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNL-ACCKF 102 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh--H--HHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhH-HHHHH
Confidence 6666666666666666554321111111 1 122224555567777888887777777643 2333333332 22222
Q ss_pred cCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH-HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 038801 190 KNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA-LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL 268 (662)
Q Consensus 190 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 268 (662)
-.|.+.+|..+-.+. |+....+.+ +....+ .++-++-..+-+.+.+.- .---+|......
T Consensus 103 yLg~Y~eA~~~~~ka-------------~k~pL~~RLlfhlahk-lndEk~~~~fh~~LqD~~-----EdqLSLAsvhYm 163 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKA-------------PKTPLCIRLLFHLAHK-LNDEKRILTFHSSLQDTL-----EDQLSLASVHYM 163 (557)
T ss_pred HHHHHHHHHHHHhhC-------------CCChHHHHHHHHHHHH-hCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHH
Confidence 356666666655543 333333333 333333 366666665555554321 111223333333
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHH-HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHH
Q 038801 269 KGLQEKIVELESLMNEFGFSSQMVFYSSLI-SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVK 347 (662)
Q Consensus 269 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 347 (662)
.-.+.+|.+++......+ |+-...|.-+ -+|.+.+-++-+.+++.-.+...+. ++..-|.......+.-+-.
T Consensus 164 R~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-----StiA~NLkacn~fRl~ngr 236 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-----STIAKNLKACNLFRLINGR 236 (557)
T ss_pred HHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-----cHHHHHHHHHHHhhhhccc
Confidence 344677777777776654 5544444433 3455666666666655544544322 4445555444444433333
Q ss_pred HHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 038801 348 GLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL-----GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422 (662)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (662)
.|.+-..++.. ++.-. ...+.-.++. .+-+.|.+++--+.+. .|. .--.|+-.|.+.+++.+|
T Consensus 237 ~ae~E~k~lad----N~~~~----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 237 TAEDEKKELAD----NIDQE----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEA 304 (557)
T ss_pred hhHHHHHHHHh----ccccc----chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHH
Confidence 33333333322 11100 1122223332 2345666666555542 232 223355568889999999
Q ss_pred HHHHHHHHhCCCCCC-hhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCHHHHH
Q 038801 423 TQLVMDISSSGLQLD-VGNYDALIEASITSQ-------DFQSAFSLFRDMREARI-YDLKGSYLTIMTGLMENHRPELMA 493 (662)
Q Consensus 423 ~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~ 493 (662)
..+..++. |. ..-|-.-.-.++..| ...-|.+.|+-.-+.+. ..+..--.++...+.-..++++++
T Consensus 305 ~~L~Kdl~-----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 305 ISLCKDLD-----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred HHHHhhcC-----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 98877663 32 222221111222333 35556666666555554 344445666777777778899999
Q ss_pred HHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHH
Q 038801 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS-LINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 494 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
.+++.+..- -...|...| .+.++++..|++.+|+++|-++....++ |..+|.+ |.++|.+.++++.|-.++-.+.
T Consensus 380 ~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~- 455 (557)
T KOG3785|consen 380 TYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN- 455 (557)
T ss_pred HHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC-
Confidence 999888763 333344444 4778999999999999999888754443 4566654 5667888899998866554333
Q ss_pred hhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 038801 573 KISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMEN 631 (662)
Q Consensus 573 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~ 631 (662)
-..+. .....+..-|.+++.+--|-+.|+.+...++.|..|.-..++|..
T Consensus 456 ---------t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 456 ---------TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACAG 506 (557)
T ss_pred ---------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHHH
Confidence 33333 344555667999999999999999999999999999988888864
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=6.5e-09 Score=109.89 Aligned_cols=147 Identities=7% Similarity=-0.132 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFR 462 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (662)
+++|...+++..+.+ +.+...+..+..++...|++++|...|++..+. .| +...+..+..++...|++++|...++
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445555555555443 334444445555555555555555555555544 22 23344444555555555555555555
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 463 DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 463 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
+..+.+ |.+...+..++..+...|++++|...+.+..+.. .| +...+..+..+|...|+.++|.+.++++.
T Consensus 397 ~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 397 ECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 555443 1111122222333334444555555544443321 11 12223334444444555555555554443
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=7.4e-09 Score=97.29 Aligned_cols=194 Identities=9% Similarity=0.020 Sum_probs=117.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
.+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...+...|
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g 113 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQG 113 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcc
Confidence 34444455555555555555554432 23344555555566666666666666665555421 13345555556666666
Q ss_pred CHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 038801 453 DFQSAFSLFRDMREARI-YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 453 ~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
++++|...+++..+... +.....+..+...+...|+.++|...+++.....+ .+...+..+...+...|++++|...
T Consensus 114 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 114 KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP--QRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666654321 12223455556666667777777777776665322 1344677777888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 532 LRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 532 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+++..+. ...+...+..+...+...|+.++|..+++.+.
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888775 23345666677777777888888888877766
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=8.3e-09 Score=103.71 Aligned_cols=242 Identities=13% Similarity=0.106 Sum_probs=169.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-C
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNAC-----GC-SVGL-GVYVPTLKAYCKEHRTAEATQLVMDISSS-----GL-Q 435 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 435 (662)
.+...+...|...|+++.|+.+++..++. |. .|.. ...+.+...|...+++++|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666777777777777777665543 21 1222 23334666778888888888888887543 21 2
Q ss_pred C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-----CC-CCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhC----C
Q 038801 436 L-DVGNYDALIEASITSQDFQSAFSLFRDMREA-----RI-YDL-KGSYLTIMTGLMENHRPELMAAFLDEVVED----P 503 (662)
Q Consensus 436 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~ 503 (662)
| -..+++.|..+|.+.|++++|..++++..+- +. .+. ...++.+...|+..+++++|..++.+..+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2356777777888888888888877765531 11 122 234566667788888899888888775442 1
Q ss_pred CCc-cc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 504 RVE-VK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFL------QFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 504 ~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
+.. +. ..+|+.|...|...|++++|.+++++.+.. +..+. ...++.|...|.+.+++.+|.++|.+...+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 11 357999999999999999999999998862 11222 3578899999999999999999999988776
Q ss_pred cccCCCCC-cccH-HHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 575 STDGQKGI-KFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 575 ~~~~~~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+ ..|. .|+. .+|.-|...|.+.|+++.|.++.+...
T Consensus 440 ~---~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 K---LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred H---HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 2332 3444 788999999999999999999998874
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.21 E-value=1.1e-09 Score=98.97 Aligned_cols=232 Identities=10% Similarity=-0.025 Sum_probs=124.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 486 (662)
+.+.++|.+.|.+.+|++.|+.-.+. .|-+.||..|-.+|.+.++++.|+.+|.+-.+.- |-++.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 44555666666666666666555554 4455555555666666666666666665555542 33333333344455555
Q ss_pred CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038801 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMM 566 (662)
Q Consensus 487 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 566 (662)
++.++|.++++...+..+. ++....++...|.-.++.|-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~~~--nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI--NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc--cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 5666666666665553222 3333444455555556666666666666666543 455566666666666666666666
Q ss_pred HHHHHHhhcccCCCCCcccH--HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHhhhhhhhHHHHH
Q 038801 567 WHEIKRKISTDGQKGIKFEH--NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD-KWKYKQAFMENHKKLKVAKLRKR 643 (662)
Q Consensus 567 ~~~m~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~~~~~~~~~~~~a~~~~~ 643 (662)
|++.. ..--.|+. .+|..|.....-.|++..|.+.|+-+...+.... .+..+.......|+++.|+.++.
T Consensus 381 f~RAl-------stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 381 FQRAL-------STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHH-------hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 66655 22222332 3444555555556666666666666555444432 33333333344566666666665
Q ss_pred HHHhhHHH
Q 038801 644 NFKKMEAL 651 (662)
Q Consensus 644 ~~~~l~p~ 651 (662)
.+..+.|.
T Consensus 454 ~A~s~~P~ 461 (478)
T KOG1129|consen 454 AAKSVMPD 461 (478)
T ss_pred HhhhhCcc
Confidence 55555443
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=6.6e-08 Score=98.58 Aligned_cols=291 Identities=11% Similarity=0.069 Sum_probs=202.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG-FGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYC 414 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 414 (662)
....+...|++++|++.+++-. ...+|...+ ......+.+.|+.++|..++..+++++ +.|..-|..+..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~-----~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNE-----KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhh-----hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 3455678899999999997743 334454444 456788889999999999999999987 556666666666663
Q ss_pred Hc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH-HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 415 KE-----HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ-SAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 415 ~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
-. ...+...++|+++... -|.......+.-.+.....+. .+..++..+..+|+|+ +|+.|-..|....+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 33 2577788899988776 344444433333333323333 4556777888888755 56666666776666
Q ss_pred HHHHHHHHHHHhhCC-------------CCccchh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 038801 489 PELMAAFLDEVVEDP-------------RVEVKTH--DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLIN 552 (662)
Q Consensus 489 ~~~a~~~~~~~~~~~-------------~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~ 552 (662)
.+....++....... .-.|... ++.-+...|-..|++++|++.+++.+++ .|+. ..|..-.+
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar 236 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence 666666666654321 1123333 4455677888999999999999999986 6775 68888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC--------HHhH
Q 038801 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD--------KWKY 624 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------~~~~ 624 (662)
.+-+.|++.+|.+.++..+ ..+. -|..+=+-....+.++|++++|.+++......+..|. .|..
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar-------~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEAR-------ELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHCCCHHHHHHHHHHHH-------hCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 9999999999999999999 3332 2555556667778899999999999999877665432 2333
Q ss_pred H--HHHHHHhhhhhhhHHHHHHHHh
Q 038801 625 K--QAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 625 ~--~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
+ ...+...|++..|.+.+..+.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 5566667888888776655554
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=1.4e-08 Score=102.06 Aligned_cols=245 Identities=11% Similarity=0.093 Sum_probs=181.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCChh-hHHHHHHHHHcCCCHHHHHHHHHHHHHc-----C--
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSS-----GL-QLDVG-NYDALIEASITSQDFQSAFSLFRDMREA-----R-- 468 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-- 468 (662)
..+...+...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++..- |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666899999999999999999887654 21 23333 3344677889999999999999998752 2
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-ccch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC---C
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED----PRV-EVKT-HDWNSIIHAFCKAGRLEDAKRTLRRMIFL---Q 539 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 539 (662)
.+....+++.|...|.+.|++++|..++++..+- .+. .|.+ ..++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2334467788888999999999998888875431 122 2222 34677778889999999999999877652 1
Q ss_pred CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH---
Q 038801 540 FEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS--- 612 (662)
Q Consensus 540 ~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m--- 612 (662)
+.++. .+|+.|...|.+.|++++|.++++++..+..+.......-....++.|...|.+.+++.+|.++|.+.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 22322 58999999999999999999999999977664422222223467888999999999999999998775
Q ss_pred -HhCCCC-CC---HHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 613 -QEMKVF-VD---KWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 613 -~~~~~~-p~---~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
+..|+. |+ .+..+...+...|++|.|.++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344554 55 344446677888999999999888774
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=8.3e-07 Score=90.69 Aligned_cols=297 Identities=13% Similarity=0.022 Sum_probs=202.6
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHH
Q 038801 148 LLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAAL 227 (662)
Q Consensus 148 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 227 (662)
....+...|++++|+..++.-.+ ...+...+.......+.+.|+.++|..++..+.. ..|+...|-..+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~---------rNPdn~~Yy~~L 78 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELID---------RNPDNYDYYRGL 78 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------HCCCcHHHHHHH
Confidence 45667888999999999987654 3567778888889999999999999999999987 466666655555
Q ss_pred HHHh-cc----CCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCcHHhHHHHHHHH
Q 038801 228 EGCC-YG----LQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQ-EKIVELESLMNEFGFSSQMVFYSSLISGY 301 (662)
Q Consensus 228 ~~~~-~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 301 (662)
..+. .. ..+.+...++|+++... -|.......+.-.+.....+ ..+..++..+...|+++ +++.|-..|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly 153 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLY 153 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHH
Confidence 4443 21 13567788899988664 35544444333222222222 35566777778888633 456666667
Q ss_pred HhcCChhhHHHHHHHHHcCCCCC----------CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc-c
Q 038801 302 VKLGNLESASRTILLCLGGGNME----------QSDFSKE--TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD-R 368 (662)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~----------~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~ 368 (662)
....+.+-..+++.......... .-.|+.. ++.-+...|-..|++++|++++++... ..|+ .
T Consensus 154 ~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~-----htPt~~ 228 (517)
T PF12569_consen 154 KDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE-----HTPTLV 228 (517)
T ss_pred cChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCcH
Confidence 65555555666655554432111 1234443 345667778889999999999998765 2343 3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh--------
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN-------- 440 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-------- 440 (662)
..|..-...+-+.|++.+|.+.++.....+ .-|..+=+-.+..+.++|+.++|.+++......+..|-...
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 345566778888999999999999888876 45667777778888899999999999988887765332211
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
......+|.+.|++..|++.|..+.+
T Consensus 308 ~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 308 ETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 13345678888888888888777665
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=3.3e-07 Score=84.19 Aligned_cols=445 Identities=10% Similarity=0.024 Sum_probs=201.2
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHH-HHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNS-LIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMR 153 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (662)
+..+....++..|+.+++.-...+-.-. ...+. +..++...|+++++...+..+ +.+ ..++....-.|.-.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~---~~~--~~~~~el~vnLAcc~F 102 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFL---MNK--DDAPAELGVNLACCKF 102 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHH---hcc--CCCCcccchhHHHHHH
Confidence 4455556677777777666553332211 12333 333444556655555544433 332 2233344444444445
Q ss_pred hcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhcc
Q 038801 154 NANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYG 233 (662)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 233 (662)
-.|.+.+|..+-... |.+.....+|.++..+.++-++-..+-+.+.. ..-|.. ++.+.....
T Consensus 103 yLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD---------~~EdqL---SLAsvhYmR 164 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD---------TLEDQL---SLASVHYMR 164 (557)
T ss_pred HHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---------hHHHHH---hHHHHHHHH
Confidence 556666666654443 33344455666666666666665555554432 111111 122222222
Q ss_pred CCChhHHHHHHHHHHhcCCCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHH
Q 038801 234 LQSVSDAEKVIETMSVLGVRPNESSFGFLAY-LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASR 312 (662)
Q Consensus 234 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 312 (662)
-.+++|+++|...... .|+-...|.-+. +|.+..-++-+.++++-..+. ++-+....|.......+.-.-..|.+
T Consensus 165 -~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 165 -MHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred -HHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 4566777777776644 244444444332 344556666666666655543 22223344443333333212122222
Q ss_pred HHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHH
Q 038801 313 TILLCLGGGNMEQSDFSKETYCEVVKGFLQN-----GNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKA 387 (662)
Q Consensus 313 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 387 (662)
-..+..+.... .| -.+.-+++. .+-+.|++++-.+.+ +.|.. -..++--|.+.+++.+|
T Consensus 241 E~k~ladN~~~--------~~-~f~~~l~rHNLVvFrngEgALqVLP~L~~-----~IPEA--RlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 241 EKKELADNIDQ--------EY-PFIEYLCRHNLVVFRNGEGALQVLPSLMK-----HIPEA--RLNLIIYYLNQNDVQEA 304 (557)
T ss_pred HHHHHHhcccc--------cc-hhHHHHHHcCeEEEeCCccHHHhchHHHh-----hChHh--hhhheeeecccccHHHH
Confidence 22333332110 00 111222222 233445555444322 11111 11233334455555555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHH-----HcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcCCCHHHHHHHH
Q 038801 388 HSILDEMNACGCSVGLGVYVPTLKAYC-----KEHRTAEATQLVMDISSSGLQLDV-GNYDALIEASITSQDFQSAFSLF 461 (662)
Q Consensus 388 ~~~~~~m~~~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~ 461 (662)
..+.+.+.- ..|-......++.+-. ....+.-|...|+-.-..+..-|. .--.++..++.-..++|+++..+
T Consensus 305 ~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 305 ISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred HHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 555555433 2343333333332221 122344444455444443333222 22333444444455566666665
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 462 RDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN-SIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
+.+...-...|. .-..+.++.+..|.+.+|+++|-.+... .++ |..+|. .|.++|.+.++.+.|.+++-++-.
T Consensus 383 nSi~sYF~NdD~-Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--- 456 (557)
T KOG3785|consen 383 NSIESYFTNDDD-FNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT--- 456 (557)
T ss_pred HHHHHHhcCcch-hhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---
Confidence 555544333332 2233556666666666666666555431 222 233443 344566677777766666554431
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 541 EPNDQ-TYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 541 ~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
..+.. ....+...|.+.+.+--|-+.|+++.
T Consensus 457 ~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 457 PSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 11222 33344455666666666666666666
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.2e-06 Score=82.37 Aligned_cols=296 Identities=9% Similarity=-0.080 Sum_probs=185.3
Q ss_pred HHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHH
Q 038801 150 GSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEG 229 (662)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (662)
.+.+..++...|...+--+......+++......+...+...|+.++|+..|++... ..|+..+---+-..
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---------~dpy~i~~MD~Ya~ 274 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---------ANPDNVEAMDLYAV 274 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---------CChhhhhhHHHHHH
Confidence 334455666666666666666666777777777788888888888888888888754 55655432222222
Q ss_pred HhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhh
Q 038801 230 CCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 309 (662)
+....|+.+....+...+.... +-+...|..-....-...+++.|..+-++..+.+ +-+...|-.-...+...|+.++
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQ 352 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHH
Confidence 2222377777777766665321 1222223333334445667777777777766653 2334444444456667788888
Q ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHH-HHHH-hcCChHHH
Q 038801 310 ASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGII-SACV-NLGLSDKA 387 (662)
Q Consensus 310 A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a 387 (662)
|.-.|.....-.+. +...|.-|+.+|...|.+.+|.-+-+...+ -+..+..+...+. ..|. ...--++|
T Consensus 353 A~IaFR~Aq~Lap~-----rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~----~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 353 AVIAFRTAQMLAPY-----RLEIYRGLFHSYLAQKRFKEANALANWTIR----LFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred HHHHHHHHHhcchh-----hHHHHHHHHHHHHhhchHHHHHHHHHHHHH----HhhcchhhhhhhcceeeccCchhHHHH
Confidence 77776665544322 677888888888888888887776655433 1222333333221 1221 22234677
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 388 HSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 388 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
.++++.-++.. +.-....+.+...+...|+.+++..+++.-... .||....+.|.+.+...+.+++|++.|......
T Consensus 424 Kkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 77777766643 223455666677777888888888888887765 678888888888888888888888888877765
Q ss_pred C
Q 038801 468 R 468 (662)
Q Consensus 468 ~ 468 (662)
+
T Consensus 501 d 501 (564)
T KOG1174|consen 501 D 501 (564)
T ss_pred C
Confidence 4
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.3e-08 Score=92.20 Aligned_cols=230 Identities=10% Similarity=0.074 Sum_probs=193.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHcC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNY-DALIEASITS 451 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~~ 451 (662)
.+..+|.+.|.+.+|++.++..++. .|-+.||-.|-++|.+..+...|+.+|.+-.+. .|..+|| .-+...+-..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 4889999999999999999998886 466678889999999999999999999998876 5655554 4566778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
++.++|.++|+...+.. +.++.....+..+|.-.++++.|..++.++..- |+. +...|+.+.-+|.-.+++|-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998875 667778888888999999999999999999885 554 456788898899999999999999
Q ss_pred HHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHH
Q 038801 532 LRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQV 608 (662)
Q Consensus 532 ~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
|++....-..|+. ..|-.|.......||+..|.+.|+-.. . ..++. ..++.|...-.+.|++++|..+
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL-------~--~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL-------T--SDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh-------c--cCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 9999987656665 478888888888999999999999888 2 33443 7888888888899999999999
Q ss_pred HHHHHhCCCC
Q 038801 609 VEKSQEMKVF 618 (662)
Q Consensus 609 ~~~m~~~~~~ 618 (662)
++...+..+.
T Consensus 452 l~~A~s~~P~ 461 (478)
T KOG1129|consen 452 LNAAKSVMPD 461 (478)
T ss_pred HHHhhhhCcc
Confidence 9998765544
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=3.6e-06 Score=83.09 Aligned_cols=452 Identities=10% Similarity=-0.002 Sum_probs=239.6
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
+=++.+...|++++|+.....+...+ |++......=+-...+.+.+++|+++.+.- +-..++|..
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~-------------~~~~~~~~~ 81 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKN-------------GALLVINSF 81 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc-------------chhhhcchh
Confidence 34556667778888888888887754 444333222222334678888888665542 111222222
Q ss_pred --HHHH--hccCCChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHH
Q 038801 227 --LEGC--CYGLQSVSDAEKVIETMSVLGVRPNES-SFGFLAYLYALKGLQEKIVELESLMNEFGFSS-QMVFYSSLISG 300 (662)
Q Consensus 227 --l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~ 300 (662)
=.+| .+ .+..++|+..++ |..++.. +...-...|.+.|++++|.++|+.+.+.+..- +...-..++.+
T Consensus 82 ~fEKAYc~Yr-lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 82 FFEKAYCEYR-LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred hHHHHHHHHH-cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 2233 33 388888888887 3344443 44444567778899999999999998776321 12222222221
Q ss_pred HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHhCCCC----------cccc
Q 038801 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYC---EVVKGFLQNGNVKGLANLIIEAQKLEPSG----------IVVD 367 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~----------~~~~ 367 (662)
- ..-.+. +.+.... .| ..+|. .....+...|++.+|+++++...++-... +.-+
T Consensus 156 ~----a~l~~~--~~q~v~~------v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~e 222 (652)
T KOG2376|consen 156 A----AALQVQ--LLQSVPE------VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEE 222 (652)
T ss_pred H----HhhhHH--HHHhccC------CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHH
Confidence 1 111111 1222222 12 22333 23445667899999999998873211111 1111
Q ss_pred cchHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH---HHHHcCC-HH-HHHHHHHHHHhCCC-------
Q 038801 368 RSVGF-GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK---AYCKEHR-TA-EATQLVMDISSSGL------- 434 (662)
Q Consensus 368 ~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~---~~~~~g~-~~-~A~~~~~~m~~~g~------- 434 (662)
..+.. -+.-++-..|+-++|..++...++.. .+|........+ ++..-.+ .+ .++..++.......
T Consensus 223 l~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 223 LNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 11111 24455667899999999999998886 344422222211 1111111 11 12222222111100
Q ss_pred ---CCChhhH-HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCccc
Q 038801 435 ---QLDVGNY-DALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME--NHRPELMAAFLDEVVEDPRVEVK 508 (662)
Q Consensus 435 ---~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p~ 508 (662)
+...... +.++..|. +..+.+.++-..... ..|. ..+.+++..+.+ ......+.+++....+..+.. .
T Consensus 302 s~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~-s 375 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFT--NKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEK-S 375 (652)
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCch-h
Confidence 0011112 22222222 233444433332211 1222 345555554433 234677788887777653332 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLR--------RMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK 580 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 580 (662)
..+.-.++......|+++.|.+++. ...+.+..|-.+ ..+...+.+.++-+.|..++++...+.....
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~-- 451 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQ-- 451 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhc--
Confidence 3455667788889999999999999 666666666554 4455666777777788888888876555321
Q ss_pred CCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHH
Q 038801 581 GIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRN 644 (662)
Q Consensus 581 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~ 644 (662)
.-.+.. .++..+...-.+.|+-++|...++++.+.++. .+....+..+ ...-|.+.|..+.++
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a-~~~~d~eka~~l~k~ 516 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTA-YARLDPEKAESLSKK 516 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHH-HHhcCHHHHHHHhhc
Confidence 111222 44555555566889999999999999774433 2233222222 222355555554443
No 79
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.7e-05 Score=77.05 Aligned_cols=454 Identities=12% Similarity=0.083 Sum_probs=252.0
Q ss_pred HHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 038801 73 TNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSM 152 (662)
Q Consensus 73 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (662)
+-+..+...+++++|.....++...++. +...+..-+-+++..++++++.. ..+..+.......|. +=++|
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk-------~ikk~~~~~~~~~~~-fEKAY 87 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALK-------LIKKNGALLVINSFF-FEKAY 87 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHH-------HHHhcchhhhcchhh-HHHHH
Confidence 3455667789999999999999886633 34445555556666665433332 223433221111221 23444
Q ss_pred --HhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHH
Q 038801 153 --RNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGC 230 (662)
Q Consensus 153 --~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 230 (662)
.+.+..++|+..++ +..+.+.....+-...+.+.|++++|.++|+.+.+ .+...+..-+.+-
T Consensus 88 c~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-----------n~~dd~d~~~r~n 151 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-----------NNSDDQDEERRAN 151 (652)
T ss_pred HHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----------cCCchHHHHHHHH
Confidence 48899999999888 33334444455556677799999999999999854 2222232222221
Q ss_pred hccCCChhHHHHHHHHHHhcCCCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHhcC-------CCCcH-------Hh
Q 038801 231 CYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY---LYALKGLQEKIVELESLMNEFG-------FSSQM-------VF 293 (662)
Q Consensus 231 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~---~~~~~g~~~~a~~~~~~~~~~g-------~~~~~-------~~ 293 (662)
+...+....+. .|......| ..+|..+.+ .+...|++.+|+++++...+.+ -.-+. .+
T Consensus 152 l~a~~a~l~~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 152 LLAVAAALQVQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HHHHHHhhhHH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 11101111111 233333333 446666654 4456899999999999884322 00111 11
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHH----HHHHHHHHHhcCCHH-HHHHHHHHHHHhCCC------
Q 038801 294 YSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET----YCEVVKGFLQNGNVK-GLANLIIEAQKLEPS------ 362 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~----~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~------ 362 (662)
---|.-.+-..|+..+|..+|...++.... |... -|.|+..-....-++ .++..++....-...
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-----D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNPA-----DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcCC-----CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 223445667889999999999998887532 3322 222222211111111 122222221100000
Q ss_pred -CcccccchHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCh
Q 038801 363 -GIVVDRSVGF-GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK--EHRTAEATQLVMDISSSGLQLDV 438 (662)
Q Consensus 363 -~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~ 438 (662)
.-.-.....+ .++..+. +..+.+.++...+. +..|. ..+.+++....+ .....++.+++...-+....-..
T Consensus 302 s~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~ 376 (652)
T KOG2376|consen 302 SKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSK 376 (652)
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhH
Confidence 0000001111 1222222 22233333322211 12233 334444433332 33577888888888776322234
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHH--------HHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc
Q 038801 439 GNYDALIEASITSQDFQSAFSLFR--------DMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED----PRVE 506 (662)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~ 506 (662)
...-.+++.....|+++.|.+++. .+.+.+..| .+...+...+.+.++.+.|..++++...- ....
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 566677788899999999999999 555555555 46777777888888777777777665431 1111
Q ss_pred cc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 507 VK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 507 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
+. ..++..+...-.+.|+.++|..+++++.+.. .+|..+...++.+|++. +.+.|..+-..+
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 11 1233444444567899999999999999853 56778999999999884 577777664433
No 80
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=9.1e-06 Score=83.07 Aligned_cols=234 Identities=12% Similarity=0.105 Sum_probs=137.9
Q ss_pred HHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHH-----HHhCCCCCChHHHHHHHHHH
Q 038801 78 SLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYV-----IEKNPKLLDFQTVHTLLGSM 152 (662)
Q Consensus 78 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ll~~~ 152 (662)
|+.-|+.+.|.+-.+.++ +...|..+.+.|.+..+.+-+.-.+..+... ++.....++ .+-..+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 444677777777666653 4556888888888877665555444332211 111111121 2222233344
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhc
Q 038801 153 RNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCY 232 (662)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 232 (662)
...|..++|+.++.+-++ +.+|-.+|-..|.+++|.++-+.=-+ +.-. .||...-.-+-.
T Consensus 811 ieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DR---------iHLr-~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDR---------IHLR-NTYYNYAKYLEA 870 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccc---------eehh-hhHHHHHHHHHh
Confidence 577888888888888877 45677778788888888887665322 2222 233333333333
Q ss_pred cCCChhHHHHHHHHHH----------hcC---------CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHh
Q 038801 233 GLQSVSDAEKVIETMS----------VLG---------VRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVF 293 (662)
Q Consensus 233 ~~~~~~~a~~~~~~m~----------~~g---------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 293 (662)
. ++.+.|++.|++-. ... -.-|...|..--.-+-..|+.+.|+.+|....+
T Consensus 871 r-~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 871 R-RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred h-ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 3 88888888777532 110 011122222222223345677777777766544
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 294 YSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQK 358 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 358 (662)
|-.+++..|-.|+.++|-++-++. + |......+.+.|-..|++.+|..+|.+.+.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es---g-------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES---G-------DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc---c-------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 445666677788888887763221 1 666777788888888999998888877654
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=4e-07 Score=79.08 Aligned_cols=196 Identities=14% Similarity=0.047 Sum_probs=124.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 484 (662)
+..|.-.|...|+...|..-+++..+. .| +..+|..+...|.+.|+.+.|.+-|++..... |.+..+.|....-+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 334455666777777777777776665 33 34566666667777777777777777766654 444455666666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 038801 485 ENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSV 563 (662)
Q Consensus 485 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a 563 (662)
..|++++|...|++...+....--..+|..+.-+..+.|+.+.|.+.|++.++. .|+. .+...+.....+.|++..|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 666666666666666665332223446666776777777777777777777764 3433 4566666666777777777
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 564 LMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 564 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
..+++... ..+. ++.......|+.--+.|+.+.|.++=..+..
T Consensus 193 r~~~~~~~-------~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQ-------QRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHH-------hccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777766 3443 6666666666666667777766666555543
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=1.1e-05 Score=82.41 Aligned_cols=460 Identities=11% Similarity=-0.017 Sum_probs=267.2
Q ss_pred HHhhCChhHHHHH----HHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 038801 78 SLLTNNTDEAWKS----FKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMR 153 (662)
Q Consensus 78 ~~~~~~~~~A~~~----~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 153 (662)
+.-+.+..++.-. +.++....+.-++..|..+.-++...|+...+.+.|+.... ...-..+.|..+...+.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-----~~~~~~e~w~~~als~s 368 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-----FSFGEHERWYQLALSYS 368 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHH
Confidence 4445566666544 34444445667899999999999999998888888887632 23344567888999999
Q ss_pred hcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhc-CCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhc
Q 038801 154 NANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRK-NSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCY 232 (662)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 232 (662)
..|.-..|+.+++.-......|++.......-..|.+ .+.+++++..-.++...... ....+.|-.. -.+--+|..
T Consensus 369 aag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~-~~~~l~~~~~--l~lGi~y~~ 445 (799)
T KOG4162|consen 369 AAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG-QRSHLKPRGY--LFLGIAYGF 445 (799)
T ss_pred HhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh-hhhhhhhhHH--HHHHHHHHh
Confidence 9999999999999887755446666666666666653 35666666666555542211 1111222222 211111111
Q ss_pred c----------CCChhHHHHHHHHHHhcC-CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHH
Q 038801 233 G----------LQSVSDAEKVIETMSVLG-VRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGY 301 (662)
Q Consensus 233 ~----------~~~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 301 (662)
. .....++++.+++..+.+ -.|+...| +---|+..++++.|.+...+..+.+-.-+...|..|.-.+
T Consensus 446 ~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvl 523 (799)
T KOG4162|consen 446 QARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVL 523 (799)
T ss_pred HhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 1 012345777777776654 23333333 3335667788999999999988886567788888888888
Q ss_pred HhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc
Q 038801 302 VKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL 381 (662)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (662)
...+++.+|+.++...+.+.+. |-..-..-+..-..-++.++++.....+..+.... ......
T Consensus 524 Sa~kr~~~Al~vvd~al~E~~~-----N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~------------~~~q~~ 586 (799)
T KOG4162|consen 524 SAQKRLKEALDVVDAALEEFGD-----NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAE------------YGVQQT 586 (799)
T ss_pred hhhhhhHHHHHHHHHHHHHhhh-----hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhh------------hhHhhh
Confidence 8889999999998888877422 11111111222223556666665555544321100 000001
Q ss_pred CChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC------hhhHHHHHHHHHcC
Q 038801 382 GLSDKAHSILDEMNAC--GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ--LD------VGNYDALIEASITS 451 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~------~~~~~~li~~~~~~ 451 (662)
++-....+....+.-. .......++.-+.......+....-... +...-+. |+ ...|......+.+.
T Consensus 587 ~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~ 663 (799)
T KOG4162|consen 587 LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLS 663 (799)
T ss_pred hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 1111111111111100 0011112222222211111100000000 1111111 12 22455666677777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 530 (662)
+..++|...+.+..... +.....|......+...|..++|.+.|.....- .|+ +..-.++..++.+.|+..-|..
T Consensus 664 ~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l---dP~hv~s~~Ala~~lle~G~~~la~~ 739 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL---DPDHVPSMTALAELLLELGSPRLAEK 739 (799)
T ss_pred CCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHhCCcchHHH
Confidence 88888877777766654 444456666667777788888888777776552 333 4467788888888888777777
Q ss_pred --HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 531 --TLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 531 --~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
++.++.+.+ .-+...|-.+...+-+.|+.++|.+.|+...+
T Consensus 740 ~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 740 RSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 888888753 22557888888888888888888888887653
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.7e-06 Score=83.17 Aligned_cols=389 Identities=14% Similarity=0.097 Sum_probs=242.0
Q ss_pred HhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCChh
Q 038801 230 CCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ-MVFYSSLISGYVKLGNLE 308 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 308 (662)
.+.. |+++.|+..|-+..... ++|..-|..=..+|+..|++++|.+=-.+-.+ +.|+ ...|+.+..++.-.|+++
T Consensus 12 a~s~-~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 12 AFSS-GDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hccc-ccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 3444 99999999999988765 45777788888899999999988776655555 4577 567999999999999999
Q ss_pred hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHhCCCCcccccchHHHHHHHHHhc-
Q 038801 309 SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLI------IEAQKLEPSGIVVDRSVGFGIISACVNL- 381 (662)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~------~~m~~~~~~~~~~~~~~~~~ll~~~~~~- 381 (662)
+|+..|.+-++..+. +...++-+..++.-.. . +.+.| .................|..++...-+.
T Consensus 88 eA~~ay~~GL~~d~~-----n~~L~~gl~~a~~~~~--~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-----NKQLKTGLAQAYLEDY--A-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HHHHHHHHHhhcCCc-----hHHHHHhHHHhhhHHH--H-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 999999988887433 5566666666662110 0 01111 1100000000011111222222222111
Q ss_pred ---------CChHHHHHHHH-----HHHHCC-------CCC----------------------ChhhHHHHHHHHHHcCC
Q 038801 382 ---------GLSDKAHSILD-----EMNACG-------CSV----------------------GLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 382 ---------~~~~~a~~~~~-----~m~~~~-------~~~----------------------~~~~~~~li~~~~~~g~ 418 (662)
..+..+.-.+. .+...| ..| -..-+..+.++..+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 00111111100 000000 011 01134556777777888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHH-------HHHHHHhcCCHHH
Q 038801 419 TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT-------IMTGLMENHRPEL 491 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------ll~~~~~~~~~~~ 491 (662)
++.|.+-+....... -+..-++....+|...|.+.+....-...++.|- -...-|+. +..++.+.++++.
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 888888888877663 3555566667778888888777776666665542 11122232 3335566677888
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ-TYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
++.+|.+.... ...|+ ...+....+++....+...- +.|+.. -...-...+.+.|++..|+..|.++
T Consensus 317 ai~~~~kaLte-~Rt~~---------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 317 AIKYYQKALTE-HRTPD---------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HHHHHHHHhhh-hcCHH---------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 88888886654 22222 12334455566655555443 244432 2222366777889999999999999
Q ss_pred HHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhH
Q 038801 571 KRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKME 649 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~ 649 (662)
+ .+. +-|...|.-...+|.+.|.+.+|++=.+.+.+.++. +..|..........+++..+...++..++++
T Consensus 385 I-------kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 385 I-------KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred H-------hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8 444 335688888888999999999999999998887654 3455555666677789999999999999999
Q ss_pred HHHH
Q 038801 650 ALIA 653 (662)
Q Consensus 650 p~~~ 653 (662)
|..+
T Consensus 457 p~~~ 460 (539)
T KOG0548|consen 457 PSNA 460 (539)
T ss_pred chhH
Confidence 8765
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.96 E-value=3.1e-07 Score=88.71 Aligned_cols=231 Identities=11% Similarity=-0.018 Sum_probs=146.1
Q ss_pred CChHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 038801 382 GLSDKAHSILDEMNACG-CSV--GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF 458 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 458 (662)
+..+.++.-+.+++... ..| ....|..+...|...|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666532 122 134577777778888888888888888877632 25677888888888888888888
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 459 SLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 459 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
..|++..+.. |.+..++..+...+...|++++|.+.|++..+..+-.|. .......+...++.++|.+.|++....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY---RALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888888764 445567777777888888888888888887764322221 111122234567889999999765543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 539 QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 539 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
..|+...+ .+. ....|+..++ +.++.+.+.++.. ..+.| ....|..+...+.+.|++++|...|++..+.++
T Consensus 195 -~~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~--~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 -LDKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDN--TELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -CCccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 23332222 222 2334555444 3445554211110 01122 235788888899999999999999999887663
Q ss_pred CCCHHhHH
Q 038801 618 FVDKWKYK 625 (662)
Q Consensus 618 ~p~~~~~~ 625 (662)
|+...+.
T Consensus 268 -~~~~e~~ 274 (296)
T PRK11189 268 -YNFVEHR 274 (296)
T ss_pred -chHHHHH
Confidence 2444443
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=1.8e-07 Score=90.37 Aligned_cols=219 Identities=12% Similarity=-0.057 Sum_probs=158.3
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHH
Q 038801 416 EHRTAEATQLVMDISSSG-LQLD--VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM 492 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 492 (662)
.+..+.+..-+.++.... ..|+ ...|..+...|...|+.++|...|++..+.. |.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356677778887777542 1222 3567888888999999999999999999876 66778999999999999999999
Q ss_pred HHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 493 AAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...|++..+. .|+ ..+|..+..++...|++++|.+.|++..+. .|+..........+...+++++|+..+++..
T Consensus 118 ~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999874 333 567888888999999999999999999975 5654322222223345688999999997765
Q ss_pred HhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh---CCCC-----CCHHhHHHHHHHHhhhhhhhHHHHH
Q 038801 572 RKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE---MKVF-----VDKWKYKQAFMENHKKLKVAKLRKR 643 (662)
Q Consensus 572 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~~~~-----p~~~~~~~~~~~~~~~~~~a~~~~~ 643 (662)
. ...|+...+ . ......|+..++ +.++.+.+ ..+. ++.|.++.......|+.+.|...++
T Consensus 193 -------~-~~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 193 -------E-KLDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred -------h-hCCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1 223332221 2 223345665544 34444432 1111 3467777888888999999999999
Q ss_pred HHHhhHHHH
Q 038801 644 NFKKMEALI 652 (662)
Q Consensus 644 ~~~~l~p~~ 652 (662)
++++++|.+
T Consensus 261 ~Al~~~~~~ 269 (296)
T PRK11189 261 LALANNVYN 269 (296)
T ss_pred HHHHhCCch
Confidence 999999864
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=4.6e-06 Score=83.93 Aligned_cols=150 Identities=12% Similarity=0.022 Sum_probs=82.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCChh
Q 038801 235 QSVSDAEKVIETMSVLGVRPNES-SFGFLAYLYAL----KGLQEKIVELESLMNEFGFSSQ-MVFYSSLISGYVKLGNLE 308 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 308 (662)
|++++|.+++++..+. .|+.. .+.. ...+.. .+..+.+.+.+.. ..+..|+ ......+...+...|+++
T Consensus 57 g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 57 GDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred CCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 7777777777776654 23322 2221 112222 3334444444433 1112232 333344555667777777
Q ss_pred hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc--chHHHHHHHHHhcCChHH
Q 038801 309 SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR--SVGFGIISACVNLGLSDK 386 (662)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~ 386 (662)
+|.+.+.+.++..+. +...+..+...+...|++++|...+++.....+. .++. ..|..+...+...|++++
T Consensus 132 ~A~~~~~~al~~~p~-----~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 132 RAEEAARRALELNPD-----DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHH
Confidence 777777777665422 4556666677777777777777777766542221 1221 223456666677777777
Q ss_pred HHHHHHHHHH
Q 038801 387 AHSILDEMNA 396 (662)
Q Consensus 387 a~~~~~~m~~ 396 (662)
|..++++...
T Consensus 205 A~~~~~~~~~ 214 (355)
T cd05804 205 ALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHhc
Confidence 7777777643
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=1.8e-05 Score=79.90 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=76.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 038801 415 KEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAA 494 (662)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 494 (662)
..+.+.+|+.+++.+.+. +.-..-|..+.+.|...|+++.|.++|-+. ..++--|..|.+.|+++.|.+
T Consensus 744 ~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHH
Confidence 344455555555555543 222333445555555556666665555432 134444555555666555555
Q ss_pred HHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 495 FLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 495 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
+-.+.. |....+..|-+-..-+-..|++.+|.++|-... .|+.. |..|-+.|..++.+++.++-.
T Consensus 813 la~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~a-----iqmydk~~~~ddmirlv~k~h--- 877 (1636)
T KOG3616|consen 813 LAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDKA-----IQMYDKHGLDDDMIRLVEKHH--- 877 (1636)
T ss_pred HHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchHH-----HHHHHhhCcchHHHHHHHHhC---
Confidence 544432 222233344444444445555555555543332 34332 344455555555555444322
Q ss_pred cccCCCCCccc--HHHHHHHHHHHHccCchHHHHHHHH
Q 038801 575 STDGQKGIKFE--HNLVDAFLYALVKGGFFDAVMQVVE 610 (662)
Q Consensus 575 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 610 (662)
|+ ..|...+..-+...|++++|.+-|-
T Consensus 878 ---------~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 878 ---------GDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred ---------hhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 22 2344455555555666666555443
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=8.4e-06 Score=82.01 Aligned_cols=307 Identities=12% Similarity=-0.075 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF-GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
.|..+...+...|+.+.+.+.+....+..+... +..-.. .....+...|++++|.+++++..+.. +.+...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARA--TERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 344444444455555555444444433222211 111111 11223445667777777777666542 333333332 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 411 KAYCK----EHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 411 ~~~~~----~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
..+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 12222 3344444444433 1111222 2233344556677777888888777777765 4445566677777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCccch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCC
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKT--HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF-EPNDQTY-L--SLINGYVTAEQ 559 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~~~ 559 (662)
.|++++|..++++.....+..++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 788888888777766542222332 2355677778888888888888888764321 1112111 1 22222233343
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-------C-CHHhHH--HHHH
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-------V-DKWKYK--QAFM 629 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-------p-~~~~~~--~~~~ 629 (662)
...+.. |+.+....... ..+ ............++...|+.++|...++.+....-. . .+...+ ....
T Consensus 241 ~~~~~~-w~~~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 241 VDVGDR-WEDLADYAAWH-FPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred CChHHH-HHHHHHHHHhh-cCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 222222 23222111000 011 111122235666778888999999888887542211 1 111111 2233
Q ss_pred HHhhhhhhhHHHHHHHHhh
Q 038801 630 ENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 630 ~~~~~~~~a~~~~~~~~~l 648 (662)
...|+.+.|......++.+
T Consensus 318 ~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 4557888887777776654
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.88 E-value=4e-05 Score=80.44 Aligned_cols=137 Identities=9% Similarity=0.043 Sum_probs=73.0
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHH----HHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI----IHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
.+.+...|.......-..+.+..|.+...+.+.-...+-+...|+.. ...++..|.++.|..-+..... ..|.
T Consensus 963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdE 1039 (1238)
T KOG1127|consen 963 HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDE 1039 (1238)
T ss_pred CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHH
Confidence 34455556665555555666666655555543211122233445532 2334445666655444332221 1122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
..-.+-+..|. .|+++++++.|+++..... -.-+ ++....++.+...+|.-+.|...+-+....
T Consensus 1040 di~gt~l~lFf-kndf~~sl~~fe~aLsis~------se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1040 DIRGTDLTLFF-KNDFFSSLEFFEQALSISN------SESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred HHhhhhHHHHH-HhHHHHHHHHHHHHhhhcc------cccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 22222222233 4889999999999883221 1222 255666777777888888888887776554
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=4.3e-05 Score=80.12 Aligned_cols=312 Identities=10% Similarity=0.122 Sum_probs=187.4
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccH-----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 225 AALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSF-----GFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 225 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-----~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
..+.++... +-+.+-+++++++.- .|+.++= |.||-. +-.-+..++.++.+.+...+ .|+ +..
T Consensus 989 ~tVkAfMta-dLp~eLIELLEKIvL---~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyD-a~~------ia~ 1056 (1666)
T KOG0985|consen 989 VTVKAFMTA-DLPNELIELLEKIVL---DNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYD-APD------IAE 1056 (1666)
T ss_pred HHHHHHHhc-CCcHHHHHHHHHHhc---CCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCC-chh------HHH
Confidence 444555554 666666666666542 2332221 122211 22233444555555544432 122 222
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHH
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACV 379 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~ 379 (662)
.....+-+++|+.+|.. ... +....+.||. .-+..+.|.++-++.. ...+|+.+..+-.
T Consensus 1057 iai~~~LyEEAF~ifkk-f~~--------n~~A~~VLie---~i~~ldRA~efAe~~n---------~p~vWsqlakAQL 1115 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKK-FDM--------NVSAIQVLIE---NIGSLDRAYEFAERCN---------EPAVWSQLAKAQL 1115 (1666)
T ss_pred HHhhhhHHHHHHHHHHH-hcc--------cHHHHHHHHH---HhhhHHHHHHHHHhhC---------ChHHHHHHHHHHH
Confidence 33444556666666422 221 3444444443 2345556655555432 2345666777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 038801 380 NLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFS 459 (662)
Q Consensus 380 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (662)
+.|.+.+|++-|-+ ..|...|.-++....+.|.+++-.+++...+++.-.|.+. +.||-+|++.++..+.++
T Consensus 1116 ~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred hcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHH
Confidence 77777777665532 2355677777777777777777777777666665444444 357777777777766555
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038801 460 LFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539 (662)
Q Consensus 460 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (662)
.+ .-|+......+.+-|...+.++.|.-++..+. -|..|...+...|++..|...-++.
T Consensus 1188 fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AVD~aRKA---- 1246 (1666)
T KOG0985|consen 1188 FI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAVDAARKA---- 1246 (1666)
T ss_pred Hh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence 44 24555666677777777777777766665442 3777778888888888887765543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 540 FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 540 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
-+..||.-+-.+|...+.+.-| +|. ...+-....-..-++.-|-..|-++|-+.+++..
T Consensus 1247 --ns~ktWK~VcfaCvd~~EFrlA-----QiC-------GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1247 --NSTKTWKEVCFACVDKEEFRLA-----QIC-------GLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred --cchhHHHHHHHHHhchhhhhHH-----Hhc-------CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 2567888888888877766544 445 4444555566778888899999999999988876
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=2.3e-05 Score=80.32 Aligned_cols=251 Identities=13% Similarity=0.082 Sum_probs=155.2
Q ss_pred ChHHHHHHHH--HHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCC--C
Q 038801 141 DFQTVHTLLG--SMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDF--M 216 (662)
Q Consensus 141 ~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~ 216 (662)
|..|=..+++ .|...|+.+.|.+-.+-+... .+..-+..+|.+.+++|-|.-++-.|......+..+. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~-------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD-------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh-------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 3444444544 367788889888888777543 2355688888888888888888777755432211110 1
Q ss_pred CccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHH
Q 038801 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296 (662)
Q Consensus 217 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (662)
.++. -.+-..+++..+|.+++|+.+|.+-+. |..|=+.|-..|.+++|.++-+.=.+..+ ..||-.
T Consensus 798 ~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~ 863 (1416)
T KOG3617|consen 798 NGEE--DEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYN 863 (1416)
T ss_pred CCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHH
Confidence 2221 112222333335999999999998875 33444667788999998888654333222 223333
Q ss_pred HHHHHHhcCChhhHHHHHHH----------HHcCCCC-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 038801 297 LISGYVKLGNLESASRTILL----------CLGGGNM-----EQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEP 361 (662)
Q Consensus 297 li~~~~~~g~~~~A~~~~~~----------~~~~~~~-----~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 361 (662)
...-+-..++++.|++.|++ |+.+.+. .....|...|.-...-+-..|+.+.|+.+|...+.
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 44444556667766665433 3332110 00011333444444445568899999999887653
Q ss_pred CCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038801 362 SGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDIS 430 (662)
Q Consensus 362 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 430 (662)
|.+++...|-.|+.++|.++-++- .|....-.+.+.|-..|++.+|..+|.+..
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667788888888888888876643 355566678888888888888888887654
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=4.3e-05 Score=77.29 Aligned_cols=192 Identities=18% Similarity=0.147 Sum_probs=107.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 038801 339 GFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 418 (662)
.+.+.|+++.|..-|-+... ....+.+......+.+|+.+++.+.+.. .-...|..+...|...|+
T Consensus 715 hl~~~~q~daainhfiea~~------------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~d 780 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC------------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGD 780 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh------------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchh
Confidence 34455666666655544321 1224555556667777777777666653 223456666677777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 419 TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDE 498 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 498 (662)
++.|+++|.+. ..++--|..|.+.|+|+.|.++-.+. .|...+...|..-..-+-+.|++.+|++++-.
T Consensus 781 fe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 781 FEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 77777777543 22445566677777777776665432 23333444455555556666777666666544
Q ss_pred HhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 499 VVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 499 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
+.+ | ..-|.+|-+.|..+..+++.++-. |+. .|...+..-+-..|+...|..-|-+.
T Consensus 850 i~~-----p-----~~aiqmydk~~~~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 850 IGE-----P-----DKAIQMYDKHGLDDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred ccC-----c-----hHHHHHHHhhCcchHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 322 2 234566667777666666655432 332 35555555555566666665544433
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=3.8e-06 Score=73.11 Aligned_cols=193 Identities=10% Similarity=-0.048 Sum_probs=145.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITS 451 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 451 (662)
-+.-+|...|+...|.+-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+. .| +....|....-+|..
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhC
Confidence 35667778888888888888888775 556677888888888888888888888888776 34 556777777888888
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 038801 452 QDFQSAFSLFRDMREAR-IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (662)
|++++|...|++....- ...-..||..+.-+..+.|+.+.|.++|++..+..+-. ..+.-.+.....+.|++..|..
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~--~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC--ChHHHHHHHHHHhcccchHHHH
Confidence 88888888888877653 22333577777777888888888888888877642322 2356677788888889999988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 531 TLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 531 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.++.....+. ++..+....|..-...|+-+.+-++=.++.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888887654 777777777777777888888877766666
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.85 E-value=1.7e-05 Score=90.57 Aligned_cols=276 Identities=9% Similarity=-0.035 Sum_probs=129.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCChhhHHHHHH
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSDKAHSILDEMNAC----GC-SVGLGVYVPTLK 411 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~ 411 (662)
..+...|++++|...+++.....+.+... -....+.+...+...|++++|...+++.... |. .....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 33444445555544444443322222111 1122233334444455555555554444321 10 001123333444
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCC--CcccHHHHH
Q 038801 412 AYCKEHRTAEATQLVMDISSS----GLQ--L-DVGNYDALIEASITSQDFQSAFSLFRDMREAR--IYD--LKGSYLTIM 480 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~ll 480 (662)
.+...|+++.|...+++.... |.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 455555555555555443221 111 1 12223333444444566666655555543321 011 112222333
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC---CCCccch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHH
Q 038801 481 TGLMENHRPELMAAFLDEVVED---PRVEVKT--HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND---QTYLSLIN 552 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~ 552 (662)
..+...|+.+.|.+.+.+.... .+..... ..-...+..+...|+.+.|.+++............ ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 4455556666666555554321 1100000 00011223445577888888887665532111111 12345666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
++...|++++|...+++.....+ ..|..++. .+...+..++.+.|+.++|...+.+..+..
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~---~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENAR---SLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHH---HhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 67778888888888888875433 22333332 456666777888899888888888886554
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.82 E-value=1.3e-07 Score=89.87 Aligned_cols=129 Identities=14% Similarity=0.199 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
.....+..|.+.++++.|.+.++.|.+. ..|. +...|..++.. .+.+.+|..+|+++. + ...++.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~-------~-~~~~t~ 201 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELS-------D-KFGSTP 201 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHH-------C-CS--SH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHH-------h-ccCCCH
Confidence 3344455555555555555555555542 2222 22223332222 123555555555554 2 223444
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhh-hhhHHHHHHHHhhHH
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKL-KVAKLRKRNFKKMEA 650 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~-~~a~~~~~~~~~l~p 650 (662)
.+.+.+..+....|++++|.+++++..+.++. |+....+...+...|+. +.+.+...++....|
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 55555555555555555555555555443333 33333322222333433 334444444444433
No 96
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.82 E-value=0.00018 Score=70.65 Aligned_cols=426 Identities=10% Similarity=0.055 Sum_probs=239.1
Q ss_pred CCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCC
Q 038801 138 KLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMK 217 (662)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 217 (662)
.+-|..+|..|++-+... .++++...++++.. .+|....+...-+..-.+..+++..+++|.++.. ..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv---------kv 83 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLV---------KV 83 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH---------HH
Confidence 456788999999887766 89999999999976 4677766667667777788999999999999875 34
Q ss_pred ccHHHHHHHHHHHhccCCChhHH----HHHHHH-HHhcCCCCCccc-HHHHHH---------HHHHcCCHHHHHHHHHHH
Q 038801 218 PNIYACNAALEGCCYGLQSVSDA----EKVIET-MSVLGVRPNESS-FGFLAY---------LYALKGLQEKIVELESLM 282 (662)
Q Consensus 218 ~~~~~~~~ll~~~~~~~~~~~~a----~~~~~~-m~~~g~~p~~~t-~~~li~---------~~~~~g~~~~a~~~~~~~ 282 (662)
-++..|...|.-..+..|+...+ .+.|+- |.+.|+.+-... |+..+. -+....+++...+++..+
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 56777888777554443444442 222333 233454443332 332222 222334556667777776
Q ss_pred HhcCCCCcHHhHHHHH------HHH-------HhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc------
Q 038801 283 NEFGFSSQMVFYSSLI------SGY-------VKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN------ 343 (662)
Q Consensus 283 ~~~g~~~~~~~~~~li------~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~------ 343 (662)
....+.-=...|+-.. +-. -+...+-.|.+++.+.. .+++++.+.
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~----------------~lt~GL~r~~~~vp~ 227 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQ----------------NLTRGLNRNAPAVPP 227 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH----------------HHHhhhcccCCCCCC
Confidence 6543211111221110 000 00111222222222211 111111110
Q ss_pred -CCHHH--HHHHHHHHHHhCC-CCcc-cccchHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCChhhHHH-----HHHH
Q 038801 344 -GNVKG--LANLIIEAQKLEP-SGIV-VDRSVGFGIISACVNLGLSDKAHSILDE-MNACGCSVGLGVYVP-----TLKA 412 (662)
Q Consensus 344 -~~~~~--a~~~~~~m~~~~~-~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~-----li~~ 412 (662)
|-.++ ..+++....+.+. .++. .+...... ...-++++ |.-.++.|++....+ .-+.
T Consensus 228 ~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~------------Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l 295 (656)
T KOG1914|consen 228 KGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTR------------RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDL 295 (656)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCcccccccHHHH------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHH
Confidence 11111 1111111111000 1111 11100000 00001111 111122222211000 0112
Q ss_pred HHHcCC-------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---cCCCHHHHHHHHHHHHHcC-CCCCcccHHHHHH
Q 038801 413 YCKEHR-------TAEATQLVMDISSSGLQLDVGNYDALIEASI---TSQDFQSAFSLFRDMREAR-IYDLKGSYLTIMT 481 (662)
Q Consensus 413 ~~~~g~-------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~ 481 (662)
+...|+ .+++..+++.....-..-+..+|..+.+.-- .....+.....+++....- +.|+ -+|-.++.
T Consensus 296 ~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn 374 (656)
T KOG1914|consen 296 LTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMN 374 (656)
T ss_pred HHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHH
Confidence 222233 4555666665544322223444443332211 1123566667777776544 3444 58888999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCH
Q 038801 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTY-LSLINGYVTAEQY 560 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~~~~ 560 (662)
...+..-+..|..+|.+..++....-++.+++++|.-|| .++.+-|.++|+--.+. .+|...| ...++-+...|+-
T Consensus 375 ~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd 451 (656)
T KOG1914|consen 375 FIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDD 451 (656)
T ss_pred HHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcc
Confidence 999999999999999999998444458889999999887 57889999999987764 4555433 5667777888999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcccH--HHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 561 FSVLMMWHEIKRKISTDGQKGIKFEH--NLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 561 ~~a~~~~~~m~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
..|..+|++.. ..++.|+. .+|..++.--..-|++..+.++-+++..
T Consensus 452 ~N~R~LFEr~l-------~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 452 NNARALFERVL-------TSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhHHHHHHHHH-------hccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999 66677765 8999999999999999999999888753
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=5.4e-07 Score=85.68 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=152.6
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
++.+.-.|++..++.-.+ ........+......+.+++...|+.. .++.. +... ..|.......+...+..
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~---~vl~e----i~~~-~~~~l~av~~la~y~~~ 78 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYD---SVLSE----IKKS-SSPELQAVRLLAEYLSS 78 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HH---HHHHH----S-TT-SSCCCHHHHHHHHHHCT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChh---HHHHH----hccC-CChhHHHHHHHHHHHhC
Confidence 445555788888886665 332222223344556667777777632 22222 2232 35666666555555554
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccC
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGL 234 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 234 (662)
.++-+.++.-+++.........+..+..+...++...|++++|++++... .+.......+..+.+.
T Consensus 79 ~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~- 144 (290)
T PF04733_consen 79 PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKM- 144 (290)
T ss_dssp STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHT-
T ss_pred ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHc-
Confidence 44555565555554443333334444555556677788888888877642 3455666777788886
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL----KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESA 310 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 310 (662)
++++.|.+.++.|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|
T Consensus 145 ~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 145 NRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp T-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHH
T ss_pred CCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHH
Confidence 89999999998887642 33444445544432 23578888888887665 457788888888888888999999
Q ss_pred HHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 038801 311 SRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNV-KGLANLIIEAQK 358 (662)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 358 (662)
.+++.+.+...+. +..+...+|.+....|+. +.+.+++.+++.
T Consensus 221 e~~L~~al~~~~~-----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 221 EELLEEALEKDPN-----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCCC-CC-----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHhccC-----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 8888888766432 566666777777777776 556677777665
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.0004 Score=73.22 Aligned_cols=383 Identities=15% Similarity=0.099 Sum_probs=227.4
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHhhhC--CCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHH
Q 038801 69 TSLETNLHKSLLTNNTDEAWKSFKSLTAN--SLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVH 146 (662)
Q Consensus 69 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (662)
...+..+.++...+-+.+.+++++++.-. .+.-+...-|.++-.-.+..+ .++.+.+.+ .|...-.
T Consensus 985 e~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~----trVm~YI~r--------LdnyDa~ 1052 (1666)
T KOG0985|consen 985 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADR----TRVMEYINR--------LDNYDAP 1052 (1666)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcCh----HHHHHHHHH--------hccCCch
Confidence 33445566666677777777777776522 233334444554444444432 122222111 0111111
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
.+...+..++-+++|+.+|+...-.+ .....|+ -..++.+.|.+.-+++ - ....|..+
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~------~A~~VLi---e~i~~ldRA~efAe~~-----------n--~p~vWsql 1110 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNV------SAIQVLI---ENIGSLDRAYEFAERC-----------N--EPAVWSQL 1110 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccH------HHHHHHH---HHhhhHHHHHHHHHhh-----------C--ChHHHHHH
Confidence 24455566667777777776653211 1122222 2346666676665554 1 23468888
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGN 306 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 306 (662)
-.+-.+. |.+.+|++-|-+. -|...|.-++..+.+.|.+++-.+++...++..-+|.+ -+.||-+|++.++
T Consensus 1111 akAQL~~-~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1111 AKAQLQG-GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHhc-CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhch
Confidence 8888886 8888888776543 25667888889999999999888888888777666654 4578888998888
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHH
Q 038801 307 LESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDK 386 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 386 (662)
..+-++.+ . -||......+.+-|...|.++.|.-+|... .-|..+...+...|++..
T Consensus 1182 l~elE~fi----~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v------------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1182 LTELEEFI----A-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV------------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHHHHh----c-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh------------hhHHHHHHHHHHHHHHHH
Confidence 88776643 2 247777777778888888888887777543 236667777777788777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
|..--++. .+..||..+-.+|...+.+.-| +|-..++.....-..-++..|-..|.+++...+++....
T Consensus 1239 AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1239 AVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 76554332 3556777777777666554432 233222333445567788888888998888888876543
Q ss_pred cCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------ccchhhHHHHHHHHHhcCCHHHHHH
Q 038801 467 ARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRV------EVKTHDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 467 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~p~~~~~~~li~~~~~~g~~~~A~~ 530 (662)
.. +.....|+.|.-.|.+- ++++..+.++-.-.+-++ .-....|+-++-.|.+-..++.|.-
T Consensus 1308 LE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1308 LE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred hh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 21 12223455555445443 333333333222211111 1123568888888887777776643
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=7.6e-07 Score=87.61 Aligned_cols=250 Identities=7% Similarity=0.035 Sum_probs=193.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQ 455 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~ 455 (662)
-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+. .| +....-.|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 3457788999999999988875 567889999999999999999999999999887 44 5677888888999999999
Q ss_pred HHHHHHHHHHHcCC------C--CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHH
Q 038801 456 SAFSLFRDMREARI------Y--DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 456 ~A~~~~~~m~~~~~------~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (662)
+|+..++.-+.... . ++...-.. ..+..........++|-++....+.++|..++..|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999998766531 0 00000000 22333334566677777777766766778889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHH
Q 038801 528 AKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAV 605 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 605 (662)
|...|+..+. ++|+. ..||-|...++...+.++|+.-|++.. .++|+- ....-|.-+|+..|.+++|
T Consensus 449 aiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---------qLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 449 AVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---------QLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---------hcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 9999999997 47865 799999999999999999999999999 677875 4445577889999999999
Q ss_pred HHHHHHHHhCCCC-------C----CHHhHHHHHHHHhhhhhhhHHHH
Q 038801 606 MQVVEKSQEMKVF-------V----DKWKYKQAFMENHKKLKVAKLRK 642 (662)
Q Consensus 606 ~~~~~~m~~~~~~-------p----~~~~~~~~~~~~~~~~~~a~~~~ 642 (662)
.+.|=....+... | .+|.++..++...++.+....+.
T Consensus 518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9998665432111 1 48999987777777777555443
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=9.6e-06 Score=73.10 Aligned_cols=353 Identities=11% Similarity=-0.002 Sum_probs=203.6
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHH
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYAC 223 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (662)
-+++++..+.+..++..|++++....+.. |.+..-.+.|...|-+..++..|-.+++++.. ..|...-|
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---------l~P~~~qY 80 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---------LHPELEQY 80 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------hChHHHHH
Confidence 35567777788888999999888877653 44555567777777788999999999999876 45666555
Q ss_pred HHH-HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHH--HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH
Q 038801 224 NAA-LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAY--LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISG 300 (662)
Q Consensus 224 ~~l-l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 300 (662)
... -..+.+. +.+..|+++...|.+. |+...-..-+. ...+.+++..+..+.++....| +..+.+.....
T Consensus 81 rlY~AQSLY~A-~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCl 153 (459)
T KOG4340|consen 81 RLYQAQSLYKA-CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHh-cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhe
Confidence 432 2345555 8889999999888642 22221111122 2235677777877777765432 33344444455
Q ss_pred HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH-----HH
Q 038801 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG-----II 375 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~-----ll 375 (662)
..+.|+.++|.+-|...++-. |.. ....||..+ +..+.|+.+.|++...++.+ +|++-... ++. .+
T Consensus 154 lykegqyEaAvqkFqaAlqvs---Gyq-pllAYniAL-aHy~~~qyasALk~iSEIie---RG~r~HPE-lgIGm~tegi 224 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVS---GYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIE---RGIRQHPE-LGIGMTTEGI 224 (459)
T ss_pred eeccccHHHHHHHHHHHHhhc---CCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHH---hhhhcCCc-cCccceeccC
Confidence 567888888888887777763 333 234565544 34466778888888777655 44331110 000 00
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCH
Q 038801 376 SACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG-LQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~ 454 (662)
++ ...|+. .. |..++ =+..+|.-...+.+.|+++.|.+.+..|.-+. -..|.+|...+.-.- ..+++
T Consensus 225 Dv-rsvgNt---~~----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p 292 (459)
T KOG4340|consen 225 DV-RSVGNT---LV----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARP 292 (459)
T ss_pred ch-hcccch---HH----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCc
Confidence 00 000110 00 00000 01233444445677889999999888885332 234666665543322 23445
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRR 534 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (662)
.+..+-+.-+.+.+. -...||..++-.||++.-++.|..++.+-....-.-.+...|+.|=..-...-..++|.+-++.
T Consensus 293 ~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 293 TEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred cccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555555555543 3346999999999999998888888766322100112333444332222234456666665554
Q ss_pred HH
Q 038801 535 MI 536 (662)
Q Consensus 535 m~ 536 (662)
+.
T Consensus 372 La 373 (459)
T KOG4340|consen 372 LA 373 (459)
T ss_pred HH
Confidence 44
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.71 E-value=0.00019 Score=66.32 Aligned_cols=296 Identities=14% Similarity=0.112 Sum_probs=191.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHH
Q 038801 296 SLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV---VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF 372 (662)
Q Consensus 296 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 372 (662)
-|...+...|++.+|+.-|...++. |+..|.++ ...|...|+...|+.-+.+..+ ++||-..-.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-----lKpDF~~AR 109 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-----LKPDFMAAR 109 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-----cCccHHHHH
Confidence 3445555666666666666666554 44444433 3456666666666666666543 344421111
Q ss_pred H-HHHHHHhcCChHHHHHHHHHHHHCCCCC--Chh------------hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 038801 373 G-IISACVNLGLSDKAHSILDEMNACGCSV--GLG------------VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD 437 (662)
Q Consensus 373 ~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 437 (662)
. -...+.+.|.++.|..-|+..++..-.- +.. .....+..+...|+...|++....+.+.. ..|
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wd 188 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWD 188 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cch
Confidence 1 2234556677777777777776653100 011 12223445666788888888888888763 348
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh----hHH
Q 038801 438 VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH----DWN 513 (662)
Q Consensus 438 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~ 513 (662)
...|..-..+|...|++..|+.=++...+.. ..+..++..+-..+...|+.+.++....+..+ +.||.. .|.
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YK 264 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYK 264 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHH
Confidence 8888888889999999988887777666554 44455667777788888888887777776654 334422 122
Q ss_pred HH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--H---HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCC
Q 038801 514 SI---------IHAFCKAGRLEDAKRTLRRMIFLQFEPND--Q---TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQ 579 (662)
Q Consensus 514 ~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 579 (662)
.+ +......++|.++++-.+...+. .|.. . .+..+-.++...+++.+|++...++.
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-------- 334 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-------- 334 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH--------
Confidence 11 12234567788888888877765 4442 2 34455566667899999999999988
Q ss_pred CCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC
Q 038801 580 KGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 580 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 620 (662)
.+.|| ..++.--..+|.-...+++|+.-+++..+.+...+
T Consensus 335 -~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 335 -DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred -hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 66676 67888888888888999999999999887765533
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2.2e-08 Score=59.97 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=16.9
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 433 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=3.3e-08 Score=59.24 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 539 QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 539 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=8.9e-05 Score=84.80 Aligned_cols=314 Identities=10% Similarity=-0.043 Sum_probs=167.5
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCC----C---cccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFM----P---FELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
.....+...|++++|..++......-... + .......+...+...|++++|...+++..+.. ...+
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------~~~~ 486 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-------PLTW 486 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------CCcc
Confidence 34445567788888888887765421110 0 11122233344556788888888888875521 1111
Q ss_pred ----HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC---CCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHhc----C
Q 038801 220 ----IYACNAALEGCCYGLQSVSDAEKVIETMSVLGV---RPN--ESSFGFLAYLYALKGLQEKIVELESLMNEF----G 286 (662)
Q Consensus 220 ----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~~----g 286 (662)
....+.+-..+... |++++|...+++.....- .+. ..++..+...+...|++++|...+++.... +
T Consensus 487 ~~~~~~a~~~lg~~~~~~-G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 487 YYSRIVATSVLGEVHHCK-GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 12334444445555 888888888887754211 111 123444555677788888888887776542 2
Q ss_pred CC--C-cHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 038801 287 FS--S-QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSG 363 (662)
Q Consensus 287 ~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 363 (662)
.. + ....+..+...+...|++++|...+.+.+......+.......+..+...+...|+.++|.+.+++...+....
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 11 1 22334455566677788888888776665532211111123344455666777888888888887765432221
Q ss_pred ccc-ccch-H-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----C
Q 038801 364 IVV-DRSV-G-FGIISACVNLGLSDKAHSILDEMNACGCSVG---LGVYVPTLKAYCKEHRTAEATQLVMDISSS----G 433 (662)
Q Consensus 364 ~~~-~~~~-~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g 433 (662)
... .... . ...+..+...|+.+.|.+.+........... ...+..+..++...|+.++|...+++.... |
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 646 RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 100 0000 0 0112333446677777777655443211111 011234555666667777777776665442 2
Q ss_pred CCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 434 LQLD-VGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 434 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
...+ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 726 ~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 726 LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1111 2344445556666677777777766666543
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=0.00021 Score=70.33 Aligned_cols=106 Identities=10% Similarity=-0.019 Sum_probs=81.1
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
..+.+..|+++.|+..|-......+. +...|+.-..++++.|+ ..+++....+-.+..|.= ...|.....++..
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~---~~~al~da~k~~~l~p~w--~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGS---YEKALKDATKTRRLNPDW--AKGYSRKGAALFG 82 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhh---HHHHHHHHHHHHhcCCch--hhHHHHhHHHHHh
Confidence 34567789999999999999876655 88889999999999998 445555544333333332 3579999999999
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDIC 188 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (662)
.|++++|+.-|.+=++. .|++....+-|..++
T Consensus 83 lg~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred cccHHHHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 99999999999988774 467777666666665
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.1e-05 Score=72.72 Aligned_cols=121 Identities=14% Similarity=0.080 Sum_probs=68.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 038801 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQ 559 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~ 559 (662)
..+.+.++.+.|.+-+..|.-+.....|+.|...+.-.-. .+++.+..+-+.-+... .|- ..||..++-.||+..-
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHH
Confidence 3456677777777777776555445556666555443222 34444455555545543 342 3578888888888877
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCc-ccHHHHHHHHHHHH-ccCchHHHHHHHHHH
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIK-FEHNLVDAFLYALV-KGGFFDAVMQVVEKS 612 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m 612 (662)
++-|-.++-+-. ..... .+...|+ |+.++. -.-..++|.+-++.+
T Consensus 326 f~lAADvLAEn~-------~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 326 FDLAADVLAENA-------HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HhHHHHHHhhCc-------chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 777777765444 22322 2334444 344444 344566666666554
No 107
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=0.00033 Score=73.85 Aligned_cols=461 Identities=13% Similarity=0.027 Sum_probs=230.7
Q ss_pred hhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHH
Q 038801 84 TDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFA 163 (662)
Q Consensus 84 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 163 (662)
...|+..|-+..+.... -...|..|-..|....+ ..++...+...++.++. +..........|++..+++.|..
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~D---m~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDD---MKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHH
Confidence 44444444444332211 13345555555554443 33333333333444333 34455667888888888888888
Q ss_pred HHHHHHhcCC-CCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHH
Q 038801 164 LVKCMFKNRY-FMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEK 242 (662)
Q Consensus 164 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 242 (662)
+.-..-+... ......+.. ..-.|.+.++...|+.-|+...+. -+.|...|..+..+|.+. |++..|++
T Consensus 548 I~l~~~qka~a~~~k~nW~~-rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~s-Gry~~AlK 617 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQ-RGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPES-GRYSHALK 617 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhh-ccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhc-CceehHHH
Confidence 7333222110 000111111 333445678888888888888763 355777999999999998 99999999
Q ss_pred HHHHHHhcCCCCCcccHHHHH--HHHHHcCCHHHHHHHHHHHHhcC------CCCcHHhHHHHHHHHHhcCChhhHHHHH
Q 038801 243 VIETMSVLGVRPNESSFGFLA--YLYALKGLQEKIVELESLMNEFG------FSSQMVFYSSLISGYVKLGNLESASRTI 314 (662)
Q Consensus 243 ~~~~m~~~g~~p~~~t~~~li--~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~ 314 (662)
+|.+.... .|+. +|.... -.-+..|.+.++...+......- ...-..++-.+...+...|-...|...+
T Consensus 618 vF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ 694 (1238)
T KOG1127|consen 618 VFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFF 694 (1238)
T ss_pred hhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 99888753 4443 333322 34556788999988887765431 1111222222222222223233333332
Q ss_pred HHHH-------cCCCCCCCCCCHHHHHHHHHHHH---hcC-C-HH-HHHHHHHH-HHHhC-----------------CCC
Q 038801 315 LLCL-------GGGNMEQSDFSKETYCEVVKGFL---QNG-N-VK-GLANLIIE-AQKLE-----------------PSG 363 (662)
Q Consensus 315 ~~~~-------~~~~~~~~~p~~~~~~~li~~~~---~~~-~-~~-~a~~~~~~-m~~~~-----------------~~~ 363 (662)
++.+ .+... -+...|-.+-.+|. ... + +. -...+|.. ...+. .-.
T Consensus 695 eksie~f~~~l~h~~~----~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls 770 (1238)
T KOG1127|consen 695 EKSIESFIVSLIHSLQ----SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS 770 (1238)
T ss_pred HHHHHHHHHHHHHhhh----hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH
Confidence 2222 22100 02222222222111 111 0 00 00000000 10000 000
Q ss_pred cccccchHHHHHHHHHh----cC----ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 038801 364 IVVDRSVGFGIISACVN----LG----LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ 435 (662)
Q Consensus 364 ~~~~~~~~~~ll~~~~~----~~----~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (662)
...+..+|..+...|.+ .| +...|..-+.+.++.. ..+..+||.|.-. ...|++.-|..-|-+-.... +
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p 847 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-P 847 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-c
Confidence 11123334444333333 11 2234555555554432 3345556655433 55566666666555544432 2
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH---HhhCCCCccchhhH
Q 038801 436 LDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDE---VVEDPRVEVKTHDW 512 (662)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~p~~~~~ 512 (662)
....+|..+.-.+.+..+++.|...|...+... |.+...|..........|+.-++..+|.. +....|-.++..-|
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 256677777777788888888888888777664 44444555444445556766666666654 22222344444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh---------CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIF---------LQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
-+........|+.++-...-+.+-. .+ .|+ ...|.+.....-+.+.+.+|.+...+...
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555443333222221 12 344 35777776666667777777777776653
No 108
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.60 E-value=0.0015 Score=68.56 Aligned_cols=421 Identities=13% Similarity=0.088 Sum_probs=245.0
Q ss_pred cCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHH--hccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038801 190 KNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGC--CYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYA 267 (662)
Q Consensus 190 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 267 (662)
..+++..|..-.+++.+ ..||.. |..++.++ .+. |+.++|..+++.....+.. |..|...+-..|.
T Consensus 21 d~~qfkkal~~~~kllk---------k~Pn~~-~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLK---------KHPNAL-YAKVLKALSLFRL-GKGDEALKLLEALYGLKGT-DDLTLQFLQNVYR 88 (932)
T ss_pred hhHHHHHHHHHHHHHHH---------HCCCcH-HHHHHHHHHHHHh-cCchhHHHHHhhhccCCCC-chHHHHHHHHHHH
Confidence 46788899988888876 466654 33444443 454 9999999999998877644 8889999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC-CH
Q 038801 268 LKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG-NV 346 (662)
Q Consensus 268 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~ 346 (662)
..|..++|..+|+...... |+......+..+|.+.+++.+-.++=-++.+.-+. +...+=++++.+.+.. ..
T Consensus 89 d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~ 161 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-----RAYYFWSVISLILQSIFSE 161 (932)
T ss_pred HHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCC
Confidence 9999999999999998764 77888888889999998887644443333333211 4444445555544322 11
Q ss_pred ---------HHHHHHHHHHHHhCCCCcccccc-hHHHHHHHHHhcCChHHHHHHHH-HHHHCCCCCChhhHHHHHHHHHH
Q 038801 347 ---------KGLANLIIEAQKLEPSGIVVDRS-VGFGIISACVNLGLSDKAHSILD-EMNACGCSVGLGVYVPTLKAYCK 415 (662)
Q Consensus 347 ---------~~a~~~~~~m~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~ 415 (662)
.-|.+.++.+.+ ..| +.... -...-+..+...|++++|.+++. ...+.-...+...-+.-+..+..
T Consensus 162 ~~~~~~i~l~LA~~m~~~~l~--~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 162 NELLDPILLALAEKMVQKLLE--KKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cccccchhHHHHHHHHHHHhc--cCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 224445555543 122 22211 11122344556788999999983 44444334455555677888899
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----------------CCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 038801 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASIT----------------SQDFQSAFSLFRDMREARIYDLKGSYLTI 479 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----------------~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 479 (662)
.+++.+..++-.++..+|. |. |...++.+++ .+..+...+..++..... ....|..-
T Consensus 239 l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~ 311 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLAR 311 (932)
T ss_pred hcChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHH
Confidence 9999999999999988853 32 4443332221 122222222222222221 12233333
Q ss_pred HHHHH---hcCCHHHHHHH-HHHHhhCC--------------------------CCccchh-------hHHHHHHHHHhc
Q 038801 480 MTGLM---ENHRPELMAAF-LDEVVEDP--------------------------RVEVKTH-------DWNSIIHAFCKA 522 (662)
Q Consensus 480 l~~~~---~~~~~~~a~~~-~~~~~~~~--------------------------~~~p~~~-------~~~~li~~~~~~ 522 (662)
+.... .-|+.+++.-. |++.-... +..++.. -+.+.+..-.-.
T Consensus 312 lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~ 391 (932)
T KOG2053|consen 312 LELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLL 391 (932)
T ss_pred HHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHh
Confidence 33332 33555544322 22221110 0011110 012222222222
Q ss_pred C-----CHHHHHHHHHHHHh---CC------CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHHHHHHHhhcc
Q 038801 523 G-----RLEDAKRTLRRMIF---LQ------FEPNDQ---------TYLSLINGYVTAEQYF---SVLMMWHEIKRKIST 576 (662)
Q Consensus 523 g-----~~~~A~~~~~~m~~---~~------~~p~~~---------~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~ 576 (662)
| +.+.-..++++... +| +-|+.. +-+.|++.|-+.++.. +|+-+++...
T Consensus 392 G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~gl----- 466 (932)
T KOG2053|consen 392 GLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGL----- 466 (932)
T ss_pred hccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-----
Confidence 3 12233333332221 22 223322 4567888888887765 4666666555
Q ss_pred cCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHH-HHHHHHhhhhhhhHHHHHHHHhh
Q 038801 577 DGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYK-QAFMENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 577 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~~~~~~~~~~~~a~~~~~~~~~l 648 (662)
...| |..+--.+++.|.-.|-+..|.+.++.+.-.++..|+..++ ...+...|....+.......+.+
T Consensus 467 ----t~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkf 536 (932)
T KOG2053|consen 467 ----TKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKF 536 (932)
T ss_pred ----hcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 2334 34556778889998999999999999998888888877777 44555567766666555555443
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=2.1e-05 Score=85.23 Aligned_cols=232 Identities=11% Similarity=0.092 Sum_probs=179.4
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc
Q 038801 400 SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-----DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG 474 (662)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 474 (662)
+-+...|-..|......++.++|.+++++.... +.+ -...|.+++..-..-|.-+...++|++..+.. ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 445677888888888899999999999988753 211 13467777777777788888899999998864 2235
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H-HHHHHHH
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN--D-QTYLSLI 551 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~-~~~~~li 551 (662)
.|..|...|.+.++.++|.++++.|.++.+- ....|...+..+.+..+-+.|..++.+..+. -|. . ....-.+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q--~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQ--TRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcc--hhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 7888999999999999999999999998773 4467999999999999999999999998874 454 2 2233334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHH----H
Q 038801 552 NGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYK----Q 626 (662)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~ 626 (662)
..-.+.|+.+.+..+|+..... .| -...|+.+++.-.+.|+.+.+..+|++....++.|.....+ |
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~a---------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSA---------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhh---------CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 4445679999999999999832 23 23689999999999999999999999999999998744443 5
Q ss_pred HHHHHhhhhhhhHHHHHHHHh
Q 038801 627 AFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 627 ~~~~~~~~~~~a~~~~~~~~~ 647 (662)
.+=..+||-+..+..-.++.+
T Consensus 1679 eyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHhcCchhhHHHHHHHHHH
Confidence 566667887777776665554
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=1.6e-05 Score=78.65 Aligned_cols=224 Identities=9% Similarity=-0.020 Sum_probs=156.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC
Q 038801 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG 344 (662)
Q Consensus 265 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 344 (662)
-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+.+.++-.+. |....-.|.-.|...|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-----NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-----NLEALMALAVSYTNEG 367 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHhhhh
Confidence 3557888999999999888875 456888888888888888888888888888887543 6778888888999999
Q ss_pred CHHHHHHHHHHHHHhCCCCc--c---cccchHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHHcCC
Q 038801 345 NVKGLANLIIEAQKLEPSGI--V---VDRSVGFGIISACVNLGLSDKAHSILDEMNA-CGCSVGLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~--~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~ 418 (662)
.-.+|++.++...+..+.-. . ++...-.. ..+.....+....++|-++.. .+..+|..++..|.-.|.-.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 99999999988765332110 0 00000000 111122223444455555443 4445778888888888888889
Q ss_pred HHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 038801 419 TAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLD 497 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 497 (662)
+++|.+.|+..... +| |...||.|...++...+.++|+..|++.++.. |.-+.+...|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999888876 45 67888999888888888899999888888763 3333444455566677777777666655
Q ss_pred HH
Q 038801 498 EV 499 (662)
Q Consensus 498 ~~ 499 (662)
..
T Consensus 523 ~A 524 (579)
T KOG1125|consen 523 EA 524 (579)
T ss_pred HH
Confidence 43
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=5.1e-06 Score=84.12 Aligned_cols=208 Identities=13% Similarity=0.201 Sum_probs=89.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
...+...|-...|..+|+++ ..+.-+|.+|+..|+..+|..+..+..++ +||...|..+.+......-+
T Consensus 405 aell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHH
Confidence 33444444444444444433 23444444455555555554444444442 44444444444444444444
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRR 534 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (662)
++|.++++..-.+- -..+.......++++++.+.|+.-.+-++..+ .+|-.+..+..+.+++..|.+.|..
T Consensus 474 EkawElsn~~sarA-------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~--~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISARA-------QRSLALLILSNKDFSEADKHLERSLEINPLQL--GTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHHH-------HHhhccccccchhHHHHHHHHHHHhhcCccch--hHHHhccHHHHHHhhhHHHHHHHHH
Confidence 45544444332220 00011111223444444444444443333322 2344444444445555555555554
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 535 MIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 535 m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
... ..||. ..||.+-.+|.+.++-.+|...+++.. +.. .-+..+|.-.+-...+-|.+++|++.+.++
T Consensus 545 cvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-------Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 545 CVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-------KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred Hhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-------hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 443 24443 345555555555555555555555544 233 112223333333344455555555555444
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.50 E-value=6.9e-05 Score=81.47 Aligned_cols=227 Identities=10% Similarity=0.039 Sum_probs=175.8
Q ss_pred ccc-chHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 038801 366 VDR-SVGFGIISACVNLGLSDKAHSILDEMNAC-GCSV---GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440 (662)
Q Consensus 366 ~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 440 (662)
||. ..|-..|.-....++.++|.+++++.+.. ++.- -..+|.++++.-..-|.-+...++|++..+.. -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 444 34555777888889999999999988764 2111 12477777777777888888899999988752 23456
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC 520 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 520 (662)
|..|...|.+.+.+++|.++|+.|.++- .-....|...+..+.+.++.+.|..++.+..+..+-+-........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8888999999999999999999999763 255678999999999999999999999998875333334555666667777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH--HHHHHHHHHHH
Q 038801 521 KAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH--NLVDAFLYALV 597 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 597 (662)
+.|+.+.+..+|+..... .| -...|+.+|+.-.++|+.+.+..+|+++. ..++.|-. ..|.-.+..--
T Consensus 1612 k~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi-------~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI-------ELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred hcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHH-------hcCCChhHhHHHHHHHHHHHH
Confidence 899999999999998875 34 44689999999999999999999999999 77887755 67777776666
Q ss_pred ccCchHH
Q 038801 598 KGGFFDA 604 (662)
Q Consensus 598 ~~g~~~~ 604 (662)
+.|+-+.
T Consensus 1683 ~~Gde~~ 1689 (1710)
T KOG1070|consen 1683 SHGDEKN 1689 (1710)
T ss_pred hcCchhh
Confidence 6677443
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=3.2e-05 Score=68.41 Aligned_cols=129 Identities=9% Similarity=0.077 Sum_probs=55.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc
Q 038801 522 AGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF 601 (662)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 601 (662)
.|++++|+++++..++.+ +-|.++|.-=+...-..|+--+|++-+.+..+ .+.-|...|..+...|...|+
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--------~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--------KFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--------HhcCcHHHHHHHHHHHHhHhH
Confidence 345555555555555432 22233444333333334444445444444442 223344555555555555555
Q ss_pred hHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHh---hhhhhhHHHHHHHHhhHHHHHHHhhhCC
Q 038801 602 FDAVMQVVEKSQEMKVF-VDKWKYKQAFMENH---KKLKVAKLRKRNFKKMEALIAFKNWAGL 660 (662)
Q Consensus 602 ~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~---~~~~~a~~~~~~~~~l~p~~~~~~~~~~ 660 (662)
++.|.-.++++.=..|. |-.+..+....... -+++.+++.+++.+++.| ..++.|.||
T Consensus 170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~-~~~ral~GI 231 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP-KNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh-HhHHHHHHH
Confidence 55555555554322221 22222221111111 234445555555555555 344444443
No 114
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.50 E-value=1.9e-05 Score=74.00 Aligned_cols=188 Identities=10% Similarity=0.003 Sum_probs=122.5
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc-
Q 038801 400 SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV----GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG- 474 (662)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~- 474 (662)
......+..+...+.+.|++++|...|+++... .|+. ..+..+..++...|++++|...++++.+.. |.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCch
Confidence 345567777888889999999999999998876 3432 466778888999999999999999998764 22222
Q ss_pred --cHHHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 475 --SYLTIMTGLMEN--------HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 475 --~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
++..+..++.+. |+.+.|.+.++++.+..+-.+ ..+..+... +..... . .
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~~----~~~~~~-------~-------~ 166 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE--YAPDAKKRM----DYLRNR-------L-------A 166 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh--hHHHHHHHH----HHHHHH-------H-------H
Confidence 344444555543 566777777777766422211 112111111 000000 0 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
.....+...+.+.|++.+|+..+++..+..+ +.......+..++.++.+.|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYP-----DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCC-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455678888999999999999984322 11223467788999999999999999998887654
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=2.9e-05 Score=72.82 Aligned_cols=182 Identities=10% Similarity=0.008 Sum_probs=128.0
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh----
Q 038801 367 DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGL---GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVG---- 439 (662)
Q Consensus 367 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---- 439 (662)
....+..+...+...|++++|...++++.... +.+. ..+..+..+|.+.|++++|...++++.+. .|+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 34456677888999999999999999998864 2222 46777889999999999999999999886 34322
Q ss_pred hHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhh
Q 038801 440 NYDALIEASITS--------QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 440 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
++..+..++.+. |+.++|.+.|+++.+.. |.+......+... ..+... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~--------------~~~~~~----~-~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRM--------------DYLRNR----L-AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHH--------------HHHHHH----H-HHH
Confidence 355555566554 78999999999998774 2222222111111 110000 0 001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQF-EP-NDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.-.+...|.+.|++++|...+++..+..- .| ....+..+..++.+.|++++|..+++.+.
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22456678899999999999999987521 12 23688899999999999999999998887
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=2e-05 Score=79.96 Aligned_cols=216 Identities=14% Similarity=0.115 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
..-..+...+...|-...|..+|++... +..++.+|+..|+..+|..+..+..++ +||...|..+.
T Consensus 399 q~q~~laell~slGitksAl~I~Erlem------------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEM------------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHH------------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 3445567788899999999999988643 556888999999999999998888873 78989999998
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 490 (662)
+......-+++|.++++..-.+ .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.++.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8888877889999988876432 11222223344789999999999877765 455568988889999999999
Q ss_pred HHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 491 LMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHE 569 (662)
Q Consensus 491 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 569 (662)
.|.+.|..... ..|+ ...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+++
T Consensus 537 ~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 537 AAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999998876 3444 6789999999999999999999999999876 33445777778888899999999999998
Q ss_pred HHH
Q 038801 570 IKR 572 (662)
Q Consensus 570 m~~ 572 (662)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 874
No 117
>PLN02789 farnesyltranstransferase
Probab=98.39 E-value=0.00036 Score=67.52 Aligned_cols=209 Identities=6% Similarity=0.002 Sum_probs=122.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG-LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE 416 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (662)
..+...++.++|+.++.++.++.+. +..+|+.--.++...| +++++...++++.+.. +.+..+|+....++.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPG----NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCch----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 3344455666777777766553322 1122333333344445 4677777777777654 44555566555555555
Q ss_pred CCH--HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc---CC---
Q 038801 417 HRT--AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN---HR--- 488 (662)
Q Consensus 417 g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~--- 488 (662)
|+. +++..+++++.+...+ +..+|+...-++...|+++++++.++++++.+. -+...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 552 5667777777765322 667777777777777778888888888777663 3334555555444443 22
Q ss_pred -HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 489 -PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA----GRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 489 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
.++...+..+.+...+ -|...|+-+...+... ++..+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~P--~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANP--RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCC--CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2355666655555322 2455677777777662 34456777777766542 2245677788888875
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00012 Score=65.35 Aligned_cols=122 Identities=13% Similarity=0.172 Sum_probs=61.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHH
Q 038801 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLY 594 (662)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~ 594 (662)
+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.+.+|.-+|++|. ....|+.-+.+....
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s--------~k~~~T~~llnG~Av 215 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS--------EKTPPTPLLLNGQAV 215 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh--------cccCCChHHHccHHH
Confidence 34455566666666666641 233455555555544 244556666666665 124555555566666
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhh-hhhhhHHHHHHHHhhHHH
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHK-KLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~-~~~~a~~~~~~~~~l~p~ 651 (662)
++...|++++|..+++........ |+....+.......| +.+...+...+++..+|.
T Consensus 216 ~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 216 CHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 666666666666666666554443 443333333222223 334444444555544443
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=0.00015 Score=78.14 Aligned_cols=235 Identities=9% Similarity=0.040 Sum_probs=149.8
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHH
Q 038801 257 SSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQ-MVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCE 335 (662)
Q Consensus 257 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 335 (662)
..+..|+..+...+++++|.++.+...+.. |+ ...|-.+...+...++.+++..+ .
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv---------------------~ 88 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL---------------------N 88 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh---------------------h
Confidence 345667777778888888888887666543 44 22233333355566665555433 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK 415 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (662)
++.......++.-+..+...|.. ..-+...+..+..+|-+.|+.+++..+++++++.. +-|..+.|.+...|..
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~-----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILL-----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 23333333444333333334332 11233456678888888888888888888888887 6678888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 038801 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAF 495 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 495 (662)
. ++++|++++.+.... |...+++.++.++|.++.... +.+. +.-.++
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~----------------d~f~~i 209 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDF----------------DFFLRI 209 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccc----------------hHHHHH
Confidence 8 888888888877653 566678888888888888764 2222 223333
Q ss_pred HHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 038801 496 LDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYV 555 (662)
Q Consensus 496 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 555 (662)
.+++....+..--+.++-.+-..|-..++++++..+++.+.+. .| |.....-++.+|.
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 3444333233333445666677788888899999999999975 34 4456777777766
No 120
>PLN02789 farnesyltranstransferase
Probab=98.37 E-value=0.00056 Score=66.18 Aligned_cols=205 Identities=6% Similarity=-0.029 Sum_probs=109.5
Q ss_pred hcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc
Q 038801 303 KLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG-NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL 381 (662)
Q Consensus 303 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~ 381 (662)
..++.++|+.++.+.+...+. +..+|+.--.++...| +++++++.++++.+..++ +..+|+.....+.+.
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk----nyqaW~~R~~~l~~l 119 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-----NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK----NYQIWHHRRWLAEKL 119 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc----chHHhHHHHHHHHHc
Confidence 344555555555555544221 3334444444444444 456666666665542222 222233322223333
Q ss_pred CC--hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC---CC---
Q 038801 382 GL--SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS---QD--- 453 (662)
Q Consensus 382 ~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~--- 453 (662)
|. .+++..+++.+++.. +-|..+|+....++.+.|+++++++.++++.+.+.. |...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 43 245566666666654 456666777667777777777777777777766433 555565555544443 22
Q ss_pred -HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh
Q 038801 454 -FQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN----HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK 521 (662)
Q Consensus 454 -~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 521 (662)
.++++....+++... |.+...|+.+...+... ++..+|...+.+.... + ..+......|+..|+.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-D-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-c-CCcHHHHHHHHHHHHh
Confidence 235566666666654 56666777777666662 3345566666665542 1 1234456666666664
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.34 E-value=0.0041 Score=61.58 Aligned_cols=184 Identities=10% Similarity=0.092 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 038801 454 FQSAFSLFRDMREARIYDLKGSYLTIMTG---LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 454 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (662)
-+++..+++..++.-..-+..+|..+.+- -.+....+....+++++.......|+. +|..+|+.-.+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHH
Confidence 45566666665543322233334333321 112223566777788877776777775 68999999889999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHH
Q 038801 531 TLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVV 609 (662)
Q Consensus 531 ~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
+|.+..+.+..+ ++..+++++.-+|. ++..-|.++|+--.. ..| -+..-....+.-+..-++-..|..+|
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLk------kf~--d~p~yv~~YldfL~~lNdd~N~R~LF 458 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLK------KFG--DSPEYVLKYLDFLSHLNDDNNARALF 458 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHH------hcC--CChHHHHHHHHHHHHhCcchhHHHHH
Confidence 999999998888 67788999998886 889999999987663 222 23344467778888999999999999
Q ss_pred HHHHhCCCCCC----HHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 610 EKSQEMKVFVD----KWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 610 ~~m~~~~~~p~----~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
++....+..|+ +|...+.+=..-||+....++.++-..
T Consensus 459 Er~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 459 ERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99988866655 788888887788999988888776655
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.31 E-value=0.00036 Score=74.63 Aligned_cols=146 Identities=8% Similarity=-0.098 Sum_probs=119.1
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
.+...+..|..+..+.|++++|..+++...+. .|+.......+...+.+.+++++|+...++... ..|+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---------~~p~ 152 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---------GGSS 152 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---------cCCC
Confidence 45788999999999999999999999999984 588888888899999999999999999999977 5677
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 220 IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
......+...+....|++++|..+|++....+ +-+..++..+-.++-..|+.++|...|+...+.- .+....|+.++
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 66655555555444599999999999998743 2346778888889999999999999999988763 34455555544
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00048 Score=74.44 Aligned_cols=240 Identities=12% Similarity=0.056 Sum_probs=155.8
Q ss_pred CCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCc
Q 038801 139 LLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKP 218 (662)
Q Consensus 139 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 218 (662)
+.....+..|+..+...+++++|.++.+...+. .|....++-.+..++...++.+++.-+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 355677788888888888888888888866653 345554444444466666655444433
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
.++..+... .++..+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.. +-|..+.|.+.
T Consensus 88 ------~~l~~~~~~-~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~A 157 (906)
T PRK14720 88 ------NLIDSFSQN-LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLA 157 (906)
T ss_pred ------hhhhhcccc-cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 233333333 45544555555555432 344467777788888888888888888888876 56688888888
Q ss_pred HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH
Q 038801 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC 378 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~ 378 (662)
..|... +.++|.+.+.+.+. .+...+++.++.+++.++... .|+
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~-------------------~~i~~kq~~~~~e~W~k~~~~-----~~~----------- 201 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIY-------------------RFIKKKQYVGIEEIWSKLVHY-----NSD----------- 201 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHH-------------------HHHhhhcchHHHHHHHHHHhc-----Ccc-----------
Confidence 888888 88888877644433 266667888888888877541 122
Q ss_pred HhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNAC-GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
+++.-.++.+.+... |..--..++-.+-..|-+.++++++..+++.+.+.... |.....-++.+|.
T Consensus 202 ----d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 202 ----DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222333333344332 33334456666777888888999999999999887422 5566667777666
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.26 E-value=6.7e-05 Score=63.58 Aligned_cols=109 Identities=11% Similarity=0.097 Sum_probs=83.9
Q ss_pred HHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 494 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
.++++..+ ..|+ .+..+...+...|++++|...|+..... .| +...|..+..++...|++++|+..|+++.
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al- 85 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHAL- 85 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-
Confidence 44555444 2344 2455677788899999999999998875 45 55788888888999999999999999998
Q ss_pred hhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 573 KISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 573 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
...| +...+..+..++.+.|++++|++.++...+..+.
T Consensus 86 --------~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 86 --------MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred --------hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3445 4578888888899999999999999998776654
No 125
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.25 E-value=0.0042 Score=57.78 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=128.8
Q ss_pred HHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChh
Q 038801 229 GCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLE 308 (662)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 308 (662)
.+.-. |+...|++....+.+.. +-|...|..-..+|...|++..|+.=++...+.. .-+..+.-.+-..+-..|+.+
T Consensus 164 s~~~~-GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 164 SASGS-GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHhcC-CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 34444 88999999888888754 4566666666788888898888877776666553 234555555667777888888
Q ss_pred hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHH
Q 038801 309 SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAH 388 (662)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 388 (662)
.++..+.+.++-. ||... +|..-....+..+.++.|. .....+++.++.
T Consensus 241 ~sL~~iRECLKld------pdHK~------Cf~~YKklkKv~K~les~e-------------------~~ie~~~~t~cl 289 (504)
T KOG0624|consen 241 NSLKEIRECLKLD------PDHKL------CFPFYKKLKKVVKSLESAE-------------------QAIEEKHWTECL 289 (504)
T ss_pred HHHHHHHHHHccC------cchhh------HHHHHHHHHHHHHHHHHHH-------------------HHHhhhhHHHHH
Confidence 8888878877753 23221 1111112223333333332 233446666666
Q ss_pred HHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 389 SILDEMNACGCSVGL---GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 389 ~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
+-.+..++..-.... ..+..+-.++...|++.+|++...+..+. .|| +.++.--..+|.-...++.|+.-|+..
T Consensus 290 e~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 290 EAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666666665422112 23344455666677788888877777765 443 677777777888888888888888887
Q ss_pred HHcC
Q 038801 465 REAR 468 (662)
Q Consensus 465 ~~~~ 468 (662)
.+.+
T Consensus 368 ~e~n 371 (504)
T KOG0624|consen 368 LELN 371 (504)
T ss_pred HhcC
Confidence 7765
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.00029 Score=63.14 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=85.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhc
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA 522 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 522 (662)
.+-..+...|+-+....+..+..... +.+.......+....+.|++..|...+.+... .-.+|...|+.+.-+|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 33444445555555555544433221 22323333455555555666666666555554 2344556667777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc
Q 038801 523 GRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF 601 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 601 (662)
|+.++|..-|.+..+. .|+ ...++.|.-.+.-.|+.+.|..++.... ..+ .-|..+-.-+..+....|+
T Consensus 148 Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~-------l~~-~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 148 GRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAY-------LSP-AADSRVRQNLALVVGLQGD 217 (257)
T ss_pred cChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH-------hCC-CCchHHHHHHHHHHhhcCC
Confidence 7777777766666653 333 2455555555556677777777666666 222 1244444555566666677
Q ss_pred hHHHHHHHHH
Q 038801 602 FDAVMQVVEK 611 (662)
Q Consensus 602 ~~~A~~~~~~ 611 (662)
+++|..+...
T Consensus 218 ~~~A~~i~~~ 227 (257)
T COG5010 218 FREAEDIAVQ 227 (257)
T ss_pred hHHHHhhccc
Confidence 7766666544
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00054 Score=73.31 Aligned_cols=181 Identities=8% Similarity=-0.033 Sum_probs=119.4
Q ss_pred ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHH
Q 038801 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDA 443 (662)
Q Consensus 365 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ 443 (662)
..+...+..|.....+.|.+++|..+++...+.. +.+......+..++.+.+++++|+..+++.... .| +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 3345566667777778888888888888887763 445566677777788888888888888888776 44 4455666
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG 523 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 523 (662)
+..++.+.|++++|..+|++....+ +.+..++..+...+-..|+.++|...|.+..+. ..+....|+.++ +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~------~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHH------H
Confidence 6777778888888888888888733 555677777778888888888888888887764 223334444433 3
Q ss_pred CHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhc
Q 038801 524 RLEDAKRTLRRMIFLQF----EPNDQTYLSLINGYVTA 557 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~ 557 (662)
++..-...++++.-.+. ...+......|.-|.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 44445555665554322 22234555555555543
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.19 E-value=0.00033 Score=62.93 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=71.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-HhcCC--HH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGY-VTAEQ--YF 561 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~-~~~~~--~~ 561 (662)
.++.+++...+....+. -..+...|..+...|...|++++|...|++..+. .| +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 33445555555554442 1224556777777777777777777777777764 34 335555555543 45455 46
Q ss_pred HHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 562 SVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 562 ~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+|.+++++.. ...| +...+..+...+.+.|++++|+..++++.+..+.
T Consensus 128 ~A~~~l~~al---------~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 128 QTREMIDKAL---------ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHH---------HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7777777777 2333 3355666666677777777777777777655443
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.19 E-value=0.00031 Score=63.05 Aligned_cols=119 Identities=9% Similarity=0.050 Sum_probs=69.3
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH-HhcC
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC-VNLG 382 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~-~~~~ 382 (662)
.++.+++...+...++..+. |...|..+...|...|++++|...|++..++.+. +...+..+..++ ...|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~----~~~~~~~lA~aL~~~~g 122 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE----NAELYAALATVLYYQAG 122 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcC
Confidence 34445555555555555332 6666777777777777777777777666543222 333344444432 4445
Q ss_pred C--hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 383 L--SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 383 ~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
+ .++|.+++++..+.+ +.+...+..+...+.+.|++++|...|+++.+.
T Consensus 123 ~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 123 QHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4 366666666666654 345566666666666666666666666666655
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.19 E-value=2.5e-05 Score=66.22 Aligned_cols=112 Identities=7% Similarity=-0.024 Sum_probs=91.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHH
Q 038801 529 KRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQ 607 (662)
Q Consensus 529 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
..+|++.++. .|+. +..+..++...|++++|...|+... .+.| +...+..+..++.+.|++++|..
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---------~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLV---------MAQPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---------HcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 4566666653 5554 5567788889999999999999999 4555 45888999999999999999999
Q ss_pred HHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 608 VVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 608 ~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
.+++..+.++. ++.+..+...+...|+.++|...+++++++.|.++
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 99999988775 55666655566778999999999999999998763
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0016 Score=58.45 Aligned_cols=250 Identities=12% Similarity=0.054 Sum_probs=148.1
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
++.+.-.|++..++..-+...... -+...-..+-++|...|....... .+ +.+..+.......+...+..
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI-----~~~~~~~lqAvr~~a~~~~~ 84 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EI-----KEGKATPLQAVRLLAEYLEL 84 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cc-----ccccCChHHHHHHHHHHhhC
Confidence 444555677776666555443321 234444555566666665322111 11 22223444444444444444
Q ss_pred cCCchhHHH-HHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhcc
Q 038801 155 ANTAAPAFA-LVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYG 233 (662)
Q Consensus 155 ~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 233 (662)
.++-+.-+. +.+++.... ...+..+..+-...|.+.|++++|++.+..... -+....| +..+.+.
T Consensus 85 e~~~~~~~~~l~E~~a~~~-~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~-----------lE~~Al~--VqI~lk~ 150 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADST-DGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN-----------LEAAALN--VQILLKM 150 (299)
T ss_pred cchhHHHHHHHHHHHHhhc-cchhHHHHHHhhHHhhcCCChHHHHHHHhccch-----------HHHHHHH--HHHHHHH
Confidence 555444443 444444332 233434455556677788999999988876422 1222222 2334454
Q ss_pred CCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhh
Q 038801 234 LQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL----KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLES 309 (662)
Q Consensus 234 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 309 (662)
.+.+-|.+.++.|.+-. +..|.+-|..++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...|++++
T Consensus 151 -~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 151 -HRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred -HHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 78889999999998632 55666666655553 45678888899998764 46888888888888889999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 038801 310 ASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVK-GLANLIIEAQK 358 (662)
Q Consensus 310 A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~ 358 (662)
|..++++.+.+... ++.+...+|.+-...|... -..+.+.+++.
T Consensus 226 Ae~lL~eaL~kd~~-----dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 226 AESLLEEALDKDAK-----DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHhccCC-----CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99998888887533 5666655555555555443 34445555543
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.9e-06 Score=50.80 Aligned_cols=34 Identities=35% Similarity=0.702 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.0004 Score=62.26 Aligned_cols=160 Identities=9% Similarity=-0.003 Sum_probs=127.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
..+-..+...|+-+....+........+ -|....+..+....+.|++.+|...|++..... .+|..+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 5556677778888888888777655422 244556778999999999999999999999753 5567899999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHH-HHhhh
Q 038801 557 AEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM-ENHKK 634 (662)
Q Consensus 557 ~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~-~~~~~ 634 (662)
.|+.++|..-|.+.. .+.|+ ...++-|...+.-.|+++.|..++......+........++... ...|+
T Consensus 147 ~Gr~~~Ar~ay~qAl---------~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 147 LGRFDEARRAYRQAL---------ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred ccChhHHHHHHHHHH---------HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 999999999999998 34454 46778888899999999999999999988777666666665555 55799
Q ss_pred hhhhHHHHHHHHhh
Q 038801 635 LKVAKLRKRNFKKM 648 (662)
Q Consensus 635 ~~~a~~~~~~~~~l 648 (662)
++.|+.+..+-+..
T Consensus 218 ~~~A~~i~~~e~~~ 231 (257)
T COG5010 218 FREAEDIAVQELLS 231 (257)
T ss_pred hHHHHhhccccccc
Confidence 99999888665553
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.06 E-value=0.0002 Score=60.93 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=72.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFS 562 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~ 562 (662)
.++...+...++.+..+++-.+ .....-.+...+...|++++|...|+........|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555666666666665433321 1223333456677778888888888887775422222 234455667777788888
Q ss_pred HHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 563 VLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 563 a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
|+..++... ... .....+.....++.+.|++++|...|++.
T Consensus 104 Al~~L~~~~-------~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIP-------DEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhcc-------Ccc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888876544 222 23445666777788888888888877653
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=9e-06 Score=49.61 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLD 437 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 437 (662)
||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=1e-05 Score=48.96 Aligned_cols=33 Identities=27% Similarity=0.430 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP 542 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 542 (662)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999998887
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.0088 Score=58.76 Aligned_cols=107 Identities=11% Similarity=-0.028 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFS 459 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~ 459 (662)
.|.++.|+..++.++.. .+.|..........+.+.|+..+|.+.++++... .|+ ....-.+.++|.+.|++.+|..
T Consensus 319 ~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 319 AGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred hcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34445555555554443 1334444444445555555555555555555544 333 3334444455555555555555
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 038801 460 LFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 460 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 491 (662)
+++...... +.+...|..|..+|...|+..+
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHH
Confidence 555554443 4444555555555555555433
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=9.6e-06 Score=49.07 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCC
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRP 254 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p 254 (662)
.+||.+|.+|++. |+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~-g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKA-GDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCC
Confidence 3566666666665 66666666666666666655
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00024 Score=60.52 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
.|..++..+ ..++...+...++.+.+. .|+. ...-.+...+...|++++|...|+.+. .....|+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~-------~~~~d~~l 83 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL-------ANAPDPEL 83 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------hhCCCHHH
Confidence 466666666 489999999999999986 3433 244456677888999999999999999 44422322
Q ss_pred --HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHH
Q 038801 587 --NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFK 646 (662)
Q Consensus 587 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~ 646 (662)
.....|...+...|++++|...++......+.|..+......+...|+.+.|+..+++++
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 344557788899999999999998876666667777776778888999999999998753
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00014 Score=71.99 Aligned_cols=120 Identities=13% Similarity=0.180 Sum_probs=69.6
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHH
Q 038801 436 LDVGNYDALIEASITSQDFQSAFSLFRDMREAR--IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN 513 (662)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 513 (662)
.+......++..+....+.+.+..++.+.+... ...-..|..++++.|.+.|..+.+..+++.=.. +|+-||..++|
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n 142 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFN 142 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHH
Confidence 355556666666666666666776666666542 222223445666666666666666666655444 36666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666665555544455555555555444
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=0.00053 Score=57.69 Aligned_cols=100 Identities=10% Similarity=0.067 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV 589 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 589 (662)
.....+...+...|++++|.+.|+.....+ ..+...+..+...+...|++++|..++++.. ..+ ..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-------~~~-p~~~~~~ 88 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA-------ALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcC-CCChHHH
Confidence 345566677778888888888888887743 2255677778888888888888888888877 222 2244666
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 590 DAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..+...+...|++++|...+++..+..+.
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 77777888888888888888888766554
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.90 E-value=0.00035 Score=58.79 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
...+...+...|++++|...++.+....+ .+...|..+..++...|++++|..++++..+.+ ..+...+..+...+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 33344444555555555555555544211 134456666666666677777777776666542 223455666666666
Q ss_pred hcCCHHHHHHHHHHHH
Q 038801 556 TAEQYFSVLMMWHEIK 571 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~ 571 (662)
..|++++|+..|++..
T Consensus 97 ~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 97 ALGEPESALKALDLAI 112 (135)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6777777777776666
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.00033 Score=69.08 Aligned_cols=122 Identities=15% Similarity=0.214 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh
Q 038801 442 DALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK 521 (662)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 521 (662)
..|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+..+ -+......-...+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p--~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP--QDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHh
Confidence 344555666788888888888888775 33 455577777777778888888888776422 234455555666778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 522 AGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.++++.|+++.+++... .|+. .+|..|..+|...|+++.|+..++.+-
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888864 6766 488888888888888888887777555
No 144
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=0.0068 Score=59.54 Aligned_cols=200 Identities=13% Similarity=0.115 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 038801 384 SDKAHSILDEMNACG--CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLF 461 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (662)
+..+...-+++...+ -.|+...+...+.+......-..+..++.+-.+. .-...-|. ....+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHH
Confidence 333444444443322 2456667777776665554444444444443331 11222233 333455668888888888
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038801 462 RDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (662)
+.++..- |.+........+.+...++..+|.+.++++....+.. ....-.+..+|.+.|+..+|..++++..... +
T Consensus 330 ~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p 405 (484)
T COG4783 330 QPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQALLKGGKPQEAIRILNRYLFND-P 405 (484)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence 8877662 5555555555567777888888888888877642222 3445566777778888888888887777652 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 542 PNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 542 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
-|...|..|..+|...|+..++..-.-+ .+...|+++.|+..+....+.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAE-------------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHH-------------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 3557788888888887777766543332 344668888888877777554
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.0002 Score=70.88 Aligned_cols=124 Identities=10% Similarity=0.021 Sum_probs=70.6
Q ss_pred CcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 038801 363 GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC--GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440 (662)
Q Consensus 363 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 440 (662)
+...+...+..+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..+.+..++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33444445555555555555566666655555443 1112223445666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 486 (662)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666555555555555555555444
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0095 Score=53.28 Aligned_cols=191 Identities=12% Similarity=0.053 Sum_probs=113.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-cccccchHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 038801 343 NGNVKGLANLIIEAQKLEPSG-IVVDRSVGF-GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (662)
..+.++.++++.++..-.+.| ..++..+.. .++-+....|+.+.|...++++.+.- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 345566666666655433344 444443332 34555566677777777777776652 333333222222344567777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 500 (662)
+|.++|+.+.+.. +.|.++|-.-+...-..|+--+|++-+.+-.+. ...|...|.-+...|...|+++.|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777777664 225566665565666666666777666666655 35666777777777777777777777777776
Q ss_pred hCCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 038801 501 EDPRVEVKTHDWNSIIHAFCKA---GRLEDAKRTLRRMIFL 538 (662)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 538 (662)
-..+.. ...+..+...+.-. .+.+.|.+.|.+..+.
T Consensus 182 l~~P~n--~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQPFN--PLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 543332 23344444444333 3566778888888764
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.00069 Score=66.89 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 484 (662)
....|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++..+.. +.+...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3344555556667777777777777766 244 33446666667777777777777777553 344444454556677
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 485 ENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 485 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
+.++.+.|.++.++..+. .|+ ..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 778888888888877763 333 45788888888888888888888887663
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=3.9e-05 Score=45.15 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887664
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4.2e-05 Score=44.98 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=15.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 440 NYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.73 E-value=0.00038 Score=53.60 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQF-EPNDQTYLSLINGYVTA--------EQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
...|..+...|++...-.+|+.++..|+ -|+..+|+.++.+.++. ++.-..+.++++|. ..+++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-------~~~lK 101 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-------SNKLK 101 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-------HhccC
Confidence 4455666667999999999999999999 89999999999998874 24556889999999 88999
Q ss_pred ccHHHHHHHHHHHHcc
Q 038801 584 FEHNLVDAFLYALVKG 599 (662)
Q Consensus 584 p~~~~~~~l~~~~~~~ 599 (662)
|+..||+.++..+.+.
T Consensus 102 P~~etYnivl~~Llkg 117 (120)
T PF08579_consen 102 PNDETYNIVLGSLLKG 117 (120)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999988753
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.73 E-value=0.0004 Score=53.47 Aligned_cols=77 Identities=16% Similarity=0.260 Sum_probs=48.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGC-SVGLGVYVPTLKAYCKEH--------RTAEATQLVMDISSSGLQLDVGNYDAL 444 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~l 444 (662)
.|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 45555555777777777777777777 677777777776666542 233445566666666666666666666
Q ss_pred HHHHHc
Q 038801 445 IEASIT 450 (662)
Q Consensus 445 i~~~~~ 450 (662)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 665543
No 152
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.67 E-value=0.11 Score=55.09 Aligned_cols=228 Identities=13% Similarity=0.058 Sum_probs=146.2
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHH--hccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHL--SSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSM 152 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (662)
|......+++..|+.....+.++. |+ ..|..++.++ .+.|+.+++...++.. ......|..|...+-..|
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~-----~~~~~~D~~tLq~l~~~y 87 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEAL-----YGLKGTDDLTLQFLQNVY 87 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhh-----ccCCCCchHHHHHHHHHH
Confidence 345566889999999999988653 22 2355566655 4557766666555543 222223888999999999
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhc
Q 038801 153 RNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCY 232 (662)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 232 (662)
.+.+..++|..++++..... |. ......+..+|.|.+++.+-.++=-++.+ .+..+...|=++++....
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~~--P~-eell~~lFmayvR~~~yk~qQkaa~~LyK--------~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQKY--PS-EELLYHLFMAYVREKSYKKQQKAALQLYK--------NFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHhhhhHHHHHHHHHHhhC--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCcccchHHHHHHHHHH
Confidence 99999999999999998743 45 44455566677788877765544444433 144455555566666554
Q ss_pred cCCChh---------HHHHHHHHHHhcCCCC-CcccHHHHHHHHHHcCCHHHHHHHHH-HHHhcCCCCcHHhHHHHHHHH
Q 038801 233 GLQSVS---------DAEKVIETMSVLGVRP-NESSFGFLAYLYALKGLQEKIVELES-LMNEFGFSSQMVFYSSLISGY 301 (662)
Q Consensus 233 ~~~~~~---------~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~ 301 (662)
.....+ -|.+.++.+.+.+-+. +..-...-...+-..|++++|.+++. ...+.-...+...-+.-++.+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 422332 2555666665543111 11222223355667899999999983 333333334455556778888
Q ss_pred HhcCChhhHHHHHHHHHcCC
Q 038801 302 VKLGNLESASRTILLCLGGG 321 (662)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~ 321 (662)
...+++.+..++-.+.+...
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcChHHHHHHHHHHHHhC
Confidence 89999999888877777764
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.67 E-value=0.0033 Score=60.36 Aligned_cols=206 Identities=12% Similarity=0.126 Sum_probs=112.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC---C--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQ---L--DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
..|-..|++++|.+.|.+..+...+ + -...|.....+|-+. ++++|...+++.. ..|..
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~---------------~~y~~ 106 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI---------------EIYRE 106 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH---------------HHHHh
Confidence 4566667777777666655322100 0 012233333333333 6666666655543 44667
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA-GRLEDAKRTLRRMIFL----QFEPN--DQTYLSLINGYVTAE 558 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~ 558 (662)
.|+...|-+.+.++ ...|-.. |++++|.+.|++..+. | .+. ..++..+...+.+.|
T Consensus 107 ~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 107 AGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp CT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 77776665555544 3445555 7888888888887752 2 221 146777888899999
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC--CC-HHhHH--HHHHHHh
Q 038801 559 QYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF--VD-KWKYK--QAFMENH 632 (662)
Q Consensus 559 ~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~-~~~~~--~~~~~~~ 632 (662)
++++|+++|+++....... ...+.+. ..+-..+-++...|+...|.+.+++..+..+. .. -...+ +.-+...
T Consensus 170 ~y~~A~~~~e~~~~~~l~~--~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLEN--NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCH--CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhhcc--cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999988433211 1123333 23333444667789999999999999766542 22 22222 3344455
Q ss_pred hhhhhhHHHHH---HHHhhHHH
Q 038801 633 KKLKVAKLRKR---NFKKMEAL 651 (662)
Q Consensus 633 ~~~~~a~~~~~---~~~~l~p~ 651 (662)
+|.+....++. .+.+|+|+
T Consensus 248 ~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---HH
T ss_pred CCHHHHHHHHHHHcccCccHHH
Confidence 66666555554 44444444
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.016 Score=55.74 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE-----PNDQ-TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
.++..+...+.+.|++++|.++|++....-.. .+.. .|-..+-++...||...|.+.+++.... ..++.
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~-----~~~F~ 230 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ-----DPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT-----STTST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCC
Confidence 35667778889999999999999988864322 1222 3334444666679999999999988722 11332
Q ss_pred cc--HHHHHHHHHHHHc--cCchHHHHHHHHHH
Q 038801 584 FE--HNLVDAFLYALVK--GGFFDAVMQVVEKS 612 (662)
Q Consensus 584 p~--~~~~~~l~~~~~~--~g~~~~A~~~~~~m 612 (662)
.+ ......|+.++-. ...+++|+.-|+.+
T Consensus 231 ~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 231 SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 22 3566777777743 33355566666554
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.0016 Score=53.18 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
++-.++..+.+.|++++|.+.|+.+.+. .|+ ...+..+..++.+.|++++|+..|+++....+ +.....
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~ 76 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-----KSPKAP 76 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-----CCCccc
Confidence 4555666677778888888888777764 233 23555677777777888888888887772111 111123
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..+..+..++.+.|+.++|.+.++++.+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 45666667777788888888888877666543
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00027 Score=53.49 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=44.0
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHcc
Q 038801 522 AGRLEDAKRTLRRMIFLQFE-PNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKG 599 (662)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 599 (662)
.|+++.|+.+++++.+..-. ++...+..+..+|.+.|++++|+.++++ . ...++. .....+..++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---------~~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---------KLDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---------THHHCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---------CCCCCCHHHHHHHHHHHHHh
Confidence 46667777777776664211 1233444466666777777777777665 3 122222 3333445666677
Q ss_pred CchHHHHHHHHH
Q 038801 600 GFFDAVMQVVEK 611 (662)
Q Consensus 600 g~~~~A~~~~~~ 611 (662)
|++++|++++++
T Consensus 72 ~~y~eAi~~l~~ 83 (84)
T PF12895_consen 72 GKYEEAIKALEK 83 (84)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 777777776654
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0017 Score=62.13 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
|..++...-+.+..+.|..+|.+..+......++....+++.-+ ..++.+.|.++|+...+. +.-+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 33344444444444444444444443323333333333333221 123444455555555543 2223344445555555
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCccc---HHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFE---HNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
+.|+.+.|..+|++.. .. +.++ ..+|...+..-.+.|+++.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i-------~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAI-------SS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHC-------CT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHH-------Hh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555 11 1111 13555555555555555555555555443
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.51 E-value=0.0011 Score=54.29 Aligned_cols=107 Identities=10% Similarity=-0.020 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC----CC
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF----VD 620 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~ 620 (662)
.++..+...+...|++++|.+.|+++....+ +.......+..+..++.+.|++++|...++.+....+. +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 77 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP-----KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPD 77 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccH
Confidence 3566778888899999999999999983211 11112345667888999999999999999999876544 44
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHh
Q 038801 621 KWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKN 656 (662)
Q Consensus 621 ~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~~~ 656 (662)
.+..+.......|+.+.|...++++++..|.+..-.
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 555556666778999999999999999988765433
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.49 E-value=0.002 Score=49.86 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
|..+...+...|++++|...+++..+. .|+ ...+..+...+...+++++|.+.+++.. ... ..+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~~-~~~~~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKAL-------ELD-PDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCC-CcchhHHH
Confidence 444555566667777777777666653 232 2455556666666677777777776666 211 11224555
Q ss_pred HHHHHHHccCchHHHHHHHHHHHh
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
.+...+...|++++|...++...+
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHc
Confidence 566666666777777766666544
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.47 E-value=0.0015 Score=57.17 Aligned_cols=116 Identities=10% Similarity=0.099 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhh
Q 038801 437 DVGNYDALIEASIT-----SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 437 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
|-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+-+ |. ..|. ..
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~----------------fvp~-n~ 107 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GK----------------FVPR-NF 107 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CC----------------cccc-cH
Confidence 55556666655543 35566666666667777776666677766666654 22 1111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
+.++-.-|- .+-+-|++++++|...|+-||..++..|++.|++.+ .++.-+.+|.-+++
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s---~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS---HPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc---HHHHHHHHHHHHHH
Confidence 222222222 245679999999999999999999999999996644 45555555544443
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.46 E-value=0.00027 Score=53.50 Aligned_cols=81 Identities=11% Similarity=0.226 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVL 564 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~ 564 (662)
.|+++.|+.+++++.+..+..++...+-.+..+|.+.|++++|..++++ .+ ..|+. ...-.+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666665422222334444567777777777777777776 22 22322 34445566777777777777
Q ss_pred HHHHH
Q 038801 565 MMWHE 569 (662)
Q Consensus 565 ~~~~~ 569 (662)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.46 E-value=0.0038 Score=54.72 Aligned_cols=110 Identities=8% Similarity=0.008 Sum_probs=73.9
Q ss_pred HHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN--DQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
...+..+.+..+..-....|..+...+...|++++|...|++.......+. ..+|..+...+...|++++|++.+++.
T Consensus 19 ~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 19 ADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444432223333455678888888889999999999999986532221 247888889999999999999999998
Q ss_pred HHhhcccCCCCCccc-HHHHHHHHHHHH-------ccCchHHHHHHHHH
Q 038801 571 KRKISTDGQKGIKFE-HNLVDAFLYALV-------KGGFFDAVMQVVEK 611 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 611 (662)
.+ +.|+ ..++..+...+. +.|++++|...+++
T Consensus 99 l~---------~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 99 LE---------RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HH---------hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 83 2333 244555555555 66776655555544
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.43 E-value=0.0027 Score=63.07 Aligned_cols=101 Identities=10% Similarity=-0.016 Sum_probs=59.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHH
Q 038801 518 AFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYA 595 (662)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~ 595 (662)
.+...|++++|++.|+++++. .| +...|..+..+|...|++++|+..++++. .+.|+ ...|..+..+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---------~l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAI---------ELDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCcCCHHHHHHHHHH
Confidence 344566666777777666654 33 33456666666666677777777666666 23332 3555666666
Q ss_pred HHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 038801 596 LVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM 629 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~ 629 (662)
|...|++++|+..++++.+.++.-.....++..|
T Consensus 80 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6667777777777766666555433334444444
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0061 Score=58.29 Aligned_cols=146 Identities=16% Similarity=0.180 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSG-LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
+|..+++..-+.+..+.|..+|.+..+.+ +..++....++|. |...++.+.|..+|+...+. .+.+...+...++-+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56666666666666777777777776432 1122222222222 22235556677777776655 355555666666777
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038801 484 MENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 554 (662)
...++.+.|..+|++.....+... ....|...+.--.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 777777777777777766533333 3457888888888889999999998888874 55544444444433
No 165
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.0025 Score=55.84 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC----------------CCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITS----------------QDFQSAFSLFRDMREARIYDLKGSYLTIM 480 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 480 (662)
|..+=....+..|.+-|+.-|..+|+.|++.+-+. .+.+-|++++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444444444444555555555555555444331 23455666666776666666666666666
Q ss_pred HHHHhcCC
Q 038801 481 TGLMENHR 488 (662)
Q Consensus 481 ~~~~~~~~ 488 (662)
+.+.+.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 66665554
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.33 E-value=0.012 Score=49.17 Aligned_cols=90 Identities=7% Similarity=0.028 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVD 590 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~ 590 (662)
-.+..-+...|++++|..+|+-.... .|.. .-|-.|..+|-..|++++|+..|.... -+.| |...+-
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---------~L~~ddp~~~~ 107 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---------QIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------hcCCCCchHHH
Confidence 34455567889999999999988864 5544 566778788888899999999999888 3334 457888
Q ss_pred HHHHHHHccCchHHHHHHHHHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.+..++.+.|+.+.|.+.|+...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 88899999999999999998764
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.32 E-value=0.01 Score=61.64 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=58.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHH
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHN 587 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 587 (662)
+...|.++.-.+...|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++.. .+.|...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~---------~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF---------NLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------hcCCCCc
Confidence 3456777766667789999999999999985 5788899999999999999999999999888 4566655
Q ss_pred HHH
Q 038801 588 LVD 590 (662)
Q Consensus 588 ~~~ 590 (662)
+|.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 553
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.31 E-value=0.12 Score=48.22 Aligned_cols=178 Identities=12% Similarity=0.029 Sum_probs=102.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh----HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQLDVGN----YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 484 (662)
....+.+.|++++|.+.|+++... .|+... .-.+..++.+.+++++|...+++..+........-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 334455677777777777777765 333221 12345666777777777777777776643222234444444433
Q ss_pred h--cC---------------C---HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 485 E--NH---------------R---PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 485 ~--~~---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
. .+ + ...|...|+.++++ |=...-..+|...+..+... .-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~---la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDR---LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHH---HHH
Confidence 1 10 1 22344444444443 22223344454444443321 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.-+ .+.+-|.+.|.+..|+.-++.+.+.++ +..........++.+|.+.|..++|..+.....
T Consensus 177 ~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YEL-SVAEYYTKRGAYVAVVNRVEQMLRDYP-----DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH-HHHHHHHHcCchHHHHHHHHHHHHHCC-----CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 112 445667888999999999999986554 233344667778889999999999988876653
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.28 E-value=0.0042 Score=47.95 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRD 463 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (662)
+..+..++...|++++|.+.|+...+... .+...+..+...+...|++++|...+..
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333334444444444444444333211 1222333333344444444444444433
No 170
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.21 Score=48.46 Aligned_cols=126 Identities=9% Similarity=0.088 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
.+.+..|.-+...|+...|.++-.+.. .||..-|...+.+++..++|++-..+-+. .-+ +.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHH
Confidence 355556667777888888888877664 57888888889999999998887765432 222 35788888999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 484 MENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
.+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.-.+.. |......+...+..
T Consensus 248 ~~~~~~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPG 303 (319)
T ss_pred HHCCCHHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCC
Confidence 9999888888887762 23667778888888888877654433 45555555544433
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.25 E-value=0.01 Score=52.25 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN--DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
...|..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|+..+++.. ...|+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------~~~p~~ 105 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL---------ELNPKQ 105 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCccc
Confidence 34566677777788888888888888876432222 2567777788888888888888888887 23343
Q ss_pred HHHHHHHHHHHHccCchHHHH
Q 038801 586 HNLVDAFLYALVKGGFFDAVM 606 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~ 606 (662)
...+..+..++...|+...+.
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHh
Confidence 345556666677766644433
No 172
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.24 E-value=0.0052 Score=56.52 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=66.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH
Q 038801 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQY 560 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~ 560 (662)
-+.+.+++++|+..|.+.++- ..-|.+.|.--..+|++.|.++.|.+-.+..+. +.|.. .+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 466677777777777777763 122455666677777777777777777777665 35544 4777777777777777
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcccHHHHHHH
Q 038801 561 FSVLMMWHEIKRKISTDGQKGIKFEHNLVDAF 592 (662)
Q Consensus 561 ~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 592 (662)
++|++.|++.. .+.|+..+|..=
T Consensus 166 ~~A~~aykKaL---------eldP~Ne~~K~n 188 (304)
T KOG0553|consen 166 EEAIEAYKKAL---------ELDPDNESYKSN 188 (304)
T ss_pred HHHHHHHHhhh---------ccCCCcHHHHHH
Confidence 77777777777 567776666443
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.17 Score=49.07 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH
Q 038801 294 YSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG 373 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 373 (662)
.+.-|.-+...|+...|.++. .-.+ .|+..-|-..+.+++..++|++-.++-.. + -.+.-|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~-k~Fk-------v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k--------KsPIGyep 242 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLK-KEFK-------VPDKRFWWLKIKALAENKDWDELEKFAKS-K--------KSPIGYEP 242 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHH-HHcC-------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C--------CCCCChHH
Confidence 333444455556666665542 2221 13555666666666666666655544321 1 12244555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLV 426 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (662)
.+.+|.+.|+..+|..+... ..+..-+..|.++|++.+|.+.-
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666655544 11244555666666666665543
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.21 E-value=0.024 Score=47.51 Aligned_cols=97 Identities=10% Similarity=-0.010 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
.-.+...+...|++++|..+|+.+...... +..-|-.|..++-..|++++|+..|....... +.+...+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334455567788888888888887765321 55666677777777888888888888887776 5666777777778888
Q ss_pred cCCHHHHHHHHHHHhhCCC
Q 038801 486 NHRPELMAAFLDEVVEDPR 504 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~ 504 (662)
.|+.+.|.+-|+..+...+
T Consensus 116 lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICG 134 (157)
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 8888888877777666433
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.16 E-value=0.032 Score=58.12 Aligned_cols=88 Identities=7% Similarity=-0.056 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchH
Q 038801 525 LEDAKRTLRRMIFLQ-FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFD 603 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 603 (662)
+..+.+..++..... ...+...|..+.-.....|++++|...++++. .+.|+...|..+...+...|+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---------~L~ps~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---------DLEMSWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---------HcCCCHHHHHHHHHHHHHcCCHH
Confidence 344555555544321 23345678877666777899999999999999 45578889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCH
Q 038801 604 AVMQVVEKSQEMKVFVDK 621 (662)
Q Consensus 604 ~A~~~~~~m~~~~~~p~~ 621 (662)
+|.+.+++....++....
T Consensus 471 eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 471 LAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHhcCCCCch
Confidence 999999999888877543
No 176
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.12 Score=44.14 Aligned_cols=135 Identities=10% Similarity=0.057 Sum_probs=84.5
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 435 QLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
.|++..--.|..++.+.|+..+|...|++....-...|......+.++....++...|...++.+.+.++-.-+...--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555666666677777777777766665545556566666666666677777777777666654322222334456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+...|...|+++.|+.-|+...+. .|+...-.-....+.+.|+.+++..-+.++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 677888889999999999988874 6665433333344566676666554444443
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.13 E-value=0.037 Score=56.13 Aligned_cols=120 Identities=10% Similarity=-0.006 Sum_probs=63.5
Q ss_pred HHHHHHhcCCc--hhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHH
Q 038801 148 LLGSMRNANTA--APAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNA 225 (662)
Q Consensus 148 ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (662)
.=++|.+-++. -+-+.-++++.++|..|+.. ++...|+-.|++.+|-++|.+.
T Consensus 604 ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i----LlA~~~Ay~gKF~EAAklFk~~--------------------- 658 (1081)
T KOG1538|consen 604 ARKAYIRVRDLRYLELISELEERKKRGETPNDL----LLADVFAYQGKFHEAAKLFKRS--------------------- 658 (1081)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH----HHHHHHHhhhhHHHHHHHHHHc---------------------
Confidence 33444444433 33445566777777666543 3556667788888888888763
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcC
Q 038801 226 ALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLG 305 (662)
Q Consensus 226 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 305 (662)
|.-..|+++|.+|+-. -...-+...|..++-..+.++-.+.. -|..--.+..+++...|
T Consensus 659 ---------G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaG 717 (1081)
T KOG1538|consen 659 ---------GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAG 717 (1081)
T ss_pred ---------CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhccc
Confidence 5556666666665421 12234445555555444444332221 11111123345555667
Q ss_pred ChhhHHHH
Q 038801 306 NLESASRT 313 (662)
Q Consensus 306 ~~~~A~~~ 313 (662)
+.++|..+
T Consensus 718 e~~KAi~i 725 (1081)
T KOG1538|consen 718 EHVKAIEI 725 (1081)
T ss_pred chhhhhhh
Confidence 77777665
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.0011 Score=60.68 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=77.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHH
Q 038801 552 NGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFM 629 (662)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~ 629 (662)
.-+.+.++|.+|+..|.+.+ .+.|+ .+.|.--..+|.+.|.++.|++-.+...+.++. ...|..+..++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34567899999999999999 56665 466677788899999999999999998776654 34667777777
Q ss_pred HHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 630 ENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 630 ~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
...|++++|.++++++++++|.++
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcH
Confidence 888999999999999999999877
No 179
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.12 E-value=0.0011 Score=47.14 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=51.6
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
+...+.+.|++++|.+.++++.+..+. ++.+..+...+...|+.+.|...++++++++|.++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788999999999999999988865 56777777777888999999999999999998753
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.0082 Score=52.63 Aligned_cols=94 Identities=5% Similarity=-0.095 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHH
Q 038801 257 SSFGFLAYLYALKGLQEKIVELESLMNEFGFSS--QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYC 334 (662)
Q Consensus 257 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 334 (662)
..|..+...+...|++++|...++........+ ...++..+...|...|+.++|...+.+.+...+. ...++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-----~~~~~~ 110 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-----LPQALN 110 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----cHHHHH
Confidence 345555566667788888888888877653222 1346777888888888888888888777765321 344555
Q ss_pred HHHHHHH-------hcCCHHHHHHHHHH
Q 038801 335 EVVKGFL-------QNGNVKGLANLIIE 355 (662)
Q Consensus 335 ~li~~~~-------~~~~~~~a~~~~~~ 355 (662)
.+...+. ..|+++.|+..+++
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555555 55565555444443
No 181
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.09 E-value=0.0097 Score=56.87 Aligned_cols=137 Identities=12% Similarity=-0.013 Sum_probs=89.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHH---HhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHH
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDE---VVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-----NDQ 545 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~ 545 (662)
.|..|...|.-.|+++.|+...+. +.+.+|-+. ....+..+..++.-.|+++.|.+.|+.....-++. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666667788887766543 222233222 23467778888888899999998887755421111 223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+-.+|...|.-..++++|+.++.+-....++..+ ..-....+..|..++...|..+.|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D--riGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED--RIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4557777777778888898888776644432211 11234678888999999999999888876654
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.09 E-value=0.22 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=16.8
Q ss_pred HHHHHccCchHHHHHHHHHHHhC
Q 038801 593 LYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
-.+|.++|+-.||.++++++...
T Consensus 824 qkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 824 QKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHhcchHHHHHHHHHhhhh
Confidence 34677888888888888887544
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.08 E-value=0.056 Score=46.01 Aligned_cols=99 Identities=10% Similarity=0.041 Sum_probs=49.3
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HH
Q 038801 470 YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND---QT 546 (662)
Q Consensus 470 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~ 546 (662)
.|+...-..|..++...|+..+|...|.+...- ...-|....-.+.++....++...|...++.+.+.. |+. .+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~ 162 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDG 162 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCc
Confidence 445445555555555555555555555555442 223344444444555555555555555555555431 211 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 547 YLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
--.+.+.+...|++.+|..-|+...
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHH
Confidence 3334445555555555555555555
No 184
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.08 E-value=0.35 Score=47.49 Aligned_cols=352 Identities=9% Similarity=0.066 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcC----CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCcHHh
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVLG----VRPNESSFGFLAYLYALKGLQEKIVELESLMNE---FGFSSQMVF 293 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~---~g~~~~~~~ 293 (662)
..=+...+.+... |++.++..++++|...= ..-+..+|+.++-.+++. +|-++++ ..+-|| .
T Consensus 129 ~l~~i~a~sLIe~-g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd--y 197 (549)
T PF07079_consen 129 FLDEIEAHSLIET-GRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD--Y 197 (549)
T ss_pred HHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH--H
Confidence 3445666677776 99999999999887643 347888888866555443 2333322 223333 1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCcccccchH
Q 038801 294 YSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN--GNVKGLANLIIEAQKLEPSGIVVDRSVG 371 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 371 (662)
| -+|-.|.+.=..-++.. |. ...|.......++....-. .+..--+++++.... .-+.|+....
T Consensus 198 Y-emilfY~kki~~~d~~~-Y~---------k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~---~yv~p~~~LV 263 (549)
T PF07079_consen 198 Y-EMILFYLKKIHAFDQRP-YE---------KFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN---FYVHPNYDLV 263 (549)
T ss_pred H-HHHHHHHHHHHHHhhch-HH---------hhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh---hccCCchhHH
Confidence 2 23334433211111111 11 1222233333333332211 111112222322222 4455553222
Q ss_pred H-HHHHHHHhcCChHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHH----
Q 038801 372 F-GIISACVNLGLSDKAHSILDEMNACGCSV----GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYD---- 442 (662)
Q Consensus 372 ~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---- 442 (662)
. .++..+.. +.+++..+.+.+....+.+ =+.++..++....+.++...|...+.-+... .|+...-.
T Consensus 264 i~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Klll 339 (549)
T PF07079_consen 264 IEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLL 339 (549)
T ss_pred HHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhc
Confidence 2 23333333 5566666655554432211 2346777788888888888888888777654 44433211
Q ss_pred ---HHHHHHHcC----CCHHHHHHHHHHHHHcCCCCCcccHHHHH---HHHHhcCC-HHHHHHHHHHHhhCCCCccchhh
Q 038801 443 ---ALIEASITS----QDFQSAFSLFRDMREARIYDLKGSYLTIM---TGLMENHR-PELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 443 ---~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll---~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
.+-+..+.. -+...=+.+|+.....++ ........|+ .-+-+.|. -+.|.++++.+.+-. .-|..+
T Consensus 340 s~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di-DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--~yD~ec 416 (549)
T PF07079_consen 340 SPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI-DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--NYDIEC 416 (549)
T ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--cccHHH
Confidence 122222211 123344455555554443 1112222233 23444454 678888888887631 112222
Q ss_pred HHHHH----HHHHhc---CCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHHHHhhcccC
Q 038801 512 WNSII----HAFCKA---GRLEDAKRTLRRMIFLQFEPND----QTYLSLING--YVTAEQYFSVLMMWHEIKRKISTDG 578 (662)
Q Consensus 512 ~~~li----~~~~~~---g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~ 578 (662)
-|.+. ..|.++ ..+.+-..+-+-+.+.|+.|-. ..-|.|.+| +..+|++.++.-.-.-+.
T Consensus 417 ~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~------- 489 (549)
T PF07079_consen 417 ENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT------- 489 (549)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-------
Confidence 22222 233322 2233344444445567877743 344555443 345799999887665555
Q ss_pred CCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 579 QKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 579 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.+.|++.+|..++-++....++++|..++.++.
T Consensus 490 --~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 490 --KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred --HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 688999999999999999999999999998864
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.06 E-value=0.0018 Score=46.81 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhh-hhhhhHHHHHHHHhhHH
Q 038801 585 EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHK-KLKVAKLRKRNFKKMEA 650 (662)
Q Consensus 585 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~-~~~~a~~~~~~~~~l~p 650 (662)
+..+|..+...+.+.|++++|+..|++..+.++. +..+..+...+...| +.+.|.+.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567888899999999999999999999887765 445555555556668 79999999999999987
No 186
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.06 E-value=0.012 Score=58.55 Aligned_cols=89 Identities=19% Similarity=0.106 Sum_probs=50.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 490 (662)
..+...|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 4445566666666666666655221 44555556666666666666666666666553 333444555555555555555
Q ss_pred HHHHHHHHHhh
Q 038801 491 LMAAFLDEVVE 501 (662)
Q Consensus 491 ~a~~~~~~~~~ 501 (662)
+|...|++..+
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.11 Score=50.11 Aligned_cols=165 Identities=10% Similarity=0.008 Sum_probs=100.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCccchh-------------
Q 038801 446 EASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG--LMENHRPELMAAFLDEVVEDPRVEVKTH------------- 510 (662)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~------------- 510 (662)
.++...|+.++|..+-....+..- . ..+..++++ +.-.++.+.+...|++...- .|+..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~-~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA-T--NAEALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc-c--hhHHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHH
Confidence 355667888888777666665431 1 234444443 33456667777777765542 22211
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFL---QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH- 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~- 586 (662)
.+..=.+-..+.|++..|.+.|.+.+.. .++|+...|.-...+..+.|+.++|+.--++.. .+.+.-
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---------~iD~syi 321 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---------KIDSSYI 321 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---------hcCHHHH
Confidence 1122223445788999999999998863 344555667777777788899999998887777 333221
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHH
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYK 625 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 625 (662)
..|..-..++.-.++|++|++-++++.+..-.+.+-..+
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 222223334556788999999998887665544443333
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.04 E-value=0.11 Score=48.38 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 397 (662)
....+...|++++|.+.|+++....+.+.. -......+..++.+.+++++|...+++.++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~-a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344445566666666666665542222100 0000112445555556666666666555554
No 189
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.03 E-value=0.027 Score=49.50 Aligned_cols=87 Identities=9% Similarity=-0.082 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD--VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 481 (662)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555556666666666666666654422221 2455566666666666666666666666543 223334444444
Q ss_pred HHHhcCCHHH
Q 038801 482 GLMENHRPEL 491 (662)
Q Consensus 482 ~~~~~~~~~~ 491 (662)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555554433
No 190
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.26 Score=47.76 Aligned_cols=166 Identities=14% Similarity=0.002 Sum_probs=104.8
Q ss_pred ccHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH--HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHH-
Q 038801 257 SSFGFLA-YLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISG--YVKLGNLESASRTILLCLGGGNMEQSDFSKET- 332 (662)
Q Consensus 257 ~t~~~li-~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~- 332 (662)
.++..+- .++.-.|+.++|.++-...++.. + ...+..++++ +--.++.+.|..-|.+.+.-. |+-..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld------pdh~~s 239 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD------PDHQKS 239 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccC------hhhhhH
Confidence 3444332 34556788888877766666543 1 2223333333 223466777777776666542 12111
Q ss_pred ------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 038801 333 ------------YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCS 400 (662)
Q Consensus 333 ------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 400 (662)
|..=.+-..+.|++..|.+.|.+...+.|.+..++...|.....+..+.|+.++|+.-.+.....+ .
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~ 318 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-S 318 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-H
Confidence 111122345788999999999999888888888888888888888889999999988887776643 1
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 401 VGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
.-+..|-.-..++.-.++|++|.+-|+...+.
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11122222334455567888888888877665
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.98 E-value=0.37 Score=46.28 Aligned_cols=50 Identities=16% Similarity=0.135 Sum_probs=25.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 415 KEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
+.|+.+.|..+-+..-.. .|. ...+...+...|..|+|+.|+++++.-+.
T Consensus 166 r~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 166 RLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred hcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 345555555555544433 222 23445555555555666666555555443
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.038 Score=47.02 Aligned_cols=76 Identities=21% Similarity=0.393 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV 589 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 589 (662)
+...++..+...|++++|.++.+.+... .| |...|..+|.+|...|+..+|++.|+++.+.+.+ +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~--elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLRE--ELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--HHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH--HhCcCcCHHHH
Confidence 5677788888999999999999999985 45 5679999999999999999999999999877765 56899988654
Q ss_pred H
Q 038801 590 D 590 (662)
Q Consensus 590 ~ 590 (662)
.
T Consensus 140 ~ 140 (146)
T PF03704_consen 140 A 140 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 193
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.88 E-value=1.1 Score=49.82 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFL 496 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 496 (662)
+++++|+..+.++. ...|.-.+..--+.|.+.+|+.++..=.+.. ...|.+...-+...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~----k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEKQ----KVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHHH----HHHHHHHHHHHHHhccccHHHHHH
Confidence 56666666665553 3345555555567788888887774322211 124555555666677888887777
Q ss_pred HHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 497 DEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ--TYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
+..-+ ..--+.+|..+|+|.+|+.+..++.. .-|.. +-..|+.-+...+++-+|-++..+..
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~--- 1026 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL--- 1026 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh---
Confidence 76543 24567788889999999999888763 22332 33677788888899999988888777
Q ss_pred cccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 575 STDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 575 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
. .| ...+..++++..+++|..+.....
T Consensus 1027 ----s---d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1027 ----S---DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ----c---CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1 11 223445777788888888876654
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.87 E-value=0.031 Score=45.07 Aligned_cols=89 Identities=17% Similarity=0.146 Sum_probs=37.1
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCC
Q 038801 448 SITSQDFQSAFSLFRDMREARIYDL--KGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGR 524 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 524 (662)
+-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..+|++.....+-.+ +......+..++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 3344445555555555444443222 12233333444444444444444444443311100 11111112234455666
Q ss_pred HHHHHHHHHHHH
Q 038801 525 LEDAKRTLRRMI 536 (662)
Q Consensus 525 ~~~A~~~~~~m~ 536 (662)
.++|++.+-...
T Consensus 91 ~~eAl~~~l~~l 102 (120)
T PF12688_consen 91 PKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHH
Confidence 666666655444
No 195
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.72 Score=47.79 Aligned_cols=207 Identities=13% Similarity=0.059 Sum_probs=111.5
Q ss_pred CccHHHHHHHHHHHhccCCChhHHHHHHHHHHhc-CCCCCcccHHH----H--HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 038801 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVL-GVRPNESSFGF----L--AYLYALKGLQEKIVELESLMNEFGFSS 289 (662)
Q Consensus 217 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~----l--i~~~~~~g~~~~a~~~~~~~~~~g~~~ 289 (662)
.|-...|..+....... -.++.|...|-+.... |++.-...-.. + ...-+--|++++|+++|-+|.+.+
T Consensus 689 nPHprLWrllAe~Al~K-l~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFK-LALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHH-HhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 56666787777766665 7777777777665432 22211000000 0 011122488889998887776654
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 038801 290 QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS 369 (662)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (662)
..|..+.+.|++-...+++. +-... ..-.--...|+.+...+.....+++|.+.|..-..
T Consensus 765 ------LAielr~klgDwfrV~qL~r-~g~~d--~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------- 824 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIR-NGGSD--DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------- 824 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHH-ccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence 35666777788777766532 11110 00011235677777778888888888887765321
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
....+.++.+...+++-+.+...+ +-+....-.+..++.+.|.-++|.+.|-+-.. | ..-+..|.
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv 889 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCV 889 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHH
Confidence 113555665555555544443332 33444555566666666666666665543321 1 12234455
Q ss_pred cCCCHHHHHHHHH
Q 038801 450 TSQDFQSAFSLFR 462 (662)
Q Consensus 450 ~~g~~~~A~~~~~ 462 (662)
..++|.+|.++-+
T Consensus 890 ~LnQW~~avelaq 902 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.78 Score=48.11 Aligned_cols=342 Identities=11% Similarity=-0.015 Sum_probs=170.3
Q ss_pred CCCCChHHHH-----HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCC---cHHHHHHHHHHHHHhh
Q 038801 137 PKLLDFQTVH-----TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNS---NFVAFLKVFEECCRIA 208 (662)
Q Consensus 137 ~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 208 (662)
|++.+..-|. .++.-+...+.+..|+++-..+...-.. .+. .+.-...-+.+.. +.+.+..+-+++.
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~-Vl~~Wa~~kI~~~d~~d~~vld~I~~kls--- 501 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDR-VLLEWARRKIKQSDKMDEEVLDKIDEKLS--- 501 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccH-HHHHHHHHHHhccCccchHHHHHHHHHhc---
Confidence 4555555443 3566677788888888887777431111 111 1222222222221 2222233333321
Q ss_pred hhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcC----CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038801 209 LDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLG----VRPNESSFGFLAYLYALKGLQEKIVELESLMNE 284 (662)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 284 (662)
.......+|..+-+..... |+++.|..+++.=...+ +-.+..-+...+.-+...|+.+....++-.+..
T Consensus 502 ------~~~~~~iSy~~iA~~Ay~~-GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 502 ------AKLTPGISYAAIARRAYQE-GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred ------ccCCCceeHHHHHHHHHhc-CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1123445666666655565 88888888776422221 011223344455555666666666655555443
Q ss_pred cCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHhC-C
Q 038801 285 FGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIE--AQKLE-P 361 (662)
Q Consensus 285 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~--m~~~~-~ 361 (662)
. .+...+... ..+.-.|..+|.+.++..+ ..+ + ..+-+.++-.++..-|.. ..... -
T Consensus 575 ~---~~~s~l~~~------l~~~p~a~~lY~~~~r~~~-------~~~---l-~d~y~q~dn~~~~a~~~~q~~~~~~~~ 634 (829)
T KOG2280|consen 575 K---LNRSSLFMT------LRNQPLALSLYRQFMRHQD-------RAT---L-YDFYNQDDNHQALASFHLQASYAAETI 634 (829)
T ss_pred H---HHHHHHHHH------HHhchhhhHHHHHHHHhhc-------hhh---h-hhhhhcccchhhhhhhhhhhhhhhhhh
Confidence 2 111111111 1233445555656555431 111 1 111122222222222211 00000 0
Q ss_pred CCcccccchHHHHHHHHHhcCChHHH----------HHHHHHHHH-CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038801 362 SGIVVDRSVGFGIISACVNLGLSDKA----------HSILDEMNA-CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDIS 430 (662)
Q Consensus 362 ~~~~~~~~~~~~ll~~~~~~~~~~~a----------~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 430 (662)
.+..|+ .....+.|.+.....-. .++.+.+.. .|..-.--+.+--+.-+...|+..+|.++-.+.+
T Consensus 635 ~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk 711 (829)
T KOG2280|consen 635 EGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK 711 (829)
T ss_pred cccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC
Confidence 122222 22334444444332111 112222222 1222223344555666777788888888877776
Q ss_pred hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh
Q 038801 431 SSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH 510 (662)
Q Consensus 431 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 510 (662)
-||-..|-.-+.+++..+++++-+++-+.+. + +.-|.....+|.+.|+.++|.+++.+...
T Consensus 712 ----ipdKr~~wLk~~aLa~~~kweeLekfAkskk----s--PIGy~PFVe~c~~~~n~~EA~KYiprv~~--------- 772 (829)
T KOG2280|consen 712 ----IPDKRLWWLKLTALADIKKWEELEKFAKSKK----S--PIGYLPFVEACLKQGNKDEAKKYIPRVGG--------- 772 (829)
T ss_pred ----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC----C--CCCchhHHHHHHhcccHHHHhhhhhccCC---------
Confidence 5788888888888888888887666544432 1 24677788888888888888888766532
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLR 533 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~ 533 (662)
+.-.+.+|.+.|++.+|.++--
T Consensus 773 -l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 773 -LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred -hHHHHHHHHHhccHHHHHHHHH
Confidence 1246677788888877776543
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.84 E-value=0.0049 Score=44.43 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccC-chHHHHHHHHHHHhCC
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGG-FFDAVMQVVEKSQEMK 616 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~ 616 (662)
+...|..+...+...|++++|+..|++.. .+.|+ ...|..+..++.+.| ++++|++.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai---------~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI---------ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH---------HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45688899999999999999999999999 33454 478888999999999 7999999999987654
No 198
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.81 E-value=0.11 Score=50.86 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCc--cchhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVEDPRVE--VKTHDWNSIIHAFCK---AGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN 552 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 552 (662)
.++-+|....+++..+++.+.+..-.... -...+--...-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33334555555555555555544421110 011111222333444 6666666666666444444556666666655
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCch----HHHHHHH----HHHHhC
Q 038801 553 GYVT---------AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFF----DAVMQVV----EKSQEM 615 (662)
Q Consensus 553 ~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----~~A~~~~----~~m~~~ 615 (662)
.|-. ....++|+..|.+.- .+.||...---+...+.-.|.. .+..++. ....+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---------e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---------EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---------cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 5543 123455666665554 2234332111111112222221 1222222 111223
Q ss_pred CCC---CCHH--hHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 616 KVF---VDKW--KYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 616 ~~~---p~~~--~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
|.. .+-| .+++.++...||.+.+.++++++.++.|.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 322 3333 23366666677777777777777776544
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.79 E-value=0.0076 Score=42.78 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=49.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 550 LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 550 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
+...+...|++++|++.|+++. +. .| +...+..+..++.+.|++++|..+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l-------~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL-------KQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH-------CC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-------HH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4567888999999999999999 33 36 458888999999999999999999999976554
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.76 E-value=0.01 Score=55.61 Aligned_cols=105 Identities=10% Similarity=-0.081 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC----CC
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF----VD 620 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~ 620 (662)
..|...+..+.+.|++++|+..|+.+....+ +....| ..+..+..++...|++++|...|+.+.+.-+. |+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP---~s~~a~--~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYP---DSTYQP--NANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCcchH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 4676666666677999999999999995444 222223 45667888999999999999999999765443 66
Q ss_pred HHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 038801 621 KWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 621 ~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
.+..+...+...|+.+.|...++++++..|....
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6666666667889999999999999998776544
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.73 E-value=0.0053 Score=44.10 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=25.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
.|++++|.++|+.+.... +.+..++..+..+|.+.|++++|..+++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555555555554442 234444445555555555555555555555544
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.70 E-value=0.038 Score=47.07 Aligned_cols=118 Identities=18% Similarity=0.139 Sum_probs=62.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 038801 340 FLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRT 419 (662)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 419 (662)
....++.+.+.+.++++..+....+-++...+. -+......++.+. ..+...++..+...|++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~----------W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEE----------WVEPERERLRELY-------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTST----------THHHHHHHHHHHH-------HHHHHHHHHHHHHTT-H
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccH----------HHHHHHHHHHHHH-------HHHHHHHHHHHHhccCH
Confidence 345667777777777776655444444422200 0111111122111 12445566667777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH-----HcCCCCCccc
Q 038801 420 AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR-----EARIYDLKGS 475 (662)
Q Consensus 420 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 475 (662)
++|..+.+.+.... +.|...|..+|.+|...|+..+|.++|+++. +.|+.|+..+
T Consensus 79 ~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 79 EEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 77777777777652 2266777777888888888888777777664 2467776544
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.69 E-value=0.37 Score=43.63 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAF 592 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 592 (662)
..++.-|=......+|...+..+.+. .-..- -.+.+-|.+.|.+..|..-++.+.+.++ +..-.......+
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-----~t~~~~~al~~l 184 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGKYKAAIIRFQYVIENYP-----DTPAAEEALARL 184 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-HHHHHHHHHHHHHHST-----TSHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcccHHHHHHHHHHHHHHCC-----CCchHHHHHHHH
Confidence 33333343444455555554444431 01111 2245667788888888888888885443 222223456677
Q ss_pred HHHHHccCchHHHH
Q 038801 593 LYALVKGGFFDAVM 606 (662)
Q Consensus 593 ~~~~~~~g~~~~A~ 606 (662)
+.++.+.|..+.|.
T Consensus 185 ~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 185 AEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHTT-HHHHH
T ss_pred HHHHHHhCChHHHH
Confidence 77888888877443
No 204
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.69 E-value=0.031 Score=45.55 Aligned_cols=109 Identities=8% Similarity=0.018 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc--------cCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIST--------DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
|..++..+|.++++.|+.+....+++..-..-.. .......|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4456777788888888887777777655422111 11445678999999999999999999999999999754
Q ss_pred -CCC--CCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 615 -MKV--FVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 615 -~~~--~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
-++ ....|..++..+...-+.....++......-++.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~~~~~~~~~~~~~~~~~~ 120 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSSKREDRAARYFLKCWNYM 120 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcCCcccccHHHHhhhhHhH
Confidence 343 3569999999998887766555554444444433
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.48 Score=43.00 Aligned_cols=141 Identities=13% Similarity=0.035 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHH----
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM---- 480 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll---- 480 (662)
+.+.++.++.-.|.+.-....+.+..+.....+......|+..-.+.|+.+.|...|++..+..-..+..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4455666666666777777777777766545566677777777777777777777777666543334444444443
Q ss_pred -HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038801 481 -TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS 549 (662)
Q Consensus 481 -~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 549 (662)
..+.-.+++..|...++++....+..| ..-|.-.-+..-.|+...|.+..+.|+.. .|...+-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~--~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNA--VANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCch--hhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 234455666777777777665433322 22233233333458888999999998874 555544443
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.64 E-value=0.092 Score=42.36 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=29.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVG--LGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455566666666666555554332 223334445555555555555555555443
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.62 E-value=0.036 Score=52.05 Aligned_cols=102 Identities=10% Similarity=0.015 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
..|...+..+.+.|++++|...|+.+++. .|+. ..+-.+...|...|++++|...|+.+...++ +... .
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~--~ 216 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPK--A 216 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcc--h
Confidence 34666665556678999999999998875 5554 4667788888889999999999999984333 1111 2
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
...+..+...+...|+.++|.++++++.+.-+.
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 234445566777889999999999988765544
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.61 E-value=0.058 Score=51.83 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFL-----QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 574 (662)
+.-+|...|.-..++++|+..+.+-+.- ...-....+.+|..+|...|..++|+.+.+.-.+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444555555555666666655443321 011123466677777777777777777776665443
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.54 E-value=0.014 Score=43.25 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
.+|+.+...|...|++++|+..|++..+..+..+. -.|+ ..++..+..++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57889999999999999999999999976442211 2344 47889999999999999999999998753
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.16 Score=47.24 Aligned_cols=108 Identities=14% Similarity=0.066 Sum_probs=67.2
Q ss_pred HHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhc---CChHHHHHHH
Q 038801 315 LLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNL---GLSDKAHSIL 391 (662)
Q Consensus 315 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~ 391 (662)
+..+...+. |...|-.|...|.+.|+.+.|..-|.+..++.++ |...+..+..++... ..-.++..+|
T Consensus 146 e~~L~~nP~-----d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~----n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 146 ETHLQQNPG-----DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD----NPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHhCCC-----CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 444555433 7778888888888888888888888887654332 222333333333322 2345566777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 392 DEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 392 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
++++..+ +.|+.....|...+...|++.+|...|+.|.+.
T Consensus 217 ~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 217 RQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 7776654 445566666666667777777777777777665
No 211
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.50 E-value=0.0064 Score=43.65 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=51.5
Q ss_pred HhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHH
Q 038801 153 RNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALE 228 (662)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 228 (662)
...|++++|+.+|+.+... .|.+......+...|.+.|++++|.++++++.. ..|+...|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~---------~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK---------QDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG---------GGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------HCcCHHHHHHHHh
Confidence 4678999999999999885 466777777899999999999999999999876 5677666665543
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.48 E-value=0.92 Score=44.55 Aligned_cols=165 Identities=14% Similarity=0.081 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038801 372 FGIISACVNLGLSDKAHSILDEMNACG---CSVGLGVYVPTLKAYCK---EHRTAEATQLVMDISSSGLQLDVGNYDALI 445 (662)
Q Consensus 372 ~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 445 (662)
..++-+|-...+++...++.+.+.... +.-...+-.....++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345555666777777777777766541 11122222334445555 677777777777755554555666666665
Q ss_pred HHHHc---------CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCH----HHHHHHH---HHHh-hCCC--Cc
Q 038801 446 EASIT---------SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRP----ELMAAFL---DEVV-EDPR--VE 506 (662)
Q Consensus 446 ~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----~~a~~~~---~~~~-~~~~--~~ 506 (662)
..|-. ....++|...|.+.-+.. ++..+-..+...+.-.|.. .+..++- ..+. ++.. -.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 54421 123556666666555443 3322211222222222221 1111111 1111 1111 12
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 507 VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
.+--.+..++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 23334566777777778888888888877764
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.43 E-value=0.31 Score=44.12 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=27.4
Q ss_pred HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 038801 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPS 362 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 362 (662)
+...|++++|.+.|.+.....+.... .....-.++.++-+.|++++|...+++..+..|.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~--a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPY--APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 34455566666555555544322111 2233344555555566666666666555544333
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.28 E-value=0.038 Score=45.06 Aligned_cols=98 Identities=13% Similarity=0.032 Sum_probs=57.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
|..++..+|.++++.|+.+....+++..-.-++...... +. .....+..|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~-----------~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE-----------GD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc-----------Cc----------cCCCCCCCCCHHHHHHHH
Confidence 345666777777777777777666655432221110000 00 122236677777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFL-QFEPNDQTYLSLINGYV 555 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~ 555 (662)
.+|+..|++..|+++.+...+. ++.-+..+|..|+.-+.
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777777766653 45555667777766444
No 215
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.23 E-value=1.4 Score=43.40 Aligned_cols=151 Identities=8% Similarity=0.041 Sum_probs=114.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 038801 474 GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTY-LSLIN 552 (662)
Q Consensus 474 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~ 552 (662)
..|-..+....+..-++.|..+|-+..+..-+.+++.+++++|.-++ .|+..-|..+|+--... .||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 45666777777888889999999999887447788999999999887 57888999999976654 6777554 44566
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHh
Q 038801 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENH 632 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~ 632 (662)
.+...++-+.|..+|+....++.. . --..+|..++.--..-|++..|..+=+.|.+.-++-+...-..+.+...
T Consensus 475 fLi~inde~naraLFetsv~r~~~---~---q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEK---T---QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHH---h---hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 667789999999999977743331 1 1147899999998999999999998888877666555444445555444
Q ss_pred h
Q 038801 633 K 633 (662)
Q Consensus 633 ~ 633 (662)
.
T Consensus 549 ~ 549 (660)
T COG5107 549 A 549 (660)
T ss_pred c
Confidence 3
No 216
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.17 E-value=0.18 Score=52.09 Aligned_cols=107 Identities=12% Similarity=-0.002 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc
Q 038801 523 GRLEDAKRTLRRMIFLQFEPNDQTYLSL-INGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF 601 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 601 (662)
.+.+.|.++++.+.+. .|+...|... .+.+...|+.++|++.|++....-. .=-+.....+.-+...+.-.++
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~----~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS----EWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh----hHHhHHHHHHHHHHHHHHHHch
Confidence 4566677777777654 5666544332 2333445777777777775551000 0001223445555666667777
Q ss_pred hHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHh-hhh
Q 038801 602 FDAVMQVVEKSQEM-KVFVDKWKYKQAFMENH-KKL 635 (662)
Q Consensus 602 ~~~A~~~~~~m~~~-~~~p~~~~~~~~~~~~~-~~~ 635 (662)
+++|.+.+..+.+. .+.+..+.|..+.|... ++.
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 77777777776543 44455666666666443 444
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.13 E-value=2.1 Score=44.59 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=14.1
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 038801 83 NTDEAWKSFKSLTANSLFPSKPVTNSLIAHLS 114 (662)
Q Consensus 83 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 114 (662)
..++|.++.+. .|.+..|..+...-.
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al 703 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYAL 703 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHH
Confidence 34455554443 267777776665443
No 218
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.83 Score=41.09 Aligned_cols=214 Identities=12% Similarity=0.176 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
..|.....+|-...++++|...+.+..+ +..-|...|.+ ...++.|..+.++|.+.. --...|+--.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~----~yEnnrslfhA-------AKayEqaamLake~~kls--Evvdl~eKAs 98 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK----GYENNRSLFHA-------AKAYEQAAMLAKELSKLS--EVVDLYEKAS 98 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH----HHHhcccHHHH-------HHHHHHHHHHHHHHHHhH--HHHHHHHHHH
Confidence 3455556667777777777776666542 22223222221 123344555555554421 1223455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 490 (662)
..|..+|..+.|-..+++.-+. ..+.++++|+++|++...- ....++..
T Consensus 99 ~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralav---------------ve~~dr~~ 147 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAV---------------VEEDDRDQ 147 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHH---------------HhccchHH
Confidence 6666677666666655554321 2233455555555543321 11111111
Q ss_pred HHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 038801 491 LMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF----LQFEPND-QTYLSLINGYVTAEQYFSVLM 565 (662)
Q Consensus 491 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~~~~~~a~~ 565 (662)
.|.+ .|...-..+.+..++++|-..|.+-.. ..-.++. ..|...|-.+....++..|.+
T Consensus 148 ma~e----------------l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aek 211 (308)
T KOG1585|consen 148 MAFE----------------LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEK 211 (308)
T ss_pred HHHH----------------HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2211 233333344455555554444332221 1112233 345555566666677777777
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHH
Q 038801 566 MWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVV 609 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
.+++-... + ...-.-+..+...|+.+| ..|+.+++..++
T Consensus 212 c~r~~~qi-p---~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 212 CYRDCSQI-P---AFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhcchhcC-c---cccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 77654310 0 111122345666666665 456666665554
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.28 Score=45.75 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=60.0
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCC-CHH
Q 038801 470 YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA---GRLEDAKRTLRRMIFLQFEP-NDQ 545 (662)
Q Consensus 470 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p-~~~ 545 (662)
|.|...|-.|...|...|+.+.|..-|.+..+-.|-+|+ .+..+..++... ....++.++|+++... .| |+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~--~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE--ILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 455555555555555555555555555555554343333 445555544432 2456777888888864 44 445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+...|...+...|++.+|...|+.|.
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 66666677777888888888888888
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.04 E-value=1.6 Score=42.27 Aligned_cols=250 Identities=14% Similarity=0.063 Sum_probs=139.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCcccccch--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 038801 342 QNGNVKGLANLIIEAQKLEPSGIVVDRSV--GFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRT 419 (662)
Q Consensus 342 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 419 (662)
-.|+++.|.+-|+.|.. .|.... ...|.-..-+.|+.+.|.++-+..-... +--.....+.+...|..|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 132 LEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred hcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 35666666666666543 111111 1122233345666666666666655442 22335666777777777777
Q ss_pred HHHHHHHHHHHhCC-CCCChh--hHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHhcCCHHHH
Q 038801 420 AEATQLVMDISSSG-LQLDVG--NYDALIEASIT---SQDFQSAFSLFRDMREARIYDLKG-SYLTIMTGLMENHRPELM 492 (662)
Q Consensus 420 ~~A~~~~~~m~~~g-~~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a 492 (662)
+.|+++.+.-+... +.+++. .-..|+.+-.. .-+...|...-.+..+ +.|+.. .-..-..++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 77777776654332 223321 12223322111 1234444444433333 234432 233334677888888888
Q ss_pred HHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL-QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
-.+++.+-+. .|...++ .+..+.+.|+. ++.=+++..+. .++||. .+.-.+..+-...|++..|..--+..
T Consensus 283 ~~ilE~aWK~---ePHP~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 283 SKILETAWKA---EPHPDIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhHHHHHHhc---CCChHHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 8888887664 3333333 23334555553 44434333321 245655 56667777778889988888776666
Q ss_pred HHhhcccCCCCCcccHHHHHHHHHHHHc-cCchHHHHHHHHHHHhCC
Q 038801 571 KRKISTDGQKGIKFEHNLVDAFLYALVK-GGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~ 616 (662)
. ...|....|..|.+.-.- .|+-.++..++-+.....
T Consensus 356 ~---------r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 356 A---------REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred h---------hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 6 567888888887776554 499999999988876543
No 221
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=2.9 Score=44.70 Aligned_cols=185 Identities=15% Similarity=0.050 Sum_probs=115.5
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
........-+..+.+...++.|+.+-+.-.... -..........+.+.+.|++++|...|-+... -..|.
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--------~le~s 401 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--------FLEPS 401 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--------cCChH
Confidence 344455667788888888888887765432110 01112233344555678999999887776543 24444
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 220 IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
.+|.-|... .....-...++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+.
T Consensus 402 -----~Vi~kfLda-q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~ 471 (933)
T KOG2114|consen 402 -----EVIKKFLDA-QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALE 471 (933)
T ss_pred -----HHHHHhcCH-HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHH
Confidence 355666776 7788888889999999865 55566778999999999998877776544 2311 111344666
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEA 356 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 356 (662)
.+-+.+-.++|..+ ...... ....... .+-..+++++|++.+..+
T Consensus 472 Ilr~snyl~~a~~L-A~k~~~--------he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 472 ILRKSNYLDEAELL-ATKFKK--------HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHhChHHHHHHH-HHHhcc--------CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 67777777777665 222221 2222222 234567888888888654
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.90 E-value=1.4 Score=40.40 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 549 SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 549 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.+.+-|.+.|.+-.|..-+++|.+..+. ..-....+-.+..+|.+.|-.++|...-+-+....+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~-----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPD-----TSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 3456677889999999999999943221 111224556677788899999998887766654433
No 223
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.88 E-value=0.042 Score=40.00 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=43.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 552 NGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..|.+.+++++|+++++.+. ...| +...+.....++.+.|++++|.+.++...+.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l---------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERAL---------ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHH---------HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 46777888888888888888 3344 3466677777888888888888888888776664
No 224
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.82 E-value=1.5 Score=41.96 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038801 370 VGFGIISACVNLGLSD---KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIE 446 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 446 (662)
++..++.++...+..+ +|..+++.+... +.-...++-.-++.+.+.++.+.+.+.+.+|...- ......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 3344556665555433 344455555332 12223455455666666777777777777777652 112333444443
Q ss_pred HH---HcCCCHHHHHHHHHHHHHcCC
Q 038801 447 AS---ITSQDFQSAFSLFRDMREARI 469 (662)
Q Consensus 447 ~~---~~~g~~~~A~~~~~~m~~~~~ 469 (662)
.+ .. .....|...+..+....+
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~ 188 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRF 188 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHh
Confidence 33 22 223445555555554433
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.80 E-value=2.2 Score=42.17 Aligned_cols=443 Identities=9% Similarity=0.026 Sum_probs=230.0
Q ss_pred HHhcCCchhHHHHHHHHHhcCCCC----CcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHH
Q 038801 152 MRNANTAAPAFALVKCMFKNRYFM----PFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAAL 227 (662)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 227 (662)
+-+.+++.+|..+|.++.+..-.. ..+.+.+.++.+|. ..+.+.....+....+. .|..+-...|-.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~------~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ------FGKSAYLPLFKALV 88 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh------cCCchHHHHHHHHH
Confidence 347778888888888887643211 11344566777775 56666666666665442 12122222222222
Q ss_pred HHHhccCCChhHHHHHHHHHHhc--CCCC------------CcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCC
Q 038801 228 EGCCYGLQSVSDAEKVIETMSVL--GVRP------------NESSFGFLAYLYALKGLQEKIVELESLMNEFG----FSS 289 (662)
Q Consensus 228 ~~~~~~~~~~~~a~~~~~~m~~~--g~~p------------~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~ 289 (662)
+.+. +.+.+|++.+....+. +-.| |-.-=+..++++...|++.+++.+++.+...= ..-
T Consensus 89 --~Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 89 --AYKQ-KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred --HHHh-hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 2344 8888888888777654 3222 11122345677778899999988888876553 336
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 038801 290 QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS 369 (662)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (662)
+..+|+.++-++++.- |.+..+... ..+-| .|..+|-.|.+.=..-++.. | ..+.|...
T Consensus 166 ~~d~yd~~vlmlsrSY--------fLEl~e~~s-~dl~p---dyYemilfY~kki~~~d~~~-Y--------~k~~peee 224 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRSY--------FLELKESMS-SDLYP---DYYEMILFYLKKIHAFDQRP-Y--------EKFIPEEE 224 (549)
T ss_pred cHHHHHHHHHHHhHHH--------HHHHHHhcc-cccCh---HHHHHHHHHHHHHHHHhhch-H--------HhhCcHHH
Confidence 7888888777776542 223322211 12222 24444444443211111100 0 12334444
Q ss_pred hHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----ChhhHH
Q 038801 370 VGFGIISACVNLG--LSDKAHSILDEMNACGCSVGLG-VYVPTLKAYCKEHRTAEATQLVMDISSSGLQL----DVGNYD 442 (662)
Q Consensus 370 ~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~ 442 (662)
.+..++....-.. ...--.++++.-.+.-+.|+-. +...|+..+.+ +.+++..+.+.+....+.+ =+.++.
T Consensus 225 L~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~ 302 (549)
T PF07079_consen 225 LFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFG 302 (549)
T ss_pred HHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444443333221 2222334444444444555532 33334444444 5666666665554432211 245788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCccc-------HHHHHHHHHh-cC---CHHHHHHHHHHHhhCCCCccchhh
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARIYDLKGS-------YLTIMTGLME-NH---RPELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~ll~~~~~-~~---~~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
.++...++.++..+|.+.+.-+.-.. |.... -..+-+..+. .. +...=..+++.+... .+.. ...
T Consensus 303 ~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~-DiDr-qQL 378 (549)
T PF07079_consen 303 NLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY-DIDR-QQL 378 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-cccH-HHH
Confidence 88888999999999998887665443 21111 1112222221 11 122223334433321 2211 111
Q ss_pred HHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCC-CHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHhhcccCC
Q 038801 512 WNSII---HAFCKAGR-LEDAKRTLRRMIFLQFEP-NDQTYLSLI----NGYVT---AEQYFSVLMMWHEIKRKISTDGQ 579 (662)
Q Consensus 512 ~~~li---~~~~~~g~-~~~A~~~~~~m~~~~~~p-~~~~~~~li----~~~~~---~~~~~~a~~~~~~m~~~~~~~~~ 579 (662)
-.-|+ .-+-+.|. -++|+++++...+. .| |..+-|.+. .+|.. ...+..-+.+-+-+. +
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~-------e 449 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT-------E 449 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------h
Confidence 22233 23344555 88999999999873 44 433333332 23332 133334444433334 6
Q ss_pred CCCccc----HHHHHHHHHH--HHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHH-HHhhhhhhhHHH
Q 038801 580 KGIKFE----HNLVDAFLYA--LVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFM-ENHKKLKVAKLR 641 (662)
Q Consensus 580 ~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~-~~~~~~~~a~~~ 641 (662)
.|+.|- ..+-|.|.+| +...|++.++.-+-.-+.+-.|.|..++. ++.| ...+++++|-..
T Consensus 450 ~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RL-lGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 450 VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRL-LGLCLMENKRYQEAWEY 517 (549)
T ss_pred cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHH-HHHHHHHHhhHHHHHHH
Confidence 677763 3566666665 56899999999887777766665555444 5555 445777766543
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.70 E-value=0.046 Score=39.77 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=23.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
.|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444443211 333344444444444444444444444443
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.69 E-value=0.034 Score=41.16 Aligned_cols=63 Identities=17% Similarity=0.325 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFL--QFE---PN-DQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46778888888888888888888877753 111 22 24777888888888888888888888763
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=1.6 Score=39.73 Aligned_cols=142 Identities=8% Similarity=0.003 Sum_probs=102.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN-- 552 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-- 552 (662)
..+.++..+...+.+.-....++++++. ...-+......|+..-.+.||.+.|...|++..+..-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4566777777888888888999998885 3344556778888888899999999999998887544566666665543
Q ss_pred ---HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHH
Q 038801 553 ---GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYK 625 (662)
Q Consensus 553 ---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 625 (662)
.|.-++++.+|...+.++. ..+-+ |....|.-.-++.-.|+...|++.++.|.+..+.|..-..+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~-------~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEIL-------RMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhcc-------ccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhH
Confidence 3445788999998888887 43321 33333433334556799999999999999888877655544
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.60 E-value=1.9 Score=39.80 Aligned_cols=223 Identities=16% Similarity=0.097 Sum_probs=128.6
Q ss_pred CChHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcCCCHHHHHH
Q 038801 382 GLSDKAHSILDEMNACGCS-VGLGVYVPTLKAYCKEHRTAEATQLVMDISSS-GLQLDVGNYDALIEASITSQDFQSAFS 459 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (662)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555554322 13466666777777777777777777776642 123345556666666777777777777
Q ss_pred HHHHHHHcCCCCCcccHHHHHH-HHHhcCCHHHHHHHHHHHhhCCCC--ccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 460 LFRDMREARIYDLKGSYLTIMT-GLMENHRPELMAAFLDEVVEDPRV--EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 460 ~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
.+.........+ ......... .+...|+.+.+...+.+.... .. ......+......+...++.+.+...+.+..
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 777777654332 122222333 567777777777777776442 21 1222333344444556677777777777777
Q ss_pred hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 537 FLQFEPN--DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 537 ~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.. .++ ...+..+...+...++++.|...+.... ...|+ ...+..+...+...|..+++...+++..
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKAL---------ELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHH---------hhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 333 4566666666666677777777777776 22232 2333334444445556777777776665
Q ss_pred hCCC
Q 038801 614 EMKV 617 (662)
Q Consensus 614 ~~~~ 617 (662)
+...
T Consensus 264 ~~~~ 267 (291)
T COG0457 264 ELDP 267 (291)
T ss_pred HhCc
Confidence 4443
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.56 E-value=0.73 Score=37.04 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
.....-+......|+-+.-.+++.++.+.+ .+++...--+..+|.+.|+..++-+++.++. +.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC-------ekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC-------EKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH-------HTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH-------HhchH
Confidence 345667778888999999999999987643 7888888899999999999999999999998 67764
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.19 Score=46.21 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQL--DVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
.|+.-+. +.+.|++..|...|....+....- ....+--|.+++...|++++|..+|..+.+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3444333 334445555555555555542110 112233355555555555555555555544
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=0.39 Score=49.70 Aligned_cols=95 Identities=12% Similarity=-0.052 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcc------cHHHHHHHHhhc---CCcHHHHHHHHHHHHHhhhhhhcC
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFE------LWGGFLVDICRK---NSNFVAFLKVFEECCRIALDENLD 214 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 214 (662)
.+..++...+-.|+-+.+++.+.+..+.+...... .++..+...+.- ..+.+.|.++++.+.+
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~-------- 261 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK-------- 261 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--------
Confidence 45567777777788888887777765533222111 112222222222 3344555555555543
Q ss_pred CCCccHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 038801 215 FMKPNIYACNAALEGCCYGLQSVSDAEKVIETM 247 (662)
Q Consensus 215 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m 247 (662)
..|+...|...-.-+....|++++|++.|++.
T Consensus 262 -~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 262 -RYPNSALFLFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred -hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 34555444444433333335555555555543
No 233
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=1.1 Score=40.15 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=12.9
Q ss_pred HhcCCHHHHHHHHHHHH
Q 038801 555 VTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 555 ~~~~~~~~a~~~~~~m~ 571 (662)
+..+++.+|+.+|+++.
T Consensus 165 a~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34577888888888877
No 234
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.36 E-value=3.2 Score=41.02 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSG-LQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 482 (662)
.+|...|+.-.+..-++.|..+|.+..+.| +.+++..++++|..++. |+..-|..+|+--... .+.+..-....+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 567777887788888999999999999998 66789999999998776 7778888988765544 23333444567778
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 483 LMENHRPELMAAFLDEVVEDPRVEVK--THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 483 ~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
+...++-+.|..+|+..+++ +..+ ..+|..+|.--..-|+...+..+-++|.+. .|...+-.....-|.-
T Consensus 476 Li~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 476 LIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 88899999999999965542 2222 357999999889999999999999998873 6666555555555543
No 235
>PRK15331 chaperone protein SicA; Provisional
Probab=95.35 E-value=0.68 Score=39.24 Aligned_cols=88 Identities=11% Similarity=-0.064 Sum_probs=55.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
-+...|++++|..+|..+...+ .-+..-+..|..++-..+++++|...|......+. -|...+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3445677777777777766654 23444556666666667777777777766555432 244445556667777777777
Q ss_pred HHHHHHHHHH
Q 038801 457 AFSLFRDMRE 466 (662)
Q Consensus 457 A~~~~~~m~~ 466 (662)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777776665
No 236
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.23 E-value=2.4 Score=38.77 Aligned_cols=355 Identities=9% Similarity=0.050 Sum_probs=184.2
Q ss_pred cCCCCcHHhHHHHHHH-HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 038801 285 FGFSSQMVFYSSLISG-YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSG 363 (662)
Q Consensus 285 ~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 363 (662)
.+-+||+..-|..-.. -.+..+.++|+.-|.+.++-.+..| .-.-...-.+|....+.|++++.++.|.+|.......
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKg-eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKG-EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3456666554433222 1344577888888888877643322 1123455677888888899998888888887532222
Q ss_pred ccc--ccchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 038801 364 IVV--DRSVGFGIISACVNLGLSDKAHSILDEMNAC-GCSVGL----GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL 436 (662)
Q Consensus 364 ~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 436 (662)
+.. +....++++.-...+.+.+.-.++|+.-++. .-..+. .|-.-|...|...|.+.+..+++.++.+....-
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 222 2334455666666666666666655543321 001111 233556677777788888888888877653222
Q ss_pred C-----------hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHH-----HhcCCHHHHHHHHHHH
Q 038801 437 D-----------VGNYDALIEASITSQDFQSAFSLFRDMREARI-YDLKGSYLTIMTGL-----MENHRPELMAAFLDEV 499 (662)
Q Consensus 437 ~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~ 499 (662)
| ...|..-|+.|....+-.+-..+|++...-.- .|.+ ....+|+.| .+.|++++|..-|-+.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 1 23567777778777777777778887664321 2322 233334433 4567777776555444
Q ss_pred hhCCCC--ccch---hhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 500 VEDPRV--EVKT---HDWNSIIHAFCKAG----RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 500 ~~~~~~--~p~~---~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
.+.+.- .|.. .-|-.|..++.+.| +..+| .--.-.|.+...+.|+.+|.. ++..+-..++..-
T Consensus 258 FKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA-------KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 258 FKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA-------KPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSN 329 (440)
T ss_pred HhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc-------CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhh
Confidence 443221 1211 12334444444433 11111 111113445677888888765 5555555555443
Q ss_pred HHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHH---------HHhCCCCCCHHhHHHHHHHHhhhhhhhHHH
Q 038801 571 KRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEK---------SQEMKVFVDKWKYKQAFMENHKKLKVAKLR 641 (662)
Q Consensus 571 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~---------m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~ 641 (662)
+ ..+--|+.+-+.+-. +.+.=+..--+++++- ..+.++.+.....++.-|.....++.-..-
T Consensus 330 ~--------~~IM~DpFIReh~Ed-Ll~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide 400 (440)
T KOG1464|consen 330 R--------SNIMDDPFIREHIED-LLRNIRTQVLLKLIKPYTNIGIPFISKELNVPEADVESLLVSCILDDTIDGRIDE 400 (440)
T ss_pred h--------ccccccHHHHHHHHH-HHHHHHHHHHHHHhccccccCchhhHhhcCCCHHHHHHHHHHHHhccccccchHH
Confidence 3 344445443333221 2222222211121111 123455566777777777765544443333
Q ss_pred HHHHHhhH--------HHHHHHhhh
Q 038801 642 KRNFKKME--------ALIAFKNWA 658 (662)
Q Consensus 642 ~~~~~~l~--------p~~~~~~~~ 658 (662)
..++++++ ..+|+.+|.
T Consensus 401 ~n~~l~~~~~~~s~~k~~~al~kW~ 425 (440)
T KOG1464|consen 401 VNQYLELDKSKNSGSKLYKALDKWN 425 (440)
T ss_pred hhhHhccCccCCcchHHHHHHHHHH
Confidence 34444432 245666664
No 237
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.22 E-value=0.3 Score=44.68 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=66.2
Q ss_pred cchhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 038801 507 VKTHDWNSIIHAFCK-----AGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTA----------------EQYFSVLM 565 (662)
Q Consensus 507 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------------~~~~~a~~ 565 (662)
-|-.+|-.++..+.. .+.++=....++.|.+.|+.-|..+|+.|+..+-+. .+-+=+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344556666666643 345666666778888888888888888888776541 23344899
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc
Q 038801 566 MWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF 601 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 601 (662)
++++|. ..|+.||..+-..|++++.+.|-
T Consensus 145 vLeqME-------~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQME-------WHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHH-------HcCCCCchHHHHHHHHHhccccc
Confidence 999999 89999999999999999988776
No 238
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.21 E-value=0.16 Score=46.40 Aligned_cols=103 Identities=11% Similarity=0.134 Sum_probs=63.6
Q ss_pred ChhhHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhh
Q 038801 437 DVGNYDALIEASIT-----SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHD 511 (662)
Q Consensus 437 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 511 (662)
|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+.. ..|. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk-----------------fiP~-nv 127 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK-----------------FIPQ-NV 127 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc-----------------cccH-HH
Confidence 44445444444432 2445555666677777777777777777766655422 2221 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQ 559 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 559 (662)
+....--|-++ -+-+.+++++|..+|+.||..+-..|+++|.+.+.
T Consensus 128 fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 33333333332 34578899999999999999999999999977654
No 239
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.17 E-value=0.77 Score=38.59 Aligned_cols=126 Identities=10% Similarity=0.106 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
...++..+.+.+.......+++.+..... .+...++.++..|++.+ .++.++.++. ..+......+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 34555566666666777777777666522 34556777777777653 3334444442 123334444677777
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHcc-CchHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKG-GFFDAVMQVVEKSQEMKVFVDKWKYKQAFME 630 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~ 630 (662)
+.+.++++.-++.++. . +...+..+... ++.+.|.+++++. -.|+.|..++.++.
T Consensus 81 ~~~l~~~~~~l~~k~~-------~---------~~~Al~~~l~~~~d~~~a~~~~~~~----~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDG-------N---------FKDAIVTLIEHLGNYEKAIEYFVKQ----NNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhc-------C---------HHHHHHHHHHcccCHHHHHHHHHhC----CCHHHHHHHHHHHH
Confidence 7777777777776555 1 11222223333 7777777777652 24556666665553
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.12 E-value=1.2 Score=45.54 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=101.0
Q ss_pred CChhHHHHHHHH-HHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHH
Q 038801 235 QSVSDAEKVIET-MSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRT 313 (662)
Q Consensus 235 ~~~~~a~~~~~~-m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 313 (662)
++++++.++.+. -.-..++ ..-.+.+++-+-+.|..+.|.++-.+ . ..-.+...+.|+++.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp T-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHH
Confidence 899998777752 1111122 33477788888899999999887532 2 1234566789999999876
Q ss_pred HHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHH
Q 038801 314 ILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDE 393 (662)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 393 (662)
- + ...+...|..|.....+.|+++-|.+.|.+... +..|+-.|...|+.+.-.++.+.
T Consensus 341 a----~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 341 A----K------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD------------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp C----C------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred H----H------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------ccccHHHHHHhCCHHHHHHHHHH
Confidence 2 1 223788999999999999999999999988543 66777788888998888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038801 394 MNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMD 428 (662)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (662)
...+| -++....++.-.|+.++..+++.+
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77776 255666666777888877777654
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=95.11 E-value=1.4 Score=44.03 Aligned_cols=55 Identities=5% Similarity=-0.101 Sum_probs=24.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+..+....|+++.|..+|++... +.||. .+|......+.-.|+.++|.+.+++..
T Consensus 344 ~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 344 MGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33333344445555555555444 24443 233333333344455555555555443
No 242
>PRK15331 chaperone protein SicA; Provisional
Probab=94.98 E-value=1.1 Score=37.92 Aligned_cols=89 Identities=11% Similarity=0.016 Sum_probs=59.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE 490 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 490 (662)
.-+...|++++|..+|.-+...+.. +..-|..|..++-..+++++|...|......+ ..|...+......+...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 3455678888888888887765322 55556667777777788888888887766654 344444555556666666666
Q ss_pred HHHHHHHHHhh
Q 038801 491 LMAAFLDEVVE 501 (662)
Q Consensus 491 ~a~~~~~~~~~ 501 (662)
.|...|.....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66666666555
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.86 E-value=0.71 Score=47.09 Aligned_cols=98 Identities=13% Similarity=0.027 Sum_probs=42.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHH
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSA 457 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 457 (662)
..+.|+++.|.++.++ ..+...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3444555555444221 12444555555555555555555555554332 33444444555555444
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 038801 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFL 496 (662)
Q Consensus 458 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 496 (662)
.++.+.....| -++..+.++.-.|+.++..+++
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444443 2333344444444444444333
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=3.7 Score=38.92 Aligned_cols=152 Identities=14% Similarity=0.022 Sum_probs=90.5
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH----HHHHHH
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG----IISACV 379 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~----ll~~~~ 379 (662)
.|+..+|...+.+.++..+. |...++-.=.+|..+|+.+.-...++++.- .-.+|...|.. ..-++.
T Consensus 116 ~g~~h~a~~~wdklL~d~Pt-----Dlla~kfsh~a~fy~G~~~~~k~ai~kIip----~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPT-----DLLAVKFSHDAHFYNGNQIGKKNAIEKIIP----KWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred cccccHHHHHHHHHHHhCch-----hhhhhhhhhhHHHhccchhhhhhHHHHhcc----ccCCCCcHHHHHHHHHHhhHH
Confidence 45555555556777776543 666666666777777777777777766542 22344433332 222334
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHcCCCHHH
Q 038801 380 NLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS---GLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 380 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
..|-+++|++.-++..+.+ +.|...-.++..++-..|+..++.++..+-... +--.-..-|-...-.+...+.++.
T Consensus 187 E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 6677888888777777665 556666677777777788888887776554321 000011112222334556688888
Q ss_pred HHHHHHHHH
Q 038801 457 AFSLFRDMR 465 (662)
Q Consensus 457 A~~~~~~m~ 465 (662)
|+++|+.-+
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 888887533
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=94.81 E-value=0.51 Score=47.08 Aligned_cols=121 Identities=10% Similarity=0.062 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHH
Q 038801 524 RLEDAKRTLRRMIF-LQFEPND-QTYLSLINGYVT---------AEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDA 591 (662)
Q Consensus 524 ~~~~A~~~~~~m~~-~~~~p~~-~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ 591 (662)
..+.|+.+|.+... ..+.|+. ..|..+..++.. ..+..+|.++.+... .+.| |......
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---------eld~~Da~a~~~ 343 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---------DITTVDGKILAI 343 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---------hcCCCCHHHHHH
Confidence 45678888888882 2246665 345444443332 234556667666666 2333 5677777
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
+..+..-.|+++.|...|++....++. ++.|.+....+...|+.+.|.+..++.++++|...
T Consensus 344 ~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 344 MGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 777778888899999999999888776 56777766677778999999999999999999764
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.77 E-value=0.62 Score=37.30 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=54.4
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHH
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACV 379 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~ 379 (662)
+++..|+.+.|++.|-+.+.-.+. ....||.-..++.-.|+.++|++-+++..++....-+.-...|..-...|-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 455667777777777666654322 566777777777777777777777777655432221111112222233445
Q ss_pred hcCChHHHHHHHHHHHHCC
Q 038801 380 NLGLSDKAHSILDEMNACG 398 (662)
Q Consensus 380 ~~~~~~~a~~~~~~m~~~~ 398 (662)
..|+-+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 5667777777776666655
No 247
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.74 E-value=4.2 Score=39.08 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHHcCC--
Q 038801 347 KGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL----SDKAHSILDEMNACGCSVGL--GVYVPTLKAYCKEHR-- 418 (662)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~-- 418 (662)
.+|.++|+.|++-++---.++..++..++.. ...+ .+.++.+|+.+.+.|+..+- +..+.++........
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 3466666666664333334455555555433 2222 23345555555555543321 222222222211111
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHH
Q 038801 419 TAEATQLVMDISSSGLQLDVGNYDAL 444 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~~~~~~l 444 (662)
...+.++++.+.+.|+++....|..+
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHH
Confidence 23455555555555555555444433
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.69 E-value=2.2 Score=35.75 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=21.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE 416 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (662)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34455544555555555555555444 23444555555555543
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.60 E-value=0.51 Score=43.50 Aligned_cols=96 Identities=14% Similarity=0.202 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
.|+.-+..| +.|++..|.+.|...++. .|+. ..+--|..++...|++++|..+|..+.+.++ -.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P------~s~KA 214 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP------KSPKA 214 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC------CCCCC
Confidence 577777655 567899999999998886 4543 3666788888889999999999988885333 2222
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
+..+--|..+..+.|+.++|..+|+++.+.
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 255666777888899999999999888654
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.53 E-value=4.6 Score=38.67 Aligned_cols=167 Identities=13% Similarity=0.178 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHcCCCHH---HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHH
Q 038801 439 GNYDALIEASITSQDFQ---SAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515 (662)
Q Consensus 439 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 515 (662)
.++..++.+|...+..+ +|..+++.+... .+.....+..-+..+.+.++.+.+.+.+.+|+...+. ....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~--~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH--SESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc--ccchHHHH
Confidence 35666777777766544 455555555433 2333456666677777788888888888888875331 12234444
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHH-HH---HHHHhcCC------HHHHHHHHHHHHHhhcccCCCC
Q 038801 516 IHAF---CKAGRLEDAKRTLRRMIFLQFEPNDQ-TYLS-LI---NGYVTAEQ------YFSVLMMWHEIKRKISTDGQKG 581 (662)
Q Consensus 516 i~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~-li---~~~~~~~~------~~~a~~~~~~m~~~~~~~~~~~ 581 (662)
+..+ ... ....|...+..+....+.|... .... ++ ......++ .+...++++.+.+.. ...
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~----~~~ 236 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSL----GKQ 236 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHh----cCC
Confidence 4444 332 3456667776666655555543 1111 11 11112111 444444455333211 222
Q ss_pred CcccH-HHHHHHHH----HHHccCchHHHHHHHHHHH
Q 038801 582 IKFEH-NLVDAFLY----ALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 582 ~~p~~-~~~~~l~~----~~~~~g~~~~A~~~~~~m~ 613 (662)
+.+.. ....+|++ .+.+.+++++|.++++-..
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222 33334433 4668999999999998643
No 251
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.49 E-value=0.6 Score=46.54 Aligned_cols=70 Identities=4% Similarity=-0.009 Sum_probs=54.0
Q ss_pred cccccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCCh--hhHHHHHHHHhccCCchhHHHHHHHHH
Q 038801 61 QTLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSK--PVTNSLIAHLSSLQDNHNLKRAFASVV 130 (662)
Q Consensus 61 ~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~ 130 (662)
....+.+...++.+..+|...|++++|+..|+...+..+.... ..|..+-.+|...|+.+++...++..+
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455667888899999999999999999999998876533211 357888888888888777777776654
No 252
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.42 E-value=1.4 Score=38.29 Aligned_cols=136 Identities=9% Similarity=-0.020 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH--
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYL--SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-- 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-- 586 (662)
.|..++...- .+.. +.....+.+....-.-....+. .+...+...|++++|..-++... +..-|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l---------~~t~De~l 124 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL---------AQTKDENL 124 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---------ccchhHHH
Confidence 3444444432 3333 4444555555431111111222 23445666777777777777666 222222
Q ss_pred --HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHHhh
Q 038801 587 --NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFKNW 657 (662)
Q Consensus 587 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~~~~ 657 (662)
.+--.|.+.....|.+++|...++.....++.+-........+...|+-++|+..+++.++.++..+-+.|
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~~~ 197 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAAREI 197 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHHHH
Confidence 22233455667777788888777777666655544444456666677777788777777777655554444
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.35 E-value=1.5 Score=35.23 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=66.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc--ccHHHHHHHHH
Q 038801 518 AFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK--FEHNLVDAFLY 594 (662)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--p~~~~~~~l~~ 594 (662)
+.+..|+.+.|++.|.+.+.. -| ....||.-..++.-.|+.++|++=+++..+. .|-+ --...|..-..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL------ag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALEL------AGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHh------cCccchHHHHHHHHHHH
Confidence 467789999999999988864 44 5578998889998899999999888888732 1211 11133333344
Q ss_pred HHHccCchHHHHHHHHHHHhCCC
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.|-..|+.+.|..=|+..-+.|-
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCC
Confidence 56678888888888888777664
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=3.9 Score=36.99 Aligned_cols=211 Identities=11% Similarity=-0.001 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHH
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYAC 223 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (662)
.|.....+|...+++++|..-+.+..+.. + .+..+ +.-...++.|.-+.+++.. +.--+..|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-E-nnrsl-------fhAAKayEqaamLake~~k---------lsEvvdl~ 94 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-E-NNRSL-------FHAAKAYEQAAMLAKELSK---------LSEVVDLY 94 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-H-hcccH-------HHHHHHHHHHHHHHHHHHH---------hHHHHHHH
Confidence 34445556666777777776555554311 1 11111 1123445555555666543 22234456
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhc---C--CCCcHHhHHHHH
Q 038801 224 NAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEF---G--FSSQMVFYSSLI 298 (662)
Q Consensus 224 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~---g--~~~~~~~~~~li 298 (662)
+-....|.+. |.++.|-..+++.-+. ...-++++|+++|...... + ...-...|..+-
T Consensus 95 eKAs~lY~E~-GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 95 EKASELYVEC-GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHh-CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 6666667776 7777766666554221 1122334444444433221 0 011122344444
Q ss_pred HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH
Q 038801 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSK-ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~ 377 (662)
..+.+..++++|-..|.+...-......-++. ..|-..|-.+.-..++..|...++.--.+....-.-+..+...|+.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 55566666666655432221110000000111 12334444555566777777777664332111112233444455555
Q ss_pred HHhcCChHHHHHH
Q 038801 378 CVNLGLSDKAHSI 390 (662)
Q Consensus 378 ~~~~~~~~~a~~~ 390 (662)
| ..|+.+++.++
T Consensus 238 y-d~gD~E~~~kv 249 (308)
T KOG1585|consen 238 Y-DEGDIEEIKKV 249 (308)
T ss_pred h-ccCCHHHHHHH
Confidence 4 33555555444
No 255
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.22 E-value=7 Score=39.48 Aligned_cols=183 Identities=9% Similarity=0.042 Sum_probs=110.8
Q ss_pred ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038801 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDAL 444 (662)
Q Consensus 365 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 444 (662)
..|.....+++..+.......-++.+..+|...| -+...|..++.+|..+ .-+.-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4456666677777777777777777777777765 4556677777777777 455666677777665433 44444444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCc-----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHH
Q 038801 445 IEASITSQDFQSAFSLFRDMREARIYDLK-----GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAF 519 (662)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 519 (662)
..-|-+ ++.+.+...|.++...-++-.. ..|.-|... -..+.+....+..++.++.|...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 6777777777776655332111 112211111 13345666666666666656555555666666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
....++++|++++..+.++. ..|...-.-++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 77888888888888777754 345555555554443
No 256
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.32 Score=47.19 Aligned_cols=100 Identities=8% Similarity=-0.015 Sum_probs=69.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc---------cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCH
Q 038801 552 NGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF---------EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDK 621 (662)
Q Consensus 552 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~ 621 (662)
+.|.+.|++..|..-|+++...+.- ..+..+ -..++.-|..++.+.+++.+|++..++..+.+.. +-.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~--~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEY--RRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhc--cccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 3455556666666666655543331 111111 1235566777889999999999999999887765 334
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 622 WKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 622 ~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
...-..++...++++.|+..++++++++|.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 44557777888999999999999999999863
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.03 E-value=4.8 Score=36.95 Aligned_cols=167 Identities=11% Similarity=0.102 Sum_probs=87.9
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCC--CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC
Q 038801 447 ASITSQDFQSAFSLFRDMREARI--YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR 524 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 524 (662)
.-.+.|++++|...|+.+..... +-...+...++.++.+.+++++|...+++....++-.||+ -|-..|.+++.--.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcc
Confidence 34456777777777777765421 2233445555556666666666666666666665555554 24444444442110
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhhcccCCCCCcccHHH------------H
Q 038801 525 LEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFS---VLMMWHEIKRKISTDGQKGIKFEHNL------------V 589 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~p~~~~------------~ 589 (662)
++.. ..|... |..-|++++..++ .....||... =
T Consensus 122 i~~~----------------------------~rDq~~~~~A~~~f~~~i~ryP---nS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 122 IDDV----------------------------TRDQSAARAAFAAFKELVQRYP---NSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred CCcc----------------------------ccCHHHHHHHHHHHHHHHHHCC---CCcchhhHHHHHHHHHHHHHHHH
Confidence 0000 111111 2222222222222 2222333211 1
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhCCCC----CCHHhHHHHHHHHhhhhhhhHHHHHHH
Q 038801 590 DAFLYALVKGGFFDAVMQVVEKSQEMKVF----VDKWKYKQAFMENHKKLKVAKLRKRNF 645 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~~~~~~~~~~~~a~~~~~~~ 645 (662)
..+.+-|.+.|.+..|..-++.|.+.=.. .+....+..++...|-.++|.+..+-+
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 23556788999999999999999876322 235555566677777777777655433
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.98 E-value=9.7 Score=42.79 Aligned_cols=135 Identities=11% Similarity=0.060 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 038801 294 YSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET----YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS 369 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (662)
|.-.++.--+.|.+++|+.++ .|+... |.+....+...+.+++|.-.|+..-+
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly------------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------- 967 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALY------------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------- 967 (1265)
T ss_pred cHHHHHHHHhcccchhhhhee------------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------
Confidence 333444444555666665543 224433 33344444556666666666655422
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLG--VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA 447 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 447 (662)
..-.+.+|...|+|.+|..+..++... -+.. +-..|+.-+...++.-+|-++..+.... ..-.+..
T Consensus 968 -lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~l 1035 (1265)
T KOG1920|consen 968 -LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVAL 1035 (1265)
T ss_pred -HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHH
Confidence 123566667777777777776665321 1211 1144555666666666666666655432 2223344
Q ss_pred HHcCCCHHHHHHHHHH
Q 038801 448 SITSQDFQSAFSLFRD 463 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~ 463 (662)
||+...+++|..+-..
T Consensus 1036 l~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1036 LCKAKEWEEALRVASK 1051 (1265)
T ss_pred HhhHhHHHHHHHHHHh
Confidence 5555566666655443
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=2.8 Score=39.18 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=9.1
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEM 394 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m 394 (662)
+..++...|+++.|..++..+
T Consensus 174 la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhC
Confidence 344444444444444444433
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.88 E-value=0.71 Score=40.50 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH- 586 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~- 586 (662)
..+..+..-|++.|+.++|.+.|.++.+....+.. ..+-.+|......+++..+....+++....+. |-.++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~----~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK----GGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc----cchHHHH
Confidence 46888999999999999999999999987666655 46778888888899999999999988855442 222222
Q ss_pred ---HHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 587 ---NLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 587 ---~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
..|..| ++...|++.+|-+.|-+.
T Consensus 113 nrlk~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 113 NRLKVYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHH--HHHHhchHHHHHHHHHcc
Confidence 222222 345688999998888665
No 261
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.84 E-value=0.8 Score=45.69 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND------QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...|+.+..+|.+.|++++|+..|++.+ ..+. .+|..+..+|...|+.++|++.+++..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rAL----eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETAL----ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666666666666666666554 5322 125556666666666666666666665
No 262
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.65 E-value=7.1 Score=37.56 Aligned_cols=156 Identities=8% Similarity=0.037 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc--CC----CHHHHHHHHHHHHHcCC---CCCcccHHHHHHHHHhcCC-
Q 038801 419 TAEATQLVMDISSSGLQLDVGNYDALIEASIT--SQ----DFQSAFSLFRDMREARI---YDLKGSYLTIMTGLMENHR- 488 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~- 488 (662)
+++...+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|++.-. .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556677888888877776665543322222 22 35567788888887642 3334455555443 2222
Q ss_pred ---HHHHHHHHHHHhhCCCCccc--hhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038801 489 ---PELMAAFLDEVVEDPRVEVK--THDWNSIIHAFCKAGR--LEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYF 561 (662)
Q Consensus 489 ---~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 561 (662)
.+.++.+++.+.+. |...+ ......++........ ..++.++++.+.+.|+++....|..+.-...-.+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~ 234 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEE 234 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchH
Confidence 35667777777763 44332 2333333332222111 4578899999999999988877776654444444443
Q ss_pred HHHHHHHHHHHhhccc
Q 038801 562 SVLMMWHEIKRKISTD 577 (662)
Q Consensus 562 ~a~~~~~~m~~~~~~~ 577 (662)
+...-+.++.+.+...
T Consensus 235 ~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 235 KIVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 5555556665555543
No 263
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=1.3 Score=43.12 Aligned_cols=138 Identities=7% Similarity=-0.003 Sum_probs=86.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC
Q 038801 445 IEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR 524 (662)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 524 (662)
...|.+.|++..|..-|++.+..=- +...-+.++.... .. .-..++..+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~~-~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKKA-EA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHHH-HH--------HHHHHhhHHHHHHHhhhh
Confidence 4678888888888888887664310 0000011111111 11 112356677778888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHH-HHHHHHHHccCchH
Q 038801 525 LEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV-DAFLYALVKGGFFD 603 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~ 603 (662)
+.+|++.-.+.+..+ .+|+...--=..+|...|+++.|...|+++. .+.|+.... +.|+..-.+..+..
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~---------k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKAL---------KLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHH---------HhCCCcHHHHHHHHHHHHHHHHHH
Confidence 888888888888764 4566666666788888899999999998888 566766433 44444444444433
Q ss_pred H-HHHHHHHHHh
Q 038801 604 A-VMQVVEKSQE 614 (662)
Q Consensus 604 ~-A~~~~~~m~~ 614 (662)
+ ..++|..|..
T Consensus 343 ~kekk~y~~mF~ 354 (397)
T KOG0543|consen 343 EKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhh
Confidence 3 4677777743
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=3.1 Score=35.38 Aligned_cols=138 Identities=14% Similarity=-0.030 Sum_probs=83.1
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
-....|...++ +...+..++|+.-|.++.+.|...-......-...+....|+...|...|+++... ...|-
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-------t~~P~ 128 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-------TSIPQ 128 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-------CCCcc
Confidence 34456655554 56778899999999999998765544444444556667788999999999988651 22232
Q ss_pred HH-HHHHHHH--HHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038801 220 IY-ACNAALE--GCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG 286 (662)
Q Consensus 220 ~~-~~~~ll~--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g 286 (662)
.. -...|=. .+..+ |.++......+-+-..|-+.-...-..|--+.-+.|++.+|.+.|..+....
T Consensus 129 ~~rd~ARlraa~lLvD~-gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 129 IGRDLARLRAAYLLVDN-GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred hhhHHHHHHHHHHHhcc-ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 22 0111111 23444 7777777776666544322222222334344456778888887777766543
No 265
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.52 E-value=2.5 Score=35.04 Aligned_cols=58 Identities=9% Similarity=0.176 Sum_probs=29.6
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+.|++++|.+.|+.+..+++- . .-....--.|+.++.+.|++++|...+++..+..+.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~---g--~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPF---G--EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCC---C--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 346666666666666543321 0 111233344555666666666666666666555554
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.48 E-value=3.9 Score=39.28 Aligned_cols=169 Identities=12% Similarity=0.036 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK---THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-----NDQTY 547 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~ 547 (662)
|..+..++-+..+..+++.+-+.-..-.|..|. ....-+|..++.-.+.++++++-|+....--..- ....+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 334444444444444555554444433344331 1234456677777788899999888777532111 12478
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-----HHHHHHHHHHHccCchHHHHHHHHHHH----hCCCC
Q 038801 548 LSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-----NLVDAFLYALVKGGFFDAVMQVVEKSQ----EMKVF 618 (662)
Q Consensus 548 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~ 618 (662)
..|...|....|+++|+-+..+..+... ..++.-=. -....+..++-..|++-.|.+..++.. +.|-.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~---s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVN---SYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHH---hcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 8888889999999999888877764433 22221111 233445557778888888888887764 34544
Q ss_pred CCHHhHH---HHHHHHhhhhhhhHHHHHHHHh
Q 038801 619 VDKWKYK---QAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 619 p~~~~~~---~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
+.--..+ ...++..||.|.+-..++++..
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 4333333 4455666788887666665544
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.42 E-value=0.94 Score=42.49 Aligned_cols=83 Identities=18% Similarity=0.350 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV 589 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 589 (662)
.++..++..+...|+.+.+...++++.... .-|...|..+|.+|.+.|+...|+..|+++.....+ +.|+.|...+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~e--dlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAE--ELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh--hcCCCccHHHH
Confidence 367888899999999999999999999753 336689999999999999999999999999865443 67899988777
Q ss_pred HHHHHH
Q 038801 590 DAFLYA 595 (662)
Q Consensus 590 ~~l~~~ 595 (662)
..+..+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 766555
No 268
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.41 E-value=4.6 Score=34.69 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCC
Q 038801 242 KVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGG 321 (662)
Q Consensus 242 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 321 (662)
+..+.+.+.|+.|+...|..+|..+.+.|.+....+ +...++-+|.......+-.+. +....+.++=.+|+++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence 344455667788888888888888888887664443 335555555444443332222 23344555555666552
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038801 322 NMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397 (662)
Q Consensus 322 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 397 (662)
...+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..+|+...++
T Consensus 89 --------~~~~~~iievLL~~g~vl~ALr~ar~~~~-------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 --------GTAYEEIIEVLLSKGQVLEALRYARQYHK-------VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --------hhhHHHHHHHHHhCCCHHHHHHHHHHcCC-------cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12456677778888888888888766421 12223345666666666666555555555443
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.32 E-value=3.6 Score=33.24 Aligned_cols=134 Identities=10% Similarity=0.103 Sum_probs=61.4
Q ss_pred cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchH---HHHHHHHHh
Q 038801 304 LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG---FGIISACVN 380 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~---~~ll~~~~~ 380 (662)
.|.+++..+++.+...+. +..-||-+|.-....-+-+-..+.++..-+. .|...+ -.++.++..
T Consensus 15 dG~V~qGveii~k~v~Ss-------ni~E~NWvICNiiDaa~C~yvv~~LdsIGki------FDis~C~NlKrVi~C~~~ 81 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS-------NIKEYNWVICNIIDAADCDYVVETLDSIGKI------FDISKCGNLKRVIECYAK 81 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS--------HHHHTHHHHHHHHH--HHHHHHHHHHHGGG------S-GGG-S-THHHHHHHHH
T ss_pred hchHHHHHHHHHHHcCcC-------CccccceeeeecchhhchhHHHHHHHHHhhh------cCchhhcchHHHHHHHHH
Confidence 455555556555555543 4445555555555555555555555554321 111111 123333333
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSL 460 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (662)
.|... ......+..+.+.|+-|.-.+++.++.+. -+++....-.+..+|.+.|+..++.++
T Consensus 82 ~n~~s------------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 82 RNKLS------------------EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp TT---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hcchH------------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 33221 22333445555666666666666666542 245556666666666666666666666
Q ss_pred HHHHHHcCC
Q 038801 461 FRDMREARI 469 (662)
Q Consensus 461 ~~~m~~~~~ 469 (662)
+++..++|+
T Consensus 143 l~~ACekG~ 151 (161)
T PF09205_consen 143 LKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHhch
Confidence 666666664
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.30 E-value=10 Score=38.41 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=30.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+..+.-+.|+.++|.+.+++|.+..-.-| ......|+.++...+.+.++..++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 44444556666666666666654311111 1345556666666666666666665543
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=2.6 Score=39.87 Aligned_cols=154 Identities=10% Similarity=-0.068 Sum_probs=101.2
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhc-C--CCCcHHhHHHHHHHHHhcCChhhHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEF-G--FSSQMVFYSSLISGYVKLGNLESAS 311 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~-g--~~~~~~~~~~li~~~~~~g~~~~A~ 311 (662)
|+..+|-..++++.+. .+.|...++..=.+|.-.|+.+.-...++.+... + ++....+-..+.-++..+|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 8888888888888764 4667777877778899999998888888887654 2 2222333334445567889999998
Q ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHH
Q 038801 312 RTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSIL 391 (662)
Q Consensus 312 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 391 (662)
+.-.+.++-... |.-.-.+....+--+|+..++.++..+-...-..+-..-..-|....-.+...+.++.|.++|
T Consensus 196 k~A~ralqiN~~-----D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 196 KQADRALQINRF-----DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHhhccCCCc-----chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 876666655322 555566777777788999999888765322111111111223444444455567788888887
Q ss_pred HHH
Q 038801 392 DEM 394 (662)
Q Consensus 392 ~~m 394 (662)
+.=
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.09 E-value=1.3 Score=37.47 Aligned_cols=95 Identities=9% Similarity=-0.069 Sum_probs=63.3
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH-HHHHHHHccCchHHHHHHHHHHHhCCCCCCH
Q 038801 546 TYLSLINGY---VTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD-AFLYALVKGGFFDAVMQVVEKSQEMKVFVDK 621 (662)
Q Consensus 546 ~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 621 (662)
+.+.||..+ ...++.+++..+++.++ -++|...... .-...+.+.|++.+|..+|+++.+..+.-..
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALr---------vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALR---------VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHH---------HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 444444433 45689999999999998 4566553222 2234467899999999999998777665445
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHHHHhhH
Q 038801 622 WKYKQAFMENHKKLKVAKLRKRNFKKME 649 (662)
Q Consensus 622 ~~~~~~~~~~~~~~~~a~~~~~~~~~l~ 649 (662)
...++..|-...+-..-+...+.+++-.
T Consensus 80 ~kALlA~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 80 AKALLALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhcC
Confidence 5667777776655555555555555544
No 273
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.04 E-value=0.66 Score=43.26 Aligned_cols=103 Identities=14% Similarity=0.176 Sum_probs=60.5
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccch
Q 038801 433 GLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR---IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKT 509 (662)
Q Consensus 433 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 509 (662)
|......+...++..-....+++.+..++-+++... ..++. +-..+++.|. .-+.++++-++..-+. +|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcch-hccccch
Confidence 444455555666655555677777777777766542 12222 2222333333 3344566666555444 4777777
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
.+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777777766665543
No 274
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.87 E-value=9 Score=38.81 Aligned_cols=60 Identities=8% Similarity=0.001 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
.+...+-+.|+.++|++.+.++.+..+..-+..+...|+.++...+.+.++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344455556666666666666655433333344556667777777777777777766543
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.76 E-value=4.5 Score=33.54 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=35.6
Q ss_pred HHhcCChHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 378 CVNLGLSDKAHSILDEMNACG--CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
..+.|++++|.+.|+.+..+- -+-.....-.++.+|.+.|++++|...+++..+......-+.|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 344556666666666555541 011233444455555566666666666665555533222344444444444
No 276
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.67 E-value=0.22 Score=46.80 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=71.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHH
Q 038801 551 INGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAF 628 (662)
Q Consensus 551 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~ 628 (662)
.+-|.+.|.+++|+..|.... .+.| +.+++..-..+|.+..++..|..=.......+-. ...+..-..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---------a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---------AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---------ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 345788999999999998877 5667 7788888888999999999888777766544321 2234443445
Q ss_pred HHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 629 MENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 629 ~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
-...|++++|++=++..++|||...
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccH
Confidence 5567999999999999999999643
No 277
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=17 Score=38.85 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
+.+--+.-+...|+..+|.++-.+.+ -||-..|..=+.+++..+++++-.++-+.++ ++.-|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------------sPIGy~ 748 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------------SPIGYL 748 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------------CCCCch
Confidence 44445555556666666666666555 4666666666666666666666555443333 133345
Q ss_pred HHHHHHHccCchHHHHHHHHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m 612 (662)
-++.+|.+.|+.+||.+++-++
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhcc
Confidence 5566666666666666666554
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.46 E-value=8.4 Score=35.20 Aligned_cols=199 Identities=15% Similarity=0.074 Sum_probs=112.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNAC-GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIE- 446 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~- 446 (662)
..+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44455566666667777777666666542 223444556666666666677777777777766543222 122222222
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCC--CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC
Q 038801 447 ASITSQDFQSAFSLFRDMREARI--YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR 524 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 524 (662)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.+........ ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHccc
Confidence 56677777777777777644211 0122333333344556667777777777766532111 24456666666777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 525 LEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
++.|...+...... .|+ ...+..+...+...+..+++...+++..
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777653 333 3334444444445556777777666666
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.25 E-value=18 Score=38.60 Aligned_cols=228 Identities=12% Similarity=0.091 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 038801 405 VYVPTLKAYCKEH-----RTAEATQLVMDISSSGLQLDVGNYDALIEASIT-SQDFQSAFSLFRDMREARIYDLKGSYLT 478 (662)
Q Consensus 405 ~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 478 (662)
....+..+|.+.. +.+.|..+|....+.|. |+....-..+.-... ..+...|.++|....+.|..+. +-.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A---~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA---IYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH---HHH
Confidence 3444555555432 45556666666665542 233222111111111 1345667777766666664221 111
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038801 479 IMTGLM----ENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554 (662)
Q Consensus 479 ll~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 554 (662)
+...|. -..+...|..++++..+. + .|....-...+..+.. ++.+.+.-.+..+.+.|.+--...-..++...
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~ 442 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQS 442 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhc
Confidence 111111 122456666777666665 2 2221111122223333 66666666666666554332111111111111
Q ss_pred ---Hh----cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHcc----CchHHHHHHHHHHHhCCCCCCHHh
Q 038801 555 ---VT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKG----GFFDAVMQVVEKSQEMKVFVDKWK 623 (662)
Q Consensus 555 ---~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~ 623 (662)
.. ..+...+...|.... ..| +......|...|... .+++.|...+....+.+ ..-.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~a~-------~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~ 509 (552)
T KOG1550|consen 443 EEDLFSRGVISTLERAFSLYSRAA-------AQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQAL 509 (552)
T ss_pred cccccccccccchhHHHHHHHHHH-------hcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHH
Confidence 11 234555666666655 333 223334444444332 34777888887777666 3445
Q ss_pred HHHHHHHHhhh----hhhhHHHHHHHHhhHHHH
Q 038801 624 YKQAFMENHKK----LKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 624 ~~~~~~~~~~~----~~~a~~~~~~~~~l~p~~ 652 (662)
..++++..+|. +.+|.+.++++.+.+...
T Consensus 510 ~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 510 FNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred hhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 55777777653 455666667666655443
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.21 E-value=0.27 Score=31.38 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHh
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWK 623 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~ 623 (662)
++..+..++.+.|++++|.++++++.+..+. |+.|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 5667788888999999999999988877664 33443
No 281
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.11 E-value=7.4 Score=34.08 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=66.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS-----LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
...+...|++++|..-++.... .|....+.. |.+.....|.+++|+.+++... ..+. ......
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~w--~~~~~e 163 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-------EESW--AAIVAE 163 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------cccH--HHHHHH
Confidence 4567788999999999998875 333333333 4455667899999999998777 3332 334455
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCCC
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVFV 619 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 619 (662)
.-.+++...|+-++|+.-|++..+.+..|
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 56778999999999999999998876443
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.76 E-value=7 Score=33.16 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=43.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHcc
Q 038801 521 KAGRLEDAKRTLRRMIFLQFEPNDQTYL-SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKG 599 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 599 (662)
+.++.+++..++..+.- +.|...... .-...+...|++.+|+.+|+++. .. .|.......|+..|...
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~-------~~--~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELE-------ER--APGFPYAKALLALCLYA 90 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh-------cc--CCCChHHHHHHHHHHHH
Confidence 45566666666666664 245442211 11223355666666666666665 22 23333333444444433
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHhH
Q 038801 600 GFFDAVMQVVEKSQEMKVFVDKWKY 624 (662)
Q Consensus 600 g~~~~A~~~~~~m~~~~~~p~~~~~ 624 (662)
.+-.+=..+-+++.+.+..|+....
T Consensus 91 ~~D~~Wr~~A~evle~~~d~~a~~L 115 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGADPDARAL 115 (160)
T ss_pred cCChHHHHHHHHHHhcCCChHHHHH
Confidence 3323333333444455555544333
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.31 E-value=8.8 Score=33.02 Aligned_cols=134 Identities=7% Similarity=-0.010 Sum_probs=84.0
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcC-CcHHHHHHHHHHHHH
Q 038801 128 SVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKN-SNFVAFLKVFEECCR 206 (662)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 206 (662)
.+.+.+...+.+++...|..++..+.+.|++. .+..++..+..+++......|+..-.+. .-..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 44444557778888889999999999888744 4556666777777777666565543221 12334555555542
Q ss_pred hhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038801 207 IALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEF 285 (662)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 285 (662)
..+..++..+... |++-+|+++.+.... .+......++.+..+.+|...-..+++-..+.
T Consensus 90 --------------~~~~~iievLL~~-g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 --------------TAYEEIIEVLLSK-GQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --------------hhHHHHHHHHHhC-CCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1455666777776 999999988877532 23333455667777777765555555555443
No 284
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.30 E-value=2.4 Score=35.20 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=57.8
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcccH---HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHh
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFEH---NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENH 632 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~ 632 (662)
..++.+++..+++.|+ -+.|+. .++.. ..+.+.|++++|..+++...+.+.....-..++..|-.-
T Consensus 22 ~~~d~~D~e~lLdALr---------vLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---------VLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred hcCCHHHHHHHHHHHH---------HhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 3799999999999999 455554 34433 447799999999999999988876655566667777665
Q ss_pred hhhhhhHHHHHHHHhh
Q 038801 633 KKLKVAKLRKRNFKKM 648 (662)
Q Consensus 633 ~~~~~a~~~~~~~~~l 648 (662)
..-..-+......++-
T Consensus 91 l~Dp~Wr~~A~~~le~ 106 (153)
T TIGR02561 91 KGDAEWHVHADEVLAR 106 (153)
T ss_pred cCChHHHHHHHHHHHh
Confidence 4444444444444443
No 285
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.05 E-value=1.4 Score=38.30 Aligned_cols=91 Identities=11% Similarity=0.049 Sum_probs=46.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHH--hcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHH
Q 038801 518 AFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN---GYV--TAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDA 591 (662)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~---~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~ 591 (662)
-+...|++++|..-|.+.++. +.+...--.+++- +.+ +.+.++.|++-..+.+ .+.|+. .....
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---------el~pty~kAl~R 173 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---------ELNPTYEKALER 173 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---------hcCchhHHHHHH
Confidence 355677777777777777764 2222222222211 111 2355555555444444 233322 22222
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
-..+|.+...+++|++=|+++.+..+.
T Consensus 174 RAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 234566777777777777777666554
No 286
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.74 E-value=23 Score=36.84 Aligned_cols=417 Identities=10% Similarity=-0.069 Sum_probs=212.8
Q ss_pred ChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccH
Q 038801 141 DFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNI 220 (662)
Q Consensus 141 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 220 (662)
+...+..++.---...+.+.+..+++.++.. .|-...++......=.+.|..+.+.++|++... ++.-++
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--------aip~Sv 113 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--------AIPLSV 113 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------hhhhHH
Confidence 3334444444333334444555566666542 355555555555555577788888888888765 466777
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhc-CCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVL-GVRP-NESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
..|...+..+....|+.+...+.|+..... |..- +...|-..|.--...+++.....+++..++.. ...|+..-
T Consensus 114 dlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f 189 (577)
T KOG1258|consen 114 DLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHF 189 (577)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHH
Confidence 777777776666557777777777776543 3221 12234455555556677777777777776642 22233222
Q ss_pred HHHHh---c------CChhhHHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCcccc
Q 038801 299 SGYVK---L------GNLESASRTILLCLGGG-NMEQSDFSKETYCEVVKGFLQ-NGNVKGLANLIIEAQKLEPSGIVVD 367 (662)
Q Consensus 299 ~~~~~---~------g~~~~A~~~~~~~~~~~-~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~ 367 (662)
.-|.+ . ...+++.++ ......+ ......+....+..-+.--.. .+..+++.....+.
T Consensus 190 ~~f~~~l~~~~~~~l~~~d~~~~l-~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~----------- 257 (577)
T KOG1258|consen 190 DRFKQLLNQNEEKILLSIDELIQL-RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI----------- 257 (577)
T ss_pred HHHHHHHhcCChhhhcCHHHHHHH-hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHH-----------
Confidence 22211 1 122222222 1111100 000000111111111111100 00111111111100
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 038801 368 RSVGFGIISACVNLGLSDKAHSILDEMNACG-------CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440 (662)
Q Consensus 368 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 440 (662)
....-.++-..-...+....|+.-+++- ..++..+|..-+.--.+.|+.+.+.-+|+...-- +..=...
T Consensus 258 ---~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~ef 333 (577)
T KOG1258|consen 258 ---VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEF 333 (577)
T ss_pred ---HHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHH
Confidence 0001111111122222333333333321 1335578888888888999999999999887632 1111233
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccch-hhHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKT-HDWNSIIHAF 519 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~ 519 (662)
|-..+.-....|+.+-|..++....+--++-...+-..-....-..|+.+.|..+++.+..+. |+. ..-..-+...
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e 410 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWE 410 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHH
Confidence 444444444458888888887776665443332222222222344679999999999998863 442 2222234455
Q ss_pred HhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHH
Q 038801 520 CKAGRLEDAK---RTLRRMIFLQFEPNDQTYLSLINGYV-----TAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDA 591 (662)
Q Consensus 520 ~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~ 591 (662)
.+.|+.+.+. +++.........+ .+.+.+.--++ -.++.+.|..++.++.. -..++...|..
T Consensus 411 ~r~~~~~~~~~~~~l~s~~~~~~~~~--~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--------~~~~~k~~~~~ 480 (577)
T KOG1258|consen 411 RRKGNLEDANYKNELYSSIYEGKENN--GILEKLYVKFARLRYKIREDADLARIILLEAND--------ILPDCKVLYLE 480 (577)
T ss_pred HHhcchhhhhHHHHHHHHhcccccCc--chhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--------cCCccHHHHHH
Confidence 6788888887 4444444322222 22222222222 25899999999999992 33455678888
Q ss_pred HHHHHHccC
Q 038801 592 FLYALVKGG 600 (662)
Q Consensus 592 l~~~~~~~g 600 (662)
++..+...+
T Consensus 481 ~~~~~~~~~ 489 (577)
T KOG1258|consen 481 LIRFELIQP 489 (577)
T ss_pred HHHHHHhCC
Confidence 888766544
No 287
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.31 E-value=3 Score=39.25 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCChhhHHHHH
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS-----SGLQLDVGNYDALI 445 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~li 445 (662)
+..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3345555555566666666666666553 44556666666666666666666666665543 35555554444333
No 288
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=17 Score=34.32 Aligned_cols=48 Identities=10% Similarity=-0.076 Sum_probs=26.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHH
Q 038801 265 LYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRT 313 (662)
Q Consensus 265 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 313 (662)
.....|+..+|..+|+...... +-+...--.+..+|...|+.+.|..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHH
Confidence 3445566666666666555543 12234444555666666666666655
No 289
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=5.2 Score=37.68 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=65.4
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRV--EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQT 546 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 546 (662)
.+....+...++..-....++++++.++-++...... .|+.. -...++.+ -.=+.++++.++..=+.-|+.||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 3555566666666666677788888887777665322 11111 11222222 22356677777777777788888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 547 YLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
++.+|+.+.+.+++.+|..+.-.|.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8888888888888888777777766
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.71 E-value=0.78 Score=27.63 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRR 534 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~ 534 (662)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 291
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=35 Score=37.14 Aligned_cols=52 Identities=6% Similarity=0.030 Sum_probs=33.8
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHH
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNF 645 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~ 645 (662)
++..+.+..+.+++..+.+...+. .|..|...+.+....+.++.-.+...+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~--~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE--DPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc--ChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 455566777777777777776433 5778888888887777555544444333
No 292
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.14 E-value=37 Score=36.89 Aligned_cols=424 Identities=12% Similarity=0.009 Sum_probs=200.8
Q ss_pred hHHHHHHHHHHH-hcCCchhHHHHHHHHHhcCCCCCcc----cHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCC
Q 038801 142 FQTVHTLLGSMR-NANTAAPAFALVKCMFKNRYFMPFE----LWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFM 216 (662)
Q Consensus 142 ~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 216 (662)
..++..+...+. ...+++.|...+++.......+... ....+++..+.+.+... |.+.+++..+.... .+.
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~---~~~ 134 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET---YGH 134 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc---cCc
Confidence 344555666655 6677888888888765432221111 12345666666555544 88888876653110 111
Q ss_pred CccHHHHHHH-HHHHhccCCChhHHHHHHHHHHhcC---CCCCcccHHHHHHHHH--HcCCHHHHHHHHHHHHhcC----
Q 038801 217 KPNIYACNAA-LEGCCYGLQSVSDAEKVIETMSVLG---VRPNESSFGFLAYLYA--LKGLQEKIVELESLMNEFG---- 286 (662)
Q Consensus 217 ~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~~~~~g---- 286 (662)
.+=...|..+ +..+... +++..|++.++.+...- ..|-...+..++.+.. +.+..+++.+..+.+....
T Consensus 135 ~~w~~~frll~~~l~~~~-~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q 213 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQH-KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ 213 (608)
T ss_pred hhHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc
Confidence 2223344444 3333343 68888888888875432 2334444444554444 3455566666666553321
Q ss_pred -----CCCcHHhHHHHHHHHH--hcCChhhHHHH---HHHHHcCCCCCC----------C--C-----------CCH---
Q 038801 287 -----FSSQMVFYSSLISGYV--KLGNLESASRT---ILLCLGGGNMEQ----------S--D-----------FSK--- 330 (662)
Q Consensus 287 -----~~~~~~~~~~li~~~~--~~g~~~~A~~~---~~~~~~~~~~~~----------~--~-----------p~~--- 330 (662)
..|-..++..+++.++ ..|+++.+... +.+.++...... + . +..
T Consensus 214 ~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~w 293 (608)
T PF10345_consen 214 LDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSW 293 (608)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEee
Confidence 1234556666666544 44554444333 222222211110 0 0 111
Q ss_pred ------HHHHHHHHH--HHhcCCHHHHHHHHHHHHHhCCCCc-----cccc--------chHHHH---------HHHHHh
Q 038801 331 ------ETYCEVVKG--FLQNGNVKGLANLIIEAQKLEPSGI-----VVDR--------SVGFGI---------ISACVN 380 (662)
Q Consensus 331 ------~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~--------~~~~~l---------l~~~~~ 380 (662)
.....++.+ .+..+..++|.+++++..++..+.. .+.. ..+... +-..+-
T Consensus 294 l~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~ 373 (608)
T PF10345_consen 294 LPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFI 373 (608)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 112222333 3345555577666666543221111 1111 111111 122234
Q ss_pred cCChHHHHHHHHHHHHCCC-CCC-----hhhHHHHH--HHHHHcCCHHHHHHHHH--------HHHhCCCCCChhhHHHH
Q 038801 381 LGLSDKAHSILDEMNACGC-SVG-----LGVYVPTL--KAYCKEHRTAEATQLVM--------DISSSGLQLDVGNYDAL 444 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~-~~~-----~~~~~~li--~~~~~~g~~~~A~~~~~--------~m~~~g~~~~~~~~~~l 444 (662)
.+++..+....++|.+... .|+ ...+...+ -.+...|+++.|+..|. .....+...+...+..+
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~L 453 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAAL 453 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHH
Confidence 6889899999998876421 111 12222222 23445799999999997 45555555454444332
Q ss_pred HH--HH--HcCCCHHH--HHHHHHHHHHc-CCCCC--cc-cHHHHHHHHHhcCC--HHHHHHHHHHHhhCC-----CCcc
Q 038801 445 IE--AS--ITSQDFQS--AFSLFRDMREA-RIYDL--KG-SYLTIMTGLMENHR--PELMAAFLDEVVEDP-----RVEV 507 (662)
Q Consensus 445 i~--~~--~~~g~~~~--A~~~~~~m~~~-~~~~~--~~-~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~-----~~~p 507 (662)
=. .+ ......++ +.++++.+... .-.++ .. .+..++.++..... ..++...+.+..+.. ....
T Consensus 454 Nl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l 533 (608)
T PF10345_consen 454 NLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQL 533 (608)
T ss_pred HHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchH
Confidence 11 11 12222233 66666665542 11221 12 23333333322111 224444333322211 1111
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH--HHHHH-----HHHHHHhcCCHHHHHHHHHHHH
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL-QFEPND--QTYLS-----LINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~--~~~~~-----li~~~~~~~~~~~a~~~~~~m~ 571 (662)
-..+++.|...+. .|+.++..+........ .-.||. ..|.. +...+-..|+.++|.....+..
T Consensus 534 ~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 534 LAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1223444444444 68877766665543321 112333 45633 3444666799999998887765
No 293
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.10 E-value=0.35 Score=30.82 Aligned_cols=35 Identities=9% Similarity=-0.063 Sum_probs=30.8
Q ss_pred CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 619 VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 619 p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
|+.+..+...+...|+.+.|++.++++++.+|.+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56777788888999999999999999999999754
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.09 E-value=9.4 Score=33.51 Aligned_cols=80 Identities=11% Similarity=0.046 Sum_probs=61.0
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH--HHHHHHHHHHHccCchHHHHHH
Q 038801 532 LRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH--NLVDAFLYALVKGGFFDAVMQV 608 (662)
Q Consensus 532 ~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
++...++.++-++ ..+..+...|++.|+.++|++.+.+++ +....+.. ..+-.+++...-.|++..+...
T Consensus 23 lk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~-------~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 23 LKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRAR-------DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-------hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3333344344344 478899999999999999999999999 55655554 5677888999999999999999
Q ss_pred HHHHHhCCCC
Q 038801 609 VEKSQEMKVF 618 (662)
Q Consensus 609 ~~~m~~~~~~ 618 (662)
+.+....--.
T Consensus 96 i~ka~~~~~~ 105 (177)
T PF10602_consen 96 IEKAESLIEK 105 (177)
T ss_pred HHHHHHHHhc
Confidence 9887654333
No 295
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.07 E-value=37 Score=36.80 Aligned_cols=63 Identities=16% Similarity=-0.015 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-------HHHHHHHHHHHHhcC
Q 038801 221 YACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL-------QEKIVELESLMNEFG 286 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-------~~~a~~~~~~~~~~g 286 (662)
..| .+|--+.+. |++++|.++..+... +.......+...+..+....+ -++...-|+...+..
T Consensus 113 p~W-a~Iyy~LR~-G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 113 PIW-ALIYYCLRC-GDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EHH-HHHHHHHTT-T-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred ccH-HHHHHHHhc-CCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 345 555667777 999999999966543 345666778888888876532 235555666665554
No 296
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.03 E-value=14 Score=31.73 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=53.4
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh-hHHHHH--HHHHhcC
Q 038801 448 SITSQDFQSAFSLFRDMREARIYDLKG-SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH-DWNSII--HAFCKAG 523 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li--~~~~~~g 523 (662)
+++.+..++|+.-|.++.+.|...-+. ..........+.|+...|...|+++..+..+ |-+. -...|= ..+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 355667777777777777766421110 0011112344455555555555555554222 2111 111111 1223444
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 524 RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.++....-.+-+...+-.--...-..|.-+-.+.|++.+|...|+.+.
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 454444444444332211122233444444444555555555555544
No 297
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.73 E-value=0.98 Score=27.19 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999966
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.38 E-value=26 Score=34.03 Aligned_cols=133 Identities=9% Similarity=-0.008 Sum_probs=77.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC----CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVVED----PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF----LQFEPNDQTYL 548 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~ 548 (662)
.++..++...+.++.+.+.|+...+- ........+|..|...|.+..|+++|.-...+..+ .++.--...|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34455666666677777777665431 11122345678888888888888888766655543 22221112333
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 549 S-----LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 549 ~-----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
. +.-++...|..-+|.+.-++..+..- ..|-++-. .....+.+.|-..|+.+.|+.-++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal---~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLAL---QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHH---HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3 23345556777777777776653222 23433332 45566677777888888888777664
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.20 E-value=41 Score=36.25 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDIS 430 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~ 430 (662)
-..|+..|...+++.+|..++-..+
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhcc
Confidence 3347778888888888888776665
No 300
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.99 E-value=24 Score=33.18 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
+++.....|..+|.+.+|.++-++.+... +.+...|-.|+..+...||--+|.+-++.+.+.+.. ..|+..|..+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vlea--elgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEA--ELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH--HhCCCcchhHHH
Confidence 45666778889999999999999998753 446678889999999999988888888887765554 457766655443
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.94 E-value=47 Score=36.55 Aligned_cols=230 Identities=13% Similarity=0.026 Sum_probs=119.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcH-------HhHHHHHH-HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Q 038801 266 YALKGLQEKIVELESLMNEFGFSSQM-------VFYSSLIS-GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVV 337 (662)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li 337 (662)
.....++++|..++.++...--.|+. ..+++|-. .....|++++|.++-...+..-......+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567777777777776554222221 12222221 12345788888888777776654444555677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHH-----HHHHHhcCCh--HHHHHHHHHHHHC-----CC-CCChh
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGI-----ISACVNLGLS--DKAHSILDEMNAC-----GC-SVGLG 404 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~l-----l~~~~~~~~~--~~a~~~~~~m~~~-----~~-~~~~~ 404 (662)
.+..-.|++++|..+..+..++ .-..+...+... ...+...|.. ++....|...... .. .+-..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~---a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM---ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH---HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 8888899999998888776652 122233333321 1233445632 2222233322211 10 11224
Q ss_pred hHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCccc-HHH--
Q 038801 405 VYVPTLKAYCKE-HRTAEATQLVMDISSSGLQLDVGNY--DALIEASITSQDFQSAFSLFRDMREARIYDLKGS-YLT-- 478 (662)
Q Consensus 405 ~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~-- 478 (662)
++..+..++.+. +...++..-+.--......|-...+ ..|+......|+.++|...+.++......+.... |..
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 455555555551 1122222222222222222222222 3677888889999999999999886544332111 211
Q ss_pred -HH--HHHHhcCCHHHHHHHHHH
Q 038801 479 -IM--TGLMENHRPELMAAFLDE 498 (662)
Q Consensus 479 -ll--~~~~~~~~~~~a~~~~~~ 498 (662)
.+ ......|+...+..++.+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 11 123446777777666655
No 302
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.79 E-value=0.019 Score=48.66 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=38.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQD 453 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 453 (662)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4444555555555555555555444344455555555555555444444444431 111222334444444555
Q ss_pred HHHHHHHHHH
Q 038801 454 FQSAFSLFRD 463 (662)
Q Consensus 454 ~~~A~~~~~~ 463 (662)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 303
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.39 E-value=54 Score=35.70 Aligned_cols=335 Identities=8% Similarity=-0.001 Sum_probs=167.9
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCcHHhHHHH
Q 038801 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG-FSSQMVFYSSL 297 (662)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~l 297 (662)
+...|.....++.+ |++..+.++-..+...-+ ..-..|..+...+. ....++...++ .+.. .+.....-..-
T Consensus 33 ~r~~f~~A~~a~~~--g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl---~~~~~~P~~~~Lr~~~ 105 (644)
T PRK11619 33 QRQRYQQIKQAWDN--RQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFI---RANPTLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHH---HHCCCCchHHHHHHHH
Confidence 34566677776654 788888777777643211 11112222211111 12344333333 3332 22223334444
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA 377 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~ 377 (662)
+..+.+.+++..... |.. . ...+...-.....+....|+.++|......+=. .|..
T Consensus 106 l~~La~~~~w~~~~~-~~~---~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~---~g~~------------ 161 (644)
T PRK11619 106 VNELARREDWRGLLA-FSP---E-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWL---TGKS------------ 161 (644)
T ss_pred HHHHHHccCHHHHHH-hcC---C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCC------------
Confidence 555666667666555 211 1 112445555666677777777666554444311 1111
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHH
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQS 456 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 456 (662)
..+.+..+|+...+.|...+..++.- +......|+...|..+...+. ++ ......++..+.+ ...
T Consensus 162 -----~p~~cd~l~~~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~-----~~~~~~a~a~~al~~~---p~~ 227 (644)
T PRK11619 162 -----LPNACDKLFSVWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLP-----ADYQTIASALIKLQND---PNT 227 (644)
T ss_pred -----CChHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcC-----hhHHHHHHHHHHHHHC---HHH
Confidence 12334444555554443333333333 344455667776666665541 12 2223333333333 222
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCccc--hhhHHHHHHHHHhcCCHHHHHHHH
Q 038801 457 AFSLFRDMREARIYDLKGSYLTIMTGLM--ENHRPELMAAFLDEVVEDPRVEVK--THDWNSIIHAFCKAGRLEDAKRTL 532 (662)
Q Consensus 457 A~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 532 (662)
+..++.. ++++...-..++.++. ...+.+.|...+..+.......+. ..++..+....+..+...+|...+
T Consensus 228 ~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~ 302 (644)
T PRK11619 228 VETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWR 302 (644)
T ss_pred HHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 2222221 1222212222222222 244568899999887665454433 234455544444443356777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 533 RRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 533 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
...... ..|.....--+..-...++++.+...+..|.. .. .-...-.--+.+++...|+.++|..+|+.+
T Consensus 303 ~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~-------~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 303 DDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPM-------EA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred Hhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCH-------hh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 765533 22444455555555688999998888888752 11 112333344677777799999999999997
Q ss_pred H
Q 038801 613 Q 613 (662)
Q Consensus 613 ~ 613 (662)
.
T Consensus 373 a 373 (644)
T PRK11619 373 M 373 (644)
T ss_pred h
Confidence 4
No 304
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.02 E-value=12 Score=39.86 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=39.1
Q ss_pred HHHHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh----------hHHHHHHHHHcCCC
Q 038801 387 AHSILDEMNACGCSVGL---GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVG----------NYDALIEASITSQD 453 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----------~~~~li~~~~~~g~ 453 (662)
-..++++|..+--.|++ .+...++-.|-...+++...++.+.++.. ||.. .|.-.+.---+-|+
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCcc
Confidence 34455666554333332 34444555555666677777777776653 3221 12222222233456
Q ss_pred HHHHHHHHHHHHHc
Q 038801 454 FQSAFSLFRDMREA 467 (662)
Q Consensus 454 ~~~A~~~~~~m~~~ 467 (662)
-++|+...-.|.+.
T Consensus 259 RakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEK 272 (1226)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555543
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.48 E-value=1.9 Score=25.28 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=18.7
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
+|..+..++...|++++|+..++++.+.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45666667777777777777777765543
No 306
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.16 E-value=34 Score=32.20 Aligned_cols=54 Identities=22% Similarity=0.205 Sum_probs=24.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 410 LKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
.+.|..+|.+.+|..+.+...... ..+...|-.+|..+...|+--.|.+-++.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344444555555555544444331 124444444555555555444444444433
No 307
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.64 E-value=55 Score=34.21 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCC-CccHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFM-KPNIYACNA 225 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 225 (662)
.....=.+.|..+.+.++|++-+.. ..-+...+...+...+...|+.+...+.|+...... |. -.+...|..
T Consensus 84 kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~v------G~dF~S~~lWdk 156 (577)
T KOG1258|consen 84 KFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYV------GLDFLSDPLWDK 156 (577)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc------ccchhccHHHHH
Confidence 3333345677788888888887763 223334445555555666778888888888876541 11 234456777
Q ss_pred HHHHHhccCCChhHHHHHHHHHHh
Q 038801 226 ALEGCCYGLQSVSDAEKVIETMSV 249 (662)
Q Consensus 226 ll~~~~~~~~~~~~a~~~~~~m~~ 249 (662)
.|.--..+ +++.....+|+...+
T Consensus 157 yie~en~q-ks~k~v~~iyeRile 179 (577)
T KOG1258|consen 157 YIEFENGQ-KSWKRVANIYERILE 179 (577)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHh
Confidence 77777776 888888888888875
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.09 E-value=47 Score=32.99 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=39.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP---NDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
...+|..+...+.+.|.++.|...+.++...+... +....-.-.+..-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777788877777777777533111 122222334445556777777777777664
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.02 E-value=2.4 Score=24.72 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=18.4
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
.+..+..++.+.|++++|++.+++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666777777777777777765543
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.77 E-value=7.6 Score=29.49 Aligned_cols=63 Identities=5% Similarity=-0.011 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 236 SVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 236 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
+.-++.+-++.+....+.|+.....+.+++|.+.+|+..|.++++-.+... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 334555666666777788888888888899999999999998888776431 124446666554
No 311
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.76 E-value=4.1 Score=23.84 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKL 359 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 359 (662)
.+|..+..++...|++++|++.|++..++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35666666666777777777777666553
No 312
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.33 E-value=11 Score=28.72 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh-CCCCCCHHhHHH
Q 038801 559 QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE-MKVFVDKWKYKQ 626 (662)
Q Consensus 559 ~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ 626 (662)
|.-++.+-++.+. ..++.|++.+..+.++||-|-.++..|+++++-.+. -+....+|.+.+
T Consensus 22 D~we~rr~mN~l~-------~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLF-------GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHh-------ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 4556777777888 788999999999999999999999999999998763 333334555543
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.29 E-value=69 Score=34.30 Aligned_cols=179 Identities=12% Similarity=0.039 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHH--HH-HHHcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHcCC-
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTL--KA-YCKEHRTAEATQLVMDISS-------SGLQLDVGNYDALIEASITSQ- 452 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li--~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 452 (662)
...+.++++...+.|. ......-..+ .+ +....+.+.|..+|..+.+ .| +....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4556677777766652 2222222222 22 3456788888888888766 54 4445666777777643
Q ss_pred ----CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH--hcCCH
Q 038801 453 ----DFQSAFSLFRDMREARIYDLKGSYLTIMTGLME-NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC--KAGRL 525 (662)
Q Consensus 453 ----~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~ 525 (662)
+.+.|..+|.+..+.|.+.. ..+...+..... ..+...|.++|....+. |.. ....+-+++.... ...+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a-~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDA-QYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchH-HHHHHHHHHcCCccccHHHHHHHHHHHHHc-CCh-HHHHHHHHHHHhCCCcCCCH
Confidence 67789999999999885332 222222111111 23568999999998875 432 2222222222111 33478
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 526 EDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 526 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+.|..++++..+.| .|-..--...+..+.. ++++.+...+..+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH
Confidence 99999999999887 4333222233334444 77777776666666
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.14 E-value=10 Score=33.50 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038801 274 KIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGL 349 (662)
Q Consensus 274 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 349 (662)
.|.+.|-.+...+.--+....-+|...|. ..+.+++..++.+.++-... +-.+|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443344444444444333 33445555555554443221 1233444444444444444444443
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.96 E-value=27 Score=29.28 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
.++.+++..+++.+.--.+-.+...++...+ +...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 5566666666666654333344445555555 45677788888888777764
No 316
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.70 E-value=44 Score=31.61 Aligned_cols=142 Identities=8% Similarity=0.031 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHH-cCCCCCcccHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHH
Q 038801 453 DFQSAFSLFRDMRE-ARIYDLKGSYLTIMTGLMENH--RPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAK 529 (662)
Q Consensus 453 ~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (662)
.+.+|+.+|+.... ..+--|..+...++....... ....-.++.+-+....+-.++..+-..++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 234445556666666665522 233344555555555566777788899999999999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHH
Q 038801 530 RTLRRMIFL-QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL 596 (662)
Q Consensus 530 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~ 596 (662)
++++..... +..-|...|..+|+.....|+..-..++.++-. +--....++..+...-..+-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~Gh--LLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGH--LLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCC--eEEeeecCCcCCHHHHHHHHHHH
Confidence 999887765 455577899999999999999776666655321 00000445555555555444443
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.69 E-value=78 Score=34.47 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=117.4
Q ss_pred CccHHHHHHHHHHHhccCCChhHHHHHHHHHH-hcCCCCCcc--cHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCcH-
Q 038801 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMS-VLGVRPNES--SFGFLAYLYA-LKGLQEKIVELESLMNEFGFSSQM- 291 (662)
Q Consensus 217 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~--t~~~li~~~~-~~g~~~~a~~~~~~~~~~g~~~~~- 291 (662)
..+...|..+|..- ++.++-+. +..+.|... ++-.+...+. ...+++.|+..+++.....-.++.
T Consensus 27 ~~~l~~Y~kLI~~a----------i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 27 EEQLKQYYKLIATA----------IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred hhhHHHHHHHHHHH----------HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34556677776644 33444444 333444333 3334455555 567899999998876544322221
Q ss_pred ----HhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHhCCCCccc
Q 038801 292 ----VFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV-VKGFLQNGNVKGLANLIIEAQKLEPSGIVV 366 (662)
Q Consensus 292 ----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 366 (662)
.+...++..+.+.+... |.+.+.+.++.....+..+-...+.-+ +.-+...++...|.+.++.+.........|
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 22345667777777666 888888888765443333333444444 333334479999999999987644333344
Q ss_pred ccchHHHHHHHHH--hcCChHHHHHHHHHHHHCC---------CCCChhhHHHHHHHHH--HcCCHHHHHHHHHHH
Q 038801 367 DRSVGFGIISACV--NLGLSDKAHSILDEMNACG---------CSVGLGVYVPTLKAYC--KEHRTAEATQLVMDI 429 (662)
Q Consensus 367 ~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m 429 (662)
-..++..++.+.. +.+..+++.+..+++.... ..|-..++..+++.++ ..|+++.+...++++
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555554 3455667777776663321 1345667777777665 467766666655544
No 318
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=82.26 E-value=17 Score=29.77 Aligned_cols=58 Identities=9% Similarity=0.099 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHH
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEE 203 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 203 (662)
-|..+-..|++ ..+.+..+|..|...++......++..-...+...|++++|.++|+.
T Consensus 67 RylkiWi~ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 67 RYLKIWIKYAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33334344444 34499999999999999888999999999999999999999999986
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.03 E-value=5.4 Score=23.17 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKL 359 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 359 (662)
.|..+...+...|++++|++.|++..++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666677777777777666543
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.61 E-value=13 Score=37.30 Aligned_cols=128 Identities=9% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYA 595 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~ 595 (662)
|.--...|+.-.|.+-+....... .-++.........+...|+++.+.+.+.... .-+.....+...+++.
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~--------~~~~s~~~~~~~~~r~ 366 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVE--------KIIGTTDSTLRCRLRS 366 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchh--------hhhcCCchHHHHHHHh
Q ss_pred HHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 596 LVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
..+.|++++|...-+.|....+. |.+.+.-.+.....|-.+++---+++++.++|..
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
No 321
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=80.90 E-value=86 Score=33.76 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHHHHh
Q 038801 68 ITSLETNLHKSLLTNNTDEAWKSFKSL 94 (662)
Q Consensus 68 ~~~~~~~l~~~~~~~~~~~A~~~~~~~ 94 (662)
+.-|+ .+..++-+|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56676 788889999999999998443
No 322
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.85 E-value=11 Score=28.91 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
..+-+..+....+.|+..+..+.++++-+.+++..|.++|+-++.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444444455555666666666666666666666666666666544
No 323
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.72 E-value=21 Score=29.79 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc--ccccchHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhhHHHH
Q 038801 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGI--VVDRSVGFGIISACVNLGL-SDKAHSILDEMNACGCSVGLGVYVPT 409 (662)
Q Consensus 333 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l 409 (662)
.|.++.-....++....+.+++.+..+....+ ..+...|.+++.+.+.... ---+..+|..|.+.+.+.+..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555666666655555533222111 1233344444444433333 22334444444444444444444444
Q ss_pred HHHH
Q 038801 410 LKAY 413 (662)
Q Consensus 410 i~~~ 413 (662)
|.++
T Consensus 122 i~~~ 125 (145)
T PF13762_consen 122 IKAA 125 (145)
T ss_pred HHHH
Confidence 4433
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.71 E-value=3.8 Score=25.29 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
++.|...|...|++++|..++++..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 4444444444444444444444443
No 325
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=80.32 E-value=46 Score=30.28 Aligned_cols=142 Identities=13% Similarity=0.088 Sum_probs=83.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038801 480 MTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQ 559 (662)
Q Consensus 480 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 559 (662)
+..|.+.-++..|....+++.+ +++ + .+-+--|.+..+..--.++.+-....++.-+..-...++ +...||
T Consensus 137 MEiyS~ttRFalaCN~s~KIiE--PIQ----S-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIE--PIQ----S-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHcccchhhhhhcchhhhhh--hHH----h-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 3344444455555555555544 221 1 223334556655555555555555566665555555553 456788
Q ss_pred HHHHHHHHHHHHHhhcccCCC-----CCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 038801 560 YFSVLMMWHEIKRKISTDGQK-----GIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD-KWKYKQAFMEN 631 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~~~~~~ 631 (662)
...|+.-++.-..-+...... --.|.+.....++..|. .+++++|.+++.++-+.|+.|. +.+.+...|..
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~ 284 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVVKN 284 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 888888877655322211111 11567767777777664 5789999999999999999974 66666555544
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.19 E-value=17 Score=32.16 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHH
Q 038801 343 NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKA 387 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 387 (662)
..+.+++..++.....+...+-.+|...+.+|.+.+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555555544444455555555555555555555544
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.08 E-value=75 Score=32.60 Aligned_cols=163 Identities=10% Similarity=0.086 Sum_probs=93.7
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 038801 400 SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTI 479 (662)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 479 (662)
..|-...-+++..+..+.+..-.+.+..+|..-| -+-..|..++++|..+ ..++-..+|+++.+..+. | .....-
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-D-vv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-D-VVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-h-HHHHHH
Confidence 3455566677788888888888888888887764 3667778888888887 557777888887776532 2 233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcc------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038801 480 MTGLMENHRPELMAAFLDEVVEDPRVEV------KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL-QFEPNDQTYLSLIN 552 (662)
Q Consensus 480 l~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~ 552 (662)
+..+...++.+.+..+|.++... +-| -...|..++..- ..+.+..+.+..++... |..--.+.+.-+..
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 33333446666666666666543 111 112344433221 23445555555554432 33333344555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 038801 553 GYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~ 571 (662)
-|....++++|++++..+.
T Consensus 214 ~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 214 KYSENENWTEAIRILKHIL 232 (711)
T ss_pred HhccccCHHHHHHHHHHHh
Confidence 5555666666666666555
No 328
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.88 E-value=2.9 Score=24.77 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLA 350 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~ 350 (662)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5566666666666666666654
No 329
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.87 E-value=2.9 Score=24.73 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=11.2
Q ss_pred CChhhHHHHHHHHHHcCCHHHH
Q 038801 401 VGLGVYVPTLKAYCKEHRTAEA 422 (662)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A 422 (662)
-+...|+.+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3444555555555555555544
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.06 E-value=1e+02 Score=33.51 Aligned_cols=105 Identities=8% Similarity=-0.028 Sum_probs=51.8
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHH
Q 038801 149 LGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALE 228 (662)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 228 (662)
++.+.+.+.+++|+...+.....-...........++.-+.-.|++++|-...-.|. .-+...|..-+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~-----------gn~~~eWe~~V~ 431 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML-----------GNNAAEWELWVF 431 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh-----------cchHHHHHHHHH
Confidence 455566667777776665543321110122334445555556677777776666662 334555555555
Q ss_pred HHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 038801 229 GCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL 268 (662)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 268 (662)
.+... ++.... +.-+....-..+...|..++..+..
T Consensus 432 ~f~e~-~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 432 KFAEL-DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred Hhccc-cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 55543 433222 2222211112344556666666655
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.85 E-value=1.1e+02 Score=33.84 Aligned_cols=228 Identities=11% Similarity=0.006 Sum_probs=126.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCh-------hhHHHHHH-HHHHcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNACGCSVGL-------GVYVPTLK-AYCKEHRTAEATQLVMDISSS----GLQLDVGNYDALIE 446 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~~~~li~ 446 (662)
....++.+|..+..++...-..|+. ..++++-. +....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467889999888887654222222 13333322 233468889998888776554 22335667788888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHH-----HHHHhcCCH--HHHHHHHHHHhhCC----C-CccchhhHHH
Q 038801 447 ASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM-----TGLMENHRP--ELMAAFLDEVVEDP----R-VEVKTHDWNS 514 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll-----~~~~~~~~~--~~a~~~~~~~~~~~----~-~~p~~~~~~~ 514 (662)
+..-.|++++|..+..+..+....-+...+.... ..+...|+. .+.+..|....... + ..+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999999888776653333332222222 234556632 33333343333221 1 1122234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC--CCCCH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQ--FEPND--Q--TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNL 588 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~--~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~ 588 (662)
+..++.+ .+.+..-...-.+.| ..|.. . .+..|+......|+.++|...++++..-+. ..+..++-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~---~~~~~~~~~a 659 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL---NGQYHVDYLA 659 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc---CCCCCchHHH
Confidence 5555555 344433333332221 12322 2 223667777789999999999999984433 1222233322
Q ss_pred HHHHHH--HHHccCchHHHHHHHHHH
Q 038801 589 VDAFLY--ALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 589 ~~~l~~--~~~~~g~~~~A~~~~~~m 612 (662)
-...+. .....|+.++|.....+-
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 222233 345789999888888773
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.97 E-value=5.1 Score=24.65 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQK 358 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 358 (662)
.+++.|...|...|++++|.+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666665543
No 333
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.62 E-value=0.87 Score=38.43 Aligned_cols=85 Identities=7% Similarity=0.053 Sum_probs=52.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
+|..+.+.+..+....+++.+...+..-+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555566666777777777777655455667777777777777766777776661 111334556666677777
Q ss_pred HHHHHHHHHHHh
Q 038801 489 PELMAAFLDEVV 500 (662)
Q Consensus 489 ~~~a~~~~~~~~ 500 (662)
++++.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777666643
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.34 E-value=15 Score=31.85 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc----CCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHcc
Q 038801 525 LEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTA----EQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKG 599 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 599 (662)
+++|..-|++.+. +.|+. .++..+..+|... .+..+|..+|++..+.++. .....|+..+|+.-+....
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk--Av~~~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK--AVDEDPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--HHHH-TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH--HHhcCCCcHHHHHHHHHHH--
Confidence 3445555555554 57877 5888888888763 3344444555544433322 1257899999988777664
Q ss_pred CchHHHHHHHHHHHhCCC
Q 038801 600 GFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 600 g~~~~A~~~~~~m~~~~~ 617 (662)
.|-++-.++.+.+.
T Consensus 125 ----kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 ----KAPELHMEIHKQGL 138 (186)
T ss_dssp ----THHHHHHHHHHSSS
T ss_pred ----hhHHHHHHHHHHHh
Confidence 34555555554443
No 335
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.25 E-value=77 Score=31.12 Aligned_cols=127 Identities=11% Similarity=0.089 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh---cCCHHHHHH
Q 038801 490 ELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVT---AEQYFSVLM 565 (662)
Q Consensus 490 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~---~~~~~~a~~ 565 (662)
+.-+.++++..+.++ -+...+-.+|..+.+..+.++..+.++++... .| +...|...++.... .-.+++...
T Consensus 48 E~klsilerAL~~np--~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHNP--DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 444566666665422 34556777788888888888888888888875 34 45677777765554 345677777
Q ss_pred HHHHHHHhhcccCCCC-----Cccc--H---HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CC
Q 038801 566 MWHEIKRKISTDGQKG-----IKFE--H---NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VD 620 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~-----~~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~ 620 (662)
+|.+..+.+....... -.++ . .++..+...+..+|..+.|+.+++.+.+.++. |+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 7777665554332211 0111 1 23333344456899999999999999998874 44
No 336
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=77.21 E-value=68 Score=30.47 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=11.5
Q ss_pred cHHHHHHHHHhcCCHHH
Q 038801 475 SYLTIMTGLMENHRPEL 491 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~ 491 (662)
+|..|+.++|..|+.+.
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 56677777777776554
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.01 E-value=15 Score=32.81 Aligned_cols=58 Identities=10% Similarity=-0.064 Sum_probs=31.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 296 SLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQK 358 (662)
Q Consensus 296 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 358 (662)
.-++.+.+.+.+.+++....+-++.++. |..+-..+++-+|-.|++++|..-++-...
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-----da~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-----DAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-----cccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3444455555666666555555555432 444445555566666666666655555443
No 338
>PRK09687 putative lyase; Provisional
Probab=76.92 E-value=71 Score=30.57 Aligned_cols=229 Identities=11% Similarity=-0.013 Sum_probs=127.0
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCChhhHH
Q 038801 367 DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRT----AEATQLVMDISSSGLQLDVGNYD 442 (662)
Q Consensus 367 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~~ 442 (662)
|..+....+.++...|..+ +...+..+.. .+|...-...+.+++..|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 4444455566666655432 3333333333 34556666667777777763 4567777766433 45555555
Q ss_pred HHHHHHHcCCCH-----HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHH
Q 038801 443 ALIEASITSQDF-----QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIH 517 (662)
Q Consensus 443 ~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 517 (662)
..+.++...+.. ..+...+...... ++..+-...+.++.+.++ ..+...+-.+.++ ++..+-...+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHH
Confidence 556666554421 2233333333222 233455566677777665 4555666555553 22234444555
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHH
Q 038801 518 AFCKAG-RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL 596 (662)
Q Consensus 518 ~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~ 596 (662)
++++.+ +...+...+..+.. .+|...-...+.++.+.|+ ..|+..+-+.. +.+. .....+.++
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L-------~~~~-----~~~~a~~AL 245 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKEL-------KKGT-----VGDLIIEAA 245 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHH-------cCCc-----hHHHHHHHH
Confidence 555543 23456666666664 4566777777888888777 45666655555 3322 234567778
Q ss_pred HccCchHHHHHHHHHHHhCCCCCCHHhHHH
Q 038801 597 VKGGFFDAVMQVVEKSQEMKVFVDKWKYKQ 626 (662)
Q Consensus 597 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 626 (662)
...|.. +|+..+..+.+....+..-....
T Consensus 246 g~ig~~-~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred HhcCCH-hHHHHHHHHHhhCCChhHHHHHH
Confidence 888884 68888888776554544433333
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.68 E-value=47 Score=34.74 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
+..-|..|-++.... +++..|.+.|..... |..|+-.+...|+-+....+-....+.|. .|.-.
T Consensus 665 s~~Kw~~Lg~~al~~-~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF 728 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSA-GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAF 728 (794)
T ss_pred chHHHHHHHHHHhhc-ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHH
Confidence 344556666655555 666666666655442 33444555555555544444444444441 22233
Q ss_pred HHHHhcCChhhHHHHH
Q 038801 299 SGYVKLGNLESASRTI 314 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~ 314 (662)
-+|...|+++++.+++
T Consensus 729 ~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELL 744 (794)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3445556666665553
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.58 E-value=14 Score=32.06 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhCCCCC-CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHcc
Q 038801 525 LEDAKRTLRRMIFLQFEP-NDQ---TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKG 599 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p-~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 599 (662)
++.|.+.++.-... .| |.. -|...+.-+++.....++.+++++....+++ ...+.|+. .++..+..++...
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~ee--AL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEE--ALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHH--HHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH--HHhcCCchHHHHHHHHHHHHHH
Confidence 45555555553332 33 332 3444444444445555666666666554443 23677876 7888888877654
Q ss_pred Cc-----------hHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 038801 600 GF-----------FDAVMQVVEKSQEMKVFVDKWKYKQAFME 630 (662)
Q Consensus 600 g~-----------~~~A~~~~~~m~~~~~~p~~~~~~~~~~~ 630 (662)
|. +++|.+.|++..+.++.-+.+..-+..+.
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 43 56677777777776666556655555553
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.11 E-value=20 Score=32.08 Aligned_cols=79 Identities=10% Similarity=0.023 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHH
Q 038801 144 TVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYAC 223 (662)
Q Consensus 144 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (662)
|.+..++.+.+.+...+|+...++-++. .|.+......++.+++-.|++++|..-++-+.++.. ...+....|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p-----~~t~~a~ly 75 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP-----QDTVGASLY 75 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCc-----ccchHHHHH
Confidence 4556677888899999999988887775 477777788899999999999999988888766321 133445566
Q ss_pred HHHHHH
Q 038801 224 NAALEG 229 (662)
Q Consensus 224 ~~ll~~ 229 (662)
..+|..
T Consensus 76 r~lir~ 81 (273)
T COG4455 76 RHLIRC 81 (273)
T ss_pred HHHHHH
Confidence 666654
No 342
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=74.85 E-value=64 Score=29.03 Aligned_cols=185 Identities=12% Similarity=0.017 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH--HHHhcCCHHHHH
Q 038801 417 HRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT--GLMENHRPELMA 493 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~ 493 (662)
|-++-|.-=|.+.... .|+ ...||.+.--+...|+++.|.+.|+...+.+..- -|..+=+ ++.-.|++..|.
T Consensus 79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---hHHHhccceeeeecCchHhhH
Confidence 3333333334443332 443 4567777777777777777777777776654211 2222222 233456676666
Q ss_pred HHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKR-TLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 494 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
+-+...-...+..|=...|--++. +.-+..+|.. +.++.. ..|..-|...|-.|.- |+.. ...+++++.+
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a 224 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYL-GKIS-EETLMERLKA 224 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHh
Confidence 555554443333343333333332 2234555544 333443 2344444433333322 2221 1222333331
Q ss_pred hhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 573 KISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 573 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
-..+ ...--+.=..||-.|..-+...|+.++|..+|+-....+
T Consensus 225 ~a~~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 225 DATD-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccc-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1000 000001112577778888888999999999888776544
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.50 E-value=38 Score=35.35 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 408 (662)
+..-|..|..+..+.+++..|.+.|...+. |..|+-.+...|+-+....+-....+.|. .|.
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~ 726 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD------------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNL 726 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc------------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cch
Confidence 444555566666666666666555554332 33444445555554444444333333331 122
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 038801 409 TLKAYCKEHRTAEATQLVM 427 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~ 427 (662)
-.-+|...|+++++.+++.
T Consensus 727 AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 727 AFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 2334445555555555543
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.43 E-value=8 Score=22.48 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=18.6
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
+|..+...+...|++++|.+.+++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555666677777777777777776543
No 345
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.22 E-value=81 Score=29.92 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=28.2
Q ss_pred CcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 289 SQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIE 355 (662)
Q Consensus 289 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 355 (662)
++..+...+++.+++.+++.+-.++++...... +..-|...|..+|+.....|+..-..++.++
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~---~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNS---VPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccC---CCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 333444444444444444444444444433331 1122444444455555555554444444443
No 346
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.43 E-value=1e+02 Score=30.61 Aligned_cols=203 Identities=10% Similarity=-0.030 Sum_probs=95.2
Q ss_pred HHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 038801 75 LHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRN 154 (662)
Q Consensus 75 l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 154 (662)
..+.-+.|+|+...+......... ++...+..+... ..++.+.+...++.....+...-.......|......+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~--~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDS--PEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCC--hhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 345566777777444444433211 234444444433 5566666666665554444333222333444444444444
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhh--hhcCCCCccHHHHHHHHHHHhc
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALD--ENLDFMKPNIYACNAALEGCCY 232 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~ 232 (662)
...+.+..++.+-....... ......++-..-.|......-..+++.+...... ...........+|..+...+.+
T Consensus 81 lq~L~Elee~~~~~~~~~~~--~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN--PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 44333333333333211100 1111111111111111111222222222221110 0001123344577788888888
Q ss_pred cCCChhHHHHHHHHHHhcCCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038801 233 GLQSVSDAEKVIETMSVLGVRP---NESSFGFLAYLYALKGLQEKIVELESLMNE 284 (662)
Q Consensus 233 ~~~~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~~~~ 284 (662)
. |+++.|...+..+...+... +......-.+.+-..|+..+|...++...+
T Consensus 159 ~-g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 159 A-GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred C-CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7 99999999888887644222 223333345666677888888888877776
No 347
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=72.87 E-value=76 Score=28.97 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=45.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-----------CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038801 484 MENHRPELMAAFLDEVVEDPR-----------VEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN 552 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 552 (662)
...|+...|...++.....+| -.|.+.....|+..|. .+++++|.+++.++-+.|+.|.. ..+.+.+
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FR 280 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFR 280 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHH
Confidence 445666666665555443322 1456666677776654 57899999999999999988764 3444555
Q ss_pred HHH
Q 038801 553 GYV 555 (662)
Q Consensus 553 ~~~ 555 (662)
++-
T Consensus 281 v~K 283 (333)
T KOG0991|consen 281 VVK 283 (333)
T ss_pred HHH
Confidence 543
No 348
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.58 E-value=13 Score=27.06 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 038801 521 KAGRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMW 567 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~ 567 (662)
...+.++|+..|+...+.-..|.. .++..|+.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888777765333322 36777788888888887776654
No 349
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=72.48 E-value=11 Score=21.89 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKL 359 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 359 (662)
+|..+...|...|+.++|.+.|++..++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555666666777777777777666543
No 350
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.36 E-value=43 Score=25.93 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 562 SVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 562 ~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+..+-++.+. ..++.|++.+..+.+++|-|-.++..|+++++-++
T Consensus 28 e~rrglN~l~-------~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLF-------GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHT-------TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444445555 55666677666667777777777777777776664
No 351
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.33 E-value=35 Score=30.18 Aligned_cols=92 Identities=17% Similarity=0.031 Sum_probs=46.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCc-ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 038801 340 FLQNGNVKGLANLIIEAQKLEPSGI-VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 418 (662)
+.++|++++|..-|.+...+-+.-. ..-...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 4455666666666665544221111 1112233334445556666666666666665554 1122222223345666666
Q ss_pred HHHHHHHHHHHHhC
Q 038801 419 TAEATQLVMDISSS 432 (662)
Q Consensus 419 ~~~A~~~~~~m~~~ 432 (662)
+++|++=|.++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666654
No 352
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=72.20 E-value=2.7 Score=39.23 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=50.2
Q ss_pred HHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 596 LVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
..+.|+.++|..+|+......+. |++......+.+.++++-+|.+.+-+++.++|++
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 34789999999999999887775 8888888889999999999999999999998874
No 353
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.10 E-value=80 Score=28.94 Aligned_cols=118 Identities=11% Similarity=0.082 Sum_probs=70.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCccch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKT-HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ-TYLSLINGYVTAEQYFSV 563 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a 563 (662)
..+++.|+..+.+.+. +.|+. .-|+.-+.+|.+..+++.+..=-++.++ +.||.+ ..-.+..++.....+++|
T Consensus 23 ~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred hhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 3455666665555554 33443 3456666777778888877777666665 467664 444555666667778888
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHH
Q 038801 564 LMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEK 611 (662)
Q Consensus 564 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
+..+.+...... ...+.|...+...|..+--+.=...+..++.++
T Consensus 98 I~~Lqra~sl~r---~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLR---EQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHh---cCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888887753332 344445556666666664444444444444443
No 354
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=71.56 E-value=95 Score=29.55 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=65.8
Q ss_pred CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHH
Q 038801 252 VRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE 331 (662)
Q Consensus 252 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 331 (662)
++|+..+.......+...|--+-. ++++.-...| .-...-..|.+-..+...+++....+.+-+++...+....-..
T Consensus 219 fPpnkrs~E~Fak~Ft~agL~elv-ey~~~q~~~~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~i 295 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAGLKELV-EYHRNQQSEG--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGI 295 (412)
T ss_pred cCCcchhHHHHHHHHhHhhHHHHH-HHHHHHHHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEee
Confidence 367777766666666655532221 1111111101 1112233455555566667777777777777654332222234
Q ss_pred HHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHH
Q 038801 332 TYCEVVKGFLQNGNVK-GLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHS 389 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 389 (662)
.|..++++---+.+-+ -|.+.++.++ +|..|+.++|..|+.+...-
T Consensus 296 vWs~iMsaveWnKkeelva~qalrhlK------------~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 296 VWSGIMSAVEWNKKEELVAEQALRHLK------------QYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred eHhhhhHHHhhchHHHHHHHHHHHHHH------------hhhHHHHHHhcCChHHHHHH
Confidence 6887777655443322 2344444433 47789999999998776543
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.25 E-value=7.3 Score=22.34 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=10.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 038801 410 LKAYCKEHRTAEATQLVMDISS 431 (662)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~ 431 (662)
..++.+.|++++|.+.|+++.+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3344444555555555555444
No 356
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.13 E-value=6.8 Score=22.48 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=12.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444455555555555555554
No 357
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.84 E-value=96 Score=29.30 Aligned_cols=164 Identities=17% Similarity=0.047 Sum_probs=75.1
Q ss_pred hhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCch
Q 038801 80 LTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAA 159 (662)
Q Consensus 80 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 159 (662)
+++++++|++++..-- ..+.+.++...+......++....+.+...+......++..+...+.-+
T Consensus 2 ~~kky~eAidLL~~Ga---------------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~ 66 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA---------------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEE 66 (260)
T ss_dssp HTT-HHHHHHHHHHHH---------------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-
T ss_pred ccccHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCc
Confidence 4566777777654321 1233333333444444444444455555555555455555444333211
Q ss_pred -hHH----HHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccC
Q 038801 160 -PAF----ALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGL 234 (662)
Q Consensus 160 -~a~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 234 (662)
+-. +.+.+-...+....+......+...+.+.|++.+|+.-|-. +-.++...+-.++..+...
T Consensus 67 p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~-----------~~~~~~~~~~~ll~~~~~~- 134 (260)
T PF04190_consen 67 PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL-----------GTDPSAFAYVMLLEEWSTK- 134 (260)
T ss_dssp TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT-----------S-HHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh-----------cCChhHHHHHHHHHHHHHh-
Confidence 122 22222222223334556677888888889998888876653 2334444443344444443
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEF 285 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~ 285 (662)
|...++--..-+ .+--|.-.+++..|...++...+.
T Consensus 135 ~~~~e~dlfi~R---------------aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPSEADLFIAR---------------AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS--HHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHH---------------HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444443111111 222445567777777777665543
No 358
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.74 E-value=1.9e+02 Score=32.63 Aligned_cols=40 Identities=13% Similarity=0.358 Sum_probs=25.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh
Q 038801 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK 521 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 521 (662)
-.|+.....+.+..+++.+... .-..+....+.++..|+.
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHHH
Confidence 3456666677777888877765 233345566777766654
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.64 E-value=12 Score=27.35 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=37.5
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHH
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVV 609 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
..++.++|+..|+...+.. .-.++. .++..++.+++..|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~------~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKI------TDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhc------CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999422 223343 78888999999999999887764
No 360
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.96 E-value=1.1e+02 Score=29.54 Aligned_cols=95 Identities=7% Similarity=0.012 Sum_probs=52.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCccchhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCH----HH
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDEVVED---PRVEVKTHDWNSIIH-AFCKAGRLEDAKRTLRRMIFLQFEPND----QT 546 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~ 546 (662)
.......-||+.|+.+.|.+.+.+..++ .|.+.|+..+.+-+. .|....-..+-.+..+.+.+.|-..+- .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3444555677777777777777665443 355556544433322 223333345555566666677655544 24
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 547 YLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
|..+ -|....++.+|-.+|-+..
T Consensus 186 Y~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHH--HHHHHHhHHHHHHHHHHHc
Confidence 4433 2234466777777776666
No 361
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=69.49 E-value=1e+02 Score=29.08 Aligned_cols=97 Identities=6% Similarity=0.045 Sum_probs=61.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCccchhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----
Q 038801 473 KGSYLTIMTGLMENHRPELMAAFLDEVVED---PRVEVKTHDWN-SIIHAFCKAGRLEDAKRTLRRMIFLQFEPND---- 544 (662)
Q Consensus 473 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---- 544 (662)
...+..+..-|++.++.+.+.+++.+..++ .|.+.|+...- .|.-.|....-.++-++..+.|.+.|...+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 345666777888888888888888776553 35555543221 1223344444567778888888888766544
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.+|..+. +....++.+|-.++-+..
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 2443332 233467888888877777
No 362
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=69.12 E-value=1.9e+02 Score=32.03 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=24.9
Q ss_pred ccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhC
Q 038801 64 TQDNITSLETNLHKSLLTNNTDEAWKSFKSLTAN 97 (662)
Q Consensus 64 ~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~ 97 (662)
.......|+.+++.....+++.....+|+...+.
T Consensus 189 ~ar~~~~~~e~l~k~~~~~~p~lv~~~~~~~~~s 222 (835)
T KOG2168|consen 189 YARKAYIYNEVLHKLNKAGQPNLVDLLFNVASQS 222 (835)
T ss_pred HHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHh
Confidence 4456778888888887778877777777776643
No 363
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.02 E-value=4.9 Score=32.60 Aligned_cols=35 Identities=20% Similarity=0.048 Sum_probs=30.0
Q ss_pred HHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 038801 596 LVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFME 630 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~ 630 (662)
+-+.|.-..|..+|++|.+.|-.||.|..++..+.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPddW~~Ll~~a~ 139 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDDWDALLKEAK 139 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCccHHHHHHHhc
Confidence 34567788899999999999999999999987653
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.72 E-value=8.3 Score=21.02 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=9.9
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 038801 514 SIIHAFCKAGRLEDAKRTLR 533 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~ 533 (662)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34444555555555555443
No 365
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.63 E-value=50 Score=27.16 Aligned_cols=70 Identities=10% Similarity=-0.056 Sum_probs=51.1
Q ss_pred cccHHHHHHHHHHHHccCc---hHHHHHHHHHHHhCCCC---CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 583 KFEHNLVDAFLYALVKGGF---FDAVMQVVEKSQEMKVF---VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 583 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~---p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
.++..+--.+.+++.++.+ ..+.+.++++..+...+ -+-..|+...+...|+++.+.+..+.+++.||.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 5566666677888888766 45567788888752221 2356666777788899999999999999998764
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.18 E-value=12 Score=23.74 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666643
No 367
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.02 E-value=77 Score=29.80 Aligned_cols=87 Identities=10% Similarity=0.151 Sum_probs=59.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREA--RIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC 520 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 520 (662)
.=|++++..+++.+++...-+--+. .+||. ....-|-.|.+.+....+.++-.....+.+- -+..-|..++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyL 164 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYL 164 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHH
Confidence 3478888999999887765444332 23443 5666777788888888888887777665332 23334888877776
Q ss_pred h-----cCCHHHHHHHH
Q 038801 521 K-----AGRLEDAKRTL 532 (662)
Q Consensus 521 ~-----~g~~~~A~~~~ 532 (662)
. .|.+++|+++.
T Consensus 165 l~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 165 LHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhccccHHHHHHHH
Confidence 4 68888888876
No 368
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.00 E-value=2e+02 Score=31.06 Aligned_cols=28 Identities=7% Similarity=0.013 Sum_probs=0.0
Q ss_pred HccCchHHHHHHHHHHHhCCCCCCHHhH
Q 038801 597 VKGGFFDAVMQVVEKSQEMKVFVDKWKY 624 (662)
Q Consensus 597 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 624 (662)
.+.|++.+|.+.+-.+...+.-|..|..
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~ 533 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWP 533 (566)
T ss_dssp ----------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHH
Confidence 3558888888888777777777764443
No 369
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.90 E-value=17 Score=25.27 Aligned_cols=46 Identities=7% Similarity=0.156 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
.++..++.+.++ ..+-|..-.-.++.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR---------~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLR---------AQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------HHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555555 2334555556778899999999999999988743
No 370
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.44 E-value=11 Score=33.82 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=28.7
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
..++.+......+.+.+ -....|+..+|..++.++...|+.++|.+..+++.
T Consensus 120 ~~~~~~~l~~~~~~a~~------~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAER------LLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHH------HHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555443 22345666666666666666666666666666553
No 371
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.83 E-value=1.4e+02 Score=28.86 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIF----LQFEPNDQTYLSLI-NGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
...+-....-||+.||-+.|.+.+++..+ .|.+-|+..+.+=+ -.|....-..+-++..+.+. +.|-.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~li-------E~GgD 176 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLI-------EEGGD 176 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH-------HhCCC
Confidence 34455556667777777777666554433 45555655443322 22333333444444444444 45554
Q ss_pred ccH----HHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 584 FEH----NLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 584 p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
.+. .+|..+. |..-+++.+|-.+|-+.
T Consensus 177 WeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 177 WERRNRLKVYQGLY--CMSVRNFKEAADLFLDS 207 (393)
T ss_pred hhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHH
Confidence 443 2333322 33455666666666544
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.78 E-value=18 Score=23.03 Aligned_cols=25 Identities=36% Similarity=0.191 Sum_probs=16.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC
Q 038801 262 LAYLYALKGLQEKIVELESLMNEFG 286 (662)
Q Consensus 262 li~~~~~~g~~~~a~~~~~~~~~~g 286 (662)
+..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666777777777776666543
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.42 E-value=55 Score=25.26 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=47.3
Q ss_pred CchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCC
Q 038801 157 TAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQS 236 (662)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 236 (662)
..++|..+-+.+...+. ....+..+-+......|++++|..+.+.. ..||...|-++-.. + .|-
T Consensus 20 cHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----------~~pdlepw~ALce~--r-lGl 83 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKL-----------CYPDLEPWLALCEW--R-LGL 83 (115)
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCC-----------CCchHHHHHHHHHH--h-hcc
Confidence 44555555555554331 12222222223333678888888777764 57788877666543 2 266
Q ss_pred hhHHHHHHHHHHhcCCCCCcccH
Q 038801 237 VSDAEKVIETMSVLGVRPNESSF 259 (662)
Q Consensus 237 ~~~a~~~~~~m~~~g~~p~~~t~ 259 (662)
.+++..-+..|...| .|...+|
T Consensus 84 ~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 84 GSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHH
Confidence 666666666666665 4444444
No 374
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.16 E-value=1.2e+02 Score=27.84 Aligned_cols=22 Identities=5% Similarity=0.061 Sum_probs=15.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~ 541 (662)
+..+++.+|.++|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4567888888888888765433
No 375
>PRK09687 putative lyase; Provisional
Probab=63.17 E-value=1.4e+02 Score=28.51 Aligned_cols=219 Identities=10% Similarity=-0.004 Sum_probs=101.4
Q ss_pred CccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH----HHHHHHHHHHHhcCCCCcHH
Q 038801 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQ----EKIVELESLMNEFGFSSQMV 292 (662)
Q Consensus 217 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~----~~a~~~~~~~~~~g~~~~~~ 292 (662)
.+|.......+.++... |. +++...+..+.. .+|...=...+.++++.|+. +++...+..+... .++..
T Consensus 34 d~d~~vR~~A~~aL~~~-~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 34 DHNSLKRISSIRVLQLR-GG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred CCCHHHHHHHHHHHHhc-Cc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 44555555555556553 43 334444444433 23444444455666666653 3455555555332 25555
Q ss_pred hHHHHHHHHHhcCChh-----hHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc
Q 038801 293 FYSSLISGYVKLGNLE-----SASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD 367 (662)
Q Consensus 293 ~~~~li~~~~~~g~~~-----~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 367 (662)
+....+.+++..+... .+...+...+.+. +..+-...+.++++.++ .++...+-.+.. .+|
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~-------~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~------d~~ 172 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFDK-------STNVRFAVAFALSVIND-EAAIPLLINLLK------DPN 172 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhCC-------CHHHHHHHHHHHhccCC-HHHHHHHHHHhc------CCC
Confidence 5555666655543211 1222222222221 44444555666666555 334444444432 122
Q ss_pred cchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038801 368 RSVGFGIISACVNLG-LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIE 446 (662)
Q Consensus 368 ~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 446 (662)
..+-...+.++.+.+ .-..+...+..+.. .++..+....+.++.+.|+. .|...+-+..+.+ + .....+.
T Consensus 173 ~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ 243 (280)
T PRK09687 173 GDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIE 243 (280)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHH
Confidence 223333334444332 12334444444442 34555566666666666653 3444444444332 1 1234555
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 038801 447 ASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~ 466 (662)
++...|.. +|...+.++.+
T Consensus 244 ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 244 AAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHhcCCH-hHHHHHHHHHh
Confidence 55565553 45555555554
No 376
>PRK12798 chemotaxis protein; Reviewed
Probab=63.11 E-value=1.7e+02 Score=29.42 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=85.4
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCc----ccHHHHHHHH
Q 038801 191 NSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNE----SSFGFLAYLY 266 (662)
Q Consensus 191 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~ 266 (662)
.|+.++|.+.|..+.. ....+....|-.|+.+-.....++.+|+++|++..-. .|-+ .....-|-..
T Consensus 125 ~Gr~~~a~~~La~i~~-------~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la 195 (421)
T PRK12798 125 SGRGREARKLLAGVAP-------EYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIA 195 (421)
T ss_pred cCCHHHHHHHhhcCCh-------hhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHH
Confidence 7888888888887744 2355666677777766544448889999999887532 2332 2233334566
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcHH---hHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc
Q 038801 267 ALKGLQEKIVELESLMNEFGFSSQMV---FYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN 343 (662)
Q Consensus 267 ~~~g~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 343 (662)
...|+.+++..+-....+. +.-+++ .+..+...+.+.++-..-.+ +.+++...... --...|..+...-.-.
T Consensus 196 ~~~g~~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~---~q~~lYL~iAR~Ali~ 270 (421)
T PRK12798 196 AQLGDADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPE---RQRELYLRIARAALID 270 (421)
T ss_pred HhcCcHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCch---hHHHHHHHHHHHHHHc
Confidence 6778887766554444332 111111 12223333333332222222 24444442110 0234677777777777
Q ss_pred CCHHHHHHHHHHHHHh
Q 038801 344 GNVKGLANLIIEAQKL 359 (662)
Q Consensus 344 ~~~~~a~~~~~~m~~~ 359 (662)
|+.+-|.-.-++...+
T Consensus 271 Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 271 GKTELARFASERALKL 286 (421)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 7777766666666553
No 377
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=62.47 E-value=7 Score=26.06 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=19.5
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.+.-++.+.|++++|.++++.+.+..|.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 3455677888888888888888765544
No 378
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.46 E-value=60 Score=31.30 Aligned_cols=88 Identities=10% Similarity=0.022 Sum_probs=45.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 038801 339 GFLQNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH 417 (662)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (662)
.|.+.|.+++|++.|..... ..| |.+++..-..+|.+...+..|+.-....+..+ ..-...|+.-+.+-...|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia-----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA-----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhccchhHHHHHhhhhhc-----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 35566666677666665432 223 55666666666776666666665555544432 111223333333333445
Q ss_pred CHHHHHHHHHHHHhC
Q 038801 418 RTAEATQLVMDISSS 432 (662)
Q Consensus 418 ~~~~A~~~~~~m~~~ 432 (662)
+..+|.+=++.....
T Consensus 180 ~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhHHHHHhh
Confidence 555555555554443
No 379
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.93 E-value=9.6 Score=34.28 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=48.8
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
...+.|+.+.|.+++.+..+.-+. ...|..+..+-.+.|+.+.|.+++++.++++|.+-+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 356789999999999998765443 457777777778889999999999999999998753
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.46 E-value=46 Score=26.86 Aligned_cols=60 Identities=8% Similarity=0.045 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 239 DAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 239 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
+..+.++......+.|+.......+++|-+.+|+..|.++|+-++.. ..+...+|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 34455666666778888888888889999999999999988887654 2233335655543
No 381
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.23 E-value=28 Score=30.22 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=29.1
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhh
Q 038801 590 DAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKK 634 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~ 634 (662)
...+..|.+.|.+++|.+++++..+..-.+.. ...+......+|
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~-r~kL~~II~~Kd 158 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFSDPESQKL-RMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhcCCCchhH-HHHHHHHHHccc
Confidence 34556799999999999999998763222223 444555544444
No 382
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.20 E-value=21 Score=24.77 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
.-.+|.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555555443
No 383
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.88 E-value=76 Score=24.54 Aligned_cols=78 Identities=19% Similarity=0.069 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRD 463 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (662)
.++|..|-+-+...+.. ...+--+-+..+...|++++|..+.+.+ +.||...|.+|-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45566665555554421 2333333345667778888888877666 3778888766544 456666777777777
Q ss_pred HHHcC
Q 038801 464 MREAR 468 (662)
Q Consensus 464 m~~~~ 468 (662)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 77666
No 384
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.08 E-value=11 Score=36.21 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=10.6
Q ss_pred cCchHHHHHHHHHHHhCCCCCC
Q 038801 599 GGFFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~~~~p~ 620 (662)
.|++++|...+....+.++.+.
T Consensus 195 lg~~e~aa~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYDEA 216 (377)
T ss_pred hhchHHHHHHHHHHHhccccHH
Confidence 4445555555554444444443
No 385
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.45 E-value=2e+02 Score=28.72 Aligned_cols=96 Identities=8% Similarity=-0.049 Sum_probs=59.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHH-HccCchHHHHHHHHHHHhC---C---CCCCHHh
Q 038801 551 INGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL-VKGGFFDAVMQVVEKSQEM---K---VFVDKWK 623 (662)
Q Consensus 551 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~~---~---~~p~~~~ 623 (662)
|..+.+.|-+..|+++.+-+. ..+..-|+.-...+|+.| .++++++--+++.+..... . .-|+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl-------sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL-------SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH-------hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 556677888888988888888 333332444445555654 4788888888888776441 1 1355333
Q ss_pred HH-HHHHHHhhh--------------hhhhHHHHHHHHhhHHHHH
Q 038801 624 YK-QAFMENHKK--------------LKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 624 ~~-~~~~~~~~~--------------~~~a~~~~~~~~~l~p~~~ 653 (662)
.. +......++ .+.|.+++.+++..-|.-.
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 32 444443333 2788888888888877643
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.96 E-value=35 Score=30.46 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=22.4
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 505 VEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
..|+..+|..++..+...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666667777777777777777777776665
No 387
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=57.25 E-value=91 Score=30.19 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHH-HHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIF-----LQFEPNDQ-TYLSLINGY 554 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~-~~~~li~~~ 554 (662)
+..++...||..++.+++.+..+ .++.|++. .|..+-.-|
T Consensus 121 ~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 121 IARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 33444455666666666655555 45555442 444444433
No 388
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.90 E-value=13 Score=30.28 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 482 (662)
|.-..|..+|++|++.|-||| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 455567778888888877776 46655544
No 389
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.55 E-value=1.6e+02 Score=27.04 Aligned_cols=105 Identities=10% Similarity=0.120 Sum_probs=48.8
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHH
Q 038801 512 WNSIIHAFC--KAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLV 589 (662)
Q Consensus 512 ~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~ 589 (662)
|...++++. ..+++++|.+.+-.- .+.|+... -++.++...|+.+.|+.+++.+. -.... ....
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~-------p~l~s--~~~~ 144 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG-------PPLSS--PEAL 144 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC-------CCCCC--HHHH
Confidence 455555554 334555555554211 12222211 25555555677777776666544 11111 1222
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHh
Q 038801 590 DAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENH 632 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~ 632 (662)
..++.+ ..+|.+.||..+.+...+ ......+..++..|...
T Consensus 145 ~~~~~~-La~~~v~EAf~~~R~~~~-~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 145 TLYFVA-LANGLVTEAFSFQRSYPD-ELRRRLFEQLLEHCLEE 185 (226)
T ss_pred HHHHHH-HHcCCHHHHHHHHHhCch-hhhHHHHHHHHHHHHHH
Confidence 222222 455667777666655433 22233555555555543
No 390
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=55.99 E-value=23 Score=19.28 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=20.1
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
.+..+...+...|++++|...++...+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4556667777788888888888776543
No 391
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=55.14 E-value=2.1e+02 Score=27.91 Aligned_cols=111 Identities=6% Similarity=0.008 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhCCCC---ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038801 489 PELMAAFLDEVVEDPRV---EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLM 565 (662)
Q Consensus 489 ~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 565 (662)
.+.|.+.|+........ ..+...-..++....+.|+.+.-..+++.... ..+......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 46777778877764221 33444556666666777877666666666664 4567778888888888888888888
Q ss_pred HHHHHHHhhcccCCCC-CcccHHHHHHHHHHHHccCch--HHHHHHHHH
Q 038801 566 MWHEIKRKISTDGQKG-IKFEHNLVDAFLYALVKGGFF--DAVMQVVEK 611 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 611 (662)
+++... ..+ +++.. . ..++.++...+.. +.+.++++.
T Consensus 223 ~l~~~l-------~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLL-------SNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHH-------CTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHc-------CCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 888888 543 44333 2 3344444433333 666666543
No 392
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=54.92 E-value=1.7e+02 Score=26.58 Aligned_cols=177 Identities=12% Similarity=0.070 Sum_probs=100.2
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 038801 382 GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLF 461 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 461 (662)
|-+..|.--|.+..... +.-..+||-+.--+...|+++.|.+.|+...+....-+-...|.=| ++.-.|++.-|.+=|
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 33334444444444432 2335788888888899999999999999998763322222333222 234468888888877
Q ss_pred HHHHHcCCCCCcccHHHHHHH-HHhcCCHHHHHHHH-HHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038801 462 RDMREARIYDLKGSYLTIMTG-LMENHRPELMAAFL-DEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~-~~~~~~~~~a~~~~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (662)
.+.-+.+ +.| .|.+|=-- --..-++.+|..-+ ++... .|..-|...|-.|. .|++ ....++++++...
T Consensus 157 ~~fYQ~D-~~D--PfR~LWLYl~E~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~y-Lgki-S~e~l~~~~~a~a 226 (297)
T COG4785 157 LAFYQDD-PND--PFRSLWLYLNEQKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFY-LGKI-SEETLMERLKADA 226 (297)
T ss_pred HHHHhcC-CCC--hHHHHHHHHHHhhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHH-Hhhc-cHHHHHHHHHhhc
Confidence 7776654 222 23332221 12233455554333 33322 13334555554443 2333 1234455554421
Q ss_pred CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 540 FEPN-------DQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 540 ~~p~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.-+ ..||--|.+-+...|+.++|..+|+-..
T Consensus 227 -~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 227 -TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 211 2467778888888999999999998877
No 393
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=54.40 E-value=1e+02 Score=32.23 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=25.5
Q ss_pred HHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHH
Q 038801 594 YALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKL 640 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~ 640 (662)
..+.|.+++++|..+--++-. .|.+.-+.......|+.++|..
T Consensus 502 hhLLR~~rfekAFlLAvdi~~----~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 502 HHLLRYQRFEKAFLLAVDIGD----RDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred HHHHHhhHHHHHHHHHHhccc----hHHHHHHHHHHHhccchhhhhc
Confidence 334566777777776655432 3455555555666677766653
No 394
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.25 E-value=1.1e+02 Score=29.43 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHcCCCHHHHHH
Q 038801 382 GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYD--ALIEASITSQDFQSAFS 459 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~ 459 (662)
--+.+|+++|++.++.|- . .|.++.....--...+.+.++ ..++.+|. .+..+--+.|+..+|.+
T Consensus 230 ~Ti~~AE~l~k~ALka~e----~-------~yr~sqq~qh~~~~~da~~rR--Dtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAGE----T-------IYRQSQQCQHQSPQHEAQLRR--DTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhHHHHHHHHHHHHHHHH----H-------HHhhHHHHhhhccchhhhhhc--ccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 345566666666665431 1 122333333333334444443 22333332 22233335677777777
Q ss_pred HHHHHHHcCCCCCcc---cHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 460 LFRDMREARIYDLKG---SYLTIMTGLMENHRPELMAAFLDEV 499 (662)
Q Consensus 460 ~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~ 499 (662)
.|+++.+.- |-.. ....|+.++....-+.++..++.+.
T Consensus 297 ~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 297 IMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 776665442 1111 1223445555554444444444443
No 395
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.20 E-value=51 Score=21.41 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=16.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 267 ALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 267 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
.+.|-.+++..+++.|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554444
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.07 E-value=88 Score=25.35 Aligned_cols=45 Identities=9% Similarity=0.256 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 527 DAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+..+-+..+..-.+-|+......-+++|.+.+|+..|+.+|+.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445556666666788888888888899988899999999888887
No 397
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.77 E-value=50 Score=21.43 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=18.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
.+.|-..++...+++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555666666666666555555555444
No 398
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.80 E-value=1.4e+02 Score=24.75 Aligned_cols=68 Identities=7% Similarity=-0.024 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHHHhcC---CchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 038801 139 LLDFQTVHTLLGSMRNAN---TAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCR 206 (662)
Q Consensus 139 ~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 206 (662)
.++..+-..+.-++.+.. ++.+.+.+++++.+.........+.-.|.-.+.|.++++.++++++.+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 455666666777777665 45667899999997332233333444456667789999999999998876
No 399
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.74 E-value=1.3e+02 Score=24.52 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHH
Q 038801 158 AAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEE 203 (662)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 203 (662)
.++...+|..|.+.++-.....++......+-..|++.+|.++|+.
T Consensus 79 ~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 79 CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3568889999999998888888888888888899999999999873
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.64 E-value=1.7e+02 Score=25.72 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=29.0
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhcc
Q 038801 183 FLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYG 233 (662)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 233 (662)
..+..|.+.|.+++|.++|++... .|+......-+....+.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~----------d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS----------DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc----------CCCchhHHHHHHHHHHc
Confidence 456788899999999999999843 55555555555555544
No 401
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.64 E-value=2.5e+02 Score=27.69 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=63.5
Q ss_pred CCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCC-C-Cc
Q 038801 100 FPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYF-M-PF 177 (662)
Q Consensus 100 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~ 177 (662)
.|++.+.-.++..|....+.++..-+-..+. ...+.+-.++...+.....+.+..+.+..-.. + .-
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f~------------~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~ql 139 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIFF------------PLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQL 139 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHHH------------HHHHHHHHHHHhcCCccccchHHHHHHHHhccCccch
Confidence 3666666667777766666555544443332 24445555666666666655555444432111 1 12
Q ss_pred ccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHH-HhccCCChhHHHHHHHHHH
Q 038801 178 ELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEG-CCYGLQSVSDAEKVIETMS 248 (662)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~a~~~~~~m~ 248 (662)
......+...|.+.+++..+...++.-.--.- ......+|.....-.+-.+ .+-..++++.|+.+|+...
T Consensus 140 T~~H~~l~~~~L~ak~y~~~~p~ld~divei~-~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 140 TSIHADLLQLCLEAKDYASVLPYLDDDIVEIC-KANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICV 210 (422)
T ss_pred hhhHHHHHHHHHHhhcccccCCccchhHHHHh-ccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHH
Confidence 22344455556566666555544432211000 0001122222211111111 1222378888888888776
No 402
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=51.53 E-value=1.4e+02 Score=27.29 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc---cchHH--HHHHHHHhcCChHHHHHHHHHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD---RSVGF--GIISACVNLGLSDKAHSILDEMN 395 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~~~--~ll~~~~~~~~~~~a~~~~~~m~ 395 (662)
...-+|.||--|.-...+.+|.+.|..- .++.+. ..++. .-|......|+.++|++....+.
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e-----~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKE-----SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccc-----cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 4445555555555555555555555332 333331 11111 23455556666666666555543
No 403
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.26 E-value=2.9e+02 Score=28.25 Aligned_cols=205 Identities=15% Similarity=0.046 Sum_probs=98.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHH--hHHHHHHHHHhcCChhhH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESS--FGFLAYLYALKGLQEKIVELESLMNEFGFSSQMV--FYSSLISGYVKLGNLESA 310 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A 310 (662)
|+.+.+..+ .+.|..|+... ..+.+..++..|+.+-+ +.+.+.|..|+.. .....+...++.|+.+.+
T Consensus 13 g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 13 GELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred CCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 776554444 45676666543 34456677778887643 4445566555432 122345556677888776
Q ss_pred HHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccch--HHHHHHHHHhcCChHHHH
Q 038801 311 SRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSV--GFGIISACVNLGLSDKAH 388 (662)
Q Consensus 311 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~ 388 (662)
..++. .........+.... +.+...+..|+.+-+..+++ .|..|+... -.+.+...+..|+.+-+.
T Consensus 85 ~~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv~~Ll~-------~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 85 EELLD----LGKFADDVFYKDGM-TPLHLATILKKLDIMKLLIA-------RGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHH----cCCcccccccCCCC-CHHHHHHHhCCHHHHHHHHh-------CCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 55532 21100000011111 23333445666654444433 344443221 123445555677765444
Q ss_pred HHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHcCCCHHHHHHHHH
Q 038801 389 SILDEMNACGCSVGL---GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN---YDALIEASITSQDFQSAFSLFR 462 (662)
Q Consensus 389 ~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~ 462 (662)
.+.+.|..++. .-.+ .+...+..|+.+ +.+.+.+.|..++... ..+.+...+..|+.+- .+
T Consensus 153 ----~Ll~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~ 219 (413)
T PHA02875 153 ----LLIDHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VR 219 (413)
T ss_pred ----HHHhcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HH
Confidence 34455543332 2222 333445556654 4455566776665432 2344554455666544 34
Q ss_pred HHHHcCCCCC
Q 038801 463 DMREARIYDL 472 (662)
Q Consensus 463 ~m~~~~~~~~ 472 (662)
-+.+.|..++
T Consensus 220 ~Ll~~gad~n 229 (413)
T PHA02875 220 LFIKRGADCN 229 (413)
T ss_pred HHHHCCcCcc
Confidence 4445554443
No 404
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=50.38 E-value=2.8e+02 Score=27.85 Aligned_cols=26 Identities=8% Similarity=0.211 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
..|.|+..|...+.++.|..+..+..
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~ 236 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSV 236 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhccc
Confidence 34555666666666666666555443
No 405
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=49.31 E-value=2.3e+02 Score=27.58 Aligned_cols=120 Identities=8% Similarity=0.001 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHH
Q 038801 525 LEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT------AEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALV 597 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~------~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 597 (662)
++++..++++....+. |........|.++-. .-+|.....+|+-+. .+.|++ ++.|.-+. ..
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---------~~apSPvV~LNRAVA-la 340 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---------QAAPSPVVTLNRAVA-LA 340 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---------HhCCCCeEeehHHHH-HH
Confidence 5666777777666653 666666666655532 245666666666666 344554 44444332 23
Q ss_pred ccCchHHHHHHHHHHHhCCC-C--CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHHH
Q 038801 598 KGGFFDAVMQVVEKSQEMKV-F--VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAFK 655 (662)
Q Consensus 598 ~~g~~~~A~~~~~~m~~~~~-~--p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~~ 655 (662)
+.--.+.++.+++-+.+.+- . .-.+..-...+...|..++|..++++.++|.+..+-+
T Consensus 341 ~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 341 MREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 33334556666666544311 1 1122223566677777777777777777775544433
No 406
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.79 E-value=6.8e+02 Score=31.87 Aligned_cols=61 Identities=5% Similarity=-0.106 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHhh
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l 648 (662)
.+|-...+..-++|+++.|...+=++.+.+ .|.+.-......-..|+...|...++..+++
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 677777777778999999988887776665 5666666666666778888887777777754
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.46 E-value=84 Score=23.97 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=35.7
Q ss_pred HhcCCHHHHHHHHHHHHHhhcccCCCCCcc----cHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 555 VTAEQYFSVLMMWHEIKRKISTDGQKGIKF----EHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.+.|++.+|.+-+.+..+.... .+... -....-.+.......|++++|...+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~---~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQ---SNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhh---cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4568899987777777644332 22222 11222334455678999999999999874
No 408
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=47.58 E-value=4.1e+02 Score=29.01 Aligned_cols=65 Identities=11% Similarity=0.084 Sum_probs=39.6
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC-------hhhHHHHHHHHHcC
Q 038801 255 NESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGN-------LESASRTILLCLGG 320 (662)
Q Consensus 255 ~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~ 320 (662)
+....=.+|--|.|.|++++|.++.....+. .......+...+..|....+ -+....-|.+.++.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 3334445778889999999999999555443 34445566777788776532 12344445555554
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.27 E-value=1.2e+02 Score=24.79 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHH
Q 038801 562 SVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEK 611 (662)
Q Consensus 562 ~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
++.++|+.|. .+|+--. ...|......+.+.|++++|.++++.
T Consensus 81 ~~~~if~~l~-------~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLY-------SKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHH-------HHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHH-------HcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666 4454333 35556666666667777777766654
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.69 E-value=93 Score=23.73 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=11.5
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 038801 376 SACVNLGLSDKAHSILDEMNA 396 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~ 396 (662)
......|+.++|.+.+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344455666666666555543
No 411
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=45.24 E-value=1.7e+02 Score=23.87 Aligned_cols=85 Identities=13% Similarity=-0.012 Sum_probs=54.9
Q ss_pred CcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHH-hcCCCCCcccHHHHHHHHHHcC
Q 038801 192 SNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMS-VLGVRPNESSFGFLAYLYALKG 270 (662)
Q Consensus 192 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~t~~~li~~~~~~g 270 (662)
.++..|+.-|++..... ....+......+|..|-.. ++.++++++... ..|+. +..+-..+++...+.|
T Consensus 4 ~~~~kAl~~L~ea~~~~------~~~~~~~~~dg~IqrFE~t---~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~g 73 (124)
T PF08780_consen 4 ENFKKALSRLEEALEKY------EDPLSELERDGVIQRFEFT---FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAG 73 (124)
T ss_dssp HHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc------cCcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcC
Confidence 34566777777776521 0244555667777777655 788888888854 45764 5556677888888888
Q ss_pred CHHHHHHHHHHHHhcC
Q 038801 271 LQEKIVELESLMNEFG 286 (662)
Q Consensus 271 ~~~~a~~~~~~~~~~g 286 (662)
-++.....++.+..++
T Consensus 74 lI~d~e~Wl~m~~~RN 89 (124)
T PF08780_consen 74 LIDDGEIWLDMLEDRN 89 (124)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc
Confidence 7776666555555443
No 412
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.14 E-value=1.5e+02 Score=27.05 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc---cHHHH--HHHHHHHHccCchHHHHHHHHHHH
Q 038801 540 FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF---EHNLV--DAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 540 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+.++..-+|.|+--|.-+..+.+|-+.|..-. |+.| |..++ ..-|......|++++|++.+....
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---------~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---------GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---------CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 34455556666555555555555555544322 4443 22222 233445567777777777776653
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.14 E-value=2.2e+02 Score=28.77 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=36.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCccchh--hHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 038801 480 MTGLMENHRPELMAAFLDEVVEDPRVEVKTH--DWNSIIHAFC--KAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 480 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~ 537 (662)
...+.+.+++..|.++++.+..+ +.++.. .|..+..+|. ..-++++|.+.++....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34556778888888888888775 333332 4555555554 35567788888877664
No 414
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=44.97 E-value=2.3e+02 Score=25.37 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=42.2
Q ss_pred cccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchh
Q 038801 63 LTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHN 121 (662)
Q Consensus 63 ~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 121 (662)
........++.+++.+..+|+++.|-+.|--+.......-...|..-+..+.+.+....
T Consensus 36 ~r~~Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~ 94 (199)
T PF04090_consen 36 LRKQHLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNS 94 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcch
Confidence 34445667889999999999999999999998865322112357777777777765433
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.94 E-value=1.9e+02 Score=30.43 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 038801 238 SDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLC 317 (662)
Q Consensus 238 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 317 (662)
+-+-.+|..|... +.|--...|..---....|+...|...+.......-.-..+....|.....+.|...+|..++.+.
T Consensus 590 e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 3345555555422 233333333221112234555555554443332211111122233444455555666666666555
Q ss_pred HcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 038801 318 LGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSG 363 (662)
Q Consensus 318 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 363 (662)
+.-.. -.+.++..+.+++....+.++|++.|++..+..+..
T Consensus 669 l~~~~-----sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 669 LAINS-----SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred Hhhcc-----cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence 54321 134455666666666777777777776666655553
No 416
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.58 E-value=1.5e+02 Score=27.67 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCC-cccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 548 LSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGI-KFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 548 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
-.+..-|.+.|++++|.++|+.+...+. +.|- .+...+...+..+..+.|+.+..+.+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr---~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYR---REGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3556667778888888888888764444 2332 344566677777777888887776665444
No 417
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.40 E-value=1.9e+02 Score=24.30 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=60.4
Q ss_pred CCccH--HHHHHHHHHHhccCCChhHHHHHHHHHHhcC-----CCCCcccHHHHHHHHHHcCC-HHHHHHHHHHHHhcCC
Q 038801 216 MKPNI--YACNAALEGCCYGLQSVSDAEKVIETMSVLG-----VRPNESSFGFLAYLYALKGL-QEKIVELESLMNEFGF 287 (662)
Q Consensus 216 ~~~~~--~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~~~~~g~ 287 (662)
..++. ...|+++.-.... +++...+.+++.+.-.. -..+..+|++++++.++... --.+..+|+.|++.+.
T Consensus 33 ~~~~~k~~fiN~iL~hl~~~-~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~ 111 (145)
T PF13762_consen 33 ASQSTKTIFINCILNHLASY-QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDI 111 (145)
T ss_pred cChhHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCC
Confidence 44444 3567888877776 88888888888874321 02355678888888766655 3456677888887777
Q ss_pred CCcHHhHHHHHHHHHhc
Q 038801 288 SSQMVFYSSLISGYVKL 304 (662)
Q Consensus 288 ~~~~~~~~~li~~~~~~ 304 (662)
+.+..-|..+|.++.+.
T Consensus 112 ~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 112 EFTPSDYSCLIKAALRG 128 (145)
T ss_pred CCCHHHHHHHHHHHHcC
Confidence 78888888888776655
No 418
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.27 E-value=9.4e+02 Score=32.22 Aligned_cols=222 Identities=13% Similarity=0.043 Sum_probs=111.8
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcC----CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHH
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLG----VRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYV 302 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 302 (662)
+..+.+.-|-+..++.+++...... ..++..+..++...|....+.|.--.+++.-. ..|+. ...-.|.
T Consensus 2421 i~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~---~~~eT----~~a~s~e 2493 (3550)
T KOG0889|consen 2421 IKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLNEEDMFYGLWRRRA---KFPET----MVALSYE 2493 (3550)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh---ccHHH----HHHHHHH
Confidence 3333333244666666666543221 23445555555555555555444333333221 12222 2334577
Q ss_pred hcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH
Q 038801 303 KLGNLESASRTILLCLGGGNMEQSDFSKETYCE----VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC 378 (662)
Q Consensus 303 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~ 378 (662)
..|.+++|..+|++.+.........-+..-|.. .|.++.+..+|+-..++-. ....+..++.+.
T Consensus 2494 Q~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k------------~~~~~~llle~a 2561 (3550)
T KOG0889|consen 2494 QLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFGK------------HEGNYELLLECA 2561 (3550)
T ss_pred HhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccCCceeeeehh
Confidence 888999999988887765332222223333433 3444444555554443331 111233456666
Q ss_pred HhcCChHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHhCC-----CCCChhhH--HHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNACGC---SVGLGVYVPTLKAYCKEHR-TAEATQLVMDISSSG-----LQLDVGNY--DALIEA 447 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g-----~~~~~~~~--~~li~~ 447 (662)
-+..++..-...+....+.-. .+...+|.+++..+.+..+ ..+...+.++..+.. --|..+++ ..++++
T Consensus 2562 Wrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~ 2641 (3550)
T KOG0889|consen 2562 WRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQA 2641 (3550)
T ss_pred ccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHH
Confidence 677777766666665554322 2234555555554444322 334444444333221 13444443 356777
Q ss_pred HHcCCCHHHHHHHHHHHHHc
Q 038801 448 SITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~ 467 (662)
+.+--...+|..++....+.
T Consensus 2642 ~QqivEl~Ea~~I~s~l~~~ 2661 (3550)
T KOG0889|consen 2642 FQQIVELQEAAQIYSDLNDG 2661 (3550)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 77777777777777766554
No 419
>PRK10941 hypothetical protein; Provisional
Probab=43.97 E-value=2.3e+02 Score=26.87 Aligned_cols=54 Identities=11% Similarity=-0.146 Sum_probs=21.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 410 LKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
-.+|.+.++++.|+++.+.+... .| |..-+.--.-.|.+.|.+..|..=++..+
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 33344444444444444444443 22 22223333333444444444444444333
No 420
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=43.96 E-value=3e+02 Score=26.38 Aligned_cols=17 Identities=18% Similarity=-0.025 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHhCCC
Q 038801 524 RLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~ 540 (662)
+.++|...|+...+.|.
T Consensus 206 d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 56677777777776653
No 421
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=43.34 E-value=2.4e+02 Score=25.06 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=9.2
Q ss_pred cCCCHHHHHHHHHHHHH
Q 038801 450 TSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~ 466 (662)
+.|+++.|.+.++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34555666555555543
No 422
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.10 E-value=1.4e+02 Score=22.42 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHHHHH
Q 038801 451 SQDFQSAFSLFRDMR 465 (662)
Q Consensus 451 ~g~~~~A~~~~~~m~ 465 (662)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 423
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.98 E-value=1.7e+02 Score=23.18 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888877776
No 424
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.76 E-value=3.7e+02 Score=27.14 Aligned_cols=57 Identities=9% Similarity=0.238 Sum_probs=39.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCcc--cHHHHHHHHH--hcCCHHHHHHHHHHHhhC
Q 038801 445 IEASITSQDFQSAFSLFRDMREARIYDLKG--SYLTIMTGLM--ENHRPELMAAFLDEVVED 502 (662)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 502 (662)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455889999999999999987 666554 3344444443 356678888888876653
No 425
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=42.34 E-value=3.9e+02 Score=27.24 Aligned_cols=443 Identities=11% Similarity=-0.005 Sum_probs=0.0
Q ss_pred HHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 038801 73 TNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSM 152 (662)
Q Consensus 73 ~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 152 (662)
.++..|...|+..-|..-+.++-.+.+.| -.+-..+--+.-+..+-.+....+-..+......|. .++..+++.+
T Consensus 55 sii~eyfstgdv~vaa~dl~elg~seyhp-yfvkrlvsmamdrhdkekemasvlls~lyadvi~p~----qir~gf~~ll 129 (645)
T KOG0403|consen 55 SIIDEYFSTGDVVVAASDLKELGSSEYHP-YFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPD----QIRDGFIRLL 129 (645)
T ss_pred HHHHHHccCCCchhhHHHHHHhccccccH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChH----HHHHHHHHHH
Q ss_pred HhcC----CchhHHHHHHHHHh----cCCCCCcc----------------------------------------------
Q 038801 153 RNAN----TAAPAFALVKCMFK----NRYFMPFE---------------------------------------------- 178 (662)
Q Consensus 153 ~~~~----~~~~a~~~~~~~~~----~~~~~~~~---------------------------------------------- 178 (662)
...+ ++..|..++.-.+. ..+.|+..
T Consensus 130 ~s~ddl~vdipdavnvlalfiaraivddilpp~fl~r~~k~lp~~skg~qV~~~aeksylsap~hae~ve~~wGg~~n~t 209 (645)
T KOG0403|consen 130 ESADDLAVDIPDAVNVLALFIARAIVDDILPPAFLKRAKKLLPDSSKGFQVINTAEKSYLSAPHHAELVELFWGGETNAT 209 (645)
T ss_pred HhcccceecCchHHHHHHHHHHHHHHHhccChHHHHHHHhhCCCcccchhHHHHHHhhccCCCchhhHHHhhhCCCcccc
Q ss_pred -----cHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCC
Q 038801 179 -----LWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVR 253 (662)
Q Consensus 179 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~ 253 (662)
.-.+-++.-|...|+..+|.++..+ ...+...-..+-+++... +.-..|..+.-.+...+..
T Consensus 210 ~EEvK~kIn~~l~eyv~~getrea~rciR~------------L~vsffhhe~vkralv~a-me~~~ae~l~l~llke~~e 276 (645)
T KOG0403|consen 210 VEEVKNKINGNLIEYVEIGETREACRCIRE------------LGVSFFHHEGVKRALVDA-MEDALAEGLTLKLLKEGRE 276 (645)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHH------------hCCCchhhHHHHHHHHHH-Hhhhhcccceeccchhhhh
Q ss_pred CCcccHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCC
Q 038801 254 PNESSFGFLAYLYALKG--------LQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQ 325 (662)
Q Consensus 254 p~~~t~~~li~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 325 (662)
-+...-.-+.+++.+.+ +...|...|+...-....-+-..-+.+-..-...|+.+. .+.|.+-+..
T Consensus 277 ~glissSq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk~~~~----- 350 (645)
T KOG0403|consen 277 EGLISSSQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKKDLTP----- 350 (645)
T ss_pred hcchhhhccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHHhhHH-----
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 038801 326 SDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGV 405 (662)
Q Consensus 326 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 405 (662)
+|+-|...|+..+..+.++++.. ....|-...+..-+..=.+...-+.|-.++..+.-. +-++..+
T Consensus 351 ----------IIqEYFlsgDt~Evi~~L~DLn~---~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv 416 (645)
T KOG0403|consen 351 ----------IIQEYFLSGDTPEVIRSLRDLNL---PEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDV 416 (645)
T ss_pred ----------HHHHHHhcCChHHHHHHHHHcCC---ccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHH
Q ss_pred HHHHHHHHHHcCC----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc--------------
Q 038801 406 YVPTLKAYCKEHR----TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA-------------- 467 (662)
Q Consensus 406 ~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------- 467 (662)
-+.++..+-...+ .-.|-+.+.....+-+--++..=..+=....+......+.+.++.....
T Consensus 417 ~~~F~mLLesaedtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~W 496 (645)
T KOG0403|consen 417 EKGFDMLLESAEDTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVW 496 (645)
T ss_pred HHHHHHHHhcchhhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhhee
Q ss_pred -------CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 468 -------RIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 468 -------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
.+..-..-...|+.-|...|.+.+|.+.++++.- +.-....++.+++.+.-+.|+-+..+.++++.-
T Consensus 497 GgGG~g~sVed~kdkI~~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf---- 570 (645)
T KOG0403|consen 497 GGGGGGWSVEDAKDKIDMLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMILDLLKECF---- 570 (645)
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH----
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 038801 541 EPNDQTYLSLINGYVTAEQ 559 (662)
Q Consensus 541 ~p~~~~~~~li~~~~~~~~ 559 (662)
.-...|-+.+-++|.+..+
T Consensus 571 ~sglIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 571 KSGLITTNQMTKGFERVYD 589 (645)
T ss_pred hcCceeHHHhhhhhhhhhc
No 426
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.33 E-value=1e+02 Score=20.57 Aligned_cols=31 Identities=10% Similarity=-0.108 Sum_probs=24.3
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 623 KYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 623 ~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
.++..++...|+.+.|++..+.++++||.+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 4455566788999999999999999999764
No 427
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.28 E-value=1.5e+02 Score=22.35 Aligned_cols=67 Identities=7% Similarity=0.006 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHH
Q 038801 563 VLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKL 640 (662)
Q Consensus 563 a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~ 640 (662)
+.++++... +.|+- +..-.+.+-.+-...|+.+.|.++++.+. .| |+.+..++...+..|.-.+|..
T Consensus 21 ~~~v~d~ll-------~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCL-------EQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHH-------hcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--CcHHHHHHHHHHHcCchhhhhc
Confidence 455666666 56642 22233333333346799999999999997 44 5688888888888877666643
No 428
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.90 E-value=3.8e+02 Score=26.98 Aligned_cols=137 Identities=13% Similarity=0.004 Sum_probs=74.6
Q ss_pred hhhhHHHHHHH--HHhhCChhHHHHHHHHhhhCCCCCChhhHH--------HHHHHHhccCCchhHHHHHHHHHHHHHhC
Q 038801 67 NITSLETNLHK--SLLTNNTDEAWKSFKSLTANSLFPSKPVTN--------SLIAHLSSLQDNHNLKRAFASVVYVIEKN 136 (662)
Q Consensus 67 ~~~~~~~~l~~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~--------~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (662)
....|-.++-. +..++++.+|..+-+.....-.--+..++. .+-.++...++.......+...+.-....
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 44555544443 344688888888877665432112333332 22233334455444444444443333333
Q ss_pred CCCCCh-HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCccc------HHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 038801 137 PKLLDF-QTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFEL------WGGFLVDICRKNSNFVAFLKVFEECCRI 207 (662)
Q Consensus 137 ~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 207 (662)
...... ...|.+++.|...+.++.|..+.....- |.... +.-.+....+-.+++..|.+.|-.+.+.
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~----pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY----PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC----ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 222222 3467888888999999999887766542 22211 1112233333468899999999888773
No 429
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.88 E-value=51 Score=31.40 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038801 261 FLAYLYALKGLQEKIVELESLMNEFG 286 (662)
Q Consensus 261 ~li~~~~~~g~~~~a~~~~~~~~~~g 286 (662)
..|....+.||+++|+.++++.++.|
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG 287 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLG 287 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44444444455555555554444444
No 430
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.71 E-value=3.5e+02 Score=26.54 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQF-EPND 544 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~ 544 (662)
.+..-..++|..+.|..+++.+.+.++ .|+.
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 333445578999999999999998654 4443
No 431
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.48 E-value=1.7e+02 Score=31.27 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=47.4
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhc--CCCCCcccHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCCCcHHhHHH
Q 038801 225 AALEGCCYGLQSVSDAEKVIETMSVL--GVRPNESSFGFLAYLYALKGLQE------KIVELESLMNEFGFSSQMVFYSS 296 (662)
Q Consensus 225 ~ll~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~------~a~~~~~~~~~~g~~~~~~~~~~ 296 (662)
+++.+|..+ |++-.+.++++..... |-+.=...||..|+...+.|.++ .+.++++.. -+.-|..||..
T Consensus 33 sl~eacv~n-~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYN-GDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHH
Confidence 778888887 8888888888887653 22222345777777777777654 233333333 24567777777
Q ss_pred HHHHHHh
Q 038801 297 LISGYVK 303 (662)
Q Consensus 297 li~~~~~ 303 (662)
|+.+-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 7665433
No 432
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=40.90 E-value=4.6e+02 Score=27.72 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=10.7
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 038801 235 QSVSDAEKVIETMSVLGVR 253 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~ 253 (662)
|+.++|+.+++++...|..
T Consensus 271 ~d~~~Al~~l~~L~~~g~~ 289 (507)
T PRK06645 271 RETEKAINLINKLYGSSVN 289 (507)
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 5555555555555555543
No 433
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.88 E-value=1.2e+02 Score=21.02 Aligned_cols=50 Identities=10% Similarity=0.191 Sum_probs=34.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHH-----HccCchHHHHHHH
Q 038801 553 GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL-----VKGGFFDAVMQVV 609 (662)
Q Consensus 553 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~ 609 (662)
.+...|++-+|-++++++- ...-.+....+..||... .+.|+.+.|..++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W-------~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELW-------KAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHC-------CCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHH-------HHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 3456799999999999998 333334556777776643 3688888887654
No 434
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.86 E-value=3e+02 Score=25.49 Aligned_cols=85 Identities=9% Similarity=-0.005 Sum_probs=50.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHcCCCHH
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGL-GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN-YDALIEASITSQDFQ 455 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~ 455 (662)
|.....+..|+.-|.+.+.. .|+. .-|+.-+-++.+..+++.+..--....+. .||.+- ..-+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 44445666777766555554 3554 44555566677777777777666665553 455433 333445556667777
Q ss_pred HHHHHHHHHHH
Q 038801 456 SAFSLFRDMRE 466 (662)
Q Consensus 456 ~A~~~~~~m~~ 466 (662)
+|+..+.+...
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 77777776643
No 435
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.80 E-value=1.8e+02 Score=22.98 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISS 431 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (662)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466667777777777777777766665
No 436
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=39.62 E-value=1.4e+02 Score=25.24 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=24.7
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh
Q 038801 391 LDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN 440 (662)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 440 (662)
...+.+.|++++.. -..++..+...++.-.|.++|+++.+.+...+..|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33444555544422 23345555555555666666666666544444333
No 437
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=39.56 E-value=3.4e+02 Score=25.79 Aligned_cols=129 Identities=9% Similarity=0.042 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHhhCChhHHHHHHHHhhhC-----CCC-C-------ChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHh
Q 038801 69 TSLETNLHKSLLTNNTDEAWKSFKSLTAN-----SLF-P-------SKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEK 135 (662)
Q Consensus 69 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-----~~~-p-------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (662)
..+.....-+.-..|+..|++.-++-.+. +.. + ....+..-|++++..+++.++....-... .
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyY----q 111 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYY----Q 111 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHh----c
Confidence 34444445555677777777775554321 111 1 12345566888888888765554443322 4
Q ss_pred CCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHH-----HHHHhhcCCcHHHHHHHHH
Q 038801 136 NPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGF-----LVDICRKNSNFVAFLKVFE 202 (662)
Q Consensus 136 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~ 202 (662)
.+....+.+...-|-.|.+.+.+..+.++-..-.+......... |.. |.+.+.-.|.+++|+++..
T Consensus 112 ~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~-y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 112 VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPE-YGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchh-hHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 45556677888888899999999999999888887543333333 333 3444445689999988773
No 438
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=39.46 E-value=96 Score=21.82 Aligned_cols=50 Identities=10% Similarity=0.197 Sum_probs=28.5
Q ss_pred ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 038801 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK 415 (662)
Q Consensus 365 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (662)
.|....++.++..+++..-.++++..+.+..+.|. .+..+|---++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666663 445555555544444
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.32 E-value=2.2e+02 Score=28.81 Aligned_cols=118 Identities=7% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH---------------HHhCCCCCCHHHHHHHHHHHHhc
Q 038801 493 AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRR---------------MIFLQFEPNDQTYLSLINGYVTA 557 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---------------m~~~~~~p~~~~~~~li~~~~~~ 557 (662)
.+-...+.+..+-..+...--.++..+....++.+.++..+. +.. ...-.+...|++.++-.
T Consensus 59 ~~e~~~l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~---~LGYFSligLlRvh~LL 135 (404)
T PF10255_consen 59 EEEIQLLKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYK---MLGYFSLIGLLRVHCLL 135 (404)
T ss_pred HHHHHHHHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHH---HhhHHHHHHHHHHHHhc
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 558 EQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 558 ~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
||+..|+++++.+.-.....-..-..-...++-.++.+|.-.+++.+|.+.|....
T Consensus 136 GDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 136 GDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.12 E-value=2.9e+02 Score=24.79 Aligned_cols=27 Identities=0% Similarity=-0.148 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVED 502 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 502 (662)
.+.++..|...|+++.|.+.|.-+...
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 444555555555555555555555554
No 441
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.84 E-value=2.1e+02 Score=27.57 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=30.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
++..+.+.+++.+..+.+..+. ....-...++.+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444445555555555555554 334445566666777777777777766554
No 442
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.83 E-value=62 Score=30.84 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCccch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038801 504 RVEVKT-HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYL 548 (662)
Q Consensus 504 ~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 548 (662)
.+.|+. .-|+.-|..-.+.||+++|++++++..+.|+.--..+|-
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 344553 347788999999999999999999999988764444553
No 443
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.65 E-value=2.8e+02 Score=25.50 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=6.1
Q ss_pred hcCCchhHHHHHHH
Q 038801 154 NANTAAPAFALVKC 167 (662)
Q Consensus 154 ~~~~~~~a~~~~~~ 167 (662)
.++.+.+|+..-+.
T Consensus 152 a~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 152 ANGLVTEAFSFQRS 165 (226)
T ss_pred HcCCHHHHHHHHHh
Confidence 33444444444333
No 444
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.31 E-value=2e+02 Score=27.61 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----------cCCHHH
Q 038801 458 FSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----------AGRLED 527 (662)
Q Consensus 458 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 527 (662)
.++|+.|.+.++.|.-.++.-+.-.+.+.=.+.+++.+|+.+..+ .. -|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~-----rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQ-----RFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hh-----hhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 456667777777777777777777777777777777777777664 21 14455555442 355555
Q ss_pred HHHHHH
Q 038801 528 AKRTLR 533 (662)
Q Consensus 528 A~~~~~ 533 (662)
.+++++
T Consensus 337 nmkLLQ 342 (370)
T KOG4567|consen 337 NMKLLQ 342 (370)
T ss_pred HHHHHh
Confidence 555544
No 445
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.44 E-value=2.3e+02 Score=26.05 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=31.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038801 475 SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 475 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 541 (662)
.|...+.++...|. +.. |.....+|| =....|+++.|+++.+-++++|..
T Consensus 66 ~Y~p~V~g~L~~g~---------------~~q-d~Vl~~~mv-W~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 66 KYLPWVEGVLAAGA---------------GYQ-DDVLMTVMV-WRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred chHHHHHHHHHcCC---------------CCC-CCeeeEeee-eeeeccCHHHHHHHHHHHHHcCCC
Confidence 46777777776654 322 322222333 345789999999999998888743
No 446
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.94 E-value=3.6e+02 Score=25.31 Aligned_cols=288 Identities=11% Similarity=0.075 Sum_probs=165.6
Q ss_pred cCCCCCcccHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHhcCChhhHHHHHHHHHcCCC-CC
Q 038801 250 LGVRPNESSFGFLAYLY-ALKGLQEKIVELESLMNEFGFSSQ---MVFYSSLISGYVKLGNLESASRTILLCLGGGN-ME 324 (662)
Q Consensus 250 ~g~~p~~~t~~~li~~~-~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~ 324 (662)
.+-.||+..-|..-.+- .+..++++|..-|++..+..-+.. -.....+|..+.+.|++++..+.|.+++.--. ..
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34567766544332221 244578999999999887632222 34455678899999999999999888876421 11
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCC-CCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC---
Q 038801 325 QSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQK-LEP-SGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC--- 399 (662)
Q Consensus 325 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--- 399 (662)
....+..+.|.++.-.....+.+-..++|+.-.. +.. .+-..--.|-..+...|...+++....+++.++.+.--
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1122334567777777777777777777766432 111 11111112223477888888999999999999877522
Q ss_pred -CCC-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHH-----HHcCCCHHHHHHH-HHHH
Q 038801 400 -SVG-------LGVYVPTLKAYCKEHRTAEATQLVMDISSS-GLQLDVGNYDALIEA-----SITSQDFQSAFSL-FRDM 464 (662)
Q Consensus 400 -~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~-----~~~~g~~~~A~~~-~~~m 464 (662)
..| ..+|..=|..|...++-.+-..+|++.... .--|....... |+- ..+.|++++|-.= |+..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHH
Confidence 222 246777788888888888888888876542 22344433332 332 4567889888654 3333
Q ss_pred H---HcCCCCCccc---HHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 465 R---EARIYDLKGS---YLTIMTGLMENHRPELMAAFLDEVVED-PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 465 ~---~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
. +.| .|...| |..|...+.+.|-- -|+.-..+ +.-.|.+...+.|+.+|- ..+..+-.++++.-..
T Consensus 259 KNYDEsG-spRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 259 KNYDESG-SPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRS 331 (440)
T ss_pred hcccccC-CcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhc
Confidence 3 334 333323 34444445444320 01110001 123455667788888885 4566555555554433
Q ss_pred CCCCCCHHH
Q 038801 538 LQFEPNDQT 546 (662)
Q Consensus 538 ~~~~p~~~~ 546 (662)
.+--|...
T Consensus 332 -~IM~DpFI 339 (440)
T KOG1464|consen 332 -NIMDDPFI 339 (440)
T ss_pred -cccccHHH
Confidence 23444443
No 447
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=36.41 E-value=2.3e+02 Score=22.90 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHH----HHHHccCchHHHHHHHHHHH
Q 038801 544 DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFL----YALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 544 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~----~~~~~~g~~~~A~~~~~~m~ 613 (662)
..++..|-.++...|++++++.--+.....+..-+ .+.-|. ..|...+ .++...|+.++|...|+...
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG--EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG--ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH----TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc--ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 34566777777888888887776666665544221 122232 3333322 35667899999999987753
No 448
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.78 E-value=6.3e+02 Score=27.80 Aligned_cols=84 Identities=10% Similarity=0.048 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----------hhHHHHHHHHHH
Q 038801 346 VKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGL----------GVYVPTLKAYCK 415 (662)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------~~~~~li~~~~~ 415 (662)
-++-...+.+|+.-.+.--.....+...++-.|-...+++...++.+.+.+. ||. ..|...++--.+
T Consensus 179 G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr 255 (1226)
T KOG4279|consen 179 GDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNR 255 (1226)
T ss_pred cHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCC
Confidence 3555666777776322222223344555666777777888888888888764 321 123323333334
Q ss_pred cCCHHHHHHHHHHHHhC
Q 038801 416 EHRTAEATQLVMDISSS 432 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~ 432 (662)
-|+-++|+.+.-.|.++
T Consensus 256 ~GDRakAL~~~l~lve~ 272 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEK 272 (1226)
T ss_pred CccHHHHHHHHHHHHHh
Confidence 57777888777776654
No 449
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.74 E-value=1.9e+02 Score=21.86 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDIC 188 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 188 (662)
-|...-..+...+...|+++.|++.+-.+++.............|+.++
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 4556777788899999999999999999988653333333333343333
No 450
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=35.12 E-value=38 Score=34.30 Aligned_cols=94 Identities=13% Similarity=0.036 Sum_probs=66.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHH-HHHHccCchHHHHHHHHHHHhCCCCCC-HHhHHHHH
Q 038801 551 INGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFL-YALVKGGFFDAVMQVVEKSQEMKVFVD-KWKYKQAF 628 (662)
Q Consensus 551 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~~~ 628 (662)
...+...++++.|+.++.+++ .+.|+...|...= .++.+.+++..|+.=+.++.+..+.-. .+.....+
T Consensus 11 an~~l~~~~fd~avdlysKaI---------~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a 81 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---------ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTA 81 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---------hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHH
Confidence 344566788899999999888 5677765554433 677888999988888888777664322 22333567
Q ss_pred HHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 629 MENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 629 ~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
|...+....|...++....+.|.+.
T Consensus 82 ~m~l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 82 VMALGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHhHHHHHHHHHHHHHhhhcCcCcH
Confidence 7888888888888888888777643
No 451
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.00 E-value=6.6e+02 Score=27.43 Aligned_cols=96 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc-------------ccHHHHHHH
Q 038801 526 EDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK-------------FEHNLVDAF 592 (662)
Q Consensus 526 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------p~~~~~~~l 592 (662)
+-...+-+.+.+.|+..+......++. ...|+...++.++++.. ..+.. ++......+
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~i-------a~~~~~It~~~V~~~Lg~~~~~~i~~L 257 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAI-------AFGSGQLQEAAVRQMLGSVDRSHVFRL 257 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH-------HhcCCCcCHHHHHHHHcCCCHHHHHHH
Q ss_pred HHHHHccCchHHHHHHHHHHHhCCCCCC-HHhHHHHHHHH
Q 038801 593 LYALVKGGFFDAVMQVVEKSQEMKVFVD-KWKYKQAFMEN 631 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~~~~~~ 631 (662)
+.++.. |+...++++++++.+.|..+. +...++..++.
T Consensus 258 ldaL~~-~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~ 296 (618)
T PRK14951 258 IDALAQ-GDGRTVVETADELRLNGLSAASTLEEMAAVLQR 296 (618)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
No 452
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.84 E-value=2.1e+02 Score=24.88 Aligned_cols=59 Identities=7% Similarity=-0.069 Sum_probs=31.3
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 038801 394 MNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQD 453 (662)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 453 (662)
+...|+..+..-. .++..+...++.-.|.++++.+.+.+...+..|-..-+..+...|-
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3445555443322 3444444445555666777777666655555554445555555553
No 453
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=33.70 E-value=2.6e+02 Score=22.64 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=13.9
Q ss_pred cHHhHHHHHHHHHhcCChhhHHH
Q 038801 290 QMVFYSSLISGYVKLGNLESASR 312 (662)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~ 312 (662)
|..++..|-.++...|++++++.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHH
Confidence 34456666677777777766654
No 454
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=33.67 E-value=4e+02 Score=25.70 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 038801 182 GFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSV 249 (662)
Q Consensus 182 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 249 (662)
..++....+.++.....+.+..+.. ...-...+..+... |++..|+++..+..+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~-------------v~~~~~~l~~ll~~-~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT-------------VQQTQSRLQELLEE-GDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 3456666677777777777776644 23334555666666 999999999988765
No 455
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.56 E-value=5.2e+02 Score=26.11 Aligned_cols=61 Identities=11% Similarity=-0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGL--QLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
+.-+...|..+|+++.|.+.|.+..+-.- +-.+..|-.+|..-.-.|+|.....+..+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34445556666666666666665433210 01223344444444455555555555544443
No 456
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.29 E-value=4.3e+02 Score=25.13 Aligned_cols=209 Identities=16% Similarity=0.116 Sum_probs=106.2
Q ss_pred HHHHHHhhCChhHHHHHHHHhhhCCCCCChhh-------HHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHH
Q 038801 74 NLHKSLLTNNTDEAWKSFKSLTANSLFPSKPV-------TNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVH 146 (662)
Q Consensus 74 ~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (662)
+.+...+.++.++|+..|.++...|...+..+ ...+...|.+.|+.....+........|..-..+-...+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44566778999999999999999887765543 34455666666666555555544433333322222222222
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
+++.-+. ..+ .+++.-+++.....+....+.-.-. ....=.-+
T Consensus 89 tLiekf~-------------------~~~----------------dsl~dqi~v~~~~iewA~rEkr~fL--r~~Le~Kl 131 (421)
T COG5159 89 TLIEKFP-------------------YSS----------------DSLEDQIKVLTALIEWADREKRKFL--RLELECKL 131 (421)
T ss_pred HHHHhcC-------------------CCC----------------ccHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 2222111 111 1222222222222221100000000 00111356
Q ss_pred HHHHhccCCChhHHHHHH----HHHHhcCCCCCcccHHHHH-HHHHHcCCHHHHHHHHHHHHhcC----CCCcHHhHHHH
Q 038801 227 LEGCCYGLQSVSDAEKVI----ETMSVLGVRPNESSFGFLA-YLYALKGLQEKIVELESLMNEFG----FSSQMVFYSSL 297 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~a~~~~~~~~~~g----~~~~~~~~~~l 297 (662)
+..+.+. |.+.+|+.+. .++++..-+|+..+...+= ++|-....+.++..-+...+... .+|-...---|
T Consensus 132 i~l~y~~-~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL 210 (421)
T COG5159 132 IYLLYKT-GKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL 210 (421)
T ss_pred HHHHHhc-ccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Confidence 6777887 9999988764 4455556677766655443 34545555555544444333221 34444444445
Q ss_pred HHHH--HhcCChhhHHHHHHHHHcC
Q 038801 298 ISGY--VKLGNLESASRTILLCLGG 320 (662)
Q Consensus 298 i~~~--~~~g~~~~A~~~~~~~~~~ 320 (662)
+++. |...++..|...|.+.++.
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhc
Confidence 5543 4445677788888777765
No 457
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.90 E-value=6.2e+02 Score=26.84 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=15.9
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCCCC
Q 038801 225 AALEGCCYGLQSVSDAEKVIETMSVLGVRPN 255 (662)
Q Consensus 225 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 255 (662)
.++.++.. |+.+.++.++++|...|..|.
T Consensus 251 ~ll~al~~--~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 251 DILEALAA--KAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHc--CCHHHHHHHHHHHHHcCCCHH
Confidence 44444443 566666666666666665443
No 458
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=32.75 E-value=3.5e+02 Score=26.44 Aligned_cols=59 Identities=8% Similarity=-0.036 Sum_probs=32.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH--HHHHHHhcCChHHHHHHHHHHHH
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG--IISACVNLGLSDKAHSILDEMNA 396 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~m~~ 396 (662)
...-+.++.++|+++++++.+.....-.|+.+.|.. +...+...|+..++.+++++..+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 333445566677777766654333333445554443 34445566777777776666655
No 459
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.37 E-value=6.8e+02 Score=27.68 Aligned_cols=32 Identities=16% Similarity=0.016 Sum_probs=22.2
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCC
Q 038801 222 ACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPN 255 (662)
Q Consensus 222 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 255 (662)
....++.++.. ++...++.++++|...|+.+.
T Consensus 248 ~If~LldAL~~--~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 248 YLYELLTGIIN--QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCHH
Confidence 44556666654 788888888888887776543
No 460
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.30 E-value=3.6e+02 Score=23.97 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHH-HHhcc-CC
Q 038801 158 AAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALE-GCCYG-LQ 235 (662)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~-~~ 235 (662)
-++++.+..++.... ...+... ..|++++|.+-++++.+.-.. ++.-...|..+.. +++.. ..
T Consensus 19 REE~l~lsRei~r~s---------~~aI~~~-H~~~~eeA~~~l~~a~~~v~~-----Lk~~l~~~pel~~ag~~~~a~Q 83 (204)
T COG2178 19 REEALKLSREIVRLS---------GEAIFLL-HRGDFEEAEKKLKKASEAVEK-----LKRLLAGFPELYFAGFVTTALQ 83 (204)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHH-HhccHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHhhcchHH
Confidence 356777777776632 2222222 467888888888877653211 2233345555555 34443 12
Q ss_pred ChhHHHHHHHHHHhc
Q 038801 236 SVSDAEKVIETMSVL 250 (662)
Q Consensus 236 ~~~~a~~~~~~m~~~ 250 (662)
.+-+|.-++..+...
T Consensus 84 EyvEA~~l~~~l~~~ 98 (204)
T COG2178 84 EYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHHHHhcC
Confidence 344566666665543
No 461
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.14 E-value=69 Score=17.80 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHhCCC-CCCHHhHHHH
Q 038801 600 GFFDAVMQVVEKSQEMKV-FVDKWKYKQA 627 (662)
Q Consensus 600 g~~~~A~~~~~~m~~~~~-~p~~~~~~~~ 627 (662)
|+.+.|..+++++....+ .++.|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567888889988866543 3556655443
No 462
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.07 E-value=3.9e+02 Score=24.89 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=39.1
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHh---hhhhhhHHHHHHHHhhHHHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENH---KKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~---~~~~~a~~~~~~~~~l~p~~~ 653 (662)
.+-.++...|++-++++-..+..... |+....+......| =+..+|+.=+..+++++|+-+
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHH--PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 34456678899998888888876543 44444443333333 255667777788888888743
No 463
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.97 E-value=33 Score=33.13 Aligned_cols=94 Identities=9% Similarity=-0.146 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHH-HHHHHhh
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQ-AFMENHK 633 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-~~~~~~~ 633 (662)
..|.++.|++.|...+ .+.| ....|.--..++.+.++...|++=++...+.++....-.-+. .+-+..|
T Consensus 126 n~G~~~~ai~~~t~ai---------~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAI---------ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred cCcchhhhhccccccc---------ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence 4588999999998877 3334 346666666788899999999999988877766544333333 3445579
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHhhh
Q 038801 634 KLKVAKLRKRNFKKMEALIAFKNWA 658 (662)
Q Consensus 634 ~~~~a~~~~~~~~~l~p~~~~~~~~ 658 (662)
+++++...++.+.+++-.++...|+
T Consensus 197 ~~e~aa~dl~~a~kld~dE~~~a~l 221 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYDEANSATL 221 (377)
T ss_pred chHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999998887777774
No 464
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.90 E-value=6.2e+02 Score=28.01 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
+......|+.++.. ++...++.+++++. ..|+.+..
T Consensus 245 d~~~If~LldAL~~-~d~~~al~~l~~L~-------~~G~d~~~ 280 (709)
T PRK08691 245 DKQYLYELLTGIIN-QDGAALLAKAQEMA-------ACAVGFDN 280 (709)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHH-------HhCCCHHH
Confidence 34445556666655 88999999999999 77877654
No 465
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.68 E-value=2.3e+02 Score=22.29 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 038801 334 CEVVKGFLQNGNVKGLANLIIEA 356 (662)
Q Consensus 334 ~~li~~~~~~~~~~~a~~~~~~m 356 (662)
..++..|...|+.++|...+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34556667777777777777664
No 466
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.41 E-value=5.9e+02 Score=26.09 Aligned_cols=171 Identities=12% Similarity=0.031 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHH
Q 038801 120 HNLKRAFASVVYVIEKNPK-LLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFL 198 (662)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 198 (662)
++....+......... +. ..+......++... .|+...++.+++.+...+...+.......+....
T Consensus 154 e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~---------- 220 (413)
T PRK13342 154 EDIEQLLKRALEDKER-GLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRA---------- 220 (413)
T ss_pred HHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhh----------
Q ss_pred HHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhc---cCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcC-----
Q 038801 199 KVFEECCRIALDENLDFMKPNIYACNAALEGCCY---GLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKG----- 270 (662)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----- 270 (662)
.....+...+..++.++.+ . ++++.|+..+..|.+.|..|....-..++.++-..|
T Consensus 221 ---------------~~~d~~~~~~~~~isa~~ks~rg-sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~ 284 (413)
T PRK13342 221 ---------------ARYDKDGDEHYDLISALHKSIRG-SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPN 284 (413)
T ss_pred ---------------hccCCCccHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHH
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHc
Q 038801 271 LQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLG 319 (662)
Q Consensus 271 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 319 (662)
...-|...++.....|.+--.......+-.++.+-+-..+...+...++
T Consensus 285 ~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 285 ALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
No 467
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=31.38 E-value=6.2e+02 Score=26.38 Aligned_cols=104 Identities=9% Similarity=0.029 Sum_probs=77.0
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHH---HHccCchHHHHHHHHHH-HhC
Q 038801 541 EPNDQTY-LSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYA---LVKGGFFDAVMQVVEKS-QEM 615 (662)
Q Consensus 541 ~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~A~~~~~~m-~~~ 615 (662)
.|+..|+ +.+++-+...|-+.+|.+++..+.. --.|+...|..++.. ...+| ..-+.++++.| ...
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--------lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--------LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREF 526 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--------CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHh
Confidence 6777654 5677888888999999999998882 224466777777764 23444 78889999888 567
Q ss_pred CCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHh-hHHHHH
Q 038801 616 KVFVDKWKYKQAFMENHKKLKVAKLRKRNFKK-MEALIA 653 (662)
Q Consensus 616 ~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~-l~p~~~ 653 (662)
|-+|+.|...+..=..+|..+.+-.++-++++ |+|..+
T Consensus 527 g~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 527 GADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred CCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhhh
Confidence 98899998887777788998888877755544 666544
No 468
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.30 E-value=2.6e+02 Score=22.05 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
++|..|.+-+...+ .....+--+-+..+.+.|++++| -........||...|-+|-. .+.|-.+++...+.++
T Consensus 23 ~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A----Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 23 QEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA----LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp HHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH----HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH----HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Q ss_pred HHcC
Q 038801 465 REAR 468 (662)
Q Consensus 465 ~~~~ 468 (662)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
No 469
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.15 E-value=4.9e+02 Score=25.66 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHH
Q 038801 526 EDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYA 595 (662)
Q Consensus 526 ~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~ 595 (662)
+++..++.++++. -|+. .-|.++.......|.+++++.+|+++. ..|-+|=...-..++..
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi-------~agAqPieElR~~l~di 184 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAI-------LAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH-------HcCCChHHHHHHHHHHH
Confidence 3455555555543 3443 234445555555555555556665555 45555544444444443
No 470
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=30.91 E-value=6.6e+02 Score=26.55 Aligned_cols=213 Identities=11% Similarity=-0.038 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CChhhHHH
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCS--VGLGVYVP 408 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ 408 (662)
..+.-.+-++...+...+++.+.++... ....|..++..+...|....|...+-+-.+.+-+ -+......
T Consensus 304 ~~~~r~v~~l~~a~~~~e~i~~~~~ea~--------~~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~ 375 (587)
T COG4715 304 VVVDREVPALASAGLQHEAIRLCEREAE--------GPGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQT 375 (587)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHhc--------CcccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHH
Confidence 3556667778888888888888877543 2235677888888888888777665554443311 23345566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA--SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 486 (662)
+.+.+...|++-.|.++-+..-.. .|+...|--|=.+ +...|+.+....+. -.+.|..| +..+..++-..
T Consensus 376 l~el~~~~g~~~~a~~Laq~~F~r--~p~~~sy~~lw~~~~~~gi~~~e~~~a~~--~~~~~~~p----~~~~~~~l~~~ 447 (587)
T COG4715 376 LAELKEEEGRLGFAAELAQEAFFR--TPNGRSYLGLWLAAVYAGIGREEREAALA--YLEVGESP----FAIWPGALPLT 447 (587)
T ss_pred HHHHHHhhcchHHHHHHHHHHccC--CCCccchhhHHHHHHHhhhchHHHHHHHH--HHHhccCc----hhhhhhhhhhc
Confidence 788888889988888887776655 6666666555443 33344443333222 22333333 33333333333
Q ss_pred CCHHH--HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCHH
Q 038801 487 HRPEL--MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV---TAEQYF 561 (662)
Q Consensus 487 ~~~~~--a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~---~~~~~~ 561 (662)
|-... ...+.. ..-..++.++.......++.+-+.+....++.--..++.++++--. .....+
T Consensus 448 g~~~p~d~~~li~------------~~~~~~~~~aiq~~~~~~l~ewl~e~a~~~~s~~~~~~~i~~n~i~~A~~~~~pe 515 (587)
T COG4715 448 GLLWPADRRTLIT------------RLLSLLIEGAIQEKADLELAEWLAELAKEGVSALRYALHIVENKIVNAVPEKYPE 515 (587)
T ss_pred ccCCcchhhhHhh------------hhHHHHHHHHHHhhchHHHHHHHHHHHhhhHHHhhhHHhHHHHHHHhhhhccCch
Confidence 32111 111111 1235566777777777777777777666554433333333333211 123345
Q ss_pred HHHHHHHHHH
Q 038801 562 SVLMMWHEIK 571 (662)
Q Consensus 562 ~a~~~~~~m~ 571 (662)
-|+.++.+.-
T Consensus 516 ia~~~~~r~A 525 (587)
T COG4715 516 IALLIWKRVA 525 (587)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 471
>PRK10941 hypothetical protein; Provisional
Probab=30.55 E-value=1.4e+02 Score=28.39 Aligned_cols=63 Identities=11% Similarity=-0.018 Sum_probs=47.4
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 590 DAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
+.+-.++.+.++++.|..+.+.+....+. |..++--...+...|....|..=++..++.-|.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 55667889999999999999999877665 4455555556666688888888777777766543
No 472
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.32 E-value=3.8e+02 Score=26.39 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhCC-CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 490 ELMAAFLDEVVEDP-RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 490 ~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
+++..+++.+++.- ..+--+..|-+++......|.++.++.+|++.+..|..|=...-..+++.+-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45666666665531 1111235689999999999999999999999999999997777777776655
No 473
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=30.32 E-value=5.7e+02 Score=25.61 Aligned_cols=57 Identities=7% Similarity=-0.033 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038801 489 PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTY 547 (662)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 547 (662)
+-+|..+++....+.+.. ...--.++..|...|-...|.++|..+.-+.+.-|...|
T Consensus 199 l~~Ai~lLE~~l~~s~~n--~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h 255 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHN--YQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH 255 (365)
T ss_pred HHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH
Confidence 456777777776653333 334455778888999999999999887655444444333
No 474
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.94 E-value=6.7e+02 Score=26.55 Aligned_cols=14 Identities=7% Similarity=0.071 Sum_probs=8.5
Q ss_pred CCcHHHHHHHHHHH
Q 038801 191 NSNFVAFLKVFEEC 204 (662)
Q Consensus 191 ~~~~~~a~~~~~~~ 204 (662)
.|++..|...++++
T Consensus 208 ~GdlR~aln~Lekl 221 (504)
T PRK14963 208 DGAMRDAESLLERL 221 (504)
T ss_pred CCCHHHHHHHHHHH
Confidence 46666666666654
No 475
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.23 E-value=6.7e+02 Score=26.07 Aligned_cols=284 Identities=7% Similarity=-0.037 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHH-------------HHHHHHHHHHhcCCCCcHHhHHHHHHH
Q 038801 234 LQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQE-------------KIVELESLMNEFGFSSQMVFYSSLISG 300 (662)
Q Consensus 234 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~-------------~a~~~~~~~~~~g~~~~~~~~~~li~~ 300 (662)
.+.++..++++.++...|.....+.+|.....|.+.|... .+...-+.+......-....+-...-.
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCc----------------
Q 038801 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGI---------------- 364 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------- 364 (662)
|........|+++-..............-...-......+....+.++|+.++.-+.++...+-
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt 189 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKT 189 (696)
T ss_pred eeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhccc
Q ss_pred -------------ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038801 365 -------------VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS 431 (662)
Q Consensus 365 -------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (662)
.+.....-.-+.++....+...+..-.+...... ..+....-.--..+.-.|++.+|.+++...--
T Consensus 190 ~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni 268 (696)
T KOG2471|consen 190 LSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNI 268 (696)
T ss_pred CCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-CCCcHHHHHHHHHHHHhcchHHHHHHHHhccc
Q ss_pred CCCCCChhh--------HHHHHHHHHcCCCHHHHHHHHHHHHH-------cCCCCCc----------ccHHHHHHHHHhc
Q 038801 432 SGLQLDVGN--------YDALIEASITSQDFQSAFSLFRDMRE-------ARIYDLK----------GSYLTIMTGLMEN 486 (662)
Q Consensus 432 ~g~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~~----------~~~~~ll~~~~~~ 486 (662)
..-.-...| ||.|.-.+.+.|.+..+..+|.+..+ .|..|.. .......-.|...
T Consensus 269 ~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~ 348 (696)
T KOG2471|consen 269 HKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS 348 (696)
T ss_pred ccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc
Q ss_pred CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH
Q 038801 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC 520 (662)
Q Consensus 487 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 520 (662)
|++-.|.+.|.+... -...++..|-.|..+|.
T Consensus 349 grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 349 GRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred CCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
No 476
>PRK09857 putative transposase; Provisional
Probab=29.01 E-value=4.1e+02 Score=25.65 Aligned_cols=66 Identities=9% Similarity=0.001 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC
Q 038801 547 YLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 620 (662)
+..++......++.++..++++.+.+ . .........++..-+.+.|.-+++.++..+|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~-------~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAE-------R-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHH-------h-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 44555555566777767777766662 2 222334455666777777877788888888888888755
No 477
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.75 E-value=83 Score=18.43 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHH
Q 038801 193 NFVAFLKVFEECCRIALDENLDFMKPNIYACNA 225 (662)
Q Consensus 193 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (662)
.++.|..+|++... ..|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~---------~hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVL---------VHPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHH---------hCCCchHHHH
Confidence 47889999999876 6788877744
No 478
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.56 E-value=3.6e+02 Score=29.03 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=65.9
Q ss_pred HHHHHHHhhCChhHHHHHHHHhhhC--CCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 038801 73 TNLHKSLLTNNTDEAWKSFKSLTAN--SLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLG 150 (662)
Q Consensus 73 ~~l~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 150 (662)
.++.+|+..|++..+.++++.+... |-+--...+|..|+.+.+.|.+ ....+++.....++.....-|..||..++.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf-~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF-ELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 7889999999999999999998753 3333355789999999999964 344555555555666666667778877776
Q ss_pred HHHhcCCchhHHHHHHHHHh
Q 038801 151 SMRNANTAAPAFALVKCMFK 170 (662)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~ 170 (662)
+-...-.-.-.+.++.+++.
T Consensus 112 ~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred hhcChHhHHhccHHHHHHHH
Confidence 65543333333444444443
No 479
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.52 E-value=2.6e+02 Score=23.58 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 424 QLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 424 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
++...+.+.|++++.. -..+++.+.+.++.-.|.++++++.+.+...+..|...-+..+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3455666777765543 345677777777778899999999988766655565555566655553
No 480
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=28.47 E-value=1.7e+02 Score=24.24 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHH
Q 038801 584 FEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQ 626 (662)
Q Consensus 584 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ 626 (662)
+|.+....+++ +.-.|+++.|+.+.+.+.+.|.. |+.|....
T Consensus 47 qd~Vl~~~mvW-~~D~Gd~~~AL~~a~yAi~~~l~~P~~f~R~~ 89 (132)
T PF05944_consen 47 QDDVLMTVMVW-LFDVGDFDGALDIAEYAIEHGLPMPDRFKRTL 89 (132)
T ss_pred cCchHHhhHhh-hhcccCHHHHHHHHHHHHHcCCCccccccCcc
Confidence 45555555555 45899999999999999999887 77666643
No 481
>PRK11619 lytic murein transglycosylase; Provisional
Probab=28.14 E-value=8.4e+02 Score=26.86 Aligned_cols=120 Identities=5% Similarity=-0.036 Sum_probs=68.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCcccccc--hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 038801 342 QNGNVKGLANLIIEAQKLEPSGIVVDRS--VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRT 419 (662)
Q Consensus 342 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 419 (662)
...+.+.|..++.....- ....++.. +...+.......+...++...++...... .+......-+......+++
T Consensus 253 ar~d~~~A~~~~~~~~~~--~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw 328 (644)
T PRK11619 253 ARQDAENARLMIPSLVRA--QKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDR 328 (644)
T ss_pred HHhCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCH
Confidence 345568888888876431 22222221 12223222223222455555555543322 2444455556666688899
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 420 AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 420 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
+.+...+..|.... .-...-.--+..++...|+.++|...|+++..
T Consensus 329 ~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 329 RGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888875532 22334444566776778999999999888743
No 482
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.01 E-value=1.9e+02 Score=27.11 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTL 532 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~ 532 (662)
..+..++.+.|+.+..+.+-
T Consensus 222 ~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 222 WRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 33444444455544444433
No 483
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.58 E-value=5.3e+02 Score=24.36 Aligned_cols=129 Identities=12% Similarity=-0.015 Sum_probs=56.7
Q ss_pred HHhcCCCCcHHhHHHHHHHHHhcCChh-hHHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 282 MNEFGFSSQMVFYSSLISGYVKLGNLE-SASRTILLCLGGG-NMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKL 359 (662)
Q Consensus 282 ~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 359 (662)
+.+.+.+.|......++..+...+.-+ +-.++..++++-. ......-|+.....+...|.+.|++.+|...|-.
T Consensus 40 ~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~---- 115 (260)
T PF04190_consen 40 YEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL---- 115 (260)
T ss_dssp HHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT----
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh----
Confidence 333455555555555555555443322 1112222222111 1112223677778888888888888888877632
Q ss_pred CCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 360 EPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 360 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
+-.++...+..++.-+...|...+. +...-.+++ .|.-.++...|...++...+.
T Consensus 116 ---~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 116 ---GTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---S-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ---cCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 2223322222233333333332222 222223333 455667788888777666544
No 484
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.03 E-value=4.4e+02 Score=27.78 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCchhHHHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMF 169 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~ 169 (662)
.++.-|.+.+++++|+.++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45666777777777777776664
No 485
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=26.90 E-value=7.7e+02 Score=27.70 Aligned_cols=93 Identities=13% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCHHHHHHHHHHHHh
Q 038801 490 ELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ-------------FEPNDQTYLSLINGYVT 556 (662)
Q Consensus 490 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~~~~~~li~~~~~ 556 (662)
++..+.+.++.+..++..+......+. ....|+...|+.++++....+ -..|...+..++.++..
T Consensus 181 eeIv~~L~~Il~~EgI~id~eAL~lIA--~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~~ 258 (830)
T PRK07003 181 GHIVSHLERILGEERIAFEPQALRLLA--RAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALAA 258 (830)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHHc
Q ss_pred cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHH
Q 038801 557 AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAF 592 (662)
Q Consensus 557 ~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 592 (662)
++..+++.+++++. ..|+.+....-..+
T Consensus 259 -~d~~~~l~~~~~l~-------~~g~~~~~~l~dLl 286 (830)
T PRK07003 259 -GDGPEILAVADEMA-------LRSLSFSTALQDLA 286 (830)
T ss_pred -CCHHHHHHHHHHHH-------HhCCCHHHHHHHHH
No 486
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.87 E-value=5.2e+02 Score=24.00 Aligned_cols=57 Identities=7% Similarity=-0.046 Sum_probs=30.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK-EHRTAEATQLVMDIS 430 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 430 (662)
+...+-..++++++...++++...+...+..-.+.|-.+|-. .|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 455556666666666666666666555555555555555532 344444455544443
No 487
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.65 E-value=4.9e+02 Score=23.69 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=34.9
Q ss_pred chhHHHHHHHHHhcCCCCCc----ccHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 038801 158 AAPAFALVKCMFKNRYFMPF----ELWGGFLVDICRKNSNFVAFLKVFEECCR 206 (662)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 206 (662)
...|+..|.+..+....|.. ..+.-++..+..+.|+.++|.+.|.++..
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 34567777777664433322 34455678888899999999999999875
No 488
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.64 E-value=1.1e+03 Score=27.73 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN---D-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
.-|-..++.+-+.+-.|.+.++-...++. +.+| . .+++++.+-....|.+.+|.+.+-..- ..+--
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---------dserr 1053 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP---------DSERR 1053 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---------cHHHH
Confidence 44777888888888888888888777764 2322 2 477888888888888888866442211 12222
Q ss_pred HHHHHHHHHHHHccCchHH------------HHH-HHHHHHhCCC--CCCHHhHHHHHHHHhhhhhh-hHHHHHHHHhhH
Q 038801 586 HNLVDAFLYALVKGGFFDA------------VMQ-VVEKSQEMKV--FVDKWKYKQAFMENHKKLKV-AKLRKRNFKKME 649 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~------------A~~-~~~~m~~~~~--~p~~~~~~~~~~~~~~~~~~-a~~~~~~~~~l~ 649 (662)
......++-.+..+|.++. ... +++...+..+ +++-+..+.++....+++.. |--+++....++
T Consensus 1054 rdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1054 RDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred HHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhc
Confidence 2456667777777777653 333 3333322222 36666666666665566654 455666666654
Q ss_pred H
Q 038801 650 A 650 (662)
Q Consensus 650 p 650 (662)
.
T Consensus 1134 s 1134 (1480)
T KOG4521|consen 1134 S 1134 (1480)
T ss_pred c
Confidence 3
No 489
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.63 E-value=1.5e+02 Score=30.33 Aligned_cols=102 Identities=10% Similarity=0.121 Sum_probs=50.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC
Q 038801 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTH-DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAE 558 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~ 558 (662)
..+...+.++.|..++.+.++ +.||.. .|.--..++.+.+++..|+.=+...++. .|+. ..|-.=..+|.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 344555566666666666665 344432 2333335666666666666666555543 2333 23333333344444
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHH
Q 038801 559 QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL 596 (662)
Q Consensus 559 ~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~ 596 (662)
.+.+|+..|+... .+.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~---------~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVK---------KLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhh---------hcCcCcHHHHHHHHHH
Confidence 4555555555444 4455554444444333
No 490
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=26.58 E-value=2.2e+02 Score=19.72 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHH
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV-----TAEQYFSVLMM 566 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-----~~~~~~~a~~~ 566 (662)
...|++=+|.++++++-...-.+....|..||.... +.|+.+.|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 346677777777777664322233345555555443 24666666554
No 491
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.45 E-value=2.3e+02 Score=31.61 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038801 483 LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFS 562 (662)
Q Consensus 483 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 562 (662)
+...|+++.|.+.-.++- +..+|..|...-.++|+.+-|+..|++.+. |+-|--.|.-.|+.++
T Consensus 653 aLe~gnle~ale~akkld-------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD-------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC-------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHH
Confidence 344566666665544432 234677777777777777777776665542 2222233444566666
Q ss_pred HHHHHHHH
Q 038801 563 VLMMWHEI 570 (662)
Q Consensus 563 a~~~~~~m 570 (662)
-.++.+.+
T Consensus 717 L~Km~~ia 724 (1202)
T KOG0292|consen 717 LSKMMKIA 724 (1202)
T ss_pred HHHHHHHH
Confidence 55554433
No 492
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.37 E-value=5e+02 Score=23.66 Aligned_cols=33 Identities=6% Similarity=-0.107 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 038801 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLG 251 (662)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g 251 (662)
+..+.-.|+.-+.+..|+.++|.+.|..+...+
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334455566666555688888888888877643
No 493
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=26.30 E-value=3.8e+02 Score=27.42 Aligned_cols=44 Identities=5% Similarity=0.080 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 528 AKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.+++---+...++.|.. -+..+-|..+.+.+++..|-.+-+++.
T Consensus 282 ~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLL 327 (422)
T PF06957_consen 282 NLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLL 327 (422)
T ss_dssp HHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444444555554 366777788888899999999999888
No 494
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.11 E-value=7e+02 Score=25.29 Aligned_cols=52 Identities=19% Similarity=-0.044 Sum_probs=30.7
Q ss_pred cccchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 038801 366 VDRSVGFGIISACVN---LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH 417 (662)
Q Consensus 366 ~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (662)
.+...+..+++++-+ -.+++.|.-++.+|++.|-.|--..-..++-++-.-|
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 344455556666654 3577888888888888875554444444444443333
No 495
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.88 E-value=8.2e+02 Score=25.98 Aligned_cols=37 Identities=8% Similarity=0.173 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 542 PNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 542 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
++......++.++.. ++.+.++.+++++. ..|..|..
T Consensus 244 ~~~~~i~~ll~al~~-~d~~~~l~~~~~l~-------~~g~~~~~ 280 (509)
T PRK14958 244 IEPLLLFDILEALAA-KAGDRLLGCVTRLV-------EQGVDFSN 280 (509)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHH-------HcCCCHHH
Confidence 344444555666554 88999999999999 78887754
No 496
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=25.57 E-value=66 Score=19.37 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=10.1
Q ss_pred HHHHHHccCchHHHHHHH
Q 038801 592 FLYALVKGGFFDAVMQVV 609 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~ 609 (662)
+...+-..|++++|.+++
T Consensus 7 ~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 444555666666666663
No 497
>PRK12798 chemotaxis protein; Reviewed
Probab=25.37 E-value=7.3e+02 Score=25.24 Aligned_cols=197 Identities=12% Similarity=0.105 Sum_probs=114.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-cCCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHHhcCCHHHH
Q 038801 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASI-TSQDFQSAFSLFRDMREA--RIYDLKGSYLTIMTGLMENHRPELM 492 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a 492 (662)
.|+.++|.+.+..+...-..+....|-.|+.+-. ...+..+|+++|+..+=. |--........-+....+.|+.++.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 6888888888888877666667777777777654 446788888888876533 2111112333444556778888877
Q ss_pred HHHHHHHhhCCCCccch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 493 AAFLDEVVEDPRVEVKT-HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHE 569 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~ 569 (662)
..+-.....++.-.|=. ..+..+...+.+.++-..- +.+..+... +.|+. ..|..+...-.-.|+.+-|...-++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77766666654433322 2233344444444432222 223333332 23333 5787777777778988888887777
Q ss_pred HHHhhcccCCCCCcccH--HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC
Q 038801 570 IKRKISTDGQKGIKFEH--NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 570 m~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 620 (662)
...... .+-.+.. ..|... +-.-..++++|.+.+..+......|.
T Consensus 283 A~~L~~----~~~~~~~ra~LY~aa--a~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 283 ALKLAD----PDSADAARARLYRGA--ALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHhcc----CCCcchHHHHHHHHH--HccCcccHHHHHHHHhcCChhhCChh
Confidence 773221 1111111 333332 23356668888888877766665544
No 498
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=25.36 E-value=1.5e+02 Score=23.49 Aligned_cols=46 Identities=20% Similarity=0.057 Sum_probs=26.7
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH
Q 038801 226 ALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQ 272 (662)
Q Consensus 226 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 272 (662)
++..+... +..-.|.++++.+.+.+...+..|....|+.+...|-+
T Consensus 6 Il~~l~~~-~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLES-DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34444444 55566777777776666555666655555666655543
No 499
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.27 E-value=3e+02 Score=20.70 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 038801 254 PNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLC 317 (662)
Q Consensus 254 p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 317 (662)
|+...|..-++.....+.-+. ++|+.....|+..|..+|..+++...-+=..+...+++..+
T Consensus 8 ~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred ChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 500
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.19 E-value=4.9e+02 Score=23.18 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQ--------------FEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
-+++..|-+.-++.+..++++.|.+.. ..+--...|.....|.+.|..+.|+.++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 346667777788888888888887632 2233456677788889999999999988754
Done!