Query 038801
Match_columns 662
No_of_seqs 588 out of 3394
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 05:02:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-38 3.7E-43 344.9 39.9 483 101-618 82-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.5E-38 1.2E-42 340.8 37.0 493 62-596 78-594 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.7E-30 5.7E-35 268.2 22.3 186 405-598 28-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 3.7E-30 1.3E-34 265.6 22.3 188 369-557 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-25 3.8E-30 228.8 44.6 361 229-618 8-371 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 9.2E-26 3.2E-30 229.4 43.0 378 185-600 6-387 (388)
7 2gw1_A Mitochondrial precursor 99.9 4.7E-22 1.6E-26 210.2 39.1 447 143-618 7-481 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.2E-21 7.5E-26 205.1 38.3 453 67-571 5-476 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 5.7E-21 2E-25 198.2 38.1 344 220-611 26-405 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 4.1E-21 1.4E-25 199.3 34.2 303 291-618 26-361 (450)
11 3fp2_A TPR repeat-containing p 99.9 2.1E-20 7.2E-25 198.7 38.5 412 220-652 25-495 (537)
12 3fp2_A TPR repeat-containing p 99.9 5.3E-20 1.8E-24 195.6 36.7 442 142-620 25-496 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.2E-17 4E-22 167.3 36.4 315 257-618 4-338 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.8E-17 6.1E-22 166.0 36.6 317 219-571 2-333 (359)
15 2xm6_A Protein corresponding t 99.8 2.8E-15 9.7E-20 156.7 47.8 389 219-654 38-473 (490)
16 2ooe_A Cleavage stimulation fa 99.8 7E-16 2.4E-20 163.1 42.6 412 217-652 10-496 (530)
17 1fch_A Peroxisomal targeting s 99.8 8E-18 2.7E-22 169.3 26.2 292 342-647 37-358 (368)
18 3hym_B Cell division cycle pro 99.8 5.1E-17 1.8E-21 160.6 31.5 300 253-602 19-321 (330)
19 1xi4_A Clathrin heavy chain; a 99.8 2.8E-14 9.7E-19 155.9 54.2 281 268-608 1088-1377(1630)
20 3hym_B Cell division cycle pro 99.8 1.9E-16 6.6E-21 156.4 33.9 271 215-499 17-296 (330)
21 2ooe_A Cleavage stimulation fa 99.8 2.8E-15 9.5E-20 158.5 43.0 414 140-575 11-494 (530)
22 2xm6_A Protein corresponding t 99.8 3E-14 1E-18 148.9 49.0 344 182-571 43-430 (490)
23 1xi4_A Clathrin heavy chain; a 99.8 5.5E-14 1.9E-18 153.7 51.4 418 68-568 985-1440(1630)
24 4eqf_A PEX5-related protein; a 99.8 3.4E-17 1.1E-21 164.6 24.2 262 370-644 67-352 (365)
25 1fch_A Peroxisomal targeting s 99.8 5.2E-17 1.8E-21 163.3 24.7 298 304-611 38-355 (368)
26 1b89_A Protein (clathrin heavy 99.8 1.6E-16 5.4E-21 155.9 26.4 285 189-531 14-304 (449)
27 3spa_A Mtrpol, DNA-directed RN 99.8 1.1E-18 3.8E-23 184.4 11.0 154 329-487 126-286 (1134)
28 3spa_A Mtrpol, DNA-directed RN 99.8 5.1E-19 1.7E-23 186.9 8.0 166 365-536 124-308 (1134)
29 4eqf_A PEX5-related protein; a 99.7 2.9E-16 9.8E-21 157.8 24.6 271 329-611 64-352 (365)
30 3cv0_A Peroxisome targeting si 99.7 1.1E-15 3.8E-20 150.7 24.5 231 331-571 22-267 (327)
31 4g1t_A Interferon-induced prot 99.7 3.5E-14 1.2E-18 147.9 37.0 256 381-659 188-471 (472)
32 3cv0_A Peroxisome targeting si 99.7 2.4E-15 8.2E-20 148.3 25.9 278 290-612 20-312 (327)
33 4g1t_A Interferon-induced prot 99.7 3.1E-14 1.1E-18 148.4 34.4 397 176-623 49-468 (472)
34 3mkr_A Coatomer subunit epsilo 99.7 1.4E-15 4.7E-20 146.5 21.1 254 337-618 6-267 (291)
35 3mkr_A Coatomer subunit epsilo 99.7 6.9E-15 2.4E-19 141.6 25.7 274 298-609 6-288 (291)
36 1b89_A Protein (clathrin heavy 99.7 8.8E-15 3E-19 143.6 22.6 282 80-425 15-304 (449)
37 3uq3_A Heat shock protein STI1 99.6 2.5E-13 8.7E-18 128.6 23.2 221 373-616 10-237 (258)
38 3uq3_A Heat shock protein STI1 99.6 6.4E-13 2.2E-17 125.8 23.3 226 330-573 5-236 (258)
39 3u4t_A TPR repeat-containing p 99.6 1.1E-12 3.9E-17 125.3 25.0 243 370-618 5-253 (272)
40 2pl2_A Hypothetical conserved 99.6 3.4E-13 1.2E-17 123.8 20.1 198 401-613 3-212 (217)
41 1ouv_A Conserved hypothetical 99.5 6E-12 2E-16 120.3 29.2 186 370-571 8-213 (273)
42 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.3E-13 3.2E-17 126.0 23.4 245 382-642 19-269 (275)
43 3e4b_A ALGK; tetratricopeptide 99.5 2.2E-12 7.6E-17 132.6 27.5 378 227-651 10-424 (452)
44 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.4E-13 1.5E-17 128.3 20.3 247 343-609 18-269 (275)
45 2pl2_A Hypothetical conserved 99.5 7.7E-13 2.6E-17 121.4 20.5 91 440-534 120-210 (217)
46 3u4t_A TPR repeat-containing p 99.5 2.3E-12 7.8E-17 123.1 24.3 242 297-550 9-261 (272)
47 2ho1_A Type 4 fimbrial biogene 99.5 5.2E-12 1.8E-16 119.1 25.3 203 404-618 38-241 (252)
48 1ouv_A Conserved hypothetical 99.5 2.4E-11 8.3E-16 116.1 30.1 228 403-654 6-257 (273)
49 4a1s_A PINS, partner of inscut 99.5 3.1E-13 1.1E-17 137.9 17.6 242 371-615 89-372 (411)
50 2vq2_A PILW, putative fimbrial 99.5 6.3E-12 2.2E-16 116.0 24.4 204 403-617 8-213 (225)
51 2ho1_A Type 4 fimbrial biogene 99.5 8.5E-12 2.9E-16 117.6 25.4 200 331-538 38-238 (252)
52 3sf4_A G-protein-signaling mod 99.5 9.1E-13 3.1E-17 134.1 19.5 283 329-614 8-335 (406)
53 3e4b_A ALGK; tetratricopeptide 99.5 2.9E-11 1E-15 124.2 29.5 378 184-614 9-420 (452)
54 3ro2_A PINS homolog, G-protein 99.5 1.1E-12 3.7E-17 129.6 18.0 277 336-615 11-332 (338)
55 3sf4_A G-protein-signaling mod 99.5 1.7E-12 5.9E-17 132.0 20.0 231 371-604 90-365 (406)
56 2vq2_A PILW, putative fimbrial 99.5 1.7E-11 5.7E-16 113.2 24.4 208 329-545 7-216 (225)
57 2h6f_A Protein farnesyltransfe 99.5 1.1E-11 3.9E-16 123.2 24.5 245 332-597 99-364 (382)
58 4e6h_A MRNA 3'-END-processing 99.5 1.9E-09 6.5E-14 114.5 42.5 437 139-625 63-580 (679)
59 2h6f_A Protein farnesyltransfe 99.4 1.7E-11 5.9E-16 121.9 24.6 251 258-555 99-364 (382)
60 2q7f_A YRRB protein; TPR, prot 99.4 2.4E-12 8.2E-17 120.6 17.3 200 406-618 26-225 (243)
61 2q7f_A YRRB protein; TPR, prot 99.4 4E-12 1.4E-16 119.1 18.1 197 369-571 24-220 (243)
62 4a1s_A PINS, partner of inscut 99.4 2.9E-12 1E-16 130.6 18.5 278 371-652 51-376 (411)
63 4e6h_A MRNA 3'-END-processing 99.4 2.3E-09 8E-14 113.8 40.1 443 158-651 48-573 (679)
64 3ro2_A PINS homolog, G-protein 99.4 1.8E-11 6.1E-16 120.7 20.5 276 372-651 9-335 (338)
65 3ulq_A Response regulator aspa 99.4 2.4E-11 8.1E-16 122.5 21.6 235 409-649 109-369 (383)
66 2ond_A Cleavage stimulation fa 99.4 1.5E-10 5.1E-15 112.6 25.0 219 385-618 33-273 (308)
67 3ulq_A Response regulator aspa 99.4 4.3E-11 1.5E-15 120.6 21.3 231 374-614 109-367 (383)
68 3nf1_A KLC 1, kinesin light ch 99.4 7.4E-12 2.5E-16 122.1 15.1 254 369-651 28-310 (311)
69 2ond_A Cleavage stimulation fa 99.3 7.1E-10 2.4E-14 107.8 27.7 217 308-537 33-269 (308)
70 3nf1_A KLC 1, kinesin light ch 99.3 9.1E-12 3.1E-16 121.5 14.1 249 329-615 26-307 (311)
71 3vtx_A MAMA; tetratricopeptide 99.3 2.5E-10 8.6E-15 101.6 21.0 164 402-571 4-168 (184)
72 4abn_A Tetratricopeptide repea 99.3 1E-10 3.4E-15 121.0 20.2 211 419-645 84-318 (474)
73 3vtx_A MAMA; tetratricopeptide 99.3 1.8E-10 6.1E-15 102.5 19.0 170 437-653 4-175 (184)
74 3q15_A PSP28, response regulat 99.3 3.8E-10 1.3E-14 113.4 23.7 228 374-613 107-363 (378)
75 1hz4_A MALT regulatory protein 99.3 1.5E-09 5.1E-14 108.9 27.3 307 297-618 20-352 (373)
76 4abn_A Tetratricopeptide repea 99.3 1.5E-10 5E-15 119.8 19.7 213 346-568 84-316 (474)
77 3q15_A PSP28, response regulat 99.3 6E-10 2.1E-14 111.9 23.4 237 407-651 105-368 (378)
78 1hz4_A MALT regulatory protein 99.3 1.4E-09 4.8E-14 109.0 26.0 279 333-614 17-321 (373)
79 3edt_B KLC 2, kinesin light ch 99.2 5E-10 1.7E-14 107.2 15.7 208 403-614 43-280 (283)
80 3as5_A MAMA; tetratricopeptide 99.1 3.6E-09 1.2E-13 93.8 18.5 163 405-572 10-172 (186)
81 4i17_A Hypothetical protein; T 99.1 5E-09 1.7E-13 96.7 20.1 192 367-571 6-207 (228)
82 3as5_A MAMA; tetratricopeptide 99.1 7.1E-09 2.4E-13 91.9 19.9 163 293-466 10-172 (186)
83 4gyw_A UDP-N-acetylglucosamine 99.1 1.6E-09 5.6E-14 116.5 17.7 164 437-614 8-173 (723)
84 4i17_A Hypothetical protein; T 99.1 1.5E-08 5E-13 93.6 21.0 198 437-653 6-214 (228)
85 4gyw_A UDP-N-acetylglucosamine 99.1 5.2E-09 1.8E-13 112.6 20.2 164 291-466 9-173 (723)
86 3mv2_B Coatomer subunit epsilo 99.0 1.7E-08 5.8E-13 95.0 19.8 184 457-654 85-288 (310)
87 3edt_B KLC 2, kinesin light ch 99.0 2.5E-09 8.6E-14 102.2 14.9 174 474-648 44-281 (283)
88 1qqe_A Vesicular transport pro 98.9 3E-08 1E-12 95.4 18.1 193 377-571 46-267 (292)
89 1qqe_A Vesicular transport pro 98.9 4.4E-08 1.5E-12 94.1 19.3 201 337-537 44-268 (292)
90 3qky_A Outer membrane assembly 98.9 5.4E-08 1.8E-12 91.9 17.9 182 368-572 15-223 (261)
91 3mv2_B Coatomer subunit epsilo 98.9 4.2E-07 1.4E-11 85.5 22.5 253 338-618 21-285 (310)
92 3qky_A Outer membrane assembly 98.9 7.2E-08 2.4E-12 91.0 17.4 194 328-544 13-228 (261)
93 3urz_A Uncharacterized protein 98.9 7.3E-08 2.5E-12 87.3 16.6 127 479-618 60-189 (208)
94 2uy1_A Cleavage stimulation fa 98.8 1.6E-05 5.5E-10 81.9 34.6 101 158-285 11-118 (493)
95 2fo7_A Synthetic consensus TPR 98.8 1.4E-07 4.6E-12 78.3 15.6 127 406-536 4-130 (136)
96 2fo7_A Synthetic consensus TPR 98.8 2E-07 6.8E-12 77.3 16.3 130 332-467 3-132 (136)
97 2ifu_A Gamma-SNAP; membrane fu 98.8 7.2E-08 2.5E-12 93.4 15.3 232 343-608 4-254 (307)
98 2uy1_A Cleavage stimulation fa 98.8 3.5E-06 1.2E-10 86.8 28.6 205 420-647 196-412 (493)
99 3urz_A Uncharacterized protein 98.8 2.5E-07 8.4E-12 83.8 16.8 121 444-571 60-184 (208)
100 2ifu_A Gamma-SNAP; membrane fu 98.8 1.9E-07 6.5E-12 90.4 17.0 206 381-617 4-225 (307)
101 2yhc_A BAMD, UPF0169 lipoprote 98.8 4E-07 1.4E-11 83.6 18.3 191 402-618 3-216 (225)
102 2qfc_A PLCR protein; TPR, HTH, 98.7 2.3E-06 7.9E-11 82.1 23.8 171 440-613 77-264 (293)
103 2yhc_A BAMD, UPF0169 lipoprote 98.7 6.6E-07 2.3E-11 82.1 19.1 205 329-574 3-214 (225)
104 2r5s_A Uncharacterized protein 98.7 1.2E-07 4E-12 83.4 12.6 57 374-431 12-68 (176)
105 2pzi_A Probable serine/threoni 98.7 1.8E-07 6.1E-12 101.2 16.5 172 379-559 402-583 (681)
106 3rjv_A Putative SEL1 repeat pr 98.7 1.4E-06 4.9E-11 78.9 19.9 173 386-571 4-195 (212)
107 2pzi_A Probable serine/threoni 98.7 2E-07 6.8E-12 100.9 16.4 173 267-453 402-583 (681)
108 3qou_A Protein YBBN; thioredox 98.7 3.1E-07 1.1E-11 87.9 15.7 158 373-534 122-280 (287)
109 2r5s_A Uncharacterized protein 98.7 2.8E-07 9.4E-12 80.9 13.6 156 444-612 12-170 (176)
110 3dra_A Protein farnesyltransfe 98.7 1.2E-05 4.1E-10 76.5 25.4 218 308-537 50-286 (306)
111 3u3w_A Transcriptional activat 98.7 5.5E-06 1.9E-10 79.4 23.4 166 445-613 82-264 (293)
112 3qou_A Protein YBBN; thioredox 98.6 8.2E-07 2.8E-11 84.9 17.0 166 289-465 115-282 (287)
113 3rjv_A Putative SEL1 repeat pr 98.6 1.8E-06 6.3E-11 78.2 18.0 138 421-571 4-156 (212)
114 2vsy_A XCC0866; transferase, g 98.6 6.4E-07 2.2E-11 95.1 16.9 153 452-618 3-160 (568)
115 2vsy_A XCC0866; transferase, g 98.6 8.8E-07 3E-11 94.0 17.8 154 269-433 2-158 (568)
116 3dra_A Protein farnesyltransfe 98.6 6.2E-06 2.1E-10 78.4 21.4 216 385-613 50-285 (306)
117 3u3w_A Transcriptional activat 98.6 5E-06 1.7E-10 79.8 20.6 171 478-650 80-268 (293)
118 4ga2_A E3 SUMO-protein ligase 98.6 3.4E-07 1.1E-11 77.8 10.5 118 342-467 9-129 (150)
119 4ga2_A E3 SUMO-protein ligase 98.6 2.4E-07 8.4E-12 78.7 9.6 140 301-452 7-148 (150)
120 4f3v_A ESX-1 secretion system 98.5 2.5E-07 8.7E-12 85.8 9.9 129 513-651 106-240 (282)
121 3gw4_A Uncharacterized protein 98.5 2.1E-06 7E-11 77.2 15.8 164 414-613 3-174 (203)
122 2qfc_A PLCR protein; TPR, HTH, 98.5 8.1E-06 2.8E-10 78.3 19.6 168 407-574 79-267 (293)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.5 5.2E-06 1.8E-10 75.2 17.3 137 476-618 9-153 (213)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.5 5.8E-06 2E-10 74.9 17.1 143 373-544 11-154 (213)
125 3gyz_A Chaperone protein IPGC; 98.4 8.3E-07 2.8E-11 75.0 9.8 99 509-618 36-136 (151)
126 1a17_A Serine/threonine protei 98.4 4.3E-06 1.5E-10 72.1 14.7 64 510-575 82-148 (166)
127 4gco_A Protein STI-1; structur 98.4 3.1E-06 1.1E-10 69.2 12.6 99 509-618 13-113 (126)
128 3gw4_A Uncharacterized protein 98.3 6.8E-06 2.3E-10 73.7 14.0 86 380-466 4-94 (203)
129 3gyz_A Chaperone protein IPGC; 98.3 3.7E-06 1.3E-10 71.0 11.3 96 472-571 35-131 (151)
130 4f3v_A ESX-1 secretion system 98.3 3.4E-06 1.2E-10 78.3 11.9 187 415-618 18-240 (282)
131 1a17_A Serine/threonine protei 98.3 1.5E-05 5.1E-10 68.6 15.2 131 510-650 14-148 (166)
132 3q7a_A Farnesyltransferase alp 98.3 0.00026 9E-09 68.0 24.7 152 383-537 140-330 (349)
133 2c2l_A CHIP, carboxy terminus 98.3 5.9E-06 2E-10 78.6 13.4 190 370-571 6-197 (281)
134 2c2l_A CHIP, carboxy terminus 98.3 3.8E-06 1.3E-10 79.9 12.0 193 402-614 3-198 (281)
135 2vgx_A Chaperone SYCD; alterna 98.3 4.6E-06 1.6E-10 70.4 11.1 96 404-501 22-117 (148)
136 4gcn_A Protein STI-1; structur 98.3 4.6E-06 1.6E-10 68.3 10.6 110 509-622 8-119 (127)
137 1na0_A Designed protein CTPR3; 98.3 2E-05 7E-10 63.7 14.2 61 405-466 45-105 (125)
138 4gco_A Protein STI-1; structur 98.3 1.7E-05 5.7E-10 64.8 13.2 90 376-467 21-110 (126)
139 2vgx_A Chaperone SYCD; alterna 98.2 6.1E-06 2.1E-10 69.7 10.5 100 508-618 20-121 (148)
140 2e2e_A Formate-dependent nitri 98.2 1.3E-05 4.3E-10 70.2 12.9 120 303-432 22-144 (177)
141 1na0_A Designed protein CTPR3; 98.2 2.9E-05 1E-09 62.8 14.2 95 441-538 12-106 (125)
142 3q7a_A Farnesyltransferase alp 98.2 0.00047 1.6E-08 66.3 24.3 224 340-572 64-330 (349)
143 2lni_A Stress-induced-phosphop 98.2 2.2E-05 7.7E-10 64.5 13.6 90 375-466 23-112 (133)
144 3sz7_A HSC70 cochaperone (SGT) 98.2 1.7E-05 6E-10 68.3 13.3 100 508-618 10-111 (164)
145 1elr_A TPR2A-domain of HOP; HO 98.2 1.4E-05 4.8E-10 65.4 12.1 112 510-624 5-117 (131)
146 4b4t_Q 26S proteasome regulato 98.2 6.5E-05 2.2E-09 76.5 19.6 170 441-613 58-243 (434)
147 4b4t_Q 26S proteasome regulato 98.2 0.00032 1.1E-08 71.3 24.6 170 406-575 58-247 (434)
148 2vyi_A SGTA protein; chaperone 98.2 1.7E-05 6E-10 64.8 12.4 99 509-617 12-111 (131)
149 2lni_A Stress-induced-phosphop 98.2 3.4E-05 1.2E-09 63.3 13.9 99 401-501 14-112 (133)
150 2e2e_A Formate-dependent nitri 98.2 1.5E-05 5E-10 69.8 12.1 117 382-501 24-143 (177)
151 2vyi_A SGTA protein; chaperone 98.2 2.7E-05 9.3E-10 63.6 13.0 25 441-465 83-107 (131)
152 1p5q_A FKBP52, FK506-binding p 98.2 3.2E-05 1.1E-09 75.6 15.3 128 509-647 147-293 (336)
153 3upv_A Heat shock protein STI1 98.2 2.2E-05 7.4E-10 64.1 11.8 96 510-616 5-102 (126)
154 1p5q_A FKBP52, FK506-binding p 98.2 2.7E-05 9.1E-10 76.1 14.5 132 403-573 147-294 (336)
155 1elw_A TPR1-domain of HOP; HOP 98.1 4.5E-05 1.5E-09 60.9 13.4 100 509-618 4-104 (118)
156 2kck_A TPR repeat; tetratricop 98.1 2.5E-05 8.5E-10 61.8 11.6 100 509-618 6-109 (112)
157 2xcb_A PCRH, regulatory protei 98.1 2.3E-05 7.8E-10 65.6 11.6 98 509-617 18-117 (142)
158 3sz7_A HSC70 cochaperone (SGT) 98.1 3.5E-05 1.2E-09 66.3 12.3 96 370-467 13-108 (164)
159 4gcn_A Protein STI-1; structur 98.1 4.7E-05 1.6E-09 62.2 12.1 110 405-548 10-120 (127)
160 3dss_A Geranylgeranyl transfer 98.1 0.0021 7.2E-08 61.4 25.0 192 152-361 39-269 (331)
161 3ro3_A PINS homolog, G-protein 98.1 3.5E-05 1.2E-09 65.8 11.6 102 510-614 50-157 (164)
162 2fbn_A 70 kDa peptidylprolyl i 98.1 5.2E-06 1.8E-10 74.3 6.5 93 510-612 89-183 (198)
163 2hr2_A Hypothetical protein; a 98.0 2E-05 6.7E-10 65.9 9.3 109 545-653 12-136 (159)
164 2xcb_A PCRH, regulatory protei 98.0 6.8E-05 2.3E-09 62.6 12.9 89 375-465 25-113 (142)
165 2fbn_A 70 kDa peptidylprolyl i 98.0 7.1E-06 2.4E-10 73.4 7.2 125 331-458 39-176 (198)
166 1hxi_A PEX5, peroxisome target 98.0 2.3E-05 7.8E-10 63.4 9.6 97 547-652 20-118 (121)
167 3dss_A Geranylgeranyl transfer 98.0 0.001 3.6E-08 63.5 22.4 198 384-617 90-306 (331)
168 3q49_B STIP1 homology and U bo 98.0 4.7E-05 1.6E-09 63.0 11.7 99 508-616 8-107 (137)
169 3q49_B STIP1 homology and U bo 98.0 0.00015 5.2E-09 59.8 13.9 98 474-574 10-107 (137)
170 1hxi_A PEX5, peroxisome target 98.0 4.1E-05 1.4E-09 61.9 9.9 96 511-617 19-116 (121)
171 2kck_A TPR repeat; tetratricop 98.0 0.00011 3.9E-09 57.8 12.2 97 370-468 8-107 (112)
172 3upv_A Heat shock protein STI1 98.0 0.0002 6.8E-09 58.2 13.8 95 332-431 6-100 (126)
173 2xev_A YBGF; tetratricopeptide 97.9 9.3E-05 3.2E-09 60.4 11.8 96 512-618 5-108 (129)
174 1elw_A TPR1-domain of HOP; HOP 97.9 0.00024 8.1E-09 56.6 14.0 95 441-538 7-101 (118)
175 3n71_A Histone lysine methyltr 97.9 8E-05 2.7E-09 76.0 13.4 105 509-614 351-463 (490)
176 2dba_A Smooth muscle cell asso 97.9 0.00015 5E-09 60.8 13.1 100 508-618 27-131 (148)
177 3ro3_A PINS homolog, G-protein 97.9 7.1E-05 2.4E-09 63.8 10.8 139 404-573 10-158 (164)
178 1elr_A TPR2A-domain of HOP; HO 97.9 0.0001 3.5E-09 60.1 11.0 114 405-552 6-120 (131)
179 2dba_A Smooth muscle cell asso 97.8 0.00014 4.7E-09 61.0 11.4 101 543-652 27-132 (148)
180 3k9i_A BH0479 protein; putativ 97.8 2.2E-05 7.5E-10 63.1 5.5 60 405-465 29-88 (117)
181 1wao_1 Serine/threonine protei 97.8 4.3E-05 1.5E-09 78.6 8.8 86 482-571 15-101 (477)
182 3k9i_A BH0479 protein; putativ 97.8 1.8E-05 6.2E-10 63.6 4.6 85 522-615 3-90 (117)
183 2if4_A ATFKBP42; FKBP-like, al 97.8 3.5E-05 1.2E-09 75.3 7.4 131 512-653 182-333 (338)
184 2xev_A YBGF; tetratricopeptide 97.8 0.00043 1.5E-08 56.3 12.9 25 442-466 43-67 (129)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00038 1.3E-08 71.2 14.9 120 510-640 269-406 (457)
186 3rkv_A Putative peptidylprolyl 97.7 0.0002 6.7E-09 61.4 10.3 100 510-618 12-129 (162)
187 3rkv_A Putative peptidylprolyl 97.7 0.00012 4.1E-09 62.8 8.7 110 544-653 11-131 (162)
188 2hr2_A Hypothetical protein; a 97.7 0.00038 1.3E-08 58.1 11.1 101 511-615 13-131 (159)
189 1ihg_A Cyclophilin 40; ppiase 97.7 0.00029 1E-08 69.6 12.2 119 512-639 226-361 (370)
190 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0006 2.1E-08 69.6 14.1 143 437-612 267-412 (457)
191 3n71_A Histone lysine methyltr 97.6 0.00071 2.4E-08 69.0 14.3 129 518-647 318-463 (490)
192 1wao_1 Serine/threonine protei 97.6 0.00014 4.7E-09 74.8 9.2 89 377-467 15-103 (477)
193 2l6j_A TPR repeat-containing p 97.5 9.8E-05 3.4E-09 58.3 4.7 93 508-611 3-103 (111)
194 1ihg_A Cyclophilin 40; ppiase 97.5 0.00091 3.1E-08 66.0 12.5 115 330-468 223-337 (370)
195 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00035 1.2E-08 68.1 8.7 61 440-501 232-292 (338)
196 1dce_A Protein (RAB geranylger 97.4 0.0033 1.1E-07 65.8 15.7 169 455-636 46-243 (567)
197 1dce_A Protein (RAB geranylger 97.2 0.012 4.2E-07 61.4 18.5 170 307-488 45-241 (567)
198 2kat_A Uncharacterized protein 97.2 0.0048 1.6E-07 48.8 11.8 76 528-614 4-81 (115)
199 1klx_A Cysteine rich protein B 97.1 0.014 4.6E-07 48.1 14.0 110 345-468 10-127 (138)
200 2kat_A Uncharacterized protein 97.1 0.0023 7.8E-08 50.7 8.7 78 387-466 4-81 (115)
201 1zu2_A Mitochondrial import re 97.0 0.0012 4.2E-08 54.9 6.6 88 520-618 13-123 (158)
202 2l6j_A TPR repeat-containing p 97.0 0.0023 7.8E-08 50.1 8.0 67 543-618 3-70 (111)
203 1klx_A Cysteine rich protein B 97.0 0.011 3.8E-07 48.6 12.3 84 481-571 33-124 (138)
204 3qww_A SET and MYND domain-con 97.0 0.0028 9.4E-08 63.5 10.0 92 521-614 310-410 (433)
205 1na3_A Designed protein CTPR2; 96.9 0.0055 1.9E-07 45.7 9.3 62 509-571 9-70 (91)
206 3ma5_A Tetratricopeptide repea 96.9 0.0025 8.5E-08 49.0 7.2 64 402-466 6-69 (100)
207 3ly7_A Transcriptional activat 96.9 0.012 4E-07 56.6 13.1 74 506-590 274-347 (372)
208 1na3_A Designed protein CTPR2; 96.9 0.0073 2.5E-07 45.0 9.7 62 405-467 11-72 (91)
209 3qwp_A SET and MYND domain-con 96.9 0.005 1.7E-07 61.7 10.8 97 516-613 294-398 (429)
210 1zu2_A Mitochondrial import re 96.8 0.0021 7.1E-08 53.5 6.3 61 489-553 62-133 (158)
211 3qwp_A SET and MYND domain-con 96.8 0.012 4.2E-07 58.9 13.1 68 509-576 329-403 (429)
212 3ma5_A Tetratricopeptide repea 96.8 0.0048 1.6E-07 47.4 8.0 68 585-652 6-74 (100)
213 3qww_A SET and MYND domain-con 96.6 0.0091 3.1E-07 59.8 10.8 67 509-575 340-413 (433)
214 2kc7_A BFR218_protein; tetratr 96.5 0.0067 2.3E-07 46.3 7.0 86 550-651 6-93 (99)
215 1wy6_A Hypothetical protein ST 96.2 0.33 1.1E-05 38.3 14.5 141 448-618 17-157 (172)
216 3mkq_A Coatomer beta'-subunit; 96.1 0.22 7.5E-06 54.9 19.5 149 235-429 613-762 (814)
217 3ly7_A Transcriptional activat 96.1 0.063 2.2E-06 51.5 12.3 143 508-657 193-348 (372)
218 3mkq_A Coatomer beta'-subunit; 96.0 0.2 6.7E-06 55.3 18.2 101 334-464 633-733 (814)
219 3mkq_B Coatomer subunit alpha; 95.9 0.67 2.3E-05 39.1 16.8 129 412-571 14-142 (177)
220 1pc2_A Mitochondria fission pr 95.8 0.021 7.2E-07 46.9 6.7 85 560-652 14-104 (152)
221 2v5f_A Prolyl 4-hydroxylase su 95.8 0.15 5.2E-06 39.1 11.5 75 543-618 4-78 (104)
222 1pc2_A Mitochondria fission pr 95.7 0.12 4.2E-06 42.3 11.0 86 524-618 13-103 (152)
223 3mkq_B Coatomer subunit alpha; 95.6 0.48 1.6E-05 39.9 14.3 129 299-464 13-141 (177)
224 1wy6_A Hypothetical protein ST 95.5 0.69 2.3E-05 36.5 14.7 137 381-540 20-156 (172)
225 3bee_A Putative YFRE protein; 95.4 0.064 2.2E-06 40.2 7.8 72 542-623 4-79 (93)
226 2kc7_A BFR218_protein; tetratr 95.1 0.11 3.8E-06 39.1 8.6 58 409-468 6-65 (99)
227 3bee_A Putative YFRE protein; 95.1 0.18 6.1E-06 37.7 9.3 62 508-571 5-70 (93)
228 3u64_A Protein TP_0956; tetrat 94.8 0.18 6.1E-06 46.3 10.1 105 491-612 181-295 (301)
229 2v5f_A Prolyl 4-hydroxylase su 94.2 0.2 6.8E-06 38.4 7.9 63 509-571 5-73 (104)
230 3u64_A Protein TP_0956; tetrat 94.1 0.38 1.3E-05 44.2 10.7 85 525-620 179-276 (301)
231 1nzn_A CGI-135 protein, fissio 93.8 0.84 2.9E-05 35.9 10.6 90 520-618 12-106 (126)
232 4h7y_A Dual specificity protei 93.6 0.24 8.3E-06 40.0 7.3 103 510-621 14-129 (161)
233 3lvg_A Clathrin heavy chain 1; 93.2 0.00064 2.2E-08 66.4 -9.5 238 67-351 82-325 (624)
234 4b4t_P 26S proteasome regulato 93.0 4 0.00014 40.9 17.2 95 407-501 141-246 (445)
235 1qsa_A Protein (soluble lytic 92.8 11 0.00036 39.5 26.2 117 488-614 229-347 (618)
236 1nzn_A CGI-135 protein, fissio 92.8 0.32 1.1E-05 38.3 6.8 87 558-652 15-107 (126)
237 4h7y_A Dual specificity protei 92.4 2.6 9E-05 34.1 11.7 102 329-435 12-126 (161)
238 4ady_A RPN2, 26S proteasome re 92.4 15 0.00051 40.1 28.9 156 446-614 498-657 (963)
239 3lvg_A Clathrin heavy chain 1; 92.2 0.00057 1.9E-08 66.8 -11.4 232 292-568 55-286 (624)
240 4fhn_B Nucleoporin NUP120; pro 92.1 3 0.0001 47.6 16.7 85 404-490 900-988 (1139)
241 2ff4_A Probable regulatory pro 91.6 2.1 7.2E-05 42.0 12.9 68 407-475 175-247 (388)
242 4b4t_P 26S proteasome regulato 91.0 14 0.00047 36.9 18.9 192 343-537 29-246 (445)
243 4fhn_B Nucleoporin NUP120; pro 91.0 6.7 0.00023 44.8 18.0 130 511-649 901-1051(1139)
244 2ff4_A Probable regulatory pro 90.9 1.2 4E-05 43.8 10.3 78 511-591 173-250 (388)
245 4ady_A RPN2, 26S proteasome re 89.6 27 0.00092 38.2 39.8 451 68-547 145-664 (963)
246 3ffl_A Anaphase-promoting comp 88.6 1.2 4.1E-05 36.9 6.8 101 516-616 27-152 (167)
247 4gns_B Protein CSD3, chitin bi 87.9 3.6 0.00012 43.9 11.8 54 551-613 344-398 (754)
248 3lpz_A GET4 (YOR164C homolog); 87.2 20 0.00069 33.7 21.4 138 70-233 37-180 (336)
249 4gns_B Protein CSD3, chitin bi 86.8 6.4 0.00022 42.0 12.9 126 223-356 251-397 (754)
250 3o48_A Mitochondria fission 1 86.3 2.4 8.2E-05 33.5 7.0 72 581-652 35-111 (134)
251 3txn_A 26S proteasome regulato 85.5 28 0.00095 33.8 23.1 94 261-356 104-207 (394)
252 2wpv_A GET4, UPF0363 protein Y 84.0 28 0.00094 32.5 21.5 166 333-536 36-215 (312)
253 1v54_E Cytochrome C oxidase po 84.0 6.7 0.00023 29.2 7.8 60 385-445 27-86 (109)
254 1y8m_A FIS1; mitochondria, unk 82.4 17 0.00059 29.1 10.4 68 138-206 35-105 (144)
255 3o48_A Mitochondria fission 1 81.7 18 0.0006 28.6 11.3 71 541-618 37-110 (134)
256 3lpz_A GET4 (YOR164C homolog); 81.3 36 0.0012 32.0 21.6 81 437-537 135-215 (336)
257 1y8m_A FIS1; mitochondria, unk 80.9 20 0.00068 28.8 11.9 71 541-618 36-109 (144)
258 2wpv_A GET4, UPF0363 protein Y 80.9 36 0.0012 31.7 21.1 91 112-202 62-158 (312)
259 1wdy_A 2-5A-dependent ribonucl 79.7 26 0.00087 31.9 13.1 207 336-567 8-239 (285)
260 4b4t_R RPN7, 26S proteasome re 79.1 23 0.0008 35.0 13.0 99 511-613 133-235 (429)
261 1zbp_A Hypothetical protein VP 77.6 7.7 0.00026 35.1 7.8 52 519-571 7-58 (273)
262 2y69_E Cytochrome C oxidase su 77.1 13 0.00045 29.3 7.8 59 386-445 71-129 (152)
263 3ffl_A Anaphase-promoting comp 75.5 15 0.00052 30.3 8.4 25 294-318 66-90 (167)
264 1v54_E Cytochrome C oxidase po 73.7 25 0.00086 26.1 10.4 61 559-626 25-86 (109)
265 3txn_A 26S proteasome regulato 71.7 76 0.0026 30.8 23.5 169 373-545 104-290 (394)
266 2p58_C Putative type III secre 71.0 23 0.0008 26.2 7.4 87 155-259 20-106 (116)
267 2y69_E Cytochrome C oxidase su 69.5 40 0.0014 26.7 10.4 60 559-625 68-128 (152)
268 1zbp_A Hypothetical protein VP 69.3 12 0.00041 33.8 7.0 119 149-285 4-129 (273)
269 4b4t_R RPN7, 26S proteasome re 67.5 32 0.0011 34.0 10.7 61 405-465 133-195 (429)
270 1wdy_A 2-5A-dependent ribonucl 67.4 29 0.00099 31.5 10.0 237 373-643 7-274 (285)
271 2uwj_G Type III export protein 65.7 22 0.00077 26.2 6.4 87 155-259 19-105 (115)
272 2p58_C Putative type III secre 62.6 31 0.0011 25.6 6.6 78 383-468 22-99 (116)
273 2wvi_A Mitotic checkpoint seri 61.5 47 0.0016 27.4 8.6 48 159-206 77-124 (164)
274 2uwj_G Type III export protein 60.4 29 0.001 25.6 6.2 78 383-468 21-98 (115)
275 3esl_A Checkpoint serine/threo 59.6 55 0.0019 28.1 8.9 58 522-586 92-150 (202)
276 3bu8_A Telomeric repeat-bindin 59.2 25 0.00085 30.2 6.6 69 560-634 88-162 (235)
277 3esl_A Checkpoint serine/threo 58.9 74 0.0025 27.3 9.6 51 156-206 93-143 (202)
278 3eiq_C Programmed cell death p 58.7 1.3E+02 0.0043 28.7 12.5 65 476-542 220-286 (358)
279 3eiq_C Programmed cell death p 53.7 1.5E+02 0.0053 28.1 15.0 65 546-618 219-285 (358)
280 3mv2_A Coatomer subunit alpha; 53.0 1.5E+02 0.005 27.7 11.9 49 523-571 184-234 (325)
281 2d2s_A Exocyst complex compone 50.7 83 0.0028 27.9 9.1 88 227-318 25-118 (235)
282 1qsa_A Protein (soluble lytic 49.7 2.4E+02 0.0083 29.3 33.3 205 337-567 222-436 (618)
283 2nsz_A Programmed cell death p 48.2 75 0.0026 25.0 7.6 69 333-405 10-80 (129)
284 3eu9_A Huntingtin-interacting 48.0 71 0.0024 27.8 8.7 49 516-568 181-231 (240)
285 2zu6_B Programmed cell death p 47.6 1.6E+02 0.0055 27.3 10.9 24 371-394 6-29 (307)
286 4a1g_A Mitotic checkpoint seri 47.0 1.1E+02 0.0039 24.7 9.4 50 563-619 84-134 (152)
287 1k1a_A B-cell lymphoma 3-encod 45.9 1.5E+02 0.0051 25.7 13.8 81 228-313 14-98 (241)
288 3kea_A K1L; tropism, ANK repea 45.6 1.1E+02 0.0039 27.7 9.9 40 235-278 42-81 (285)
289 4g8k_A 2-5A-dependent ribonucl 44.8 2E+02 0.0067 26.8 12.2 141 482-643 174-322 (337)
290 2zu6_B Programmed cell death p 43.7 1.1E+02 0.0037 28.5 9.1 64 476-541 169-234 (307)
291 2d2s_A Exocyst complex compone 43.4 1.4E+02 0.0049 26.3 9.5 23 336-358 24-46 (235)
292 4aez_C MAD3, mitotic spindle c 43.2 1.3E+02 0.0046 26.2 8.9 49 158-206 130-178 (223)
293 4a1g_A Mitotic checkpoint seri 41.6 1.4E+02 0.0048 24.2 9.5 49 158-206 81-129 (152)
294 2ion_A PDCD4, programmed cell 40.7 63 0.0022 26.3 6.3 70 332-405 11-82 (152)
295 3ljn_A Hypothetical protein; a 39.8 1.6E+02 0.0056 27.7 10.4 218 329-569 17-266 (364)
296 2wvi_A Mitotic checkpoint seri 39.7 1.6E+02 0.0054 24.3 9.6 55 526-587 77-132 (164)
297 3eu9_A Huntingtin-interacting 38.2 56 0.0019 28.5 6.4 18 626-643 214-231 (240)
298 3jxi_A Vanilloid receptor-rela 37.4 81 0.0028 28.1 7.4 21 266-286 12-32 (260)
299 3b7b_A Euchromatic histone-lys 37.2 73 0.0025 27.8 6.9 25 374-402 14-38 (237)
300 2r9g_A AAA ATPase, central reg 36.8 2E+02 0.0068 24.6 8.7 53 235-288 28-85 (204)
301 4gq2_M Nucleoporin NUP120; bet 36.6 2.4E+02 0.0082 31.3 12.1 49 404-452 898-950 (950)
302 3ltm_A Alpha-REP4; protein eng 35.6 2E+02 0.0069 24.3 18.9 154 254-431 31-184 (211)
303 1k1a_A B-cell lymphoma 3-encod 34.9 1.3E+02 0.0045 26.1 8.3 86 409-499 12-102 (241)
304 2r9g_A AAA ATPase, central reg 34.8 2.1E+02 0.0073 24.4 9.1 35 417-452 28-62 (204)
305 2nsz_A Programmed cell death p 34.3 1.7E+02 0.0057 22.9 8.1 63 476-540 10-74 (129)
306 3b7b_A Euchromatic histone-lys 34.0 1.9E+02 0.0065 24.9 9.2 72 230-311 18-94 (237)
307 3bu8_A Telomeric repeat-bindin 32.4 2.5E+02 0.0084 24.3 10.3 23 183-205 119-141 (235)
308 3e3v_A Regulatory protein RECX 32.1 2.2E+02 0.0076 23.7 8.6 50 385-435 50-99 (177)
309 1n11_A Ankyrin; clathrin, BAND 32.0 3.6E+02 0.012 26.1 12.1 332 225-620 16-371 (437)
310 4b4t_S RPN3, 26S proteasome re 32.0 1.1E+02 0.0038 30.7 7.5 61 220-285 231-299 (523)
311 4b4t_O 26S proteasome regulato 31.6 2.7E+02 0.0093 26.9 10.3 24 513-536 131-154 (393)
312 3bge_A Predicted ATPase; struc 31.6 2E+02 0.0067 24.5 7.8 32 417-448 21-52 (201)
313 4aez_C MAD3, mitotic spindle c 31.0 91 0.0031 27.2 5.9 51 386-436 132-183 (223)
314 3mkr_B Coatomer subunit alpha; 30.8 1.7E+02 0.0059 27.1 8.0 45 527-571 179-225 (320)
315 3ltm_A Alpha-REP4; protein eng 30.2 2.5E+02 0.0085 23.7 17.9 171 217-415 30-200 (211)
316 1ug3_A EIF4GI, eukaryotic prot 30.1 2.9E+02 0.01 25.9 10.1 59 183-252 16-77 (339)
317 2ion_A PDCD4, programmed cell 29.9 1.5E+02 0.0051 24.1 6.8 62 477-540 13-76 (152)
318 3ctd_A Putative ATPase, AAA fa 29.3 2.8E+02 0.0094 23.9 8.4 33 417-449 49-81 (213)
319 2fe3_A Peroxide operon regulat 28.8 1.3E+02 0.0046 24.0 6.4 59 393-452 12-70 (145)
320 4b4t_S RPN3, 26S proteasome re 28.7 2.7E+02 0.0091 28.1 9.6 24 291-314 231-254 (523)
321 1bpo_A Protein (clathrin); cla 28.2 4.5E+02 0.015 26.0 12.4 93 175-277 358-450 (494)
322 3t8k_A Uncharacterized protein 28.0 2.6E+02 0.0089 23.2 9.6 16 387-402 93-108 (186)
323 3mv2_A Coatomer subunit alpha; 27.9 3.7E+02 0.013 25.0 11.2 42 579-620 198-241 (325)
324 3bqo_A Telomeric repeat-bindin 27.6 69 0.0024 27.2 4.3 45 590-634 121-165 (211)
325 3c1d_A Protein ORAA, regulator 27.1 2.5E+02 0.0087 22.8 10.2 52 384-437 46-97 (159)
326 2rfa_A Transient receptor pote 27.0 2.9E+02 0.0099 23.6 9.1 192 261-463 5-219 (232)
327 2xig_A Ferric uptake regulatio 26.7 1.3E+02 0.0046 24.2 6.1 59 393-452 17-75 (150)
328 2ijq_A Hypothetical protein; s 26.0 2.7E+02 0.0093 22.8 10.5 63 512-575 36-106 (161)
329 3jxi_A Vanilloid receptor-rela 25.9 47 0.0016 29.7 3.6 17 596-612 232-248 (260)
330 3ljn_A Hypothetical protein; a 25.5 2.5E+02 0.0086 26.4 9.0 38 249-286 74-111 (364)
331 1zl8_A LIN-7; heterodimer, alp 25.0 1E+02 0.0035 19.3 3.6 46 156-204 7-52 (53)
332 3l6a_A Eukaryotic translation 24.9 4.5E+02 0.016 25.0 12.9 213 182-415 16-245 (364)
333 2fu4_A Ferric uptake regulatio 24.8 1.7E+02 0.0058 20.3 5.8 61 534-602 7-68 (83)
334 3hra_A Ankyrin repeat family p 24.6 1.4E+02 0.0048 24.9 6.3 187 410-610 9-199 (201)
335 2ijq_A Hypothetical protein; s 24.5 2.8E+02 0.0097 22.7 7.5 52 415-466 44-103 (161)
336 4g8k_A 2-5A-dependent ribonucl 24.5 4.2E+02 0.014 24.4 16.7 148 377-544 174-329 (337)
337 3kea_A K1L; tropism, ANK repea 23.6 4E+02 0.014 23.9 12.4 181 339-545 37-224 (285)
338 3eyy_A Putative iron uptake re 23.6 1.3E+02 0.0043 24.2 5.3 58 393-452 9-66 (145)
339 2keb_A DNA polymerase subunit 23.3 2.2E+02 0.0077 20.9 6.3 62 527-592 27-88 (101)
340 1mzb_A Ferric uptake regulatio 23.3 1.4E+02 0.0048 23.5 5.5 58 394-452 9-67 (136)
341 1n11_A Ankyrin; clathrin, BAND 23.3 3.1E+02 0.01 26.6 9.4 292 296-643 16-332 (437)
342 2fe3_A Peroxide operon regulat 23.2 2.1E+02 0.0072 22.8 6.6 15 557-571 34-48 (145)
343 2fu4_A Ferric uptake regulatio 23.2 1.5E+02 0.005 20.6 5.1 11 422-432 36-46 (83)
344 1wty_A Hypothetical protein TT 22.9 2.6E+02 0.0087 21.4 7.0 76 193-283 3-79 (119)
345 2b7e_A PRE-mRNA processing pro 22.0 1.2E+02 0.0042 19.9 3.8 30 237-266 2-31 (59)
346 3twr_A Tankyrase-2; ankyrin re 22.0 2.9E+02 0.01 21.9 7.7 14 340-353 15-28 (165)
347 1wgl_A TOLL-interacting protei 21.9 1.5E+02 0.005 19.5 4.3 36 218-256 23-58 (59)
348 2xig_A Ferric uptake regulatio 21.5 2.6E+02 0.0089 22.4 6.9 61 427-488 16-76 (150)
349 4ets_A Ferric uptake regulatio 21.3 2.3E+02 0.0079 23.1 6.6 47 124-171 15-61 (162)
350 1bpo_A Protein (clathrin); cla 21.2 6.1E+02 0.021 25.1 10.9 127 468-612 356-482 (494)
351 2w57_A Ferric uptake regulatio 20.9 1.6E+02 0.0053 23.8 5.4 58 394-452 8-66 (150)
352 3bge_A Predicted ATPase; struc 20.8 3.9E+02 0.013 22.7 8.9 43 374-416 10-55 (201)
353 2etb_A Transient receptor pote 20.2 4.3E+02 0.015 23.0 9.0 24 626-649 225-248 (256)
354 3aji_A 26S proteasome non-ATPa 20.0 4E+02 0.014 22.6 12.2 187 334-543 7-199 (231)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-38 Score=344.85 Aligned_cols=483 Identities=11% Similarity=-0.013 Sum_probs=376.3
Q ss_pred CChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccH
Q 038801 101 PSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELW 180 (662)
Q Consensus 101 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 180 (662)
++...|+.++..+.+.|+.+.+...++.+. .. .|+..++..++.+|.+.|++++|+.+|+.+... +.+...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 152 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVL---DI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSAC 152 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHH---hh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhH
Confidence 456667777777777777666666655543 11 234466667777777777777777777766442 344445
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHHhh--------hhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 038801 181 GGFLVDICRKNSNFVAFLKVFEECCRIA--------LDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGV 252 (662)
Q Consensus 181 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~ 252 (662)
...++.+|.+.|++++|+++|+++.... ......+...+..+|+.++.+|.+. |++++|+++|++|.+.+
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~- 230 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL-SNFDRAKECYKEALMVD- 230 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-
Confidence 6667777777777777777777421100 0000113355789999999999998 99999999999998764
Q ss_pred CCC-cccHHHHHHHHHHcCCHH--HHHHH-HHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCC
Q 038801 253 RPN-ESSFGFLAYLYALKGLQE--KIVEL-ESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDF 328 (662)
Q Consensus 253 ~p~-~~t~~~li~~~~~~g~~~--~a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 328 (662)
|+ ...+..+...+...+..+ .+..+ +..+...+......+|+.++..|.+.|++++|.++|.++++. .+
T Consensus 231 -p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~ 303 (597)
T 2xpi_A 231 -AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL------EK 303 (597)
T ss_dssp -TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG------GG
T ss_pred -chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC------Cc
Confidence 44 333444433333222221 12222 455555555566777888899999999999999998766553 25
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 408 (662)
+..+|+.++.+|.+.|++++|.++|+++.+..+ .+..++..++.++.+.|++++|.++++++.+.. +.+..+++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 378 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDP----YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLA 378 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 899999999999999999999999999987432 367788999999999999999999999998754 667899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
++.+|.+.|++++|.++|+++.+.. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|+
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCC
Confidence 9999999999999999999998753 2367899999999999999999999999999875 5677899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHH
Q 038801 489 PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPN--DQTYLSLINGYVTAEQYFS 562 (662)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~~~~~ 562 (662)
+++|.++|+++.+..+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++
T Consensus 457 ~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQ--YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999987522 35678999999999999999999999999876 66887 7899999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 563 VLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 563 a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
|+++++++. +.+ ..+..+|..+..+|.+.|++++|.++++++.+.++.
T Consensus 535 A~~~~~~~~-------~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 535 AIDALNQGL-------LLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHH-------HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHH-------HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 999999998 222 236789999999999999999999999999887655
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-38 Score=340.85 Aligned_cols=493 Identities=10% Similarity=-0.069 Sum_probs=405.9
Q ss_pred ccccchhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCC
Q 038801 62 TLTQDNITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLD 141 (662)
Q Consensus 62 ~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (662)
..+.++...|+.++..+.+.|++++|+.+|+++... .|+..++..+..++.+.|+.+.+...++.+. ..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~ 149 (597)
T 2xpi_A 78 TDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKED------LYNRS 149 (597)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC------GGGTC
T ss_pred cchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHh------ccccc
Confidence 344567889999999999999999999999999853 4788899999999999999888877776532 23578
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHhcC--------------CCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 038801 142 FQTVHTLLGSMRNANTAAPAFALVKCMFKNR--------------YFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRI 207 (662)
Q Consensus 142 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 207 (662)
..+++.++.+|.+.|++++|+.+|+++.... ..+.....+..++..|.+.|++++|+++|+++.+.
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999532221 11234567888999999999999999999999873
Q ss_pred hhhhhcCCCCc-cHHHHHHHHHHHhccCCChhHHH--HH-HHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038801 208 ALDENLDFMKP-NIYACNAALEGCCYGLQSVSDAE--KV-IETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMN 283 (662)
Q Consensus 208 ~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~--~~-~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 283 (662)
.| +...+..+...+... +..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+.+.
T Consensus 230 ---------~p~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 230 ---------DAKCYEAFDQLVSNHLLT-ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp ---------CTTCHHHHHHHHHTTCSC-HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred ---------CchhhHHHHHHHHhhccc-chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 33 445555555544432 3222221 11 5566655556666677888889999999999999999998
Q ss_pred hcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 038801 284 EFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSG 363 (662)
Q Consensus 284 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 363 (662)
+. +++..+++.++.+|.+.|++++|.++|.++++..+. +..+|+.++.++.+.|++++|.++++++.+.
T Consensus 300 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 368 (597)
T 2xpi_A 300 GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-----NLDVYPLHLASLHESGEKNKLYLISNDLVDR---- 368 (597)
T ss_dssp TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----
T ss_pred cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----
Confidence 76 588999999999999999999999999998875422 6788999999999999999999999999763
Q ss_pred cccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 038801 364 IVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA 443 (662)
Q Consensus 364 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 443 (662)
.+.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|+.
T Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 446 (597)
T 2xpi_A 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLF 446 (597)
T ss_dssp CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHH
Confidence 23456788889999999999999999999998864 4568899999999999999999999999999874 337899999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCccc--hhhHHHHHHH
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP---RVEVK--THDWNSIIHA 518 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~~~~li~~ 518 (662)
++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 9999999999999999999999875 5677899999999999999999999999987642 45676 6799999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHH
Q 038801 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYAL 596 (662)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~ 596 (662)
|.+.|++++|.++|+++.+.+ ..+..+|..+..+|.+.|++++|.+.|+++. .+.|+. ..+..+..+|
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l---------~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESL---------AISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH---------hcCCCChHHHHHHHHHH
Confidence 999999999999999999864 3377899999999999999999999999999 345543 5555555443
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.7e-30 Score=268.21 Aligned_cols=186 Identities=13% Similarity=0.221 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC---------HHHHHHHHHHHHHcCCCCCccc
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQD---------FQSAFSLFRDMREARIYDLKGS 475 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~~~~~~~~~ 475 (662)
+++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3444455555555555555555555555555555555555555544332 3455555555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
|++||.+|++.|++++|.++|++|.+. |+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 555555555555555555555555553 5555556666666666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHc
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVK 598 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 598 (662)
+.|+.++|.+++++|+ +.|..|+..||+.++..+..
T Consensus 187 ~~g~~d~A~~ll~~Mr-------~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-------DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHH-------HHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHH-------HhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666 55566666666665555543
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.7e-30 Score=265.62 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=165.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC---------HHHHHHHHHHHHhCCCCCChh
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR---------TAEATQLVMDISSSGLQLDVG 439 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~~~~ 439 (662)
..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45677788888888888888888888888888888888888888876654 678888888888888888888
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHH
Q 038801 440 NYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAF 519 (662)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 519 (662)
||++||.+|++.|++++|.++|++|.+.|+.|+..||+.+|.+|++.|+.++|.++|++|.+. |+.||..+|++||.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Confidence 899999999888888899999988888888888888999999999989999999999888886 8999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTA 557 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 557 (662)
++.|+.++|.++|++|.+.|+.|+..||++++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998864
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.1e-25 Score=228.76 Aligned_cols=361 Identities=11% Similarity=0.027 Sum_probs=308.4
Q ss_pred HHhccCCChhHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCh
Q 038801 229 GCCYGLQSVSDAEKVIETMSVLGVRPNE-SSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNL 307 (662)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 307 (662)
.+.+. |++++|++.++.+.+. .|+. ..+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|++
T Consensus 8 ~~~~~-g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQA-GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHC-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 44555 9999999999998775 4554 445556677889999999999999988864 56788999999999999999
Q ss_pred hhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc-chHHHHHHHHHhcCChHH
Q 038801 308 ESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR-SVGFGIISACVNLGLSDK 386 (662)
Q Consensus 308 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~ 386 (662)
++|...|.+++...+. +..+|..+..++.+.|++++|.+.|+++.+.. |+. ..+..+...+...|++++
T Consensus 84 ~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-----PDLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-----TTCTHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHcCcc-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHccCHHH
Confidence 9999999998875422 56789999999999999999999999997643 443 345567788888999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
|.+.|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.+. .+...|..+...+...|++++|...|++..+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 231 (388)
T 1w3b_A 154 AKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALS 231 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998864 45678999999999999999999999999998742 2567889999999999999999999999988
Q ss_pred cCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 038801 467 ARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQT 546 (662)
Q Consensus 467 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 546 (662)
.. |.+..++..+...+...|++++|...++++.+..+. +..+|..+..+|.+.|++++|.+.|+++.+.. ..+..+
T Consensus 232 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 307 (388)
T 1w3b_A 232 LS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADS 307 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHH
Confidence 75 556788999999999999999999999999885332 35679999999999999999999999999863 446789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 547 YLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
|..+...+...|++++|+..++++. ...|+ ..++..+..++.+.|++++|.+.++++.+..+.
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKAL---------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT---------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999998 33454 578999999999999999999999999876543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=9.2e-26 Score=229.40 Aligned_cols=378 Identities=12% Similarity=0.027 Sum_probs=319.5
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc-HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038801 185 VDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN-IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLA 263 (662)
Q Consensus 185 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li 263 (662)
...+.+.|++++|.+.++++.+. .|+ ...+..+...+... |++++|...++...+.. +.+..+|..+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~---------~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~a~~~~-p~~~~~~~~lg 74 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ---------EPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQN-PLLAEAYSNLG 74 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 34455789999999999998773 444 44555555566665 99999999999987754 55677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc
Q 038801 264 YLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN 343 (662)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 343 (662)
.++.+.|++++|...|+.+.+.. +.+..+|..+..++.+.|++++|.+.|.+.++..+. +...+..+...+...
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-----LYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHc
Confidence 99999999999999999998864 334678999999999999999999999998876432 556788888999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 038801 344 GNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEAT 423 (662)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 423 (662)
|++++|.+.|+++.+..+. +..++..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|.
T Consensus 149 g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPN----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred cCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999864322 45678889999999999999999999999875 556788999999999999999999
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 038801 424 QLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED 502 (662)
Q Consensus 424 ~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 502 (662)
..|++..+. .| +..++..+..+|.+.|++++|...|+++.+.+ +.+..++..+...+.+.|++++|...++++.+.
T Consensus 224 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 224 AAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999876 44 57889999999999999999999999999875 555678999999999999999999999999885
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCC
Q 038801 503 PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKG 581 (662)
Q Consensus 503 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 581 (662)
. ..+..+|+.+...+.+.|++++|.+.++++.+. .| +..++..+..++.+.|++++|+..|+++. .
T Consensus 301 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~---------~ 367 (388)
T 1w3b_A 301 C--PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---------R 367 (388)
T ss_dssp C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH---------T
T ss_pred C--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------h
Confidence 2 345678999999999999999999999999975 45 46799999999999999999999999999 3
Q ss_pred Cccc-HHHHHHHHHHHHccC
Q 038801 582 IKFE-HNLVDAFLYALVKGG 600 (662)
Q Consensus 582 ~~p~-~~~~~~l~~~~~~~g 600 (662)
+.|+ ...|..+...+.+.|
T Consensus 368 ~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 368 ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCTTCHHHHHHHHHHHHHTC
T ss_pred hCCCCHHHHHhHHHHHHHcc
Confidence 4564 467777777666555
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.7e-22 Score=210.19 Aligned_cols=447 Identities=9% Similarity=-0.056 Sum_probs=317.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHH
Q 038801 143 QTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYA 222 (662)
Q Consensus 143 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (662)
..+......+.+.|++++|+..|+++.+.. | +...+..+...+.+.|++++|+..|+++.+. .+.+...
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 75 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALEL--------KPDYSKV 75 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSCCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--------ChHHHHH
Confidence 456667788888899999999999988865 3 3555666788888889999999999988773 2345567
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHH
Q 038801 223 CNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYV 302 (662)
Q Consensus 223 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 302 (662)
|..+...+... |++++|+..|+++...+ +++......++..+........+.+.+..+...+..|+......-.....
T Consensus 76 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (514)
T 2gw1_A 76 LLRRASANEGL-GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD 153 (514)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh
Confidence 88888888887 99999999999888765 34555555555555554444444444433333322222211111111111
Q ss_pred hcCChhhHHHHHHHHHcCCCCC------CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----h--CCCCc--
Q 038801 303 KLGNLESASRTILLCLGGGNME------QSDFSKETYCEVVKGFLQ---NGNVKGLANLIIEAQK-----L--EPSGI-- 364 (662)
Q Consensus 303 ~~g~~~~A~~~~~~~~~~~~~~------~~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~--~~~~~-- 364 (662)
..........+ ...+...... ....+...+......+.. .|++++|..+|+++.. + .+...
T Consensus 154 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 154 KQENLPSVTSM-ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ---CCCCHHHH-HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hccCCchhHHH-HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 11111111111 1111111000 001124555555555554 8999999999999876 3 22111
Q ss_pred -ccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 038801 365 -VVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA 443 (662)
Q Consensus 365 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 443 (662)
+.+...+..+...+...|++++|...++++.+.. |+...+..+..+|...|++++|...++++.+.. ..+...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHH
Confidence 2334566778889999999999999999998875 338889999999999999999999999998864 236778899
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG 523 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 523 (662)
+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++++.+..+. +...|..+...|...|
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE--APEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--CSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHCC
Confidence 9999999999999999999999875 456678899999999999999999999998875332 4567899999999999
Q ss_pred CHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHH
Q 038801 524 RLEDAKRTLRRMIFLQF-EPN----DQTYLSLINGYVT---AEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLY 594 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~ 594 (662)
++++|...++++.+... .++ ...|..+...+.. .|++++|...++++.+ ..| +..++..+..
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~~~~la~ 457 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK---------LDPRSEQAKIGLAQ 457 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH---------HCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH---------hCcccHHHHHHHHH
Confidence 99999999999987421 111 3488999999999 9999999999999983 234 4578888999
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
++.+.|++++|.+.++++.+.++.
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHhcCHHHHHHHHHHHHHhccc
Confidence 999999999999999999887765
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.2e-21 Score=205.05 Aligned_cols=453 Identities=10% Similarity=-0.020 Sum_probs=280.8
Q ss_pred hhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHH
Q 038801 67 NITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVH 146 (662)
Q Consensus 67 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (662)
....+......+...|++++|+..|+++.+.. |++..+..+..++...|+.+.+...++... ...+ .+..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p--~~~~~~~ 77 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKAL---ELKP--DYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCS--CCHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh---ccCh--HHHHHHH
Confidence 34556667777888888888888888887654 777777777777777777666665555443 2222 3445666
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
.+..++...|++++|+..|+.+.+.+ |........++..+.+......+.+.+..+... +..|+...++.-
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~ 148 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-------TATPTELSTQPA 148 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhccCChh
Confidence 67777777777777777777766644 222222222222222222222222222222110 011111111111
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh---
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK--- 303 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--- 303 (662)
....... ........+...+......++. .....+.+...+..+...+..
T Consensus 149 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 201 (514)
T 2gw1_A 149 KERKDKQ-ENLPSVTSMASFFGIFKPELTF--------------------------ANYDESNEADKELMNGLSNLYKRS 201 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCC--------------------------SSCCSSCHHHHHHHHHHHHHSSCC
T ss_pred hHHHhhc-cCCchhHHHHHHHhhcCHHHHH--------------------------HHhcCCcHHHHHHHHHHHHHHhhh
Confidence 1100000 1111111111111000000000 000001223334444444443
Q ss_pred cCChhhHHHHHHHHHc-----CCCCCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHH
Q 038801 304 LGNLESASRTILLCLG-----GGNMEQS----DFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGI 374 (662)
Q Consensus 304 ~g~~~~A~~~~~~~~~-----~~~~~~~----~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~l 374 (662)
.|++++|...|.+.++ ....... ..+...|..+...+...|++++|.+.|+++....+ +...+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-----~~~~~~~l 276 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-----RVNSYIYM 276 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC-----CHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-----cHHHHHHH
Confidence 6778888887777766 2110110 11456777788888888888888888888876432 25566777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|++..+.... +...+..+...+...|++
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCH
Confidence 888888888888888888888764 456678888888888899999999999888876422 567788888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc----hhhHHHHHHHHHh---cCCHHH
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK----THDWNSIIHAFCK---AGRLED 527 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~ 527 (662)
++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+..+-.++ ...|..+...|.. .|++++
T Consensus 355 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 355 DDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 99999998888764 455677888888889999999999988887664222222 3378888999999 999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 528 AKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
|...|+++.+.. ..+..++..+...+...|++++|...|+++.
T Consensus 434 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 434 ATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999988753 2355788889999999999999999999998
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.7e-21 Score=198.21 Aligned_cols=344 Identities=13% Similarity=0.053 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 220 IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
...|..+...+... |++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 26 ~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 26 VEKHLELGKKLLAA-GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 33444555555554 55555555555554432 2234444455555555555555555555555443 223444555555
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHH
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSK---ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIIS 376 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~ 376 (662)
+|.+.|++++|.+.|.+++...+. +. ..+..++..+... .+..+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~--------------------------~~~~~a~ 151 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-----ENEEKEAQSQLIKSDEMQ--------------------------RLRSQAL 151 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-----HHHHHHHHHHHHHHHHHH--------------------------HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHHHHH--------------------------HHHHHHH
Confidence 555555555555555444443211 22 3333333331100 1112344
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
.+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|..+|+++.+.. ..+..+|..+..+|...|++++
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4667788888888888877754 4567778888888888888888888888877652 2356778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCcccHHHH------------HHHHHhcCCHHHHHHHHHHHhhCCCCccc--hhhHHHHHHHHHhc
Q 038801 457 AFSLFRDMREARIYDLKGSYLTI------------MTGLMENHRPELMAAFLDEVVEDPRVEVK--THDWNSIIHAFCKA 522 (662)
Q Consensus 457 A~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~ 522 (662)
|...|+++.+.. +.+...+..+ ...+...|++++|..+|+++.+..+..+. ...|..+..++.+.
T Consensus 230 A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 230 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 888888887653 3333344443 67888889999999999888774333222 34788888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHH-----
Q 038801 523 GRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYA----- 595 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~----- 595 (662)
|++++|...++++.+. .| +...|..+..+|...|++++|...++++. .+.|+. ..+..+..+
T Consensus 309 g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ---------EHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------TTSSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------HhCcchHHHHHHHHHHHHHhh
Confidence 9999999999998875 44 56889999999999999999999999998 355554 455555422
Q ss_pred -------HHccC-----chHHHHHHHHH
Q 038801 596 -------LVKGG-----FFDAVMQVVEK 611 (662)
Q Consensus 596 -------~~~~g-----~~~~A~~~~~~ 611 (662)
|...| +.+++.+.+++
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 33333 55667777776
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.1e-21 Score=199.33 Aligned_cols=303 Identities=14% Similarity=0.088 Sum_probs=216.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccch
Q 038801 291 MVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSV 370 (662)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (662)
...+..+...|.+.|++++|..+|.+++...+. +...|..+..++...|++++|++.|+++.+..+. +...
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~ 96 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD----FTAA 96 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----cHHH
Confidence 444455555555555555555555444443211 3445555555555555555555555555442211 2334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---hhHHH------------HHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNACGCSVGL---GVYVP------------TLKAYCKEHRTAEATQLVMDISSSGLQ 435 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (662)
+..+..++...|++++|.+.|+++.+.. +.+. ..+.. +...+.+.|++++|...|+++.+.. .
T Consensus 97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 174 (450)
T 2y4t_A 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-V 174 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 4445555555555555555555555432 1222 33333 3455889999999999999998863 2
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHH
Q 038801 436 LDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSI 515 (662)
Q Consensus 436 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 515 (662)
.+...+..+..+|.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|...|+++.+..+- +...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~~ 251 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD--HKRCFAHY 251 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--hHHHHHHH
Confidence 377889999999999999999999999999874 566789999999999999999999999999874222 23344444
Q ss_pred ------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccC
Q 038801 516 ------------IHAFCKAGRLEDAKRTLRRMIFLQFEPN-----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDG 578 (662)
Q Consensus 516 ------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 578 (662)
...|.+.|++++|...|+++.+. .|+ ...|..+..++.+.|++++|+..++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------ 323 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ------ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence 78999999999999999999984 565 34788899999999999999999999982
Q ss_pred CCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 579 QKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 579 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+.| +..++..+..+|.+.|++++|.+.++++.+..+.
T Consensus 324 ---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 324 ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp ---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred ---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 334 5688999999999999999999999999886655
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.1e-20 Score=198.74 Aligned_cols=412 Identities=10% Similarity=0.020 Sum_probs=309.8
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 038801 220 IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLIS 299 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 299 (662)
...|..+-..+... |++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++.+.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTA-KNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHT-TCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34566677778887 99999999999998764 4467788888999999999999999999999875 456888999999
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CcccccchH-----
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPS---GIVVDRSVG----- 371 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~~----- 371 (662)
++...|++++|...| +.+.. ++......+..+...+...+|...++++....+. ...|+....
T Consensus 102 ~~~~~g~~~~A~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDL-SVLSL--------NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHH-HHHC-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH-HHHhc--------CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 999999999999997 46554 2222233345566666677888888887442111 111111111
Q ss_pred ---------------------HHHHHHHH------------hcCChHHHHHHHHHHHHCCCCCC-------hhhHHHHHH
Q 038801 372 ---------------------FGIISACV------------NLGLSDKAHSILDEMNACGCSVG-------LGVYVPTLK 411 (662)
Q Consensus 372 ---------------------~~ll~~~~------------~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~li~ 411 (662)
..+..++. ..|++++|..+++++.+.. +.+ ..++..+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGI 251 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHH
Confidence 11112221 1247889999999998764 223 235777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 491 (662)
.+...|++++|...|++..+. .|+...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 889999999999999999987 5668889999999999999999999999999876 5567789999999999999999
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
|...+++..+..+. +...|..+...|...|++++|.+.++++.+.. ..+...+..+...+...|++++|++.++++.
T Consensus 329 A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE--NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHCTT--CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999875332 35678999999999999999999999999863 2345789999999999999999999999998
Q ss_pred HhhcccCCCCCcccHHHHHHHHHHHHcc----------CchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHH
Q 038801 572 RKISTDGQKGIKFEHNLVDAFLYALVKG----------GFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKL 640 (662)
Q Consensus 572 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~ 640 (662)
+..+... ........+..+..++.+. |++++|...++++.+..+. ++.+..+...+...|+.+.|..
T Consensus 406 ~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 406 RLEEVQE--KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHCS--SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCcch--hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 5544221 1112223344555667777 9999999999999877654 5566666777788899999999
Q ss_pred HHHHHHhhHHHH
Q 038801 641 RKRNFKKMEALI 652 (662)
Q Consensus 641 ~~~~~~~l~p~~ 652 (662)
.+++++++.|..
T Consensus 484 ~~~~al~~~~~~ 495 (537)
T 3fp2_A 484 LFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHC--C
T ss_pred HHHHHHHhCCCc
Confidence 999999998763
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=5.3e-20 Score=195.63 Aligned_cols=442 Identities=8% Similarity=-0.032 Sum_probs=321.6
Q ss_pred hHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHH
Q 038801 142 FQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIY 221 (662)
Q Consensus 142 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 221 (662)
...+..+...+.+.|++++|+..|+++.+.. |.....+..+...+.+.|++++|++.|+++.++ .+.+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 94 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--------KPDHSK 94 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCchHH
Confidence 3567788889999999999999999999854 666777888889999999999999999999874 234567
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCcHHhHHHHHH
Q 038801 222 ACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG--FSSQMVFYSSLIS 299 (662)
Q Consensus 222 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~ 299 (662)
.|..+...+... |++++|+..|+.+. ..|+.. ...+..+...+....|...++.+.... ..+........+.
T Consensus 95 ~~~~la~~~~~~-g~~~~A~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 95 ALLRRASANESL-GNFTDAMFDLSVLS---LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHh---cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 888888888887 99999999997442 233322 223445556666788888888886541 0111112233444
Q ss_pred HHHhcCChhhHHHHHHHHHcCCCCCCCCCCHH-HHHHHHHHHH--------hcCCHHHHHHHHHHHHHhCCCCccc---c
Q 038801 300 GYVKLGNLESASRTILLCLGGGNMEQSDFSKE-TYCEVVKGFL--------QNGNVKGLANLIIEAQKLEPSGIVV---D 367 (662)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~-~~~~li~~~~--------~~~~~~~a~~~~~~m~~~~~~~~~~---~ 367 (662)
.+....+.+.+...+.+. ....+... ....+...+. ..|++++|..+|+++.+..+..... -
T Consensus 169 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~ 242 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTS------SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242 (537)
T ss_dssp HHHHTSCHHHHHHTSCCC------CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhc------cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHH
Confidence 555666666665443111 11222222 2222222222 2258899999999987532221100 0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038801 368 RSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA 447 (662)
Q Consensus 368 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 447 (662)
..++..+...+...|++++|...++++.+.. |+...+..+...|...|++++|...|+++.+... .+..+|..+...
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHH
Confidence 2245566778889999999999999999864 5588899999999999999999999999988642 267889999999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHH
Q 038801 448 SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (662)
+...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++++.+..+ .+...|..+...|...|++++
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP--TLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999875 55667899999999999999999999999987532 245678999999999999999
Q ss_pred HHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHH
Q 038801 528 AKRTLRRMIFLQ-----FEPNDQTYLSLINGYVTA----------EQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDA 591 (662)
Q Consensus 528 A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~ 591 (662)
|.+.|+++.+.. .......+..+...+... |++++|+..++++.+ ..| +...+..
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---------~~p~~~~~~~~ 467 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE---------LDPRSEQAKIG 467 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH---------HCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH---------hCCCCHHHHHH
Confidence 999999988632 111223345556677777 999999999999993 234 4578899
Q ss_pred HHHHHHccCchHHHHHHHHHHHhCCCCCC
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 620 (662)
+..++.+.|++++|.+.++++.+..+...
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999999999988776543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.2e-17 Score=167.31 Aligned_cols=315 Identities=12% Similarity=0.072 Sum_probs=189.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHH
Q 038801 257 SSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEV 336 (662)
Q Consensus 257 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~l 336 (662)
..+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|.+.++..+. +...|..+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l 77 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-----FTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----cchHHHHH
Confidence 345556666777777777777777776654 344666777777777777777777777766654322 45667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCccc----ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVV----DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKA 412 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 412 (662)
...+...|++++|.+.|+++.+. .| +...+..+... .. ...+..+...
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~ 129 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALD 129 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHH
Confidence 77777777777777777776542 22 12222222100 00 0011112344
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHH
Q 038801 413 YCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM 492 (662)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 492 (662)
+...|++++|...++++.+.. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554432 1134445555555555555555555555555443 33444555555555555555555
Q ss_pred HHHHHHHhhCCCCccchh----------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhc
Q 038801 493 AAFLDEVVEDPRVEVKTH----------DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-----QTYLSLINGYVTA 557 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~ 557 (662)
...+++..+..+-.+... ....+...+.+.|++++|...++++.+. .|+. ..+..+..++...
T Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 208 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHc
Confidence 555555544322111111 1223366688889999999999988875 3443 2355577788888
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 558 EQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 558 ~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
|++++|+..++++.+ ..| +..++..+..++.+.|++++|.+.++++.+..+.
T Consensus 286 ~~~~~A~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQ---------MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp TCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred cCHHHHHHHHHHHHH---------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999998882 234 4578888888899999999999999998776654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=1.8e-17 Score=165.98 Aligned_cols=317 Identities=13% Similarity=0.047 Sum_probs=211.6
Q ss_pred cHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 038801 219 NIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLI 298 (662)
Q Consensus 219 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 298 (662)
|...+..+-..+... |++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA-GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 456677778888887 99999999999998764 3456778888899999999999999999999875 34578899999
Q ss_pred HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH
Q 038801 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC 378 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~ 378 (662)
..|...|++++|...|.+.++..+.. ..+...+..+..... ...+..+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~--------------------------~~~~~~~a~~~ 130 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSE--QEEKEAESQLVKADE--------------------------MQRLRSQALDA 130 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHHHH--------------------------HHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcc--cChHHHHHHHHHHHH--------------------------HHHHHHHHHHH
Confidence 99999999999999998888763200 003444444421100 00122233444
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF 458 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 458 (662)
...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. ..+...+..+...+...|++++|.
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555555443 3344555555555666666666666666555542 124455555555666666666666
Q ss_pred HHHHHHHHcCCCCCcccHH------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCccch--hhHHHHHHHHHhcCC
Q 038801 459 SLFRDMREARIYDLKGSYL------------TIMTGLMENHRPELMAAFLDEVVEDPRVEVKT--HDWNSIIHAFCKAGR 524 (662)
Q Consensus 459 ~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~ 524 (662)
..|++..+.. +.+...+. .+...+.+.|++++|...++++.+..+..+.. ..+..+..+|...|+
T Consensus 209 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 209 SEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC
Confidence 6666555543 22222221 22455777777777777777776643322221 235567788888999
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 525 LEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+++|.+.+++..+. .| +...|..+...+...|++++|.+.|+++.
T Consensus 288 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 288 PVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999888875 44 56788888888888999999999999888
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=2.8e-15 Score=156.74 Aligned_cols=389 Identities=9% Similarity=-0.022 Sum_probs=306.0
Q ss_pred cHHHHHHHHHHHhc----cCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCc
Q 038801 219 NIYACNAALEGCCY----GLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL----KGLQEKIVELESLMNEFGFSSQ 290 (662)
Q Consensus 219 ~~~~~~~ll~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 290 (662)
+...+..+-..|.. . +++++|+..|++..+.| +...+..|-..|.. .++.++|.+.|+...+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETT-KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 55555555555655 5 89999999999998765 45677777788888 899999999999998875 5
Q ss_pred HHhHHHHHHHHHh----cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCC
Q 038801 291 MVFYSSLISGYVK----LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQ----NGNVKGLANLIIEAQKLEPS 362 (662)
Q Consensus 291 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~ 362 (662)
...+..|...|.. .++.++|.+.|.+..+.. +...+..+...|.. .++.++|++.|++..+ .
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~---~ 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE---Q 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---C
Confidence 5667778888888 789999999998888764 77888888888887 8899999999999876 3
Q ss_pred CcccccchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 038801 363 GIVVDRSVGFGIISACVN----LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK----EHRTAEATQLVMDISSSGL 434 (662)
Q Consensus 363 ~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 434 (662)
+ +...+..+...+.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.|
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 2 45566777778877 899999999999999876 55677888888886 789999999999998864
Q ss_pred CCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCC
Q 038801 435 QLDVGNYDALIEASIT----SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN-----HRPELMAAFLDEVVEDPRV 505 (662)
Q Consensus 435 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~ 505 (662)
+...+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|..++++..+. +
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~- 326 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G- 326 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T-
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C-
Confidence 55677777777777 899999999999998775 334677777888877 8999999999998875 3
Q ss_pred ccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhhcccC
Q 038801 506 EVKTHDWNSIIHAFCKAG---RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIKRKISTDG 578 (662)
Q Consensus 506 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~ 578 (662)
+...+..+...|...| +.++|.+.|++..+.| +...+..|...|.. .+++++|++.|++..
T Consensus 327 --~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~------- 394 (490)
T 2xm6_A 327 --DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA------- 394 (490)
T ss_dssp --CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-------
T ss_pred --CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-------
Confidence 3456777888888766 8899999999999863 67788888888888 899999999999998
Q ss_pred CCCCcccHHHHHHHHHHHHc----cCchHHHHHHHHHHHhCCCC-CC--HHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 579 QKGIKFEHNLVDAFLYALVK----GGFFDAVMQVVEKSQEMKVF-VD--KWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 579 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~-p~--~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
+.+ +...+..|...|.+ .+++++|..++++..+.++. |+ .....++.+.. .+.+.++...++.++-.|.
T Consensus 395 ~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~-~~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 395 EQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA-KQLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHHHHHCH
T ss_pred hCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH-hHHHHHHHHHHHHHHHHHH
Confidence 544 45677788888887 89999999999999988854 21 22222222211 3445556666666665555
Q ss_pred HHH
Q 038801 652 IAF 654 (662)
Q Consensus 652 ~~~ 654 (662)
.+.
T Consensus 471 ~~~ 473 (490)
T 2xm6_A 471 EAW 473 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=7e-16 Score=163.07 Aligned_cols=412 Identities=8% Similarity=-0.032 Sum_probs=298.6
Q ss_pred CccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHH
Q 038801 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296 (662)
Q Consensus 217 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (662)
+-|...|..++. +.+. |++++|..+|+++.+.. +-+...|...+..+.+.|++++|..+|+.+.... |+...|..
T Consensus 10 P~~~~~w~~l~~-~~~~-~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQN-QPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHS-SCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHh-CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 447789999998 4666 99999999999998752 3455568888999999999999999999999864 78777777
Q ss_pred HHHH-HHhcCChhhHHH----HHHHHHcCCCCCCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhCC
Q 038801 297 LISG-YVKLGNLESASR----TILLCLGGGNMEQSDF-SKETYCEVVKGFLQ---------NGNVKGLANLIIEAQKLEP 361 (662)
Q Consensus 297 li~~-~~~~g~~~~A~~----~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~ 361 (662)
++.. ....|+.++|.+ +|.+.+... |..| +...|...+..... .|++++|..+|++... .|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~---g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P 160 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKI---GMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NP 160 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHT---TTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SC
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-ch
Confidence 7753 345677777765 666666542 2222 56788888776655 7899999999999864 11
Q ss_pred CCcccccchHHHHHHHH-------------HhcCChHHHHHHHHHHH------HCC---CCCC--------hhhHHHHHH
Q 038801 362 SGIVVDRSVGFGIISAC-------------VNLGLSDKAHSILDEMN------ACG---CSVG--------LGVYVPTLK 411 (662)
Q Consensus 362 ~~~~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~m~------~~~---~~~~--------~~~~~~li~ 411 (662)
.......|....... ...++++.|..++..+. +.. ++|+ ...|...+.
T Consensus 161 --~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~ 238 (530)
T 2ooe_A 161 --MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ 238 (530)
T ss_dssp --CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 111112222211110 12345677777776532 221 2333 245555553
Q ss_pred HHHHc----CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------CCCHH-------HHHHHHHHHHHcCC
Q 038801 412 AYCKE----HRT----AEATQLVMDISSSGLQLDVGNYDALIEASIT-------SQDFQ-------SAFSLFRDMREARI 469 (662)
Q Consensus 412 ~~~~~----g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~ 469 (662)
..... ++. +.+..+|++..... .-+...|..++..+.+ .|+++ +|..+|++..+.-.
T Consensus 239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 33222 232 47788999988762 2267788888888775 79987 89999999987433
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 038801 470 YDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYL 548 (662)
Q Consensus 470 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~ 548 (662)
|.+...+..++..+.+.|++++|..+|+++.+..+..+ ...|..++..+.+.|++++|.++|++..+. .|+ ...|.
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~ 394 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYV 394 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHH
Confidence 56677888999999999999999999999998522221 247999999999999999999999999975 333 33333
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC-CCC----H
Q 038801 549 SLING-YVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV-FVD----K 621 (662)
Q Consensus 549 ~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~ 621 (662)
..... +...|++++|..+|++..+ ..| +...|..++..+.+.|+.++|..+|+++.+.++ .|+ .
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~---------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLK---------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH---------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHH---------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 32222 3358999999999999983 234 457888999999999999999999999988754 455 7
Q ss_pred HhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 622 WKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 622 ~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
|...+.+...+|+.+.+..+.+++++..|.+
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 8777888888999999999999999999853
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=8e-18 Score=169.31 Aligned_cols=292 Identities=8% Similarity=-0.024 Sum_probs=199.9
Q ss_pred hcCCHHHHHH-HHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 038801 342 QNGNVKGLAN-LIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 342 ~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (662)
..|++++|.+ .|++...+.+.....+...+..+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3466666666 66554433222222234556667777777777777777777777764 456667777777777777777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHH---------------HHHHHHh
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT---------------IMTGLME 485 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------------ll~~~~~ 485 (662)
+|...|+++.+.. ..+..++..+...|...|++++|...|+++.+... .+...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 7777777777653 22566777777777777777777777777776542 22222211 2333447
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVL 564 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~ 564 (662)
.|++++|...++++.+..+..++..++..+...|.+.|++++|...|+++.+. .| +...|..+...+...|++++|+
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888775443335677888888888999999999999888875 34 4578888888888899999999
Q ss_pred HHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC------------CCHHhHHHHHHHH
Q 038801 565 MMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF------------VDKWKYKQAFMEN 631 (662)
Q Consensus 565 ~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~------------p~~~~~~~~~~~~ 631 (662)
..++++.+ +.| +...+..+..++.+.|++++|...++++.+..+. ++.|..+...+..
T Consensus 272 ~~~~~al~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 272 AAYRRALE---------LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp HHHHHHHH---------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 99988882 233 3577888888888999999999998888654332 3466666777778
Q ss_pred hhhhhhhHHHHHHHHh
Q 038801 632 HKKLKVAKLRKRNFKK 647 (662)
Q Consensus 632 ~~~~~~a~~~~~~~~~ 647 (662)
.|+.+.|..+.++.++
T Consensus 343 ~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 343 LGQSDAYGAADARDLS 358 (368)
T ss_dssp HTCGGGHHHHHTTCHH
T ss_pred hCChHhHHHhHHHHHH
Confidence 8888888888775554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=5.1e-17 Score=160.59 Aligned_cols=300 Identities=13% Similarity=-0.028 Sum_probs=157.6
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHH
Q 038801 253 RPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKET 332 (662)
Q Consensus 253 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 332 (662)
+.+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|...+.+.++..+. +...
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~ 92 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-----NPVS 92 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----STHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----CHHH
Confidence 3444455555555555666666666666655543 233444444555555556666666655555543221 3445
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038801 333 YCEVVKGFLQNG-NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK 411 (662)
Q Consensus 333 ~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 411 (662)
|..+...+...| ++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 167 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEK----TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCT----TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHH
Confidence 555555555555 55555555555543211 123334445555555555555555555555432 223344444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 491 (662)
.|...|++++|...|++..+.. ..+...+..+...+...|++++|...+++..+......
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------- 227 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG------------------- 227 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS-------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc-------------------
Confidence 5555555555555555554432 11334444455555555555555555554443210000
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.......+..+|..+..+|...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++++.
T Consensus 228 ---------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 228 ---------NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp ---------CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ---------ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 000112234567777777777777777777777777642 2244677777777777788888877777776
Q ss_pred HhhcccCCCCCcc-cHHHHHHHHHHH-HccCch
Q 038801 572 RKISTDGQKGIKF-EHNLVDAFLYAL-VKGGFF 602 (662)
Q Consensus 572 ~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~ 602 (662)
.+.| +...+..+..++ ...|+.
T Consensus 298 ---------~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 298 ---------GLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp ---------TTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred ---------ccCCCchHHHHHHHHHHHHHhCch
Confidence 3344 345566666665 345543
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=2.8e-14 Score=155.93 Aligned_cols=281 Identities=15% Similarity=0.162 Sum_probs=169.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHH
Q 038801 268 LKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVK 347 (662)
Q Consensus 268 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 347 (662)
..+++++|.++.++. -+..+|..+..++.+.|++++|.+.|.+. . |...|..++.++.+.|+++
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA---d-------D~say~eVa~~~~~lGkyE 1151 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---D-------DPSSYMEVVQAANTSGNWE 1151 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---C-------ChHHHHHHHHHHHHcCCHH
Confidence 455556655555533 22445556666666666666666655322 1 5556666666666666666
Q ss_pred HHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 038801 348 GLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVM 427 (662)
Q Consensus 348 ~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (662)
+|.+.|...++. .++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|.
T Consensus 1152 EAIeyL~mArk~-----~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1152 ELVKYLQMARKK-----ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred HHHHHHHHHHhh-----cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666666655431 122222333566666666655433221 1 2344445556666666666666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc
Q 038801 428 DISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV 507 (662)
Q Consensus 428 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 507 (662)
.. ..|..+..+|++.|++++|.+.+++. .+..+|.-+..+|...|++..|......+. .
T Consensus 1220 kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v 1278 (1630)
T 1xi4_A 1220 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------V 1278 (1630)
T ss_pred hh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------c
Confidence 53 25666666666666666666666655 222466666666666666666665544322 2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh--cCCHHHHHHHHHHHHHhhcccCCCCCcc
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVT--AEQYFSVLMMWHEIKRKISTDGQKGIKF 584 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~p 584 (662)
+...+..++..|.+.|.+++|..+++..+.. .+.. ..|+-|...+++ -++..+++++|..-. .+.+
T Consensus 1279 ~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~ri---------ni~k 1347 (1630)
T 1xi4_A 1279 HADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---------NIPK 1347 (1630)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---------ccch
Confidence 3446778889999999999999999888753 4433 467666666665 355556666655333 3333
Q ss_pred ------cHHHHHHHHHHHHccCchHHHHHH
Q 038801 585 ------EHNLVDAFLYALVKGGFFDAVMQV 608 (662)
Q Consensus 585 ------~~~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
+...|..++..|.+.|+++.|...
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 346788999999999999999843
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.9e-16 Score=156.43 Aligned_cols=271 Identities=10% Similarity=-0.055 Sum_probs=210.4
Q ss_pred CCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhH
Q 038801 215 FMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFY 294 (662)
Q Consensus 215 ~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 294 (662)
+...+...+..+...+... |++++|+++|+++.+.. +.+...+..++..+...|++++|..+++.+.+.. +.+..++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYN-CDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp ---CCCTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hchhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 3445555677778888887 99999999999998764 4456677778889999999999999999999874 4457888
Q ss_pred HHHHHHHHhcC-ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH
Q 038801 295 SSLISGYVKLG-NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG 373 (662)
Q Consensus 295 ~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 373 (662)
..+...+...| ++++|...|.+.+...+. +...|..+...+...|++++|.+.|+++.+..+. +...+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~ 164 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKT-----YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG----CHLPMLY 164 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-----CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT----CSHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc----cHHHHHH
Confidence 99999999999 999999999998876432 6778999999999999999999999999874433 4456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--------CCChhhHHHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGL--------QLDVGNYDALI 445 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------~~~~~~~~~li 445 (662)
+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...|++..+... ..+...+..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 8899999999999999999999875 56788999999999999999999999999876421 22356777888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 446 EASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEV 499 (662)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 499 (662)
.+|...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 88888888888888888877654 223333333444444444444444444433
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=2.8e-15 Score=158.48 Aligned_cols=414 Identities=8% Similarity=-0.017 Sum_probs=294.9
Q ss_pred CChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc
Q 038801 140 LDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN 219 (662)
Q Consensus 140 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 219 (662)
-+...+..++. +...|++++|..+|+++.+. .|....+...++..+.+.|++++|.++|+++.. ..|+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---------~~p~ 78 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---------KVLH 78 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---------TCCC
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------cCCC
Confidence 46678888887 47789999999999999884 577777778888889899999999999999976 5678
Q ss_pred HHHHHHHHHHHhccCCChhHHHH----HHHHHHh-cCCCCC-cccHHHHHHHHHH---------cCCHHHHHHHHHHHHh
Q 038801 220 IYACNAALEGCCYGLQSVSDAEK----VIETMSV-LGVRPN-ESSFGFLAYLYAL---------KGLQEKIVELESLMNE 284 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~----~~~~m~~-~g~~p~-~~t~~~li~~~~~---------~g~~~~a~~~~~~~~~ 284 (662)
...|...+.......|+.++|.+ +|+.... .|..|+ ...|...+....+ .|+++.|..+|+...+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 88887777644333377777765 7776654 365554 3455556655544 6889999999999988
Q ss_pred cCCCCcHHhHHHHHHHH-------------HhcCChhhHHHHHHH------HHcCCCCCCCCCC--------HHHHHHHH
Q 038801 285 FGFSSQMVFYSSLISGY-------------VKLGNLESASRTILL------CLGGGNMEQSDFS--------KETYCEVV 337 (662)
Q Consensus 285 ~g~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~------~~~~~~~~~~~p~--------~~~~~~li 337 (662)
.........|....... .+.++++.|..++.+ .++.. ...+.|+ ...|...+
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~-~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRN-APSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSS-SCCCCCC--CCHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccc-cccCCCCCChhHHHHHHHHHHHH
Confidence 32111123343322211 123456667666544 33321 1112333 34666665
Q ss_pred HHHHhc----CCH----HHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh-------cCChH-------HHHHHHHHHH
Q 038801 338 KGFLQN----GNV----KGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN-------LGLSD-------KAHSILDEMN 395 (662)
Q Consensus 338 ~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~m~ 395 (662)
...... ++. ..+..+|+++....+ -+...|......+.+ .|+++ +|..+|++..
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p----~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG----HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 443332 232 477888988876322 244556666666654 69987 8999999998
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc
Q 038801 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV--GNYDALIEASITSQDFQSAFSLFRDMREARIYDLK 473 (662)
Q Consensus 396 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 473 (662)
+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|..+|++..+.. +.+.
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~ 390 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH 390 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCT
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCch
Confidence 7323556889999999999999999999999999986 5542 579999999999999999999999998763 2222
Q ss_pred ccHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHH
Q 038801 474 GSYLTIMTG-LMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ-FEPN--DQTYLS 549 (662)
Q Consensus 474 ~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ 549 (662)
..|...... +...|+.++|..+|++..+..+ -+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|..
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 333322222 3468999999999999887533 246789999999999999999999999999863 2332 347888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 550 LINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 550 li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
.+......|+.+.+..+++++.+.++
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 88888889999999999999996554
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=3e-14 Score=148.94 Aligned_cols=344 Identities=10% Similarity=-0.025 Sum_probs=260.8
Q ss_pred HHHHHHhhc----CCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhc----cCCChhHHHHHHHHHHhcCCC
Q 038801 182 GFLVDICRK----NSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCY----GLQSVSDAEKVIETMSVLGVR 253 (662)
Q Consensus 182 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~~a~~~~~~m~~~g~~ 253 (662)
..|...|.. .+++++|...|++..+. .+...+..+-..|.. . +++++|++.|++..+.|
T Consensus 43 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 43 LELGYRYFQGNETTKDLTQAMDWFRRAAEQ----------GYTPAEYVLGLRYMNGEGVP-QDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCC--
Confidence 334444544 67788888888877651 244555555555655 5 78888888888877655
Q ss_pred CCcccHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh----cCChhhHHHHHHHHHcCCCCCC
Q 038801 254 PNESSFGFLAYLYAL----KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVK----LGNLESASRTILLCLGGGNMEQ 325 (662)
Q Consensus 254 p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 325 (662)
+...+..|-..|.. .+++++|...|+...+.| +...+..|...|.. .++.++|.+.|.+..+..
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---- 181 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---- 181 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 44555666666666 678888888888887765 45566677777776 678888888888777763
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh----cCChHHHHHHHHHHHHC
Q 038801 326 SDFSKETYCEVVKGFLQ----NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN----LGLSDKAHSILDEMNAC 397 (662)
Q Consensus 326 ~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~ 397 (662)
+...+..+...|.. .++.++|.++|++..+ .+ +...+..+...+.. .+++++|.+.|++..+.
T Consensus 182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT---SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH---CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 67788888888887 7888888888888765 22 33456666666665 78889999999988876
Q ss_pred CCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-----CCHHHHHHHHHHHHHcC
Q 038801 398 GCSVGLGVYVPTLKAYCK----EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS-----QDFQSAFSLFRDMREAR 468 (662)
Q Consensus 398 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~ 468 (662)
| +...+..+...|.. .++.++|...|++..+.| +...+..+...|... +++++|...|++..+.+
T Consensus 253 ~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 253 G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG 326 (490)
T ss_dssp T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC
Confidence 5 45566677777777 889999999999988764 556777777888776 89999999999998876
Q ss_pred CCCCcccHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 038801 469 IYDLKGSYLTIMTGLMENH---RPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----AGRLEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~ 541 (662)
. ...+..+...|...| +.++|.++|++..+. + +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 327 ~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-- 397 (490)
T 2xm6_A 327 D---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-- 397 (490)
T ss_dssp C---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred C---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--
Confidence 2 346777777777766 788999999998875 2 45678888888988 899999999999999865
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 038801 542 PNDQTYLSLINGYVT----AEQYFSVLMMWHEIK 571 (662)
Q Consensus 542 p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 571 (662)
+...+..|...|.. .+++++|...|++..
T Consensus 398 -~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 398 -LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 56788888888887 899999999999999
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=5.5e-14 Score=153.71 Aligned_cols=418 Identities=11% Similarity=0.068 Sum_probs=307.7
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHHHHhhhCC--CCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHH
Q 038801 68 ITSLETNLHKSLLTNNTDEAWKSFKSLTANS--LFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTV 145 (662)
Q Consensus 68 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (662)
+.--...+++|...|.+.+|++++++..-.+ +.-+....+.++..-.+.. ..+..+..... . .. ..
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD-~~Rv~eyI~kL-------d-~~---d~ 1052 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKAD-RTRVMEYINRL-------D-NY---DA 1052 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhC-hhhHHHHHHHh-------h-hc---cH
Confidence 3344567888999999999999999998432 2234566677777776663 23333333221 1 11 24
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHH
Q 038801 146 HTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNA 225 (662)
Q Consensus 146 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (662)
..+...+...|.+++|..+|++... ....+-..+...+++++|.++.+++ -+..+|..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~---------~~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsq 1110 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV---------NTSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQ 1110 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC---------HHHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHH
Confidence 4578889999999999999999631 1111222233678999999998875 23567889
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcC
Q 038801 226 ALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLG 305 (662)
Q Consensus 226 ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 305 (662)
+-.++... |++++|++.|.+- -|...|..++..|.+.|++++|.+.+....+.. ++....+.++.+|++.+
T Consensus 1111 LAKAql~~-G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1111 LAKAQLQK-GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHHhC-CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 99999997 9999999999663 367778889999999999999999999888765 44444556999999999
Q ss_pred ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChH
Q 038801 306 NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSD 385 (662)
Q Consensus 306 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 385 (662)
++++.... +.. ++...|..+...|...|++++|..+|... ..|..+...+++.|+++
T Consensus 1182 rleele~f----I~~-------~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1182 RLAELEEF----ING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred CHHHHHHH----HhC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHH
Confidence 98864432 332 26678888999999999999999999874 26889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
+|.+.+++. .+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...
T Consensus 1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999876 45689999999999999999998877653 3366777899999999999999999998887
Q ss_pred HcCCCCCcccHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCCcc------chhhHHHHHHHHHhcCCHHHHHHH------
Q 038801 466 EARIYDLKGSYLTIMTGLME--NHRPELMAAFLDEVVEDPRVEV------KTHDWNSIIHAFCKAGRLEDAKRT------ 531 (662)
Q Consensus 466 ~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~------ 531 (662)
... +.....|+-+...+++ .++..++.++|..-. ++.+ +...|.-++..|.+.|+++.|...
T Consensus 1308 ~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~ 1383 (1630)
T 1xi4_A 1308 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 1383 (1630)
T ss_pred ccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccH
Confidence 655 4444556555555555 344555555555432 2222 456799999999999999999832
Q ss_pred -------HHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHH
Q 038801 532 -------LRRMIFLQFEPNDQTYLSLINGYVTAE---------------QYFSVLMMWH 568 (662)
Q Consensus 532 -------~~~m~~~~~~p~~~~~~~li~~~~~~~---------------~~~~a~~~~~ 568 (662)
|++.... ..|...|.-.+..|...+ +++++.++|.
T Consensus 1384 ~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1384 DAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 3333322 335667777777777655 7777777776
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=3.4e-17 Score=164.57 Aligned_cols=262 Identities=7% Similarity=-0.027 Sum_probs=151.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
.+..+...+.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. ..+..+|..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555555555566666666666555543 3345556666666666666666666666665542 113555666666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCc----------ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLK----------GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAF 519 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 519 (662)
..|++++|...|+++.+.. +.+. ..+..+...+...|++++|..+++++.+..+...+..+|..+...|
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6666666666666665542 1111 1223345566666667777777766665433323455667777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHc
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVK 598 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 598 (662)
...|++++|.+.|+++.+.. ..+..+|..+..+|...|++++|+..|+++.+ +.|+ ..++..+..++.+
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE---------IQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCchHHHHHHHHHHHH
Confidence 77777777777777776642 22456777777777777777777777777762 2333 4566667777777
Q ss_pred cCchHHHHHHHHHHHhCCCC-------------CCHHhHHHHHHHHhhhhhhhHHHHHH
Q 038801 599 GGFFDAVMQVVEKSQEMKVF-------------VDKWKYKQAFMENHKKLKVAKLRKRN 644 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~~~~-------------p~~~~~~~~~~~~~~~~~~a~~~~~~ 644 (662)
.|++++|...++++.+..+. ...|..+...+...|+.+.+.++.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777777777776544322 34555555666666776666665544
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=5.2e-17 Score=163.34 Aligned_cols=298 Identities=11% Similarity=-0.021 Sum_probs=205.4
Q ss_pred cCChhhHHH-HHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcC
Q 038801 304 LGNLESASR-TILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG 382 (662)
Q Consensus 304 ~g~~~~A~~-~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~ 382 (662)
.|++++|.. .|.+.+...+. ....+...+..+...+.+.|++++|...|+++.+..+ .+...+..+..++...|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEE-NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP----KHMEAWQYLGTTQAENE 112 (368)
T ss_dssp --------CHHHHCCCCCCSS-CTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhHHHhcCCC-CcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCc
Confidence 356666665 55444433211 1111345566677777777777777777777765322 23445666777777777
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHH---------------HHHH
Q 038801 383 LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDA---------------LIEA 447 (662)
Q Consensus 383 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~ 447 (662)
++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+.... +...+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 7777777777777654 446677777777777888888888888777765322 1222211 2333
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHH
Q 038801 448 SITSQDFQSAFSLFRDMREARIYD-LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLE 526 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (662)
+...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+..+ .+..+|..+...|...|+++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP--NDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHcCCHH
Confidence 448889999999999988775221 467788888999999999999999999877422 24568999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC--C-CcccHHHHHHHHHHHHccCchH
Q 038801 527 DAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK--G-IKFEHNLVDAFLYALVKGGFFD 603 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~ 603 (662)
+|...|+++.+.. ..+...+..+..+|.+.|++++|...|+++.+..+..... . ......+|..+..++.+.|+.+
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 9999999998752 2356799999999999999999999999998554422000 0 0112578999999999999999
Q ss_pred HHHHHHHH
Q 038801 604 AVMQVVEK 611 (662)
Q Consensus 604 ~A~~~~~~ 611 (662)
+|..++++
T Consensus 348 ~A~~~~~~ 355 (368)
T 1fch_A 348 AYGAADAR 355 (368)
T ss_dssp GHHHHHTT
T ss_pred hHHHhHHH
Confidence 99988864
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.6e-16 Score=155.92 Aligned_cols=285 Identities=14% Similarity=0.081 Sum_probs=134.0
Q ss_pred hcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 038801 189 RKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYAL 268 (662)
Q Consensus 189 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 268 (662)
.+.|++++|.++++++ ..| .+|..+..++.+. |++++|++.|.+. +|..+|..++.++..
T Consensus 14 ~~~~~ld~A~~fae~~-----------~~~--~vWs~La~A~l~~-g~~~eAIdsfika------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----------NEP--AVWSQLAKAQLQK-GMVKEAIDSYIKA------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----------CCh--HHHHHHHHHHHHc-CCHHHHHHHHHcC------CCHHHHHHHHHHHHh
Confidence 3678899999999987 233 4999999999998 9999999999653 577799999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038801 269 KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKG 348 (662)
Q Consensus 269 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 348 (662)
.|++++|+.+++...+. .++..+.+.|+.+|.+.|+++++.+++. .|+..+|+.+...|...|++++
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-----------CC----------------CTTT
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------CCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999988877774 4667889999999999999999887651 2577799999999999999999
Q ss_pred HHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 038801 349 LANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMD 428 (662)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 428 (662)
|..+|..+ ..|..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 141 AKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp HHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999875 36889999999999999999999988 3789999999999999999999665554
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-
Q 038801 429 ISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV- 507 (662)
Q Consensus 429 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p- 507 (662)
+. .+......++..|.+.|++++|..+++...... +-....|+.|.-.|++- +++...+.++....+-++.|
T Consensus 203 L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~ 275 (449)
T 1b89_A 203 IV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKV 275 (449)
T ss_dssp TT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHH
T ss_pred HH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHH
Confidence 32 233335578899999999999999999988665 44455666666666654 33444444443333334444
Q ss_pred -----chhhHHHHHHHHHhcCCHHHHHHH
Q 038801 508 -----KTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 508 -----~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
+...|..++..|...++++.|...
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 467899999999999999988774
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=184.37 Aligned_cols=154 Identities=9% Similarity=0.085 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 408 (662)
-..+||++|++||+.|+.++|.++|++|.++...|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999998887654568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC------cccHHHHHH
Q 038801 409 TLKAYCKEHR-TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDL------KGSYLTIMT 481 (662)
Q Consensus 409 li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~ll~ 481 (662)
+|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+ +.+++..+++ ..+..|. ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999988 47889999999999999999999988876555 3444444444 3333332 455556666
Q ss_pred HHHhcC
Q 038801 482 GLMENH 487 (662)
Q Consensus 482 ~~~~~~ 487 (662)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666555
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=5.1e-19 Score=186.92 Aligned_cols=166 Identities=10% Similarity=0.112 Sum_probs=135.6
Q ss_pred ccccchHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhH
Q 038801 365 VVDRSVGFGIISACVNLGLSDKAHSILDEMNA---CGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNY 441 (662)
Q Consensus 365 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 441 (662)
..-..||+++|++||+.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||++||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456899999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc------hhhHHH
Q 038801 442 DALIEASITSQDF-QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK------THDWNS 514 (662)
Q Consensus 442 ~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~ 514 (662)
|++|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+ +++..+++.. +..|+ ..+...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P--~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKP--TFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCC--CCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCc--ccCCCCCCcccccchHH
Confidence 9999999999984 789999999999999999999999997666643 3344444432 33332 556666
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHHH
Q 038801 515 IIHAFCKAG---------RLEDAKRTLRRMI 536 (662)
Q Consensus 515 li~~~~~~g---------~~~~A~~~~~~m~ 536 (662)
|.+.|.+.+ ..++-.++|++=.
T Consensus 278 L~dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp THHHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 777777655 2455556665443
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=2.9e-16 Score=157.75 Aligned_cols=271 Identities=10% Similarity=0.009 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 408 (662)
+...|..+...+.+.|++++|.+.|+++....+. +...+..+..++...|++++|...|+++.+.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG----DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3445777777777777777777777777654322 44566677777778888888888888777754 445777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----------hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--Cccc
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQLD-----------VGNYDALIEASITSQDFQSAFSLFRDMREARIYD--LKGS 475 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~ 475 (662)
+..+|...|++++|...|+++.+. .|+ ...+..+...+...|++++|..+|+++.+.. +. +..+
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 215 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDL 215 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHH
Confidence 888888888888888888887765 222 1223345778888999999999999998875 33 5678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGY 554 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 554 (662)
+..+...+...|++++|...+++..+..+ .+..+|..+..+|...|++++|...|+++.+. .|+ ..+|..+..+|
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRP--EDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 88888999999999999999999887422 24678999999999999999999999999985 454 67999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhhcccCCCC----CcccHHHHHHHHHHHHccCchHHHHHHHHH
Q 038801 555 VTAEQYFSVLMMWHEIKRKISTDGQKG----IKFEHNLVDAFLYALVKGGFFDAVMQVVEK 611 (662)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
...|++++|...|+++.+..+...... ...+..+|..+..++...|+.+.+..+.++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999996554321111 011357899999999999999998887765
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.1e-15 Score=150.68 Aligned_cols=231 Identities=13% Similarity=0.006 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
..|..+...+...|++++|..+|+++.+..+. +...+..+..++...|++++|.+.++++.+.. +.+..++..+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 34455555666666666666666665542221 33344455555566666666666666655543 33455555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHcCCCCCccc
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDAL--------------IE-ASITSQDFQSAFSLFRDMREARIYDLKGS 475 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 475 (662)
..|...|++++|...++++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 6666666666666666665554211 22222222 11 2444445555555555554443 223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
+..+...+...|++++|...++++.+..+ .+..+|..+...|...|++++|.+.|+++.+.. ..+...+..+...+.
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRP--DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 44444445555555555555544443211 123344444444445555555555554444421 112344444444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 038801 556 TAEQYFSVLMMWHEIK 571 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~ 571 (662)
..|++++|.+.++++.
T Consensus 252 ~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4555555555554444
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=3.5e-14 Score=147.95 Aligned_cols=256 Identities=12% Similarity=-0.009 Sum_probs=127.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK----EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
.++.++|.+.+++.++.. +.+..++..+...+.. .|++++|.+++++..... ..+...+..+...|...|++++
T Consensus 188 ~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp SCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHH
Confidence 344444555554444432 2233333333333322 234445555555544432 1133444445555555555555
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHh-------------------cCCHHHHHHHHHHHhhCCCCccchhhHHHHHH
Q 038801 457 AFSLFRDMREARIYDLKGSYLTIMTGLME-------------------NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIH 517 (662)
Q Consensus 457 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 517 (662)
|...|++..+.. |.+..++..+...|.. .+..+.|...+++..+..+. +..++..+..
T Consensus 266 A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~lg~ 342 (472)
T 4g1t_A 266 AIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN--LFRVCSILAS 342 (472)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT--TCCCHHHHHH
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc--hhhhhhhHHH
Confidence 555555554442 2233333333332221 22356777888877664222 3457888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHH
Q 038801 518 AFCKAGRLEDAKRTLRRMIFLQFEPND--QTYLSLIN-GYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLY 594 (662)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~ 594 (662)
.|...|++++|.+.|++..+....+.. ..+..+.. .....|++++|+..|++.. .+.|+.....
T Consensus 343 ~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---------~i~~~~~~~~---- 409 (472)
T 4g1t_A 343 LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---------KINQKSREKE---- 409 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---------HSCCCCHHHH----
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------hcCcccHHHH----
Confidence 999999999999999999875332222 12333332 2346799999999999988 3445543222
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH-HHhhhC
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA-FKNWAG 659 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~-~~~~~~ 659 (662)
+....+.+++++..+.++. +..+..+...+...|+.+.|...+++++++.|... -..|.|
T Consensus 410 -----~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 -----KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2234455666666555554 67888877788888999999999999999887653 444544
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2.4e-15 Score=148.31 Aligned_cols=278 Identities=14% Similarity=0.031 Sum_probs=220.7
Q ss_pred cHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc
Q 038801 290 QMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS 369 (662)
Q Consensus 290 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (662)
+...+..+...+...|++++|..+|.+.++..+. +...|..+..++...|++++|.+.++++.+..+. +..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~ 90 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----DIA 90 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----CHH
Confidence 4566778889999999999999999999887433 7889999999999999999999999999874332 456
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhCCC
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPT--------------LK-AYCKEHRTAEATQLVMDISSSGL 434 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~ 434 (662)
++..+...+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+...
T Consensus 91 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 91 VHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 77788999999999999999999999874 3344455444 33 47788999999999999988742
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 435 QLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 435 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+..+ .+...|..
T Consensus 170 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~ 245 (327)
T 3cv0_A 170 -NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP--GYVRVMYN 245 (327)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHH
Confidence 267889999999999999999999999999875 55667899999999999999999999999887522 24668899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLY 594 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~ 594 (662)
+..+|...|++++|.+.|+++.+. .|+...- .+ ......+..++..+..
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~---------~~--------------------~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTP---------TG--------------------EASREATRSMWDFFRM 294 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC----------------------------------CCTHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCccccc---------cc--------------------cchhhcCHHHHHHHHH
Confidence 999999999999999999988753 2221000 00 0011224567788888
Q ss_pred HHHccCchHHHHHHHHHH
Q 038801 595 ALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m 612 (662)
++.+.|++++|..++++.
T Consensus 295 ~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHTTCHHHHHHHTTCC
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 999999999999998754
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=3.1e-14 Score=148.37 Aligned_cols=397 Identities=8% Similarity=-0.079 Sum_probs=226.5
Q ss_pred CcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCC-ccHHHHHHHHHHHhccCCChhHHHHHHHHHHhc----
Q 038801 176 PFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMK-PNIYACNAALEGCCYGLQSVSDAEKVIETMSVL---- 250 (662)
Q Consensus 176 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~---- 250 (662)
.....++.|..++...|++++|++.|++..++.......... ....+|+.+-..|... |++++|...|++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhHhc
Confidence 345567778888888899999999998887654332211123 3456888888888887 9999999998887542
Q ss_pred -C-CCCC-cccHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHH---HHhcCChhhHHHHHHHHHcCC
Q 038801 251 -G-VRPN-ESSFGFLAYLYALK--GLQEKIVELESLMNEFGFSSQ-MVFYSSLISG---YVKLGNLESASRTILLCLGGG 321 (662)
Q Consensus 251 -g-~~p~-~~t~~~li~~~~~~--g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~ 321 (662)
+ ..++ ..++.....++... +++++|.+.|+...+.. |+ ...+..+..+ +...++.++|++.+.+.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 1111 22344443344443 45788888888877754 43 4444444433 345567777777777766643
Q ss_pred CCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038801 322 NMEQSDFSKETYCEVVKGFLQ----NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC 397 (662)
Q Consensus 322 ~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 397 (662)
+. +...+..+...+.. .|+.++|.+.+++.....+ .+...+..+...+...|++++|...+++..+.
T Consensus 206 p~-----~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 206 PD-----NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP----GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp SS-----CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cc-----chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc----cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 22 45555555444443 3456677777777654322 23344556666777777777777777776665
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHH
Q 038801 398 GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYL 477 (662)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 477 (662)
. +.+..++..+..+|...+.... ... ...........+..++|...|++..+.. +.+..++.
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 3 3344555555554432211100 000 0000000111234677888888887765 55667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccch--hhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVEDPRVEVKT--HDWNSIIH-AFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGY 554 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 554 (662)
.+...+...|++++|+..|++..+. ...+.. ..+..+.. .+...|+.++|+..|++..+. .|+.......
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---- 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---- 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH----
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH----
Confidence 8999999999999999999988764 222221 12233322 235789999999999999874 6665332222
Q ss_pred HhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHh
Q 038801 555 VTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWK 623 (662)
Q Consensus 555 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~ 623 (662)
...+.++++... ...| +..+|..+..++...|++++|++.+++..+.+.. |+..+
T Consensus 412 -----~~~l~~~~~~~l---------~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 412 -----KDKLQKIAKMRL---------SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp -----HHHHHHHHHHHH---------HHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred -----HHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 233445555555 1223 4578999999999999999999999999887654 55443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.4e-15 Score=146.49 Aligned_cols=254 Identities=9% Similarity=-0.033 Sum_probs=192.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCccccc--chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR--SVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYC 414 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 414 (662)
|+.....|++.+|+..+++.. ...|+. .....+..++...|+++.|...++. .-+|+..++..+...+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~-----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK-----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC-----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc-----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHc
Confidence 455667899999999887753 334443 2334567889999999998876644 23667788888888999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038801 415 KEHRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMA 493 (662)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 493 (662)
..|+.++|.+.++++...+..|+ ...+..+...+...|++++|++.+++ +.+...+..+...+.+.|+.++|.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999888765564 45566667888999999999999887 566678888888999999999999
Q ss_pred HHHHHHhhCCCCccchh---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 494 AFLDEVVEDPRVEVKTH---DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 494 ~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
+.++++.+.. |+.. .....+..+...|++++|..+|+++.+. ...+...|+.+..++.+.|++++|...++++
T Consensus 151 ~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 151 KELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988752 4421 1122334444558899999999999886 2446678888999999999999999999998
Q ss_pred HHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHH-HHHHHHHHHhCCCC
Q 038801 571 KRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDA-VMQVVEKSQEMKVF 618 (662)
Q Consensus 571 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~ 618 (662)
. ...| +..++..++..+...|+.++ +.++++++.+.++.
T Consensus 227 l---------~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 227 L---------DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp H---------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred H---------HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 8 2344 45678888888888888876 56888888776665
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=6.9e-15 Score=141.57 Aligned_cols=274 Identities=10% Similarity=0.040 Sum_probs=200.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHH
Q 038801 298 ISGYVKLGNLESASRTILLCLGGGNMEQSDFSK--ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGII 375 (662)
Q Consensus 298 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll 375 (662)
|+-....|++..|+..+.+ .. ...|+. .....+.++|...|+++.|+..++. .-.|+..++..+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~-~~-----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la 72 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQR-VK-----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFA 72 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHH-SC-----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-cc-----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHH
Confidence 4556678899999876432 21 233332 3556678899999999998876533 2345566677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 376 SACVNLGLSDKAHSILDEMNACGCSV-GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
..+...++.++|.+.++++...+..| +...+..+..+|...|++++|++.+++ ..+...+..++..|.+.|++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCH
Confidence 88888889999999999988876434 566677777889999999999999887 34677888888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHH----HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIM----TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (662)
++|.+.|+++.+.. |+. +...+. ..+...|++++|..+|+++.+.. ..+...|+.+..++.+.|++++|.+
T Consensus 147 ~~A~~~l~~~~~~~--p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 147 DLARKELKKMQDQD--EDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhC--cCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999998874 442 233333 33444588999999999988853 3456788889999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHH
Q 038801 531 TLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFS-VLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQV 608 (662)
Q Consensus 531 ~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
.|++..+. .| +..++..++..+...|+.++ +.++++++. .+.|+... +.....+.+.++++..-
T Consensus 222 ~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~---------~~~P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 222 VLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK---------DAHRSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---------HHCTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---------HhCCCChH---HHHHHHHHHHHHHHHHH
Confidence 99998875 45 55788888888888888865 578888888 45566532 22335566666665543
Q ss_pred H
Q 038801 609 V 609 (662)
Q Consensus 609 ~ 609 (662)
|
T Consensus 288 ~ 288 (291)
T 3mkr_A 288 Y 288 (291)
T ss_dssp H
T ss_pred c
Confidence 3
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=8.8e-15 Score=143.62 Aligned_cols=282 Identities=11% Similarity=0.028 Sum_probs=117.4
Q ss_pred hhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCch
Q 038801 80 LTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAA 159 (662)
Q Consensus 80 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 159 (662)
..|+.++|.++++++ +++.+|+.+..++.+.|+..++.+.|.. .+|..+|..++.++...|+++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik----------a~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK----------ADDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc----------CCCHHHHHHHHHHHHhCCCHH
Confidence 357788999999988 3445899999999999987777777632 256678889999999999999
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhH
Q 038801 160 PAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSD 239 (662)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 239 (662)
+|+..++...+. .++ ....+.|+.+|.+.|+++++.++++ .|+..+|+.+...|... |++++
T Consensus 79 eAi~yl~~ark~--~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~--------------~pn~~a~~~IGd~~~~~-g~yee 140 (449)
T 1b89_A 79 ELVKYLQMARKK--ARE-SYVETELIFALAKTNRLAELEEFIN--------------GPNNAHIQQVGDRCYDE-KMYDA 140 (449)
T ss_dssp ---------------------------------CHHHHTTTTT--------------CC-----------------CTTT
T ss_pred HHHHHHHHHHHh--Ccc-chhHHHHHHHHHHhCCHHHHHHHHc--------------CCcHHHHHHHHHHHHHc-CCHHH
Confidence 999977777663 222 4446678888889999888876664 35667899999988887 99999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHc
Q 038801 240 AEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLG 319 (662)
Q Consensus 240 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 319 (662)
|...|..+ ..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--- 202 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 202 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---
Confidence 99999876 36888889999999999999888877 3678888999999999999988665332
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh--cCChHHHHHHHHHHHHC
Q 038801 320 GGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN--LGLSDKAHSILDEMNAC 397 (662)
Q Consensus 320 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~ 397 (662)
+...+.....++..|.+.|.+++|..+++....++ +.....|+-+.-++++ .+++.+..+.|.. +.
T Consensus 203 ------L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le----~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~i 270 (449)
T 1b89_A 203 ------IVVHADELEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSKFKPQKMREHLELFWS--RV 270 (449)
T ss_dssp ------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST----TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TS
T ss_pred ------HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--Hh
Confidence 11244445568888888889998888888875432 1223344444444443 3344444444431 11
Q ss_pred CCCC------ChhhHHHHHHHHHHcCCHHHHHHH
Q 038801 398 GCSV------GLGVYVPTLKAYCKEHRTAEATQL 425 (662)
Q Consensus 398 ~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 425 (662)
+++| +...|.-++..|.+-++++.|...
T Consensus 271 ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 271 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 2222 356777777778888888777653
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.5e-13 Score=128.56 Aligned_cols=221 Identities=8% Similarity=-0.026 Sum_probs=125.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CC----hhhHHHHHH
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ--LD----VGNYDALIE 446 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~----~~~~~~li~ 446 (662)
.+...+...|++++|...|+++.+.. .+..++..+..+|...|++++|...|++..+.... ++ ...|..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 34444444444444544444444443 34445555555555555555555555554433110 01 345555555
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHH
Q 038801 447 ASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLE 526 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (662)
.|...|++++|...|++..+.. |+ ...+...|++++|...++++.... ..+...|..+...+...|+++
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHH
Confidence 5556666666666666555542 11 133445556666666666665531 123445666777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHH
Q 038801 527 DAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAV 605 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 605 (662)
+|...|+++.+.. ..+...|..+...+...|++++|+..++++.+ ..| +...+..+..++.+.|++++|
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---------~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE---------KDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------hCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7777777777642 22456677777777777777777777777762 223 345666677777777777777
Q ss_pred HHHHHHHHhCC
Q 038801 606 MQVVEKSQEMK 616 (662)
Q Consensus 606 ~~~~~~m~~~~ 616 (662)
.+.++++.+..
T Consensus 227 ~~~~~~a~~~~ 237 (258)
T 3uq3_A 227 LETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 77777765443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=6.4e-13 Score=125.77 Aligned_cols=226 Identities=10% Similarity=0.013 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----h
Q 038801 330 KETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC--SVG----L 403 (662)
Q Consensus 330 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~ 403 (662)
...|..+...+...|++++|++.|+++.+. . .+...+..+..++...|++++|.+.+++..+..- .++ .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL---H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh---h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 456778888888999999999999988763 2 5667788888889999999999999998877431 112 5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
.++..+..+|.+.|++++|...|++..+. .|+. ..+...|++++|...++++.... +.+...+..+...+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHH
Confidence 78888999999999999999999998875 3442 34666788999999999988864 44556788888899
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038801 484 MENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSV 563 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a 563 (662)
...|++++|...+++..+..+ .+..+|..+..+|...|++++|...|++..+.. ..+...|..+..++...|++++|
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999887532 246788999999999999999999999999853 23467899999999999999999
Q ss_pred HHHHHHHHHh
Q 038801 564 LMMWHEIKRK 573 (662)
Q Consensus 564 ~~~~~~m~~~ 573 (662)
...++++.+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999843
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=1.1e-12 Score=125.26 Aligned_cols=243 Identities=9% Similarity=0.015 Sum_probs=178.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD--VGNYDALIEA 447 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~ 447 (662)
.+......+...|++++|...|++..+.. +.+...+..+..+|...|++++|...|++..+....++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455666777778888888888777764 34555777777788888888888888888877432222 2237778888
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHH
Q 038801 448 SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (662)
+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..+ .+...|..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT--TDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC--CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888765 45556788888888888888888888888877522 234567777734444569999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchH
Q 038801 528 AKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQ---YFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFD 603 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 603 (662)
|.+.|+++.+. .|+ ...+..+..++...|+ +++|...++++.+........+...-..+|..+...+.+.|+++
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999985 454 5788888888888888 88899999999865432111110001267888899999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 038801 604 AVMQVVEKSQEMKVF 618 (662)
Q Consensus 604 ~A~~~~~~m~~~~~~ 618 (662)
+|.+.++++.+..+.
T Consensus 239 ~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 239 KADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCcc
Confidence 999999999887654
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=3.4e-13 Score=123.84 Aligned_cols=198 Identities=11% Similarity=0.012 Sum_probs=121.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 038801 401 VGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM 480 (662)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 480 (662)
++...+..+...+.+.|++++|...|++..+... .+...+..+..++.+.|++++|+..|++..+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3445555566666666666666666666665421 144556666666666666666666666666554 44445556666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038801 481 TGLMEN-----------HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLS 549 (662)
Q Consensus 481 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 549 (662)
..+... |++++|+..+++..+..+- +...|..+..+|...|++++|+..|++..+.. .+...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 666666 7777777777777663221 34567777788888888888888888888765 56777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 550 LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 550 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+..++...|++++|+..|+++. ...| +...+..+..++.+.|++++|++.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al---------~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKAL---------EQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH---------HHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHH---------HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888887 2334 34667777778888888888888887754
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=6e-12 Score=120.31 Aligned_cols=186 Identities=8% Similarity=0.026 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK----EHRTAEATQLVMDISSSGLQLDVGNYDALI 445 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 445 (662)
.+..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3444445555555555555555555552 233444455555555 555555555555555543 444455555
Q ss_pred HHHHc----CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccchhhHHHHHH
Q 038801 446 EASIT----SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME----NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIH 517 (662)
Q Consensus 446 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 517 (662)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .++.++|..++++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 55555 555555555555555443 22334444444444 44444444444444432 1 2223333444
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 038801 518 AFCK----AGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIK 571 (662)
Q Consensus 518 ~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 571 (662)
.|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 4443 444444444444444321 23334444444444 444444444444444
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=9.3e-13 Score=126.04 Aligned_cols=245 Identities=9% Similarity=-0.050 Sum_probs=142.7
Q ss_pred CChHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 038801 382 GLSDKAHSILDEMNACGC---SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF 458 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 458 (662)
|++++|...++++.+... +.+..++..+...|...|++++|...|+++.+... .+...|..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence 455666666666655421 11345556666666666666666666666665421 14556666666666666666666
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 459 SLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 459 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
..|+++.+.. +.+...+..+...+...|++++|...++++.+.. |+...+...+..+...|++++|...+++....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 6666666653 3344566666666666666666666666665532 22222333334445667788888888766654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc--cc-HHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 539 QFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK--FE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 539 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
. .++...+ .++..+...++.++|+..++++. ..... |+ ..++..+...+.+.|++++|...++++.+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADA-------TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC-------CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh-------cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 2333333 35566666777777777777776 22111 11 466777777788888888888888887665
Q ss_pred CCCCCHHhHHHHHHHHhhhhhhhHHHH
Q 038801 616 KVFVDKWKYKQAFMENHKKLKVAKLRK 642 (662)
Q Consensus 616 ~~~p~~~~~~~~~~~~~~~~~~a~~~~ 642 (662)
+ |+.+......+...|+++.|...+
T Consensus 245 ~--p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 N--VHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--CTTCHHHHHHHHHHHHHHHC----
T ss_pred C--chhHHHHHHHHHHHHHHHhhHHHH
Confidence 4 433343344455556666665543
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=2.2e-12 Score=132.58 Aligned_cols=378 Identities=11% Similarity=0.005 Sum_probs=244.8
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQ---EKIVELESLMNEFGFSSQMVFYSSLISGYVK 303 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 303 (662)
-..+.+. |++++|+++|++..+.| +...+..+-..+...|+. ++|...|+...+. +...+..|...+..
T Consensus 10 a~~~~~~-g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 10 ANEALKR-GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHhC-CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 3445555 99999999999998876 333444455566667777 8999999988754 55566667765555
Q ss_pred cC-----ChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhCCCCcccccchHHHHH
Q 038801 304 LG-----NLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKG---LANLIIEAQKLEPSGIVVDRSVGFGII 375 (662)
Q Consensus 304 ~g-----~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~~~~~ll 375 (662)
.| +.++|...|.+..+.. +...+..|...|...+..++ +.+.+..... .+ +......+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g-------~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~---~g---~~~a~~~Lg 148 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG-------EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA---AG---YPEAGLAQV 148 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT-------CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH---HT---CTTHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---CC---CHHHHHHHH
Confidence 55 7789999999888864 44477778888887665444 4444444433 22 244566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-
Q 038801 376 SACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH---RTAEATQLVMDISSSGLQLDVGNYDALIEASITS- 451 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~- 451 (662)
..|...+.++++......+.+.....+...+..|...|.+.| +.++|.+.|++..+.| .++...+..+...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 778777755555444333333222233448888999999999 9999999999999987 33555556677777655
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC--
Q 038801 452 ---QDFQSAFSLFRDMREARIYDLKGSYLTIMTG-L--MENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG-- 523 (662)
Q Consensus 452 ---g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-- 523 (662)
+++++|...|++.. .| +...+..|... + ...++.++|..+|++..+. + +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCC
Confidence 79999999999987 33 44566666666 3 4688999999999998875 3 4556777887777 56
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHH
Q 038801 524 ---RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYAL 596 (662)
Q Consensus 524 ---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~ 596 (662)
++++|.+.|++.. .| +...+..|...|.. ..++++|...|++.. +.|. ......|...|
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-------~~g~---~~A~~~Lg~~y 364 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA-------RNGQ---NSADFAIAQLF 364 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH-------TTTC---TTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-------hhCh---HHHHHHHHHHH
Confidence 9999999999888 33 56677777777766 449999999999999 6664 33445566666
Q ss_pred Hc----cCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHH---hhhhhhhHHHHHHHHhhHHH
Q 038801 597 VK----GGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMEN---HKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 597 ~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~---~~~~~~a~~~~~~~~~l~p~ 651 (662)
.. ..+.++|..+++...+.|.. +.. ..+..+.. ..+++.+..+.++.++-.+.
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~-~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDTP-EAN-DLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCCH-HHH-HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCCH-HHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 53 56899999999999888854 222 22333322 24566677777666665443
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=4.4e-13 Score=128.35 Aligned_cols=247 Identities=9% Similarity=-0.083 Sum_probs=147.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 038801 343 NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (662)
.|++++|++.|+++.+..+..-+.+...+..+...+...|++++|...|+++.+.. +.+..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666665542111111133445556666666677777777666666653 34566667777777777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 038801 423 TQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED 502 (662)
Q Consensus 423 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 502 (662)
...|++..+.. ..+...+..+..+|...|++++|...|+++.+.. |+.......+..+...|+.++|...+.+....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777766652 1245666677777777777777777777776653 33233344444455567777777777666553
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccc
Q 038801 503 PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTD 577 (662)
Q Consensus 503 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 577 (662)
. .++...+ .++..+...++.++|.+.+++..+. .|+ ...|..+...|...|++++|...|+++.
T Consensus 174 ~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------ 242 (275)
T 1xnf_A 174 S--DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV------ 242 (275)
T ss_dssp S--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------
T ss_pred C--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Confidence 2 2222233 3566666677777777777777653 221 3567777788888888888888888887
Q ss_pred CCCCCcccHHHHHHHHHHHHccCchHHHHHHH
Q 038801 578 GQKGIKFEHNLVDAFLYALVKGGFFDAVMQVV 609 (662)
Q Consensus 578 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
...|+. +.....++...|++++|++.+
T Consensus 243 ---~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ---ANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---TTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred ---hCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 333432 222344566777777777665
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=7.7e-13 Score=121.44 Aligned_cols=91 Identities=11% Similarity=-0.066 Sum_probs=29.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHH
Q 038801 440 NYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAF 519 (662)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 519 (662)
.|..+..++...|++++|+..|++..+.. .+...+..+...+...|++++|...+++..+..+ .+...+..+...+
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~ 195 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP--KDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Confidence 33333334444444444444444443333 2333333333444444444444444444333211 1223344444444
Q ss_pred HhcCCHHHHHHHHHH
Q 038801 520 CKAGRLEDAKRTLRR 534 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~ 534 (662)
.+.|++++|.+.|++
T Consensus 196 ~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 196 LLKGKAEEAARAAAL 210 (217)
T ss_dssp TC-------------
T ss_pred HHccCHHHHHHHHHH
Confidence 444444444444443
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=2.3e-12 Score=123.12 Aligned_cols=242 Identities=12% Similarity=-0.002 Sum_probs=121.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHH
Q 038801 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIIS 376 (662)
Q Consensus 297 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~ 376 (662)
....+...|++++|...|.+.++..+. +...|..+..++...|++++|++.+++... .+.........|..+..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-----SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 334444445555555554444443211 233444444455555555555555554433 11000001112344455
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQ 455 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~ 455 (662)
.+...|++++|.+.|++..+.. +.+..++..+...|...|++++|...|++..+. .| +...|..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555432 233455555555666666666666666555544 22 3344444442223334666
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCccc------hhhHHHHHHHHHhcCCHH
Q 038801 456 SAFSLFRDMREARIYDLKGSYLTIMTGLMENHR---PELMAAFLDEVVEDPRVEVK------THDWNSIIHAFCKAGRLE 526 (662)
Q Consensus 456 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~ 526 (662)
+|...|+++.+.. +.+...+..+...+...++ .++|...+++..+.....|+ ..+|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 6666666665543 3333445555555555555 55555555555443212222 246777778888888888
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHH
Q 038801 527 DAKRTLRRMIFLQFEPND-QTYLSL 550 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p~~-~~~~~l 550 (662)
+|.+.|++..+. .|+. ..+..+
T Consensus 239 ~A~~~~~~al~~--~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHhc--CccHHHHHHHh
Confidence 888888888874 4543 344444
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=5.2e-12 Score=119.08 Aligned_cols=203 Identities=11% Similarity=-0.042 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
..+..+...+...|++++|...|+++.+.. ..+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445555566666666666666666665542 1245556666666666666666666666666553 33445566666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038801 484 MENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFS 562 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 562 (662)
...|++++|.++++++.+ .+..| +...+..+...|...|++++|.+.|+++.+.. ..+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665 12233 34567777777788888888888888777642 2245677777778888888888
Q ss_pred HHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 563 VLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 563 a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
|...++++. .. ...+...+..+...+.+.|++++|.++++++.+..+.
T Consensus 194 A~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFA-------QG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHH-------TT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHH-------Hh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 888888877 21 1224456667777777888888888888887665543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=2.4e-11 Score=116.06 Aligned_cols=228 Identities=10% Similarity=-0.022 Sum_probs=120.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASIT----SQDFQSAFSLFRDMREARIYDLKGSYLT 478 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 478 (662)
...+..+...|...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444555555555566666666665555521 33445555555555 556666666666555554 3345555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038801 479 IMTGLME----NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----AGRLEDAKRTLRRMIFLQFEPNDQTYLSL 550 (662)
Q Consensus 479 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 550 (662)
+...|.. .++.++|..+|++..+. + +...+..+...|.. .|++++|.+.|++..+.+ +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 5555555 55666666666555553 1 33445555555555 556666666666555543 34445555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHc----cCchHHHHHHHHHHHhCCCCCCHH
Q 038801 551 INGYVT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVK----GGFFDAVMQVVEKSQEMKVFVDKW 622 (662)
Q Consensus 551 i~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~ 622 (662)
...|.. .+++++|+..|++.. +.+ +...+..+...+.+ .|++++|.+.+++..+.+. ++.+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~-------~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~ 221 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKAC-------DLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGC 221 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHH-------HTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHH-------HCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHH
Confidence 555554 556666666665555 222 23444455555555 5666666666655555443 3333
Q ss_pred hHHHHHHHH----hhhhhhhHHHHHHHHhhHHHHHH
Q 038801 623 KYKQAFMEN----HKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 623 ~~~~~~~~~----~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
..+...+.. .++.+.|...++++.++.|.++.
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 333333333 45555566666666665555543
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=3.1e-13 Score=137.88 Aligned_cols=242 Identities=13% Similarity=-0.006 Sum_probs=146.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-Chhh
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNAC----G-CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS----GLQL-DVGN 440 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~ 440 (662)
+..+...+...|++++|...+++..+. + ......++..+...|...|++++|...|++..+. +-.+ ...+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 333444444444444444444444331 1 0112344555555556666666666655554432 1011 2335
Q ss_pred HHHHHHHHHcCCC-----------------HHHHHHHHHHHHHc----CC-CCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 441 YDALIEASITSQD-----------------FQSAFSLFRDMREA----RI-YDLKGSYLTIMTGLMENHRPELMAAFLDE 498 (662)
Q Consensus 441 ~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 498 (662)
+..+...|...|+ +++|...+++..+. +. +....++..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5555566666666 66666666655432 10 11223555666667777777777777766
Q ss_pred HhhCCCC----ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 499 VVEDPRV----EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE-PN----DQTYLSLINGYVTAEQYFSVLMMWHE 569 (662)
Q Consensus 499 ~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~ 569 (662)
..+...- .....++..+...|...|++++|.+.+++..+.... .+ ..++..+...|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5542111 111236888889999999999999999888763110 11 35788889999999999999999999
Q ss_pred HHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 570 IKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 570 m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
..+..+.. +..+ ...++..+..++.+.|++++|.+++++..+.
T Consensus 329 al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 329 HLAIAQEL---GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC---CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 98554421 2222 2357888889999999999999999998654
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=6.3e-12 Score=116.03 Aligned_cols=204 Identities=14% Similarity=-0.020 Sum_probs=122.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 482 (662)
...+..+...+...|++++|...|+++.+.. ..+...+..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3445555555666666666666666555542 1134555555666666666666666666665543 3344455555566
Q ss_pred HHhc-CCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038801 483 LMEN-HRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQY 560 (662)
Q Consensus 483 ~~~~-~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 560 (662)
+... |++++|...++++.+. +..| +...+..+..++...|++++|...++++.+.. ..+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 6666 6666666666665551 2222 24566677777777777777777777777642 22356777777777777777
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 561 FSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 561 ~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
++|...++++.+ ..-..+...+..+...+.+.|+.++|..+++.+.+..+
T Consensus 164 ~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQS-------RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHH-------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHH-------hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 777777777772 11112345556666666777777777777777765443
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=8.5e-12 Score=117.60 Aligned_cols=200 Identities=14% Similarity=0.049 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
..|..+...+...|++++|.+.|+++....+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP----SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 4455555556666666666666666554221 123345555566666666666666666665543 33455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRP 489 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 489 (662)
..|...|++++|.++|+++.+.+..| +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 66777777777777777666522233 34556666666777777777777777766654 33445566666666666666
Q ss_pred HHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038801 490 ELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 490 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (662)
++|...++++.+..+ .+...+..+...+...|+.++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGGG--QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666666655322 23445666677777777777777777777664
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=9.1e-13 Score=134.07 Aligned_cols=283 Identities=11% Similarity=-0.014 Sum_probs=186.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-Ch
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC----GCSV-GL 403 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 403 (662)
....+......+...|++++|...|+++....+.....-...+..+...+...|++++|...+++.... +..+ ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 444555556666666777777777666655322211101234555666666677777777766665432 1111 24
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCC--------------------HHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ-LD----VGNYDALIEASITSQD--------------------FQSAF 458 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~ 458 (662)
.++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 56667777777788888888777766543100 11 3467777777778888 88888
Q ss_pred HHHHHHHHc----C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CC-ccchhhHHHHHHHHHhcCCHHHHH
Q 038801 459 SLFRDMREA----R-IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP---RV-EVKTHDWNSIIHAFCKAGRLEDAK 529 (662)
Q Consensus 459 ~~~~~m~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~~li~~~~~~g~~~~A~ 529 (662)
..+++..+. + .+....++..+...+...|++++|...+++..+.. +. .....+|..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 887776542 1 11123457777788888888888888888766421 11 111347888899999999999999
Q ss_pred HHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchH
Q 038801 530 RTLRRMIFLQF-EPN----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFD 603 (662)
Q Consensus 530 ~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 603 (662)
..+++..+... .++ ..++..+...|...|++++|...+++..+..+. .+..+. ..++..+...+.+.|+++
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99998875310 112 357888899999999999999999999865442 222222 467888889999999999
Q ss_pred HHHHHHHHHHh
Q 038801 604 AVMQVVEKSQE 614 (662)
Q Consensus 604 ~A~~~~~~m~~ 614 (662)
+|.+.+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.47 E-value=2.9e-11 Score=124.22 Aligned_cols=378 Identities=11% Similarity=0.006 Sum_probs=245.0
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCCh---hHHHHHHHHHHhcCCCCCcccHH
Q 038801 184 LVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSV---SDAEKVIETMSVLGVRPNESSFG 260 (662)
Q Consensus 184 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~t~~ 260 (662)
+...+.+.|++++|.+.|++..+. + .++ .+..+-..+... |+. ++|++.|++..+. +...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-------g-~~~--A~~~Lg~~y~~~-g~~~d~~~A~~~~~~A~~~----~~~A~~ 73 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-------G-YSE--AQVGLADIQVGT-RDPAQIKQAEATYRAAADT----SPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------T-CCT--GGGTCC---------------------------------CHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-------C-CHH--HHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhC----CHHHHH
Confidence 455566789999999999998663 1 222 233333344444 777 8999999998753 555566
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChh---hHHHHHHHHHcCCCCCCCCCCHHH
Q 038801 261 FLAYLYALKG-----LQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLE---SASRTILLCLGGGNMEQSDFSKET 332 (662)
Q Consensus 261 ~li~~~~~~g-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~p~~~~ 332 (662)
.+...+...+ +.++|...|+...+.|. ++ .+..|...|...+..+ ++.+.+....+.. +...
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-------~~~a 143 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-------YPEA 143 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-------CTTH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-------CHHH
Confidence 6666455544 78899999999998763 32 6667777887766544 3444444443332 5667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCChhhHHHH
Q 038801 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG---LSDKAHSILDEMNACGCSVGLGVYVPT 409 (662)
Q Consensus 333 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l 409 (662)
+..+...|...+.++++.+......+ .-...+...+..+...|...| +.++|.+.|++..+.| .++...+..+
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~---~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICK---AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHH---HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 77888888888866655554333322 111123337778888888899 9999999999999988 5666666777
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-H--HcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 038801 410 LKAYCKE----HRTAEATQLVMDISSSGLQLDVGNYDALIEA-S--ITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTG 482 (662)
Q Consensus 410 i~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 482 (662)
...|... +++++|...|++.. . -+...+..+... + ...+++++|...|++..+.| +...+..|...
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL 292 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 7777665 79999999999987 3 256677777776 4 56899999999999999887 44567777777
Q ss_pred HHhcC-----CHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038801 483 LMENH-----RPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----AGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553 (662)
Q Consensus 483 ~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 553 (662)
|. .| +.++|..+|.+.. . + +...+..|...|.. ..+.++|...|++..+.|. | .....|...
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa-~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~ 363 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV-G-R---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQL 363 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT-T-T---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHH
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh-C-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHH
Confidence 76 55 8999999999987 2 3 44567777777766 3499999999999998763 3 345555666
Q ss_pred HHh----cCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 554 YVT----AEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 554 ~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
|.. ..+.++|..+|+... +.|......... .+......++.++|..+.++..+
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~-------~~g~~~a~~~l~-~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAK-------AQDTPEANDLAT-QLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHH-------TTCCHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHH-------HCCCHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHH
Confidence 654 468999999999999 677543222222 22333345567777777776543
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.1e-12 Score=129.56 Aligned_cols=277 Identities=12% Similarity=-0.009 Sum_probs=161.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCChhhHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC----GC-SVGLGVYVPTL 410 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li 410 (662)
....+...|++++|...|+++.+..+.....-...+..+...+...|++++|.+.+++..+. +. .....++..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 33444455555555555555544221110000233444455555555555555555544331 11 11234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCC--------------------HHHHHHHHHHHH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQ-LD----VGNYDALIEASITSQD--------------------FQSAFSLFRDMR 465 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 465 (662)
..|...|++++|...+++..+.... ++ ..++..+...|...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6666667777776666665432100 11 2355666666666666 667766666654
Q ss_pred Hc----C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCC---C-CccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 466 EA----R-IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDP---R-VEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 466 ~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
+. + .+.....+..+...+...|++++|...+++..+.. + ......++..+...|...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1 11112355566666777777777777777655321 1 11113367788888888999999999888877
Q ss_pred hCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHH
Q 038801 537 FLQF-EPN----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVE 610 (662)
Q Consensus 537 ~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 610 (662)
+... ..+ ..++..+...+...|++++|...++++.+..+.. +..+ ...++..+...+.+.|++++|.+.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL---KDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5210 111 3577788888888999999999998887544321 2122 23577778888889999999999998
Q ss_pred HHHhC
Q 038801 611 KSQEM 615 (662)
Q Consensus 611 ~m~~~ 615 (662)
++.+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87654
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.7e-12 Score=132.00 Aligned_cols=231 Identities=10% Similarity=-0.031 Sum_probs=144.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC----C-CCChhhHHHHHHHHHHcCC--------------------HHHHHHH
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNACG----C-SVGLGVYVPTLKAYCKEHR--------------------TAEATQL 425 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~-~~~~~~~~~li~~~~~~g~--------------------~~~A~~~ 425 (662)
+..+...+...|++++|...+++..+.. . .....++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 3334445555555555555555443321 0 0012355566666666666 6666666
Q ss_pred HHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CC----CcccHHHHHHHHHhcCCHHHHHHH
Q 038801 426 VMDISSS----GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARI-YD----LKGSYLTIMTGLMENHRPELMAAF 495 (662)
Q Consensus 426 ~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~ 495 (662)
+++..+. +..+ ...++..+...|...|++++|...+++..+... .+ ...++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 6654332 1111 134566667777777777777777777664311 01 112566677777788888888877
Q ss_pred HHHHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 038801 496 LDEVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPN-DQTYLSLINGYVTAEQYFSVLMM 566 (662)
Q Consensus 496 ~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~ 566 (662)
+++..+. .+..+ ...++..+...|...|++++|.+.+++..+. +-.+. ..++..+...|...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776542 11111 1457888999999999999999999988763 11111 35788899999999999999999
Q ss_pred HHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHH
Q 038801 567 WHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDA 604 (662)
Q Consensus 567 ~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 604 (662)
+++..+..+. .+..+. ..++..+...+...|+...
T Consensus 330 ~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 330 AEKHLEISRE---VGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHH---hcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9998865552 233333 3677777778877777643
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=1.7e-11 Score=113.19 Aligned_cols=208 Identities=10% Similarity=-0.001 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 408 (662)
+...|..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.++++.+.. +.+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 81 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHH
Confidence 3445666666666666666666666666543221 23445556666666666666666666666543 335566666
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 038801 409 TLKAYCKE-HRTAEATQLVMDISSSGLQLD-VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN 486 (662)
Q Consensus 409 li~~~~~~-g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 486 (662)
+...|... |++++|...++++.+.+..|+ ...+..+..++...|++++|...|+++.+.. +.+...+..+...+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 66777777 777777777777666222232 4556666667777777777777777766653 33445566666666666
Q ss_pred CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038801 487 HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ 545 (662)
Q Consensus 487 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 545 (662)
|++++|..++++..+..+ ..+...+..+...+...|+.+.|..+++.+.+. .|+..
T Consensus 161 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~ 216 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSE 216 (225)
T ss_dssp TCHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCH
Confidence 666666666666655311 023445566666666777777777777776643 45443
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.46 E-value=1.1e-11 Score=123.15 Aligned_cols=245 Identities=8% Similarity=-0.013 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL-SDKAHSILDEMNACGCSVGLGVYVPTL 410 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li 410 (662)
.|+.+...+.+.|++++|++.|+++..+.+. +...|..+..++...|+ +++|+..|++++... +.+...|..+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~----~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3444444455555555555555555443222 23334445555555554 666666665555543 33455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh-cCCH
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME-NHRP 489 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~ 489 (662)
.++.+.|++++|+..|+++.+.... +...|..+..++.+.|++++|+..|+++++.. +.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 6666666666666666666654211 45566666666666666666666666666654 4444566666666666 4443
Q ss_pred HHH-----HHHHHHHhhCCCCccchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---
Q 038801 490 ELM-----AAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG--RLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAE--- 558 (662)
Q Consensus 490 ~~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~--- 558 (662)
++| +..+++..+..+ -+...|+.+...+...| ++++|.+.++++ + ..| +...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P--~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP--HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccc
Confidence 555 366666655311 13557888888888877 689999999888 3 344 4578889999998864
Q ss_pred ------CHHHHHHHHHHH-HHhhcccCCCCCcccH-HHHHHHHHHHH
Q 038801 559 ------QYFSVLMMWHEI-KRKISTDGQKGIKFEH-NLVDAFLYALV 597 (662)
Q Consensus 559 ------~~~~a~~~~~~m-~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 597 (662)
..++|+++++++ . .+.|.. ..|..+...+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~---------~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAK---------EKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHH---------TTCGGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH---------HhCchhHHHHHHHHHHHH
Confidence 358999999999 6 455655 45555554443
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=1.9e-09 Score=114.51 Aligned_cols=437 Identities=8% Similarity=-0.044 Sum_probs=248.7
Q ss_pred CCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCc---HHHHHHHHHHHHHhhhhhhcCC
Q 038801 139 LLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSN---FVAFLKVFEECCRIALDENLDF 215 (662)
Q Consensus 139 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~ 215 (662)
+.|..++..++..+...+.++.+..+|+.+... .|....+....+..-.+.++ ++.+..+|++....
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~-------- 132 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK-------- 132 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS--------
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh--------
Confidence 357888999999998889999999999999985 46666666666666677888 99999999999762
Q ss_pred C--CccHHHHHHHHHHHhccCCCh--------hHHHHHHHHHHh-cCC-CCCc-ccHHHHHHHHH---------HcCCHH
Q 038801 216 M--KPNIYACNAALEGCCYGLQSV--------SDAEKVIETMSV-LGV-RPNE-SSFGFLAYLYA---------LKGLQE 273 (662)
Q Consensus 216 ~--~~~~~~~~~ll~~~~~~~~~~--------~~a~~~~~~m~~-~g~-~p~~-~t~~~li~~~~---------~~g~~~ 273 (662)
. .|++..|...+.-..+. ++. +.+.++|+.... .|. .++. ..|...+.-.. ..++++
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~-~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKK-NDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHH-SCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHh-cccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 2 38999998888766554 443 334577877544 466 5654 45555554332 234577
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038801 274 KIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLI 353 (662)
Q Consensus 274 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 353 (662)
.+..+|+.++......-..+|...... .+.-+...+.+++.+ ...+++.|...+
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~f-e~~~~~~~a~~~~~e-------------------------~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQW-EQDVNQLTARRHIGE-------------------------LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHH-HHHHCTTTHHHHHHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHH-HHhcCcchHHHHHHH-------------------------hhHHHHHHHHHH
Confidence 888899888863222122333322211 111001111111110 011222333333
Q ss_pred HHHHHhCCCCc----c-----------c-cc-------chHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCh
Q 038801 354 IEAQKLEPSGI----V-----------V-DR-------SVGFGIISACVNLG-------LSDKAHSILDEMNACGCSVGL 403 (662)
Q Consensus 354 ~~m~~~~~~~~----~-----------~-~~-------~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~ 403 (662)
.++..+.. ++ + | .. ..|...+.---..+ ..+.+..+|++.+.. ++-+.
T Consensus 266 ~e~~~~~~-~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 266 QDWLNITK-GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHTT-TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHH-hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 33322111 10 0 0 00 11111221111111 112344566666554 24466
Q ss_pred hhHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC----------CCC-
Q 038801 404 GVYVPTLKAYCKEHRTAEAT-QLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR----------IYD- 471 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~~- 471 (662)
..|-..+..+...|+.++|. .+|++.... +..+...|-..+...-+.|++++|.++|+++.+.. .+.
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 67777777777777777775 777777654 22344556666777777788888888887776531 111
Q ss_pred ----------CcccHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCccchhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCC
Q 038801 472 ----------LKGSYLTIMTGLMENHRPELMAAFLDEVVED-PRVEVKTHDWNSIIHAFCKA-GRLEDAKRTLRRMIFLQ 539 (662)
Q Consensus 472 ----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~ 539 (662)
....|...+....+.|..+.|..+|.+..+. ....+. .|-..+..-.+. ++.+.|.++|+..++.
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~--lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD--IYLENAYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 1124556666666667777777777777664 222222 232222222233 3477777777777764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc--cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 540 FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF--EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 540 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
+.-+...|...++.....|+.+.|..+|++.. .....+ ....|...+..-.+.|+.+.+.++.+++.+.-+
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal-------~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSI-------DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT-------TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 22234455566666666777777888777777 222211 235667777766777777777777777776666
Q ss_pred CCCHHhHH
Q 038801 618 FVDKWKYK 625 (662)
Q Consensus 618 ~p~~~~~~ 625 (662)
..+....+
T Consensus 573 ~~~~~~~f 580 (679)
T 4e6h_A 573 EVNKLEEF 580 (679)
T ss_dssp TCCHHHHH
T ss_pred CCcHHHHH
Confidence 54443333
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=1.7e-11 Score=121.88 Aligned_cols=251 Identities=7% Similarity=-0.042 Sum_probs=127.9
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC-hhhHHHHHHHHHcCCCCCCCCCCHHHHHHH
Q 038801 258 SFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGN-LESASRTILLCLGGGNMEQSDFSKETYCEV 336 (662)
Q Consensus 258 t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~l 336 (662)
.|..+...+...|++++|...++.+.+.. +-+..+|+.+..++...|+ +++|+..|.+.+...+. +...|+.+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-----~~~a~~~~ 172 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-----NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-----CHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-----CHHHHHHH
Confidence 34445555566666666666666666653 2335566666666666664 66666666666654322 45555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK- 415 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~- 415 (662)
..++...|++++|+..|+++.++.+. +...|..+..++...|++++|...|+++++.. +.+...|+.+..++.+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~----~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK----NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 55555556666666555555543322 23334444444555555555555555555443 2334444444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC--CHHHHH
Q 038801 416 EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENH--RPELMA 493 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~ 493 (662)
.|..++|. .+.++..|++.++.. |.+...|+.+...+...| +.++|.
T Consensus 248 ~~~~~eA~------------------------------~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 248 TGYNDRAV------------------------------LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp TCSCSHHH------------------------------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred cCcchHHH------------------------------HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 33323331 000024444444433 333344444444444444 345555
Q ss_pred HHHHHHhhCCCCccchhhHHHHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCCH-HHHHHHHHHHH
Q 038801 494 AFLDEVVEDPRVEVKTHDWNSIIHAFCKAG---------RLEDAKRTLRRM-IFLQFEPND-QTYLSLINGYV 555 (662)
Q Consensus 494 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~p~~-~~~~~li~~~~ 555 (662)
+.+.++ + ....+...+..+..+|.+.| ..++|.++|+++ .+ +.|.. ..|..+...+.
T Consensus 297 ~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 297 NQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 555554 2 11223455666666776653 247788888777 54 34544 35555544443
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=2.4e-12 Score=120.61 Aligned_cols=200 Identities=7% Similarity=0.001 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
|..+...+...|++++|...|+++.+.. ..+...+..+...+...|++++|...|+++.+.. +.+...+..+...+..
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 3333444444444444444444444321 1133344444444444444444444444444432 2233344444444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLM 565 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 565 (662)
.|++++|.++++++.+..+ .+...+..+...|...|++++|.+.++++.+.. ..+...+..+...+...|++++|+.
T Consensus 104 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555555554444443211 123455666666666777777777776666542 2245566666666777777777777
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 566 MWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.++++.. .. ..+..++..+..++.+.|++++|.+.++++.+..+.
T Consensus 181 ~~~~~~~-------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 181 QFAAVTE-------QD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHH-------HC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHH-------hC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 7776662 11 123456666666777777777777777776655443
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=4e-12 Score=119.07 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=115.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS 448 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 448 (662)
..+..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+.. ..+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 334445555555666666666666665543 3345566666666666666666666666665542 12455566666666
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHH
Q 038801 449 ITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDA 528 (662)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 528 (662)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+ .+...+..+...|...|++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE--NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666554 33445566666666666777777776666655322 2345677777777778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 529 KRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 529 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...|+++.+.. ..+..++..+..+|...|++++|...++++.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88887777642 2245677777777778888888888888777
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=2.9e-12 Score=130.64 Aligned_cols=278 Identities=9% Similarity=-0.051 Sum_probs=208.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-ChhhH
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNACGCSVGL----GVYVPTLKAYCKEHRTAEATQLVMDISSS----GLQL-DVGNY 441 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~ 441 (662)
+..+...+...|++++|...|+++.+.+ +.+. .++..+...|...|++++|...|++..+. +..+ ....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3345566777888888888888887763 2232 47888899999999999999999987653 1122 45678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcC-----CCCCcccHHHHHHHHHhcCC-----------------HHHHHHHHHHH
Q 038801 442 DALIEASITSQDFQSAFSLFRDMREAR-----IYDLKGSYLTIMTGLMENHR-----------------PELMAAFLDEV 499 (662)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~ 499 (662)
..+...|...|++++|...+++..+.. .+....++..+...+...|+ +++|.+.+.+.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 888999999999999999999887642 12234578888889999999 99999998886
Q ss_pred hhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 500 VED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF-EPN----DQTYLSLINGYVTAEQYFSVLMMWHEI 570 (662)
Q Consensus 500 ~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m 570 (662)
.+. .+..+ ...++..+...|...|++++|.+.+++..+..- .++ ...+..+...|...|++++|+..+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 11112 245788899999999999999999999886310 112 237888999999999999999999999
Q ss_pred HHhhcccCCCCCc-ccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-------CCHHhHHHHHHHHhhhhhhhHHHH
Q 038801 571 KRKISTDGQKGIK-FEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-------VDKWKYKQAFMENHKKLKVAKLRK 642 (662)
Q Consensus 571 ~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-------p~~~~~~~~~~~~~~~~~~a~~~~ 642 (662)
.+..+.. +.. ....++..+...+...|++++|.+++++..+.... +..+..+...+...|+.+.|...+
T Consensus 290 l~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 290 LALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 8655421 222 22467888999999999999999999998654221 124445566667789999999999
Q ss_pred HHHHhhHHHH
Q 038801 643 RNFKKMEALI 652 (662)
Q Consensus 643 ~~~~~l~p~~ 652 (662)
++++++.+..
T Consensus 367 ~~al~~~~~~ 376 (411)
T 4a1s_A 367 EQHLQLAXXX 376 (411)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHHHHhhc
Confidence 9998875443
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=2.3e-09 Score=113.81 Aligned_cols=443 Identities=8% Similarity=-0.019 Sum_probs=288.8
Q ss_pred chhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCC-
Q 038801 158 AAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQS- 236 (662)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~- 236 (662)
..+.+..|++.+... |.+......++..+.+.+.++.+..+|+++... .+.+...|...+..-.+. ++
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--------fP~~~~lW~~Yi~~E~~~-~~~ 116 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--------FPLMANIWCMRLSLEFDK-MEE 116 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTC---C
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHhh-CCc
Confidence 445555666666543 566666777888888889999999999999874 666778888888888876 88
Q ss_pred --hhHHHHHHHHHHhcC-CCCCcccHHHHHHHHHHcCCH--------HHHHHHHHHHHh-cCC-CCc-HHhHHHHHHHHH
Q 038801 237 --VSDAEKVIETMSVLG-VRPNESSFGFLAYLYALKGLQ--------EKIVELESLMNE-FGF-SSQ-MVFYSSLISGYV 302 (662)
Q Consensus 237 --~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~ 302 (662)
++.+..+|++..... ..|+...|...+.-..+.++. +.+.++|+.... .|. .++ ...|...+....
T Consensus 117 ~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~ 196 (679)
T 4e6h_A 117 LDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLE 196 (679)
T ss_dssp CCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 999999999987653 137777777666655554443 345577777654 365 454 467777776543
Q ss_pred h---------cCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHH
Q 038801 303 K---------LGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFG 373 (662)
Q Consensus 303 ~---------~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ 373 (662)
. .++++.+..+|.+.+.- +...-..+|..... +.+.-+...+.+++.+.
T Consensus 197 ~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~----------------- 254 (679)
T 4e6h_A 197 HWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL----------------- 254 (679)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHTTS----CCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH-----------------
T ss_pred hccccCcHHHHhHHHHHHHHHHHHHhC----ccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh-----------------
Confidence 2 34567788888777742 11111223322211 11110111122221111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH--CCC----C-----------C--C------hhhHHHHHHHHHHcC-------CHHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNA--CGC----S-----------V--G------LGVYVPTLKAYCKEH-------RTAE 421 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~--~~~----~-----------~--~------~~~~~~li~~~~~~g-------~~~~ 421 (662)
..+++.|...+.++.. .++ + | + ...|...+..--..+ ..+.
T Consensus 255 -------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~R 327 (679)
T 4e6h_A 255 -------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKAR 327 (679)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHH
Confidence 1233334444443321 111 1 1 0 134444443322222 1344
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH-HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038801 422 ATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF-SLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVV 500 (662)
Q Consensus 422 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 500 (662)
+..+|++..... .-+...|...+..+...|+.++|. .+|++.... .|.+...+...+......|+++.|..+|+++.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 567788887763 336778888888888889999997 999999875 35555567778888889999999999999987
Q ss_pred hCCC--------Ccc------------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-cC
Q 038801 501 EDPR--------VEV------------KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL-QFEPNDQTYLSLINGYVT-AE 558 (662)
Q Consensus 501 ~~~~--------~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~-~~ 558 (662)
.... -.| ...+|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+ .+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 6310 012 2346888888888999999999999999875 2 1122333322222223 35
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC----CCHHhHHHHHHHHhhh
Q 038801 559 QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF----VDKWKYKQAFMENHKK 634 (662)
Q Consensus 559 ~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~~~~~~~~~ 634 (662)
+.+.|.++|+...+.+ .-+...+...+......|+.+.|..+|++....... .+.|...+.+=..+|+
T Consensus 485 d~e~Ar~ife~~Lk~~--------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp CCHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHC--------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 6999999999999422 224456678888888899999999999999877663 2477777888888999
Q ss_pred hhhhHHHHHHHHhhHHH
Q 038801 635 LKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 635 ~~~a~~~~~~~~~l~p~ 651 (662)
.+.+.++.+++.+..|.
T Consensus 557 ~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp SHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999998876
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=1.8e-11 Score=120.71 Aligned_cols=276 Identities=9% Similarity=-0.017 Sum_probs=206.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-ChhhHH
Q 038801 372 FGIISACVNLGLSDKAHSILDEMNACGCSVG----LGVYVPTLKAYCKEHRTAEATQLVMDISSS----GLQL-DVGNYD 442 (662)
Q Consensus 372 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~ 442 (662)
......+...|++++|...|+++.+.. +.+ ...+..+...|...|++++|...+++..+. +..+ ....+.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 345667888999999999999998864 223 467888999999999999999999886543 2122 356788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----cccHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARI-YDL----KGSYLTIMTGLMENHR--------------------PELMAAFLD 497 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~ 497 (662)
.+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 889999999999999999998875421 111 2377788889999999 999999988
Q ss_pred HHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038801 498 EVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF-EPN----DQTYLSLINGYVTAEQYFSVLMMWH 568 (662)
Q Consensus 498 ~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~ 568 (662)
+.... .+..+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76532 11112 245788889999999999999999998875310 112 2378888999999999999999999
Q ss_pred HHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-------CCHHhHHHHHHHHhhhhhhhHH
Q 038801 569 EIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-------VDKWKYKQAFMENHKKLKVAKL 640 (662)
Q Consensus 569 ~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-------p~~~~~~~~~~~~~~~~~~a~~ 640 (662)
+.....+. .+..+. ..++..+...+...|++++|...++++.+.... ...+..+...+...|+.+.|..
T Consensus 248 ~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 248 KTLLLARQ---LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHh---hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99865442 222222 467788889999999999999999988654221 2244455666777899999999
Q ss_pred HHHHHHhhHHH
Q 038801 641 RKRNFKKMEAL 651 (662)
Q Consensus 641 ~~~~~~~l~p~ 651 (662)
.+++++++.+.
T Consensus 325 ~~~~a~~~~~~ 335 (338)
T 3ro2_A 325 FAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=2.4e-11 Score=122.55 Aligned_cols=235 Identities=10% Similarity=0.005 Sum_probs=169.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC------CCCcccHH
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSS----GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARI------YDLKGSYL 477 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~~~~ 477 (662)
....+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|...+++..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677888999999999888764 1111 245778888888889999999998888775321 11134677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHH
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPND-QTYL 548 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~ 548 (662)
.+...|...|++++|...+++..+. .+..+ ...++..+..+|...|++++|.+.|++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7788888999999999988887642 11111 1347888999999999999999999988872 222443 6888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc---hHHHHHHHHHHHhCCCCC---CHH
Q 038801 549 SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF---FDAVMQVVEKSQEMKVFV---DKW 622 (662)
Q Consensus 549 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p---~~~ 622 (662)
.+...+...|++++|...+++..+..+.. +-......+..+...+...|+ +++|+.++++. +..| +.+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 99999999999999999999988544321 222222346678888889998 77777777775 3333 345
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHhhH
Q 038801 623 KYKQAFMENHKKLKVAKLRKRNFKKME 649 (662)
Q Consensus 623 ~~~~~~~~~~~~~~~a~~~~~~~~~l~ 649 (662)
..+...+...|+.+.|...+++++++.
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 555667777899999999999888765
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=1.5e-10 Score=112.58 Aligned_cols=219 Identities=10% Similarity=0.039 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-------cCCH-------HHHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCK-------EHRT-------AEATQLVMDISSSGLQL-DVGNYDALIEASI 449 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~ 449 (662)
++|..+|++.+... +.+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 67778888888753 5567778877777753 4775 8888888888873 134 4567888888888
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCC-cc-cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH-hcCCHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDL-KG-SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC-KAGRLE 526 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~ 526 (662)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|+.++|..+|++..+..+. +...|........ ..|+.+
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC--CTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCHH
Confidence 888899999998888874 333 33 6888888888888888888888888875332 2334443333322 268888
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC-CCccc--HHHHHHHHHHHHccCch
Q 038801 527 DAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK-GIKFE--HNLVDAFLYALVKGGFF 602 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~ 602 (662)
+|.++|++..+. .| +...|..++..+.+.|++++|..+|++.. .. .+.|+ ...|..++..+.+.|+.
T Consensus 187 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-------~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 187 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL-------TSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH-------HSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------hccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 888888888764 34 45678888888888888888888888888 43 24553 46777778888888888
Q ss_pred HHHHHHHHHHHhCCCC
Q 038801 603 DAVMQVVEKSQEMKVF 618 (662)
Q Consensus 603 ~~A~~~~~~m~~~~~~ 618 (662)
++|..+++++.+..+.
T Consensus 258 ~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 258 ASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHccc
Confidence 8888888888766554
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=4.3e-11 Score=120.65 Aligned_cols=231 Identities=7% Similarity=-0.013 Sum_probs=172.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-----ChhhHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNAC----GCSV-GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ-L-----DVGNYD 442 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-----~~~~~~ 442 (662)
....+...|++++|...+++..+. +-.+ ...++..+..+|...|++++|...+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667889999999999998774 2111 3467888899999999999999999887653111 1 235788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCC-ccchhhHH
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREARI-----YDLKGSYLTIMTGLMENHRPELMAAFLDEVVED---PRV-EVKTHDWN 513 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~p~~~~~~ 513 (662)
.+...|...|++++|...|++..+... +....++..+...|...|++++|...+++..+- .+. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999998875421 111247888889999999999999999987661 122 22356789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 514 SIIHAFCKAGRLEDAKRTLRRMIFLQF---EPN-DQTYLSLINGYVTAEQ---YFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
.+...|.+.|++++|...+++..+..- .|. ...+..+...+...|+ +++|+.++++.. ..|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~----------~~~~~ 338 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM----------LYADL 338 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----------CHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----------CHHHH
Confidence 999999999999999999998876310 122 2346778888888888 677777766443 3333
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
...+..+...+.+.|++++|.+++++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36778899999999999999999998754
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=7.4e-12 Score=122.11 Aligned_cols=254 Identities=11% Similarity=0.061 Sum_probs=131.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCC
Q 038801 369 SVGFGIISACVNLGLSDKAHSILDEMNAC-------GCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS------GLQ 435 (662)
Q Consensus 369 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~ 435 (662)
.++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++..+. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34445555666666666666666665552 11223345555555666666666666666555432 111
Q ss_pred C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 436 L-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 436 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
| ....+..+...|...|++++|...|+++.+.. ..... .........+..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~-~~~~~~~~~~~~ 158 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLG-KDHPDVAKQLNN 158 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcC-CCChHHHHHHHH
Confidence 1 23445555555555555555555555544321 00000 011123455777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc---
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFL------QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF--- 584 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p--- 584 (662)
+...|...|++++|.+.++++.+. +-.|+. .++..+...|...|++++|...++++.+..+........+
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 777778888888888888777763 213322 4677777888888888888888888774432210001111
Q ss_pred ----cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 585 ----EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 585 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
....+..+...+...+.+.+|...++......+. +..+..+...+...|+.+.|...+++++++.|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122333333444566666666667666443322 335555566667778888888888888887653
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=7.1e-10 Score=107.79 Aligned_cols=217 Identities=14% Similarity=0.101 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHhCCCCccccc-chHH
Q 038801 308 ESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQ-------NGNV-------KGLANLIIEAQKLEPSGIVVDR-SVGF 372 (662)
Q Consensus 308 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~~~~~~~~~~-~~~~ 372 (662)
++|..+|.+.+...+. +...|..++..+.. .|+. ++|..+|++..+ .+.|+. ..|.
T Consensus 33 ~~a~~~~~~al~~~p~-----~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~----~~~p~~~~~~~ 103 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-----HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS----TLLKKNMLLYF 103 (308)
T ss_dssp HHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHT----TTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHH----HhCcccHHHHH
Confidence 5666677777764322 66777777766653 3554 666666666543 123332 2444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-H
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVG-LG-VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEAS-I 449 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-~ 449 (662)
.++..+...|++++|.++|+++++. .|+ .. +|..++..+.+.|++++|..+|++..+... .+...|....... .
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~ 180 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYY 180 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 5555556666666666666666553 222 22 555555556666666666666666555421 1222232222111 1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--chhhHHHHHHHHHhcCCHHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV--KTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~ 527 (662)
..|++++|..+|++..+.. |.+...+..++..+.+.|+.++|..+|++........| ....|..++..+.+.|+.+.
T Consensus 181 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 181 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2455555555555554432 22333344444444444444444444444443211122 12234444444444444444
Q ss_pred HHHHHHHHHh
Q 038801 528 AKRTLRRMIF 537 (662)
Q Consensus 528 A~~~~~~m~~ 537 (662)
|..+++++.+
T Consensus 260 a~~~~~~a~~ 269 (308)
T 2ond_A 260 ILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=9.1e-12 Score=121.46 Aligned_cols=249 Identities=10% Similarity=0.011 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CcccccchHHHHHHHHHhcCChHHHHHHHHHHHHC------C
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPS----GIVVDRSVGFGIISACVNLGLSDKAHSILDEMNAC------G 398 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~ 398 (662)
+..++..+...+...|++++|..+|+++.++... ........+..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4568899999999999999999999999863211 12233456677889999999999999999998764 2
Q ss_pred C-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 038801 399 C-SVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS------GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIY 470 (662)
Q Consensus 399 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 470 (662)
. +....++..+...|...|++++|...|++..+. +..| ....+..+...+...|++++|..+|+++.+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 183 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY-- 183 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--
Confidence 2 334678889999999999999999999998764 2222 34567778888888888888888888776541
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC
Q 038801 471 DLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL-------QFEPN 543 (662)
Q Consensus 471 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~ 543 (662)
..... ........++..+...|...|++++|.+.++++.+. ...+.
T Consensus 184 --------------------------~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 184 --------------------------QTKLG-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp --------------------------HHTSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred --------------------------HHHhC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 00000 001112345677777777778888888877777752 11121
Q ss_pred H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 544 D-------QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 544 ~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
. ..+..+...+...+.+.++...++... ...| +..++..+..++.+.|++++|.+++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK---------VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC---------CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 122222333334455566666666655 2233 3478888999999999999999999987653
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=2.5e-10 Score=101.57 Aligned_cols=164 Identities=9% Similarity=0.028 Sum_probs=118.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 038801 402 GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481 (662)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 481 (662)
+..+|..+...|.+.|++++|.+.|++..+... -+...|..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 455677777777777777777777777766531 155667777777777777777777777776654 344455666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 038801 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQY 560 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~ 560 (662)
.+...++.+.+...+.+.....+ -+...+..+..+|.+.|++++|++.|++..+. .| +...|..+..+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT--VYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 77777777777777777666422 23456777888888888888888888888875 44 456788888888888888
Q ss_pred HHHHHHHHHHH
Q 038801 561 FSVLMMWHEIK 571 (662)
Q Consensus 561 ~~a~~~~~~m~ 571 (662)
++|++.|++..
T Consensus 158 ~~A~~~~~~al 168 (184)
T 3vtx_A 158 DEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888887
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=1e-10 Score=121.01 Aligned_cols=211 Identities=9% Similarity=0.064 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 038801 419 TAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF-QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLD 497 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 497 (662)
++++...+++..... ..+...+..+..+|...|++ ++|++.|++..+.. +.+...+..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555666666655442 22566777777778888888 88888888877765 4556677788888888888888888888
Q ss_pred HHhhCCCCccchhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc--------CC
Q 038801 498 EVVEDPRVEVKTHDWNSIIHAFCKA---------GRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTA--------EQ 559 (662)
Q Consensus 498 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~--------~~ 559 (662)
+..+. .|+...+..+...|... |++++|.+.|++..+. .| +...|..+..+|... |+
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 87764 35567788888888888 9999999999999985 45 467899999999988 99
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcc----cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhh
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIKF----EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKK 634 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~ 634 (662)
+++|++.|++..+ +.| +...|..+..++.+.|++++|.+.++++.+..+. +..+..+...+...|+
T Consensus 237 ~~~A~~~~~~al~---------~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 237 SQQALSAYAQAEK---------VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHHHHH---------HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999993 344 5688999999999999999999999999877655 4456666666777788
Q ss_pred hhhhHHHHHHH
Q 038801 635 LKVAKLRKRNF 645 (662)
Q Consensus 635 ~~~a~~~~~~~ 645 (662)
.+.|...++++
T Consensus 308 ~~eAi~~~~~~ 318 (474)
T 4abn_A 308 LTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 88877655444
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=1.8e-10 Score=102.52 Aligned_cols=170 Identities=13% Similarity=0.093 Sum_probs=84.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
+...|..+...|.+.|++++|+..|++..+.. |.+.. +|..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~------------------------------------~~~~la 46 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVE------------------------------------TLLKLG 46 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH------------------------------------HHHHHH
Confidence 34455555566666666666666666555543 33333 444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHH
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYA 595 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~ 595 (662)
.+|.+.|++++|...++...... .-+...+..+...+...++++.|...+++... ..| +...+..+..+
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~---------~~~~~~~~~~~lg~~ 116 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIA---------LNTVYADAYYKLGLV 116 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCccchHHHHHHHHH
Confidence 55555555555555555554431 11233444444455555555555555555541 122 23444455555
Q ss_pred HHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 596 LVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
+.+.|++++|++.++++.+.++. ++.+..+...+...|+.+.|...++++++++|.++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 117 YDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 55555555555555555444332 33344444444445555555555555555555543
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=3.8e-10 Score=113.36 Aligned_cols=228 Identities=10% Similarity=0.036 Sum_probs=151.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CC-ChhhHH
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGC-SV----GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGL-----QL-DVGNYD 442 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~-~~~~~~ 442 (662)
....+...|++++|...|++..+... .+ ...++..+..+|...|+++.|...+++..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456678899999999888876421 12 245777888888889999999888887654311 11 245677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcC--C---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCccchhhH
Q 038801 443 ALIEASITSQDFQSAFSLFRDMREAR--I---YDLKGSYLTIMTGLMENHRPELMAAFLDEVVE-----DPRVEVKTHDW 512 (662)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~--~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~p~~~~~ 512 (662)
.+..+|...|++++|.+.|++..+.. . .....++..+...+...|++++|...+++..+ .. .....++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHH
Confidence 78888888899999998888876531 1 11124566677777788888888888877665 31 1125567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQF---EPN-DQTYLSLINGYVTAEQ---YFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
..+...|.+.|++++|...+++..+..- .|. ...+..+...+...++ +.+|+.++++.. ..|+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~----------~~~~ 334 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN----------LHAY 334 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT----------CHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC----------ChhH
Confidence 7777888888888888888887776311 122 2345555556666666 666666665422 2233
Q ss_pred -HHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 586 -HNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 586 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
...+..+...+.+.|++++|.+.++++.
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3556677777888888888888887764
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.5e-09 Score=108.87 Aligned_cols=307 Identities=13% Similarity=0.028 Sum_probs=192.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc--ccchHHHH
Q 038801 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVV--DRSVGFGI 374 (662)
Q Consensus 297 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~~~~l 374 (662)
....+...|++++|...+.+.+...+..........++.+...+...|++++|.+.+++...+.+..-.+ ...++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777766666543110000001245556666777778888777777765432211111 11223456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----ChhhHHH
Q 038801 375 ISACVNLGLSDKAHSILDEMNAC----GCS--V-GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL----DVGNYDA 443 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~ 443 (662)
...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66777888888888888877552 221 2 23456667788888999999999998876542221 2345777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCc-ccHH-----HHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--chhhHHHH
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLK-GSYL-----TIMTGLMENHRPELMAAFLDEVVEDPRVEV--KTHDWNSI 515 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l 515 (662)
+...+...|++++|...+++.......+.. ..+. ..+..+...|+.++|..++.+........+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 788888899999999999988754212111 1122 222347788999999999988765422111 12246777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFL----QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++.....+. .|
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~---~g--------- 327 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR---TG--------- 327 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HC---------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc---cc---------
Confidence 88899999999999999988652 212222 36677788888999999999999998844331 11
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.+..+...| +....+++.+....+.
T Consensus 328 -~~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 328 -FISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp -CCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred -HHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 112233444 5566666666555544
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=1.5e-10 Score=119.81 Aligned_cols=213 Identities=8% Similarity=-0.092 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 038801 346 VKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLS-DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQ 424 (662)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (662)
++++++.+++... ..+.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+
T Consensus 84 ~~~al~~l~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLG----SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHT----TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhc----cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666665543 2223555677788888899999 99999999998864 4567899999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcC---------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc--------C
Q 038801 425 LVMDISSSGLQLDVGNYDALIEASITS---------QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMEN--------H 487 (662)
Q Consensus 425 ~~~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--------~ 487 (662)
.|++..+. .|+...+..+...|... |++++|+..|++..+.. +.+...+..+..+|... |
T Consensus 159 ~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 99999987 57778888899999999 99999999999999875 56677888899999888 9
Q ss_pred CHHHHHHHHHHHhhCCC-CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 038801 488 RPELMAAFLDEVVEDPR-VEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLM 565 (662)
Q Consensus 488 ~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~ 565 (662)
++++|...|++..+..+ ..-+...|..+..+|...|++++|.+.|++..+. .|+ ...+..+..++...|++++|++
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887422 0125678999999999999999999999999875 454 4678888899999999999887
Q ss_pred HHH
Q 038801 566 MWH 568 (662)
Q Consensus 566 ~~~ 568 (662)
.+.
T Consensus 314 ~~~ 316 (474)
T 4abn_A 314 SKG 316 (474)
T ss_dssp HTT
T ss_pred Hhc
Confidence 654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=6e-10 Score=111.93 Aligned_cols=237 Identities=11% Similarity=-0.016 Sum_probs=177.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CC----CCccc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSSGLQ-L----DVGNYDALIEASITSQDFQSAFSLFRDMREAR--IY----DLKGS 475 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~----~~~~~ 475 (662)
......+...|++++|...|++..+.... + ...++..+...|...|++++|...+++..+.. .. ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 34455677899999999999998765211 2 24578888999999999999999999887532 11 12456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCC-HH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVED---PRVE-VKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF-----LQFEPN-DQ 545 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~-~~ 545 (662)
++.+...|...|++++|.+.+++..+. .+.. ....++..+..+|...|++++|.+.|++..+ . .|+ ..
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~ 262 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPK 262 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHH
Confidence 778889999999999999999887652 1111 1245788899999999999999999999987 4 233 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc---hHHHHHHHHHHHhCCCCC---
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF---FDAVMQVVEKSQEMKVFV--- 619 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p--- 619 (662)
++..+...+.+.|++++|...+++..+..+. .+.......+..+...+...|+ +++|+.++++ .+..|
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~ 336 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITA---RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIE 336 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT---TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHH
Confidence 8889999999999999999999999965542 2222233456667777778888 7788888776 33333
Q ss_pred CHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 620 DKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
+.+..+...+...|+.+.|...+++++++...
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34444566667789999999999999887643
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=1.4e-09 Score=109.02 Aligned_cols=279 Identities=9% Similarity=-0.030 Sum_probs=196.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----hhhH
Q 038801 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSDKAHSILDEMNACGC-SVG----LGVY 406 (662)
Q Consensus 333 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~ 406 (662)
+......+...|++++|...+++.....+.+-.. -...+..+...+...|++++|.+.+++.....- ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556778999999999999987633211000 011345566778889999999999998765311 111 2346
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC--C--Cccc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSS----GLQ--L-DVGNYDALIEASITSQDFQSAFSLFRDMREARIY--D--LKGS 475 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~--~~~~ 475 (662)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788899999999999999987653 221 2 2345667888899999999999999998865321 1 2245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN-----SIIHAFCKAGRLEDAKRTLRRMIFLQFEPN---DQTY 547 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~ 547 (662)
+..+...+...|++++|...+++.............+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77778889999999999999998764211111111122 233457799999999999999886432211 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 548 LSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 548 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
..+...+...|++++|...+++.....+ ..+..++. ..+..+..++...|+.++|...+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENAR---SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7788889999999999999999885544 23333343 3677778889999999999999998754
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=5e-10 Score=107.22 Aligned_cols=208 Identities=11% Similarity=0.068 Sum_probs=114.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-------
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSS------GLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREAR------- 468 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------- 468 (662)
..++..+...|...|++++|...|++..+. +-.| ...++..+...|...|++++|...|++..+..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345555555566666666666665555433 1112 23455556666666666666666666655431
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVED------PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL---- 538 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 538 (662)
.+....++..+...+...|++++|..++++..+. ........++..+...|...|++++|.+.++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1222345555556666666666666666665442 011223567888888899999999999999888762
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCC-Ccc-cHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 539 ---QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKG-IKF-EHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 539 ---~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
...+.. ..|..+...+...+....+.. +.++..... ..+ ..| ...++..+..++.+.|++++|..++++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYK---ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC----------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122222 234334333333332222222 222221111 111 223 3367888999999999999999999987
Q ss_pred Hh
Q 038801 613 QE 614 (662)
Q Consensus 613 ~~ 614 (662)
.+
T Consensus 279 l~ 280 (283)
T 3edt_B 279 SR 280 (283)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.12 E-value=3.6e-09 Score=93.84 Aligned_cols=163 Identities=13% Similarity=0.086 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 484 (662)
.+..+...+...|++++|...|+++.+.. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44445555556666666666666555432 1244555556666666666666666666665553 334455566666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038801 485 ENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVL 564 (662)
Q Consensus 485 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 564 (662)
..|++++|.+.++++.+..+ .+...+..+...+...|++++|.+.++++.+.. ..+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666655322 244567778888888888888888888887753 235578888888888888888888
Q ss_pred HHHHHHHH
Q 038801 565 MMWHEIKR 572 (662)
Q Consensus 565 ~~~~~m~~ 572 (662)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888874
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.12 E-value=5e-09 Score=96.73 Aligned_cols=192 Identities=13% Similarity=-0.039 Sum_probs=145.7
Q ss_pred ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038801 367 DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIE 446 (662)
Q Consensus 367 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 446 (662)
|...+......+...|++++|...|++.++..-.++...+..+..++...|++++|...|++..+.... +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445677788888999999999999999988763367777777899999999999999999999886322 5678888999
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc---hhhHHHHH
Q 038801 447 ASITSQDFQSAFSLFRDMREARIYDLK-------GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK---THDWNSII 516 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 516 (662)
+|...|++++|...|++..+.. |.+. ..|..+...+...|++++|+..+++..+. .|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence 9999999999999999998875 3444 44777778888899999999999998874 333 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.+|...| ..+++++...+ ..+...|..... ...+.+++|+..+++..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 7775544 44556665543 334455544433 34577899999999998
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.11 E-value=7.1e-09 Score=91.90 Aligned_cols=163 Identities=14% Similarity=0.066 Sum_probs=82.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHH
Q 038801 293 FYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGF 372 (662)
Q Consensus 293 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~ 372 (662)
.+..+...+...|++++|...|.+.++..+ .+...+..+...+...|++++|.+.++++.+..+ .+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~ 80 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-----FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP----DNVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCHHHHH
Confidence 344455555555666666555544443321 1344555555555555555555555555544211 1233344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
.+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...+++..+.. ..+...+..+...+...|
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 44455555555555555555554432 3344455555555555555555555555555442 113445555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 038801 453 DFQSAFSLFRDMRE 466 (662)
Q Consensus 453 ~~~~A~~~~~~m~~ 466 (662)
++++|...+++..+
T Consensus 159 ~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 159 RHEEALPHFKKANE 172 (186)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.10 E-value=1.6e-09 Score=116.49 Aligned_cols=164 Identities=9% Similarity=0.067 Sum_probs=127.3
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
+...|+.|...|.+.|++++|++.|++.++.. +.+...+..+...|.+.|++++|+..|++..+..+ -+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 45778888888889999999999998888875 55667788888888888888888888888776421 1356788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHH
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLY 594 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~ 594 (662)
.+|.+.|++++|++.|++.++. .|+ ...|+.+..+|...|++++|++.|++.. .+.|+ ...+..+..
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al---------~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTAL---------KLKPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCSCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCChHHHhhhhh
Confidence 8888888888888888888774 454 4678888888888888888888888887 34454 367777888
Q ss_pred HHHccCchHHHHHHHHHHHh
Q 038801 595 ALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~ 614 (662)
++...|++++|.+.++++.+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 88888888888888877754
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=1.5e-08 Score=93.59 Aligned_cols=198 Identities=11% Similarity=0.046 Sum_probs=128.5
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
|...+......+...|++++|...|++..+...+++...+..+...+...|++++|+..+++..+..+- +...|..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN--LANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc--hHHHHHHHH
Confidence 344555555556666666666666666665542244445555566666666666666666666553221 345677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc---
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFLQFEPN-D-------QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE--- 585 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--- 585 (662)
.+|...|++++|.+.|++..+. .|+ . ..|..+...+...|++++|++.|+++. .+.|+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---------~~~p~~~~ 152 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---------DVTSKKWK 152 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---------TSSCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---------hcCCCccc
Confidence 8888888888888888888874 443 3 357777778888899999999999888 44565
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
...+..+..++...|+ .+++++...+.. +...+........+.++.|...++++++++|.+.
T Consensus 153 ~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 153 TDALYSLGVLFYNNGA-----DVLRKATPLASS-NKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHGGGTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 3666777777765543 445555444322 2333334445556778888888899988888643
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.07 E-value=5.2e-09 Score=112.61 Aligned_cols=164 Identities=11% Similarity=-0.054 Sum_probs=102.6
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccch
Q 038801 291 MVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSV 370 (662)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (662)
..+|+.|...|.+.|++++|++.|.+.++..+. +...|+.+..+|.+.|++++|++.|++..++.+. +...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----~~~a 79 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT----FADA 79 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHH
Confidence 455666666666666666666666666654322 4556666666666666666666666666554332 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 038801 371 GFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASI 449 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~ 449 (662)
|..+..++...|++++|.+.|++.++.. +-+...|+.+..+|.+.|++++|++.|++..+. .| +...|..+..+|.
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHH
Confidence 5566666666666666666666666643 344566667777777777777777777776665 33 4556666777777
Q ss_pred cCCCHHHHHHHHHHHHH
Q 038801 450 TSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~ 466 (662)
..|++++|.+.+++..+
T Consensus 157 ~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HTTCCTTHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 77777777666666543
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.04 E-value=1.7e-08 Score=94.98 Aligned_cols=184 Identities=10% Similarity=-0.006 Sum_probs=130.2
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 457 AFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 457 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
|+..|++..+.+ +++..++..+..++...|++++|.+++.+........-+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777777655 4444556677788888888888888888876542212356678888999999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHH
Q 038801 537 FLQFEP-----NDQTYLSLINGYV--TAE--QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQ 607 (662)
Q Consensus 537 ~~~~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
+. .| +..+...|..++. ..| ++.+|..+|+++. + -.|+..+...++.++.+.|++++|.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~-------~--~~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS-------Q--TFPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH-------T--TSCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-------H--hCCCcccHHHHHHHHHHcCCHHHHHH
Confidence 74 67 3556666666633 334 8999999999998 2 33543333444558889999999999
Q ss_pred HHHHHHhCC----------C-CCCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 038801 608 VVEKSQEMK----------V-FVDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 608 ~~~~m~~~~----------~-~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
.++.+.+.. + .|+....++......|+ .+.+..+++.++.|...+
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 999776531 1 24444343444455565 788999999998876553
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.04 E-value=2.5e-09 Score=102.23 Aligned_cols=174 Identities=10% Similarity=0.056 Sum_probs=120.1
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCC
Q 038801 474 GSYLTIMTGLMENHRPELMAAFLDEVVED------PRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL------QFE 541 (662)
Q Consensus 474 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~ 541 (662)
.++..+...+...|++++|...+++..+. ........+|..+...|...|++++|.+.|++..+. .-.
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444455555555555555444332 111223567888999999999999999999988864 112
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCC---
Q 038801 542 PN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMK--- 616 (662)
Q Consensus 542 p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--- 616 (662)
|+ ..++..+...|...|++++|+..++++.+....... +..| ...++..+..++.+.|++++|.++++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG-PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 33 368889999999999999999999999854332111 1133 34788889999999999999999999886530
Q ss_pred --------------------------------------------CCC---CHHhHHHHHHHHhhhhhhhHHHHHHHHhh
Q 038801 617 --------------------------------------------VFV---DKWKYKQAFMENHKKLKVAKLRKRNFKKM 648 (662)
Q Consensus 617 --------------------------------------------~~p---~~~~~~~~~~~~~~~~~~a~~~~~~~~~l 648 (662)
..| ..+..+...+...|+.+.|...+++++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 112 23444466667789999999999888765
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=3e-08 Score=95.37 Aligned_cols=193 Identities=12% Similarity=-0.013 Sum_probs=128.7
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---C--ChhhHHHHHH
Q 038801 377 ACVNLGLSDKAHSILDEMNAC----GCSVG-LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ---L--DVGNYDALIE 446 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~--~~~~~~~li~ 446 (662)
.+...|++++|...|.+..+. |..++ ..+|+.+..+|.+.|++++|...|++..+.... + -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455567777777666665442 21111 456777777888888888888877776543110 1 1346777888
Q ss_pred HHHcC-CCHHHHHHHHHHHHHcCCCC-C----cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccch-----hhHHHH
Q 038801 447 ASITS-QDFQSAFSLFRDMREARIYD-L----KGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKT-----HDWNSI 515 (662)
Q Consensus 447 ~~~~~-g~~~~A~~~~~~m~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l 515 (662)
.|... |++++|+..|++..+..... + ..++..+...+...|++++|...|++..+..+-.+.. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88998888888877642111 1 2457778888889999999999999888753222222 156778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ------TYLSLINGYV--TAEQYFSVLMMWHEIK 571 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~--~~~~~~~a~~~~~~m~ 571 (662)
..++...|++++|...|++..+ +.|+.. .+..++.+|. ..+++++|+..|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 8889999999999999999886 345432 3445566664 3577888888887665
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=4.4e-08 Score=94.14 Aligned_cols=201 Identities=10% Similarity=0.015 Sum_probs=140.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC-Ccccc-cchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChhhHHHH
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPS-GIVVD-RSVGFGIISACVNLGLSDKAHSILDEMNAC----GCSV-GLGVYVPT 409 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l 409 (662)
...|...|++++|.+.|++...+.+. +-.++ ..+|+.+..+|...|++++|...+++.++. |-.. -..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44677788888888888877653221 11111 456777888888899999999888887653 2111 13578888
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc------cHH
Q 038801 410 LKAYCKE-HRTAEATQLVMDISSSGLQL-D----VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG------SYL 477 (662)
Q Consensus 410 i~~~~~~-g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~ 477 (662)
..+|... |++++|...|++..+..... + ..+++.+...+.+.|++++|+..|++..+........ .|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 99999999999887641110 1 3568888999999999999999999999865322221 467
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccch---hhHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVEDPRVEVKT---HDWNSIIHAFC--KAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 537 (662)
.+..++...|++++|...+++..+..+..++. ..+..++.+|. ..+++++|++.|+++..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 77788999999999999999987632222221 13445566664 45678888888877763
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=5.4e-08 Score=91.87 Aligned_cols=182 Identities=12% Similarity=0.054 Sum_probs=121.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-ChhhHH
Q 038801 368 RSVGFGIISACVNLGLSDKAHSILDEMNACGCSVG---LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ-L-DVGNYD 442 (662)
Q Consensus 368 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~ 442 (662)
...+..+...+...|++++|...|+++++.. +.+ ...+..+..+|.+.|++++|...|++..+.... | ....+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445556677777888888888888887753 223 566777777888888888888888887775221 1 134556
Q ss_pred HHHHHHHc--------CCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 443 ALIEASIT--------SQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 443 ~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
.+..++.. .|++++|...|++..+.. |.+...... ...+..+... ....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a--------------~~~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDA--------------TQKIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHH--------------HHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHH--------------HHHHHHHHHH-----HHHHHHH
Confidence 66667777 778888888888777653 222211111 1111111110 0112466
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPN----DQTYLSLINGYVTA----------EQYFSVLMMWHEIKR 572 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~ 572 (662)
+...|.+.|++++|...|+++++. .|+ ...+..+..+|... |++++|+..|+++.+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 788899999999999999999875 454 35777788888765 899999999999994
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=4.2e-07 Score=85.53 Aligned_cols=253 Identities=9% Similarity=0.010 Sum_probs=160.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 038801 338 KGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH 417 (662)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (662)
+-..-.|++..++.-. .++.+ ..++ ....-+.+++...|++... ..-.|.......+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~--~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~ 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSK--VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSC--CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT
T ss_pred HHHHHhhHHHHHHHHH---HhcCc--cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc
Confidence 3344567777776632 22211 1111 1222345777777776531 112333333333333 33322
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCHHHHHHHH
Q 038801 418 RTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARI-YDLKGSYLTIMTGLMENHRPELMAAFL 496 (662)
Q Consensus 418 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 496 (662)
|...|++..+.+ .++..++..+..++...|++++|++++.+.++.+- ..+...+..++..+.+.|+.+.|.+.+
T Consensus 85 ----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 677788777654 34555566788888889999999999988876653 245567788888999999999999999
Q ss_pred HHHhhCCCCcc-----chhhHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038801 497 DEVVEDPRVEV-----KTHDWNSIIHAF--CKAG--RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMW 567 (662)
Q Consensus 497 ~~~~~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 567 (662)
++|.+. .| +..+...|..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.+
T Consensus 160 ~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 160 DNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 998763 34 244555666563 3334 899999999999875 576444455555888999999999999
Q ss_pred HHHHHhhcccC-CCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 568 HEIKRKISTDG-QKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 568 ~~m~~~~~~~~-~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+.+.+..+... +.+..| +..++..++......|+ +|.++++++.+..+.
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 98773221100 000124 44666455555555676 899999999887765
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.87 E-value=7.2e-08 Score=91.02 Aligned_cols=194 Identities=13% Similarity=0.011 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChhh
Q 038801 328 FSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGC--SVGLGV 405 (662)
Q Consensus 328 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~ 405 (662)
.+...+..+...+.+.|++++|++.|+++....+.. ......+..+..++...|++++|...|++.++..- +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356778888899999999999999999997633221 00134666788899999999999999999998631 122456
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccH
Q 038801 406 YVPTLKAYCK--------EHRTAEATQLVMDISSSGLQLDV-GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSY 476 (662)
Q Consensus 406 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 476 (662)
+..+..++.+ .|++++|...|+++.+. .|+. .....+.. +..+... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 7778888988 99999999999999886 4443 22222111 0000000 00124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCH
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKA----------GRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
..+...+.+.|++++|+..|+++.+..+-.+ ....+..+..+|... |++++|...|+++.+. .|+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 5556667777777777777777766433222 234566677777655 7888888888888874 4554
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=7.3e-08 Score=87.29 Aligned_cols=127 Identities=10% Similarity=0.010 Sum_probs=84.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 038801 479 IMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTA 557 (662)
Q Consensus 479 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 557 (662)
+...+.+.|++++|+..|++..+..+ -+...|..+..+|...|++++|...|++.++. .|+ ...|..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP--NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 66677777777777777777766422 23567788888888888888888888888874 454 46777777777655
Q ss_pred CC--HHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 558 EQ--YFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 558 ~~--~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
|+ .+.+...++... ...|....+.....++...|++++|+..+++..+..+.
T Consensus 136 ~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS---------SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC------------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHh---------CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 43 334444444443 22333334444566677788888898888888766554
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.83 E-value=1.6e-05 Score=81.92 Aligned_cols=101 Identities=11% Similarity=-0.086 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCC-C
Q 038801 158 AAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQ-S 236 (662)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~ 236 (662)
++.|..+|+.+...- |. |+++.+..+|++... ..|++..|...+.-..+. + .
T Consensus 11 i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~---------~~ps~~LW~~Y~~f~~~~-~~~ 63 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLK---------KSYNLDLWMLYIEYVRKV-SQK 63 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHST---------TCCCHHHHHHHHHHHHHH-C--
T ss_pred hHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhc---------cCCCHHHHHHHHHHHHHh-Cch
Confidence 667777777776521 11 678888888888755 457888888777766665 4 3
Q ss_pred hhHHHHHHHHHHhc-CCCC-CcccHHHHHHHHH----HcCCHHHHHHHHHHHHhc
Q 038801 237 VSDAEKVIETMSVL-GVRP-NESSFGFLAYLYA----LKGLQEKIVELESLMNEF 285 (662)
Q Consensus 237 ~~~a~~~~~~m~~~-g~~p-~~~t~~~li~~~~----~~g~~~~a~~~~~~~~~~ 285 (662)
.+....+|+..... |..| +...|...+.-+. ..|+.+.+..+|+.....
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 45566777776543 4333 3334444443322 235567777788777763
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.82 E-value=1.4e-07 Score=78.34 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
+..+...+...|++++|..+|+++.+.+. .+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 33444444455555555555555444321 133444444444445555555555555444432 2222233333333333
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
.|++++|..+++++.+..+ .+...+..+...+.+.|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3333333333333332111 112234444444444444444444444444
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.81 E-value=2e-07 Score=77.28 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK 411 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 411 (662)
.|..+...+...|++++|.++++++.+..+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC----cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 455666666666666666666666654321 123344455555666666666666666665543 334455555666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
.+...|++++|...++++.+.. ..+...+..+...+.+.|++++|...++++.+.
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666666655542 113445555556666666666666666655543
No 97
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=7.2e-08 Score=93.42 Aligned_cols=232 Identities=8% Similarity=-0.008 Sum_probs=140.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 038801 343 NGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEA 422 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (662)
.|++++|.+++++..+..+.++ +...++++.|...|.+. ...|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~-------------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSF-------------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS-------------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHccccc-------------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 4566777777777654222110 00135666666666554 3456667777777
Q ss_pred HHHHHHHHhCCC----CC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CC--CcccHHHHHHHHHhcCCHHHH
Q 038801 423 TQLVMDISSSGL----QL-DVGNYDALIEASITSQDFQSAFSLFRDMREARI---YD--LKGSYLTIMTGLMENHRPELM 492 (662)
Q Consensus 423 ~~~~~~m~~~g~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a 492 (662)
...|.+..+... .. -..+|+.+...|...|++++|+..|++..+... .+ ...++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 777766544311 00 134666777777777888888877777654311 11 12456666667766 888888
Q ss_pred HHHHHHHhhCC---CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 038801 493 AAFLDEVVEDP---RVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPND-QTYLSLINGYVTAEQYFSV 563 (662)
Q Consensus 493 ~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~~~~~~a 563 (662)
+..+++..+.. +... ...+++.+...|.+.|++++|+..|++..+. +..+.. ..+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 88887765421 1111 1356788888899999999999999888762 111112 2566677777778999999
Q ss_pred HHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHH
Q 038801 564 LMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQV 608 (662)
Q Consensus 564 ~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
+..|++.. ..+ .............++.++ ..|+.+.+.++
T Consensus 215 ~~~~~~al-~~p---~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIP---GFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TST---TSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCC---CCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99998877 322 111111223455556555 56777666653
No 98
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=3.5e-06 Score=86.82 Aligned_cols=205 Identities=9% Similarity=-0.098 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 420 AEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEV 499 (662)
Q Consensus 420 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 499 (662)
+.+..+|+++.... ..+...|...+.-+.+.|+.++|..+|++.... |.+...+. .|....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 45677899888753 335778888888888999999999999999988 44432222 22222111111 2222
Q ss_pred hhCC-----------CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 038801 500 VEDP-----------RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT-AEQYFSVLMMW 567 (662)
Q Consensus 500 ~~~~-----------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~ 567 (662)
.+.. ........|...+..+.+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2110 00112346777777777888999999999999 321 2244444322221122 24799999999
Q ss_pred HHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhhhhhhHHHHHHHHh
Q 038801 568 HEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 568 ~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 647 (662)
+...+.++ - +...+...+....+.|+.+.|..+++++.+ ....|...+.+=..+|+.+.+++++++.+.
T Consensus 344 e~al~~~~------~--~~~~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKHP------D--STLLKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHCT------T--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCC------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99984221 1 234456677777889999999999999732 245777777777888999999988877765
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.77 E-value=2.5e-07 Score=83.76 Aligned_cols=121 Identities=4% Similarity=0.010 Sum_probs=71.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG 523 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 523 (662)
+..+|.+.|++++|...|++..+.. |.+...+..+...+...|++++|...|++..+..+- +...|..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--NLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHh
Confidence 5666666777777777777666654 445566666666777777777777777776653221 2445666666665544
Q ss_pred C--HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 524 R--LEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 524 ~--~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+ .+.+...++... .|+. ..+..+..++...|++++|+..|++..
T Consensus 137 ~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 137 EQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3 334444554443 3333 233344455556677777887777777
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=1.9e-07 Score=90.39 Aligned_cols=206 Identities=9% Similarity=-0.034 Sum_probs=150.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK-EHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFS 459 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 459 (662)
.|++++|.+++++..+.. +.. +.+ .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 467788888888776532 111 112 47888888888765 456778899999999
Q ss_pred HHHHHHHcCC-----CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHH
Q 038801 460 LFRDMREARI-----YDLKGSYLTIMTGLMENHRPELMAAFLDEVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKR 530 (662)
Q Consensus 460 ~~~~m~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 530 (662)
.|.+..+... .....+|+.+...|...|++++|...+++..+- .+-.. ...+++.+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9998875421 111347888888999999999999999986542 12111 24578888899988 99999999
Q ss_pred HHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHH
Q 038801 531 TLRRMIFLQFEP-N----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDA 604 (662)
Q Consensus 531 ~~~~m~~~~~~p-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 604 (662)
.|++..+..-.. + ..++..+...|...|++++|+..|++..+..+. .+..+.. ..+..++.++...|++++
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE---MENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 999988631110 1 357888999999999999999999999965542 2223333 366777778888999999
Q ss_pred HHHHHHHHHhCCC
Q 038801 605 VMQVVEKSQEMKV 617 (662)
Q Consensus 605 A~~~~~~m~~~~~ 617 (662)
|...+++.. ..+
T Consensus 214 A~~~~~~al-~~p 225 (307)
T 2ifu_A 214 AQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHT-TST
T ss_pred HHHHHHHHh-CCC
Confidence 999999997 543
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.77 E-value=4e-07 Score=83.58 Aligned_cols=191 Identities=10% Similarity=-0.041 Sum_probs=117.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc---cH
Q 038801 402 GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL--DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG---SY 476 (662)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~ 476 (662)
+...+..+...+.+.|++++|...|+++.+..... ....+..+..+|.+.|++++|...|++..+.. |.+.. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 34456667778899999999999999998763221 12467778889999999999999999998864 22221 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----------
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ----------- 545 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------- 545 (662)
..+..++...+.. .+ ..|..+...+...|++++|...|+++++. .|+..
T Consensus 82 ~~~g~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH
Confidence 4444444432100 00 00111122222334444444444444432 23221
Q ss_pred -------HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 546 -------TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 546 -------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
....+...|.+.|++++|+..|+++.+..+ +.......+..+..++.+.|+.++|.+.++.+...++.
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP-----DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc-----CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 113456677888999999999999984322 11112256778888999999999999999988776654
No 102
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.75 E-value=2.3e-06 Score=82.09 Aligned_cols=171 Identities=9% Similarity=0.017 Sum_probs=118.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCc-----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--cc--hh
Q 038801 440 NYDALIEASITSQDFQSAFSLFRDMREARIYDLK-----GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVE--VK--TH 510 (662)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p~--~~ 510 (662)
.+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+..... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566667777777777777776664321110 123334455667778888888887766431111 11 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFL-QFEPN-----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF 584 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 584 (662)
+|+.+...|...|++++|...|++..+. ...|+ ..+|..+...|...|++++|+..+++..+..+. .+...
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~---~~~~~ 233 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMA 233 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTBCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh---cCcHH
Confidence 7899999999999999999999998731 01222 258889999999999999999999999854432 12222
Q ss_pred -cHHHHHHHHHHHHccCchHHH-HHHHHHHH
Q 038801 585 -EHNLVDAFLYALVKGGFFDAV-MQVVEKSQ 613 (662)
Q Consensus 585 -~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 613 (662)
-..+|..+..++.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 257888899999999999999 77788763
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.74 E-value=6.6e-07 Score=82.09 Aligned_cols=205 Identities=12% Similarity=0.051 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh---hh
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGL---GV 405 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~ 405 (662)
+...+..+...+.+.|++++|+..|+++....+.+. .....+..+..++.+.|++++|...|+++++.. +.+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHH
Confidence 445566666677777777777777777765322211 011244556667777777777777777776643 1111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLME 485 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 485 (662)
+..+..++.+.|.. .+ ..|..+...+...|++++|...|+++++.. |.+.........
T Consensus 81 ~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~---- 138 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKR---- 138 (225)
T ss_dssp HHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHH----
T ss_pred HHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHH----
Confidence 33333334332210 00 011122233344567777777777777653 222222211100
Q ss_pred cCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 038801 486 NHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYF 561 (662)
Q Consensus 486 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~ 561 (662)
...+...+. ...-.+...|.+.|++++|...|+++++. .|+. ..+..+..++.+.|+++
T Consensus 139 ------l~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 139 ------LVFLKDRLA---------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp ------HHHHHHHHH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred ------HHHHHHHHH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcH
Confidence 000000000 01234556677778888888888777764 4442 35667777777778888
Q ss_pred HHHHHHHHHHHhh
Q 038801 562 SVLMMWHEIKRKI 574 (662)
Q Consensus 562 ~a~~~~~~m~~~~ 574 (662)
+|++.++.+....
T Consensus 202 ~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 202 QAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhC
Confidence 8887777666443
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=1.2e-07 Score=83.36 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISS 431 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 431 (662)
....+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 3334444455555555554444322 22344444455555555555555555554433
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=1.8e-07 Score=101.23 Aligned_cols=172 Identities=13% Similarity=0.001 Sum_probs=143.5
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 038801 379 VNLGLSDKAHSILDEMN--------ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASI 449 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~ 449 (662)
...|++++|.+.+++.. +.. +.+...+..+..+|.+.|++++|.+.|++..+. .| +...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 77899999999999998 432 556788889999999999999999999999886 34 6778899999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAK 529 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (662)
..|++++|...|++..+.. +.+...+..+...+.+.|++++ ++.|++..+..+- +...|..+..+|.+.|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG--VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc--hHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999886 5667889999999999999999 9999998874222 4567899999999999999999
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC
Q 038801 530 RTLRRMIFLQFEPND-QTYLSLINGYVTAEQ 559 (662)
Q Consensus 530 ~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~ 559 (662)
+.|++..+. .|+. ..|..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999874 6775 577778888766555
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.71 E-value=1.4e-06 Score=78.89 Aligned_cols=173 Identities=11% Similarity=0.029 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC----CHHHHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ----DFQSAFSLF 461 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 461 (662)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677776654 56677777777888888888888888887764 56667777777776 5 788888888
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCc-cchhhHHHHHHHHHh----cCCHHHHHHHH
Q 038801 462 RDMREARIYDLKGSYLTIMTGLME----NHRPELMAAFLDEVVEDPRVE-VKTHDWNSIIHAFCK----AGRLEDAKRTL 532 (662)
Q Consensus 462 ~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~ 532 (662)
++..+.| +...+..|...|.. .++.++|..+|++..+. +.. .+...+..|...|.. .++.++|...|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8887765 33456666666766 77888888888888775 221 125577888888888 78999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHH
Q 038801 533 RRMIFLQFEPNDQTYLSLINGYVTA-E-----QYFSVLMMWHEIK 571 (662)
Q Consensus 533 ~~m~~~~~~p~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~ 571 (662)
++..+. ..+...+..|...|... | ++++|+..|++..
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 999875 23445677777777653 3 8999999999888
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2e-07 Score=100.87 Aligned_cols=173 Identities=9% Similarity=0.017 Sum_probs=113.7
Q ss_pred HHcCCHHHHHHHHHHHH--------hcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Q 038801 267 ALKGLQEKIVELESLMN--------EFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVK 338 (662)
Q Consensus 267 ~~~g~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~ 338 (662)
...|++++|.+.++... +.. +.+...+..+...|...|++++|.+.|.+.++..+. +...|..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-----RWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-----CHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-----hHHHHHHHHH
Confidence 56677777777777776 321 334566777777777777777777777777765322 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC
Q 038801 339 GFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR 418 (662)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 418 (662)
++...|++++|++.|++..++.+. +...+..+..++...|++++ .+.|++..+.+ +.+...|..+..+|.+.|+
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~P~----~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTFPG----ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGD 549 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT----CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCC
Confidence 777777777777777777654433 34456667777777777777 77777777654 4456677777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCC
Q 038801 419 TAEATQLVMDISSSGLQLD-VGNYDALIEASITSQD 453 (662)
Q Consensus 419 ~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~ 453 (662)
+++|.+.|++..+. .|+ ...|..+..++...|+
T Consensus 550 ~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 550 RVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 77777777776654 343 4555556666655444
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=3.1e-07 Score=87.86 Aligned_cols=158 Identities=8% Similarity=-0.022 Sum_probs=72.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHcC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDAL-IEASITS 451 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~ 451 (662)
.+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++++... .|+....... ...+...
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhh
Confidence 34444455555555555555555442 334445555555555555555555555555443 2332211111 1123344
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
++.++|...|++..+.. |.+...+..+...+...|++++|...+.++.+..+-..+...+..++..|...|+.++|...
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 44455555555554443 33344444444455555555555555544444322222233444444555555555444444
Q ss_pred HHH
Q 038801 532 LRR 534 (662)
Q Consensus 532 ~~~ 534 (662)
|++
T Consensus 278 ~r~ 280 (287)
T 3qou_A 278 YRR 280 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=2.8e-07 Score=80.92 Aligned_cols=156 Identities=12% Similarity=0.112 Sum_probs=72.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHH-HHhc
Q 038801 444 LIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHA-FCKA 522 (662)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 522 (662)
+...+.+.|++++|...|++..+.. |.+...+..+...+...|++++|...+++.....+ +...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHHHHHHHHHHHHhh
Confidence 3344444455555555554444332 22333444444444444444444444444433211 11111111111 1111
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccC
Q 038801 523 GRLEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGG 600 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 600 (662)
++..+|...+++..+. .|+ ...+..+..++...|++++|+..|+++. ...-.+ +...+..+..++...|
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNIL-------KVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------TTCTTTTTTHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH-------HhCcccChHHHHHHHHHHHHHhC
Confidence 2223355566665553 343 4556666666666666666666666666 222111 1335555666666666
Q ss_pred chHHHHHHHHHH
Q 038801 601 FFDAVMQVVEKS 612 (662)
Q Consensus 601 ~~~~A~~~~~~m 612 (662)
+.++|...+++.
T Consensus 159 ~~~~A~~~y~~a 170 (176)
T 2r5s_A 159 QGNAIASKYRRQ 170 (176)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 666666666554
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.66 E-value=1.2e-05 Score=76.46 Aligned_cols=218 Identities=7% Similarity=-0.046 Sum_probs=137.8
Q ss_pred hhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH----Hhc
Q 038801 308 ESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNG--NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC----VNL 381 (662)
Q Consensus 308 ~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~----~~~ 381 (662)
++|++++..++.-.+. +...|+.--..+...| ++++++++++.+....++ +..+++.--..+ ...
T Consensus 50 ~~aL~~t~~~L~~nP~-----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk----~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 50 ERALHITELGINELAS-----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK----NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT----CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcH-----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc----cHHHHHHHHHHHHHHHHhc
Confidence 4566665555554322 4455665555566666 677777777776653333 222333321122 333
Q ss_pred ---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC---
Q 038801 382 ---GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA--EATQLVMDISSSGLQLDVGNYDALIEASITSQD--- 453 (662)
Q Consensus 382 ---~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--- 453 (662)
++++++.++++.+.+.. +-|-.+|+.-..++.+.|+++ ++++.++++.+.... |...|+.....+.+.|+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 67778888888887764 556777777777777777777 888888888876433 66777777767766666
Q ss_pred ---HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH-HHHHHHHHhhCC-CCccchhhHHHHHHHHHhcCCHHHH
Q 038801 454 ---FQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL-MAAFLDEVVEDP-RVEVKTHDWNSIIHAFCKAGRLEDA 528 (662)
Q Consensus 454 ---~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A 528 (662)
++++++.+++++... +.+...|+.+-..+.+.|+... +..+..++.... .-..+...+..+...|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 778888888877765 5566677777777777666433 444555544321 0122456677777777777788888
Q ss_pred HHHHHHHHh
Q 038801 529 KRTLRRMIF 537 (662)
Q Consensus 529 ~~~~~~m~~ 537 (662)
.++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877765
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=5.5e-06 Score=79.43 Aligned_cols=166 Identities=9% Similarity=0.007 Sum_probs=114.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCC-CCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc----hhhHHHH
Q 038801 445 IEASITSQDFQSAFSLFRDMREARI-YDLK----GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK----THDWNSI 515 (662)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 515 (662)
+..+...|++++|..++++..+... .++. ..+..+...+...+++++|...+++..+.....++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777776665321 1111 12223444555566777777777776653122222 3368999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIF----L-QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNL 588 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~ 588 (662)
...|...|++++|...|+++.+ . +..+.. .+|..+...|.+.|++++|+..+++..+..+. .+..+. ..+
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~---~~~~~~~~~~ 238 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR---INSMALIGQL 238 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTBCTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---cCcHHHHHHH
Confidence 9999999999999999999884 1 222222 48889999999999999999999999865542 233333 478
Q ss_pred HHHHHHHHHccCc-hHHHHHHHHHHH
Q 038801 589 VDAFLYALVKGGF-FDAVMQVVEKSQ 613 (662)
Q Consensus 589 ~~~l~~~~~~~g~-~~~A~~~~~~m~ 613 (662)
|..+..++.+.|+ +++|.+.++++.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8899999999995 699999998874
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.64 E-value=8.2e-07 Score=84.86 Aligned_cols=166 Identities=10% Similarity=-0.041 Sum_probs=114.4
Q ss_pred CcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccccc
Q 038801 289 SQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDR 368 (662)
Q Consensus 289 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 368 (662)
.+...+..+...+...|++++|...|.+.+...+. +...+..+...+.+.|++++|...++++.. ..|+.
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-----~~p~~ 184 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-----NGEIGLLLAETLIALNRSEDAEAVLXTIPL-----QDQDT 184 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-----GGCSH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-----chhHHHHHHHHHHHCCCHHHHHHHHHhCch-----hhcch
Confidence 34555666777777788888888887777766433 566777777888888888888888876543 23333
Q ss_pred chHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHH
Q 038801 369 SVGFG-IISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIE 446 (662)
Q Consensus 369 ~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~ 446 (662)
..... ....+...++.++|...+++..... +.+...+..+...|...|++++|...|.++.+..... +...+..++.
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 22222 2233556667777788887777764 5567778888888888888888888888887763221 2567778888
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 038801 447 ASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~ 465 (662)
.|...|+.++|...|++..
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 8888888888887777654
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.63 E-value=1.8e-06 Score=78.17 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC----CHHHHHHHH
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENH----RPELMAAFL 496 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~ 496 (662)
+|...|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + +.++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 55556666666666666666666666666554 22334444444444 3 455555555
Q ss_pred HHHhhCCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh----cCCHHHHHH
Q 038801 497 DEVVEDPRVEVKTHDWNSIIHAFCK----AGRLEDAKRTLRRMIFLQFEPN---DQTYLSLINGYVT----AEQYFSVLM 565 (662)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~----~~~~~~a~~ 565 (662)
++..+. + +...+..|...|.. .+++++|.+.|++..+.| |+ ...+..|...|.. .+++++|+.
T Consensus 77 ~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 77 EKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 555432 1 22334444444443 445555555555555432 21 3455555555555 445555555
Q ss_pred HHHHHH
Q 038801 566 MWHEIK 571 (662)
Q Consensus 566 ~~~~m~ 571 (662)
.|++..
T Consensus 151 ~~~~A~ 156 (212)
T 3rjv_A 151 YFKGSS 156 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.62 E-value=6.4e-07 Score=95.11 Aligned_cols=153 Identities=11% Similarity=-0.038 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+..+ .+...|..+..+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44445555555444432 22334444455555555555555555555544211 1244566666666666777777777
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHcc---CchHHHH
Q 038801 532 LRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKG---GFFDAVM 606 (662)
Q Consensus 532 ~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~ 606 (662)
|++..+. .| +...+..+..++...|++++|++.+++..+ ..| +...+..+..++... |++++|.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------~~p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---------LLPEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 7666654 33 345666666666667777777777776662 223 235556666666666 6777777
Q ss_pred HHHHHHHhCCCC
Q 038801 607 QVVEKSQEMKVF 618 (662)
Q Consensus 607 ~~~~~m~~~~~~ 618 (662)
+.+++..+.++.
T Consensus 149 ~~~~~al~~~p~ 160 (568)
T 2vsy_A 149 AQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHhcCCc
Confidence 777666655544
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=8.8e-07 Score=94.04 Aligned_cols=154 Identities=10% Similarity=0.000 Sum_probs=95.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038801 269 KGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKG 348 (662)
Q Consensus 269 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 348 (662)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|.+.++..+. +...|..+...|...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-----HPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-----CHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHH
Confidence 366777777777776653 334677777777888888888888887777765432 56677777777788888888
Q ss_pred HHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc---CCHHHHHHH
Q 038801 349 LANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE---HRTAEATQL 425 (662)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~ 425 (662)
|.+.|++..++.+. +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.
T Consensus 76 A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 76 AAVLLQQASDAAPE----HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 88888777654322 34456667777777777777777777777654 34566777777777777 777777777
Q ss_pred HHHHHhCC
Q 038801 426 VMDISSSG 433 (662)
Q Consensus 426 ~~~m~~~g 433 (662)
+++..+.+
T Consensus 151 ~~~al~~~ 158 (568)
T 2vsy_A 151 VRAAVAQG 158 (568)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 77777653
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=6.2e-06 Score=78.42 Aligned_cols=216 Identities=7% Similarity=0.004 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----HcC---CCHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH--RTAEATQLVMDISSSGLQLDVGNYDALIEAS----ITS---QDFQ 455 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~~ 455 (662)
++|.+.++.++..+ +-+..+|+.--.++...| ++++++++++.+.....+ +...|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45666666666543 334445555555555555 666666666666654222 344454444333 333 4556
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC------HHH
Q 038801 456 SAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPE--LMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR------LED 527 (662)
Q Consensus 456 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 527 (662)
+++.+++++.+.. +-+...|+.-.-.+.+.|..+ ++.++++++.+... -|...|+.....+.+.|+ +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~--~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL--KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666665543 333344444444444445444 55555555554311 133344444444444443 555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhhcccCCCC--CcccHHHHHHHHHHHHccCchHH
Q 038801 528 AKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFS-VLMMWHEIKRKISTDGQKG--IKFEHNLVDAFLYALVKGGFFDA 604 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 604 (662)
+++.+++++... .-|...|+-+...+.+.|+..+ +..+.+++. +.+ -..+...+..+..++.+.|+.++
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV-------DLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE-------EGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH-------hccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 555555555532 1133455555555555555332 223333333 111 01133444445555555555555
Q ss_pred HHHHHHHHH
Q 038801 605 VMQVVEKSQ 613 (662)
Q Consensus 605 A~~~~~~m~ 613 (662)
|.++++.+.
T Consensus 277 A~~~~~~l~ 285 (306)
T 3dra_A 277 SRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=5e-06 Score=79.76 Aligned_cols=171 Identities=8% Similarity=-0.029 Sum_probs=127.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCccch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 038801 478 TIMTGLMENHRPELMAAFLDEVVEDPRVEVKT----HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFE-PN----DQTYL 548 (662)
Q Consensus 478 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 548 (662)
..+..+...|++++|..++++..+.....|+. ..+..+...+...|++++|...|++..+.... ++ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667889999999999999998865555552 23445777777888999999999999974222 23 23799
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhC----CCC---CC
Q 038801 549 SLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEM----KVF---VD 620 (662)
Q Consensus 549 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~---p~ 620 (662)
.+..+|...|++++|+..++++.+..+.. .+..+.. .++..+...|.+.|++++|.+++++..+. +.. +.
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999999999999999655432 1233333 58889999999999999999999987543 222 22
Q ss_pred HHhHHHHHHHHhhh-hhhhHHHHHHHHhhHH
Q 038801 621 KWKYKQAFMENHKK-LKVAKLRKRNFKKMEA 650 (662)
Q Consensus 621 ~~~~~~~~~~~~~~-~~~a~~~~~~~~~l~p 650 (662)
.+..+...+...|+ .+.|...+++++++-.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 44444555566674 5999999998887654
No 118
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.57 E-value=3.4e-07 Score=77.82 Aligned_cols=118 Identities=8% Similarity=-0.095 Sum_probs=56.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCccc-ccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH
Q 038801 342 QNGNVKGLANLIIEAQKLEPSGIVV-DRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA 420 (662)
Q Consensus 342 ~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (662)
..|++++|++.++.... ..| +...+..+...|...|++++|.+.|++.++.. +-+..+|..+..+|.+.|+++
T Consensus 9 ~~~~~e~ai~~~~~a~~-----~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP-----SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CHHHHHHHHHHHHHHSC-----SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HcChHHHHHHHHHHhcc-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34455555555554421 112 22233344555555555555555555555543 334455555555555555555
Q ss_pred HHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHH-HHHHHHc
Q 038801 421 EATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSL-FRDMREA 467 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~ 467 (662)
+|...|++..+. .| +...|..+...|.+.|++++|.+. +++..+.
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 555555555544 22 344455555555555555444333 3444443
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.56 E-value=2.4e-07 Score=78.68 Aligned_cols=140 Identities=9% Similarity=-0.077 Sum_probs=72.2
Q ss_pred HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHh
Q 038801 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVN 380 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~ 380 (662)
+...|++++|+..+...++..+. +...+..+...|.+.|++++|++.|++..++.|. +...+..+..++..
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~-----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQ-----KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER----DPKAHRFLGLLYEL 77 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHH-----HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHH
Confidence 33445555555555444443111 2234445555566666666666666665543322 33345555556666
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH-HHHHHhCCCCC-ChhhHHHHHHHHHcCC
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQL-VMDISSSGLQL-DVGNYDALIEASITSQ 452 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~~-~~~~~~~li~~~~~~g 452 (662)
.|++++|...|++.++.. +-+...+..+..+|.+.|++++|.+. +++..+. .| +...|......+...|
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 666666666666665543 33455666666666666666554433 3555543 33 3444554444444444
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.55 E-value=2.5e-07 Score=85.81 Aligned_cols=129 Identities=10% Similarity=-0.071 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc--HHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE--HNLVD 590 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~~ 590 (662)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-------~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-------KWP-DKFLAGAAGV 175 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-------GCS-CHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-------ccC-CcccHHHHHH
Confidence 34555666777777777777776653 3544444455556666777777777776443 111 111 23556
Q ss_pred HHHHHHHccCchHHHHHHHHHHHhCCCCC----CHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 591 AFLYALVKGGFFDAVMQVVEKSQEMKVFV----DKWKYKQAFMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
.+..++.+.|++++|+..|++.......| +.+.+....+...|+.++|...++++++.+|.
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66777777777777777777776433213 24444444556667777777777777777665
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=2.1e-06 Score=77.16 Aligned_cols=164 Identities=9% Similarity=-0.035 Sum_probs=97.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038801 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMA 493 (662)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 493 (662)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------------ 57 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ------------------------ 57 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH------------------------
Confidence 3456666666644444321 112344555566666666666666666665544210
Q ss_pred HHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 038801 494 AFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEP--NDQTYLSLINGYVTAEQYFSVLMM 566 (662)
Q Consensus 494 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~ 566 (662)
..+..+ ...++..+...|...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...
T Consensus 58 --------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 129 (203)
T 3gw4_A 58 --------KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE 129 (203)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --------HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 111111 2346777777888888888888888776652 1111 124577777888888888888888
Q ss_pred HHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 567 WHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 567 ~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+++..+..+. .+... -..++..+..++...|++++|.+.+++..
T Consensus 130 ~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 130 YEKSLVYAQQ---ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 8888754332 12111 12456777788888888888888887763
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.50 E-value=8.1e-06 Score=78.25 Aligned_cols=168 Identities=10% Similarity=-0.012 Sum_probs=107.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC---CC--cccH
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSSGLQLD-----VGNYDALIEASITSQDFQSAFSLFRDMREARIY---DL--KGSY 476 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~--~~~~ 476 (662)
...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..+++..+.... +. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3345556666667666666666555421111 112333445566667777777777776643211 11 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh---hCCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHH
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVV---EDPRVEV--KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPN-DQT 546 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~ 546 (662)
+.+...|...|++++|...+++.. +..+..+ ...+|..+...|...|++++|...+++..+. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 666777777777777777777765 2212212 2257888899999999999999999988753 11111 468
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHHHhh
Q 038801 547 YLSLINGYVTAEQYFSV-LMMWHEIKRKI 574 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a-~~~~~~m~~~~ 574 (662)
|..+..+|...|++++| ...+++.....
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 88899999999999999 77788877433
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.49 E-value=5.2e-06 Score=75.23 Aligned_cols=137 Identities=11% Similarity=0.037 Sum_probs=104.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYV 555 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 555 (662)
+..+...+...|++++|...+++.. .|+...|..+..+|...|++++|.+.|++..+.. ..+...|..+..++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3445556667777777777777653 3456788889999999999999999999988753 235578889999999
Q ss_pred hcCCHHHHHHHHHHHHHhhcccC-----CCC--CcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 556 TAEQYFSVLMMWHEIKRKISTDG-----QKG--IKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 556 ~~~~~~~a~~~~~~m~~~~~~~~-----~~~--~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..|++++|++.|+++.+..+... ..+ ..|+. ..+..+..++.+.|++++|.+.++++.+..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999999985433110 000 33433 77888999999999999999999999887665
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.47 E-value=5.8e-06 Score=74.87 Aligned_cols=143 Identities=8% Similarity=-0.061 Sum_probs=74.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
.+...+...|++++|...|++.. .++...+..+..+|.+.|++++|...|++..+.. ..+...|..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34444455555555555554442 3344555555555555555555555555554432 113344455555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-chhhHHHHHHHHHhcCCHHHHHHH
Q 038801 453 DFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEV-KTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
++++|...|++..+.........+ ...| ....| ....+..+..+|...|++++|.+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~-------~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDY-------KILG---------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEEC-------GGGT---------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHHH-------HHhc---------------cccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 555555555555443211000000 0000 00222 235678888889999999999999
Q ss_pred HHHHHhCCCCCCH
Q 038801 532 LRRMIFLQFEPND 544 (662)
Q Consensus 532 ~~~m~~~~~~p~~ 544 (662)
|++..+. .|+.
T Consensus 144 ~~~al~~--~p~~ 154 (213)
T 1hh8_A 144 LALATSM--KSEP 154 (213)
T ss_dssp HHHHHTT--CCSG
T ss_pred HHHHHHc--Cccc
Confidence 9998874 5553
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.45 E-value=8.3e-07 Score=75.03 Aligned_cols=99 Identities=15% Similarity=0.030 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-H
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-H 586 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~ 586 (662)
...+..+...+.+.|++++|...|++..+. .| +...|..+..+|...|++++|+..|+++. .+.|+ .
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al---------~l~P~~~ 104 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF---------ALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHSSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH---------hhCCCCc
Confidence 456777777888888888888888888875 45 45678888888888888888888888888 34444 4
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..|..+..++.+.|++++|...|++..+..+.
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 67778888888888888888888888776544
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.44 E-value=4.3e-06 Score=72.13 Aligned_cols=64 Identities=9% Similarity=0.149 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLS--LINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
..|..+..++...|++++|.+.|++..+. .| +...+.. +...+...|++++|++.+++.....+
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 45556666666666666666666666653 23 2333322 23335556677777777666654443
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.43 E-value=3.1e-06 Score=69.21 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=77.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-H
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-H 586 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~ 586 (662)
...+......|.+.|++++|++.|++.++. .| +...|..+..+|.+.|++++|+..+++.. .+.|+ .
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---------~~~p~~~ 81 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCI---------RLDSKFI 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH---------Hhhhhhh
Confidence 345677788888888888888888888875 44 55788888888888888888888888888 23343 4
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..|..+..++...|++++|++.+++..+..+.
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 67788888888888888888888888776554
No 128
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=6.8e-06 Score=73.70 Aligned_cols=86 Identities=14% Similarity=0.032 Sum_probs=54.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCH
Q 038801 380 NLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS----GLQL-DVGNYDALIEASITSQDF 454 (662)
Q Consensus 380 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~ 454 (662)
..|++++|.++++.+.. .......++..+...+...|++++|...+++..+. +..+ ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45777777775444433 11234567777777888888888888888776552 1122 245566677777778888
Q ss_pred HHHHHHHHHHHH
Q 038801 455 QSAFSLFRDMRE 466 (662)
Q Consensus 455 ~~A~~~~~~m~~ 466 (662)
++|...+++..+
T Consensus 83 ~~A~~~~~~al~ 94 (203)
T 3gw4_A 83 DAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776654
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.34 E-value=3.7e-06 Score=70.99 Aligned_cols=96 Identities=6% Similarity=-0.032 Sum_probs=66.2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 038801 472 LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN-DQTYLSL 550 (662)
Q Consensus 472 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 550 (662)
+...+..+...+.+.|++++|+..|++.....+ -+...|..+..+|...|++++|...|++..+. .|+ ...|..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~l 110 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHH
Confidence 344566666777777777777777777766422 23456777777777777777777777777764 443 3567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 038801 551 INGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 551 i~~~~~~~~~~~a~~~~~~m~ 571 (662)
..+|...|++++|+..|++..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777777777
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.34 E-value=3.4e-06 Score=78.26 Aligned_cols=187 Identities=8% Similarity=-0.093 Sum_probs=116.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC-ChhhHHHH-------HHHHHcCCCHHHHHHHHHHHHHcCCCCC--------------
Q 038801 415 KEHRTAEATQLVMDISSSGLQL-DVGNYDAL-------IEASITSQDFQSAFSLFRDMREARIYDL-------------- 472 (662)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-------------- 472 (662)
..++.+.|.+.|.++... .| ....|..+ ...+.+.++..+++..+..-.+. .|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccc
Confidence 356666666666666655 33 33455544 34444444444444444443331 111
Q ss_pred --------cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 038801 473 --------KGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND 544 (662)
Q Consensus 473 --------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 544 (662)
......+...+...|++++|.++|+.+... .|+....-.+...+.+.|++++|+..|+.... .|+.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~ 167 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDK 167 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCc
Confidence 012334556677788888888888777653 23322445555577888888888888876654 2322
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc--HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 545 ----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE--HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 545 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
..+..+..++...|++++|+..|++.. .....|. .........++.+.|+.++|...|+++...++.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-------~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEAN-------DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-------cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 366777888888888888888888887 3333253 235566667788888888888888888776654
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.32 E-value=1.5e-05 Score=68.62 Aligned_cols=131 Identities=15% Similarity=0.030 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNL 588 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~ 588 (662)
..|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|+..+++..+ ..| +...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~ 83 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---------LDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCcccHHH
Confidence 346666677777777888877777777642 22456777777777777888888877777772 223 3456
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHH--HHHHHHhhhhhhhHHHHHHHHhhHH
Q 038801 589 VDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYK--QAFMENHKKLKVAKLRKRNFKKMEA 650 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~--~~~~~~~~~~~~a~~~~~~~~~l~p 650 (662)
+..+..++.+.|++++|.+.++++.+..+. +..+..+ ...+...|+.+.|....++..++-+
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 677777777778888888888777665543 2233222 1123445777777777766655543
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.32 E-value=0.00026 Score=67.97 Aligned_cols=152 Identities=9% Similarity=0.002 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-
Q 038801 383 LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTA--------EATQLVMDISSSGLQLDVGNYDALIEASITSQD- 453 (662)
Q Consensus 383 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~- 453 (662)
+++++.++++.+.+.. +-|-..|+.-..++.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 3444444444444432 233334433333333333333 566666666655322 55566666555555554
Q ss_pred ------HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCH--------------------HHHHHHHHHHhhCC----
Q 038801 454 ------FQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRP--------------------ELMAAFLDEVVEDP---- 503 (662)
Q Consensus 454 ------~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~---- 503 (662)
++++++.+++++... +.+...|+.+-..+.+.|+. ........++....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 456666666666554 44445555544444444432 11122222222110
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 504 RVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 504 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
.-.++......|+..|...|+.++|.++++.+.+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0123456667777777777777777777777764
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=5.9e-06 Score=78.57 Aligned_cols=190 Identities=7% Similarity=-0.065 Sum_probs=109.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
.+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|...+++..+... -+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34445556666677777777776666643 33566777777777777777777777777766521 24566777777777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHH
Q 038801 450 TSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAK 529 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (662)
..|++++|...|++..+.+ +.+...+...+....+.. .+..... .... ....+......+.. + ..|+.++|.
T Consensus 84 ~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~-~~~~~~~i~~~l~~-l-~~~~~~~A~ 155 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIA---KKKRWNS-IEER-RIHQESELHSYLTR-L-IAAEREREL 155 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHH---HHHHHHH-HHHT-CCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHH---HHHHHHH-HHHH-HHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence 7888888888777776543 111112222222222111 1111111 1111 22233333333322 2 368899999
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 038801 530 RTLRRMIFLQFEPNDQ-TYLSLINGYVTA-EQYFSVLMMWHEIK 571 (662)
Q Consensus 530 ~~~~~m~~~~~~p~~~-~~~~li~~~~~~-~~~~~a~~~~~~m~ 571 (662)
+.+++..+. .|+.. ....+...+.+. +.+++|.++|+++.
T Consensus 156 ~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 156 EECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp TTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999888864 66654 333443334443 66888998888776
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=3.8e-06 Score=79.93 Aligned_cols=193 Identities=9% Similarity=-0.045 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 038801 402 GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM 480 (662)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 480 (662)
+...+..+...+.+.|++++|...|++..+. .| +...|..+..+|.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567778888999999999999999999886 44 67888889999999999999999999998775 56667888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038801 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQY 560 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 560 (662)
.++...|++++|...|.+..+..+-.+ ..+...+....+. .++... ..........+......+.. + ..|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~-l-~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTR-L-IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHH-H-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHH-H-HHHHH
Confidence 999999999999999988766311111 1111222222211 111111 11222223344444333322 2 25888
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHcc-CchHHHHHHHHHHHh
Q 038801 561 FSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKG-GFFDAVMQVVEKSQE 614 (662)
Q Consensus 561 ~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 614 (662)
++|++.+++.. ...|+. .....+...+.+. +.+++|.++|+++.+
T Consensus 152 ~~A~~~~~~al---------~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNH---------EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGG---------TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhh---------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 89988888777 345554 3334444444444 678889999988754
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.30 E-value=4.6e-06 Score=70.45 Aligned_cols=96 Identities=7% Similarity=-0.083 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
..+..+...+.+.|++++|...|++..... ..+...|..+..+|...|++++|+..|++..+.. |.+...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344445555555566666666655555442 1144455555555555566666666665555543 33334444455555
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 038801 484 MENHRPELMAAFLDEVVE 501 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~ 501 (662)
...|+.++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=4.6e-06 Score=68.32 Aligned_cols=110 Identities=13% Similarity=0.001 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-H
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-H 586 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~ 586 (662)
...+..+...+.+.|++++|++.|++.++. .| +...|..+..+|...|++++|++.+++..+..+.. ....+. .
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET--RADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc--chhhHHHH
Confidence 346778899999999999999999999985 55 45789999999999999999999999998433311 011111 2
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHH
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKW 622 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 622 (662)
.+|..+..++...|++++|++.+++..+..+.|+..
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 477888889999999999999999988766665543
No 137
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.28 E-value=2e-05 Score=63.75 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
++..+...+.+.|++++|..+|+++.+.. ..+...+..+...+...|++++|...|+++.+
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33344444444444444444444443321 11233344444444444444444444444443
No 138
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.26 E-value=1.7e-05 Score=64.78 Aligned_cols=90 Identities=10% Similarity=-0.014 Sum_probs=37.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 038801 376 SACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ 455 (662)
Q Consensus 376 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 455 (662)
..+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|+..|++..+... .+...|..+..+|...|+++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHCCCHH
Confidence 33334444444444444443332 22334444444444444444444444444443311 12334444444444444444
Q ss_pred HHHHHHHHHHHc
Q 038801 456 SAFSLFRDMREA 467 (662)
Q Consensus 456 ~A~~~~~~m~~~ 467 (662)
+|.+.|++..+.
T Consensus 99 ~A~~~~~~al~l 110 (126)
T 4gco_A 99 KAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.25 E-value=6.1e-06 Score=69.71 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=80.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-c
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-E 585 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~ 585 (662)
+...+..+...+.+.|++++|...|++.... .| +...|..+..+|...|++++|+..|+++. .+.| +
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------~l~p~~ 88 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA---------VMDIXE 88 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHSTTC
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------hcCCCC
Confidence 3456777888888999999999999988875 44 56788888888999999999999999988 2334 3
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
...+..+..++...|++++|.+.+++..+..+.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467788888899999999999999988766543
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.24 E-value=1.3e-05 Score=70.17 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=66.4
Q ss_pred hcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHH-HHhc
Q 038801 303 KLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISA-CVNL 381 (662)
Q Consensus 303 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~-~~~~ 381 (662)
..|++++|...+.+.+...+. +...|..+...|...|++++|.+.|++...+.+. +...+..+..+ +...
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE----NAELYAALATVLYYQA 92 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhc
Confidence 345566666665555554321 4556666666666666666666666666543222 22334444445 4456
Q ss_pred CCh--HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 038801 382 GLS--DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSS 432 (662)
Q Consensus 382 ~~~--~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 432 (662)
|++ ++|...++++.+.. +.+...+..+..+|...|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 665 66666666666543 334555666666666666666666666666654
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=2.9e-05 Score=62.79 Aligned_cols=95 Identities=13% Similarity=0.228 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC 520 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 520 (662)
|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++++.+.. ..+..++..+...|.
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2223334444444444444444444444443321 112345556666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 038801 521 KAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~ 538 (662)
..|++++|...|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 666666666666666653
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=0.00047 Score=66.27 Aligned_cols=224 Identities=8% Similarity=-0.028 Sum_probs=160.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc-C
Q 038801 340 FLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLG-LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE-H 417 (662)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g 417 (662)
..+.+..++|+++++++..+.+. +..+++.--..+...| .++++.++++.++... +-+..+|+.-..++.+. +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 33445567899999998765443 2334555555556667 5999999999999875 56778888888888877 7
Q ss_pred -CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH--------HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 418 -RTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQ--------SAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 418 -~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
++++++++++++.+...+ |...|+.-.-.+.+.|.++ ++++.++++++.. +-+...|+.....+.+.++
T Consensus 139 ~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 899999999999987432 7778877766666666666 9999999999986 5556678887777777775
Q ss_pred -------HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC--
Q 038801 489 -------PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRL--------------------EDAKRTLRRMIFLQ-- 539 (662)
Q Consensus 489 -------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-- 539 (662)
++++.+.+++.....+ -|...|+-+-..+.+.|+. ....+...++...+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P--~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIP--HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred cccchHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 6888888888876422 2556777777677766653 23333333443321
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 540 ---FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 540 ---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
-.+.......|.+.|...|+.++|.++++.+.+
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 025667899999999999999999999999873
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=2.2e-05 Score=64.47 Aligned_cols=90 Identities=13% Similarity=0.094 Sum_probs=35.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++..+.. ..+...+..+..++.+.|++
T Consensus 23 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 23 GNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDY 100 (133)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhH
Confidence 333333444444444444433322 2233334444444444444444444444443331 11233344444444444444
Q ss_pred HHHHHHHHHHHH
Q 038801 455 QSAFSLFRDMRE 466 (662)
Q Consensus 455 ~~A~~~~~~m~~ 466 (662)
++|...|++..+
T Consensus 101 ~~A~~~~~~~~~ 112 (133)
T 2lni_A 101 TKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=1.7e-05 Score=68.26 Aligned_cols=100 Identities=11% Similarity=-0.031 Sum_probs=74.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
+...|..+...+.+.|++++|.+.|++.++. .| +...|..+..+|...|++++|+..+++..+ +.|+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------~~p~~ 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATV---------VDPKY 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------hCCCC
Confidence 3456777777888888888888888888774 34 556777888888888888888888888872 2343
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 586 HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
...|..+..++.+.|++++|.+.+++..+..+.
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 567777788888888888888888887766554
No 145
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.22 E-value=1.4e-05 Score=65.43 Aligned_cols=112 Identities=10% Similarity=-0.021 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNL 588 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~ 588 (662)
..|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|+..++++....+.. .+..+. ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--chhHHHHHHH
Confidence 467888889999999999999999998753 3356788899999999999999999999998433211 000111 567
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhH
Q 038801 589 VDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKY 624 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 624 (662)
+..+..++.+.|++++|.+.++++.+..+.++.+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 117 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888899999999999999999999887665444433
No 146
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=6.5e-05 Score=76.50 Aligned_cols=170 Identities=8% Similarity=-0.079 Sum_probs=105.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCccchhh
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARI-YDLK----GSYLTIMTGLMENHRPELMAAFLDEVVE----DPRVEVKTHD 511 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 511 (662)
+..+...|...|++++|.+++.++.+.-- .++. .+.+.+-..+...|+.+.+..++.+... ......-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 34455555555555555555555443210 0110 0111112222334556666666555432 1111222457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
+..+...|...|++++|..++++.... +-.+. ...|..++..|...|++++|..++++....... .+..+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~ 214 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS---IYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---SCCCHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc---CCCchHH
Confidence 788999999999999999999887752 11222 258889999999999999999999998854332 122222
Q ss_pred -HHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 586 -HNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 586 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
..++..++..+...|++++|...+.+..
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2567777788889999999998887764
No 147
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=0.00032 Score=71.25 Aligned_cols=170 Identities=7% Similarity=-0.016 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCh----hhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CC-CCCccc
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGL-QLDV----GNYDALIEASITSQDFQSAFSLFRDMREA----RI-YDLKGS 475 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~ 475 (662)
+..+...|.+.|++++|.+++..+...-- .++. ...+.+-..+...|+.++|..++++.... +. ..-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566666667777777666665543210 1111 12222333334456777777777665532 11 112235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CC-C--HH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVED---PRVEV-KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL--QF-EP-N--DQ 545 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~ 545 (662)
+..+...+...|++++|..+++++... .+-++ ...+|..++..|...|++++|..++++.... .+ .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566667777777777777777665432 11111 2456778888888888888888888776642 11 12 1 13
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
.+..+...+...|++++|...|.+..+...
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 566666777778888888888887775544
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.21 E-value=1.7e-05 Score=64.81 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHN 587 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~ 587 (662)
...+..+...+...|++++|...|++..... ..+...+..+...+...|++++|+..+++... ..| +..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~ 81 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC---------IDPAYSK 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh---------cCccCHH
Confidence 4456667777777788888888887777642 22456777777777777888888888877772 223 345
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.+..+..++.+.|++++|.+.+++..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 667777777788888888888877766554
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.19 E-value=3.4e-05 Score=63.32 Aligned_cols=99 Identities=8% Similarity=-0.036 Sum_probs=62.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 038801 401 VGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIM 480 (662)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 480 (662)
.+...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 3455666677777777777777777777776521 255667777777777777777777777776653 33334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHhh
Q 038801 481 TGLMENHRPELMAAFLDEVVE 501 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~ 501 (662)
..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555444
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.18 E-value=1.5e-05 Score=69.78 Aligned_cols=117 Identities=5% Similarity=-0.024 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCCH--HHHH
Q 038801 382 GLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEA-SITSQDF--QSAF 458 (662)
Q Consensus 382 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~~A~ 458 (662)
|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+... .+...+..+..+ +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 44444444444444432 23344455555555555555555555555444321 133344444444 4444554 5555
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038801 459 SLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE 501 (662)
Q Consensus 459 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 501 (662)
..|++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555554442 22233344444444444444444444444443
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.18 E-value=2.7e-05 Score=63.62 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=10.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
+..+...+...|++++|...|++..
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333444444444444444333
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.17 E-value=3.2e-05 Score=75.58 Aligned_cols=128 Identities=8% Similarity=-0.034 Sum_probs=101.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN----------------DQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
...|..+...|.+.|++++|...|++.++. .|+ ...|..+..+|.+.|++++|+..++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456778888888899999999999888875 343 47899999999999999999999999993
Q ss_pred hhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhh-HHHHHHHHh
Q 038801 573 KISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVA-KLRKRNFKK 647 (662)
Q Consensus 573 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a-~~~~~~~~~ 647 (662)
+.| +...+..+..++...|++++|+..|+++.+..+. +..+..+...+...|+.+.+ +..+++++.
T Consensus 225 ---------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 ---------LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp ---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 4578889999999999999999999999887765 34555555555667888777 445666654
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.16 E-value=2.2e-05 Score=64.10 Aligned_cols=96 Identities=6% Similarity=0.023 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HN 587 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~ 587 (662)
..|..+...+.+.|++++|...|++.++. .| +...|..+..++...|++++|+..+++..+ +.|+ ..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------~~p~~~~ 73 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE---------KDPNFVR 73 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------hCCCcHH
Confidence 34566666777777777777777777764 33 456777777777777777777777777772 2333 45
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
.+..+..++...|++++|.+.+++..+..
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 66677777777777777777777776544
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.16 E-value=2.7e-05 Score=76.14 Aligned_cols=132 Identities=14% Similarity=0.068 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 403 LGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD--------------VGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
...+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566666667777777777777776665421111 2445555555555555555555555554432
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 038801 469 IYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTY 547 (662)
Q Consensus 469 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~ 547 (662)
+. +...|..+..+|...|++++|...|++.++. .| +...+
T Consensus 227 -p~------------------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~ 267 (336)
T 1p5q_A 227 -SN------------------------------------NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAK 267 (336)
T ss_dssp -TT------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHH
T ss_pred -CC------------------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 22 2344555555666666666666666666553 33 33455
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 038801 548 LSLINGYVTAEQYFSV-LMMWHEIKRK 573 (662)
Q Consensus 548 ~~li~~~~~~~~~~~a-~~~~~~m~~~ 573 (662)
..+..++...|++++| ..+++.|...
T Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666555 3344444433
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.14 E-value=4.5e-05 Score=60.95 Aligned_cols=100 Identities=14% Similarity=0.042 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHN 587 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~ 587 (662)
...+..+...+...|++++|...|++..... ..+...+..+...+...|++++|...+++..+ ..| +..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~ 73 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---------LKPDWGK 73 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------HCTTCHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------hCcccHH
Confidence 3456677777788888888888888877642 22556777777888888888888888888772 223 346
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.+..+..++.+.|++++|.+.+++..+.++.
T Consensus 74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 6777777888888888888888887766554
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.14 E-value=2.5e-05 Score=61.83 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc---c
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF---E 585 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p---~ 585 (662)
...|..+...+...|++++|...|++..+.. ..+...|..+...+...|++++|++.+++..+ ..| +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~ 75 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN---------VIEDEYN 75 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------TSCCTTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------hCcccch
Confidence 4456777788888888999998888888753 23556788888888888999999999988883 223 3
Q ss_pred HHHHHHHHHHHHcc-CchHHHHHHHHHHHhCCCC
Q 038801 586 HNLVDAFLYALVKG-GFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 ~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 618 (662)
...+..+..++.+. |++++|.+.++++.+..+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 56778888888888 9999999999888776654
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.13 E-value=2.3e-05 Score=65.59 Aligned_cols=98 Identities=12% Similarity=0.118 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EH 586 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~ 586 (662)
...+..+...+.+.|++++|...|++.... .| +...|..+..++...|++++|+..|++... +.| +.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------~~p~~~ 86 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL---------MDINEP 86 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCT
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---------cCCCCc
Confidence 445666777888889999999999988875 44 557788888888889999999999998882 334 34
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
..+..+..++...|++++|.+.+++..+..+
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6777788888899999999999988876554
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.09 E-value=3.5e-05 Score=66.29 Aligned_cols=96 Identities=13% Similarity=-0.035 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
.+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|+..|++..+... -+...|..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34444455555555555555555555442 23444555555555555555555555555544421 13444555555555
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 038801 450 TSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~ 467 (662)
..|++++|...|++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.07 E-value=4.7e-05 Score=62.17 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGL 483 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 483 (662)
.+..+...+.+.|++++|+..|++..+. .| +...|+.+..+|.+.|++++|++.+++.++... .+...+..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~----- 81 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR-ETRADYKL----- 81 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHH-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc-ccchhhHH-----
Confidence 4455555666666666666666665554 22 345555555556666666666665555544320 00000000
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038801 484 MENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYL 548 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 548 (662)
-..+|..+..++...|++++|++.|++.++. .||.....
T Consensus 82 ------------------------~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 82 ------------------------IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 0135666777777888888888888887763 56654443
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.0021 Score=61.42 Aligned_cols=192 Identities=10% Similarity=-0.003 Sum_probs=130.1
Q ss_pred HHhcCCch-hHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCc----------HHHHHHHHHHHHHhhhhhhcCCCCccH
Q 038801 152 MRNANTAA-PAFALVKCMFKNRYFMPFELWGGFLVDICRKNSN----------FVAFLKVFEECCRIALDENLDFMKPNI 220 (662)
Q Consensus 152 ~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 220 (662)
..+.|.++ +|+.+++.++... |...+..+.-..+....+. +++++.+++.+... -+.+.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PKny 108 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSY 108 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCCCH
Confidence 34566665 7899999998753 5554433322222222222 67889999998773 34567
Q ss_pred HHHHHHHHHHhccCC--ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCcHHhHHHH
Q 038801 221 YACNAALEGCCYGLQ--SVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL-QEKIVELESLMNEFGFSSQMVFYSSL 297 (662)
Q Consensus 221 ~~~~~ll~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (662)
.+|+.---.+..- + .+++++.+++.+.+.. +-|-..|+.-.-++...|. ++++.+.++.+.+.. +-|...|+..
T Consensus 109 ~aW~hR~wlL~~l-~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R 185 (331)
T 3dss_A 109 GTWHHRCWLLSRL-PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred HHHHHHHHHHhcc-CcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 7787666655554 6 4899999999998865 4466677776667777888 589999999999876 4667777776
Q ss_pred HHHHHhc--------------CChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 038801 298 ISGYVKL--------------GNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQN-----------GNVKGLANL 352 (662)
Q Consensus 298 i~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------~~~~~a~~~ 352 (662)
...+.+. +.++++++.+.+.+...+. |...|+-+-..+.+. +..+++++.
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-----d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-----DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 6665554 4577888888888876544 778887665555544 345566666
Q ss_pred HHHHHHhCC
Q 038801 353 IIEAQKLEP 361 (662)
Q Consensus 353 ~~~m~~~~~ 361 (662)
++++.++.|
T Consensus 261 ~~elle~~p 269 (331)
T 3dss_A 261 CKELQELEP 269 (331)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhhCc
Confidence 666655443
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=3.5e-05 Score=65.82 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF-EPN----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF 584 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p 584 (662)
.++..+...|...|++++|.+.+++..+..- ..+ ...+..+...+...|++++|.+.+++..+..+. .+..+
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~ 126 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LKDRI 126 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---ccchH
Confidence 4677788888888999999998888775210 111 346778888888999999999999988855442 22222
Q ss_pred c-HHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 585 E-HNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 585 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
. ..++..+...+...|++++|.+.+++..+
T Consensus 127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 36677888888999999999999988754
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=5.2e-06 Score=74.25 Aligned_cols=93 Identities=5% Similarity=-0.093 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNL 588 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~ 588 (662)
..|..+..+|...|++++|...+++..+.. ..+...|..+..+|...|++++|+..|++..+ +.| +...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~ 158 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS---------LNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------HSTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---------HCCCcHHH
Confidence 355666666666777777777776666542 22345666666666666777777777766662 223 2344
Q ss_pred HHHHHHHHHccCchHHHH-HHHHHH
Q 038801 589 VDAFLYALVKGGFFDAVM-QVVEKS 612 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~-~~~~~m 612 (662)
+..+..++...|+.+++. ..+..|
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 159 RNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554 333433
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.05 E-value=2e-05 Score=65.86 Aligned_cols=109 Identities=12% Similarity=-0.033 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC---CCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhC-----
Q 038801 545 QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK---GIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEM----- 615 (662)
Q Consensus 545 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----- 615 (662)
..+......+.+.|++++|+..|++..+..+..... ...| +...|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 355667777888999999999999999554421100 0011 1238889999999999999999999999886
Q ss_pred --CCC-CCHH----hHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 616 --KVF-VDKW----KYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 616 --~~~-p~~~----~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
++. +..| ......+...|++++|...++++++++|.++
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 543 3466 6667788888999999999999999999853
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.04 E-value=6.8e-05 Score=62.63 Aligned_cols=89 Identities=13% Similarity=-0.064 Sum_probs=36.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 038801 375 ISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDF 454 (662)
Q Consensus 375 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 454 (662)
...+...|++++|...|++..... +.+...|..+..+|.+.|++++|...|++...... .+...+..+..+|...|++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCH
Confidence 333444444444444444444332 22333444444444444444444444444443311 1233333344444444444
Q ss_pred HHHHHHHHHHH
Q 038801 455 QSAFSLFRDMR 465 (662)
Q Consensus 455 ~~A~~~~~~m~ 465 (662)
++|...|++..
T Consensus 103 ~~A~~~~~~al 113 (142)
T 2xcb_A 103 DGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.04 E-value=7.1e-06 Score=73.36 Aligned_cols=125 Identities=10% Similarity=-0.098 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccc------------cchHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 038801 331 ETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVD------------RSVGFGIISACVNLGLSDKAHSILDEMNACG 398 (662)
Q Consensus 331 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 398 (662)
..+..+...+...|++++|++.|++...+.+...... ...+..+..++...|++++|...+++.++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455666667777777777777777665433211100 1344445555555566666666665555542
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHH
Q 038801 399 CSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL-DVGNYDALIEASITSQDFQSAF 458 (662)
Q Consensus 399 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 458 (662)
+.+...+..+..+|...|++++|...|++..+. .| +...+..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666666666666655544 22 3344444444444444444444
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=2.3e-05 Score=63.42 Aligned_cols=97 Identities=3% Similarity=-0.085 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhH
Q 038801 547 YLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKY 624 (662)
Q Consensus 547 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~ 624 (662)
+..+...+.+.|++++|+..++++. ...| +...+..+..++.+.|++++|+..+++..+.++. ++.+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al---------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVC---------QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH---------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4556677888999999999999999 3445 4578888999999999999999999999887765 556666
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 625 KQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 625 ~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
+...+...|+.+.|...++++++++|..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 6667777899999999999999999864
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.04 E-value=0.001 Score=63.53 Aligned_cols=198 Identities=9% Similarity=0.007 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-HHHHHHH
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHR--TAEATQLVMDISSSGLQLDVGNYDALIEASITSQD-FQSAFSL 460 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~ 460 (662)
++++..+++.+.... +-+..+|+.-..++.+.|+ +++++++++.+.+.... |...|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 445555555555543 3455555555555555552 55666666666554322 45555555555555555 3555555
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 461 FRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 461 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
++++++.. +-+...|+.....+...+... +. ++ ..-...+.++++++.+.+.+..
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~-------------~~-~~--------~~~~~~~~~~eEle~~~~ai~~-- 222 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQP-------------DS-GP--------QGRLPENVLLKELELVQNAFFT-- 222 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC----------------------------CCCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhcc-------------cc-cc--------ccccchHHHHHHHHHHHHHHHh--
Confidence 55555544 222233333332222221100 00 00 0000014467888888888874
Q ss_pred CC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHH---HHHHHccCchHH
Q 038801 541 EP-NDQTYLSLINGYVTA-----------EQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAF---LYALVKGGFFDA 604 (662)
Q Consensus 541 ~p-~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l---~~~~~~~g~~~~ 604 (662)
.| |...|+-+-..+.+. +.++++++.++++. .+.||. .++..+ ..+....|..++
T Consensus 223 ~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell---------e~~pd~~w~l~~~~~~~~~~~~~~~~~~ 293 (331)
T 3dss_A 223 DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ---------ELEPENKWCLLTIILLMRALDPLLYEKE 293 (331)
T ss_dssp STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHHCTTTTHHH
T ss_pred CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH---------hhCcccchHHHHHHHHHHhhcccccHHH
Confidence 45 445666554444443 45778888888888 345554 222222 122234667777
Q ss_pred HHHHHHHHHhCCC
Q 038801 605 VMQVVEKSQEMKV 617 (662)
Q Consensus 605 A~~~~~~m~~~~~ 617 (662)
+..+++++.+.++
T Consensus 294 ~~~~l~~l~~~Dp 306 (331)
T 3dss_A 294 TLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhCc
Confidence 8888888766544
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.04 E-value=4.7e-05 Score=63.04 Aligned_cols=99 Identities=8% Similarity=-0.003 Sum_probs=70.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cH
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EH 586 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~ 586 (662)
+...|..+...+...|++++|...|++..+.. ..+...|..+..++...|++++|+..+++..+ +.| +.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---------~~p~~~ 77 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---------LDGQSV 77 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------hCchhH
Confidence 45567777777778888888888888777642 22456777777777778888888888887772 223 34
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 587 NLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
..+..+..++...|++++|...++++.+..
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 667777777788888888888887775543
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.98 E-value=0.00015 Score=59.84 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038801 474 GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553 (662)
Q Consensus 474 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 553 (662)
..+..+...+...|++++|...|++.....+ .+...|..+..+|...|++++|...+++..+.. .-+...|..+..+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3444445555555555555555555444311 134567778888888888888888888888753 2245678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhh
Q 038801 554 YVTAEQYFSVLMMWHEIKRKI 574 (662)
Q Consensus 554 ~~~~~~~~~a~~~~~~m~~~~ 574 (662)
+...|++++|+..|+++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 888888888888888887433
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.97 E-value=4.1e-05 Score=61.86 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNL 588 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~ 588 (662)
.+..+...+.+.|++++|...|++.++. .| +...|..+..++...|++++|+..|++.. .+.|+ ...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---------~l~P~~~~~ 87 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHAR---------MLDPKDIAV 87 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHH
Confidence 4556667778888888888888888874 45 45677788888888888888888888887 33443 467
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 589 VDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
+..+..++.+.|++++|...+++..+..+
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77778888888888888888888766544
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.95 E-value=0.00011 Score=57.84 Aligned_cols=97 Identities=9% Similarity=-0.118 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHH
Q 038801 370 VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL--DVGNYDALIEA 447 (662)
Q Consensus 370 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~ 447 (662)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+.. .. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555556666666666666655543 3345556666666666666666666666666542 11 34556666666
Q ss_pred HHcC-CCHHHHHHHHHHHHHcC
Q 038801 448 SITS-QDFQSAFSLFRDMREAR 468 (662)
Q Consensus 448 ~~~~-g~~~~A~~~~~~m~~~~ 468 (662)
+... |++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 6666 66666666666665543
No 172
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.0002 Score=58.20 Aligned_cols=95 Identities=13% Similarity=-0.032 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLK 411 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 411 (662)
.|..+...+.+.|++++|++.|++..++.+. +...+..+..++...|++++|...+++.++.. +.+...|..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4444445555555555555555555442221 22334444445555555555555555554432 233444555555
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 038801 412 AYCKEHRTAEATQLVMDISS 431 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~ 431 (662)
++...|++++|...|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 55555555555555555444
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.95 E-value=9.3e-05 Score=60.41 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc--
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-- 585 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-- 585 (662)
+..+...+...|++++|...|++..+. .|+. ..+..+..++...|++++|+..++++... .|+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---------~p~~~ 73 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---------YPTHD 73 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------CCCCc
Confidence 345566777888999999999888874 3332 46777888888889999999999988832 232
Q ss_pred --HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 586 --HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 586 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
...+..+..++.+.|++++|...++++.+..+.
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 456677788888999999999999888776543
No 174
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.94 E-value=0.00024 Score=56.56 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHH
Q 038801 441 YDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFC 520 (662)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 520 (662)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+..+ .+...+..+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHH
Confidence 3334444444444444444444444432 22333344444444444444444444444443211 12345566666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 038801 521 KAGRLEDAKRTLRRMIFL 538 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~ 538 (662)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666676666666653
No 175
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.94 E-value=8e-05 Score=76.02 Aligned_cols=105 Identities=10% Similarity=-0.096 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCC
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFL-----Q-FEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKG 581 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 581 (662)
..+++.|...|...|++++|+.++++.++. | -.|+. .+++.|...|...|++++|+.++++..+.....-..+
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999887751 2 23444 5899999999999999999999999987666432222
Q ss_pred CcccH-HHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 582 IKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 582 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
.|+. .+.+.+..++...|++++|..++.++.+
T Consensus 431 -Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 -HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 5667777788899999999999999865
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=0.00015 Score=60.79 Aligned_cols=100 Identities=11% Similarity=-0.014 Sum_probs=76.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCc
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN----DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIK 583 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 583 (662)
+...+..+...+...|++++|.+.|++..+. .|+ ...|..+..+|...|++++|+..+++..+ ..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------~~ 95 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE---------KD 95 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh---------hC
Confidence 4556777788888888888888888888864 566 46777788888888888888888888872 23
Q ss_pred c-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 584 F-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 584 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
| +...+..+..++...|++++|...+++..+..+.
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3 3566777778888888888888888888766543
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.90 E-value=7.1e-05 Score=63.82 Aligned_cols=139 Identities=12% Similarity=-0.023 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ-LD----VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLT 478 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 478 (662)
.++..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------- 80 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR--------- 80 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------
Confidence 35556666666666666666666665543111 01 12445555555556666666665555443210
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHH
Q 038801 479 IMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFL----QFEPN-DQTYLSLING 553 (662)
Q Consensus 479 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~ 553 (662)
..........++..+...+...|++++|.+.+++..+. +..+. ...+..+...
T Consensus 81 ----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 81 ----------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp ----------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 00011111345677777888888888888888777642 11111 2467777888
Q ss_pred HHhcCCHHHHHHHHHHHHHh
Q 038801 554 YVTAEQYFSVLMMWHEIKRK 573 (662)
Q Consensus 554 ~~~~~~~~~a~~~~~~m~~~ 573 (662)
+...|++++|.+.+++..+.
T Consensus 139 ~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 88889999999888887743
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=0.0001 Score=60.08 Aligned_cols=114 Identities=8% Similarity=-0.014 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLM 484 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 484 (662)
.+..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|...+++..+... .+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~------------ 71 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-EN------------ 71 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HS------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-cc------------
Confidence 44445555555555555555555555432 11344444555555555555555555555443320 00
Q ss_pred hcCCHHHHHHHHHHHhhCCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038801 485 ENHRPELMAAFLDEVVEDPRVEVK-THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLIN 552 (662)
Q Consensus 485 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 552 (662)
.+..+. ..+|..+..+|...|++++|.+.|++..+. .|+......+..
T Consensus 72 ------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 72 ------------------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred ------------------chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 000000 445677777788888888888888887764 456554444433
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00014 Score=60.99 Aligned_cols=101 Identities=15% Similarity=0.038 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc----HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE----HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+...+..+...+...|++++|+..|++.. ...|+ ...+..+..++.+.|++++|...+++..+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---------~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---------GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---------TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 56788899999999999999999999999 34455 577888889999999999999999998776553
Q ss_pred -CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 619 -VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 619 -p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
+..+..+...+...|+.+.|...++++++++|.+
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4456565666777899999999999999998753
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.81 E-value=2.2e-05 Score=63.09 Aligned_cols=60 Identities=5% Similarity=-0.057 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
.+..+..+|.+.|++++|...|++..+.... +...+..+..++...|++++|+..|++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333444444444444444444444333111 23333333344444444444444444333
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.80 E-value=4.3e-05 Score=78.57 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=47.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 038801 482 GLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQY 560 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~ 560 (662)
.+.+.|++++|.+.+++..+..+ .+...|..+..+|.+.|++++|.+.+++..+. .| +...|..+..+|...|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 34455566666666665554311 12445555555666666666666666665553 23 334555555556666666
Q ss_pred HHHHHHHHHHH
Q 038801 561 FSVLMMWHEIK 571 (662)
Q Consensus 561 ~~a~~~~~~m~ 571 (662)
++|++.++++.
T Consensus 91 ~eA~~~~~~al 101 (477)
T 1wao_1 91 RAALRDYETVV 101 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666555
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.79 E-value=1.8e-05 Score=63.60 Aligned_cols=85 Identities=14% Similarity=0.087 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHc
Q 038801 522 AGRLEDAKRTLRRMIFLQF-EPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVK 598 (662)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 598 (662)
.|++++|+..|++.++.+. .|+ ...+..+..+|...|++++|+..|+++.+ ..|+ ...+..+..++.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK---------QFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCCCchHHHHHHHHHHHH
Confidence 3455555555555554210 122 13444555555555555555555555551 1221 2444445555555
Q ss_pred cCchHHHHHHHHHHHhC
Q 038801 599 GGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~ 615 (662)
.|++++|.+.+++..+.
T Consensus 74 ~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555554443
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.78 E-value=3.5e-05 Score=75.33 Aligned_cols=131 Identities=12% Similarity=-0.005 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND------------------QTYLSLINGYVTAEQYFSVLMMWHEIKRK 573 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 573 (662)
+..+...+.+.|++++|...|++.+.. .|+. ..|..+..+|.+.|++++|+..+++..+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 258 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT- 258 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 444455555566666666666655542 3433 2788899999999999999999999992
Q ss_pred hcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHH-HHhhhhhhhHHHHHHHHhhHH
Q 038801 574 ISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFM-ENHKKLKVAKLRKRNFKKMEA 650 (662)
Q Consensus 574 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~-~~~~~~~~a~~~~~~~~~l~p 650 (662)
+.| +...|..+..++...|++++|...|+++.+..+. +..+..+.... ...+..+.++..++++++..|
T Consensus 259 --------~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 259 --------EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp --------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred --------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 344 4578899999999999999999999999776654 33444333332 334667788889999999988
Q ss_pred HHH
Q 038801 651 LIA 653 (662)
Q Consensus 651 ~~~ 653 (662)
.+.
T Consensus 331 ~~~ 333 (338)
T 2if4_A 331 EGG 333 (338)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.77 E-value=0.00043 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 442 DALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
..+..++...|++++|...|++..+
T Consensus 43 ~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 43 YWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.75 E-value=0.00038 Score=71.17 Aligned_cols=120 Identities=11% Similarity=-0.007 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN----------------DQTYLSLINGYVTAEQYFSVLMMWHEIKRK 573 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 573 (662)
..|..+...|.+.|++++|...|++.++. .|+ ...|..+..+|.+.|++++|+..++++.+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG- 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 45667777778888888888888887763 333 47888999999999999999999999993
Q ss_pred hcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHH
Q 038801 574 ISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKL 640 (662)
Q Consensus 574 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~ 640 (662)
+.| +...|..+..++.+.|++++|+..|+++.+..+. +..+..+.......++.+.+.+
T Consensus 346 --------~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 346 --------LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --------cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334 4578888999999999999999999999887765 5566666666666777766553
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.71 E-value=0.0002 Score=61.37 Aligned_cols=100 Identities=7% Similarity=-0.057 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038801 510 HDWNSIIHAFCKAGRLEDAKRTLRRMIFL--------QF--------EPN-DQTYLSLINGYVTAEQYFSVLMMWHEIKR 572 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~--------~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 572 (662)
..+......+.+.|++++|...|.+.+.. .. .|. ...|..+..+|.+.|++++|+..++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al- 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL- 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-
Confidence 35666777788888888888888887763 00 222 3578888999999999999999999999
Q ss_pred hhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 573 KISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 573 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
.+.|+ ...|..+..++...|++++|...+++..+..+.
T Consensus 91 --------~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 --------KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp --------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred --------hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 23454 578888999999999999999999999887655
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.69 E-value=0.00012 Score=62.75 Aligned_cols=110 Identities=8% Similarity=-0.048 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCC---------cc-cHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 544 DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGI---------KF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 544 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
...+......+.+.|++++|+..|++....++.....+- .| +..+|..+..++.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 356778888999999999999999999854321100000 22 23678888999999999999999999998
Q ss_pred hCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHHH
Q 038801 614 EMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALIA 653 (662)
Q Consensus 614 ~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~ 653 (662)
+.++. +..+..+...+...|+++.|...++++++++|.+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 87655 44666666677778999999999999999999854
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.68 E-value=0.00038 Score=58.07 Aligned_cols=101 Identities=16% Similarity=0.033 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccc
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN--------D-----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTD 577 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 577 (662)
.+......+.+.|++++|+..|++.++. .|+ . ..|..+..++.+.|++++|+..+++..+.+..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~- 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR- 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc-
Confidence 4556667777889999999999888874 444 2 38999999999999999999999999942111
Q ss_pred CCCCCcccH-HHH----HHHHHHHHccCchHHHHHHHHHHHhC
Q 038801 578 GQKGIKFEH-NLV----DAFLYALVKGGFFDAVMQVVEKSQEM 615 (662)
Q Consensus 578 ~~~~~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 615 (662)
.-.+.|+. ..| .....++...|++++|+..|++..+.
T Consensus 90 -~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 90 -RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp -HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 01226765 677 88899999999999999999998654
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.67 E-value=0.00029 Score=69.56 Aligned_cols=119 Identities=13% Similarity=0.034 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFL--------------QFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 576 (662)
|..+...+.+.|++++|.+.|++.++. ...| +...|..+..+|.+.|++++|++.++++.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al----- 300 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL----- 300 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-----
Confidence 445555556666666666666655540 0123 23577777788888888888888888888
Q ss_pred cCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhH
Q 038801 577 DGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAK 639 (662)
Q Consensus 577 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~ 639 (662)
.+.| +...+..+..++.+.|++++|.+.++++.+..+. +..+..+.......++.+.+.
T Consensus 301 ----~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 301 ----EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp ----TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2344 3467777778888888888888888888766554 333333333344445544443
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.62 E-value=0.0006 Score=69.65 Aligned_cols=143 Identities=6% Similarity=-0.035 Sum_probs=97.5
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
....|..+...|.+.|++++|...|++.++..- .+. .+ ..+...+ .+.. ....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p-~~~-~~-----------~~~~~~~-~~~~--------~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLE-MEY-GL-----------SEKESKA-SESF--------LLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TCC-SC-----------CHHHHHH-HHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccc-cC-----------ChHHHHH-HHHH--------HHHHHHHHH
Confidence 355677788888888888888888888876531 111 00 0000000 0000 134678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHH
Q 038801 517 HAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLY 594 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~ 594 (662)
.+|.+.|++++|+..+++.++. .| +...|..+..+|...|++++|+..|+++. .+.|+. ..+..+..
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---------~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVL---------EVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------TTC----CHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHH---------HhCCCCHHHHHHHHH
Confidence 8888999999999999988875 34 55788888888999999999999999888 345543 67777777
Q ss_pred HHHccCchHHHHH-HHHHH
Q 038801 595 ALVKGGFFDAVMQ-VVEKS 612 (662)
Q Consensus 595 ~~~~~g~~~~A~~-~~~~m 612 (662)
++.+.|+.++|.+ .+++|
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888887764 34444
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.61 E-value=0.00071 Score=69.01 Aligned_cols=129 Identities=5% Similarity=-0.106 Sum_probs=94.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CC---CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHH
Q 038801 518 AFCKAGRLEDAKRTLRRMIFL---QF---EPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLV 589 (662)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~---~~---~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~ 589 (662)
.+...|++++|+.++++.++. -+ .|+. .+++.|..+|...|++++|+.++++..+..+..-.. -.|+. .++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l 396 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAV 396 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 456789999999999887762 12 2333 589999999999999999999999988665542111 23444 788
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHh-----CCCC-CCHHhH--HHHHH-HHhhhhhhhHHHHHHHHh
Q 038801 590 DAFLYALVKGGFFDAVMQVVEKSQE-----MKVF-VDKWKY--KQAFM-ENHKKLKVAKLRKRNFKK 647 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~~~~--~~~~~-~~~~~~~~a~~~~~~~~~ 647 (662)
+.|...|...|++++|..++++..+ .|.. |++... ++..+ ...+.++.|+.+++++++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 4655 443322 24444 346788888888887764
No 192
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.61 E-value=0.00014 Score=74.75 Aligned_cols=89 Identities=9% Similarity=-0.004 Sum_probs=47.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQS 456 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 456 (662)
.+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|.+.+++..+... -+...|..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHH
Confidence 3445556666666666555542 33455555555555555666666555555555421 134455555555555555555
Q ss_pred HHHHHHHHHHc
Q 038801 457 AFSLFRDMREA 467 (662)
Q Consensus 457 A~~~~~~m~~~ 467 (662)
|.+.|++..+.
T Consensus 93 A~~~~~~al~~ 103 (477)
T 1wao_1 93 ALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555544
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=9.8e-05 Score=58.31 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=64.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-
Q 038801 508 KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE- 585 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~- 585 (662)
+...|..+...+...|++++|.+.|++..+. .| +...|..+..++...|++++|++.+++.. .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---------RYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------TSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------HhCCCc
Confidence 3456777777888888888888888888775 34 55677788888888888888888888888 33343
Q ss_pred ------HHHHHHHHHHHHccCchHHHHHHHHH
Q 038801 586 ------HNLVDAFLYALVKGGFFDAVMQVVEK 611 (662)
Q Consensus 586 ------~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
...+..+..++...|+.++|.+.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 34455555566666666665554433
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.46 E-value=0.00091 Score=65.99 Aligned_cols=115 Identities=8% Similarity=0.002 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHH
Q 038801 330 KETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPT 409 (662)
Q Consensus 330 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 409 (662)
...|..+...+.+.|++++|++.|++..++.+. .......+++ ... .+.+..+|..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~---------------~~~~~~~~~~-------~~~-~~~~~~~~~nl 279 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG---------------SRAAAEDADG-------AKL-QPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------HHHHSCHHHH-------GGG-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc---------------CccccChHHH-------HHH-HHHHHHHHHHH
Confidence 345666777777777777777777776541100 0000000000 000 01234566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 410 LKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
..+|.+.|++++|...+++..+... .+...|..+..+|...|++++|+..|++..+..
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 6667777777777777777666421 145566666666777777777777776666553
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.42 E-value=0.00035 Score=68.14 Aligned_cols=61 Identities=5% Similarity=-0.094 Sum_probs=34.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038801 440 NYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVE 501 (662)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 501 (662)
.|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666666666666665543 33444555555555555555555555555543
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.35 E-value=0.0033 Score=65.75 Aligned_cols=169 Identities=11% Similarity=0.023 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcC-
Q 038801 455 QSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR----------PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAG- 523 (662)
Q Consensus 455 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 523 (662)
++|++.++++.+.+ |.+...|+.--..+...|+ ++++.+.++++.+..+ -+..+|+.-...+.+.|
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccc
Confidence 45555555555543 3333344444444444444 6677777777766422 24456777777777888
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHcc-
Q 038801 524 -RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAE-QYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKG- 599 (662)
Q Consensus 524 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~- 599 (662)
+++++++.++++.+.. .-|...|+.-..++.+.| .++++++.++++. + ..| |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-------~--~~p~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-------T--RNFSNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-------T--TTCCCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHH-------H--HCCCCccHHHHHHHHHHhhc
Confidence 6799999999998864 236678888777777778 8888998888888 3 334 446666666665552
Q ss_pred -------------CchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhh
Q 038801 600 -------------GFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLK 636 (662)
Q Consensus 600 -------------g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~ 636 (662)
+.+++++++++++...++. +..|.|....+...+..+
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 6689999999998877765 668888877776655533
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.24 E-value=0.012 Score=61.41 Aligned_cols=170 Identities=7% Similarity=-0.062 Sum_probs=107.5
Q ss_pred hhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCcccccchHHHHHH
Q 038801 307 LESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGN----------VKGLANLIIEAQKLEPSGIVVDRSVGFGIIS 376 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~ 376 (662)
.++|++.+.+++...+. +...|+.--.++...|+ ++++++.++++.+..++ +..+|+.-..
T Consensus 45 ~eeal~~~~~~l~~nP~-----~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK----~y~aW~hR~w 115 (567)
T 1dce_A 45 DESVLELTSQILGANPD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----SYGTWHHRCW 115 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHH
Confidence 34556666666655322 44556555555555554 67777777777654333 3344555555
Q ss_pred HHHhcC--ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC--
Q 038801 377 ACVNLG--LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEH-RTAEATQLVMDISSSGLQLDVGNYDALIEASITS-- 451 (662)
Q Consensus 377 ~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-- 451 (662)
.+.+.+ +++++.+.++++.+.. +-|-..|+.-..++.+.| .++++.+.++++.+..+. |...|+.....+.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSC
T ss_pred HHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcc
Confidence 556666 5577777777777765 456667777777777777 777788887777766432 666777666665542
Q ss_pred ------------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 452 ------------QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 452 ------------g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
+.++++++.+++..... |.+...|..+-..+.+.++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 45677888888777765 5566667766666666555
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.20 E-value=0.0048 Score=48.79 Aligned_cols=76 Identities=16% Similarity=-0.001 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHH
Q 038801 528 AKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAV 605 (662)
Q Consensus 528 A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 605 (662)
|.+.|++..+. .| +...+..+...|...|++++|+..|++..+ ..| +...+..+..++.+.|++++|
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD---------FDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------HCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 44555555543 23 334555555666666666666666666551 122 234555555566666666666
Q ss_pred HHHHHHHHh
Q 038801 606 MQVVEKSQE 614 (662)
Q Consensus 606 ~~~~~~m~~ 614 (662)
...+++..+
T Consensus 73 ~~~~~~al~ 81 (115)
T 2kat_A 73 RQAWESGLA 81 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.11 E-value=0.014 Score=48.05 Aligned_cols=110 Identities=10% Similarity=-0.063 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHH
Q 038801 345 NVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK----EHRTA 420 (662)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~ 420 (662)
+.++|+++|++..+ .+ .++ .. +...|...+.+++|.+.|++..+.| +...+..|...|.. .++++
T Consensus 10 d~~~A~~~~~~aa~---~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 10 DLKKAIQYYVKACE---LN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHH---TT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHc---CC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 45556666655544 22 111 11 3344444455555666666665553 34455555555555 55666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcC
Q 038801 421 EATQLVMDISSSGLQLDVGNYDALIEASIT----SQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 421 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 468 (662)
+|.++|++..+.| +...+..|...|.. .++.++|...|++..+.|
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666665543 34445555555555 555666666666555554
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.08 E-value=0.0023 Score=50.72 Aligned_cols=78 Identities=13% Similarity=-0.023 Sum_probs=39.8
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 387 AHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
+...|++..+.. +.+...+..+..+|...|++++|...|++..+... .+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554433 33445555555555555555555555555554421 1344455555555555555555555555443
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.02 E-value=0.0012 Score=54.86 Aligned_cols=88 Identities=11% Similarity=0.028 Sum_probs=69.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhhcccCCCCCcccH-H
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEP-NDQTYLSLINGYVTAEQY----------FSVLMMWHEIKRKISTDGQKGIKFEH-N 587 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~p~~-~ 587 (662)
.+.+.+++|.+.+++..+. .| +...|..+..++...+++ ++|+..|++.. .+.|+. .
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---------~ldP~~~~ 81 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---------LIDPKKDE 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---------HHCTTCHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---------HhCcCcHH
Confidence 4566788888888888875 45 556787787787777654 59999999998 566654 7
Q ss_pred HHHHHHHHHHccC-----------chHHHHHHHHHHHhCCCC
Q 038801 588 LVDAFLYALVKGG-----------FFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 588 ~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~~ 618 (662)
.|..+..+|.+.| ++++|++.|++..+.++.
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 8899999998874 899999999999887665
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0023 Score=50.11 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcc-cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKF-EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+...+..+...+...|++++|++.|++..+ +.| +...+..+..++.+.|++++|++.+++..+..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT---------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 456788889999999999999999999993 234 4578888999999999999999999999887665
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.99 E-value=0.011 Score=48.56 Aligned_cols=84 Identities=8% Similarity=-0.004 Sum_probs=46.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038801 481 TGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCK----AGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVT 556 (662)
Q Consensus 481 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 556 (662)
..|...+..+.|.++|++..+. + +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYA 105 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHC
Confidence 3333334444455555544443 1 23345555555555 566666777666666643 44555556666665
Q ss_pred ----cCCHHHHHHHHHHHH
Q 038801 557 ----AEQYFSVLMMWHEIK 571 (662)
Q Consensus 557 ----~~~~~~a~~~~~~m~ 571 (662)
.+++++|++.|++..
T Consensus 106 G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHH
Confidence 566777777776666
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.0028 Score=63.53 Aligned_cols=92 Identities=8% Similarity=-0.091 Sum_probs=72.5
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCC-CcccH-HHHHH
Q 038801 521 KAGRLEDAKRTLRRMIFL---QFEP---ND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKG-IKFEH-NLVDA 591 (662)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~---~~~p---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~p~~-~~~~~ 591 (662)
..|++++|+.++++.++. -+.| +. .+++.|..+|...|++++|+.+++++.+..+.. .| -.|+. .+++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH--YPVYSLNVASMWLK 387 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--SCSSCHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH--cCCCChHHHHHHHH
Confidence 357889999998887752 2233 33 589999999999999999999999998665542 22 24554 78999
Q ss_pred HHHHHHccCchHHHHHHHHHHHh
Q 038801 592 FLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
|...|...|++++|..++++..+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999998743
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.92 E-value=0.0055 Score=45.71 Aligned_cols=62 Identities=18% Similarity=0.374 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...+..+...+...|++++|...|++..+.. ..+...+..+..++...|++++|+..+++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567777778888888888888888887642 2245677788888888888888888888887
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.91 E-value=0.0025 Score=49.04 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=34.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 038801 402 GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (662)
+...+..+..+|.+.|++++|...|++..+.... +...|..+..+|...|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555556666666666666655554211 344555555555556666666555555543
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.91 E-value=0.012 Score=56.56 Aligned_cols=74 Identities=9% Similarity=-0.019 Sum_probs=60.3
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc
Q 038801 506 EVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE 585 (662)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~ 585 (662)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.. .+.|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---------rL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---------NLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------hcCCC
Confidence 3456678887777777899999999999999864 888888888888888999999999999888 45677
Q ss_pred HHHHH
Q 038801 586 HNLVD 590 (662)
Q Consensus 586 ~~~~~ 590 (662)
..+|.
T Consensus 343 ~~t~~ 347 (372)
T 3ly7_A 343 ANTLY 347 (372)
T ss_dssp HHHHH
T ss_pred cChHH
Confidence 76654
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.89 E-value=0.0073 Score=45.01 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREA 467 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (662)
.+..+...+...|++++|...|++..+.. ..+...+..+..++.+.|++++|...|++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444444555555555554444431 113334444444455555555555555544443
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.86 E-value=0.005 Score=61.74 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=75.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCC---H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-H
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQ---FEPN---D-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-N 587 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~---~~p~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~ 587 (662)
+..+.+.|++++|+.++++.++.. +.|+ . .+++.|..+|...|++++|+.+++++.+..+..-. ...|+. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHHHH
Confidence 344567789999999999888631 2333 2 58999999999999999999999998866554211 224444 7
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 588 LVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
+++.|...|...|++++|..+++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88999999999999999999999875
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.81 E-value=0.0021 Score=53.48 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038801 489 PELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA-----------GRLEDAKRTLRRMIFLQFEPNDQTYLSLING 553 (662)
Q Consensus 489 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 553 (662)
+++|+..|++..+-.+- +...|..+..+|... |++++|.+.|++.++ +.|+...|...+..
T Consensus 62 ~~eAi~~le~AL~ldP~--~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK--KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45666666666653111 244677777777665 489999999999987 47877666544443
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.80 E-value=0.012 Score=58.95 Aligned_cols=68 Identities=10% Similarity=-0.031 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFL------QFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 576 (662)
..+++.+...|...|++++|+.++++.++. .-.|+. .+++.|...|...|++++|+.+++++.+.+..
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999887751 123444 58899999999999999999999998866553
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.79 E-value=0.0048 Score=47.39 Aligned_cols=68 Identities=10% Similarity=-0.096 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 585 EHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF-VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 585 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
+...+..+..++.+.|++++|++.++++.+.++. ++.|..+...+...|+.+.|...+++++++.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4577888999999999999999999999887765 5677777777788899999999999999998754
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.0091 Score=59.75 Aligned_cols=67 Identities=13% Similarity=0.019 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFL-----Q-FEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 575 (662)
..+++.|..+|...|++++|+.++++.++. | -.|+. .+|+.|...|...|++++|+.++++..+...
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999888751 2 23555 5899999999999999999999999886544
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.50 E-value=0.0067 Score=46.28 Aligned_cols=86 Identities=9% Similarity=-0.086 Sum_probs=64.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCccc-HH-HHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHH
Q 038801 550 LINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFE-HN-LVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQA 627 (662)
Q Consensus 550 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ 627 (662)
....+...|++++|+..++++.+ ..|+ .. .+..+..++.+.|++++|.+.+++..+.++.......
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~---------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--- 73 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ---------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA--- 73 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH---------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH---
Confidence 45567788999999999999982 3443 46 7888999999999999999999999887665322111
Q ss_pred HHHHhhhhhhhHHHHHHHHhhHHH
Q 038801 628 FMENHKKLKVAKLRKRNFKKMEAL 651 (662)
Q Consensus 628 ~~~~~~~~~~a~~~~~~~~~l~p~ 651 (662)
.+.+..+...+++...++|.
T Consensus 74 ----~~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 74 ----RKMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp ----HHHHHHHHHHHCCTTHHHHC
T ss_pred ----HHHHHHHHHHHHHHhccCcc
Confidence 15666677777777777664
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.21 E-value=0.33 Score=38.31 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=93.4
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHH
Q 038801 448 SITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLED 527 (662)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (662)
+.-.|..++..++..+..... +..-||.++.-....-+-+-..+.++.+-+-+.+.+ +|+...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 344577777777777776542 234567777777777777777777777765443332 334433
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHH
Q 038801 528 AKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQ 607 (662)
Q Consensus 528 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
...-+-.+ ..+...++..++....+|+-++-.+++.++. . ..+|++...-.+..||.+-|+..+|.+
T Consensus 80 Vi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l-------~-n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 80 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREIL-------K-NNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHh-------c-cCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 33333222 2234556666777788888888888888764 1 556777788888888888888888888
Q ss_pred HHHHHHhCCCC
Q 038801 608 VVEKSQEMKVF 618 (662)
Q Consensus 608 ~~~~m~~~~~~ 618 (662)
++.++.+.|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 88888888864
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.14 E-value=0.22 Score=54.90 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=99.1
Q ss_pred CChhHHHH-HHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHH
Q 038801 235 QSVSDAEK-VIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRT 313 (662)
Q Consensus 235 ~~~~~a~~-~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 313 (662)
+++++|.+ ++..+. +......++..+.+.|..+.|.++.+. +. .-.......|++++|.++
T Consensus 613 ~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 613 GEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDL 674 (814)
T ss_dssp TCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHH
Confidence 88999877 552211 011236677788888999988876531 11 113445678999999887
Q ss_pred HHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHH
Q 038801 314 ILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDE 393 (662)
Q Consensus 314 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 393 (662)
. +.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+.
T Consensus 675 ~-~~~---------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 675 L-TDE---------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp H-TTC---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-Hhh---------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 3 111 2678999999999999999999999998753 45566666667777776666655
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 038801 394 MNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDI 429 (662)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 429 (662)
....| -++....+|.+.|++++|.+++.++
T Consensus 733 a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 733 AETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55554 2344444566666666666665544
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.05 E-value=0.063 Score=51.51 Aligned_cols=143 Identities=10% Similarity=-0.017 Sum_probs=86.7
Q ss_pred chhhHHHHHHHHH--hcC---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cC--CHHHHHHHHHHHHHhhcc
Q 038801 508 KTHDWNSIIHAFC--KAG---RLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVT---AE--QYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 508 ~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~---~~--~~~~a~~~~~~m~~~~~~ 576 (662)
+...|...+.+.. ..+ +..+|..+|++.++. .|+. ..|..+..+|.. .+ ....... +.+..+....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~-l~~a~~a~~a 269 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAA-LNTEIDNIVT 269 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHH-HHHHHHHHHh
Confidence 4455666665543 222 357788888888874 6764 344444333331 01 1111111 1111111110
Q ss_pred cCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHhhhhhhhHHHHHHHHhhHHHHHH
Q 038801 577 DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWK--YKQAFMENHKKLKVAKLRKRNFKKMEALIAF 654 (662)
Q Consensus 577 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~~~~~~~~~~~~a~~~~~~~~~l~p~~~~ 654 (662)
......+..+|..+...+...|++++|...++++.+.+ |+... .+.......|+.+.|...+++++.++|...-
T Consensus 270 --~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 270 --LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp --CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred --cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 11224466888888777778899999999999999887 44333 2233445679999999999999999998764
Q ss_pred Hhh
Q 038801 655 KNW 657 (662)
Q Consensus 655 ~~~ 657 (662)
-.|
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.99 E-value=0.2 Score=55.33 Aligned_cols=101 Identities=9% Similarity=0.049 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038801 334 CEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY 413 (662)
Q Consensus 334 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (662)
..++..+.+.|..++|+++.++-. .-.......|++++|.++.+.+ .+...|..+...+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~---------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~a 691 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD---------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDAS 691 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH---------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc---------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHH
Confidence 555666666666666665542211 1122334557777776664322 3456677777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 038801 414 CKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDM 464 (662)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (662)
.+.|+++.|++.|.++.+ |..+...|...|+.+...++-+..
T Consensus 692 l~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 692 LQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777766542 333444444455555544443333
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.67 Score=39.05 Aligned_cols=129 Identities=7% Similarity=0.020 Sum_probs=80.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHH
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 491 (662)
...+.|+++.|.++.+++. +...|..|.+.....|+++-|.+.|.+.. -+..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCCHHH
Confidence 3456677777777766551 56777777777777777777777777653 35556666666677666
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
..++-+....+ | -++....++...|+++++.++|.+.-. .|....+ ....|..+.|.++.+++-
T Consensus 79 L~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~~------A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 79 LSKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYAV------AKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHHH------HHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHHH------HHHcCcHHHHHHHHHHhC
Confidence 55554444332 1 256666667777888888888765542 3322111 112466677777776654
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.77 E-value=0.021 Score=46.88 Aligned_cols=85 Identities=13% Similarity=0.011 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccC---chHHHHHHHHHHHhCC-C--CCCHHhHHHHHHHHhh
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGG---FFDAVMQVVEKSQEMK-V--FVDKWKYKQAFMENHK 633 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~-~--~p~~~~~~~~~~~~~~ 633 (662)
...+.+-|++.. ..+. ++..+...+.+++++++ ++++++.++++..+.+ + ..|.+.++...+...|
T Consensus 14 l~~~~~~y~~e~-------~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 14 LLKFEKKFQSEK-------AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHH-------HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHH-------ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHcc
Confidence 344555555555 3343 67788888899999998 7779999999998876 3 2567777777778899
Q ss_pred hhhhhHHHHHHHHhhHHHH
Q 038801 634 KLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 634 ~~~~a~~~~~~~~~l~p~~ 652 (662)
+++.|++..+++++++|.+
T Consensus 86 ~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 86 EYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999954
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.76 E-value=0.15 Score=39.09 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCC
Q 038801 543 NDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 543 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
+..-.-.|...+...|+++.|...++++.+..+.... .-.+...++..|..++.+.|++++|..+++++.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 4455567888889999999999999999865543211 12345578899999999999999999999999876655
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.72 E-value=0.12 Score=42.34 Aligned_cols=86 Identities=9% Similarity=0.039 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhhcccCCCCCcc--cHHHHHHHHHHHHc
Q 038801 524 RLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAE---QYFSVLMMWHEIKRKISTDGQKGIKF--EHNLVDAFLYALVK 598 (662)
Q Consensus 524 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~p--~~~~~~~l~~~~~~ 598 (662)
....+.+-|.+..+.| .++..+.-.+..++++.+ +.++++.++++.. +.+ .| ....+-.|.-++.+
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll-------~~~-~p~~~rd~lY~LAv~~~k 83 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL-------PKG-SKEEQRDYVFYLAVGNYR 83 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-------HHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcC-CccchHHHHHHHHHHHHH
Confidence 3456667777666655 367777777788888877 6668999999888 332 24 23555666777889
Q ss_pred cCchHHHHHHHHHHHhCCCC
Q 038801 599 GGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 599 ~g~~~~A~~~~~~m~~~~~~ 618 (662)
.|++++|.++++.+.+..|.
T Consensus 84 l~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 84 LKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp TSCHHHHHHHHHHHHHHCTT
T ss_pred ccCHHHHHHHHHHHHhcCCC
Confidence 99999999999998776654
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.48 Score=39.93 Aligned_cols=129 Identities=12% Similarity=0.043 Sum_probs=85.7
Q ss_pred HHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHH
Q 038801 299 SGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISAC 378 (662)
Q Consensus 299 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~ 378 (662)
+.....|+++.|.++..+. . +...|..|.......|+++-|.+.|.+... +..+.-.|
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~--------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly 70 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--N--------DSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLY 70 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--C--------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHH
Confidence 4456778888888874333 1 677899999999999999999888887542 45566667
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 038801 379 VNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAF 458 (662)
Q Consensus 379 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 458 (662)
...|+.+...++-+.....| -++.....+.-.|+++++.++|.+..+ -|.. ....-..|-.+.|.
T Consensus 71 ~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAAS 135 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHH
Confidence 77788877776666666555 355566667778888888888855432 1111 11112245667777
Q ss_pred HHHHHH
Q 038801 459 SLFRDM 464 (662)
Q Consensus 459 ~~~~~m 464 (662)
++.+++
T Consensus 136 ~~~~~~ 141 (177)
T 3mkq_B 136 AFLEQA 141 (177)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776655
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.52 E-value=0.69 Score=36.55 Aligned_cols=137 Identities=16% Similarity=0.077 Sum_probs=62.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 038801 381 LGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSL 460 (662)
Q Consensus 381 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 460 (662)
.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|... .|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~----------C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDK----------CQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGG----------CSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcHh----------hhcHHHHHHH
Confidence 46666666666666553 24455555555444444444444444444321 22211 1222222222
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038801 461 FRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQF 540 (662)
Q Consensus 461 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 540 (662)
+-.+- -+...+..-++.+...|+-+.-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 22211 1112333444445555555555555555433 2233334444555555555555555555555555553
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.43 E-value=0.064 Score=40.19 Aligned_cols=72 Identities=3% Similarity=-0.139 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 542 PNDQTYLSLINGYVTAEQ---YFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 542 p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.|...+..+..++...++ .++|..++++.. ...|+. .....+...+.+.|++++|+..|+++.+.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL---------~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL---------QLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---------HHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777777765544 689999999998 455654 6777778889999999999999999988877
Q ss_pred CCCHHh
Q 038801 618 FVDKWK 623 (662)
Q Consensus 618 ~p~~~~ 623 (662)
. +.+.
T Consensus 75 ~-~~~~ 79 (93)
T 3bee_A 75 P-NLDR 79 (93)
T ss_dssp T-TCCH
T ss_pred C-CccH
Confidence 6 4443
No 226
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.07 E-value=0.11 Score=39.12 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=36.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCC-Chh-hHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQL-DVG-NYDALIEASITSQDFQSAFSLFRDMREAR 468 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (662)
....+.+.|++++|...|++..+. .| +.. .|..+..+|...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344566667777777777766655 23 344 56666666666677777777776666653
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.06 E-value=0.18 Score=37.69 Aligned_cols=62 Identities=10% Similarity=0.170 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 508 KTHDWNSIIHAFCKAGR---LEDAKRTLRRMIFLQFEPN-DQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 508 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
+...+..+..++...++ .++|..++++.++. .|+ ......+...+...|++++|+..|+++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45567777777765555 68999999999885 564 4678888888899999999999999998
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.77 E-value=0.18 Score=46.34 Aligned_cols=105 Identities=8% Similarity=0.019 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhCCCCccchhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhc-CCHHH
Q 038801 491 LMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKA-----GRLEDAKRTLRRMIFLQFEPN--DQTYLSLINGYVTA-EQYFS 562 (662)
Q Consensus 491 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~-~~~~~ 562 (662)
.|...+++..+-.+-..+...|..+...|.+. |+.++|.+.|++.++. .|+ ..++......++.. |+.++
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34444444443212222345677777777774 8888888888888874 563 56777777777774 88888
Q ss_pred HHHHHHHHHHhhcccCCCCCc--ccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 563 VLMMWHEIKRKISTDGQKGIK--FEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 563 a~~~~~~m~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
+.+.+++.. ..... |+....+. ++-++|..+++++
T Consensus 259 a~~~L~kAL-------~a~p~~~P~~~lan~--------~~q~eA~~LL~~~ 295 (301)
T 3u64_A 259 FDEALDRAL-------AIDPESVPHNKLLVI--------LSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHH-------HCCGGGCSSCHHHHH--------HHHHHHHHHHHTH
T ss_pred HHHHHHHHH-------cCCCCCCCChhHHHH--------HHHHHHHHHHHHh
Confidence 888888888 44444 55443333 3445555555544
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.15 E-value=0.2 Score=38.41 Aligned_cols=63 Identities=5% Similarity=-0.090 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 509 THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ------FEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
..-+-.|...+.+.|+++.|...|+...+.- -.+....+..|..++.+.|++++|+.+++++.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445677788888888888888888877631 12344678888899999999999999999888
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.14 E-value=0.38 Score=44.21 Aligned_cols=85 Identities=11% Similarity=0.007 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhhcccCCCCCccc--HHHHHHHHH
Q 038801 525 LEDAKRTLRRMIFLQFEPN---DQTYLSLINGYVTA-----EQYFSVLMMWHEIKRKISTDGQKGIKFE--HNLVDAFLY 594 (662)
Q Consensus 525 ~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~p~--~~~~~~l~~ 594 (662)
...|..++++.++ +.|+ -..|..|...|... |+.++|.+.|++.. .+.|+ ..++..+..
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL---------~LnP~~~id~~v~YA~ 247 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT---------RYCSAHDPDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH---------HHCCTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH---------HhCCCCCchHHHHHHH
Confidence 5678888888887 4777 35899999999984 99999999999999 45553 456666777
Q ss_pred HHHc-cCchHHHHHHHHHHHhCCCC--CC
Q 038801 595 ALVK-GGFFDAVMQVVEKSQEMKVF--VD 620 (662)
Q Consensus 595 ~~~~-~g~~~~A~~~~~~m~~~~~~--p~ 620 (662)
.+++ .|+.++|.+.+++....++. |+
T Consensus 248 ~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 248 ALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 7877 59999999999999998888 55
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.75 E-value=0.84 Score=35.92 Aligned_cols=90 Identities=9% Similarity=0.015 Sum_probs=63.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhhcccCCCCCcc--cHHHHHHHHH
Q 038801 520 CKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFS---VLMMWHEIKRKISTDGQKGIKF--EHNLVDAFLY 594 (662)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~~~~~~~~p--~~~~~~~l~~ 594 (662)
........+.+-|.+....| .|+..+--.+..++.+..+..+ ++.++++.. ..+ .| .....-.|.-
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~-~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKG-SKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTS-CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcC-CcchHHHHHHHHHH
Confidence 33445566667776666655 3677666677778888776665 889998888 433 24 2345556667
Q ss_pred HHHccCchHHHHHHHHHHHhCCCC
Q 038801 595 ALVKGGFFDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~m~~~~~~ 618 (662)
++.+.|++++|.++++.+.+..|.
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCC
Confidence 888999999999999999876654
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.55 E-value=0.24 Score=40.04 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHHhhcc
Q 038801 510 HDWNSIIHAFCKAGRL------EDAKRTLRRMIFLQFEPNDQ----TYLSLIN---GYVTAEQYFSVLMMWHEIKRKIST 576 (662)
Q Consensus 510 ~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~ 576 (662)
.+|-..+...-+.|+. ++..++|++.... +.|+.. .|--|.- .+...++.++|.++|+.++..
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~--- 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN--- 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---
Confidence 3455555555555666 6677777777763 455421 1211111 112248899999999999842
Q ss_pred cCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCH
Q 038801 577 DGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDK 621 (662)
Q Consensus 577 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 621 (662)
.-.. ..+|......-.+.|+++.|.+++.+....++.|..
T Consensus 90 ----hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 90 ----CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp ----CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred ----hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 2222 667777777778999999999999999988887753
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.19 E-value=0.00064 Score=66.39 Aligned_cols=238 Identities=12% Similarity=0.055 Sum_probs=126.0
Q ss_pred hhhhHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHH
Q 038801 67 NITSLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVH 146 (662)
Q Consensus 67 ~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (662)
|+..|..++.+..+.|.+++.+..+.-.++.. -++..=+.|+-+|++.++..++++.+ ..|+..-..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl-----------~~~N~A~iq 148 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-----------NGPNNAHIQ 148 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT-----------SCCSSSCTH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH-----------cCCCcccHH
Confidence 44445555555555555555555444443321 12223344555555555544443333 112222333
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHH
Q 038801 147 TLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAA 226 (662)
Q Consensus 147 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (662)
.+..-|...|.++.|.-+|..+.... .|...+.+.|++..|.+.-. .-.++.||-.+
T Consensus 149 ~VGDrcf~e~lYeAAKilys~isN~a----------kLAstLV~L~~yq~AVdaAr-------------KAns~ktWKeV 205 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNVSNFG----------RLASTLVHLGEYQAAVDGAR-------------KANSTRTWKEV 205 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGSCCCT----------TTSSSSSSCSGGGSSTTTTT-------------TCCSSCSHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHhCccHH----------HHHHHHHHHHHHHHHHHHHH-------------hcCChhHHHHH
Confidence 44555555555555554444432211 11122224455444443222 23466789888
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGN 306 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 306 (662)
-.+|... +.+..|.-+--.+.- .||. ...++.-|-..|.+++-..+++.-.... ......++-|.-.|+|- +
T Consensus 206 ~~ACvd~-~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 206 CFACVDG-KEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp THHHHHS-CTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-C
T ss_pred HHHHhCc-hHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-C
Confidence 8999997 888888766555542 3332 3346677888899998888888766432 35678888888888886 4
Q ss_pred hhhHHHHHHHHHcCCCCCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 038801 307 LESASRTILLCLGGGNMEQSDF------SKETYCEVVKGFLQNGNVKGLAN 351 (662)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~~~~~~a~~ 351 (662)
.++..+-+ ++.-.+. +++. ....|..++-.|++-.++|.|..
T Consensus 278 PeKlmEHl-klf~sri--NipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 278 PQKMREHL-ELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTHHHHHH-TTSSSSS--CCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHH-HHHHHhc--cHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 44444432 2222211 1110 23346666666776666666553
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.02 E-value=4 Score=40.86 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCCC--ccc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSS--GLQLD---VGNYDALIEASITSQDFQSAFSLFRDMREA----RIYDL--KGS 475 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~ 475 (662)
..|...|...|++.+|.+++.++... |.... +..|...++.|...+++.+|..+++++... ..+|+ ..-
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666655422 11110 234445555566666666666666655321 11111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVE 501 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 501 (662)
|...+..+...+++.+|...|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33334444555666666555555543
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.83 E-value=11 Score=39.49 Aligned_cols=117 Identities=3% Similarity=-0.033 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHhhCCCCccch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038801 488 RPELMAAFLDEVVEDPRVEVKT--HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLM 565 (662)
Q Consensus 488 ~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 565 (662)
+.+.|...+..........+.. ..+..+...+...+...++...+...... .++.....-.+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 6789999998887643443322 12333333333445355677777766543 3454444444555557799999999
Q ss_pred HHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHh
Q 038801 566 MWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQE 614 (662)
Q Consensus 566 ~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 614 (662)
.|+.|. ..... ...-.--+.+++.+.|+.++|..+|+.+.+
T Consensus 307 ~~~~l~-------~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLP-------MEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSC-------TTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcc-------ccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 998877 32211 233233456678889999999999999864
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.80 E-value=0.32 Score=38.34 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHH---HHHHHHHHHhCC-C--CCCHHhHHHHHHHH
Q 038801 558 EQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDA---VMQVVEKSQEMK-V--FVDKWKYKQAFMEN 631 (662)
Q Consensus 558 ~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~~-~--~p~~~~~~~~~~~~ 631 (662)
.....+.+-+++.. ..|. ++..+--.+.++++++.+... ++.++++....+ + .-+...++..++..
T Consensus 15 ~~l~~~~~~y~~e~-------~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 15 EDLLKFEKKFQSEK-------AAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHH-------HHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 33444555555554 3333 677777778899999888766 999999987765 2 12355555667788
Q ss_pred hhhhhhhHHHHHHHHhhHHHH
Q 038801 632 HKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 632 ~~~~~~a~~~~~~~~~l~p~~ 652 (662)
.|+++.|++..+.+++.+|.+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999954
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.44 E-value=2.6 Score=34.14 Aligned_cols=102 Identities=13% Similarity=0.034 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCCcccccch----HHHHH---HHHHhcCChHHHHHHHHHHH
Q 038801 329 SKETYCEVVKGFLQNGNV------KGLANLIIEAQKLEPSGIVVDRSV----GFGII---SACVNLGLSDKAHSILDEMN 395 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~~~~~----~~~ll---~~~~~~~~~~~a~~~~~~m~ 395 (662)
|..+|-..+.-.-+.|+. ++..++|++... .++|+... |.-+- ..+...+++++|.++|+.++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia----~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE----ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH----HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH----cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777888888887777888 777788887664 44443211 11110 01122356666677776665
Q ss_pred HCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 038801 396 ACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ 435 (662)
Q Consensus 396 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (662)
+..-.- ..+|......-.+.|++++|.+++......+.+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 532111 444444444455666666666666666665544
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.37 E-value=15 Score=40.14 Aligned_cols=156 Identities=14% Similarity=0.163 Sum_probs=87.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHH---HHHHHHHhc
Q 038801 446 EASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWN---SIIHAFCKA 522 (662)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~ 522 (662)
..++-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+... ..|... |. ++.-+|+-.
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vR-ygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLR-YGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHH-HHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHH-HHHHHHHHHHhcCC
Confidence 33556677777777777666532 222222233334455678888888888887764 223322 33 334466777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCch
Q 038801 523 GRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFF 602 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 602 (662)
|+.....+++..+.+.. ..++.....+.-++...|+.+.+.++++.+. + ...|....-..+.-+....|..
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~-------~-~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLS-------K-SHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG-------G-CSCHHHHHHHHHHHHHHTSSSC
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHH-------h-cCCHHHHHHHHHHHHHhccCCC
Confidence 88877777888888642 2233333334444445566655666655444 2 2345554444444455555553
Q ss_pred -HHHHHHHHHHHh
Q 038801 603 -DAVMQVVEKSQE 614 (662)
Q Consensus 603 -~~A~~~~~~m~~ 614 (662)
.+|+..+..+..
T Consensus 645 ~~~aid~L~~L~~ 657 (963)
T 4ady_A 645 LQSAIDVLDPLTK 657 (963)
T ss_dssp CHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcc
Confidence 578888888753
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.16 E-value=0.00057 Score=66.77 Aligned_cols=232 Identities=14% Similarity=0.137 Sum_probs=127.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchH
Q 038801 292 VFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVG 371 (662)
Q Consensus 292 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~ 371 (662)
.+|..|..+....|++.+|++-| ++.. |+..|..+|.+..+.|.+++-...+...++ . .-+..+=
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA~-------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk---~--~ke~~ID 119 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKAD-------DPSSYMEVVQAANTSGNWEELVKYLQMARK---K--ARESYVE 119 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCCS-------CCCSSSHHHHHTTTSSCCTTHHHHHHTTST---T--CCSTTTT
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhCC-------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---H--hcccccH
Confidence 34556666666666666665433 3332 555566666666666666666665554432 1 1122233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 038801 372 FGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITS 451 (662)
Q Consensus 372 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 451 (662)
+.|+-+|++.++..+.++++ -.||..-...+.+-|...|.++.|.-+|..+ .-|..|...+.+.
T Consensus 120 teLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L 183 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 183 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSC
T ss_pred HHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHH
Confidence 44566666666554433322 1344444455555555555555555444322 2233344445555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRT 531 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (662)
|++..|.+.-+ -..+..||--+-.+|...+.+..|...--.++-... ....++.-|-+.|.+++-+.+
T Consensus 184 ~~yq~AVdaAr------KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhad------eL~elv~~YE~~G~f~ELIsL 251 (624)
T 3lvg_A 184 GEYQAAVDGAR------KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD------ELEELINYYQDRGYFEELITM 251 (624)
T ss_dssp SGGGSSTTTTT------TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS------CCSGGGSSSSTTCCCTTSTTT
T ss_pred HHHHHHHHHHH------hcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHH------HHHHHHHHHHhCCCHHHHHHH
Confidence 55555543321 134557888888888888887666544433332211 223456667888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038801 532 LRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWH 568 (662)
Q Consensus 532 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 568 (662)
++...... ..-...|+-|.-.|++- ++++.++-++
T Consensus 252 lEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 252 LEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 88877421 34556888887777763 4555555444
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.07 E-value=3 Score=47.61 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD----VGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTI 479 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 479 (662)
.-|..++..+.+.|.++.+.++-....+....-+ ...|..+..++...|++++|...+-.+......- ..+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~--~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK--SCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH--HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH--HHHHHH
Confidence 4578888888899999888887776654322212 1257888899999999999999888877654432 356666
Q ss_pred HHHHHhcCCHH
Q 038801 480 MTGLMENHRPE 490 (662)
Q Consensus 480 l~~~~~~~~~~ 490 (662)
+..+|..|..+
T Consensus 978 V~~lce~~~~~ 988 (1139)
T 4fhn_B 978 VNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHCCHH
T ss_pred HHHHHhCCChh
Confidence 66666666543
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.56 E-value=2.1 Score=41.99 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCCCCccc
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMRE-----ARIYDLKGS 475 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 475 (662)
..++..+...|++++|...+..+.... ..+...|..+|.+|.+.|+..+|++.|++..+ .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445666677777777777777776542 22666777777777777777777777776543 477776543
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.99 E-value=14 Score=36.93 Aligned_cols=192 Identities=8% Similarity=0.009 Sum_probs=110.7
Q ss_pred cCCHHHHHHHHHHHHHhC--CCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH----HHc
Q 038801 343 NGNVKGLANLIIEAQKLE--PSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY----CKE 416 (662)
Q Consensus 343 ~~~~~~a~~~~~~m~~~~--~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~ 416 (662)
.|++++|++.+-.+.+-. .............++..|...|+++...+.+..+.+..-.. ......++..+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 478888888887776421 12233344556678889999999998888777665542222 22333444333 223
Q ss_pred CCHHHHHH--HHHHHHhCCCCCC--------hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCC----cccHHHHHH
Q 038801 417 HRTAEATQ--LVMDISSSGLQLD--------VGNYDALIEASITSQDFQSAFSLFRDMREARI-YDL----KGSYLTIMT 481 (662)
Q Consensus 417 g~~~~A~~--~~~~m~~~g~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~ll~ 481 (662)
...+.... +.+.+. .+... ......|...|...|++.+|..++.++...-. ..+ ...+...+.
T Consensus 108 ~~~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332111 111111 11111 11234566778888888888888888764311 111 134555667
Q ss_pred HHHhcCCHHHHHHHHHHHhhC---CCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038801 482 GLMENHRPELMAAFLDEVVED---PRVEVK--THDWNSIIHAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~---~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (662)
.|...+++..|..++.++... ....|+ ...|..++..+...+++.+|.+.|.+..+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 778888888888888776421 122222 34566777777778888888777777664
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.97 E-value=6.7 Score=44.82 Aligned_cols=130 Identities=9% Similarity=0.056 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND----QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
-|..++..+.+.|.++.+.++-+..++..-.-+. ..|..+++++...|++++|...+-.+. +...+ .
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-------d~~~r--~ 971 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-------TTPLK--K 971 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-------HSSSC--H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-------CHHHH--H
Confidence 4777888888888888888888777654211121 257788888888999999988887766 33333 3
Q ss_pred HHHHHHHHHHHccCchH------------HHHHHHHHH-Hh---CCCCCCHHhHHHHHHHHhhhhhh-hHHHHHHHHhhH
Q 038801 587 NLVDAFLYALVKGGFFD------------AVMQVVEKS-QE---MKVFVDKWKYKQAFMENHKKLKV-AKLRKRNFKKME 649 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~------------~A~~~~~~m-~~---~~~~p~~~~~~~~~~~~~~~~~~-a~~~~~~~~~l~ 649 (662)
..+..|+..++..|..+ +..+++..- .. ..-.|+-+..+.++...+||+.. |..+++++.++.
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhh
Confidence 45566666666555543 444444332 11 12235566667777777788765 466668777764
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.87 E-value=1.2 Score=43.80 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHH
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVD 590 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~ 590 (662)
+...++..+...|++++|...++.+.... ..+...|..+|.++...|+..+|++.|++..+.+.+ +.|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~--eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD--DLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--HHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--HhCCCCCHHHHH
Confidence 35567788889999999999999888752 337789999999999999999999999999876654 569999886544
Q ss_pred H
Q 038801 591 A 591 (662)
Q Consensus 591 ~ 591 (662)
.
T Consensus 250 l 250 (388)
T 2ff4_A 250 L 250 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.61 E-value=27 Score=38.18 Aligned_cols=451 Identities=13% Similarity=-0.005 Sum_probs=219.0
Q ss_pred hhhHHHHHHHHHhhCChhHHHHHHHHhhhCC---------CCCC-----hhhHHHHHHHHhccCCchhH-HHHHHHHHHH
Q 038801 68 ITSLETNLHKSLLTNNTDEAWKSFKSLTANS---------LFPS-----KPVTNSLIAHLSSLQDNHNL-KRAFASVVYV 132 (662)
Q Consensus 68 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~---------~~p~-----~~~~~~ll~~~~~~~~~~~~-~~~~~~~~~~ 132 (662)
......++..+.+.+...+|..+.-+..+.. +..+ ..++..++.+....-...++ ...++.+..+
T Consensus 145 ~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~I 224 (963)
T 4ady_A 145 TSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDF 224 (963)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Confidence 4445677778888898888877754433211 0011 23444455555545555554 4666666666
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHH---------HH
Q 038801 133 IEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVF---------EE 203 (662)
Q Consensus 133 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~---------~~ 203 (662)
..+.+. | -|..+++.+.+.++.+.+.++|+.+... .+....+.+-..++ +.+.-.-..++. ++
T Consensus 225 y~k~~~-~---dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFdL~-~~~~Q~fL~~v~~~l~~~e~~~k 296 (963)
T 4ady_A 225 LMNMPN-C---DYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFDLV-SSASQQLLEILVTELTAQGYDPA 296 (963)
T ss_dssp HHHSSS-C---CHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHTTCCHH
T ss_pred HHhCCc-h---hHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHHHh-cccchHHHHHHHHhccccchhHH
Confidence 655432 2 5677888899999999999999998741 12223233222222 222111111111 11
Q ss_pred HHHhhhhhhcCCCCccHHHHHHHHHHHhcc-----------C----CChhHHHHHHHHHHhcCCCCCcc-----------
Q 038801 204 CCRIALDENLDFMKPNIYACNAALEGCCYG-----------L----QSVSDAEKVIETMSVLGVRPNES----------- 257 (662)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~----~~~~~a~~~~~~m~~~g~~p~~~----------- 257 (662)
+..+. .| .+....|+.++...... . .....|..+-+-....|..-|..
T Consensus 297 L~~IL-----sg-~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~ 370 (963)
T 4ady_A 297 LLNIL-----SG-LPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA 370 (963)
T ss_dssp HHHHT-----TS-HHHHHHHHHHHHHHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC
T ss_pred HHHHh-----CC-CChHHHHHHHHHhccccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc
Confidence 11110 00 00111222222211000 0 00112222222222233222220
Q ss_pred ----cHHHHH-HHHHHcCCHHHHHHHHHHHHhcC--CCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCC-CCC--C
Q 038801 258 ----SFGFLA-YLYALKGLQEKIVELESLMNEFG--FSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNM-EQS--D 327 (662)
Q Consensus 258 ----t~~~li-~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~ 327 (662)
-+.++. -+....|+.+++..+++.....+ -.+....-..+.-+...+|..+++..++.+.+..... .|- .
T Consensus 371 ~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~ 450 (963)
T 4ady_A 371 QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDV 450 (963)
T ss_dssp CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHH
T ss_pred chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCcccccccccc
Confidence 111111 12334566677766665544321 1122334444445566667666777777777664210 000 0
Q ss_pred CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCcccccchHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 038801 328 FSKETYCEVVKGFLQNGN-VKGLANLIIEAQKLEPSGIVVDRSVGF--GIISACVNLGLSDKAHSILDEMNACGCSVGLG 404 (662)
Q Consensus 328 p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 404 (662)
+....-.++.-+++-.|. -+++.+.+..+.. ..- ....... +|...++-.|+.+....++..+.+.. +..
T Consensus 451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~---dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~ 523 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANIEVYEALKEVLY---NDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGN 523 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH---TCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh---cCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHH
Confidence 011112222223333333 2345555555443 110 0011111 23333445677777777777766532 333
Q ss_pred hHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCChhhHH---HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 038801 405 VYVPTLKAYC--KEHRTAEATQLVMDISSSGLQLDVGNYD---ALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTI 479 (662)
Q Consensus 405 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 479 (662)
+...+.-+++ -.|+.+.+..+.+.+.... .|. .-|. ++.-+|+..|+.....++++.+.... ..+......+
T Consensus 524 vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAVi 600 (963)
T 4ady_A 524 ITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVI 600 (963)
T ss_dssp HHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHH
Confidence 4444444444 5688888888888887641 222 2232 33446777888877777888887653 2233333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHH
Q 038801 480 MTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRL-EDAKRTLRRMIFLQFEPNDQTY 547 (662)
Q Consensus 480 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~ 547 (662)
.-++...|+.+.+.++++.+.+. ..|.+..-..+.-+....|.. .+|..++..+.. .+|..+-
T Consensus 601 aLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 601 ALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp HHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 44555567766677777666653 245554444444444555554 578888888875 4555443
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.64 E-value=1.2 Score=36.88 Aligned_cols=101 Identities=7% Similarity=0.043 Sum_probs=55.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCC-------
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFL-QFEPND-------QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQK------- 580 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------- 580 (662)
++.+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++..|...|++.....+...+.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 44445556666665555543321 012221 244555566666666666666666654332211100
Q ss_pred ----------CCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCC
Q 038801 581 ----------GIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMK 616 (662)
Q Consensus 581 ----------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 616 (662)
....+...---+..++.+.|++++|+.+++.+....
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 122233444457778899999999999998864433
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.93 E-value=3.6 Score=43.87 Aligned_cols=54 Identities=7% Similarity=0.049 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH-HHHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 551 INGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH-NLVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 551 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
.+.|...|+++-|+++-++.. ...|+. .+|..|..+|.+.|+++.|+-.++.|.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV---------~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTST---------ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH---------HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHH---------hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 445667899999999999998 566764 899999999999999999999999985
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.15 E-value=20 Score=33.75 Aligned_cols=138 Identities=14% Similarity=-0.029 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhhCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHH
Q 038801 70 SLETNLHKSLLTNNTDEAWKSFKSLTANSLFPSKPVTNSLIAHLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLL 149 (662)
Q Consensus 70 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 149 (662)
.|.++...|.+++++++|++++.. -...+.+.|+...+......++....+.+.++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~---------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS---------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 334444455555555555554322 22334455666666666656666777777778877777777
Q ss_pred HHHHhcCCchhH-HHHHHHHH----hcC-CCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHH
Q 038801 150 GSMRNANTAAPA-FALVKCMF----KNR-YFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYAC 223 (662)
Q Consensus 150 ~~~~~~~~~~~a-~~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (662)
..+.....-+.. ..+++.++ +.| ....+......+...|.+.+++.+|+.-|-. +-.++...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-----------g~~~s~~~~ 170 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-----------GTKESPEVL 170 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------SCTTHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-----------cCCchHHHH
Confidence 777655532211 22333333 233 2334455667777888888888887776631 233344555
Q ss_pred HHHHHHHhcc
Q 038801 224 NAALEGCCYG 233 (662)
Q Consensus 224 ~~ll~~~~~~ 233 (662)
..++-.+...
T Consensus 171 a~mL~ew~~~ 180 (336)
T 3lpz_A 171 ARMEYEWYKQ 180 (336)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555545443
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.84 E-value=6.4 Score=41.99 Aligned_cols=126 Identities=7% Similarity=-0.039 Sum_probs=78.3
Q ss_pred HHHHHHHHhccCCC-hhHHHHHHHHHHhcCCCCCcccHH--HHHHHHHHcCC-HHHHHHHHHHHHhc------CCCCc-H
Q 038801 223 CNAALEGCCYGLQS-VSDAEKVIETMSVLGVRPNESSFG--FLAYLYALKGL-QEKIVELESLMNEF------GFSSQ-M 291 (662)
Q Consensus 223 ~~~ll~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~-~~~a~~~~~~~~~~------g~~~~-~ 291 (662)
-..++..+... ++ .+.|+.+|+++.... |....+- .+|..+...++ --+|.+++.+..+. ...+. .
T Consensus 251 ~~~Ll~~~~~t-~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 251 MYSLKSFIAIT-PSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHTC-GGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHccc-ccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34555555554 56 588999999998763 4333322 23333333332 22344544444321 11111 1
Q ss_pred ----------HhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038801 292 ----------VFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEA 356 (662)
Q Consensus 292 ----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 356 (662)
.....-.+.+...|+++-|+++-.+.....+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-----eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-----SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-----CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-----hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222345567789999999997777765432 6789999999999999999999999886
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.25 E-value=2.4 Score=33.52 Aligned_cols=72 Identities=10% Similarity=-0.057 Sum_probs=55.6
Q ss_pred CCcccHHHHHHHHHHHHccCch---HHHHHHHHHHHhCCCC--CCHHhHHHHHHHHhhhhhhhHHHHHHHHhhHHHH
Q 038801 581 GIKFEHNLVDAFLYALVKGGFF---DAVMQVVEKSQEMKVF--VDKWKYKQAFMENHKKLKVAKLRKRNFKKMEALI 652 (662)
Q Consensus 581 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~--p~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~p~~ 652 (662)
+-.|+..+--.+.++++++.+. .+++.++++..+.++. -+.+.++..++...|+++.|++..+.+++++|.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4456666666778888887764 4688899888776642 3456666777788899999999999999999975
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.53 E-value=28 Score=33.84 Aligned_cols=94 Identities=15% Similarity=0.002 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-----HHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHH-
Q 038801 261 FLAYLYALKGLQEKIVELESLMNEFGFSSQ-----MVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYC- 334 (662)
Q Consensus 261 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~- 334 (662)
.+...|...|++.+|.+++..+.+.=-..| ..+|..-+..|...++..++...+........ .+.+++..-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~--ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN--AIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HSCCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc--cCCCCHHHHHH
Confidence 467788888888888888777765311111 34566667778888888888877666544321 1112222221
Q ss_pred -HH--HHHHH-hcCCHHHHHHHHHHH
Q 038801 335 -EV--VKGFL-QNGNVKGLANLIIEA 356 (662)
Q Consensus 335 -~l--i~~~~-~~~~~~~a~~~~~~m 356 (662)
.. ...+. ..+++..|...|-+.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 12344 677888887777654
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.04 E-value=28 Score=32.54 Aligned_cols=166 Identities=7% Similarity=0.001 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCChhhHHH
Q 038801 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHS----ILDEMNACGCSVGLGVYVP 408 (662)
Q Consensus 333 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ 408 (662)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|.+ +.+.+.+.+.+++......
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34455556666777777766644211 2233344433333 3444455566666666666
Q ss_pred HHHHHHHcCCHH-HHHHHHHHH----HhCCC--CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 038801 409 TLKAYCKEHRTA-EATQLVMDI----SSSGL--QLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMT 481 (662)
Q Consensus 409 li~~~~~~g~~~-~A~~~~~~m----~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 481 (662)
++..+.....-+ .=.++.+++ .+.|- .-|......+...|.+.|++.+|...|-- |-..+...+..++.
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 666554432111 112222222 22221 12566777778888888888888776631 11112234444444
Q ss_pred HHHhc---CCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 482 GLMEN---HRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 482 ~~~~~---~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
-+... |...+ .+...-.+ +-.|.-.|+...|..+|+...
T Consensus 174 ~w~~~~~~~~~~e---------------~dlf~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDST---------------VAEFFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHH---------------HHHHHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcch---------------HHHHHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 44333 32222 22222222 233456788888888887665
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.97 E-value=6.7 Score=29.16 Aligned_cols=60 Identities=10% Similarity=0.039 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALI 445 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 445 (662)
-+..+-++.+....+.|++.+..+.++++-+.+++..|.++|+-++.+. .....+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 3444555555555566666666666666666666666666666665542 22233454444
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.35 E-value=17 Score=29.12 Aligned_cols=68 Identities=7% Similarity=0.005 Sum_probs=45.9
Q ss_pred CCCChHHHHHHHHHHHhcCCc---hhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 038801 138 KLLDFQTVHTLLGSMRNANTA---APAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCR 206 (662)
Q Consensus 138 ~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 206 (662)
..++..+-....-++++.... .+++.+++.+.+.+.. ....+.-.|.-++.|.|+++.|++..+.+.+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 356666766677777766644 4677888888875432 2333334455566689999999999988887
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.69 E-value=18 Score=28.64 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 541 EPNDQTYLSLINGYVTAE---QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 541 ~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.|+..+--.+..++.+.. +..+++.+++++. +.+-.-....+-.|.-++.+.|++++|.++.+.+.+..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~-------~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY-------KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH-------HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 566655555566666654 4556899998888 333111245666677789999999999999999977655
Q ss_pred C
Q 038801 618 F 618 (662)
Q Consensus 618 ~ 618 (662)
.
T Consensus 110 ~ 110 (134)
T 3o48_A 110 N 110 (134)
T ss_dssp T
T ss_pred C
Confidence 4
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.31 E-value=36 Score=32.00 Aligned_cols=81 Identities=6% Similarity=-0.009 Sum_probs=45.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHH
Q 038801 437 DVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSII 516 (662)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 516 (662)
|......+...|.+.+++.+|...|- .|-.+....|..++..+...+. ...++...-.+++
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~---------------~~e~dlfiaRaVL 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDE---------------SHTAPLYCARAVL 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSC---------------GGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcC---------------CccHHHHHHHHHH
Confidence 55666777788888888888877762 1222222455444444433332 1223333333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 038801 517 HAFCKAGRLEDAKRTLRRMIF 537 (662)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~ 537 (662)
.|...++...|..+++...+
T Consensus 196 -~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHHH
Confidence 45567888888887766554
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.93 E-value=20 Score=28.75 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhCCC
Q 038801 541 EPNDQTYLSLINGYVTAE---QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEMKV 617 (662)
Q Consensus 541 ~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 617 (662)
.|+..+--.+..++.+.. +..+++.++++.. ..+-.-.....-.|.-++.|.|++++|.++.+.+.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~-------~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY-------KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH-------HHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 466655555566666654 4456888888888 322111234555666788899999999999999987765
Q ss_pred C
Q 038801 618 F 618 (662)
Q Consensus 618 ~ 618 (662)
.
T Consensus 109 ~ 109 (144)
T 1y8m_A 109 N 109 (144)
T ss_dssp C
T ss_pred C
Confidence 4
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.86 E-value=36 Score=31.72 Aligned_cols=91 Identities=8% Similarity=-0.069 Sum_probs=57.2
Q ss_pred HHhccCCchhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCch-hHHHHHHHHH----hcCC-CCCcccHHHHHH
Q 038801 112 HLSSLQDNHNLKRAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAA-PAFALVKCMF----KNRY-FMPFELWGGFLV 185 (662)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~l~ 185 (662)
.+.+.|+...+......++....+.+..++......++..+..-..-+ .=..+++.++ +.|. ...+...+..+.
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 445556666666666666777778888888887777777776533222 1223333333 3332 334556677788
Q ss_pred HHhhcCCcHHHHHHHHH
Q 038801 186 DICRKNSNFVAFLKVFE 202 (662)
Q Consensus 186 ~~~~~~~~~~~a~~~~~ 202 (662)
..|.+.+++.+|+.-|-
T Consensus 142 ~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHH
Confidence 88888888888877664
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.72 E-value=26 Score=31.88 Aligned_cols=207 Identities=14% Similarity=0.096 Sum_probs=92.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh--HHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS---VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGV--YVPTL 410 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li 410 (662)
.+...++.|+.+.+..+++. |..++.. .-.+.+...+..|+.+ +++.+.+.|..++... -...+
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~-------g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L 76 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEG-------GANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPF 76 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-------TCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHc-------CCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHH
Confidence 44455667777665555542 3333221 1123455555667754 4444555665443211 11233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcc------------c
Q 038801 411 KAYCKEHRTAEATQLVMDISSSGLQLDV---GNYDALIEASITSQDFQSAFSLFRDMREARIYDLKG------------S 475 (662)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------------~ 475 (662)
...+..|+.+ +++.+.+.|..++. ..++.+ ...+..|+.+- ++.+.+.|..++.. .
T Consensus 77 ~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 77 LLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred HHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccC
Confidence 4445566654 44444555655542 222333 33445566543 44444455433321 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHH
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK---THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ--TYLSL 550 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l 550 (662)
-...+...+..|+.+.+..+++.. +..++ ..-.+.+.. .+..|+.....++++.+.+.|..++.. .-.+.
T Consensus 148 g~t~L~~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~ 222 (285)
T 1wdy_A 148 GATALMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 112333444556655554444431 22221 112223332 334555555566666666666655432 11122
Q ss_pred HHHHHhcCCHHHHHHHH
Q 038801 551 INGYVTAEQYFSVLMMW 567 (662)
Q Consensus 551 i~~~~~~~~~~~a~~~~ 567 (662)
+...+..|+.+-+..++
T Consensus 223 L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33334456655444333
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.12 E-value=23 Score=35.04 Aligned_cols=99 Identities=12% Similarity=0.145 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHH-
Q 038801 511 DWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN--DQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHN- 587 (662)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~- 587 (662)
+...+..-|.+.|++++|.+.|.++......+. ...+-.+++.+...+++..+...++++...... +-.|+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~----~~d~~~~~ 208 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK----GGDWERRN 208 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT----CCCTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc----CCCHHHHH
Confidence 566777788888888888888888876433333 246677777777888888888888887654432 2223321
Q ss_pred -HHHHHHHHHHccCchHHHHHHHHHHH
Q 038801 588 -LVDAFLYALVKGGFFDAVMQVVEKSQ 613 (662)
Q Consensus 588 -~~~~l~~~~~~~g~~~~A~~~~~~m~ 613 (662)
....-+..+...+++.+|.+.|-++.
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence 11222233456788888877776654
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.58 E-value=7.7 Score=35.08 Aligned_cols=52 Identities=13% Similarity=0.009 Sum_probs=30.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 519 FCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
..+.|++++|++....-++.. .-|...-..|+.-+|-.|+++.|.+-++-..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345566666666666555542 2244555566666666666666666666555
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.07 E-value=13 Score=29.31 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038801 386 KAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALI 445 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 445 (662)
+..+-++.+...++.|+..+..+.++++-+.+++..|.++|+-++.+- .+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344445555555666666666666666666666666666666665542 22333455444
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.46 E-value=15 Score=30.33 Aligned_cols=25 Identities=8% Similarity=-0.002 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 038801 294 YSSLISGYVKLGNLESASRTILLCL 318 (662)
Q Consensus 294 ~~~li~~~~~~g~~~~A~~~~~~~~ 318 (662)
+..+.+++...|++..|...|.+.+
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444455555555555555555543
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=73.75 E-value=25 Score=26.15 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhC-CCCCCHHhHHH
Q 038801 559 QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEM-KVFVDKWKYKQ 626 (662)
Q Consensus 559 ~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ 626 (662)
|.-+..+-++.+. ..++.|++.+..+.+++|-|-.++..|+++++-++.+ |..-.+|.+.+
T Consensus 25 D~~e~rrglN~l~-------~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLV-------GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHT-------TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHh-------ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 5667777778888 7899999999999999999999999999999988543 33334566553
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=71.69 E-value=76 Score=30.77 Aligned_cols=169 Identities=14% Similarity=0.092 Sum_probs=92.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCChhhHHHH-
Q 038801 373 GIISACVNLGLSDKAHSILDEMNAC--GCS---VGLGVYVPTLKAYCKEHRTAEATQLVMDISSSG--LQLDVGNYDAL- 444 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l- 444 (662)
-++..|...|++.+|.+++..+.+. ... --..+|-.-+..|...+++.++...+....... +.++......+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3677888888888888888777663 111 113456666778888899999988887765431 11222222111
Q ss_pred ---HHHHH-cCCCHHHHHHHHHHHHHcCCC---C---CcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHH
Q 038801 445 ---IEASI-TSQDFQSAFSLFRDMREARIY---D---LKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNS 514 (662)
Q Consensus 445 ---i~~~~-~~g~~~~A~~~~~~m~~~~~~---~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 514 (662)
...+. ..+++..|...|-+..+.--. | +...| .++.+.....+.+--.-+..+..... ..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkY-lvL~aLl~~~r~el~~~l~~~~~~~~-~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKY-MLLCKIMLGQSDDVNQLVSGKLAITY-SGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-HHHHHHHTTCGGGHHHHHHSHHHHTT-CSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHH-HHHHHHHcCCHHHHHHHhcccccccc-CCccHHHHHH
Confidence 22345 788999998887776432101 1 11122 22233333332222221222222222 3466666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038801 515 IIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ 545 (662)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 545 (662)
++.+| ..+++.+...+++.... .+..|..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 77765 45788777777776543 2455654
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.97 E-value=23 Score=26.18 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=50.0
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccC
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGL 234 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 234 (662)
..+.++|..+-+.+...+. ...+..+-+......|++++|..+.+.. ..||...|-++-.. +.
T Consensus 20 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----------c~pdlepw~ALce~--rl- 82 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKL-----------AYPDLEPWLALCEY--RL- 82 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----------CCGGGHHHHHHHHH--HH-
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC-----------CCchHHHHHHHHHH--hc-
Confidence 3455666666666665442 2222222233333678888888777764 57788777666543 22
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSF 259 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~ 259 (662)
|-.+++..-+.++...| .|....|
T Consensus 83 Gl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 83 GLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp TCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred ccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 66666666666666555 3443333
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.48 E-value=40 Score=26.66 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHHHhC-CCCCCHHhHH
Q 038801 559 QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKSQEM-KVFVDKWKYK 625 (662)
Q Consensus 559 ~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~ 625 (662)
|.-+..+-++.+. ..++.|++.+..+.+++|-+-.++..|+++++-++.+ |..-++|.++
T Consensus 68 D~wElrrglN~l~-------~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 68 DAWELRKGMNTLV-------GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp CHHHHHHHHHHHT-------TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred cHHHHHHHHHHHh-------ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 3444555556666 6677777777777777777777777777777776432 2333345444
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.32 E-value=12 Score=33.84 Aligned_cols=119 Identities=8% Similarity=0.014 Sum_probs=75.3
Q ss_pred HHHHHhcCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHH
Q 038801 149 LGSMRNANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALE 228 (662)
Q Consensus 149 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 228 (662)
+..+.+.|++++|++.+..-++. .|.+......|+.+++-.|+++.|.+-++...++.++ ..|-...|..+|.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~-----~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-----YLPGASQLRHLVK 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-----hhHHHHHHHHHHH
Confidence 34567889999999888887775 4788888889999999999999999999998774221 2233345555554
Q ss_pred HHhccCCChhHHHHHHHHHHhcCCCCCc-----ccHHHHHHHHH--HcCCHHHHHHHHHHHHhc
Q 038801 229 GCCYGLQSVSDAEKVIETMSVLGVRPNE-----SSFGFLAYLYA--LKGLQEKIVELESLMNEF 285 (662)
Q Consensus 229 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~t~~~li~~~~--~~g~~~~a~~~~~~~~~~ 285 (662)
+-... .+...-+-.|.. .-...++.+.. ..|+.++|..+-+.+.+.
T Consensus 77 aE~~R-----------~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 AAQAR-----------KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHH-----------HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHH-----------HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 32221 122222222221 12334444443 458888888777776554
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.52 E-value=32 Score=34.03 Aligned_cols=61 Identities=7% Similarity=0.015 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038801 405 VYVPTLKAYCKEHRTAEATQLVMDISSSGLQL--DVGNYDALIEASITSQDFQSAFSLFRDMR 465 (662)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (662)
+...+...|.+.|++++|.+.|.++......+ -...+-.+|+.+...+++..+...+++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45556666666666666666666665542222 23344555555555566666655555543
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.40 E-value=29 Score=31.50 Aligned_cols=237 Identities=12% Similarity=0.058 Sum_probs=111.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHH
Q 038801 373 GIISACVNLGLSDKAHSILDEMNACGCSVGLG---VYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV---GNYDALIE 446 (662)
Q Consensus 373 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~ 446 (662)
+.+...++.|+.+....+ .+.|..++.. .-...+...+..|+.+ +++.+.+.|..++. ...+. +.
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATP-FL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCH-HH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCH-HH
Confidence 455566777887655444 4555444322 1123455666778765 44455556665543 22233 33
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchh------------h
Q 038801 447 ASITSQDFQSAFSLFRDMREARIYDLK---GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTH------------D 511 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------------~ 511 (662)
..+..|+.+ +++.+.+.|..++. ...+ .+...+..|+.+.+..+++. +..++.. .
T Consensus 78 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~-----g~~~~~~~~~~~~~~~~~~~ 147 (285)
T 1wdy_A 78 LAAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKR-----GANVNLRRKTKEDQERLRKG 147 (285)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHT-----TCCTTCCCCCCHHHHHTTCC
T ss_pred HHHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHh-----CCCcccccccHHHHHhhccC
Confidence 344556654 44445555544332 1222 33444566776655555443 2222211 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHH-
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPND---QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHN- 587 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~- 587 (662)
-...+...+..|+.+-+..+++.. |..++. .-.+.|..+. ..++.....++.+.+. +.|..++..
T Consensus 148 g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i~~~Ll-------~~g~~~~~~~ 216 (285)
T 1wdy_A 148 GATALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHAL-LSSDDSDVEAITHLLL-------DHGADVNVRG 216 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHHH-HCSCTTTHHHHHHHHH-------HTTCCSSCCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHHH-HccccchHHHHHHHHH-------HcCCCCCCcC
Confidence 112334445667765555444321 434332 2233333333 3455444455666666 455544331
Q ss_pred -HHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHhhhhhhhHHHHH
Q 038801 588 -LVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD-----KWKYKQAFMENHKKLKVAKLRKR 643 (662)
Q Consensus 588 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~~~~~~~~~~~~a~~~~~ 643 (662)
.-.+.+...++.|+.+-+..+++. .|..++ ..+. +..+...|+.+..+.+.+
T Consensus 217 ~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 217 ERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVELKLKKIAELLCK 274 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHHHcCcHHHHHHHHH
Confidence 112223334566777655555442 344432 2222 444555566665555444
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.72 E-value=22 Score=26.23 Aligned_cols=87 Identities=10% Similarity=0.007 Sum_probs=51.5
Q ss_pred cCCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccC
Q 038801 155 ANTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGL 234 (662)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 234 (662)
..+.++|..+-+.+...+. ...+..+-+......|++++|..+.+.. ..||...|-++-.. + .
T Consensus 19 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----------c~pdlepw~ALce~--r-l 81 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGN-----------PWPALEPWFALCEW--H-L 81 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----------CCGGGHHHHHHHHH--H-T
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC-----------CCchHHHHHHHHHH--h-c
Confidence 3456666666666666442 2222222233334678888888777654 57888887766543 3 2
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSF 259 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~ 259 (662)
|-.+++..-+.++...| .|....|
T Consensus 82 Gl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 82 GLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp TCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred ccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 77777777776776665 4444444
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.58 E-value=31 Score=25.57 Aligned_cols=78 Identities=17% Similarity=0.068 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 038801 383 LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFR 462 (662)
Q Consensus 383 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (662)
.-++|..|-+-+...+. ...+--+-+..+...|++++|..+.+.+. .||...|.+|-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666666553 33333333445667788888777765543 677777766544 35566666666666
Q ss_pred HHHHcC
Q 038801 463 DMREAR 468 (662)
Q Consensus 463 ~m~~~~ 468 (662)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 666555
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.46 E-value=47 Score=27.44 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 038801 159 APAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCR 206 (662)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 206 (662)
+.+..+|..|...++......+|..-...+...|++.+|.++|+.-.+
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568899999999999888888999999999999999999999998766
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=60.36 E-value=29 Score=25.64 Aligned_cols=78 Identities=12% Similarity=0.008 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 038801 383 LSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFR 462 (662)
Q Consensus 383 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (662)
.-++|..|-+-+...+. ...+--+-+..+...|++++|..+.+.+. .||...|.+|-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666666553 33333333455677788888877665543 677777765543 46677777777776
Q ss_pred HHHHcC
Q 038801 463 DMREAR 468 (662)
Q Consensus 463 ~m~~~~ 468 (662)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 676665
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=59.58 E-value=55 Score=28.06 Aligned_cols=58 Identities=7% Similarity=0.060 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH
Q 038801 522 AGRLEDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH 586 (662)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~ 586 (662)
.+...++.++|..|..+|+.-.. ..|......+...|++.+|.++|+.-+ +.+-+|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI-------~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA-------ENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HcCCccHH
Confidence 34477899999999998877655 477777788888899999999999888 67777754
No 276
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=59.25 E-value=25 Score=30.24 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCcccH-H-----HHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhh
Q 038801 560 YFSVLMMWHEIKRKISTDGQKGIKFEH-N-----LVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHK 633 (662)
Q Consensus 560 ~~~a~~~~~~m~~~~~~~~~~~~~p~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~ 633 (662)
.+.|+.+|+.+.+ ...+..+. . +-...+..|.+.|.+++|.+++++.......+......|......+
T Consensus 88 LESAl~v~~~I~~------e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 88 LESAINVLEMIKT------EFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHHHHHHHHH------HTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH------hhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 4668888887773 11111111 1 2234456799999999999999999776555555555555555555
Q ss_pred h
Q 038801 634 K 634 (662)
Q Consensus 634 ~ 634 (662)
|
T Consensus 162 d 162 (235)
T 3bu8_A 162 N 162 (235)
T ss_dssp C
T ss_pred C
Confidence 4
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.93 E-value=74 Score=27.25 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=45.9
Q ss_pred CCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 038801 156 NTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCR 206 (662)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 206 (662)
+...++..+|..|...++......+|..-...+...|++.+|.++|+.-.+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 336699999999999999888899999999999999999999999998765
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.72 E-value=1.3e+02 Score=28.71 Aligned_cols=65 Identities=8% Similarity=0.030 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR--LEDAKRTLRRMIFLQFEP 542 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p 542 (662)
...++.-|...++.++|.+.++++..- ... ...+..++..++-+.++ .+...+++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p-~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT-TCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC-cch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 577888889999999999999988642 222 23345555555554333 355777888777766443
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=53.68 E-value=1.5e+02 Score=28.14 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCc--hHHHHHHHHHHHhCCCC
Q 038801 546 TYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGF--FDAVMQVVEKSQEMKVF 618 (662)
Q Consensus 546 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~ 618 (662)
..+.++.-|...|+.++|...++++. ...+.+ ..+...+..++-+.++ .+...+++..+...|+-
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~-------~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELE-------VPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC-------CTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHcc-------CCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 45666777777777777777777766 222221 2334455555555432 34566666666665554
No 280
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=53.00 E-value=1.5e+02 Score=27.67 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 523 GRLEDAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 523 g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
.+..+..++-.-+...++.|.. -+...-|..+.+.+++..|..+-+++.
T Consensus 184 ~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLL 234 (325)
T 3mv2_A 184 GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFL 234 (325)
T ss_dssp TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456667777777776677765 367777888889999999999999999
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=50.70 E-value=83 Score=27.88 Aligned_cols=88 Identities=16% Similarity=0.042 Sum_probs=51.2
Q ss_pred HHHHhccCCChhHHHHHHHHHHhc--CCCC----CcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH
Q 038801 227 LEGCCYGLQSVSDAEKVIETMSVL--GVRP----NESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISG 300 (662)
Q Consensus 227 l~~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 300 (662)
++.+... .++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+++.. ..+.......+..
T Consensus 25 LDv~IA~-r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELAR-LRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 4556666 9999999999887542 2332 112223334433333333444455555533 3455556667778
Q ss_pred HHhcCChhhHHHHHHHHH
Q 038801 301 YVKLGNLESASRTILLCL 318 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~ 318 (662)
+.+.|+.++|.++|.+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 888888888888875543
No 282
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.72 E-value=2.4e+02 Score=29.27 Aligned_cols=205 Identities=3% Similarity=-0.069 Sum_probs=112.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHH----HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038801 337 VKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIIS----ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKA 412 (662)
Q Consensus 337 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 412 (662)
+.-+.+. +.+.|...+.....- ..+ +......+-. .....+...++...+....... .+.....-.+..
T Consensus 222 ~~rlar~-d~~~A~~~~~~~~~~--~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~ 294 (618)
T 1qsa_A 222 FASVARQ-DAENARLMIPSLAQA--QQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRM 294 (618)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHH--TTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHhhhhc--cCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHH
Confidence 3344444 789999999887541 222 2222222222 2233343556666666655543 343344455555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCHHHH
Q 038801 413 YCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHRPELM 492 (662)
Q Consensus 413 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 492 (662)
..+.|+++.|...|..|..... ......--+..++...|+.++|..+|..+.+. .+|-.++.+ .+.|..-..
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~~ 366 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYEL 366 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCCC
T ss_pred HHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH-HHcCCCCCC
Confidence 6678999999999999876321 12333445666788899999999999998753 144443322 222221000
Q ss_pred HHHHHHHhhCCCCccc-h-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038801 493 AAFLDEVVEDPRVEVK-T-----HDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMM 566 (662)
Q Consensus 493 ~~~~~~~~~~~~~~p~-~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 566 (662)
......+. . ..--..+..+...|....|...+..+... .+......+.......|.++.++..
T Consensus 367 --------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~ 435 (618)
T 1qsa_A 367 --------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQA 435 (618)
T ss_dssp --------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHH
Confidence 00000000 0 01122345567789999998888887753 2333333444444556667666544
Q ss_pred H
Q 038801 567 W 567 (662)
Q Consensus 567 ~ 567 (662)
.
T Consensus 436 ~ 436 (618)
T 1qsa_A 436 T 436 (618)
T ss_dssp H
T ss_pred H
Confidence 3
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.15 E-value=75 Score=24.96 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCChhh
Q 038801 333 YCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL--SDKAHSILDEMNACGCSVGLGV 405 (662)
Q Consensus 333 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~ 405 (662)
...++.-|...|+.++|.+.++++.. ..+. ...+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~---p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV---PHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC---GGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC---CccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 45677778888888888888888642 1111 12222333444444332 3556677777776665444333
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.98 E-value=71 Score=27.77 Aligned_cols=49 Identities=12% Similarity=-0.038 Sum_probs=22.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 038801 516 IHAFCKAGRLEDAKRTLRRMIFLQFEPNDQT--YLSLINGYVTAEQYFSVLMMWH 568 (662)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~a~~~~~ 568 (662)
+...+..|+.+-+.-++ +.|..++... -.+.+....+.|+.+-+.-+++
T Consensus 181 L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 34445667765444443 3344444211 0122333445566555544444
No 285
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=47.63 E-value=1.6e+02 Score=27.29 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 038801 371 GFGIISACVNLGLSDKAHSILDEM 394 (662)
Q Consensus 371 ~~~ll~~~~~~~~~~~a~~~~~~m 394 (662)
...++.-|...|+.++|..-++++
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 345677777777777777777665
No 286
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.01 E-value=1.1e+02 Score=24.73 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcccCCCCCccc-HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCC
Q 038801 563 VLMMWHEIKRKISTDGQKGIKFE-HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFV 619 (662)
Q Consensus 563 a~~~~~~m~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 619 (662)
+.++|..|. .+||--. ...|......+...|++++|.++++.-.+.+-.|
T Consensus 84 p~~if~~L~-------~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLY-------NHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHH-------TTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHH-------HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 666777777 5665443 3556666666777777777777777776666655
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=45.85 E-value=1.5e+02 Score=25.70 Aligned_cols=81 Identities=7% Similarity=-0.059 Sum_probs=41.1
Q ss_pred HHHhccCCChhHHHHHHHHHHhcCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHh--HHHHHHHHHh
Q 038801 228 EGCCYGLQSVSDAEKVIETMSVLGVRPNESS--FGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVF--YSSLISGYVK 303 (662)
Q Consensus 228 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 303 (662)
...+.. |+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -...+...+.
T Consensus 14 ~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 14 HIAVVQ-GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHH
Confidence 334454 888877777777766665555432 12345555666766533 33444554433211 1122333345
Q ss_pred cCChhhHHHH
Q 038801 304 LGNLESASRT 313 (662)
Q Consensus 304 ~g~~~~A~~~ 313 (662)
.|+.+-+..+
T Consensus 89 ~~~~~~~~~L 98 (241)
T 1k1a_A 89 HRSPTCLRAL 98 (241)
T ss_dssp TTCHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 5555544443
No 288
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.61 E-value=1.1e+02 Score=27.72 Aligned_cols=40 Identities=15% Similarity=-0.066 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVEL 278 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 278 (662)
|+.+.+..++ +.|..++...-.+.+...+..|+.+-+..+
T Consensus 42 g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 42 NNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp TCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHH
T ss_pred CCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 6655444333 344444433223344555566665544333
No 289
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=44.78 E-value=2e+02 Score=26.78 Aligned_cols=141 Identities=16% Similarity=0.085 Sum_probs=66.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh
Q 038801 482 GLMENHRPELMAAFLDEVVEDPRVEVK---THDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ--TYLSLINGYVT 556 (662)
Q Consensus 482 ~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~ 556 (662)
..+..|+.+-+..++++. |..++ ..-.+.+..+... +.......+.+.+.+.|..++.. .-.+.+...+.
T Consensus 174 ~A~~~g~~~~v~~LL~~~----gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~ 248 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 248 (337)
T ss_dssp HHHHHTCHHHHHHHHHHS----CCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcc----CCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 345667776666665542 22222 1112233333222 22233344555566777666542 11122334455
Q ss_pred cCCHHHHHHHHHHHHHhhcccCCCCCccc---HHHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhh
Q 038801 557 AEQYFSVLMMWHEIKRKISTDGQKGIKFE---HNLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHK 633 (662)
Q Consensus 557 ~~~~~~a~~~~~~m~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~ 633 (662)
.|+.+.+..+++. .|..++ ..-.+.|..| ++.|+.+ +++.+.+.|..++..+.+ ......|
T Consensus 249 ~~~~~~v~~Ll~~----------~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~~L-~~A~~~~ 312 (337)
T 4g8k_A 249 KKHLGLVQRLLEQ----------EHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGDLV-MTARRNY 312 (337)
T ss_dssp TTCHHHHHHHHTS----------TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCCHH-HHHHHTT
T ss_pred hhhhHHHHHHHHh----------cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCCHH-HHHHHcC
Confidence 6776655544431 222222 1112233333 3566654 445556678887765543 3444556
Q ss_pred hhhhhHHHHH
Q 038801 634 KLKVAKLRKR 643 (662)
Q Consensus 634 ~~~~a~~~~~ 643 (662)
+.+..+.+++
T Consensus 313 ~~~iv~~Ll~ 322 (337)
T 4g8k_A 313 DHSLVKVLLS 322 (337)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6665554443
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.70 E-value=1.1e+02 Score=28.50 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR--LEDAKRTLRRMIFLQFE 541 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~ 541 (662)
...++.-|...|+.++|.+.++++... ... ...++.++..++-+.++ .+...+++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCG-GGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC-cch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 456778888889999999999888531 111 12334444445444332 35566777777765544
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.36 E-value=1.4e+02 Score=26.34 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=17.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 038801 336 VVKGFLQNGNVKGLANLIIEAQK 358 (662)
Q Consensus 336 li~~~~~~~~~~~a~~~~~~m~~ 358 (662)
-++.+....++++|.+++++.++
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46677778888888888877654
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.21 E-value=1.3e+02 Score=26.16 Aligned_cols=49 Identities=8% Similarity=0.023 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 038801 158 AAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCR 206 (662)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 206 (662)
.+.+..+|..|...++......+|......+...|++.+|.++|+.-.+
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4688899999999999888999999999999999999999999998765
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.58 E-value=1.4e+02 Score=24.21 Aligned_cols=49 Identities=2% Similarity=-0.110 Sum_probs=44.5
Q ss_pred chhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHHHH
Q 038801 158 AAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEECCR 206 (662)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 206 (662)
.+++..+|..|...++-.....++..-...+...|++.+|.++|+.-.+
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4569999999999999888889999999999999999999999998765
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.69 E-value=63 Score=26.28 Aligned_cols=70 Identities=11% Similarity=0.052 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCChhh
Q 038801 332 TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGL--SDKAHSILDEMNACGCSVGLGV 405 (662)
Q Consensus 332 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~ 405 (662)
..+.++.-|...|+.++|.+.++++.. ..+. ...+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~---p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV---PHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC---GGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC---Ccch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 345677788888888888888888642 1111 12222233444444322 3456667777766665444333
No 295
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.85 E-value=1.6e+02 Score=27.74 Aligned_cols=218 Identities=14% Similarity=0.083 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccch--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH
Q 038801 329 SKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSV--GFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVY 406 (662)
Q Consensus 329 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 406 (662)
|...++.|. ..+..|+.+-+..+++ .|..++... -.+.+...+..|+.+-+. .+++.|..++...-
T Consensus 17 d~~g~t~L~-~Aa~~g~~~~v~~Ll~-------~g~~~~~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g 84 (364)
T 3ljn_A 17 DDENMEKIH-VAARKGQTDEVRRLIE-------TGVSPTIQNRFGCTALHLACKFGCVDTAK----YLASVGEVHSLWHG 84 (364)
T ss_dssp CHHHHHHHH-HHHHHTCHHHHHHHHH-------TTCCTTCCCTTCCCHHHHHHHHCCHHHHH----HHHHHCCCCCCBTT
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHHH-------cCCCccccCCCCCcHHHHHHHcCCHHHHH----HHHHCCCCccccCC
Confidence 444444443 3445677666555554 233333221 123444555667765444 34444443433222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh--------------------hhHHHHHHHHHcCC--CHHHHHHHHHHH
Q 038801 407 VPTLKAYCKEHRTAEATQLVMDISSSGLQLDV--------------------GNYDALIEASITSQ--DFQSAFSLFRDM 464 (662)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--------------------~~~~~li~~~~~~g--~~~~A~~~~~~m 464 (662)
...+...+..|+.+-+..+++.....|..++. .-.+.|.. .+..| +.+-+..+
T Consensus 85 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~~v~~L---- 159 (364)
T 3ljn_A 85 QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLEMIKIL---- 159 (364)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHHHHHHH----
T ss_pred CCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHHHHHHH----
Confidence 33455566778888777777765554444333 12333433 34455 44443333
Q ss_pred HHcCCCCCccc--HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038801 465 REARIYDLKGS--YLTIMTGLMENHRPELMAAFLDEVVEDPRVEV---KTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQ 539 (662)
Q Consensus 465 ~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 539 (662)
.+.|..++... -.+.+...+..|+.+.+..+++.-....+..+ +..-++.| ...+..|+.+ +.+.+++.|
T Consensus 160 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~g 234 (364)
T 3ljn_A 160 VQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWED----VAMRFVEMG 234 (364)
T ss_dssp HHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHH----HHHHHHTTT
T ss_pred HHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHH----HHHHHHHcC
Confidence 33444333211 12234444566777777666665332111111 11112223 2345667754 444455566
Q ss_pred CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHH
Q 038801 540 FEPNDQ---TYLSLINGYVTAEQYFSVLMMWHE 569 (662)
Q Consensus 540 ~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~ 569 (662)
..++.. -.+.|. ..+..|+.+-+.-+++.
T Consensus 235 ad~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 235 IDVNMEDNEHTVPLY-LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CCTTCCCTTSCCHHH-HHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHH-HHHHhChHHHHHHHHHc
Confidence 665432 223333 33455777766666654
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.68 E-value=1.6e+02 Score=24.27 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHH
Q 038801 526 EDAKRTLRRMIFLQFEPND-QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHN 587 (662)
Q Consensus 526 ~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~ 587 (662)
+.+.++|..|..+|+.-.. ..|......+-..|++.+|.++|+.-+ ..+-+|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi-------~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI-------QQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HcCCCcHHH
Confidence 3478899999998887665 467777777888899999999999998 677777654
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.21 E-value=56 Score=28.48 Aligned_cols=18 Identities=6% Similarity=0.069 Sum_probs=9.5
Q ss_pred HHHHHHhhhhhhhHHHHH
Q 038801 626 QAFMENHKKLKVAKLRKR 643 (662)
Q Consensus 626 ~~~~~~~~~~~~a~~~~~ 643 (662)
+..+...|+.+..+.+.+
T Consensus 214 l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHH
Confidence 445555566555555443
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.40 E-value=81 Score=28.06 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=9.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcC
Q 038801 266 YALKGLQEKIVELESLMNEFG 286 (662)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~g 286 (662)
.++.|+.+....+++.+.+.|
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 334455554444444444444
No 299
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.22 E-value=73 Score=27.80 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=12.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 038801 374 IISACVNLGLSDKAHSILDEMNACGCSVG 402 (662)
Q Consensus 374 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 402 (662)
.+...+..|+.+ +++.+.+.|..++
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~ 38 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANID 38 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcC
Confidence 344445556654 3344445554433
No 300
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.80 E-value=2e+02 Score=24.55 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=34.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCC
Q 038801 235 QSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGL-----QEKIVELESLMNEFGFS 288 (662)
Q Consensus 235 ~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-----~~~a~~~~~~~~~~g~~ 288 (662)
.+++.|+-.+-+|.+.| .|....=..++-+.-..|. +..|...++.....|.+
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 89999999999999998 6655444444444444443 23455556666666653
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.55 E-value=2.4e+02 Score=31.27 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCC
Q 038801 404 GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDV----GNYDALIEASITSQ 452 (662)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g 452 (662)
.-|..++..+-+.+-++.+.++-+...+.--.-|. ..|+.+..+.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 47888999999999999998888877754212122 35677777766544
No 302
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.59 E-value=2e+02 Score=24.31 Aligned_cols=154 Identities=12% Similarity=-0.013 Sum_probs=79.2
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHH
Q 038801 254 PNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETY 333 (662)
Q Consensus 254 p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 333 (662)
++...-...+..+.+.|..+....+. .+.. .+|..+-...+.++.+.|+.+. ...+.+.+.+ ++..+-
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~~-------~~~~vr 98 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALKD-------EDGWVR 98 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTTC-------SSHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHcC-------CCHHHH
Confidence 45555555566666666643333333 3333 2466666666677777765433 3334555544 266666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038801 334 CEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAY 413 (662)
Q Consensus 334 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (662)
...+.++.+.++.+ +...+.++.. .++..+-...+.++...|+.+ +...+..+.+ .++..+-...+.++
T Consensus 99 ~~a~~aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 99 QSAAVALGQIGDER-AVEPLIKALK------DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADAL 167 (211)
T ss_dssp HHHHHHHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHH-HHHHHHHHHh------CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 66677777776643 3333333321 234444445566666666543 3333333332 34555666666666
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 038801 414 CKEHRTAEATQLVMDISS 431 (662)
Q Consensus 414 ~~~g~~~~A~~~~~~m~~ 431 (662)
.+.+. .++...+..+.+
T Consensus 168 ~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHCS-HHHHHHHHHHHH
T ss_pred HHhCc-hhHHHHHHHHHh
Confidence 66665 334444444443
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.90 E-value=1.3e+02 Score=26.05 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=47.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCccc--HHHHHHHH
Q 038801 409 TLKAYCKEHRTAEATQLVMDISSSGLQLDVG---NYDALIEASITSQDFQSAFSLFRDMREARIYDLKGS--YLTIMTGL 483 (662)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~ll~~~ 483 (662)
.+...++.|+.+.+..+++.+.+.|..++.. -++ .+...+..|+.+ +++.+.+.|..++... -...+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence 4556677788888888888777776665432 223 344445566654 3444445554433211 12233444
Q ss_pred HhcCCHHHHHHHHHHH
Q 038801 484 MENHRPELMAAFLDEV 499 (662)
Q Consensus 484 ~~~~~~~~a~~~~~~~ 499 (662)
+..|+.+.+..+++..
T Consensus 87 ~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHcC
Confidence 5566666555555543
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.81 E-value=2.1e+02 Score=24.35 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
.+.+.|+-++-+|.+.| .|....-..++.+.-..|
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 45555555555555555 444444444444444333
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.28 E-value=1.7e+02 Score=22.91 Aligned_cols=63 Identities=8% Similarity=-0.004 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 038801 476 YLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR--LEDAKRTLRRMIFLQF 540 (662)
Q Consensus 476 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 540 (662)
...++.-|...|+.++|.+.++++.. +......+..++..++-+.++ .+.+..++..+.+.|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~--p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC--CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34455666666666666666666532 111112233344444443322 3456666666665553
No 306
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.96 E-value=1.9e+02 Score=24.93 Aligned_cols=72 Identities=14% Similarity=-0.022 Sum_probs=32.8
Q ss_pred HhccCCChhHHHHHHHHHHhcCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcH---HhHHHHHHHHHhc
Q 038801 230 CCYGLQSVSDAEKVIETMSVLGVRPNESS--FGFLAYLYALKGLQEKIVELESLMNEFGFSSQM---VFYSSLISGYVKL 304 (662)
Q Consensus 230 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~ 304 (662)
.+.. |+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+ .+.|..++. ...+ .+...+..
T Consensus 18 A~~~-g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~~~~g~t-~L~~A~~~ 87 (237)
T 3b7b_A 18 AAEA-GHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL----IKAGALVDPKDAEGST-CLHLAAKK 87 (237)
T ss_dssp HHHH-TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH----HTTTCCCCCCCTTSCC-HHHHHHHT
T ss_pred HHHc-CcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHH----HhCCCCCCCCCCCCCc-HHHHHHHc
Confidence 3444 6665 3444445565554422 12344555666776544433 345543332 1122 33344455
Q ss_pred CChhhHH
Q 038801 305 GNLESAS 311 (662)
Q Consensus 305 g~~~~A~ 311 (662)
|+.+-+.
T Consensus 88 ~~~~~~~ 94 (237)
T 3b7b_A 88 GHYEVVQ 94 (237)
T ss_dssp TCHHHHH
T ss_pred CCHHHHH
Confidence 6655443
No 307
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.37 E-value=2.5e+02 Score=24.30 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.5
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHH
Q 038801 183 FLVDICRKNSNFVAFLKVFEECC 205 (662)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~~ 205 (662)
..+..|.+.|.+++|.++|++..
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHhcchHHHHHHHHHHh
Confidence 35677889999999999999984
No 308
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.11 E-value=2.2e+02 Score=23.71 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 038801 385 DKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQ 435 (662)
Q Consensus 385 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 435 (662)
+....+++.+.+.|+..|...-...+....+.|.+ ....+-.++.++|+.
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 34445555555555544444444444444433322 123344444455443
No 309
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.01 E-value=3.6e+02 Score=26.09 Aligned_cols=332 Identities=10% Similarity=0.010 Sum_probs=154.8
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHH--hHHHHHHH
Q 038801 225 AALEGCCYGLQSVSDAEKVIETMSVLGVRPNESS--FGFLAYLYALKGLQEKIVELESLMNEFGFSSQMV--FYSSLISG 300 (662)
Q Consensus 225 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~ 300 (662)
+.+...+.. |+.+-+..++ +.|..|+... ..+.+...+..|..+-+..+++ .|..++.. ...+.+..
T Consensus 16 t~L~~Aa~~-g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 16 TPLHVASFM-GHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp CHHHHHHHH-TCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHH
T ss_pred CHHHHHHHC-CCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHH
Confidence 344444555 8876555544 5566665432 2345667778888776555554 44433321 11234445
Q ss_pred HHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCccc---ccchHHHHHHH
Q 038801 301 YVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVV---DRSVGFGIISA 377 (662)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~~~~ll~~ 377 (662)
.+..|+.+-+.-++. .-.. .. ..+...++ .+...+..|+.+-+..+++. +..+ +..-. +.+..
T Consensus 87 A~~~g~~~~v~~Ll~-~ga~---~~-~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~-------~~~~~~~~~~g~-t~L~~ 152 (437)
T 1n11_A 87 AARIGHTNMVKLLLE-NNAN---PN-LATTAGHT-PLHIAAREGHVETVLALLEK-------EASQACMTKKGF-TPLHV 152 (437)
T ss_dssp HHHHTCHHHHHHHHH-HTCC---TT-CCCTTCCC-HHHHHHHHTCHHHHHHHHHT-------TCCSCCCCTTSC-CHHHH
T ss_pred HHHCCCHHHHHHHHh-CCCC---CC-CCCCCCCc-HHHHHHHcCCHHHHHHHHhC-------CCCCcCCCCCCC-CHHHH
Confidence 567777765554432 2111 01 11222222 33445567787766666643 2222 21112 24445
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHcCC
Q 038801 378 CVNLGLSDKAHSILDEMNACGCSVGLGV--YVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVG---NYDALIEASITSQ 452 (662)
Q Consensus 378 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g 452 (662)
.+..|+.+- .+.+.+.|..++... -...+...+..|+.+ +++.+.+.|..++.. .++. +...+..|
T Consensus 153 A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~ 223 (437)
T 1n11_A 153 AAKYGKVRV----AELLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTP-LHIAAKQN 223 (437)
T ss_dssp HHHTTCHHH----HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCH-HHHHHHTT
T ss_pred HHHcCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCH-HHHHHHcC
Confidence 566677654 444555665444321 122344556667765 444455566555432 2333 34445667
Q ss_pred CHHHHHHHHHHHHHcCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccc---hhhHHHHHHHHHhcCCHH
Q 038801 453 DFQSAFSLFRDMREARIYDLK---GSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVK---THDWNSIIHAFCKAGRLE 526 (662)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~ 526 (662)
+.+-+.. +.+.|..++. ...+ .+...+..|..+.+..+++. +..++ ..-.+. +...++.|+.+
T Consensus 224 ~~~~~~~----Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~-----~~~~~~~~~~g~t~-L~~A~~~~~~~ 292 (437)
T 1n11_A 224 QVEVARS----LLQYGGSANAESVQGVT-PLHLAAQEGHAEMVALLLSK-----QANGNLGNKSGLTP-LHLVAQEGHVP 292 (437)
T ss_dssp CHHHHHH----HHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTT-----TCCTTCCCTTCCCH-HHHHHHHTCHH
T ss_pred CHHHHHH----HHHcCCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHhc-----CCCCCCCCCCCCCH-HHHHHHcCCHH
Confidence 7654444 4444433322 1222 33344566776655444432 22222 112223 33345667765
Q ss_pred HHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH---HHHHHHHHHHHccC
Q 038801 527 DAKRTLRRMIFLQFEPND---QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH---NLVDAFLYALVKGG 600 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g 600 (662)
-+..+ .+.|..++. .-.+.|..+ +..|+.+-+. .+. +.|..++. .-.+.|.. .++.|
T Consensus 293 ~~~~L----l~~g~~~~~~~~~g~t~L~~A-~~~g~~~~v~----~Ll-------~~gad~n~~~~~g~t~L~~-A~~~g 355 (437)
T 1n11_A 293 VADVL----IKHGVMVDATTRMGYTPLHVA-SHYGNIKLVK----FLL-------QHQADVNAKTKLGYSPLHQ-AAQQG 355 (437)
T ss_dssp HHHHH----HHHTCCTTCCCSSCCCHHHHH-HHSSCSHHHH----HHH-------HTTCCTTCCCTTSCCHHHH-HHHTT
T ss_pred HHHHH----HhCCccCCCCCCCCCCHHHHH-HHcCcHHHHH----HHH-------hcCCCCCCCCCCCCCHHHH-HHHCC
Confidence 44444 444544443 223334333 4456655333 333 33444432 22233333 34566
Q ss_pred chHHHHHHHHHHHhCCCCCC
Q 038801 601 FFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 601 ~~~~A~~~~~~m~~~~~~p~ 620 (662)
+.+ +++.+.+.|..|+
T Consensus 356 ~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 356 HTD----IVTLLLKNGASPN 371 (437)
T ss_dssp CHH----HHHHHHHTTCCSC
T ss_pred hHH----HHHHHHHCcCCCC
Confidence 654 4444445666654
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.98 E-value=1.1e+02 Score=30.74 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCc-c------cHHH-HHHHHHHcCCHHHHHHHHHHHHhc
Q 038801 220 IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNE-S------SFGF-LAYLYALKGLQEKIVELESLMNEF 285 (662)
Q Consensus 220 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~------t~~~-li~~~~~~g~~~~a~~~~~~~~~~ 285 (662)
...+|.+++.|... +.++.|..+..+.. -|.. . +|.. +.+.+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~-~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNN-GEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHS-SCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcc-CcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45678888888887 88888888888764 2211 1 2221 234555677777777777766554
No 311
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.60 E-value=2.7e+02 Score=26.86 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 513 NSIIHAFCKAGRLEDAKRTLRRMI 536 (662)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~ 536 (662)
..+...|...|+.++|..++++..
T Consensus 131 ~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 131 SEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334444445555555555555444
No 312
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.58 E-value=2e+02 Score=24.51 Aligned_cols=32 Identities=19% Similarity=-0.060 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEAS 448 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 448 (662)
.+.+.|+-.+-+|.+.|..|....-..++.+.
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44555555555555554444444433333333
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.98 E-value=91 Score=27.24 Aligned_cols=51 Identities=4% Similarity=-0.091 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 038801 386 KAHSILDEMNACGCSV-GLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQL 436 (662)
Q Consensus 386 ~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 436 (662)
....+|..|..+|+-. -...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555555422 23445555555555555555555555555544343
No 314
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.84 E-value=1.7e+02 Score=27.14 Aligned_cols=45 Identities=4% Similarity=0.056 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038801 527 DAKRTLRRMIFLQFEPND--QTYLSLINGYVTAEQYFSVLMMWHEIK 571 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~ 571 (662)
...++-.-+-..++.|.. -+...-|..+.+.+++..|..+-+++.
T Consensus 179 R~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLL 225 (320)
T 3mkr_B 179 RICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLL 225 (320)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345555556555666655 366777888888899999999998888
No 315
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.19 E-value=2.5e+02 Score=23.70 Aligned_cols=171 Identities=11% Similarity=-0.043 Sum_probs=97.4
Q ss_pred CccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHH
Q 038801 217 KPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSS 296 (662)
Q Consensus 217 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (662)
.++...-...+..+... +..+ +...+..+.. .+|...-...+.++.+.++.+....+. .+.+ .+|..+-..
T Consensus 30 ~~~~~vR~~A~~~L~~~-~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---~~~~~vr~~ 100 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKI-GDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQS 100 (211)
T ss_dssp CSSHHHHHHHHHHHHHH-CCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-CCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHH
Confidence 34444444555556654 5533 3333333433 345555556677777777654333333 3332 367777778
Q ss_pred HHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHH
Q 038801 297 LISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIIS 376 (662)
Q Consensus 297 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~ 376 (662)
.+.++.+.|+.+. ...+.+.+.+ ++..+-...+.++.+.|+.+ +...+..+.. .++..+-...+.
T Consensus 101 a~~aL~~~~~~~~-~~~L~~~l~d-------~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~ 165 (211)
T 3ltm_A 101 AAVALGQIGDERA-VEPLIKALKD-------EDWFVRIAAAFALGEIGDER-AVEPLIKALK------DEDGWVRQSAAD 165 (211)
T ss_dssp HHHHHHHHCCGGG-HHHHHHHTTC-------SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHH
T ss_pred HHHHHHHhCcHHH-HHHHHHHHhC-------CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc------CCCHHHHHHHHH
Confidence 8888888887544 4445666654 37777777888888887754 4444444432 234455556777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCK 415 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (662)
++.+.+. ..+...+..+.+. ++..+-...+.++.+
T Consensus 166 aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 166 ALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 7777776 3455555555542 344444444444443
No 316
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.15 E-value=2.9e+02 Score=25.92 Aligned_cols=59 Identities=7% Similarity=0.117 Sum_probs=33.3
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc---HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 038801 183 FLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN---IYACNAALEGCCYGLQSVSDAEKVIETMSVLGV 252 (662)
Q Consensus 183 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~ 252 (662)
.++.-|...|+.++|.++++++. .|. ......+..++-+.....+.+..++..+.+.|+
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~-----------~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA-----------SPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC-----------CGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----------CcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 35555667899999999999872 222 223333333333221223456667777765543
No 317
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.91 E-value=1.5e+02 Score=24.06 Aligned_cols=62 Identities=8% Similarity=-0.000 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Q 038801 477 LTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGR--LEDAKRTLRRMIFLQF 540 (662)
Q Consensus 477 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~ 540 (662)
..++.-|...|+.++|.+.++++.. +......++.++..++-+.++ .+.+..++..+...|+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~--p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4455555556666666666665532 111112233334444433222 3445556666655443
No 318
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.26 E-value=2.8e+02 Score=23.90 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038801 417 HRTAEATQLVMDISSSGLQLDVGNYDALIEASI 449 (662)
Q Consensus 417 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 449 (662)
.+.+.|+-++-+|.+.|..|....-..++.+.-
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE 81 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISACE 81 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 445555555555555544444444444444433
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.82 E-value=1.3e+02 Score=23.97 Aligned_cols=59 Identities=8% Similarity=0.035 Sum_probs=29.8
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 393 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
.+.+.|++.+.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 345556555433 22334444445555566666666666554444444444444444444
No 320
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.70 E-value=2.7e+02 Score=28.07 Aligned_cols=24 Identities=21% Similarity=0.438 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHH
Q 038801 291 MVFYSSLISGYVKLGNLESASRTI 314 (662)
Q Consensus 291 ~~~~~~li~~~~~~g~~~~A~~~~ 314 (662)
...+|.+++.|...+.++.|..++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lv 254 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFI 254 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHH
Confidence 344555555555555555555543
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=28.16 E-value=4.5e+02 Score=26.00 Aligned_cols=93 Identities=10% Similarity=-0.123 Sum_probs=57.7
Q ss_pred CCcccHHHHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCC
Q 038801 175 MPFELWGGFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRP 254 (662)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p 254 (662)
|.....+.--...+...|++++|-++--...+ |+-++..|.+.+-.+=... |+..--+..|..+.+.| ..
T Consensus 358 pGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--------giLRt~~Ti~rFk~vp~~p-gq~splL~YF~~Ll~~g-~L 427 (494)
T 1bpo_A 358 AGAEELFARKFNALFAQGNYSEAAKVAANAPK--------GILRTPDTIRRFQSVPAQP-GQTSPLLQYFGILLDQG-QL 427 (494)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--------GSSCSHHHHHHHTTSCCCT-TSCCHHHHHHHHHHHHS-CC
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--------ccccCHHHHHHHhcCCCCC-CCCCHHHHHHHHHhccC-cc
Confidence 33333333333445568999999888776654 6778888888777765555 88888888888888877 34
Q ss_pred CcccHHHHHHHHHHcCCHHHHHH
Q 038801 255 NESSFGFLAYLYALKGLQEKIVE 277 (662)
Q Consensus 255 ~~~t~~~li~~~~~~g~~~~a~~ 277 (662)
+..-=--+++.....|+.+-.++
T Consensus 428 n~~ESlEl~r~vL~q~r~~llek 450 (494)
T 1bpo_A 428 NKYESLELCRPVLQQGRKQLLEK 450 (494)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHhhHHhHHHHhccHHHHHHH
Confidence 43222223444445555444333
No 322
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=28.03 E-value=2.6e+02 Score=23.24 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=7.7
Q ss_pred HHHHHHHHHHCCCCCC
Q 038801 387 AHSILDEMNACGCSVG 402 (662)
Q Consensus 387 a~~~~~~m~~~~~~~~ 402 (662)
..++.+.+++.|..++
T Consensus 93 ~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 93 TTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3444555555554443
No 323
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=27.93 E-value=3.7e+02 Score=24.98 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=31.8
Q ss_pred CCCCcccH--HHHHHHHHHHHccCchHHHHHHHHHHHhCCCCCC
Q 038801 579 QKGIKFEH--NLVDAFLYALVKGGFFDAVMQVVEKSQEMKVFVD 620 (662)
Q Consensus 579 ~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 620 (662)
.-.++|.. -+...-+....|.+++..|..+.+++.+.++.++
T Consensus 198 ~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 198 KAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp GSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 44566655 3455666678899999999999999999887654
No 324
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.63 E-value=69 Score=27.16 Aligned_cols=45 Identities=16% Similarity=0.075 Sum_probs=27.9
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHhCCCCCCHHhHHHHHHHHhhh
Q 038801 590 DAFLYALVKGGFFDAVMQVVEKSQEMKVFVDKWKYKQAFMENHKK 634 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~~~~~~~~ 634 (662)
...+..|.+.|.+++|.+++++.......+......|......+|
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 345567999999999999999976555444444444544444444
No 325
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.10 E-value=2.5e+02 Score=22.79 Aligned_cols=52 Identities=4% Similarity=0.111 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 038801 384 SDKAHSILDEMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLD 437 (662)
Q Consensus 384 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 437 (662)
.+....+++.+.+.|+..|...-...+....+.| .....+-.++.++|+..+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~~ 97 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISRE 97 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCHH
Confidence 3556677777777777766666666666665544 234567777778877543
No 326
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.03 E-value=2.9e+02 Score=23.60 Aligned_cols=192 Identities=10% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHH
Q 038801 261 FLAYLYALKGLQEKIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETYCEVVKGF 340 (662)
Q Consensus 261 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 340 (662)
+.+...++.|+.+.+..+++. ....+......-.+.+...+..|+.+-+..++..-...........|...++.|..+.
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~ 83 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAV 83 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCcccccc---------------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh
Q 038801 341 LQNGNVKGLANLIIEAQKLEPSGIVVDRS---------------VGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGV 405 (662)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---------------~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 405 (662)
.... .++++.+.+ .|..++.. .-.+.+...+..|+.+-+..+++. ...+...-..
T Consensus 84 ~~~~-----~~~v~~Ll~---~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~ 153 (232)
T 2rfa_A 84 INQN-----VNLVRALLA---RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH--GADIRAQDSL 153 (232)
T ss_dssp HTTC-----HHHHHHHHH---TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTT
T ss_pred HcCC-----HHHHHHHHh---CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCC
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------hhhHHHHHHHHHcCCCHHHHHHHHHH
Q 038801 406 YVPTLKAYCKEHRTAEATQLVMDISSSGLQLD--------VGNYDALIEASITSQDFQSAFSLFRD 463 (662)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (662)
-.+-+...+..|+.+-+..+++.+.+.|..++ ...-.+-+...++.|+.+-+.-+++.
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
No 327
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.71 E-value=1.3e+02 Score=24.20 Aligned_cols=59 Identities=3% Similarity=0.031 Sum_probs=29.4
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 393 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555544432 23344445555555566666666666554445555444445555444
No 328
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.02 E-value=2.7e+02 Score=22.78 Aligned_cols=63 Identities=3% Similarity=0.034 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-HH-----HhcCCHHHHHHHHHHHHHhhc
Q 038801 512 WNSIIHAFCKAGRLEDAKRTLRRMIFLQFEP--NDQTYLSLIN-GY-----VTAEQYFSVLMMWHEIKRKIS 575 (662)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~-~~-----~~~~~~~~a~~~~~~m~~~~~ 575 (662)
|..-+..| ..|++=+|.+++++.-...-.+ ....|..||+ .. .+.|+...|..++.+....+.
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34444444 4599999999999988765455 4457777777 22 236999999999999986654
No 329
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.89 E-value=47 Score=29.68 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=10.1
Q ss_pred HHccCchHHHHHHHHHH
Q 038801 596 LVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~m 612 (662)
.++.|+.+-+..++++-
T Consensus 232 A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 232 AAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 34567766666666554
No 330
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.52 E-value=2.5e+02 Score=26.38 Aligned_cols=38 Identities=16% Similarity=-0.025 Sum_probs=18.4
Q ss_pred hcCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 038801 249 VLGVRPNESSFGFLAYLYALKGLQEKIVELESLMNEFG 286 (662)
Q Consensus 249 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g 286 (662)
+.|..++...-.+.+...+..|..+-+..+++.....|
T Consensus 74 ~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 74 SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccC
Confidence 33433433222334455556666666666655544434
No 331
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.01 E-value=1e+02 Score=19.25 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=27.8
Q ss_pred CCchhHHHHHHHHHhcCCCCCcccHHHHHHHHhhcCCcHHHHHHHHHHH
Q 038801 156 NTAAPAFALVKCMFKNRYFMPFELWGGFLVDICRKNSNFVAFLKVFEEC 204 (662)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 204 (662)
+++..|+++++.+.+.|-.|+.-. ..|-... ++.-.....++|+.+
T Consensus 7 RDv~RaiELle~lq~sgevp~~KL--~aLq~VL-qSdF~~aVREVYEhv 52 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAKL--ASLQQVL-QSEFFGAVREVYETV 52 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHHH--HHHHHHH-SCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHH--HHHHHHH-HHHHHHHHHHHHHHc
Confidence 356788889988888776554332 2233333 455556666666653
No 332
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.87 E-value=4.5e+02 Score=24.96 Aligned_cols=213 Identities=8% Similarity=-0.039 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHhhhhhhcCCCCcc----HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCcc
Q 038801 182 GFLVDICRKNSNFVAFLKVFEECCRIALDENLDFMKPN----IYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNES 257 (662)
Q Consensus 182 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 257 (662)
..++.-|...|+.++|.+.++++ ..|+ ...+..+..++-+....-+.+-.++..+...|+-+...
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL-----------~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~ 84 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREM-----------RAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDN 84 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH-----------TCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh-----------CCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHH
Q ss_pred cHHHHHHHHHHcCCHH----HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHHHH
Q 038801 258 SFGFLAYLYALKGLQE----KIVELESLMNEFGFSSQMVFYSSLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKETY 333 (662)
Q Consensus 258 t~~~li~~~~~~g~~~----~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 333 (662)
....+...+....|.. .|..++..+...-+.-+....+.+-..+...+...-...++....+.. +....
T Consensus 85 ~~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k~~-------G~~~l 157 (364)
T 3l6a_A 85 FMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQ-------DREWL 157 (364)
T ss_dssp HHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHHHS-------CHHHH
T ss_pred HHHHHHHHHhhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHHhc-------CHHHH
Q ss_pred HHHHHHHH---------hcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh
Q 038801 334 CEVVKGFL---------QNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLG 404 (662)
Q Consensus 334 ~~li~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 404 (662)
..+...-. .....+...+.++.-.- ..+.|-...-..|..........++..+..+.-......++..
T Consensus 158 ~~l~~~sgl~l~~FlPe~~~~~~~~~e~~~~~~L---~~l~~~~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~ 234 (364)
T 3l6a_A 158 TELFQQSKVNMQKMLPEIDQNKDRMLEILEGKGL---SFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKG 234 (364)
T ss_dssp HHHHHHHTCCSGGGSCGGGCSHHHHHHHHHHHTC---GGGCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHH
T ss_pred HHHHHHcCCCHHHhCCccccchhHHHHHHHhCCC---cccCCHHHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHH
Q ss_pred hHHHHHHHHHH
Q 038801 405 VYVPTLKAYCK 415 (662)
Q Consensus 405 ~~~~li~~~~~ 415 (662)
..++++.+.++
T Consensus 235 fir~L~t~v~~ 245 (364)
T 3l6a_A 235 FVNILMTSFLQ 245 (364)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 333
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.81 E-value=1.7e+02 Score=20.29 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=34.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCch
Q 038801 534 RMIFLQFEPNDQTYLSLINGYVTAE-QYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFF 602 (662)
Q Consensus 534 ~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 602 (662)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+. +.+...+..|....+..+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~-------~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLI-------DMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHH-------HTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHH-------HhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3555666666543 33445554443 4555667777776 444445555666666666665543
No 334
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.56 E-value=1.4e+02 Score=24.94 Aligned_cols=187 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccH--HHHHHHHHhcC
Q 038801 410 LKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSY--LTIMTGLMENH 487 (662)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~ 487 (662)
+...+..|+.+....++..-...--..|..-++.|..+..... .++++.+.+.|..++.... ...+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred CHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038801 488 RPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMW 567 (662)
Q Consensus 488 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 567 (662)
+.+-+..+++.... .+......-...+...+..|+.+-+..+++.-...--..|..-.+.|..++........-.++.
T Consensus 84 ~~~~~~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 84 RTEILAYMLKHATP--DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp CHHHHHHHHHHSCC--CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CHHHHHHHHhccCc--ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Q ss_pred HHHHHhhcccCCCCCcccH--HHHHHHHHHHHccCchHHHHHHHH
Q 038801 568 HEIKRKISTDGQKGIKFEH--NLVDAFLYALVKGGFFDAVMQVVE 610 (662)
Q Consensus 568 ~~m~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~ 610 (662)
+.+. +.|..++. ..-.+-+....+.|+.+-+.-+++
T Consensus 162 ~~Ll-------~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 162 KLLM-------ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp HHHH-------HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred HHHH-------HCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 335
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.55 E-value=2.8e+02 Score=22.66 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=34.5
Q ss_pred HcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHcCCCHHHHHHHHHHHHH
Q 038801 415 KEHRTAEATQLVMDISSSGLQL--DVGNYDALIE-A-----SITSQDFQSAFSLFRDMRE 466 (662)
Q Consensus 415 ~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 466 (662)
..|++-+|-++++..-.....+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777776654344 4455666666 2 3456888888888887765
No 336
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.47 E-value=4.2e+02 Score=24.39 Aligned_cols=148 Identities=8% Similarity=0.050 Sum_probs=68.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHcC
Q 038801 377 ACVNLGLSDKAHSILDEMNACGCSVGL---GVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGN--YDALIEASITS 451 (662)
Q Consensus 377 ~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~ 451 (662)
..+..|+.+-+..+++ +.|..++. .-.+.+..+... +.......+.+.+.+.|..++... -.+.+...+..
T Consensus 174 ~A~~~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~ 249 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLD---EMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249 (337)
T ss_dssp HHHHHTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence 3455677665444433 23433322 222233332222 222223344455567776654321 12234455667
Q ss_pred CCHHHHHHHHHHHHHcCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHH
Q 038801 452 QDFQSAFSLFRDMREARIYDL---KGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDA 528 (662)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 528 (662)
|..+.+..++.. .|..++ ..-.+.|. .-+..|+.+-+.-++ +. |..++..+ . +..-++.|+.+
T Consensus 250 ~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~iv~~Ll----~~-GAd~n~~~--~-L~~A~~~~~~~-- 315 (337)
T 4g8k_A 250 KHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKKIAELLC----KR-GASTDCGD--L-VMTARRNYDHS-- 315 (337)
T ss_dssp TCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHHHHHHHH----TT-SCSSTTCC--H-HHHHHHTTCHH--
T ss_pred hhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHHHHHHHH----HC-CCCCCCCC--H-HHHHHHcCCHH--
Confidence 777665554432 222221 11222333 334566665444433 32 66666543 3 33345667754
Q ss_pred HHHHHHHHhCCCCCCH
Q 038801 529 KRTLRRMIFLQFEPND 544 (662)
Q Consensus 529 ~~~~~~m~~~~~~p~~ 544 (662)
+.+.+++.|-.||.
T Consensus 316 --iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 --LVKVLLSHGAKEDF 329 (337)
T ss_dssp --HHHHHHHTTCCC--
T ss_pred --HHHHHHHCcCCCCC
Confidence 55667778877775
No 337
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=23.63 E-value=4e+02 Score=23.89 Aligned_cols=181 Identities=9% Similarity=0.003 Sum_probs=83.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHH
Q 038801 339 GFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLG---VYVPTLKAYCK 415 (662)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~ 415 (662)
..+..|+.+-+..+++ .|..++...-.+.+...+..|+.+-+ +.+.+.|..++.. -.+ .+...+.
T Consensus 37 ~A~~~g~~~~v~~Ll~-------~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t-~L~~A~~ 104 (285)
T 3kea_A 37 YAIADNNVRLVCTLLN-------AGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNT-ALYYAVD 104 (285)
T ss_dssp HHHHTTCHHHHHHHHH-------TTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHh-------CCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCc-HHHHHHH
Confidence 3445666665555444 23333332222344455566766544 3444556544322 222 3344556
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhcCCHHH
Q 038801 416 EHRTAEATQLVMDISSSGLQLDVG---NYDALIEASITSQDFQSAFSLFRDMREARIYD-LKGSYLTIMTGLMENHRPEL 491 (662)
Q Consensus 416 ~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~ 491 (662)
.|+.+-+.-+++ .|..++.. .+.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|..+-
T Consensus 105 ~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 677654444443 34444332 223444455556665443 3334444322 21133444555566777776
Q ss_pred HHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 038801 492 MAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQ 545 (662)
Q Consensus 492 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 545 (662)
+.-+++.-..- .. .+..-++..+...+..|+. ++.+.+.+.|..++..
T Consensus 177 v~~Ll~~gad~-n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 177 MILLLDYMTST-NT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHHHHT-CT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred HHHHHHcCCCC-Cc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 66666553221 11 1111112222333445553 4455556667666654
No 338
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.63 E-value=1.3e+02 Score=24.17 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=30.2
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 393 EMNACGCSVGLGVYVPTLKAYCKEHRTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 393 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3445565555432 23344444444 4567777777766655555555444444444444
No 339
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.34 E-value=2.2e+02 Score=20.88 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHH
Q 038801 527 DAKRTLRRMIFLQFEPNDQTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAF 592 (662)
Q Consensus 527 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l 592 (662)
.|.++.++....|+.|+.....-++..|..-+- + +.++.++..+.... ..|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts--~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTS--THKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHH--HTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHh--cCCCCCCHHHHHHH
Confidence 466777777777888888777777777776553 2 44544444433221 34667776655543
No 340
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.34 E-value=1.4e+02 Score=23.51 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=25.6
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 394 MNACGCSVGLGVYVPTLKAYCKEH-RTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
+.+.|++.+..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 344555444322 22333444443 44456666666655544444444333334444333
No 341
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=23.32 E-value=3.1e+02 Score=26.61 Aligned_cols=292 Identities=11% Similarity=0.054 Sum_probs=129.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccc--hH
Q 038801 296 SLISGYVKLGNLESASRTILLCLGGGNMEQSDFSKE--TYCEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRS--VG 371 (662)
Q Consensus 296 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~~ 371 (662)
+.+...+..|+.+-+..+ ++. |..|+.. ...+.+...+..|+.+-+..+++. |..++.. .-
T Consensus 16 t~L~~Aa~~g~~~~v~~L----l~~----g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-------g~~~~~~~~~g 80 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNL----LQR----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-------KAKVNAKAKDD 80 (437)
T ss_dssp CHHHHHHHHTCHHHHHHH----HHT----TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH-------TCCSSCCCTTS
T ss_pred CHHHHHHHCCCHHHHHHH----HHc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-------CCCCCCCCCCC
Confidence 445556677887765444 343 3333322 223455556677777766655543 2222211 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHH
Q 038801 372 FGIISACVNLGLSDKAHSILDEMNACGCSVGLGV--YVPTLKAYCKEHRTAEATQLVMDISSSGLQLD---VGNYDALIE 446 (662)
Q Consensus 372 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~ 446 (662)
.+.+...+..|+.+-+. .+.+.|..++... -...+...+..|+.+-+..+++ .|..++ ...++ .+.
T Consensus 81 ~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t-~L~ 151 (437)
T 1n11_A 81 QTPLHCAARIGHTNMVK----LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGFT-PLH 151 (437)
T ss_dssp CCHHHHHHHHTCHHHHH----HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCC-HHH
T ss_pred CCHHHHHHHCCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCC-HHH
Confidence 23444555667765443 3444454433211 1123445566677765555443 333322 22222 333
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCcc--cHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccch---hhHHHHHHHHHh
Q 038801 447 ASITSQDFQSAFSLFRDMREARIYDLKG--SYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKT---HDWNSIIHAFCK 521 (662)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~ 521 (662)
..+..|+.+-+ +.+.+.|..++.. .-...+...+..|+.+-+..+++. +..++. .-++. +...+.
T Consensus 152 ~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~g~t~-L~~A~~ 221 (437)
T 1n11_A 152 VAAKYGKVRVA----ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-----GGSPHSPAWNGYTP-LHIAAK 221 (437)
T ss_dssp HHHHTTCHHHH----HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-----TCCSCCCCTTCCCH-HHHHHH
T ss_pred HHHHcCCHHHH----HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC-----CCCCCCcCCCCCCH-HHHHHH
Confidence 44556766544 3344455433321 111233444556665544433332 222221 12233 334456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccH---HHHHHHHHH
Q 038801 522 AGRLEDAKRTLRRMIFLQFEPND---QTYLSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEH---NLVDAFLYA 595 (662)
Q Consensus 522 ~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~---~~~~~l~~~ 595 (662)
.|+.+-+..+ .+.|..++. .-.+.|. ..+..|+.+-+ +.+. +.|..++. .-.+.| ..
T Consensus 222 ~~~~~~~~~L----l~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v----~~Ll-------~~~~~~~~~~~~g~t~L-~~ 284 (437)
T 1n11_A 222 QNQVEVARSL----LQYGGSANAESVQGVTPLH-LAAQEGHAEMV----ALLL-------SKQANGNLGNKSGLTPL-HL 284 (437)
T ss_dssp TTCHHHHHHH----HHTTCCTTCCCTTCCCHHH-HHHHTTCHHHH----HHHH-------TTTCCTTCCCTTCCCHH-HH
T ss_pred cCCHHHHHHH----HHcCCCCCCCCCCCCCHHH-HHHHCCCHHHH----HHHH-------hcCCCCCCCCCCCCCHH-HH
Confidence 6776544444 444444432 2223333 33445665433 3333 33433322 112222 23
Q ss_pred HHccCchHHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHhhhhhhhHHHHH
Q 038801 596 LVKGGFFDAVMQVVEKSQEMKVFVD-----KWKYKQAFMENHKKLKVAKLRKR 643 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~~~~~~~~~~~~a~~~~~ 643 (662)
.++.|+.+-+.-+++ .|..++ ..+. +..+...|+.+..+.+.+
T Consensus 285 A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~ 332 (437)
T 1n11_A 285 VAQEGHVPVADVLIK----HGVMVDATTRMGYTP-LHVASHYGNIKLVKFLLQ 332 (437)
T ss_dssp HHHHTCHHHHHHHHH----HTCCTTCCCSSCCCH-HHHHHHSSCSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh----CCccCCCCCCCCCCH-HHHHHHcCcHHHHHHHHh
Confidence 345677664444443 343322 2233 444455677666555544
No 342
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.24 E-value=2.1e+02 Score=22.78 Aligned_cols=15 Identities=0% Similarity=-0.026 Sum_probs=7.1
Q ss_pred cCCHHHHHHHHHHHH
Q 038801 557 AEQYFSVLMMWHEIK 571 (662)
Q Consensus 557 ~~~~~~a~~~~~~m~ 571 (662)
.+..-.|.++++.+.
T Consensus 34 ~~~~~sa~ei~~~l~ 48 (145)
T 2fe3_A 34 SMAHPTADDIYKALE 48 (145)
T ss_dssp CSSCCCHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHH
Confidence 333444555555554
No 343
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.16 E-value=1.5e+02 Score=20.64 Aligned_cols=11 Identities=18% Similarity=0.138 Sum_probs=4.5
Q ss_pred HHHHHHHHHhC
Q 038801 422 ATQLVMDISSS 432 (662)
Q Consensus 422 A~~~~~~m~~~ 432 (662)
+.++++.+.+.
T Consensus 36 ~~el~~~l~~~ 46 (83)
T 2fu4_A 36 AEDLYKRLIDM 46 (83)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 33444444333
No 344
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=22.88 E-value=2.6e+02 Score=21.36 Aligned_cols=76 Identities=12% Similarity=0.001 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHhhhhhhcCCCCccHHHHHHHHHHHhccCCChhHHHHHHHHHHh-cCCCCCcccHHHHHHHHHHcCC
Q 038801 193 NFVAFLKVFEECCRIALDENLDFMKPNIYACNAALEGCCYGLQSVSDAEKVIETMSV-LGVRPNESSFGFLAYLYALKGL 271 (662)
Q Consensus 193 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~ 271 (662)
++..|+.-+++... ...|......++..+-.. ++.++++.+...+ .|+ +..++...++.+.+.|-
T Consensus 3 ~~~~al~~L~e~~~---------~~~~~~~~dg~i~~fe~t---~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~gl 68 (119)
T 1wty_A 3 SLARAVERLKAALE---------RPKDEFIRDSAIQRFEFT---FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGL 68 (119)
T ss_dssp CHHHHHHHHHHHHS---------SCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCC
Confidence 34555555555533 234656666666666544 6666666666543 455 46667777777776666
Q ss_pred HHHHHHHHHHHH
Q 038801 272 QEKIVELESLMN 283 (662)
Q Consensus 272 ~~~a~~~~~~~~ 283 (662)
++.. +.+..|.
T Consensus 69 I~~~-~~w~~m~ 79 (119)
T 1wty_A 69 LPED-PFWLEML 79 (119)
T ss_dssp SCCC-HHHHHHH
T ss_pred CCcH-HHHHHHH
Confidence 5444 3344443
No 345
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.03 E-value=1.2e+02 Score=19.86 Aligned_cols=30 Identities=23% Similarity=0.053 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038801 237 VSDAEKVIETMSVLGVRPNESSFGFLAYLY 266 (662)
Q Consensus 237 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 266 (662)
.++|.+.|.+|.+..-.+...||.-.|+.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 356777777775543344556777777766
No 346
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.97 E-value=2.9e+02 Score=21.89 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHH
Q 038801 340 FLQNGNVKGLANLI 353 (662)
Q Consensus 340 ~~~~~~~~~a~~~~ 353 (662)
.++.|+.+.+..++
T Consensus 15 A~~~g~~~~v~~ll 28 (165)
T 3twr_A 15 AAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHTCHHHHHHHC
T ss_pred HHHhCCHHHHHHHH
Confidence 34455655555444
No 347
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.94 E-value=1.5e+02 Score=19.45 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCCCCc
Q 038801 218 PNIYACNAALEGCCYGLQSVSDAEKVIETMSVLGVRPNE 256 (662)
Q Consensus 218 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 256 (662)
-|......++.+ +.|+.+.|+..+-+|...+..|+.
T Consensus 23 ld~~~I~~vL~a---~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 23 MDQEVIRSVLEA---QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp SCHHHHHHHHTT---TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred CCHHHHHHHHHH---cCCCHHHHHHHHHcCcCCCCCCCC
Confidence 344444444433 348888888888888766666653
No 348
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.51 E-value=2.6e+02 Score=22.40 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=38.6
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 038801 427 MDISSSGLQLDVGNYDALIEASITSQDFQSAFSLFRDMREARIYDLKGSYLTIMTGLMENHR 488 (662)
Q Consensus 427 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 488 (662)
+.+.+.|++++. --..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 446667766443 3334556666666677888888888877655566666666666666664
No 349
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.32 E-value=2.3e+02 Score=23.13 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCchhHHHHHHHHHhc
Q 038801 124 RAFASVVYVIEKNPKLLDFQTVHTLLGSMRNANTAAPAFALVKCMFKN 171 (662)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 171 (662)
.+++.+...++..+.+++..- ..++..+...+..-.|.++++.+.+.
T Consensus 15 ~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 334444444555566655433 34455555556666677777777665
No 350
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.17 E-value=6.1e+02 Score=25.09 Aligned_cols=127 Identities=8% Similarity=0.001 Sum_probs=57.0
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038801 468 RIYDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPNDQTY 547 (662)
Q Consensus 468 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 547 (662)
|++--...|..-...+...|++++|.++--.... |+--+..|.+.+-..=..-|...--+..|..+.+.| +.+..-=
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ES 432 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYES 432 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHH
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHh
Confidence 3333333444444555555555555555444333 232333333333322223344444555555555554 3444222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhcccCCCCCcccHHHHHHHHHHHHccCchHHHHHHHHHH
Q 038801 548 LSLINGYVTAEQYFSVLMMWHEIKRKISTDGQKGIKFEHNLVDAFLYALVKGGFFDAVMQVVEKS 612 (662)
Q Consensus 548 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 612 (662)
--+++.-...|+.+-..+.+. +..+..+...-+.+ +..+..-|..+|.++
T Consensus 433 lEl~r~vL~q~r~~llekWl~----------e~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLEKWLK----------EDKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----------HTCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred hHHhHHHHhccHHHHHHHHHh----------cCCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 223344444555444444333 23345554433322 444566666666664
No 351
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.95 E-value=1.6e+02 Score=23.79 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=27.9
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 038801 394 MNACGCSVGLGVYVPTLKAYCKEH-RTAEATQLVMDISSSGLQLDVGNYDALIEASITSQ 452 (662)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 452 (662)
+.+.|++.+..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 445555544332 22333343333 44456666666666554445444444444444444
No 352
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.81 E-value=3.9e+02 Score=22.72 Aligned_cols=43 Identities=16% Similarity=-0.103 Sum_probs=25.2
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 038801 374 IISACV---NLGLSDKAHSILDEMNACGCSVGLGVYVPTLKAYCKE 416 (662)
Q Consensus 374 ll~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (662)
+|+++- +-.+.+.|.-.+.+|++.|..|.-..-..++-+.-..
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDI 55 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDV 55 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 444443 3467778888888888877655544444444444333
No 353
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.23 E-value=4.3e+02 Score=22.96 Aligned_cols=24 Identities=4% Similarity=-0.068 Sum_probs=15.4
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhH
Q 038801 626 QAFMENHKKLKVAKLRKRNFKKME 649 (662)
Q Consensus 626 ~~~~~~~~~~~~a~~~~~~~~~l~ 649 (662)
+..+...|+.+..+.+.++--...
T Consensus 225 L~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 225 LKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCC
Confidence 555666678777777776554443
No 354
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.03 E-value=4e+02 Score=22.56 Aligned_cols=187 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcccccchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH--HHHH
Q 038801 334 CEVVKGFLQNGNVKGLANLIIEAQKLEPSGIVVDRSVGFGIISACVNLGLSDKAHSILDEMNACGCSVGLGVYV--PTLK 411 (662)
Q Consensus 334 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~ 411 (662)
+..+...++.|+.+....++..-.. .-...|..-.+.+..++.... .++++.+.+.|..++..... +.+.
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~---~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~ 78 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKS---LATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLH 78 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGG---GGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchh---hhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCcccHH--HHHHHHHhcC
Q 038801 412 AYCKEHRTAEATQLVMDISSSGLQLDVGNYD--ALIEASITSQDFQSAFSLFRDMREARIYDLKGSYL--TIMTGLMENH 487 (662)
Q Consensus 412 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~ 487 (662)
..+..|+.+ +++.+.+.|..++..... +.+...+..|+.+ +++.+.+.|..++..... +.+...+..|
T Consensus 79 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 150 (231)
T 3aji_A 79 IAASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKG 150 (231)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HHHHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Q ss_pred CHHHHHHHHHHHhhCCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038801 488 RPELMAAFLDEVVEDPRVEVKTHDWNSIIHAFCKAGRLEDAKRTLRRMIFLQFEPN 543 (662)
Q Consensus 488 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 543 (662)
+.+.+..+++ ....+......-...+...+..|+ .++++.+.+.|..++
T Consensus 151 ~~~~v~~Ll~---~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 151 NLKMVHILLF---YKASTNIQDTEGNTPLHLACDEER----VEEAKFLVTQGASIY 199 (231)
T ss_dssp CHHHHHHHHH---TTCCSCCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCSC
T ss_pred CHHHHHHHHh---cCCCccccCCCCCCHHHHHHHCCC----HHHHHHHHHCCCCCC
Done!