BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038802
(532 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 42 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 94
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 95 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 152
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 153 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 212 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 250
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 13/246 (5%)
Query: 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXX 106
I G I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 107 XXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA 166
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTA 203
Query: 167 GESVVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNH 221
+ L + +V+ SP NG + + D+T+KLWD + + K+ +
Sbjct: 204 SGQCLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 222 GKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES 279
K F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENII 318
Query: 280 GEEAMQ 285
A++
Sbjct: 319 ASAALE 324
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Query: 151 LVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210
LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D +V++WDV+
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKT 160
Query: 211 ENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYSMESHNKTVTS 269
+ H P+ V F G LI ++ + + +IWD G + ++ N V+
Sbjct: 161 GKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 270 VCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
V G IL+ LD +K++DY K K
Sbjct: 220 VKFSPNGK---------YILAATLDNTLKLWDYSKGKC 248
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 13/246 (5%)
Query: 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXX 106
I G I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 107 XXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA 166
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTA 201
Query: 167 GESVVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNH 221
+ L + +V+ SP NG + + D+T+KLWD + + K+ +
Sbjct: 202 SGQCLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 222 GKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES 279
K F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENII 316
Query: 280 GEEAMQ 285
A++
Sbjct: 317 ASAALE 322
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 35 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 87
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 88 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 145
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 146 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 205 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 243
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 124/302 (41%), Gaps = 31/302 (10%)
Query: 9 QPTTVSKNFPVKPKLKPKPRNLSQTPES---------------KYWSSFK---PHQIPGL 50
+PT V N+ +K L + +S S K W ++ I G
Sbjct: 22 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 81
Query: 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXX 110
I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 141
Query: 111 XXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV 170
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 200
Query: 171 VLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKPI 225
+ L + +V+ SP NG + + D+T+KLWD + + K+ + K
Sbjct: 201 LKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 256
Query: 226 EDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEA 283
F +GG +++ + N V IW+L ++V ++ H V S N A
Sbjct: 257 IFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Query: 284 MQ 285
++
Sbjct: 316 LE 317
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 24 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 77 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 134
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 135 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 194 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 232
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 13/246 (5%)
Query: 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXX 106
I G I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 107 XXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA 166
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTA 185
Query: 167 GESVVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNH 221
+ L + +V+ SP NG + + D+T+KLWD + + K+ +
Sbjct: 186 SGQCLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 222 GKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES 279
K F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENII 300
Query: 280 GEEAMQ 285
A++
Sbjct: 301 ASAALE 306
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 24 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 77 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 134
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 135 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 194 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 232
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 126/310 (40%), Gaps = 31/310 (10%)
Query: 1 MAIANDSQQPTTVSKNFPVKPKLKPKPRNLSQTPES---------------KYWSSFK-- 43
M + +PT V N+ +K L + +S S K W ++
Sbjct: 3 MGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
Query: 44 -PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFR 102
I G I+ + +S ++ L +A+ +L ++ + + + + V C +F
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 103 PXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKF 162
P ++++DVK+ L+ L +H+ PV V + D +VS DG+ +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRI 181
Query: 163 WDVAGESVVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVM 217
WD A + L + +V+ SP NG + + D+T+KLWD + + K+
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 218 EVNHGKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRV 275
+ K F +GG +++ + N V IW+L ++V ++ H V S
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPT 296
Query: 276 GNESGEEAMQ 285
N A++
Sbjct: 297 ENIIASAALE 306
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 18 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 71 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 128
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 129 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 188 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 226
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 124/303 (40%), Gaps = 31/303 (10%)
Query: 8 QQPTTVSKNFPVKPKLKPKPRNLSQTPES---------------KYWSSFK---PHQIPG 49
+PT V N+ +K L + +S S K W ++ I G
Sbjct: 4 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXX 109
I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 110 XXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 170 VVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKP 224
+ L + +V+ SP NG + + D+T+KLWD + + K+ + K
Sbjct: 183 CLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 225 IEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282
F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 283 AMQ 285
A++
Sbjct: 298 ALE 300
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 24 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 76
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 77 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 134
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 135 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 194 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 232
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 124/303 (40%), Gaps = 31/303 (10%)
Query: 8 QQPTTVSKNFPVKPKLKPKPRNLSQTPES---------------KYWSSFK---PHQIPG 49
+PT V N+ +K L + +S S K W ++ I G
Sbjct: 10 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 69
Query: 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXX 109
I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 129
Query: 110 XXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 170 VVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKP 224
+ L + +V+ SP NG + + D+T+KLWD + + K+ + K
Sbjct: 189 CLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 225 IEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282
F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 283 AMQ 285
A++
Sbjct: 304 ALE 306
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 19 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 71
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 72 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 129
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 130 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 189 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 227
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 124/303 (40%), Gaps = 31/303 (10%)
Query: 8 QQPTTVSKNFPVKPKLKPKPRNLSQTPES---------------KYWSSFK---PHQIPG 49
+PT V N+ +K L + +S S K W ++ I G
Sbjct: 5 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 64
Query: 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXX 109
I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 124
Query: 110 XXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 170 VVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKP 224
+ L + +V+ SP NG + + D+T+KLWD + + K+ + K
Sbjct: 184 CLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Query: 225 IEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282
F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 298
Query: 283 AMQ 285
A++
Sbjct: 299 ALE 301
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 23 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 75
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 76 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 133
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 134 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 193 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 231
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 124/303 (40%), Gaps = 31/303 (10%)
Query: 8 QQPTTVSKNFPVKPKLKPKPRNLSQTPES---------------KYWSSFK---PHQIPG 49
+PT V N+ +K L + +S S K W ++ I G
Sbjct: 9 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 68
Query: 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXX 109
I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 128
Query: 110 XXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 170 VVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKP 224
+ L + +V+ SP NG + + D+T+KLWD + + K+ + K
Sbjct: 188 CLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 243
Query: 225 IEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282
F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 302
Query: 283 AMQ 285
A++
Sbjct: 303 ALE 305
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 18 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 70
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 71 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 128
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 129 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 188 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 226
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 124/303 (40%), Gaps = 31/303 (10%)
Query: 8 QQPTTVSKNFPVKPKLKPKPRNLSQTPES---------------KYWSSFK---PHQIPG 49
+PT V N+ +K L + +S S K W ++ I G
Sbjct: 4 SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 63
Query: 50 LVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXX 109
I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 123
Query: 110 XXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 170 VVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKP 224
+ L + +V+ SP NG + + D+T+KLWD + + K+ + K
Sbjct: 183 CLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 225 IEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEE 282
F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 283 AMQ 285
A++
Sbjct: 298 ALE 300
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 14 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 66
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 67 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 124
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 125 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 184 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 222
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 124/302 (41%), Gaps = 31/302 (10%)
Query: 9 QPTTVSKNFPVKPKLKPKPRNLSQTPES---------------KYWSSFK---PHQIPGL 50
+PT V N+ +K L + +S S K W ++ I G
Sbjct: 1 KPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 60
Query: 51 VSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXX 110
I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 120
Query: 111 XXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV 170
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 171 VLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKPI 225
+ L + +V+ SP NG + + D+T+KLWD + + K+ + K
Sbjct: 180 LKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC 235
Query: 226 EDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEA 283
F +GG +++ + N V IW+L ++V ++ H V S N A
Sbjct: 236 IFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 284 MQ 285
++
Sbjct: 295 LE 296
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 17 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 70 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 127
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 128 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 187 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 225
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 13/246 (5%)
Query: 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXX 106
I G I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 107 XXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA 166
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTA 178
Query: 167 GESVVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNH 221
+ L + +V+ SP NG + + D+T+KLWD + + K+ +
Sbjct: 179 SGQCLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 234
Query: 222 GKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES 279
K F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENII 293
Query: 280 GEEAMQ 285
A++
Sbjct: 294 ASAALE 299
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 21 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 74 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 131
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 132 ESVRIWDVKTGMCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 191 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 229
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 107/246 (43%), Gaps = 13/246 (5%)
Query: 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXX 106
I G I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 107 XXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA 166
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTA 182
Query: 167 GESVVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNH 221
+ L + +V+ SP NG + + D+T+KLWD + + K+ +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 222 GKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES 279
K F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 280 GEEAMQ 285
A++
Sbjct: 298 ASAALE 303
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 169 SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW---DVRVENSKSVMEVNHGKPI 225
+++ L GH V SP NG+ + S D +K+W D + E + S H I
Sbjct: 17 ALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS----GHKLGI 71
Query: 226 EDVMFLPSGGLIATAGGN-SVKIWDLIGGGKMVYSMESHNKTV 267
DV + L+ +A + ++KIWD + GK + +++ H+ V
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYV 113
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 21 TLAGHTKAVSSVK-------FSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 74 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 131
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 132 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 191 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 229
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 16/259 (6%)
Query: 37 KYWSSFK---PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFK 93
K W ++ I G I+ + +S ++ L +A+ +L ++ + + +
Sbjct: 51 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 94 DVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVS 153
+ V C +F P ++++DVK+ L+ L +H+ PV V + D +VS
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVS 169
Query: 154 GGDDGIVKFWDVAGESVVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV- 208
DG+ + WD A + L + +V+ SP NG + + D+T+KLWD
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYS 225
Query: 209 RVENSKSVMEVNHGKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKT 266
+ + K+ + K F +GG +++ + N V IW+L ++V ++ H
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDV 284
Query: 267 VTSVCVGRVGNESGEEAMQ 285
V S N A++
Sbjct: 285 VISTACHPTENIIASAALE 303
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 21 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 74 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 131
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 132 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 191 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 229
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 16/259 (6%)
Query: 37 KYWSSFK---PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFK 93
K W ++ I G I+ + +S ++ L +A+ +L ++ + + +
Sbjct: 51 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 94 DVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVS 153
+ V C +F P ++++DVK+ L+ L +H+ PV V + D +VS
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVS 169
Query: 154 GGDDGIVKFWDVAGESVVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV- 208
DG+ + WD A + L + +V+ SP NG + + D+T+KLWD
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYS 225
Query: 209 RVENSKSVMEVNHGKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKT 266
+ + K+ + K F +GG +++ + N V IW+L ++V ++ H
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDV 284
Query: 267 VTSVCVGRVGNESGEEAMQ 285
V S N A++
Sbjct: 285 VISTACHPTENIIASAALE 303
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 21 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 74 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 131
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 132 ESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 191 IDDDNPPVSFVKFSPNGK---------YILAATLDNTLKLWDYSKGKC 229
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 16/259 (6%)
Query: 37 KYWSSFK---PHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFK 93
K W ++ I G I+ + +S ++ L +A+ +L ++ + + +
Sbjct: 51 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS 110
Query: 94 DVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVS 153
+ V C +F P ++++DVK+ L+ L +H+ PV V + D +VS
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVS 169
Query: 154 GGDDGIVKFWDVAGESVVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV- 208
DG+ + WD A + L + +V+ SP NG + + D+T+KLWD
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNTLKLWDYS 225
Query: 209 RVENSKSVMEVNHGKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKT 266
+ + K+ + K F +GG +++ + N V IW+L ++V ++ H
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDV 284
Query: 267 VTSVCVGRVGNESGEEAMQ 285
V S N A++
Sbjct: 285 VISTACHPTENIIASAALE 303
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 14/250 (5%)
Query: 8 QQPTTVSKNFPV---KPKLKPKPRNLSQTPESKYWSSFKPHQIPGLVSSINSIVFSPTTS 64
Q P T +K K L P + E Y ++ G + ++ + S +
Sbjct: 23 QTPETATKVVSTSRDKTLLSWGPNPDRHSSECSY--GLPDRRLEGHSAFVSDVALSNNGN 80
Query: 65 HLFAATHSASLTLFSSQTLE-KHSAISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVK 123
+A+ SL L++ Q + ++ + KDV++ + F P ++V++VK
Sbjct: 81 FAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVA-FSPDNRQIVSGGRDNALRVWNVK 139
Query: 124 SRT--PLRRLKSHTRPVRFVKY-PFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDY 180
L R +HT V V++ P LD +VSGG D +VK WD+A +V DL GH +Y
Sbjct: 140 GECMHTLSR-GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNY 198
Query: 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATA 240
V SP +G + + D +LWD + +++ E+ G PI + F P+ + A
Sbjct: 199 VTSVTVSP-DGSLCASSDKDGVARLWD--LTKGEALSEMAAGAPINQICFSPNRYWMCAA 255
Query: 241 GGNSVKIWDL 250
++I+DL
Sbjct: 256 TEKGIRIFDL 265
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 89/213 (41%), Gaps = 15/213 (7%)
Query: 127 PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDC 186
P RRL+ H+ V V VS D ++ W++ GH V
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNF-AVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF 117
Query: 187 SPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS-GGLIATAGG--N 243
SP N V+G D+ +++W+V+ E ++ H + V F PS + +GG N
Sbjct: 118 SPDN-RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDN 176
Query: 244 SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYG 303
VK+WDL G++V ++ H VTSV V G+ S DG +++D
Sbjct: 177 LVKVWDL-ATGRLVTDLKGHTNYVTSVTVSPDGS---------LCASSDKDGVARLWDLT 226
Query: 304 KMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNG 336
K + M AP+ + FSP+ T G
Sbjct: 227 KGEALSEMAAGAPINQICFSPNRYWMCAATEKG 259
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 21/228 (9%)
Query: 82 TLEKHS-AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRF 140
TL H+ A+SS K F P I+++ + + H +
Sbjct: 21 TLAGHTKAVSSVK-------FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 141 VKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYD 200
V + L LVS DD +K WDV+ + L GH +YV C + +P ++ V+GS+D
Sbjct: 74 VAWSSDSNL-LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD 131
Query: 201 HTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSV-KIWDLIGGGKMVYS 259
+V++WDV+ + H P+ V F G LI ++ + + +IWD G +
Sbjct: 132 ESVRIWDVKTGMCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 260 MESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKV 307
++ N V+ V G IL+ LD +K++DY K K
Sbjct: 191 IDDDNPPVSFVKFSPNGK---------YILAATLDNDLKLWDYSKGKC 229
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 106/246 (43%), Gaps = 13/246 (5%)
Query: 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXX 106
I G I+ + +S ++ L +A+ +L ++ + + + + V C +F P
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 107 XXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA 166
++++DVK+ L+ L +H+ PV V + D +VS DG+ + WD A
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTA 182
Query: 167 GESVVLDLFGHKD----YVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNH 221
+ L + +V+ SP NG + + D+ +KLWD + + K+ +
Sbjct: 183 SGQCLKTLIDDDNPPVSFVK---FSP-NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKN 238
Query: 222 GKPIEDVMFLPSGG--LIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNES 279
K F +GG +++ + N V IW+L ++V ++ H V S N
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNMVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENII 297
Query: 280 GEEAMQ 285
A++
Sbjct: 298 ASAALE 303
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 169 SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW---DVRVENSKSVMEVNHGKPI 225
+++ L GH V SP NG+ + S D +K+W D + E + S H I
Sbjct: 17 ALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS----GHKLGI 71
Query: 226 EDVMFLPSGGLIATAGGN-SVKIWDLIGGGKMVYSMESHNKTV 267
DV + L+ +A + ++KIWD + GK + +++ H+ V
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYV 113
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 124/317 (39%), Gaps = 29/317 (9%)
Query: 43 KPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFR 102
+PH ++ FS + + +L +F ++T EK I + +D V C +F
Sbjct: 619 RPH-----TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS 673
Query: 103 PXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPF-LDKLHLVSGGDDGIVK 161
++++D + + H+ V + + L L +G +D +K
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 162 FWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV-- 219
WD+ + +FGH + V SP + ++ + S D T++LWDVR N + + V
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKR 792
Query: 220 ---NHGKPIEDVMFL-------PSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTS 269
+ P EDV + G I A N V ++D+ G + H+ T+
Sbjct: 793 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 852
Query: 270 VCVGRVGNESGEEAMQYRILSVALDGYMKVFDY-GKMKVTHSMRFPAPLMSVAFSPDCMT 328
+ + QY + +D +KV D G + H V FSPD +
Sbjct: 853 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH---------GVMFSPDGSS 903
Query: 329 RVIGTSNGTIFAGRRKK 345
+ + + TI KK
Sbjct: 904 FLTASDDQTIRVWETKK 920
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 124/302 (41%), Gaps = 24/302 (7%)
Query: 40 SSFKPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFK--DVVT 97
S K G +S ++ ++FSP S A+ ++ ++ ++ + K+SAI + DVV
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV- 936
Query: 98 CSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDD 157
F+ +Q+ + +T + P L+ ++ G +D
Sbjct: 937 ---FQENETMVLAVDNIRGLQL--IAGKTGQIDYLPEAQVSCCCLSPHLE--YVAFGDED 989
Query: 158 GIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM 217
G +K ++ V GHK VR + +G ++ S D +++W+ + V
Sbjct: 990 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNW--QTGDYVF 1046
Query: 218 EVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGN 277
H + ++D L L++ + +VK+W++I G++ H TV S +
Sbjct: 1047 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-TGRIERDFTCHQGTVLSCAI----- 1100
Query: 278 ESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNG 336
+A ++ S + D K++ + + H ++ + AFS D + G NG
Sbjct: 1101 --SSDATKFS--STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1156
Query: 337 TI 338
I
Sbjct: 1157 EI 1158
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 109/256 (42%), Gaps = 37/256 (14%)
Query: 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAIS------SFKD-------V 95
G +S+N FSP L + + +L L+ ++ + +I+ S +D +
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 807
Query: 96 VTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKS-HTRPVRFVKYPFLDKLHLVSG 154
V C S+ + +FD+ + L + + H +++ + D L +++
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 866
Query: 155 GDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR--VEN 212
V+ W++ V D GH +V SP +G F+T S D T+++W+ + +N
Sbjct: 867 S-QYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKN 924
Query: 213 SKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGG--GKMVYSMESHNKTVTSV 270
S V+ K DV+F + ++ ++++ LI G G++ Y E+ V+
Sbjct: 925 SAIVL-----KQEIDVVFQENETMVLAV--DNIRGLQLIAGKTGQIDYLPEAQ---VSCC 974
Query: 271 CVG------RVGNESG 280
C+ G+E G
Sbjct: 975 CLSPHLEYVAFGDEDG 990
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D S D K W S + +L GH VRC S ++G + TG + +++W
Sbjct: 1103 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIW 1161
Query: 207 DV---RVENSKSVMEV-----NHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGG 253
+V ++ +S + + V HG + DV F P + +AGG +K W++ G
Sbjct: 1162 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG-YLKWWNVATG 1215
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 17/152 (11%)
Query: 131 LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYV-RCGDCSPV 189
L++H V+ + L L+S DG VK W+V + D H+ V C S
Sbjct: 1047 LQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-- 1102
Query: 190 NGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGN-SVKIW 248
+ F + S D T K+W + + ++ H + F G L+AT N ++IW
Sbjct: 1103 DATKFSSTSADKTAKIWSFDLLSPLHELK-GHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Query: 249 DLIGGGKMVYSM---------ESHNKTVTSVC 271
+ + G++++S +H VT VC
Sbjct: 1162 N-VSDGQLLHSCAPISVEEGTATHGGWVTDVC 1192
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 124/317 (39%), Gaps = 29/317 (9%)
Query: 43 KPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFR 102
+PH ++ FS + + +L +F ++T EK I + +D V C +F
Sbjct: 612 RPH-----TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFS 666
Query: 103 PXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPF-LDKLHLVSGGDDGIVK 161
++++D + + H+ V + + L L +G +D +K
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 162 FWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV-- 219
WD+ + +FGH + V SP + ++ + S D T++LWDVR N + + V
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKR 785
Query: 220 ---NHGKPIEDVMFL-------PSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTS 269
+ P EDV + G I A N V ++D+ G + H+ T+
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845
Query: 270 VCVGRVGNESGEEAMQYRILSVALDGYMKVFDY-GKMKVTHSMRFPAPLMSVAFSPDCMT 328
+ + QY + +D +KV D G + H V FSPD +
Sbjct: 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH---------GVMFSPDGSS 896
Query: 329 RVIGTSNGTIFAGRRKK 345
+ + + TI KK
Sbjct: 897 FLTASDDQTIRVWETKK 913
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/302 (20%), Positives = 124/302 (41%), Gaps = 24/302 (7%)
Query: 40 SSFKPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFK--DVVT 97
S K G +S ++ ++FSP S A+ ++ ++ ++ + K+SAI + DVV
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV- 929
Query: 98 CSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDD 157
F+ +Q+ + +T + P L+ ++ G +D
Sbjct: 930 ---FQENETMVLAVDNIRGLQL--IAGKTGQIDYLPEAQVSCCCLSPHLE--YVAFGDED 982
Query: 158 GIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM 217
G +K ++ V GHK VR + +G ++ S D +++W+ + V
Sbjct: 983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNW--QTGDYVF 1039
Query: 218 EVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGN 277
H + ++D L L++ + +VK+W++I G++ H TV S +
Sbjct: 1040 LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-TGRIERDFTCHQGTVLSCAI----- 1093
Query: 278 ESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNG 336
+A ++ S + D K++ + + H ++ + AFS D + G NG
Sbjct: 1094 --SSDATKFS--STSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149
Query: 337 TI 338
I
Sbjct: 1150 EI 1151
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 109/256 (42%), Gaps = 37/256 (14%)
Query: 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAIS------SFKD-------V 95
G +S+N FSP L + + +L L+ ++ + +I+ S +D +
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800
Query: 96 VTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKS-HTRPVRFVKYPFLDKLHLVSG 154
V C S+ + +FD+ + L + + H +++ + D L +++
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859
Query: 155 GDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR--VEN 212
V+ W++ V D GH +V SP +G F+T S D T+++W+ + +N
Sbjct: 860 S-QYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKN 917
Query: 213 SKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGG--GKMVYSMESHNKTVTSV 270
S V+ K DV+F + ++ ++++ LI G G++ Y E+ V+
Sbjct: 918 SAIVL-----KQEIDVVFQENETMVLAV--DNIRGLQLIAGKTGQIDYLPEAQ---VSCC 967
Query: 271 CVG------RVGNESG 280
C+ G+E G
Sbjct: 968 CLSPHLEYVAFGDEDG 983
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D S D K W S + +L GH VRC S ++G + TG + +++W
Sbjct: 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIW 1154
Query: 207 DV---RVENSKSVMEV-----NHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGG 253
+V ++ +S + + V HG + DV F P + +AGG +K W++ G
Sbjct: 1155 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG-YLKWWNVATG 1208
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 17/152 (11%)
Query: 131 LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYV-RCGDCSPV 189
L++H V+ + L L+S DG VK W+V + D H+ V C S
Sbjct: 1040 LQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-- 1095
Query: 190 NGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGN-SVKIW 248
+ F + S D T K+W + + ++ H + F G L+AT N ++IW
Sbjct: 1096 DATKFSSTSADKTAKIWSFDLLSPLHELK-GHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Query: 249 DLIGGGKMVYSM---------ESHNKTVTSVC 271
+ + G++++S +H VT VC
Sbjct: 1155 N-VSDGQLLHSCAPISVEEGTATHGGWVTDVC 1185
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 9/160 (5%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE---SVVLD 173
++++D+ + RR HT+ V V + LD +VS D +K W+ GE ++
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEG 512
Query: 174 LFGHKDYVRCGDCSPVN-GDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP 232
GH+D+V C SP V+ S+D TVK+W++ +S + H + V P
Sbjct: 513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSP 571
Query: 233 SGGLIATAGGNSVKI-WDLIGGGKMVYSMESHNKTVTSVC 271
G L A+ G + V + WDL GK +YS+E+ N + ++C
Sbjct: 572 DGSLCASGGKDGVVLLWDL-AEGKKLYSLEA-NSVIHALC 609
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 23/216 (10%)
Query: 129 RRLKSHTRPVRFVKYPFL--DKLHLVSGGDDGIVKFWDVAGESVVLDLFGH-KDYVRCGD 185
RRL H+ FV+ L D +SG DG ++ WD+A GH KD +
Sbjct: 424 RRLTGHSH---FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV-- 478
Query: 186 CSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHG--KPIEDVMFLPSG---GLIATA 240
++ V+ S D T+KLW+ E ++ E G + V F P+ +++ +
Sbjct: 479 AFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538
Query: 241 GGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVF 300
+VK+W+L K+ ++ H V++V V G+ S DG + ++
Sbjct: 539 WDKTVKVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGS---------LCASGGKDGVVLLW 588
Query: 301 DYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNG 336
D + K +S+ + + ++ FSP+ T +G
Sbjct: 589 DLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHG 624
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 18/218 (8%)
Query: 131 LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD-----LFGHKDYVRCGD 185
+++HT V + P + +VS D + W + + L GH +V
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 186 CSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMF-LPSGGLIATAGGNS 244
S +G ++GS+D ++LWD+ S V H K + V F L + +++ + +
Sbjct: 438 LSS-DGQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 245 VKIWDLIGGGKMVYSM--ESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302
+K+W+ +G K S E H V+ CV N +Q I+S + D +KV++
Sbjct: 496 IKLWNTLGECKYTISEGGEGHRDWVS--CVRFSPN-----TLQPTIVSASWDKTVKVWNL 548
Query: 303 GKMKVTHSMRFPAPLMS-VAFSPDCMTRVIGTSNGTIF 339
K+ ++ +S VA SPD G +G +
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 129/298 (43%), Gaps = 29/298 (9%)
Query: 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSS-----QTLEKHSAISSFKDVVTCSSF 101
+ G SS+N + F P + +A+ ++ L++ QTL HS+ V +F
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS------SVWGVAF 311
Query: 102 RPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVK 161
P +++++ ++ L+ L H+ V V + D + S DD VK
Sbjct: 312 SPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVK 369
Query: 162 FWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNH 221
W+ G+ ++ L GH VR SP +G + S D TVKLW+ + +++ H
Sbjct: 370 LWNRNGQ-LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL--TGH 425
Query: 222 GKPIEDVMFLPSGGLIATAGGN-SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESG 280
+ V F P IA+A + +VK+W+ G+++ ++ H+ +V V G
Sbjct: 426 SSSVWGVAFSPDDQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQT-- 481
Query: 281 EEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTI 338
I S + D +K+++ + + + VAFSPD T + + T+
Sbjct: 482 -------IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 127/293 (43%), Gaps = 29/293 (9%)
Query: 52 SSINSIVFSPTTSHLFAATHSASLTLFSS-----QTLEKHSAISSFKDVVTCSSFRPXXX 106
SS+ + FSP + +A+ ++ L++ QTL HS+ V +F P
Sbjct: 17 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS------SVWGVAFSPDGQ 70
Query: 107 XXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA 166
+++++ ++ L+ L H+ VR V + D + S DD VK W+
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRN 128
Query: 167 GESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIE 226
G+ ++ L GH V SP +G + S D TVKLW+ + +++ H +
Sbjct: 129 GQ-LLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVW 184
Query: 227 DVMFLPSGGLIATAGGN-SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQ 285
V F P G IA+A + +VK+W+ G+++ ++ H+ +V V G
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQT------- 235
Query: 286 YRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTI 338
I S + D +K+++ + + + VAF PD T + + T+
Sbjct: 236 --IASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 29/298 (9%)
Query: 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSS-----QTLEKHSAISSFKDVVTCSSF 101
+ G SS+ + FSP + +A+ ++ L++ QTL HS+ V +F
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS------SVWGVAF 188
Query: 102 RPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVK 161
P +++++ ++ L+ L H+ VR V + D + S DD VK
Sbjct: 189 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVK 246
Query: 162 FWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNH 221
W+ G+ ++ L GH V P +G + S D TVKLW+ + +++ H
Sbjct: 247 LWNRNGQ-LLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTL--TGH 302
Query: 222 GKPIEDVMFLPSGGLIATAGGN-SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESG 280
+ V F P G IA+A + +VK+W+ G+ + ++ H+ +V V G
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQHLQTLTGHSSSVWGVAFSPDGQT-- 358
Query: 281 EEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTI 338
I S + D +K+++ + + + VAFSPD T + + T+
Sbjct: 359 -------IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 409
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 15/166 (9%)
Query: 47 IPGLVSSINSIVFSPTTSHLFAATHSASLTLFSS-----QTLEKHSAISSFKDVVTCSSF 101
+ G SS+ + FSP + +A+ ++ L++ QTL HS SS + V +F
Sbjct: 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS--SSVRGV----AF 475
Query: 102 RPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVK 161
P +++++ ++ L+ L H+ VR V + D + S DD VK
Sbjct: 476 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVK 533
Query: 162 FWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207
W+ G+ ++ L GH V SP +G + S D TVKLW+
Sbjct: 534 LWNRNGQ-LLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 15/166 (9%)
Query: 174 LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS 233
L H VR SP +G + S D TVKLW+ + +++ H + V F P
Sbjct: 12 LEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPD 68
Query: 234 GGLIATAGGN-SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVA 292
G IA+A + +VK+W+ G+++ ++ H+ +V V G I S +
Sbjct: 69 GQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQT---------IASAS 117
Query: 293 LDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTI 338
D +K+++ + + + VAFSPD T + + T+
Sbjct: 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 120/297 (40%), Gaps = 38/297 (12%)
Query: 30 LSQTPESKYWSSFKP--HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHS 87
L Q + K W P + + G S + ++F P S + +A+ A++ ++ +T +
Sbjct: 85 LGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER 144
Query: 88 AISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVK-YPFL 146
+ D V SF I+++D + +R + H V V P
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D H+VS D +K W+V V GH+++VR + +G + + S D TV++W
Sbjct: 205 D--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVW 261
Query: 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGL--IATAGGN-------------------SV 245
V + K+ + H +E + + P I+ A G+ ++
Sbjct: 262 VVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320
Query: 246 KIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302
K+WD + G + ++ H+ V V G ILS A D ++V+DY
Sbjct: 321 KMWD-VSTGMCLMTLVGHDNWVRGVLFHSGGK---------FILSCADDKTLRVWDY 367
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 151 LVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210
L+SG D +K WDV+ ++ L GH ++VR G G ++ + D T+++WD +
Sbjct: 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR-GVLFHSGGKFILSCADDKTLRVWDYK- 368
Query: 211 ENSKSVMEVN-HGKPIEDVMFLPSGGLIATAG-GNSVKIWD 249
N + + +N H + + F + + T +VK+W+
Sbjct: 369 -NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
I+++DV + L L H VR V + K ++S DD ++ WD + + L
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR 209
H+ +V D VTGS D TVK+W+ R
Sbjct: 379 HEHFVTSLDFHKT-APYVVTGSVDQTVKVWECR 410
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 27/194 (13%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
++V+D ++ T L L+ HT V +++ D +H+VSG D ++ WDV + + L G
Sbjct: 261 VKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317
Query: 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVME--VNHGKPIEDVMFLPSG 234
H+ + ++ V+G+ D TVK+WD++ ++ H + + F
Sbjct: 318 HQSLT---SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKN 373
Query: 235 GLIATAGGNSVKIWDLI--------------GGGKMVYSMESHNKTVTSVCVGRVGNESG 280
+I ++ +VK+WDL G G +V+ + + N + VC VG+ +G
Sbjct: 374 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL--VCA--VGSRNG 429
Query: 281 EEAMQYRILSVALD 294
E + +L +D
Sbjct: 430 TEETKLLVLDFDVD 443
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 24/200 (12%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
++V++ ++ + L HT VR + L + +VSG D ++ WD+ + L G
Sbjct: 181 LKVWNAETGECIHTLYGHTSTVRCMH---LHEKRVVSGSRDATLRVWDIETGQCLHVLMG 237
Query: 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGL 236
H VR C +G V+G+YD VK+WD E ++ H + + F G+
Sbjct: 238 HVAAVR---CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF---DGI 290
Query: 237 IATAGG--NSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALD 294
+G S+++WD + G ++++ H SG E ++S D
Sbjct: 291 HVVSGSLDTSIRVWD-VETGNCIHTLTGHQSLT-----------SGMELKDNILVSGNAD 338
Query: 295 GYMKVFDYGKMKVTHSMRFP 314
+K++D + +++ P
Sbjct: 339 STVKIWDIKTGQCLQTLQGP 358
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 20/203 (9%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
++V+ + LR L HT V D + ++SG D +K W+ + L+G
Sbjct: 141 LKVWSAVTGKCLRTLVGHTGGVW--SSQMRDNI-IISGSTDRTLKVWNAETGECIHTLYG 197
Query: 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGL 236
H VR C ++ V+GS D T+++WD+ V+ + H + V + +
Sbjct: 198 HTSTVR---CMHLHEKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY-DGRRV 252
Query: 237 IATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGY 296
++ A VK+WD +++++ H V S+ + ++S +LD
Sbjct: 253 VSGAYDFMVKVWD-PETETCLHTLQGHTNRVYSL-----------QFDGIHVVSGSLDTS 300
Query: 297 MKVFDYGKMKVTHSMRFPAPLMS 319
++V+D H++ L S
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTS 323
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 17/162 (10%)
Query: 151 LVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210
+VSG DD +K W + L GH V S + ++ ++GS D T+K+W+
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW---SSQMRDNIIISGSTDRTLKVWN--A 186
Query: 211 ENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSV 270
E + + + M L +++ + ++++WD I G+ ++ + H V
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD-IETGQCLHVLMGHVAAVR-- 243
Query: 271 CVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR 312
CV G R++S A D +KV+D H+++
Sbjct: 244 CVQYDGR---------RVVSGAYDFMVKVWDPETETCLHTLQ 276
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 16/138 (11%)
Query: 174 LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS 233
L GH D+V C G+ V+GS D+T+K+W + + G M
Sbjct: 114 LKGHDDHVI--TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RD 169
Query: 234 GGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL 293
+I+ + ++K+W+ G+ ++++ H TV + + R++S +
Sbjct: 170 NIIISGSTDRTLKVWN-AETGECIHTLYGHTSTVRCM-----------HLHEKRVVSGSR 217
Query: 294 DGYMKVFDYGKMKVTHSM 311
D ++V+D + H +
Sbjct: 218 DATLRVWDIETGQCLHVL 235
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 123/322 (38%), Gaps = 38/322 (11%)
Query: 51 VSSINSIVFSPTTSHLFAATHSA------------SLTLFSSQTLEKHSAISSFKDVVTC 98
+++++ +V P T ++ A S +L +F ++T EK I + +D V C
Sbjct: 609 ITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLC 668
Query: 99 SSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDK-LHLVSGGDD 157
+F +++++ + + H+ V + L L +G D
Sbjct: 669 CAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSD 728
Query: 158 GIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVM 217
+K WD+ + +FGH + V SP + + + S D T+KLWD N + +
Sbjct: 729 CFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWDATSANERKSI 787
Query: 218 EV-----NHGKPIEDVMFL-------PSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNK 265
V N P ED+ + G I A N + ++D+ G + H+
Sbjct: 788 NVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHS 847
Query: 266 TVTSVCVGRVGNESGEEAM-QYRILSVALDGYMKVFDY-GKMKVTHSMRFPAPLMSVAFS 323
T+ C N A+ QY + D KV D G + H V FS
Sbjct: 848 TI-QYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVH---------GVMFS 897
Query: 324 PDCMTRVIGTSNGTIFAGRRKK 345
PD + + + + TI KK
Sbjct: 898 PDGSSFLTSSDDQTIRLWETKK 919
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/291 (18%), Positives = 121/291 (41%), Gaps = 20/291 (6%)
Query: 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXX 108
G +S ++ ++FSP S ++ ++ L+ ++ + K+SA+ ++V F+
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDV--VFQENEVMV 943
Query: 109 XXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGE 168
+Q+ + RT + + P L ++ G ++G ++ ++
Sbjct: 944 LAVDHIRRLQL--INGRTGQIDYLTEAQVSCCCLSPHLQ--YIAFGDENGAIEILELVNN 999
Query: 169 SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDV 228
+ F HK V + + ++ S D +++W+ +++ K + H + ++D
Sbjct: 1000 RIFQSRFQHKKTVWHIQFTA-DEKTLISSSDDAEIQVWNWQLD--KCIFLRGHQETVKDF 1056
Query: 229 MFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRI 288
L + L++ + +VK+W++I G K H TV S + +A ++
Sbjct: 1057 RLLKNSRLLSWSFDGTVKVWNIITGNKE-KDFVCHQGTVLSC-------DISHDATKFS- 1107
Query: 289 LSVALDGYMKVFDYGKMKVTHSMR-FPAPLMSVAFSPDCMTRVIGTSNGTI 338
S + D K++ + + H +R + AFS D G NG I
Sbjct: 1108 -STSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEI 1157
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 109/256 (42%), Gaps = 37/256 (14%)
Query: 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAIS------SFKD-------V 95
G +S+N FSP L + + +L L+ + + + +I+ + +D +
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVI 806
Query: 96 VTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKS-HTRPVRFVKYPFLDKLHLVSG 154
V C S+ I +FD+ + L + + H +++ + + L +V+
Sbjct: 807 VKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVAL 865
Query: 155 GDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR--VEN 212
V+ W+ S V D GH +V SP +G F+T S D T++LW+ + +N
Sbjct: 866 SQ-YCVELWNTDSRSKVADCRGHLSWVHGVMFSP-DGSSFLTSSDDQTIRLWETKKVCKN 923
Query: 213 SKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGG--GKMVYSMESHNKTVTSV 270
S ++ K DV+F + ++ + ++ LI G G++ Y E+ V+
Sbjct: 924 SAVML-----KQEVDVVFQENEVMVLAV--DHIRRLQLINGRTGQIDYLTEAQ---VSCC 973
Query: 271 CVG------RVGNESG 280
C+ G+E+G
Sbjct: 974 CLSPHLQYIAFGDENG 989
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 9/114 (7%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D S D K W + +L GH VRC S V+ + TG + +++W
Sbjct: 1102 DATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNGEIRIW 1160
Query: 207 DVR----VENSKSVME---VNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGG 253
+V + + E HG + D+ F P G ++ +AGG +K W+++ G
Sbjct: 1161 NVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG-YIKWWNVVTG 1213
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D L +G +D +++ WD+ +V+ L GH+ + D P +GD V+GS D TV++W
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIW 192
Query: 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG--NSVKIWDLIGGGKMVYSMESHN 264
D+R + + G + V P G AG +V++WD G +V ++S N
Sbjct: 193 DLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWD-SETGFLVERLDSEN 249
Query: 265 KTVT 268
++ T
Sbjct: 250 ESGT 253
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 180 YVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-HGKPIEDVMFLPSGG-LI 237
Y+R SP +G TG+ D +++WD +EN K VM + H + I + + PSG L+
Sbjct: 125 YIRSVCFSP-DGKFLATGAEDRLIRIWD--IENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 238 ATAGGNSVKIWDL-IGGGKMVYSMESHNKTVT 268
+ +G +V+IWDL G + S+E TV
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA 213
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 32/182 (17%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDL-------FGHKDYVRCGDCSPV---NGDMFVT 196
D ++ +G D V+ WD +V L GHKD V S V +G V+
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY----SVVFTRDGQSVVS 273
Query: 197 GSYDHTVKLWDVRVENSKS-----------VMEVNHGKPIEDVMFLPSGGLIATAGGN-S 244
GS D +VKLW+++ N+KS V + H + V + I + +
Sbjct: 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333
Query: 245 VKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL-DGYMKVFDYG 303
V WD G ++ ++ H +V SV V G+ G E Y + + D +++ Y
Sbjct: 334 VLFWDKKSGNPLLM-LQGHRNSVISVAVAN-GSSLGPE---YNVFATGSGDCKARIWKYK 388
Query: 304 KM 305
K+
Sbjct: 389 KI 390
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 20/241 (8%)
Query: 41 SFKP------HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKD 94
SF P + G + S+ ++P + + +A+ L ++++ T +K AI
Sbjct: 50 SFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP 109
Query: 95 VVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRT------PLRR-LKSHTRPVRFVKYPFLD 147
V +F P +F++ S+ P+ R L H +Y
Sbjct: 110 WVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ 169
Query: 148 KLHLVSGGDDGIVKFWDVA-GE--SVVLDLF--GHKDYVRCGDCSPVNGDMFVTGSYDHT 202
+ L++G D WDV G+ S+ F GH V + +N +MF++GS D T
Sbjct: 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT 229
Query: 203 VKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGN-SVKIWDLIGGGKM-VYSM 260
V+LWD+R+ + H I V F P G T + + +++D+ G ++ VY+
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289
Query: 261 E 261
E
Sbjct: 290 E 290
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 132 KSHTRPVRFVKY-PFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVN 190
+SH+ V V++ P +VS G D +VK W++A + + GH Y+ SP +
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-D 203
Query: 191 GDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250
G + +G D LWD+ K + ++ G I + F P+ + A G S+KIWDL
Sbjct: 204 GSLCASGGKDGQAMLWDL--NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDL 261
Query: 251 IG 252
G
Sbjct: 262 EG 263
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 17/203 (8%)
Query: 127 PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH-KDYVRCGD 185
P R L+ H+ V V D +SG DG ++ WD+ + GH KD +
Sbjct: 55 PQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Query: 186 CSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP--SGGLIATAGGN 243
S + V+GS D T+KLW+ +V + +H + + V F P S +I + G +
Sbjct: 114 SS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 171
Query: 244 S-VKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302
VK+W+L K+ + H + +V V G+ S DG ++D
Sbjct: 172 KLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGSLCA---------SGGKDGQAMLWDL 221
Query: 303 GKMKVTHSMRFPAPLMSVAFSPD 325
+ K +++ + ++ FSP+
Sbjct: 222 NEGKHLYTLDGGDIINALCFSPN 244
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 55/200 (27%)
Query: 174 LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKP--------- 224
L GH +V +P DM ++ S D T+ +W + + E N+G P
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD------ETNYGIPQRALRGHSH 64
Query: 225 -IEDVMFLPSGGLIATAGG--NSVKIWDL---------IGGGKMVYSM--ESHNKTVTS- 269
+ DV+ + S G A +G ++++WDL +G K V S+ S N+ + S
Sbjct: 65 FVSDVV-ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 123
Query: 270 -------------VCVGRVGNESGEEAMQYR----------ILSVALDGYMKVFDYGKMK 306
VC V +ES E + I+S D +KV++ K
Sbjct: 124 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 183
Query: 307 V-THSMRFPAPLMSVAFSPD 325
+ T+ + L +V SPD
Sbjct: 184 LKTNHIGHTGYLNTVTVSPD 203
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 132 KSHTRPVRFVKY-PFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVN 190
+SH+ V V++ P +VS G D +VK W++A + + GH Y+ SP +
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-D 226
Query: 191 GDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250
G + +G D LWD+ K + ++ G I + F P+ + A G S+KIWDL
Sbjct: 227 GSLCASGGKDGQAMLWDL--NEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDL 284
Query: 251 IG 252
G
Sbjct: 285 EG 286
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 17/203 (8%)
Query: 127 PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH-KDYVRCGD 185
P R L+ H+ V V D +SG DG ++ WD+ + GH KD +
Sbjct: 78 PQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136
Query: 186 CSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP--SGGLIATAGGN 243
S + V+GS D T+KLW+ +V + +H + + V F P S +I + G +
Sbjct: 137 SS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194
Query: 244 S-VKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDY 302
VK+W+L K+ + H + +V V G+ S DG ++D
Sbjct: 195 KLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPDGSLCA---------SGGKDGQAMLWDL 244
Query: 303 GKMKVTHSMRFPAPLMSVAFSPD 325
+ K +++ + ++ FSP+
Sbjct: 245 NEGKHLYTLDGGDIINALCFSPN 267
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 55/200 (27%)
Query: 174 LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKP--------- 224
L GH +V +P DM ++ S D T+ +W + + E N+G P
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD------ETNYGIPQRALRGHSH 87
Query: 225 -IEDVMFLPSGGLIATAGG--NSVKIWDL---------IGGGKMVYSM--ESHNKTVTS- 269
+ DV+ + S G A +G ++++WDL +G K V S+ S N+ + S
Sbjct: 88 FVSDVV-ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSG 146
Query: 270 -------------VCVGRVGNESGEEAMQYR----------ILSVALDGYMKVFDYGKMK 306
VC V +ES E + I+S D +KV++ K
Sbjct: 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK 206
Query: 307 V-THSMRFPAPLMSVAFSPD 325
+ T+ + L +V SPD
Sbjct: 207 LKTNHIGHTGYLNTVTVSPD 226
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 107/263 (40%), Gaps = 17/263 (6%)
Query: 54 INSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXX 113
+ I F PT + +S + L++ +T + +I + V F
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 114 XXXIQVFDVKSRTPLRRLKSHTRPVRFVK-YPFLDKLHLVSGGDDGIVKFWDVAGESVVL 172
I+VF+ + + ++H +R + +P K +++SG DD VK W+ +
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 173 DLF-GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMF- 230
F GH+ +V C +P + F +G D TVK+W + + + + V +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 231 -LPSGGLIATAGGN-SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRI 288
LP + TA + ++KIWD V ++E H V+ I
Sbjct: 194 PLPDKPYMITASDDLTIKIWDY-QTKSCVATLEGHMSNVSFAVF---------HPTLPII 243
Query: 289 LSVALDGYMKVFDYGKMKVTHSM 311
+S + DG +K+++ KV ++
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTL 266
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 33/293 (11%)
Query: 83 LEKHSAISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVK 142
L+ S+ D V F P +++++ +++ +R ++ PVR K
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 143 YPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHT 202
+ K ++ G DD ++ ++ V+D H DY+R P ++GS D T
Sbjct: 63 F-IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLT 120
Query: 203 VKLWDVRVENSKSVMEV--NHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVY 258
VKLW+ EN+ ++ + H + V F P +G +VK+W L
Sbjct: 121 VKLWN--WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-------- 170
Query: 259 SMESHNKTVTSVCVGRVGNESGEEAMQY-------RILSVALDGYMKVFDYGKMKVTHSM 311
+ N T+T+ G E G + Y +++ + D +K++DY ++
Sbjct: 171 GQSTPNFTLTT------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 312 RFPAPLMSVA-FSPDCMTRVIGTSNGTI---FAGRRKKKENVESGIENFWSLG 360
+S A F P + G+ +GT+ + K ++ + G+E W +
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 107/263 (40%), Gaps = 17/263 (6%)
Query: 54 INSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXX 113
+ I F PT + +S + L++ +T + +I + V F
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 114 XXXIQVFDVKSRTPLRRLKSHTRPVRFVK-YPFLDKLHLVSGGDDGIVKFWDVAGESVVL 172
I+VF+ + + ++H +R + +P K +++SG DD VK W+ +
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 173 DLF-GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMF- 230
F GH+ +V C +P + F +G D TVK+W + + + + V +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 231 -LPSGGLIATAGGN-SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRI 288
LP + TA + ++KIWD V ++E H V+ I
Sbjct: 194 PLPDKPYMITASDDLTIKIWDY-QTKSCVATLEGHMSNVSFAVF---------HPTLPII 243
Query: 289 LSVALDGYMKVFDYGKMKVTHSM 311
+S + DG +K+++ KV ++
Sbjct: 244 ISGSEDGTLKIWNSSTYKVEKTL 266
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 33/293 (11%)
Query: 83 LEKHSAISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVK 142
L+ S+ D V F P +++++ +++ +R ++ PVR K
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 143 YPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHT 202
+ K ++ G DD ++ ++ V+D H DY+R P ++GS D T
Sbjct: 63 F-IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLT 120
Query: 203 VKLWDVRVENSKSVMEV--NHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVY 258
VKLW+ EN+ ++ + H + V F P +G +VK+W L
Sbjct: 121 VKLWN--WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-------- 170
Query: 259 SMESHNKTVTSVCVGRVGNESGEEAMQY-------RILSVALDGYMKVFDYGKMKVTHSM 311
+ N T+T+ G E G + Y +++ + D +K++DY ++
Sbjct: 171 GQSTPNFTLTT------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 312 RFPAPLMSVA-FSPDCMTRVIGTSNGTI---FAGRRKKKENVESGIENFWSLG 360
+S A F P + G+ +GT+ + K ++ + G+E W +
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 56 SIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXXXX 115
++ FSP + +L TH + +F ++ +K ++ + + ++ P
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 116 XIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLF 175
I +FD+ + L L+ H P+R + + +L LV+ DDG +K +DV ++ L
Sbjct: 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHANLAGTLS 245
Query: 176 GHKDYV 181
GH +V
Sbjct: 246 GHASWV 251
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 57/204 (27%)
Query: 181 VRCGDCSPVNGDMFVTGSYDHTVKLW---DVRVENSKSV---------MEVNHGKPIEDV 228
V G N + VTGS D VK+W D R++ S+ ++++H PI
Sbjct: 38 VAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIA-- 95
Query: 229 MFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMES-------------HNKTVTSVCVGRV 275
S L A +++WDL GK + S+++ T VG+V
Sbjct: 96 ---ASSSLDA-----HIRLWDL-ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKV 146
Query: 276 ---GNESG--EEAMQYR---ILSV------------ALDGYMKVFDYGKMKVTHSMRFPA 315
G ESG E ++ R ILS+ A+DG + +FD K+ H++ A
Sbjct: 147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 316 -PLMSVAFSPDCMTRVIGTSNGTI 338
P+ S+ FSPD V + +G I
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYI 230
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 45 HQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPX 104
H + G I S+ FSP + L A+ + ++ Q +S V +F P
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259
Query: 105 XXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWD 164
++V+DV +RT + H V VKY + +VS GDD + +D
Sbjct: 260 DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYD 318
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 4/158 (2%)
Query: 54 INSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXX 113
I SI +SP +L + + +F T + + + +F P
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 114 XXXIQVFDVKSRTPLRRLKSHTRPVRFVKY-PFLDKLHLVSGGDDGIVKFWDVAGESVVL 172
I+++DV+ L H V V + P D H VS D VK WDV + V
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCP--DDTHFVSSSSDKSVKVWDVGTRTCVH 284
Query: 173 DLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210
F H+D V G NG V+ D + ++D +
Sbjct: 285 TFFDHQDQV-WGVKYNGNGSKIVSVGDDQEIHIYDCPI 321
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 117 IQVFDVKSRT--PLRR-LKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173
I V+D+ S T LRR L H V V + D ++VS D +K W+ + V
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRT 291
Query: 174 LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS 233
L GHK R C + V+GS D+T++LWD+ V+E H + + + F +
Sbjct: 292 LNGHK---RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF-DN 346
Query: 234 GGLIATAGGNSVKIWDLIGG 253
+++ A +K+WDL+
Sbjct: 347 KRIVSGAYDGKIKVWDLVAA 366
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 95/220 (43%), Gaps = 47/220 (21%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
I+++D + R L HT V ++Y D+ +++G D V+ WDV ++ L
Sbjct: 155 IKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIH 211
Query: 177 HKDYVRCGDCSPV-----NGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHG-KPIEDVMF 230
H C V N M VT S D ++ +WD+ ++ V G + +V+
Sbjct: 212 H--------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263
Query: 231 LPSGGLIATAGGNSVKIWD---------LIGGGKMVYSMESHNKTVTS------------ 269
+++ +G ++K+W+ L G + + ++ ++ V S
Sbjct: 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323
Query: 270 ---VCVGRV--GNESGEEAMQY---RILSVALDGYMKVFD 301
C+ RV G+E +++ RI+S A DG +KV+D
Sbjct: 324 ECGACL-RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 362
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 36/208 (17%)
Query: 125 RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCG 184
R L+R+ + + V D +VSG D +K WD L GH V C
Sbjct: 120 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC- 178
Query: 185 DCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNS 244
+ + +TGS D TV++WDV + + ++H + + + F +G ++ + S
Sbjct: 179 --LQYDERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRF-NNGMMVTCSKDRS 234
Query: 245 VKIWD------------LIGGGKMVYSMESHNKTVTSVCVGRV----------------G 276
+ +WD L+G V ++ +K + S R G
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294
Query: 277 NESGEEAMQYR---ILSVALDGYMKVFD 301
++ G +QYR ++S + D ++++D
Sbjct: 295 HKRGIACLQYRDRLVVSGSSDNTIRLWD 322
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 75/170 (44%), Gaps = 23/170 (13%)
Query: 49 GLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXX 108
G +++N + F ++ +A+ ++ ++++ T E ++ K + C +R
Sbjct: 254 GHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVS 311
Query: 109 XXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDV--- 165
I+++D++ LR L+ H VR +++ D +VSG DG +K WD+
Sbjct: 312 GSSDNT--IRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAA 366
Query: 166 ------AGESVVLDLFGHKDYVRCGDCSPVNGDMF--VTGSYDHTVKLWD 207
AG + L H G + D F V+ S+D T+ +WD
Sbjct: 367 LDPRAPAGTLCLRTLVEHS-----GRVFRLQFDEFQIVSSSHDDTILIWD 411
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 21/223 (9%)
Query: 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDY 180
D K P+R K H+ V+ D + +S D ++ WDVA GHK
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLT-ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109
Query: 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-------S 233
V D M ++GS D T+K+W ++ + +++ H + V +P S
Sbjct: 110 VMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDS 166
Query: 234 GGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL 293
+I+ VK W+L ++ HN + ++ G I S
Sbjct: 167 VTIISAGNDKMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGT---------LIASAGK 216
Query: 294 DGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNG 336
DG + +++ K +++ + S+AFSP+ T+ G
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG 259
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D + ++S G+D +VK W++ + D GH + SP +G + + D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250
++ + K++ ++ + + F P+ +A A +K++ L
Sbjct: 224 NLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 21/223 (9%)
Query: 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDY 180
D K P+R K H+ V+ D + +S D ++ WDVA GHK
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLT-ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109
Query: 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-------S 233
V D M ++GS D T+K+W ++ + +++ H + V +P S
Sbjct: 110 VMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDS 166
Query: 234 GGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL 293
+I+ VK W+L ++ HN + ++ G I S
Sbjct: 167 VTIISAGNDKMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGT---------LIASAGK 216
Query: 294 DGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNG 336
DG + +++ K +++ + S+AFSP+ T+ G
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG 259
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D + ++S G+D +VK W++ + D GH + SP +G + + D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250
++ + K++ ++ + + F P+ +A A +K++ L
Sbjct: 224 NLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 21/223 (9%)
Query: 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDY 180
D K P+R K H+ V+ D + +S D ++ WDVA GHK
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLT-ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109
Query: 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-------S 233
V D M ++GS D T+K+W ++ + +++ H + V +P S
Sbjct: 110 VMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDS 166
Query: 234 GGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL 293
+I+ VK W+L ++ HN + ++ G I S
Sbjct: 167 VTIISAGNDKMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGT---------LIASAGK 216
Query: 294 DGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNG 336
DG + +++ K +++ + S+AFSP+ T+ G
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG 259
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D + ++S G+D +VK W++ + D GH + SP +G + + D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250
++ + K++ ++ + + F P+ +A A +K++ L
Sbjct: 224 NLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 21/223 (9%)
Query: 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDY 180
D K P+R K H+ V+ D + +S D ++ WDVA GHK
Sbjct: 45 DQKFGVPVRSFKGHSHIVQDCTLT-ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 103
Query: 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-------S 233
V D M ++GS D T+K+W ++ + +++ H + V +P S
Sbjct: 104 VMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDS 160
Query: 234 GGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL 293
+I+ VK W+L ++ HN + ++ G I S
Sbjct: 161 VTIISAGNDKMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGT---------LIASAGK 210
Query: 294 DGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNG 336
DG + +++ K +++ + S+AFSP+ T+ G
Sbjct: 211 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG 253
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D + ++S G+D +VK W++ + D GH + SP +G + + D + LW
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 217
Query: 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250
++ + K++ ++ + + F P+ +A A +K++ L
Sbjct: 218 NLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 259
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 54 INSIVFSPTTSHLFAATHSASLTLFS-------SQTLEKHSAISSFKDVVTCSSFRPXX- 105
I SI PT ++ + + ++ L++ QT E H + V C +F P
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH------EHFVMCVAFNPKDP 153
Query: 106 XXXXXXXXXXXIQVFDVKSRTPLRRLKS-HTRPVRFVKY-PFLDKLHLVSGGDDGIVKFW 163
++V+ + TP L + R V +V Y P DK ++++ DD +K W
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 164 DVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207
D +S V L GH V P + ++GS D T+K+W+
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 33/293 (11%)
Query: 83 LEKHSAISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVK 142
L+ S+ D V F P +++++ +++ +R ++ PVR K
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 143 YPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHT 202
+ K ++ G DD ++ ++ V+D H DY+R P ++GS D T
Sbjct: 63 F-IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLT 120
Query: 203 VKLWDVRVENSKSVMEVNHGKP--IEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVY 258
VKLW+ EN+ ++ + G + V F P +G +VK+W L
Sbjct: 121 VKLWN--WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-------- 170
Query: 259 SMESHNKTVTSVCVGRVGNESGEEAMQY-------RILSVALDGYMKVFDYGKMKVTHSM 311
+ N T+T+ G E G + Y +++ + D +K++DY ++
Sbjct: 171 GQSTPNFTLTT------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 312 RFPAPLMSVA-FSPDCMTRVIGTSNGTI---FAGRRKKKENVESGIENFWSLG 360
+S A F P + G+ +GT+ + K ++ + G+E W +
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 21/223 (9%)
Query: 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDY 180
D K P+R K H+ V+ D + +S D ++ WDVA GHK
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLT-ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109
Query: 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-------S 233
V D M ++GS D T+K+W ++ + +++ H + V +P S
Sbjct: 110 VMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDS 166
Query: 234 GGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL 293
+I+ VK W+L ++ HN + ++ G I S
Sbjct: 167 VTIISAGNDKMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGT---------LIASAGK 216
Query: 294 DGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNG 336
DG + +++ K +++ + S+AFSP+ T+ G
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG 259
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D + ++S G+D +VK W++ + D GH + SP +G + + D + LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLW 223
Query: 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250
++ + K++ ++ + + F P+ +A A +K++ L
Sbjct: 224 NLAAK--KAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 24/226 (10%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDV-AGESVVLDLF 175
+ ++DV+S+T LR + H V + + ++ L SG G + DV + L
Sbjct: 158 VDIYDVESQTKLRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214
Query: 176 GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-SG 234
GH V CG +G +G D+ V++WD R K + NH ++ V + P
Sbjct: 215 GHSSEV-CGLAWRSDGLQLASGGNDNVVQIWDARSSIPK-FTKTNHNAAVKAVAWCPWQS 272
Query: 235 GLIATAGGN---SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSV 291
L+AT GG + W+ G + V ++++ ++ VTS+ + + +E M
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGAR-VNTVDAGSQ-VTSL----IWSPHSKEIMSTHGFP- 325
Query: 292 ALDGYMKVFDYGKMKVTHSMRFPAP---LMSVAFSPDCMTRVIGTS 334
D + ++ Y +T + PA ++ A SPD R++ T+
Sbjct: 326 --DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG--RILSTA 367
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D L G +G+V +DV ++ + + GH+ R G C N + +GS +
Sbjct: 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ--ARVG-CLSWNRHVLSSGSRSGAIHHH 201
Query: 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG-NSVKIWDLIGGGKMVYSMESHNK 265
DVR+ N + H + + + G +A+ G N V+IWD ++ +HN
Sbjct: 202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK-FTKTNHNA 260
Query: 266 TVTSVC 271
V +V
Sbjct: 261 AVKAVA 266
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 21/223 (9%)
Query: 121 DVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDY 180
D K P+R K H+ V+ D + +S D ++ WDVA GHK
Sbjct: 51 DQKFGVPVRSFKGHSHIVQDCTLT-ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD 109
Query: 181 VRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLP-------S 233
V D ++GS D T+K+W ++ + +++ H + V +P S
Sbjct: 110 VXSVDIDK-KASXIISGSRDKTIKVWTIKGQCLATLL--GHNDWVSQVRVVPNEKADDDS 166
Query: 234 GGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVAL 293
+I+ VK W+L ++ HN + ++ G I S
Sbjct: 167 VTIISAGNDKXVKAWNL-NQFQIEADFIGHNSNINTLTASPDGT---------LIASAGK 216
Query: 294 DGYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNG 336
DG + +++ K +++ + S+AFSP+ T+ G
Sbjct: 217 DGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATG 259
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 147 DKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
D + ++S G+D VK W++ + D GH + SP +G + + D + LW
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIXLW 223
Query: 207 DVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250
++ + K+ ++ + + F P+ +A A +K++ L
Sbjct: 224 NLAAK--KAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSL 265
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPV-NGD 192
HT + + D + +++ DG WDV ++ GH V C D +P G+
Sbjct: 153 HTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211
Query: 193 MFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGN-SVKIWDLI 251
FV+G D +WD+R E H + V + PSG A+ + + +++DL
Sbjct: 212 TFVSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Query: 252 GGGKM-VYSMES 262
++ +YS ES
Sbjct: 271 ADREVAIYSKES 282
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 151 LVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLW 206
L +G +D + WDV S V LFGH++ V SP +G F +GS+DHT+++W
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 10/135 (7%)
Query: 119 VFDVKSRTPLRRLKSHTRPVRFVKY-PFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGH 177
V+D++S ++ ++H V V+Y P D SG DD + +D+ + V
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAF--ASGSDDATCRLYDLRADREVA--IYS 279
Query: 178 KDYVRCGDCS---PVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSG 234
K+ + G S ++G + G D+T+ +WDV ++ S+ + H + + P G
Sbjct: 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV-LKGSRVSILFGHENRVSTLRVSPDG 338
Query: 235 -GLIATAGGNSVKIW 248
+ + +++++W
Sbjct: 339 TAFCSGSWDHTLRVW 353
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 54 INSIVFSPTTSHLFAATHSASLTLFS-------SQTLEKHSAISSFKDVVTCSSFRPXX- 105
I SI PT ++ + + ++ L++ QT E H + V C +F P
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH------EHFVMCVAFNPKDP 153
Query: 106 XXXXXXXXXXXIQVFDVKSRTPLRRLKS-HTRPVRFVKY-PFLDKLHLVSGGDDGIVKFW 163
++V+ + TP L + R V +V Y P DK ++++ DD +K W
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 164 DVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207
D +S V L GH V P + ++GS D T+K+W+
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 33/293 (11%)
Query: 83 LEKHSAISSFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVK 142
L+ S+ D V F P +++++ +++ +R ++ PVR K
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 143 YPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHT 202
+ K ++ G DD ++ ++ V+D H DY+R P ++GS D T
Sbjct: 63 F-IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLT 120
Query: 203 VKLWDVRVENSKSVMEV--NHGKPIEDVMFLPSGGLIATAG--GNSVKIWDLIGGGKMVY 258
VKLW+ EN+ ++ + H + V F P +G +VK+W L
Sbjct: 121 VKLWN--WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-------- 170
Query: 259 SMESHNKTVTSVCVGRVGNESGEEAMQY-------RILSVALDGYMKVFDYGKMKVTHSM 311
+ N T+T+ G E G + Y +++ + D +K++DY ++
Sbjct: 171 GQSTPNFTLTT------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 312 RFPAPLMSVA-FSPDCMTRVIGTSNGTI---FAGRRKKKENVESGIENFWSLG 360
+S A F P + G+ +GT+ + K ++ + G+E W +
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 16/232 (6%)
Query: 31 SQTPESKYWSSF---KPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHS 87
SQ + W S+ K H IP S + + ++P+ +++ ++++ +T E +
Sbjct: 85 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 144
Query: 88 AIS----SFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKY 143
+S ++C F ++D+++ HT V +
Sbjct: 145 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQTTTFTGHTGDVMSLSL 203
Query: 144 PFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203
+L VSG D K WDV GH+ + C NG+ F TGS D T
Sbjct: 204 APDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATC 261
Query: 204 KLWDVRVENSKSVMEVNHGK---PIEDVMFLPSGGLIATAGGN-SVKIWDLI 251
+L+D+R + + +M +H I V F SG L+ + + +WD +
Sbjct: 262 RLFDLRAD--QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Query: 56 SIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXXXX 115
S+ +P T + AS L+ + + + + F P
Sbjct: 200 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 259
Query: 116 XIQVFDVKSRTPLRRLKSHTR------PVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169
++FD+++ L SH V F K L L++G DD WD
Sbjct: 260 TCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRL----LLAGYDDFNCNVWDALKAD 314
Query: 170 VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207
L GH + V C + +G TGS+D +K+W+
Sbjct: 315 RAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 16/232 (6%)
Query: 31 SQTPESKYWSSF---KPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHS 87
SQ + W S+ K H IP S + + ++P+ +++ ++++ +T E +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 88 AIS----SFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKY 143
+S ++C F ++D+++ HT V +
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQTTTFTGHTGDVMSLSL 192
Query: 144 PFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203
+L VSG D K WDV GH+ + C NG+ F TGS D T
Sbjct: 193 APDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATC 250
Query: 204 KLWDVRVENSKSVMEVNHGK---PIEDVMFLPSGGLIATAGGN-SVKIWDLI 251
+L+D+R + + +M +H I V F SG L+ + + +WD +
Sbjct: 251 RLFDLRAD--QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Query: 56 SIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXXXX 115
S+ +P T + AS L+ + + + + F P
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 116 XIQVFDVKSRTPLRRLKSHTR------PVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169
++FD+++ L SH V F K L L++G DD WD
Sbjct: 249 TCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRL----LLAGYDDFNCNVWDALKAD 303
Query: 170 VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207
L GH + V C + +G TGS+D +K+W+
Sbjct: 304 RAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
I V+ + +TP +L H P+ +++ +KL L+S DDG ++ W + +G
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL-LLSASDDGTLRIWHGGNGNSQNCFYG 287
Query: 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPI 225
H + S V D ++ S D +V+LW ++ +N+ + + G PI
Sbjct: 288 HSQSIVS--ASWVGDDKVISCSMDGSVRLWSLK-QNTLLALSIVDGVPI 333
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 16/232 (6%)
Query: 31 SQTPESKYWSSF---KPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHS 87
SQ + W S+ K H IP S + + ++P+ +++ ++++ +T E +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 88 AIS----SFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKY 143
+S ++C F ++D+++ HT V +
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQTTTFTGHTGDVMSLSL 192
Query: 144 PFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203
+L VSG D K WDV GH+ + C NG+ F TGS D T
Sbjct: 193 APDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATC 250
Query: 204 KLWDVRVENSKSVMEVNHGK---PIEDVMFLPSGGLIATAGGN-SVKIWDLI 251
+L+D+R + + +M +H I V F SG L+ + + +WD +
Sbjct: 251 RLFDLRAD--QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Query: 56 SIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXXXX 115
S+ +P T + AS L+ + + + + F P
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 116 XIQVFDVKSRTPLRRLKSHTR------PVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169
++FD+++ L SH V F K L L++G DD WD
Sbjct: 249 TCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRL----LLAGYDDFNCNVWDALKAD 303
Query: 170 VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207
L GH + V C + +G TGS+D +K+W+
Sbjct: 304 RAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 16/232 (6%)
Query: 31 SQTPESKYWSSF---KPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHS 87
SQ + W S+ K H IP S + + ++P+ +++ ++++ +T E +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 88 AIS----SFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKY 143
+S ++C F ++D+++ HT V +
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQTTTFTGHTGDVMSLSL 192
Query: 144 PFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203
+L VSG D K WDV GH+ + C NG+ F TGS D T
Sbjct: 193 APDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATC 250
Query: 204 KLWDVRVENSKSVMEVNHGK---PIEDVMFLPSGGLIATAGGN-SVKIWDLI 251
+L+D+R + + +M +H I V F SG L+ + + +WD +
Sbjct: 251 RLFDLRAD--QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Query: 56 SIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXXXX 115
S+ +P T + AS L+ + + + + F P
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 116 XIQVFDVKSRTPLRRLKSHTR------PVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169
++FD+++ L SH V F K L L++G DD WD
Sbjct: 249 TCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRL----LLAGYDDFNCNVWDALKAD 303
Query: 170 VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207
L GH + V C + +G TGS+D +K+W+
Sbjct: 304 RAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 16/232 (6%)
Query: 31 SQTPESKYWSSF---KPHQIPGLVSSINSIVFSPTTSHLFAATHSASLTLFSSQTLEKHS 87
SQ + W S+ K H IP S + + ++P+ +++ ++++ +T E +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 88 AIS----SFKDVVTCSSFRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKY 143
+S ++C F ++D+++ HT V +
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT-CALWDIETGQQTTTFTGHTGDVMSLSL 192
Query: 144 PFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTV 203
+L VSG D K WDV GH+ + C NG+ F TGS D T
Sbjct: 193 APDTRL-FVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATC 250
Query: 204 KLWDVRVENSKSVMEVNHGK---PIEDVMFLPSGGLIATAGGN-SVKIWDLI 251
+L+D+R + + +M +H I V F SG L+ + + +WD +
Sbjct: 251 RLFDLRAD--QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Query: 56 SIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXXXX 115
S+ +P T + AS L+ + + + + F P
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 116 XIQVFDVKSRTPLRRLKSHTR------PVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGES 169
++FD+++ L SH V F K L L++G DD WD
Sbjct: 249 TCRLFDLRADQELMTY-SHDNIICGITSVSFSKSGRL----LLAGYDDFNCNVWDALKAD 303
Query: 170 VVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207
L GH + V C + +G TGS+D +K+W+
Sbjct: 304 RAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 26/174 (14%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVR---FVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173
++V+D+K + H VR V+Y + ++V+G D + W + ES V D
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD 242
Query: 174 LFGHKDY---------------VRCGDCSPV-----NGDMFVTGSYDHTVKLWDVRVENS 213
DY V G + V +G++ V+GSYD+T+ +WDV
Sbjct: 243 HGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKC 302
Query: 214 KSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTV 267
++ + + + I+ + +++IWDL G++ Y+++ H V
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL-ENGELXYTLQGHTALV 355
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 150 HLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR 209
++++G DD ++ +D + +L L GH V +G + V+GS D TV++WD++
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWA--LKYAHGGILVSGSTDRTVRVWDIK 191
Query: 210 VENSKSVMEVNHG--KPIEDVMFLPSGGLIATAGGNSVKIWDL 250
V E ++ + ++ V + ++ + N++ +W L
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVR---FVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173
++V+D+K + H VR V+Y + ++V+G D + W + ES V D
Sbjct: 185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD 242
Query: 174 LFGHKDY---------------VRCGDCSPV-----NGDMFVTGSYDHTVKLWDVRVENS 213
DY V G + V +G++ V+GSYD+T+ +WDV
Sbjct: 243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC 302
Query: 214 KSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTV 267
++ + + + I+ + +++IWDL G+++Y+++ H V
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL-ENGELMYTLQGHTALV 355
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 150 HLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR 209
++++G DD +++ +D + +L L GH V +G + V+GS D TV++WD++
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA--LKYAHGGILVSGSTDRTVRVWDIK 191
Query: 210 VENSKSVMEVNHG--KPIEDVMFLPSGGLIATAGGNSVKIWDL 250
V E ++ + ++ V + ++ + N++ +W L
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 14/162 (8%)
Query: 151 LVSGGDDGIVKFWDVAGESVV-------LDLFGHKDYVRCGDCSPVNGDMF-VTGSYDHT 202
L+SG D V W + E L GH +V D + + F ++ S+D T
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFV--SDLALSQENCFAISSSWDKT 99
Query: 203 VKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGN-SVKIWDLIGGGKMVYS-M 260
++LWD+R + V H + V F P I +AG +K+W+++G K +
Sbjct: 100 LRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK 158
Query: 261 ESHNKTVTSVCVGRVGNESGE-EAMQYRILSVALDGYMKVFD 301
E+H+ V+ V + + + + SV DG +KV++
Sbjct: 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 75/215 (34%), Gaps = 50/215 (23%)
Query: 49 GLVSSINSIVFSPTTSHLFAATHSASLTL--------FSSQTLEKHSAISSFKDVVTCSS 100
G S + S+ FSP + +A + L FSS E HS D V+C
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHS------DWVSCVR 169
Query: 101 FRPXXXXXXXXXXXXXIQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIV 160
+ P +KS + F Y S G DG +
Sbjct: 170 YSPI--------------------------MKSANKVQPFAPY-------FASVGWDGRL 196
Query: 161 KFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN 220
K W+ + + H+ V SP NG TG D + +WD+ + + E +
Sbjct: 197 KVWNTNFQ-IRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDI-LNLTYPQREFD 253
Query: 221 HGKPIEDVMFLPSGGLIATAGGNSVKIWDLIGGGK 255
G I + F P +A VKI++L+ K
Sbjct: 254 AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 117 IQVFDVKSRTPLRRLKSH---TRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173
+ ++D+ + TP R+K+ + P + D S DG + WD+ +++V
Sbjct: 121 LSIWDLAAPTP--RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178
Query: 174 LFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPS 233
GH D C D S +G TG D+TV+ WD+R + + + + I + + P+
Sbjct: 179 FQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLR--EGRQLQQHDFTSQIFSLGYCPT 235
Query: 234 GGLIA 238
G +A
Sbjct: 236 GEWLA 240
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 152 VSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVE 211
VSG D +K WD+A + V+ H V C SP +F++ S D+ + LWD R
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 212 NSKS 215
S
Sbjct: 203 KPAS 206
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 168 ESVVLDLF---GHKDYVRCGDCSPVNGDMFVTGSYDHTV 203
+S + +LF H+D+VR SP+N + T +DH V
Sbjct: 286 DSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQV 324
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 151 LVSGGDDGIVKFWDVAGESVVLDLF---GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWD 207
L S G D ++ W G+S + GH+ VR SP G+ + S+D T +W
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDATTCIWK 89
Query: 208 VRVENSKSVMEVN-HGKPIEDVMFLPSGGLIATAGGN-SVKIW--DLIGGGKMVYSMESH 263
++ + V + H ++ V + PSG L+AT + SV +W D + V + SH
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149
Query: 264 NKTVTSV 270
+ V V
Sbjct: 150 TQDVKHV 156
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 191 GDMFVTGSYDHTVKLWDVRVEN--SKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVK-I 247
G + + D +++W ++ KSV+ H + + V + P G +A+A ++ I
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 248 WDLIGGG-KMVYSMESHNKTVTSVCVGRVGN 277
W + V ++E H V SV GN
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 11/156 (7%)
Query: 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG---ESVVLD----LFGHK 178
P RL+ H + + + HL+S DD + WD++ E V+D GH
Sbjct: 168 NPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHT 227
Query: 179 DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN-SKSVMEVN-HGKPIEDVMFLPSGGL 236
V ++ +F + + D + +WD R N SK V+ H + + F P
Sbjct: 228 AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEF 287
Query: 237 IATAGG--NSVKIWDLIGGGKMVYSMESHNKTVTSV 270
I G +V +WDL ++S ESH + V
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 323
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 10/177 (5%)
Query: 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVV---LDLFGHKDYVRCGDCSPVN 190
HT V V + L + S DD + WD + + H V C +P +
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 191 GDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNS--VKIW 248
+ TGS D TV LWD+R K +H I V + P I + G + +W
Sbjct: 286 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Query: 249 DL--IGGGKMVYSMESHNKTVTSVCVG---RVGNESGEEAMQYRILSVALDGYMKVF 300
DL IG + E + + G ++ + S + I SV+ D M+V+
Sbjct: 346 DLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 117 IQVFDVKSRT---PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173
+ ++D +S P + +HT V + + + L +G D V WD+ + L
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 174 LF-GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKPIEDVMFL 231
F HKD + SP N + + D + +WD+ ++ +S + G P +++F+
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP--ELLFI 369
Query: 232 PSGGLIATAGGNSVKIWDL 250
GG++ KI D
Sbjct: 370 --------HGGHTAKISDF 380
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 10/177 (5%)
Query: 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVV---LDLFGHKDYVRCGDCSPVN 190
HT V V + L + S DD + WD + + H V C +P +
Sbjct: 230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289
Query: 191 GDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNS--VKIW 248
+ TGS D TV LWD+R K +H I V + P I + G + +W
Sbjct: 290 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
Query: 249 DL--IGGGKMVYSMESHNKTVTSVCVG---RVGNESGEEAMQYRILSVALDGYMKVF 300
DL IG + E + + G ++ + S + I SV+ D M+V+
Sbjct: 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 117 IQVFDVKSRT---PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173
+ ++D ++ P + +HT V + + + L +G D V WD+ + L
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 174 LF-GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKPIEDVMFL 231
F HKD + SP N + + D + +WD+ ++ +S + G P +++F+
Sbjct: 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFI 373
Query: 232 PSGGLIATAGGNSVKIWDL 250
GG++ KI D
Sbjct: 374 --------HGGHTAKISDF 384
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query: 127 PLRRLKSHTRPVRFVKY-PFLDKLHLVSGGDDGIVKFWDVAG---ESVVLD----LFGHK 178
P RL+ H + + + P L+ +L+S DD + WD+ E V+D GH
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNG-YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 179 DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN-SKSVMEVN-HGKPIEDVMFLPSGGL 236
V ++ +F + + D + +WD R N SK V+ H + + F P
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 237 IATAGG--NSVKIWDLIGGGKMVYSMESHNKTVTSV 270
I G +V +WDL ++S ESH + V
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 145 FLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVK 204
F D VSGG D VK WD++ ++V+ H V C P +F++ D +
Sbjct: 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207
Query: 205 LWDVR 209
LWD R
Sbjct: 208 LWDTR 212
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
+ + ++K+ + H++ + + Y + L S +D V D V DL
Sbjct: 251 VSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-S 309
Query: 177 HKDYVRCGDCSPVNGDMFVTGSYDHTV 203
H+D+V SP++ F T +DH V
Sbjct: 310 HRDFVTGVAWSPLDHSKFTTVGWDHKV 336
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 15/139 (10%)
Query: 117 IQVFDVKSRT---PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173
+ ++D +S T P + +HT V + + + L +G D V WD+ + L
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 174 LF-GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKPIEDVMFL 231
F HKD + SP N + + D + +WD+ ++ +S + G P +++F+
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP--ELLFI 371
Query: 232 PSGGLIATAGGNSVKIWDL 250
GG++ KI D
Sbjct: 372 --------HGGHTAKISDF 382
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 14/179 (7%)
Query: 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-----VLDLFGHKDYVRCGDCSP 188
H+ V V + L + S DD + WD + ++D H V C +P
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVD--AHTAEVNCLSFNP 285
Query: 189 VNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNS--VK 246
+ + TGS D TV LWD+R K +H I V + P I + G +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 247 IWDL--IGGGKMVYSMESHNKTVTSVCVG---RVGNESGEEAMQYRILSVALDGYMKVF 300
+WDL IG + E + + G ++ + S + I SV+ D M+++
Sbjct: 346 VWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 11/156 (7%)
Query: 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDV-AG--ESVVLD----LFGHK 178
P RL+ H + + + HL+S DD V WD+ AG E ++D GH
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 179 DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK--SVMEVNHGKPIEDVMFLPSGGL 236
V ++ +F + + D + +WD R + S + H + + F P
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 237 IATAGG--NSVKIWDLIGGGKMVYSMESHNKTVTSV 270
I G +V +WDL +++ ESH + V
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 15/139 (10%)
Query: 117 IQVFDVKSRT---PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173
+ ++D +S T P + +HT V + + + L +G D V WD+ + L
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 174 LF-GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKPIEDVMFL 231
F HKD + SP N + + D + +WD+ ++ +S + G P +++F+
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP--ELLFI 371
Query: 232 PSGGLIATAGGNSVKIWDL 250
GG++ KI D
Sbjct: 372 --------HGGHTAKISDF 382
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 9/124 (7%)
Query: 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-----VLDLFGHKDYVRCGDCSP 188
H+ V V + L + S DD + WD + ++D H V C +P
Sbjct: 228 HSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVD--AHTAEVNCLSFNP 285
Query: 189 VNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNS--VK 246
+ + TGS D TV LWD+R K +H I V + P I + G +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 247 IWDL 250
+WDL
Sbjct: 346 VWDL 349
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 11/156 (7%)
Query: 126 TPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDV-AG--ESVVLD----LFGHK 178
P RL+ H + + + HL+S DD V WD+ AG E ++D GH
Sbjct: 170 NPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 179 DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSK--SVMEVNHGKPIEDVMFLPSGGL 236
V ++ +F + + D + +WD R + S + H + + F P
Sbjct: 230 AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEF 289
Query: 237 IATAGG--NSVKIWDLIGGGKMVYSMESHNKTVTSV 270
I G +V +WDL +++ ESH + V
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 10/177 (5%)
Query: 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVV---LDLFGHKDYVRCGDCSPVN 190
HT V V + L + S DD + WD + + H V C +P +
Sbjct: 232 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 291
Query: 191 GDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNS--VKIW 248
+ TGS D TV LWD+R K +H I V + P I + G + +W
Sbjct: 292 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
Query: 249 DL--IGGGKMVYSMESHNKTVTSVCVG---RVGNESGEEAMQYRILSVALDGYMKVF 300
DL IG + E + + G ++ + S + I SV+ D M+V+
Sbjct: 352 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 117 IQVFDVKSRT---PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173
+ ++D ++ P + +HT V + + + L +G D V WD+ + L
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 174 LF-GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKPIEDVMFL 231
F HKD + SP N + + D + +WD+ ++ +S + G P +++F+
Sbjct: 318 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFI 375
Query: 232 PSGGLIATAGGNSVKIWDL 250
GG++ KI D
Sbjct: 376 --------HGGHTAKISDF 386
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query: 127 PLRRLKSHTRPVRFVKY-PFLDKLHLVSGGDDGIVKFWDVAG---ESVVLD----LFGHK 178
P RL+ H + + + P L+ +L+S DD + WD+ E V+D GH
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNG-YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 179 DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN-SKSVMEVN-HGKPIEDVMFLPSGGL 236
V ++ +F + + D + +WD R N SK V+ H + + F P
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 237 IATAGG--NSVKIWDLIGGGKMVYSMESHNKTVTSV 270
I G +V +WDL ++S ESH + V
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 329
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 10/177 (5%)
Query: 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVV---LDLFGHKDYVRCGDCSPVN 190
HT V V + L + S DD + WD + + H V C +P +
Sbjct: 234 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 293
Query: 191 GDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNS--VKIW 248
+ TGS D TV LWD+R K +H I V + P I + G + +W
Sbjct: 294 EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
Query: 249 DL--IGGGKMVYSMESHNKTVTSVCVG---RVGNESGEEAMQYRILSVALDGYMKVF 300
DL IG + E + + G ++ + S + I SV+ D M+V+
Sbjct: 354 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 117 IQVFDVKSRT---PLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLD 173
+ ++D ++ P + +HT V + + + L +G D V WD+ + L
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 174 LF-GHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDV-RVENSKSVMEVNHGKPIEDVMFL 231
F HKD + SP N + + D + +WD+ ++ +S + G P +++F+
Sbjct: 320 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPP--ELLFI 377
Query: 232 PSGGLIATAGGNSVKIWDL 250
GG++ KI D
Sbjct: 378 --------HGGHTAKISDF 388
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query: 127 PLRRLKSHTRPVRFVKY-PFLDKLHLVSGGDDGIVKFWDVAG---ESVVLD----LFGHK 178
P RL+ H + + + P L+ +L+S DD + WD+ E V+D GH
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNG-YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 179 DYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVEN-SKSVMEVN-HGKPIEDVMFLPSGGL 236
V ++ +F + + D + +WD R N SK V+ H + + F P
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 237 IATAGG--NSVKIWDLIGGGKMVYSMESHNKTVTSV 270
I G +V +WDL ++S ESH + V
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 331
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 130 RLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESV-VLDLFGHKDYVRCGDCSP 188
+L H RP+ VKY L D ++ + GE + LD GH G
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--GH-----TGTIWS 79
Query: 189 VNGDMF----VTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSG 234
++ D F VTGS D+++KLWDV N + V P++ V F P G
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLWDVS--NGQCVATWKSPVPVKRVEFSPCG 127
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 214 KSVMEVNHGKPIEDVMFLPSGGLI-ATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCV 272
K++ H +P+ V + G L+ + + +S +W + G ++ +++ H T+ S+ V
Sbjct: 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG-TLDGHTGTIWSIDV 82
Query: 273 GRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMRFPAPLMSVAFSP 324
+ ++ + D +K++D + + + P P+ V FSP
Sbjct: 83 ---------DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP 125
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 19/190 (10%)
Query: 66 LFAATH---SASLTLFSSQTLEKHSAI------SSFKDVVTCSSFRPXX---XXXXXXXX 113
LF T ++ ++F S T + H+ + SS D + C SF P
Sbjct: 3 LFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSW 62
Query: 114 XXXIQVFDVKS--RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVV 171
++ ++V+ +T + + HT PV V + D + + D K WD++ +
Sbjct: 63 ANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS-DDGSKVFTASCDKTAKMWDLSSNQAI 121
Query: 172 LDLFGHKDYVRCGDC-SPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMF 230
+ H V+ N +TGS+D T+K WD R N V+++ DV++
Sbjct: 122 -QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180
Query: 231 LPSGGLIATA 240
++ATA
Sbjct: 181 --PMAVVATA 188
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 193 MFVTGSYDHTVKLWDVRVENS--KSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKIWDL 250
MF + + D+ + D+ V +S S+ ++ P LP LIA + N V+ W++
Sbjct: 17 MFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPT-----LPGNFLIAGSWANDVRCWEV 71
Query: 251 IGGGKMV-YSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTH 309
G+ + + + H V VC G+ ++ + + D K++D +
Sbjct: 72 QDSGQTIPKAQQMHTGPVLDVCWSDDGS---------KVFTASCDKTAKMWDLSSNQAIQ 122
Query: 310 SMRFPAPLMSVAF--SPDCMTRVIGTSNGTI 338
+ AP+ ++ + +P+ + G+ + T+
Sbjct: 123 IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 54 INSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXX 113
I+S+ + ++L T SA + L+ Q ++ ++S V S+
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR 218
Query: 114 XXXIQVFDVK-SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA---GES 169
I DV+ + + L H++ V +++ D HL SGG+D +V W A G
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGW 277
Query: 170 VVLDLFG-HKDYVRCGDCSPVNGDMFVT--GSYDHTVKLWDV 208
V L F H+ V+ P ++ T G+ D +++W+V
Sbjct: 278 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 150 HLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR 209
+L G V+ WDV + + ++ H R G S N + +GS + DVR
Sbjct: 172 YLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLS-WNSYILSSGSRSGHIHHHDVR 228
Query: 210 VENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG-NSVKIWDLI---GGGKMVYSMESHNK 265
V H + + + + P G +A+ G N V +W GG + + H
Sbjct: 229 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 288
Query: 266 TVTSVC 271
V +V
Sbjct: 289 AVKAVA 294
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKS--VMEVNHGKPIEDVMFLP-- 232
HK V + +P + T S D TVKLWD+R K+ + E+ H KP+ F P
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 233 SGGLIATAGGNSVKIW 248
S L+ T N ++++
Sbjct: 262 STKLLTTDQRNEIRVY 277
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 54 INSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXX 113
I+S+ + ++L T SA + L+ Q ++ ++S V S+
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR 207
Query: 114 XXXIQVFDVK-SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA---GES 169
I DV+ + + L H++ V +++ D HL SGG+D +V W A G
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGW 266
Query: 170 VVLDLFG-HKDYVRCGDCSPVNGDMFVT--GSYDHTVKLWDV 208
V L F H+ V+ P ++ T G+ D +++W+V
Sbjct: 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 150 HLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR 209
+L G V+ WDV + + ++ H R G S N + +GS + DVR
Sbjct: 161 YLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLS-WNSYILSSGSRSGHIHHHDVR 217
Query: 210 VENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG-NSVKIWDLI---GGGKMVYSMESHNK 265
V H + + + + P G +A+ G N V +W GG + + H
Sbjct: 218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277
Query: 266 TVTSVC 271
V +V
Sbjct: 278 AVKAVA 283
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKS--VMEVNHGKPIEDVMFLP-- 232
HK V + +P + T S D TVKLWD+R K+ + E+ H KP+ F P
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 233 SGGLIATAGGNSVKIW 248
S L+ T N ++++
Sbjct: 263 STKLLTTDQRNEIRVY 278
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 151 LVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210
+V+G + G V ++ G+ + +L HK V +P T S D TVK+WD+R
Sbjct: 224 VVTGDNVGNVILLNMDGKEL-WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Query: 211 ENSKS--VMEVNHGKPIEDVMFLPSGGLIAT 239
K+ + + H P+ F P G + T
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLT 313
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 151 LVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210
+V+G + G V ++ G+ + +L HK V +P T S D TVK+WD+R
Sbjct: 224 VVTGDNVGNVILLNMDGKEL-WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 282
Query: 211 ENSKS--VMEVNHGKPIEDVMFLPSGGLIAT 239
K+ + + H P+ F P G + T
Sbjct: 283 VRGKASFLYSLPHRHPVNAACFSPDGARLLT 313
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 151 LVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRV 210
+V+G + G V ++ G+ + +L HK V +P T S D TVK+WD+R
Sbjct: 225 VVTGDNVGNVILLNMDGKEL-WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ 283
Query: 211 ENSKS--VMEVNHGKPIEDVMFLPSGGLIAT 239
K+ + + H P+ F P G + T
Sbjct: 284 VRGKASFLYSLPHRHPVNAACFSPDGARLLT 314
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDM 193
H VR + +D H +S +DG++K D V+ GH+ +V C P NGD+
Sbjct: 183 HNDVVRHL--AVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLP-NGDI 239
Query: 194 FVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGNSVKI 247
G D TV++W + K V+ + I V +G +I + N V+I
Sbjct: 240 VSCGE-DRTVRIWSKENGSLKQVITL-PAISIWSVDCXSNGDIIVGSSDNLVRI 291
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 87/227 (38%), Gaps = 31/227 (13%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
+ +F PL L H V F D + ++SG D K W S+V +L
Sbjct: 86 VPLFATSGEDPLYTLIGHQGNV--CSLSFQDGV-VISGSWDKTAKVWKEG--SLVYNLQA 140
Query: 177 HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN--HGKPIEDVMFLPSG 234
H V + + F+T S D T+KLW +N K + + H + + + G
Sbjct: 141 HNASVWDAKVVSFSENKFLTASADKTIKLW----QNDKVIKTFSGIHNDVVRHLAVVDDG 196
Query: 235 GLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALD 294
I+ + +K+ D G ++ + E H V C+ + N I+S D
Sbjct: 197 HFISCSNDGLIKLVDX-HTGDVLRTYEGHESFV--YCIKLLPNGD--------IVSCGED 245
Query: 295 GYMKVFDYGKMKVTHSMRFPAPLMSVAFSPDCMTRVIGTSNGTIFAG 341
++++ + + PA + +S DC SNG I G
Sbjct: 246 RTVRIWSKENGSLKQVITLPAISI---WSVDCX------SNGDIIVG 283
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 151 LVSGGDDGIVKFW--DVAGESVVLD--LFGHKDYVRCGDCSP--VNGDMFVTGSYDHTVK 204
V+GG D +VK W + ++ VL+ L GH D+VR SP + + S D T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 205 LWDVRVENSKSVMEVNHGKPIEDVMFLP----SGGLIATAGG-NSVKIWDLIGGGKMVYS 259
+W E + + DV++ SG ++A +GG N V +W GK +
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 292
Query: 260 MESH 263
E H
Sbjct: 293 GEVH 296
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 16/136 (11%)
Query: 125 RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG--HKDYVR 182
R P+ L+ HT+ V V + + L+S G D ++ WDV + VL L H D +
Sbjct: 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIY 180
Query: 183 CGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIED-----VMFLPSGGLI 237
D S +G + T D V++ +E K + +P E +F+ G ++
Sbjct: 181 SVDWS-RDGALICTSCRDKRVRV----IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235
Query: 238 ATA----GGNSVKIWD 249
T V +WD
Sbjct: 236 TTGFSRMSERQVALWD 251
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 10/127 (7%)
Query: 122 VKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVL-------DL 174
V PL + HT PV + + + + SG +D V W++ +VL L
Sbjct: 70 VDKNVPL--VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 175 FGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-HGKPIEDVMFLPS 233
GH V P ++ ++ D+ + +WDV + + + H I V +
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187
Query: 234 GGLIATA 240
G LI T+
Sbjct: 188 GALICTS 194
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 54 INSIVFSPTTSHLFAATHSASLTLFSSQTLEKHSAISSFKDVVTCSSFRPXXXXXXXXXX 113
I+S+ + ++L T SA + L+ Q ++ ++S V S+
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSR 127
Query: 114 XXXIQVFDVK-SRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVA---GES 169
I DV+ + + L H++ V +++ D HL SGG+D +V W A G
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGW 186
Query: 170 VVLDLFG-HKDYVRCGDCSPVNGDMFVT--GSYDHTVKLWDV 208
V L F H+ V+ P ++ T G+ D +++W+V
Sbjct: 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 150 HLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVR 209
+L G V+ WDV + + ++ H R G S N + +GS + DVR
Sbjct: 81 YLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLS-WNSYILSSGSRSGHIHHHDVR 137
Query: 210 VENSKSVMEVNHGKPIEDVMFLPSGGLIATAGG-NSVKIW 248
V H + + + + P G +A+ G N V +W
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 16/136 (11%)
Query: 125 RTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG--HKDYVR 182
R P+ L+ HT+ V V + + L+S G D ++ WDV + VL L H D +
Sbjct: 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180
Query: 183 CGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIED-----VMFLPSGGLI 237
D S +G + T D V++ +E K + +P E +F+ G ++
Sbjct: 181 SVDWS-RDGALICTSCRDKRVRV----IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235
Query: 238 ATA----GGNSVKIWD 249
T V +WD
Sbjct: 236 TTGFSRMSERQVALWD 251
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 71/203 (34%), Gaps = 65/203 (32%)
Query: 183 CGDCSPV--------NGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSG 234
CG +PV N ++ +GS D TV +W++ P G
Sbjct: 78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI-----------------------PDG 114
Query: 235 GLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALD 294
GL+ + V ++E H K RVG + Q +LS D
Sbjct: 115 GLVLPL-------------REPVITLEGHTK--------RVGIVAWHPTAQNVLLSAGCD 153
Query: 295 GYMKVFDYGKMKVTHSMR---FPAPLMSVAFSPD----CMT------RVIGTSNGTIFAG 341
+ V+D G ++ P + SV +S D C + RVI GT+ A
Sbjct: 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
Query: 342 RRKKKENVESGIENFWSLGRVET 364
+ + E F S G++ T
Sbjct: 214 KDRPHEGTRPVHAVFVSEGKILT 236
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 158 GIVKFWDVAGE----SVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENS 213
G +K WD + S +L L G + + C D P + TG D + +WDVR
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTM 271
Query: 214 KSVMEVNHGKPIEDVMFLPSG--GLIATAGGNSVKIWD 249
+ H + +V F PS L + S+ WD
Sbjct: 272 PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 151 LVSGGDDGIVKFW--DVAGESVVLD--LFGHKDYVRCGDCSP--VNGDMFVTGSYDHTVK 204
V+GG D +VK W + ++ VL+ L GH D+VR SP + + S D T
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 205 LWDVRVENSKSVMEVNHGKPIEDVMFLP----SGGLIATAGG-NSVKIWDLIGGGKMVYS 259
+W E + + DV++ SG ++A +GG N V +W GK +
Sbjct: 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 294
Query: 260 MESH 263
E H
Sbjct: 295 GEVH 298
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 151 LVSGGDDGIVKFWDV--AGESVVLDLFGHKDYV-RCGDCSPVNGDMFVTGSYDHTVKLWD 207
L + D VK +DV G+ ++ DL GH+ V + P+ G++ + SYD V +W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW- 86
Query: 208 VRVENS---KSVMEVNHGKPIEDVMFLPSG-GLIATAG 241
R EN KS H + V + P GLI G
Sbjct: 87 -REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG 123
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 151 LVSGGDDGIVKFW--DVAGESVVLD--LFGHKDYVRCGDCSP--VNGDMFVTGSYDHTVK 204
V+GG D +VK W + ++ VL+ L GH D+VR SP + + S D T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 205 LWDVRVENSKSVMEVNHGKPIEDVMFLP----SGGLIATAGG-NSVKIW 248
+W E + + DV++ SG ++A +GG N V +W
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 151 LVSGGDDGIVKFW--DVAGESVVLD--LFGHKDYVRCGDCSP--VNGDMFVTGSYDHTVK 204
V+GG D +VK W + ++ VL+ L GH D+VR SP + + S D T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 205 LWDVRVENSKSVMEVNHGKPIEDVMFLP----SGGLIATAGG-NSVKIW 248
+W E + + DV++ SG ++A +GG N V +W
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 46/178 (25%)
Query: 150 HLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRC-GDCS-------------------PV 189
+++SGG DG++ +D+ S + Y C CS P
Sbjct: 58 YMLSGGSDGVIVLYDLENSS-------RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110
Query: 190 NGDMFVTGSYDHTVKLWDVR------VENSKSVMEVNHGKPIEDVMFLPSGGLIATAGGN 243
+ MF + S+D T+K+WD V N + + +H P+ L + G G
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVG----TRGP 166
Query: 244 SVKIWDLIGGGKMVYSMESHNKTVTSVCVGRVGNESGEEAMQYRILSVALDGYMKVFD 301
V++ DL G + ++ H + + +V S Y + + + D +K++D
Sbjct: 167 KVQLCDL-KSGSCSHILQGHRQEILAV--------SWSPRYDYILATASADSRVKLWD 215
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 12/178 (6%)
Query: 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGD- 192
H V V++ D S D +K WD D+F ++ V SPV+
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA-DVFNFEETVYSHHMSPVSTKH 156
Query: 193 -MFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIEDVMFLPSGGLI-ATAGGNS-VKIWD 249
+ G+ V+L D++ + +++ H + I V + P I ATA +S VK+WD
Sbjct: 157 CLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Query: 250 LIGGGKMVYSMESHN----KTVTSVCVGRVGNESGE--EAMQYRILSVALDGYMKVFD 301
+ + +++ HN + V S G +G + +L+V D M++++
Sbjct: 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 17/127 (13%)
Query: 144 PFLDKLHLVSGGDDG-IVKFWDVAGESVVLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHT 202
P K LV+ G G V+ D+ S L GH+ + SP + T S D
Sbjct: 151 PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 203 VKLWDVRVEN-------------SKSVMEVN--HGKPIEDVMFLPSGGLIATAG-GNSVK 246
VKLWDVR + S++V N H + + F G + T G N ++
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270
Query: 247 IWDLIGG 253
+W+ G
Sbjct: 271 LWNSSNG 277
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 15/164 (9%)
Query: 155 GDDGIVKFWDVAG-ESVVLDLFGHKD--YVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVE 211
GDDG V F+ + D HK +VR + SP +G+ +T D + +D +
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239
Query: 212 NSKSVMEVNHGKPIEDVMFLPS---GGLIATAGGN-SVKIWDLIGGGKMVYSMESHNKTV 267
+E + +P++ +F S AT G + ++++WD + K V + +
Sbjct: 240 EFLKYIEDDQ-EPVQGGIFALSWLDSQKFATVGADATIRVWD-VTTSKCVQKWTLDKQQL 297
Query: 268 TSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSM 311
+ VG V +G RI+S++LDG + ++ G +V ++
Sbjct: 298 GNQQVGVVATGNG------RIISLSLDGTLNFYELGHDEVLKTI 335
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 15/164 (9%)
Query: 155 GDDGIVKFWDVAG-ESVVLDLFGHKD--YVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVE 211
GDDG V F+ + D HK +VR + SP +G+ +T D + +D +
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239
Query: 212 NSKSVMEVNHGKPIEDVMFLPS---GGLIATAGGN-SVKIWDLIGGGKMVYSMESHNKTV 267
+E + +P++ +F S AT G + ++++WD + K V + +
Sbjct: 240 EFLKYIEDDQ-EPVQGGIFALSWLDSQKFATVGADATIRVWD-VTTSKCVQKWTLDKQQL 297
Query: 268 TSVCVGRVGNESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSM 311
+ VG V +G RI+S++LDG + ++ G +V ++
Sbjct: 298 GNQQVGVVATGNG------RIISLSLDGTLNFYELGHDEVLKTI 335
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
I++ + + ++ H + +K+ D L+S D ++ W++ +++V +FG
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA-IFG 191
Query: 177 ----HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV 219
H+D V D + G+ ++ DH++KLW + NSK +M
Sbjct: 192 GVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRI---NSKRMMNA 234
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
I++ + + ++ H + +K+ D L+S D ++ W++ +++V +FG
Sbjct: 92 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA-IFG 150
Query: 177 ----HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV 219
H+D V D + G+ ++ DH++KLW + NSK +M
Sbjct: 151 GVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRI---NSKRMMNA 193
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
I++ + + ++ H + +K+ D L+S D ++ W++ +++V +FG
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA-IFG 154
Query: 177 ----HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV 219
H+D V D + G+ ++ DH++KLW + NSK +M
Sbjct: 155 GVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRI---NSKRMMNA 197
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
I++ + + ++ H + +K+ D L+S D ++ W++ +++V +FG
Sbjct: 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA-IFG 155
Query: 177 ----HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV 219
H+D V D + G+ ++ DH++KLW + NSK +M
Sbjct: 156 GVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRI---NSKRMMNA 198
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 117 IQVFDVKSRTPLRRLKSHTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAGESVVLDLFG 176
I++ + + ++ H + +K+ D L+S D ++ W++ +++V +FG
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVA-IFG 154
Query: 177 ----HKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEV 219
H+D V D + G+ ++ DH++KLW + NSK +M
Sbjct: 155 GVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRI---NSKRMMNA 197
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 11/124 (8%)
Query: 151 LVSGGDDGIVKFW--DVAGESVVLD--LFGHKDYVRCGDCSP--VNGDMFVTGSYDHTVK 204
V+GG D +VK W + ++ VL+ L GH D+VR SP + + S D T
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCI 232
Query: 205 LWDVRVENSKSVMEVNHGKPIEDVMFLP----SGGLIATAGG-NSVKIWDLIGGGKMVYS 259
+W E + + DV++ SG ++A +GG N V +W GK +
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA 292
Query: 260 MESH 263
E H
Sbjct: 293 GEVH 296
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 31/215 (14%)
Query: 117 IQVFDVK-SRTPLRRLKSHTRPVRFVKY--PFLDKLHLVSGGDDGIVKFWDV-AGESVVL 172
IQ+++++ L R +P++ + L + +L +G G + W++ A E V
Sbjct: 46 IQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY 105
Query: 173 DLFGHKDYVRCGDCSPVNGDM-----FVTGSYDHTVKLWDVRVENSK-SVMEVNHGKPIE 226
+ GHK+ + D G VTGS D TVK+WD R ++ + ME G+
Sbjct: 106 SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165
Query: 227 DVMFLPSGGL------IATAG--GNSVKIWDLIGGGKMVYSMESHNKT-VTSVCVGRVGN 277
D + G + AG +K++DL M E++ K V S+ R
Sbjct: 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL---RNMALRWETNIKNGVCSLEFDR--- 219
Query: 278 ESGEEAMQYRILSVALDGYMKVFDYGKMKVTHSMR 312
++ ++++ +L+G VFD M+ H +
Sbjct: 220 ---KDISMNKLVATSLEGKFHVFD---MRTQHPTK 248
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 134 HTRPVRFVKYPFLDKLHLVSGGDDGIVKFWDVAG------ESVVLDLFGHKDYVRCGDCS 187
HT+ V V+Y L +GGD IV + V G E L H V S
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 188 PVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGKPIED 227
P +G + S D T+K+W+V + + V G IED
Sbjct: 249 P-DGTKIASASADKTIKIWNVATLKVEKTIPV--GTRIED 285
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 23/103 (22%)
Query: 188 PVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVNHGK-------------------PIEDV 228
P + + FV S T++L D+R S + H K I DV
Sbjct: 236 PNSCNTFVYSSSKGTIRLCDMRA----SALCDRHSKLFEEPEDPSNRSFFSEIISSISDV 291
Query: 229 MFLPSGGLIATAGGNSVKIWDLIGGGKMVYSMESHNKTVTSVC 271
F SG + T SVK+WDL + V + + H + +C
Sbjct: 292 KFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLC 334
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 129 RRLKSHTRPVRFVKYPFLD-KLHLVSGGDDGIVKFW 163
R L + VK+ L+ K L +GGDDGIV FW
Sbjct: 289 RALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 171 VLDLFGHKDYVRCGDCSPVNGDMFVTGSYDHTVKLWDVRVENSKSVMEVN-------HGK 223
VLD HK +R P + + GS+D TV +W + E++ E++ H
Sbjct: 51 VLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIW-AKEESADRTFEMDLLAIIEGHEN 108
Query: 224 PIEDVMFLPSGGLIATAGGN-SVKIWDLIGGG---KMVYSMESHNKTVTSV 270
++ V + G +AT + SV IW+ G + + ++ H++ V V
Sbjct: 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159
>pdb|3T3C|A Chain A, Structure Of Hiv Pr Resistant Patient Derived Mutant
(Comprising 22 Mutations) In Complex With Drv
pdb|3T3C|B Chain B, Structure Of Hiv Pr Resistant Patient Derived Mutant
(Comprising 22 Mutations) In Complex With Drv
Length = 99
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 398 LKLGEHDKLLKKFRHKEALVSVLNGKNPENVVA 430
+K+ ++D++L +F K+A+ SVL G P NV+
Sbjct: 54 VKVRQYDQILIEFCGKKAIGSVLVGPTPANVIG 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,525,170
Number of Sequences: 62578
Number of extensions: 643432
Number of successful extensions: 2079
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1483
Number of HSP's gapped (non-prelim): 271
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)